Query psy241
Match_columns 753
No_of_seqs 464 out of 2941
Neff 10.8
Searched_HMMs 46136
Date Sat Aug 17 00:15:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy241.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/241hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4221|consensus 100.0 4.2E-73 9.2E-78 599.1 59.1 657 2-705 404-1129(1381)
2 KOG4221|consensus 100.0 5E-44 1.1E-48 379.3 55.4 591 30-652 302-923 (1381)
3 KOG3513|consensus 100.0 1.2E-35 2.6E-40 318.6 64.3 627 31-697 306-976 (1051)
4 KOG3513|consensus 100.0 9.5E-35 2.1E-39 311.7 44.4 404 117-541 585-1009(1051)
5 KOG4222|consensus 99.9 1.1E-19 2.3E-24 194.1 35.6 513 115-647 282-844 (1281)
6 KOG0196|consensus 99.8 2.8E-18 6.2E-23 177.2 22.3 193 446-649 330-537 (996)
7 KOG0196|consensus 99.8 1.1E-17 2.3E-22 172.9 22.4 192 52-246 327-537 (996)
8 KOG4222|consensus 99.7 3.2E-16 6.9E-21 168.0 19.2 317 112-435 474-841 (1281)
9 KOG4258|consensus 99.6 1E-14 2.2E-19 151.7 16.0 363 255-647 503-923 (1025)
10 KOG4258|consensus 99.6 1.6E-13 3.4E-18 143.0 18.3 357 61-435 492-920 (1025)
11 PF00041 fn3: Fibronectin type 99.3 8.4E-12 1.8E-16 99.7 9.6 84 554-639 2-85 (85)
12 PF00041 fn3: Fibronectin type 99.2 1.6E-10 3.4E-15 92.3 9.7 83 58-140 1-85 (85)
13 KOG4802|consensus 98.7 8.7E-07 1.9E-11 85.6 17.8 174 56-234 144-341 (516)
14 cd00063 FN3 Fibronectin type 3 98.7 2.1E-07 4.4E-12 75.3 11.5 89 554-645 3-92 (93)
15 PF10179 DUF2369: Uncharacteri 98.7 4.1E-05 8.9E-10 73.7 27.5 241 394-647 8-297 (300)
16 cd00063 FN3 Fibronectin type 3 98.6 7.6E-07 1.7E-11 71.9 11.4 86 154-239 1-89 (93)
17 COG3401 Fibronectin type 3 dom 98.6 2E-05 4.2E-10 75.3 21.8 324 271-635 4-331 (343)
18 PF10179 DUF2369: Uncharacteri 98.5 0.00022 4.7E-09 68.9 26.2 239 294-546 10-296 (300)
19 KOG4802|consensus 98.4 5E-06 1.1E-10 80.5 14.4 180 456-648 154-354 (516)
20 COG3401 Fibronectin type 3 dom 98.3 0.00016 3.5E-09 69.2 21.4 319 183-537 4-333 (343)
21 KOG3632|consensus 98.3 8.4E-06 1.8E-10 87.5 12.3 261 346-638 578-858 (1335)
22 smart00060 FN3 Fibronectin typ 98.2 1.4E-05 2.9E-10 62.6 9.9 77 555-635 4-82 (83)
23 smart00060 FN3 Fibronectin typ 98.1 3.1E-05 6.7E-10 60.5 10.0 76 58-135 2-81 (83)
24 KOG3632|consensus 98.1 0.00015 3.3E-09 78.2 17.1 254 255-539 593-859 (1335)
25 KOG4152|consensus 98.0 0.0004 8.7E-09 69.8 17.9 123 303-431 651-790 (830)
26 KOG0613|consensus 97.9 0.0012 2.6E-08 74.7 20.9 443 159-639 145-614 (1205)
27 KOG4367|consensus 97.6 7.6E-05 1.7E-09 72.7 5.6 89 558-648 443-531 (699)
28 KOG4152|consensus 97.5 0.00037 8E-09 70.0 9.1 127 515-644 652-794 (830)
29 KOG0613|consensus 97.5 0.0088 1.9E-07 68.1 20.0 543 54-638 137-714 (1205)
30 PF09294 Interfer-bind: Interf 97.5 0.00044 9.6E-09 57.3 7.7 88 553-646 4-105 (106)
31 PF01108 Tissue_fac: Tissue fa 97.4 0.0016 3.6E-08 53.7 9.4 83 54-138 19-106 (107)
32 TIGR00864 PCC polycystin catio 97.2 1.3 2.9E-05 55.9 48.5 188 115-335 1664-1865(2740)
33 PF01108 Tissue_fac: Tissue fa 97.1 0.0035 7.7E-08 51.8 8.8 79 551-634 21-103 (107)
34 PF06583 Neogenin_C: Neogenin 97.0 0.00015 3.3E-09 70.1 0.0 25 683-707 1-25 (319)
35 PF09294 Interfer-bind: Interf 97.0 0.0019 4.2E-08 53.4 6.4 87 155-243 4-105 (106)
36 KOG4367|consensus 96.9 0.0013 2.9E-08 64.4 5.2 93 345-439 437-531 (699)
37 TIGR00864 PCC polycystin catio 96.7 3.4 7.4E-05 52.6 43.3 106 207-328 1660-1772(2740)
38 KOG4806|consensus 96.2 0.38 8.3E-06 46.7 16.4 218 204-429 167-438 (454)
39 KOG4228|consensus 96.2 0.038 8.2E-07 62.3 11.3 232 49-336 17-253 (1087)
40 KOG4806|consensus 96.0 0.96 2.1E-05 44.0 17.8 128 515-646 289-446 (454)
41 KOG4228|consensus 95.7 0.12 2.6E-06 58.5 12.2 212 154-430 25-245 (1087)
42 PF09067 EpoR_lig-bind: Erythr 95.3 0.11 2.4E-06 42.1 7.8 81 54-136 5-95 (104)
43 COG4733 Phage-related protein, 94.9 1.5 3.3E-05 48.2 17.0 130 504-638 654-785 (952)
44 PF09067 EpoR_lig-bind: Erythr 94.1 0.54 1.2E-05 38.1 9.0 78 153-232 7-95 (104)
45 PF07495 Y_Y_Y: Y_Y_Y domain; 94.0 0.19 4.1E-06 37.1 6.0 43 590-635 11-53 (66)
46 TIGR00868 hCaCC calcium-activa 93.9 15 0.00033 42.2 23.1 82 344-426 754-854 (863)
47 COG4733 Phage-related protein, 93.8 0.55 1.2E-05 51.4 10.9 122 110-234 658-784 (952)
48 PLN02533 probable purple acid 92.2 1.8 4E-05 45.8 12.2 86 551-649 40-136 (427)
49 PF09240 IL6Ra-bind: Interleuk 92.2 2.6 5.6E-05 34.0 10.6 78 59-137 1-87 (99)
50 PLN02533 probable purple acid 90.9 1.9 4.1E-05 45.7 10.7 82 153-245 40-135 (427)
51 TIGR00868 hCaCC calcium-activa 90.0 42 0.00092 38.8 26.2 87 551-640 755-860 (863)
52 KOG1225|consensus 89.4 0.78 1.7E-05 48.7 6.2 155 451-627 369-524 (525)
53 PF09240 IL6Ra-bind: Interleuk 88.9 11 0.00023 30.4 11.3 76 156-232 1-86 (99)
54 KOG1225|consensus 88.0 1.2 2.6E-05 47.4 6.5 143 255-418 381-524 (525)
55 PF07495 Y_Y_Y: Y_Y_Y domain; 88.0 3.2 7E-05 30.3 7.2 38 197-235 19-56 (66)
56 cd05735 Ig8_DSCAM Eight immuno 84.0 6.7 0.00015 30.8 7.6 76 62-146 5-82 (88)
57 cd05762 Ig8_MLCK Eighth immuno 82.6 3 6.5E-05 33.6 5.1 42 111-157 55-97 (98)
58 PF02010 REJ: REJ domain; Int 80.1 1.2 2.7E-05 47.8 2.7 21 305-325 268-288 (440)
59 KOG1948|consensus 79.6 60 0.0013 36.6 14.6 113 110-227 944-1063(1165)
60 PF14292 SusE: SusE outer memb 79.6 31 0.00067 29.1 10.6 65 566-630 43-121 (122)
61 PF13882 Bravo_FIGEY: Bravo-li 78.3 1.9 4E-05 33.6 2.4 24 674-697 4-27 (90)
62 PF13750 Big_3_3: Bacterial Ig 77.6 51 0.0011 29.3 14.3 32 405-436 116-147 (158)
63 cd05851 Ig3_Contactin-1 Third 71.5 8 0.00017 30.3 4.6 31 112-142 53-84 (88)
64 PF14292 SusE: SusE outer memb 70.8 63 0.0014 27.2 10.4 72 350-421 35-121 (122)
65 PF13750 Big_3_3: Bacterial Ig 66.4 96 0.0021 27.6 12.1 34 614-648 116-149 (158)
66 KOG1948|consensus 64.6 2.6E+02 0.0057 32.0 35.7 80 97-178 508-589 (1165)
67 cd04968 Ig3_Contactin_like Thi 64.3 41 0.00089 26.1 7.4 30 112-141 53-83 (88)
68 PF13754 Big_3_4: Bacterial Ig 64.1 41 0.00088 23.4 6.3 28 611-639 15-42 (54)
69 cd05735 Ig8_DSCAM Eight immuno 63.4 69 0.0015 24.9 8.7 80 159-245 5-85 (88)
70 KOG1378|consensus 61.6 92 0.002 32.8 10.8 87 554-648 44-142 (452)
71 cd05748 Ig_Titin_like Immunogl 58.7 20 0.00043 26.7 4.5 29 111-139 39-68 (74)
72 cd05893 Ig_Palladin_C C-termin 58.2 19 0.00042 27.1 4.2 29 113-141 42-71 (75)
73 PF08329 ChitinaseA_N: Chitina 57.8 94 0.002 26.5 8.5 71 566-646 36-107 (133)
74 COG3979 Uncharacterized protei 56.5 26 0.00056 31.9 5.4 85 554-648 7-92 (181)
75 cd05725 Ig3_Robo Third immunog 55.7 19 0.00041 26.4 3.8 28 112-139 35-63 (69)
76 KOG4194|consensus 55.4 1.3E+02 0.0029 32.8 10.8 116 115-238 578-700 (873)
77 cd05762 Ig8_MLCK Eighth immuno 55.3 44 0.00094 26.8 6.1 43 206-248 55-97 (98)
78 cd05876 Ig3_L1-CAM Third immun 55.1 24 0.00052 26.1 4.3 28 112-139 36-64 (71)
79 PF11344 DUF3146: Protein of u 54.9 8.3 0.00018 28.4 1.5 15 616-630 66-80 (80)
80 cd05763 Ig_1 Subgroup of the i 54.8 42 0.00092 25.0 5.7 29 113-141 41-70 (75)
81 PHA02579 7 baseplate wedge sub 54.4 41 0.00089 37.2 7.1 83 556-646 9-102 (1030)
82 PF13205 Big_5: Bacterial Ig-l 54.3 1.2E+02 0.0025 24.6 9.2 67 567-635 22-92 (107)
83 cd05892 Ig_Myotilin_C C-termin 53.1 30 0.00066 26.0 4.6 28 113-140 42-70 (75)
84 PF08329 ChitinaseA_N: Chitina 53.0 1.4E+02 0.0031 25.5 8.8 66 68-140 35-101 (133)
85 cd04972 Ig_TrkABC_d4 Fourth do 52.2 55 0.0012 25.5 6.2 29 112-140 56-85 (90)
86 cd05870 Ig5_NCAM-2 Fifth immun 52.1 39 0.00085 27.0 5.4 29 112-140 64-93 (98)
87 cd05865 Ig1_NCAM-1 First immun 51.0 79 0.0017 25.2 6.9 29 112-140 60-90 (96)
88 PF10342 GPI-anchored: Ser-Thr 49.9 1.2E+02 0.0027 23.7 8.3 61 566-629 11-78 (93)
89 cd05723 Ig4_Neogenin Fourth im 49.8 21 0.00045 26.4 3.2 26 115-140 41-66 (71)
90 PF07353 Uroplakin_II: Uroplak 49.3 67 0.0015 27.9 6.2 41 608-649 100-140 (184)
91 PHA02579 7 baseplate wedge sub 49.3 84 0.0018 35.0 8.4 86 450-546 7-102 (1030)
92 PF02010 REJ: REJ domain; Int 48.7 12 0.00026 40.2 2.5 30 616-646 268-297 (440)
93 cd05742 Ig1_VEGFR_like First i 47.8 1.1E+02 0.0023 23.4 7.2 72 62-141 5-79 (84)
94 cd05760 Ig2_PTK7 Second immuno 47.2 68 0.0015 24.1 5.8 34 112-145 38-72 (77)
95 cd05852 Ig5_Contactin-1 Fifth 46.8 25 0.00054 26.3 3.2 30 112-141 39-69 (73)
96 cd04973 Ig1_FGFR First immunog 46.7 83 0.0018 23.8 6.3 24 113-136 46-70 (79)
97 PF13754 Big_3_4: Bacterial Ig 45.5 79 0.0017 22.0 5.3 27 209-236 16-42 (54)
98 cd04976 Ig2_VEGFR Second immun 44.8 34 0.00074 25.3 3.7 28 112-139 35-63 (71)
99 cd05861 Ig1_PDGFR-alphabeta Fr 44.5 1.4E+02 0.0031 22.9 7.4 65 62-135 5-70 (84)
100 cd05737 Ig_Myomesin_like_C C-t 44.4 46 0.00099 26.2 4.6 27 112-138 58-85 (92)
101 cd05894 Ig_C5_MyBP-C C5 immuno 44.3 55 0.0012 25.4 5.0 27 112-138 52-79 (86)
102 KOG3515|consensus 43.9 36 0.00078 38.2 5.0 77 115-197 658-734 (741)
103 cd05743 Ig_Perlecan_D2_like Im 43.9 78 0.0017 23.8 5.7 31 112-142 42-73 (78)
104 PF09423 PhoD: PhoD-like phosp 43.9 72 0.0016 34.4 7.5 37 610-649 64-100 (453)
105 cd05745 Ig3_Peroxidasin Third 43.8 25 0.00053 26.3 2.8 28 112-139 40-68 (74)
106 KOG3515|consensus 43.2 3.5E+02 0.0076 30.9 12.3 76 514-596 658-733 (741)
107 PF05454 DAG1: Dystroglycan (D 42.9 8.1 0.00017 37.9 0.0 28 674-701 174-204 (290)
108 cd05736 Ig2_Follistatin_like S 42.0 80 0.0017 23.5 5.5 34 112-145 39-73 (76)
109 cd05854 Ig6_Contactin-2 Sixth 41.3 31 0.00067 26.7 3.1 35 112-146 47-82 (85)
110 cd05858 Ig3_FGFR-2 Third immun 41.3 50 0.0011 25.8 4.4 32 112-143 55-87 (90)
111 cd05891 Ig_M-protein_C C-termi 41.2 1.2E+02 0.0026 23.8 6.6 27 113-139 59-86 (92)
112 cd05744 Ig_Myotilin_C_like Imm 41.1 61 0.0013 24.3 4.6 28 113-140 42-70 (75)
113 PF11344 DUF3146: Protein of u 40.2 20 0.00044 26.5 1.6 15 516-530 66-80 (80)
114 cd04974 Ig3_FGFR Third immunog 39.2 41 0.00089 26.3 3.6 33 113-145 56-89 (90)
115 cd05868 Ig4_NrCAM Fourth immun 39.0 43 0.00093 25.2 3.5 31 113-143 42-73 (76)
116 cd05746 Ig4_Peroxidasin Fourth 38.5 36 0.00079 24.9 3.0 28 112-139 36-64 (69)
117 cd04978 Ig4_L1-NrCAM_like Four 38.0 53 0.0011 24.4 3.9 29 112-140 41-70 (76)
118 cd05864 Ig2_VEGFR-2 Second imm 37.2 61 0.0013 24.0 4.0 31 112-142 34-65 (70)
119 cd05771 IgC_Tapasin_R Tapasin- 36.6 2.5E+02 0.0054 24.1 8.5 33 113-145 2-35 (139)
120 PF10342 GPI-anchored: Ser-Thr 36.3 1.5E+02 0.0031 23.2 6.4 58 70-130 12-78 (93)
121 cd02848 Chitinase_N_term Chiti 36.3 2.4E+02 0.0051 23.0 9.0 72 566-645 32-103 (106)
122 cd05867 Ig4_L1-CAM_like Fourth 36.3 53 0.0012 24.6 3.7 28 112-139 41-69 (76)
123 cd05853 Ig6_Contactin-4 Sixth 36.2 1E+02 0.0023 23.9 5.3 35 112-146 47-82 (85)
124 cd05732 Ig5_NCAM-1_like Fifth 35.3 66 0.0014 25.4 4.3 28 112-139 62-90 (96)
125 cd04969 Ig5_Contactin_like Fif 34.8 41 0.00089 24.9 2.8 29 112-140 39-68 (73)
126 cd05730 Ig3_NCAM-1_like Third 34.8 2.2E+02 0.0048 22.2 7.7 34 112-145 58-92 (95)
127 cd05731 Ig3_L1-CAM_like Third 34.0 57 0.0012 23.8 3.5 27 112-138 36-63 (71)
128 cd05726 Ig4_Robo Fhird immunog 34.0 53 0.0012 25.6 3.5 34 113-146 48-82 (90)
129 cd05863 Ig2_VEGFR-3 Second imm 33.4 86 0.0019 23.0 4.2 28 112-139 31-59 (67)
130 cd04971 Ig_TrKABC_d5 Fifth dom 33.2 1.7E+02 0.0037 22.3 6.1 27 113-139 47-74 (81)
131 PF04775 Bile_Hydr_Trans: Acyl 32.2 68 0.0015 27.2 3.9 41 609-650 4-44 (126)
132 KOG4194|consensus 31.8 1.4E+02 0.0031 32.5 6.8 55 103-157 660-715 (873)
133 cd05750 Ig_Pro_neuregulin Immu 31.8 1.7E+02 0.0037 21.4 5.9 27 112-138 43-70 (75)
134 COG3979 Uncharacterized protei 31.4 95 0.0021 28.3 5.0 75 153-232 4-78 (181)
135 cd05765 Ig_3 Subgroup of the i 30.6 42 0.00091 25.4 2.3 28 112-139 47-75 (81)
136 cd05728 Ig4_Contactin-2-like F 29.5 52 0.0011 25.4 2.7 27 113-139 52-79 (85)
137 cd05748 Ig_Titin_like Immunogl 29.5 1.5E+02 0.0032 21.8 5.2 27 206-232 39-65 (74)
138 TIGR03000 plancto_dom_1 Planct 28.3 1.1E+02 0.0023 23.1 3.7 31 604-634 23-54 (75)
139 cd05773 Ig8_hNephrin_like Eigh 27.9 2.3E+02 0.0049 23.1 6.4 32 112-143 69-102 (109)
140 cd05862 Ig1_VEGFR First immuno 25.0 3.2E+02 0.007 21.0 6.4 32 112-143 50-82 (86)
141 cd05856 Ig2_FGFRL1-like Second 24.6 90 0.002 23.4 3.3 26 112-137 48-74 (82)
142 cd05740 Ig_CEACAM_D4 Fourth im 23.8 1.3E+02 0.0028 23.6 4.0 26 112-137 55-81 (91)
143 KOG1378|consensus 23.8 9.1E+02 0.02 25.8 11.6 87 57-149 42-142 (452)
144 cd05857 Ig2_FGFR Second immuno 23.3 3.3E+02 0.0072 20.5 6.5 28 112-139 51-79 (85)
145 cd04970 Ig6_Contactin_like Six 23.2 77 0.0017 24.3 2.6 35 112-146 47-82 (85)
146 cd05758 Ig5_KIRREL3-like Fifth 22.9 3.7E+02 0.008 21.2 6.7 26 113-138 65-92 (98)
147 cd05724 Ig2_Robo Second immuno 22.9 2.7E+02 0.0059 21.0 5.8 27 112-138 51-78 (86)
148 PF07532 Big_4: Bacterial Ig-l 22.4 2.9E+02 0.0062 19.5 5.7 33 545-577 7-39 (59)
149 KOG3834|consensus 22.2 1.6E+02 0.0034 30.6 4.9 69 558-627 66-137 (462)
150 cd05854 Ig6_Contactin-2 Sixth 22.0 3.5E+02 0.0075 20.8 6.1 35 207-241 47-81 (85)
151 PF09423 PhoD: PhoD-like phosp 21.9 1.3E+02 0.0028 32.4 4.9 47 510-562 64-110 (453)
152 cd05869 Ig5_NCAM-1 Fifth immun 21.0 94 0.002 24.7 2.7 28 112-139 63-91 (97)
153 cd04977 Ig1_NCAM-1_like First 20.9 4.1E+02 0.0089 20.7 6.9 25 112-136 57-82 (92)
154 cd05751 Ig1_LILRB1_like First 20.8 4.1E+02 0.0088 20.6 7.1 36 110-145 51-88 (91)
155 PF14509 GH97_C: Glycosyl-hydr 20.8 1.1E+02 0.0024 24.8 3.0 59 574-632 3-64 (103)
156 cd05855 Ig_TrkB_d5 Fifth domai 20.6 1.3E+02 0.0028 23.0 3.3 27 113-139 45-72 (79)
No 1
>KOG4221|consensus
Probab=100.00 E-value=4.2e-73 Score=599.14 Aligned_cols=657 Identities=42% Similarity=0.718 Sum_probs=560.4
Q ss_pred CchhhhccceeeecCCCCCCCCCCccccccceeeecccCCCCCCcceeeccccCCCCCCcccEEEEEcCcEEEEEEcCCC
Q psy241 2 AGNIQASSLLAISDMDPSSSTPPNQYHLTSTTSMTASPLDTSTGSIEAINETLTLPSAPQSVSAIMVGPRSVALRWLPPT 81 (753)
Q Consensus 2 ~g~~~a~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~P~~l~~~~~~~~si~lsW~~~~ 81 (753)
||++||+|+|.|.... +.......|.+|+++.+..+..++++++|.+|.
T Consensus 404 ~G~a~a~a~l~vv~~p-------------------------------~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~ 452 (1381)
T KOG4221|consen 404 AGSAQAAAQLEVVPQP-------------------------------ASASSDLLPSAPRDLVANLVSSRFIQLTWRPPA 452 (1381)
T ss_pred cccccchhhheeccCC-------------------------------cccccCccccCCcceecccccceeEEEeecCcc
Confidence 7999999999555441 112224558999999999999999999999999
Q ss_pred CCCCcceEEEEEEEEcCCCCceEEeeccccceE-eeCCcCCCEEEEEEEEEeCCCCccCCCceEEEccCCCCCCCCCcce
Q psy241 82 LPRGEILVYCVLYKREGSERERAYNATARVEAI-IQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNV 160 (753)
Q Consensus 82 ~~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~-i~~L~p~t~Y~~~V~a~~~~g~~~~s~~~~~~t~~~~~~P~~p~~l 160 (753)
..++.+..|.+.|...+..+++..+........ +.+|+|.+.|.|+|.|.|..|.+.++..+.+.+.++ +|..+
T Consensus 453 ~~~g~i~~~~v~~~~~~~~rer~~~tss~g~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pE-----gp~~~ 527 (1381)
T KOG4221|consen 453 QISGNISTYTVFYKVEGDVRERLQNTSSPGIQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPE-----GPVQL 527 (1381)
T ss_pred ccCCCcceEEEEEecCCchhhhheeccCCceEEEeeecccceeEEEEEeccCcccCCccCCceEEecCCC-----CCccc
Confidence 888899999999999988888888877744777 999999999999999999999999999999998764 33338
Q ss_pred EEeeecCcEEEEEEeCCCCCCCcceEEEEEEEEcCCcceEEEeecccEEEEcCCCCCcEEEEEEEEEeCCCCCCCCceeE
Q psy241 161 NIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELS 240 (753)
Q Consensus 161 ~~~~~~~~sv~lsW~~p~~~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~~~~s~~~~ 240 (753)
++...+..++.+.|++|...|+++.+|++.|...+.+.+..+..+.++++|.||++.++|.|+|.|+|..|.|..|..+.
T Consensus 528 ~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~~~~~~~~~~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~ 607 (1381)
T KOG4221|consen 528 QAYATSPTTILVTWEPPPFGNGPITGYKLFYSEDDTGKELRVENNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADIT 607 (1381)
T ss_pred cccccCcceEEEEecCCCCCCCCceEEEEEEEcCCCCceEEEecCccEEEeecCCCccceEEEEEEecCCCCCCCCCceE
Confidence 88899999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCC---------cEEEEEeCCCCCCCCceeeEEEEEEEEcCccCCCCcEEEecCceeEEEEcCCCCCCe
Q psy241 241 VQTLSDKPSEPPAN---------SITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTT 311 (753)
Q Consensus 241 ~~t~~~~p~~~~~~---------si~l~W~~p~~~~~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~ 311 (753)
+.|..+.|+.||.+ +|+|+|.+|.....|+.+.+|+|+|+....... .....+.++.+.+.+.+|+|++.
T Consensus 608 V~Tlsd~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~~-~~~t~v~~n~~~~l~~~Lep~T~ 686 (1381)
T KOG4221|consen 608 VRTLSDVPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNGQITGYKIRYRKLSREDE-VNETVVKGNTTQYLFNGLEPNTQ 686 (1381)
T ss_pred EEeccCCCCCCCcceEEEecCCCeEEEEccCCCcccccceEEEEEEEecccCcccc-cceeecccchhhhHhhcCCCCce
Confidence 99999999999996 999999999999999999999999997654333 22333555888999999999999
Q ss_pred EEEEEEEEeCCCCCCCCcceeeeeeeccCCCcccCCCCcceeeecCCCCeEEEEEeCCCCCCcceeEEEEEEeeC--CCC
Q psy241 312 YQIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKG--VPD 389 (753)
Q Consensus 312 Y~i~V~a~~~~g~~~~s~~~~~~t~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~~~~~~~~i~~Y~v~~~~~--~~~ 389 (753)
|.|+|.|++..|.|++|+|..+.|+..+.++ .+|.+|..|.+.... +++.|+|.|+...+..+.+|.|.|... ..+
T Consensus 687 Y~vrIsa~t~nGtGpaS~w~~aeT~~~d~~e-~vp~~ps~l~~~~g~-~si~vsW~Pp~~~~~~vrgY~ig~r~g~~~p~ 764 (1381)
T KOG4221|consen 687 YRVRISAMTVNGTGPASEWVSAETPESDLDE-RVPGKPSELHVHPGS-NSIVVSWTPPPHPNIVVRGYKIGYRPGSGIPD 764 (1381)
T ss_pred EEEEEEEeccCCCCCcccceeccCccccccc-cCCCCCceeeeccCc-eeEEEEeCCCCChhhhhcceEEeeecccCCCC
Confidence 9999999999999999999999999988887 678888888877777 999999999999888999999999543 343
Q ss_pred ccEEEEecCcccEEEeCCCCCCCeEEEEEEEEcCCCCCCCceeEEEecCCCCC--CCCCCCCCCceeEEEecCCCeEEEE
Q psy241 390 EFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPP--QAPKVLIPPMGLKSEVLSPYSMRIS 467 (753)
Q Consensus 390 ~~~~~~~~~~~~~~~i~~L~p~~~Y~v~V~a~~~~G~~~~s~~~~~t~~~~~p--~~~~p~~~p~~l~~~~~~~~sv~v~ 467 (753)
... +.++.....+.|..|.++..|.|+++|+|..|+|.+......+.....+ ....|+.+|..+++...+.++|.|.
T Consensus 765 ~~t-Irl~~~~s~y~l~~Le~~~~YvVkL~AfNn~gdG~p~y~~~~tR~~~~~~~~v~tp~~ppvgv~A~~~S~tsI~v~ 843 (1381)
T KOG4221|consen 765 TGT-IRLDEKVSYYNLEQLEPNRDYVVKLRAFNNHGDGNPIYESVKTRSATDPTSPVDTPMLPPVGVRANALSSTSIRVT 843 (1381)
T ss_pred Ccc-EEecceeeEEEEEecccCceEEEEEEEeccCCCCcceeeeeeeccCCCcCCcCCCCCCCcccccccccccceEEEE
Confidence 444 8899999999999999999999999999999999999888887753322 2235788999999999999999999
Q ss_pred EeCCCCCcccccCCCCccEEEEEEEeecCCCCCceEEeccccceEEecCcccCceeEEEEEEEe-CCCCCcceEEEEeee
Q psy241 468 WIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVR-AKKESEWSMIVLNTT 546 (753)
Q Consensus 468 W~~p~~~~~~~~~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~~-~~g~s~~s~~~~~~t 546 (753)
|.... ++ ......|.|+|...+-.+.......+.++.++.+.+|+|++.|+|.|.++. +...+.|++.+..+|
T Consensus 844 w~~~~-----~~-t~~~~~yTVr~~~~gi~~~~~~~~~~~t~ls~~v~glkpnt~yEfav~~~~~~~r~stwsmsv~~~t 917 (1381)
T KOG4221|consen 844 WADNK-----DQ-TTDNRIYTVRWSLTGIRNGTLYRYDNSTDLSYLVGGLKPNTPYEFAVMVVKRNRRESTWSMSVENRT 917 (1381)
T ss_pred EecCC-----Cc-cccceEEEEEEeecccccceeEEEecccccceeccCcCcCChhhhhhhhhhccCcCCcccceeeeee
Confidence 99731 12 346679999998554335666667888999999999999999999999987 677899999999999
Q ss_pred cCCCCCCCCcceEEeecCCCCeeEEEEeeCCCCCCCceeEEEEEEEeCCCC--CceEEEEeeCceeEEEEcCCCCCCEEE
Q psy241 547 QEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNT--DQWIEESVVGDKMSTNVRGLEPGRIYY 624 (753)
Q Consensus 547 ~~~~p~~~P~~l~~~~~~~~~~~v~l~W~~p~~~~g~i~~Y~V~~~~~~~~--~~~~~~~~~~~~~~~~l~~L~p~t~Y~ 624 (753)
.+.+|..||+++.+.... ..+++.+.|.+|...||.|++|.|+|..+... .+|....+.++...+.+.+|.+++.|.
T Consensus 918 le~~P~sPP~d~tv~p~e-~P~~v~v~WqPp~e~nG~I~~Yii~Ys~~~n~~~~dWt~~t~~g~~L~~~v~~l~p~t~yf 996 (1381)
T KOG4221|consen 918 LELVPSSPPRDLTVQPDE-KPTTVIVHWQPPTEPNGEITEYIIYYSTDGNTPEHDWTIETTAGAELSHQVPNLDPDTGYF 996 (1381)
T ss_pred cccCCCCCChhceecccC-CCCccccccCCCcCCCCceeeEEEEEecCCCCchhhceeeecccchhhhccCCCCCCCceE
Confidence 999999999999999865 67999999999999999999999999887665 789888999999999999999999999
Q ss_pred EEEEEEcCCCCCCCCCceEEEcCCCC----------------CCCC--CCC----------------C--CCCcc-eeEE
Q psy241 625 FKIKARNSAGSSPYSSTVTWTTASDM----------------QEAG--GIP----------------N--SNQVS-NTMI 667 (753)
Q Consensus 625 ~~V~A~~~~G~g~~S~~~~~~T~~~~----------------~~~~--~~~----------------~--~~~i~-~~il 667 (753)
|+|+|++..|.|++|..+.++|.... ++.. .++ . .+.|. +.++
T Consensus 997 fkiQAr~~kG~gp~s~~v~y~t~~~~~~~~~d~~~~~gt~~~~p~~~~~~~~~~~~~~~~~~ll~i~l~~~~vi~i~~~~ 1076 (1381)
T KOG4221|consen 997 FKIQARNEKGPGPFSSPVLYETSKAEIVMINDQEAERGTGKEPPELFYQFAHGSETNLVDSNLLDIILVAVAVILILVLL 1076 (1381)
T ss_pred EEEEeeccCCCCccccceeeeccccccccccchhhccccCCCCCcccccccccccccccccceeeeeeehhhhHHHHHHh
Confidence 99999999999999999999998752 0000 111 0 11111 2222
Q ss_pred EEEEEe---------------cCCcccCCCCCCCCCCcccccchhcccccccc
Q psy241 668 LYVKGN---------------TGGKQQAPATQINPPDLWIHHDQMELKAIEKS 705 (753)
Q Consensus 668 ~~~~~c---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 705 (753)
+++++| ++|+++.-.+..+|+|+|||+++||+|+.+|.
T Consensus 1077 ~v~v~C~~r~~~~~~~~r~~~~~~~~~g~s~~~~ppDLwI~~~~~elkn~~k~ 1129 (1381)
T KOG4221|consen 1077 LVLVTCRRRSGSNRKKKRASIKKGKPKGISGDFKPPDLWIHHERMELKNIEKP 1129 (1381)
T ss_pred hheeEEeccccCCcCccceeeeccCCCCCcCCCCCCccccccchhhcCCCCCC
Confidence 233455 34555555667889999999999999998887
No 2
>KOG4221|consensus
Probab=100.00 E-value=5e-44 Score=379.27 Aligned_cols=591 Identities=24% Similarity=0.343 Sum_probs=444.9
Q ss_pred ccceeeecccCCCCCCcceeeccccCCC---CCCcccEEEEEcCcEEEEEEcCCCCCCCcceEEEEEEEEcCC----CCc
Q psy241 30 TSTTSMTASPLDTSTGSIEAINETLTLP---SAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGS----ERE 102 (753)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P---~~P~~l~~~~~~~~si~lsW~~~~~~~~~~~~Y~v~~~~~~~----~~~ 102 (753)
.+..|.|.+....++....+..++..+| ..|.++.+.+ +..+.|+.+.... ++..|..+ ..+. ..+
T Consensus 302 dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e----~~die~ec~~~g~-p~p~v~w~--kNgd~~ipsdy 374 (1381)
T KOG4221|consen 302 DSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHE----SMDIEFECPVSGK-PIPTVRWY--KNGDRIIPSDY 374 (1381)
T ss_pred cCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeeee----ccceeEeCCCCCC-CcceEEEE--ecCcccCcccc
Confidence 4678999999988877777777666655 4566666654 7789998876533 56665544 3322 222
Q ss_pred eEEeeccccceEeeCCcCCCEEEEEEEEEeCCCCccCCCceEEEccCC----CCCCCCCcceEEeeecCcEEEEEEeCCC
Q psy241 103 RAYNATARVEAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPE----DHVPSPPLNVNIPVVGTSSLLVTWEKPT 178 (753)
Q Consensus 103 ~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~~~~s~~~~~~t~~~----~~~P~~p~~l~~~~~~~~sv~lsW~~p~ 178 (753)
........ .. |.++---..-.|+|.|.|+.|.......+.+.+.+. ...|.+|.++.+.....+.+.++|.+|.
T Consensus 375 ~ki~~~~~-lr-Ilgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~ 452 (1381)
T KOG4221|consen 375 FKIVGGGN-LR-ILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPA 452 (1381)
T ss_pred eEecCCCC-cE-EEEEecccchhhhhhhccCcccccchhhheeccCCcccccCccccCCcceecccccceeEEEeecCcc
Confidence 22222222 23 333333344456999999999766666554443321 2467789999999999999999999998
Q ss_pred CCCCcceEEEEEEEEcCCcceEEEee--cccEEEEcCCCCCcEEEEEEEEEeCCCCCCCCceeEEEecCCCCCCCCCC--
Q psy241 179 VTNGEIKHYTLYYLEEDTSVERHVVT--PQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPAN-- 254 (753)
Q Consensus 179 ~~~~~~~~Y~v~~~~~~~~~~~~~~~--~~~~~~i~~L~p~t~Y~~~V~a~n~~g~~~~s~~~~~~t~~~~p~~~~~~-- 254 (753)
..++++..|.+.|.......+..+.+ .....++.+|+|.+.|.|+|+|.|..|.+..+.++.+.+.+..|......
T Consensus 453 ~~~g~i~~~~v~~~~~~~~rer~~~tss~g~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pEgp~~~~a~at 532 (1381)
T KOG4221|consen 453 QISGNISTYTVFYKVEGDVRERLQNTSSPGIQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPEGPVQLQAYAT 532 (1381)
T ss_pred ccCCCcceEEEEEecCCchhhhheeccCCceEEEeeecccceeEEEEEeccCcccCCccCCceEEecCCCCCcccccccc
Confidence 88899999999998777655533322 23788899999999999999999999999999999999998866552222
Q ss_pred ---cEEEEEeCCCCCCCCceeeEEEEEEEEcCccCCCCcEEEecCceeEEEEcCCCCCCeEEEEEEEEeCCCCCCCCcce
Q psy241 255 ---SITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWF 331 (753)
Q Consensus 255 ---si~l~W~~p~~~~~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~i~V~a~~~~g~~~~s~~~ 331 (753)
++.+.|++|. ..|+++.+|++.|...+.. ....+..+..+++|.||++.|.|.|+|.|+|..|.|..|..+
T Consensus 533 s~~ti~v~WepP~--~~n~~I~~yk~~ys~~~~~----~~~~~~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i 606 (1381)
T KOG4221|consen 533 SPTTILVTWEPPP--FGNGPITGYKLFYSEDDTG----KELRVENNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADI 606 (1381)
T ss_pred CcceEEEEecCCC--CCCCCceEEEEEEEcCCCC----ceEEEecCccEEEeecCCCccceEEEEEEecCCCCCCCCCce
Confidence 9999999998 5799999999999988432 345567788999999999999999999999999999999999
Q ss_pred eeeeeeccCCCcccCCCC-cceeeecCCCCeEEEEEeCCCC--CCcceeEEEEEEeeCCCCcc-EEEEecCcccEEEeCC
Q psy241 332 SAETFSQDLGEFTVPDIP-ASLKARPGGPSSIIVSWTPPAD--QSIMVRGFTLGWGKGVPDEF-VKQILDVKQRSDEITG 407 (753)
Q Consensus 332 ~~~t~~~~~~~~~~p~~p-~~~~~~~~~~~~v~l~W~~~~~--~~~~i~~Y~v~~~~~~~~~~-~~~~~~~~~~~~~i~~ 407 (753)
.+.|.. +.|++| .|+++...++++|.|+|.+|.. .+|.+.+|.|+|........ .+..+.++.+.+.+.+
T Consensus 607 ~V~Tls------d~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~~~~~t~v~~n~~~~l~~~ 680 (1381)
T KOG4221|consen 607 TVRTLS------DVPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNGQITGYKIRYRKLSREDEVNETVVKGNTTQYLFNG 680 (1381)
T ss_pred EEEecc------CCCCCCCcceEEEecCCCeEEEEccCCCcccccceEEEEEEEecccCcccccceeecccchhhhHhhc
Confidence 999988 677665 4599999999999999998764 35899999999986544333 2356667888999999
Q ss_pred CCCCCeEEEEEEEEcCCCCCCCceeEEEecCCCCCCCCCCCCCCceeEEEecCCCeEEEEEeCCCCCcccccCCCCccEE
Q psy241 408 LEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHY 487 (753)
Q Consensus 408 L~p~~~Y~v~V~a~~~~G~~~~s~~~~~t~~~~~p~~~~p~~~p~~l~~~~~~~~sv~v~W~~p~~~~~~~~~~~~~~~Y 487 (753)
|+|++.|.|+|.|.+..|.|+++......+....++.+. ..+|..|.+ ....+++.+.|.+|..++ -.+.+|
T Consensus 681 Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~~d~~e~v-p~~ps~l~~-~~g~~si~vsW~Pp~~~~------~~vrgY 752 (1381)
T KOG4221|consen 681 LEPNTQYRVRISAMTVNGTGPASEWVSAETPESDLDERV-PGKPSELHV-HPGSNSIVVSWTPPPHPN------IVVRGY 752 (1381)
T ss_pred CCCCceEEEEEEEeccCCCCCcccceeccCccccccccC-CCCCceeee-ccCceeEEEEeCCCCChh------hhhcce
Confidence 999999999999999999999998877776655444222 225555544 446789999999998765 457799
Q ss_pred EEEEEeecCCCCCceEEeccccceEEecCcccCceeEEEEEEEeCCCCCcceE-EEEeeec------CCCCCCCCcceEE
Q psy241 488 LVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSM-IVLNTTQ------EAAPASAPRDLTV 560 (753)
Q Consensus 488 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~~~~g~s~~s~-~~~~~t~------~~~p~~~P~~l~~ 560 (753)
.|.|+...+........++.....|.|+.|+++..|.|+++|.|..|.|.... .+.++.. ...|..+|..++.
T Consensus 753 ~ig~r~g~~~p~~~tIrl~~~~s~y~l~~Le~~~~YvVkL~AfNn~gdG~p~y~~~~tR~~~~~~~~v~tp~~ppvgv~A 832 (1381)
T KOG4221|consen 753 KIGYRPGSGIPDTGTIRLDEKVSYYNLEQLEPNRDYVVKLRAFNNHGDGNPIYESVKTRSATDPTSPVDTPMLPPVGVRA 832 (1381)
T ss_pred EEeeecccCCCCCccEEecceeeEEEEEecccCceEEEEEEEeccCCCCcceeeeeeeccCCCcCCcCCCCCCCcccccc
Confidence 99997554333456677888999999999999999999999999999886432 2222221 1125667777777
Q ss_pred eecCCCCeeEEEEeeCC-CCCCCceeEEEEEEEeCCCCCceEEEEeeCceeEEEEcCCCCCCEEEEEEEEEcCCCC-CCC
Q psy241 561 VSKEGDPSLVNLNWQPP-KSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGS-SPY 638 (753)
Q Consensus 561 ~~~~~~~~~v~l~W~~p-~~~~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~-g~~ 638 (753)
... +.++|.+.|..- +. -.....|.|.|...+-..-...........++.+.+|+|++.|.|-|++.-..+. |.|
T Consensus 833 ~~~--S~tsI~v~w~~~~~~-t~~~~~yTVr~~~~gi~~~~~~~~~~~t~ls~~v~glkpnt~yEfav~~~~~~~r~stw 909 (1381)
T KOG4221|consen 833 NAL--SSTSIRVTWADNKDQ-TTDNRIYTVRWSLTGIRNGTLYRYDNSTDLSYLVGGLKPNTPYEFAVMVVKRNRRESTW 909 (1381)
T ss_pred ccc--ccceEEEEEecCCCc-cccceEEEEEEeecccccceeEEEecccccceeccCcCcCChhhhhhhhhhccCcCCcc
Confidence 776 889999999983 22 3356789999973322111122244556678999999999999999998764443 889
Q ss_pred CCceEEEcCCCCCC
Q psy241 639 SSTVTWTTASDMQE 652 (753)
Q Consensus 639 S~~~~~~T~~~~~~ 652 (753)
|..+..+|....+.
T Consensus 910 smsv~~~tle~~P~ 923 (1381)
T KOG4221|consen 910 SMSVENRTLELVPS 923 (1381)
T ss_pred cceeeeeecccCCC
Confidence 99999999875443
No 3
>KOG3513|consensus
Probab=100.00 E-value=1.2e-35 Score=318.62 Aligned_cols=627 Identities=19% Similarity=0.227 Sum_probs=426.4
Q ss_pred cceeeecccCCCCCCcceeeccccCCCC---CCcccEEEEEcCcEEEEEEcCCCCCCCcceEEEEEEEEcCCCCceEEe-
Q psy241 31 STTSMTASPLDTSTGSIEAINETLTLPS---APQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYN- 106 (753)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~---~P~~l~~~~~~~~si~lsW~~~~~~~~~~~~Y~v~~~~~~~~~~~~~~- 106 (753)
...|.|.+........-........+|. .|.+..+.. ...+.+.-.+... +.-. |.|...+........
T Consensus 306 ~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~~~--gs~v~~eC~a~g~---P~p~--v~WlkNg~pl~~~~r~ 378 (1051)
T KOG3513|consen 306 AGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQDTEADT--GSNVTLECKASGK---PNPT--VKWLKNGEPLEPAERD 378 (1051)
T ss_pred CeEEEEEEecccccceeeEEEEEecCchhhcccceeEecC--CCCeEEEEEecCC---CCCc--eEEeeCCeecCccCCC
Confidence 4567777766666555444444555553 333333322 2222222222111 1112 334444432221111
Q ss_pred --eccccceE-eeCCcCCCEEEEEEEEEeCCCCccCCCceEEEccCCCCCCCCCcceEEeeecCcEEEEEEeCCCCCCCc
Q psy241 107 --ATARVEAI-IQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGE 183 (753)
Q Consensus 107 --~~~~~~~~-i~~L~p~t~Y~~~V~a~~~~g~~~~s~~~~~~t~~~~~~P~~p~~l~~~~~~~~sv~lsW~~p~~~~~~ 183 (753)
.......+ |.+|++.....|+|.|.|..|....+..+.+.-.... .+..|.+-.+...-...+.|...+-. .
T Consensus 379 ~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~-f~~~p~~~~~~a~~g~~v~i~C~~~a---s- 453 (1051)
T KOG3513|consen 379 PRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPV-FPLNPVERKVMAVVGGTVTIDCKPFA---S- 453 (1051)
T ss_pred cceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCC-CCCCccceEEEEEeCCeEEEeeccCC---C-
Confidence 11123566 9999999999999999999999999888888765332 33344444444555667777776621 1
Q ss_pred ceEEEEEEEEcCCc---ceEEEeecccEEEEcCCCCCcEEEEEEEEEeCCCCCCCCceeEEEecCC---CCCCCCCC---
Q psy241 184 IKHYTLYYLEEDTS---VERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSD---KPSEPPAN--- 254 (753)
Q Consensus 184 ~~~Y~v~~~~~~~~---~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~~~~s~~~~~~t~~~---~p~~~~~~--- 254 (753)
-...+.|...+.. .........-++.|.+......-.+.+.|.|..|.......+.++-... +|......
T Consensus 454 -P~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~v~~g~ 532 (1051)
T KOG3513|consen 454 -PKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTDVKVGE 532 (1051)
T ss_pred -CcceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccchhhhccCc
Confidence 1345555544431 1122222455688899988888889999999999855433333332222 12111111
Q ss_pred cEEEEEeCCCCCCCCceeeEEEEEEEEcCcc----CCCCcEEEecCce-eEEEE--cCCCCCCeEEEEEEEEeCCCCCCC
Q psy241 255 SITVRWQPPSRRGQNGIITGYKLRYKKKDVK----KDKGETVTTAGDR-RLYVI--TGLNKSTTYQIKLWAMNVNGSGPA 327 (753)
Q Consensus 255 si~l~W~~p~~~~~~~~~~~Y~v~~~~~~~~----~~~~~~~~~~~~~-~~~~i--~~L~p~t~Y~i~V~a~~~~g~~~~ 327 (753)
++.|..+.... +-..-.+.|..++.. ............. -.++| ..|+..-.|.+.+++.-+.-.+
T Consensus 533 ~v~l~Ce~shD-----~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~-- 605 (1051)
T KOG3513|consen 533 SVTLTCEASHD-----PSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASA-- 605 (1051)
T ss_pred eEEEEeecccC-----CCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhc--
Confidence 66666665431 122233355544321 0001111122210 12333 3577888999999985322211
Q ss_pred CcceeeeeeeccCCCcccCCCCcceeeecCCCCeEEEEEeCCCCCCcceeEEEEEEeeCCCCccEEE-EecCccc---EE
Q psy241 328 TDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQ-ILDVKQR---SD 403 (753)
Q Consensus 328 s~~~~~~t~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~~~~~~~~i~~Y~v~~~~~~~~~~~~~-~~~~~~~---~~ 403 (753)
...+.+. .+|.+|.++.+...+.+++.|+|.+..+.+++|..|.|+........|..+ .+....+ +.
T Consensus 606 ~A~l~V~---------gpPgpP~~v~~~~i~~t~~~lsW~~g~dn~SpI~~Y~iq~rt~~~~~W~~v~~vp~~~~~~~sa 676 (1051)
T KOG3513|consen 606 RADLLVR---------GPPGPPPDVHVDDISDTTARLSWSPGSDNNSPIEKYTIQFRTPFPGKWKAVTTVPGNITGDESA 676 (1051)
T ss_pred ccceEEe---------cCCCCCCceeEeeeccceEEEEeecCCCCCCCceEEeEEecCCCCCcceEeeECCCcccCccce
Confidence 1112332 578899999999999999999999999988999999999988766666633 3333333 57
Q ss_pred EeCCCCCCCeEEEEEEEEcCCCCCCCceeEEEe-cCCCCCCCCCCCCCCceeEEEecCCCeEEEEEeCCCCCcccccCCC
Q psy241 404 EITGLEPNSDYVISLRAFNEMGDGPQKYESLRT-RNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGE 482 (753)
Q Consensus 404 ~i~~L~p~~~Y~v~V~a~~~~G~~~~s~~~~~t-~~~~~p~~~~p~~~p~~l~~~~~~~~sv~v~W~~p~~~~~~~~~~~ 482 (753)
.+.+|.|...|+|||.|.|..|-|.++..+... +...+| ...|.++.......+.+.++|++..... ..+
T Consensus 677 ~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P-----~~~P~nv~g~g~~~~eLvItW~Pl~~~~----qNG 747 (1051)
T KOG3513|consen 677 TVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAP-----SVNPSNVKGGGGSPTELVITWEPLPEEE----QNG 747 (1051)
T ss_pred eEEccCCCcceEEEEEEEcccccCCCCCCccceecCCCCC-----ccCCccccccCCCCceEEEEeccCCHHH----ccC
Confidence 788999999999999999999999988765443 233333 3489999998989999999999865432 347
Q ss_pred CccEEEEEEEeecCC-CCCceEEeccccceEEec--CcccCceeEEEEEEEeCCCCCcceEEEEeeecCCCCCCCCcceE
Q psy241 483 EGRHYLVRYTHLLGA-SNPRYKYINANITSVQIN--DLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLT 559 (753)
Q Consensus 483 ~~~~Y~v~~~~~~~~-~~~~~~~~~~~~~~~~l~--~L~p~t~Y~~~V~a~~~~g~s~~s~~~~~~t~~~~p~~~P~~l~ 559 (753)
+..+|+|.|+..+.. .+......+.....+.+. ...|.+.|.+.|+|.|+.|+|+.+..+.+...+..|+.+|..+.
T Consensus 748 ~gfgY~Vswr~~g~~~~W~~~~v~~~d~~~~V~~~~st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed~P~~ap~~~~ 827 (1051)
T KOG3513|consen 748 PGFGYRVSWRPQGADKEWKEVIVSNQDQPRYVVSNESTEPFTPYEVKVQAINDQGEGPESQVTVGYSGEDEPPVAPTKLS 827 (1051)
T ss_pred CCceEEEEEEeCCCCcccceeEecccCCceEEEcCCCCCCcceeEEEEEEecCCCCCCCCceEEEEcCCCCCCCCCccce
Confidence 778999999999764 333334444444556554 46679999999999999999999999999999999999999999
Q ss_pred EeecCCCCeeEEEEeeCCCCCCCceeEEEEEEEeCCCC-CceEEEEeeCceeEEEEcCCCCCCEEEEEEEEEcCCCCCCC
Q psy241 560 VVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNT-DQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPY 638 (753)
Q Consensus 560 ~~~~~~~~~~v~l~W~~p~~~~g~i~~Y~V~~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~ 638 (753)
+... +.+.+.|+|++|...||.+++|+|+|+..+.. +......+.++.++..|.||+++|.|.|.|+|.|.+|.|+.
T Consensus 828 ~~~~--s~s~~~v~W~~~~~~nG~l~gY~v~Y~~~~~~~~~~~~~~i~~~~~~~~ltgL~~~T~Y~~~vrA~nsaG~Gp~ 905 (1051)
T KOG3513|consen 828 AKPL--SSSEVNLSWKPPLWDNGKLTGYEVKYWKINEKEGSLSRVQIAGNRTSWRLTGLEPNTKYRFYVRAYTSAGGGPA 905 (1051)
T ss_pred eecc--cCceEEEEecCcCccCCccceeEEEEEEcCCCcccccceeecCCcceEeeeCCCCCceEEEEEEEecCCCCCCC
Confidence 9987 88999999999998899999999999987766 44445567799999999999999999999999999999999
Q ss_pred CCceEEEcCCCCCCCCCCC------C-CCCcceeEEEEEEEe-----cCCcccCCCCCCCCCCcccccchh
Q psy241 639 SSTVTWTTASDMQEAGGIP------N-SNQVSNTMILYVKGN-----TGGKQQAPATQINPPDLWIHHDQM 697 (753)
Q Consensus 639 S~~~~~~T~~~~~~~~~~~------~-~~~i~~~il~~~~~c-----~~~~~~~~~~~~~~~~~~~~~~~~ 697 (753)
|.....+|.+.+|....++ + ++++.++|+...+.| ..++||+..+++.+.+.+++.+..
T Consensus 906 s~~~~~tt~k~pPs~~~~~p~g~~~~~~~~~~~~l~w~~v~~~~nes~v~gYkV~~~~~~~~~~~~~~t~~ 976 (1051)
T KOG3513|consen 906 SSEENVTTKKAPPSQVDIAPPGNFIWKFSASILLLLWLLVSAFENESEVGGYKVLYREDLQNDIEIILTMK 976 (1051)
T ss_pred ccceeccccCCCCcccccCCCcceEEeeeeeEEEEEEeeEEEEeecccCcceEEEEeecccCCceeEeccc
Confidence 9999999999888864322 2 666777777777888 778899988899999888876443
No 4
>KOG3513|consensus
Probab=100.00 E-value=9.5e-35 Score=311.75 Aligned_cols=404 Identities=25% Similarity=0.364 Sum_probs=307.8
Q ss_pred CCcCCCEEEEEEEEEeCCCCccCCCceEEEccCCCCCCCCCcceEEeeecCcEEEEEEeCCCCCCCcceEEEEEEEEcCC
Q psy241 117 GLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDT 196 (753)
Q Consensus 117 ~L~p~t~Y~~~V~a~~~~g~~~~s~~~~~~t~~~~~~P~~p~~l~~~~~~~~sv~lsW~~p~~~~~~~~~Y~v~~~~~~~ 196 (753)
.|+..-.|.+.+.+ ..........+.++. +|.||.+|.+...+.+++.|+|.+..+++++|..|.|+.+....
T Consensus 585 ~l~~~G~Y~C~aqT--~~Ds~s~~A~l~V~g-----pPgpP~~v~~~~i~~t~~~lsW~~g~dn~SpI~~Y~iq~rt~~~ 657 (1051)
T KOG3513|consen 585 SLEDSGKYTCVAQT--ALDSASARADLLVRG-----PPGPPPDVHVDDISDTTARLSWSPGSDNNSPIEKYTIQFRTPFP 657 (1051)
T ss_pred ccccCceEEEEEEE--eecchhcccceEEec-----CCCCCCceeEeeeccceEEEEeecCCCCCCCceEEeEEecCCCC
Confidence 35555566666655 343333344455554 68899999999999999999999999998999999999998877
Q ss_pred cceEEEee---cc---cEEEEcCCCCCcEEEEEEEEEeCCCCCCCCce-eEEEecCCCCCCCCCC---------cEEEEE
Q psy241 197 SVERHVVT---PQ---LSYELTGLSHFTLYSIWVVAHNGNGAGTTSQE-LSVQTLSDKPSEPPAN---------SITVRW 260 (753)
Q Consensus 197 ~~~~~~~~---~~---~~~~i~~L~p~t~Y~~~V~a~n~~g~~~~s~~-~~~~t~~~~p~~~~~~---------si~l~W 260 (753)
..|..+.. .. .+.++.+|.|+..|+|||.|.|..|.|.+|.+ ..++|.+++|...|.+ .+.|+|
T Consensus 658 ~~W~~v~~vp~~~~~~~sa~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~g~g~~~~eLvItW 737 (1051)
T KOG3513|consen 658 GKWKAVTTVPGNITGDESATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVKGGGGSPTELVITW 737 (1051)
T ss_pred CcceEeeECCCcccCccceeEEccCCCcceEEEEEEEcccccCCCCCCccceecCCCCCccCCccccccCCCCceEEEEe
Confidence 77754432 22 25778899999999999999999999999866 6899999999988888 999999
Q ss_pred eCCCCCCCCceeeEEEEEEEEcCccCCCCcEEEecCceeEEEEcC--CCCCCeEEEEEEEEeCCCCCCCCcceeeeeeec
Q psy241 261 QPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITG--LNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQ 338 (753)
Q Consensus 261 ~~p~~~~~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~i~V~a~~~~g~~~~s~~~~~~t~~~ 338 (753)
++.....+||+..+|+|.|+..+....+........+...+.+.+ ..+++.|.++|+|+|..|.|+.+....+.+.+
T Consensus 738 ~Pl~~~~qNG~gfgY~Vswr~~g~~~~W~~~~v~~~d~~~~V~~~~st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~E- 816 (1051)
T KOG3513|consen 738 EPLPEEEQNGPGFGYRVSWRPQGADKEWKEVIVSNQDQPRYVVSNESTEPFTPYEVKVQAINDQGEGPESQVTVGYSGE- 816 (1051)
T ss_pred ccCCHHHccCCCceEEEEEEeCCCCcccceeEecccCCceEEEcCCCCCCcceeEEEEEEecCCCCCCCCceEEEEcCC-
Confidence 999999999999999999999987622223332444445555544 56799999999999999999999988888755
Q ss_pred cCCCcccCCCCcceeeecCCCCeEEEEEeCCCCCCcceeEEEEEEeeCCCCc--cEEEEecCcccEEEeCCCCCCCeEEE
Q psy241 339 DLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDE--FVKQILDVKQRSDEITGLEPNSDYVI 416 (753)
Q Consensus 339 ~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~~~~~~~~i~~Y~v~~~~~~~~~--~~~~~~~~~~~~~~i~~L~p~~~Y~v 416 (753)
..+|.+|+.+.+...+.+.+.|+|+++...||.+.+|+|+|+..+... .....+.++.++..|.||++.+.|.|
T Consensus 817 ----d~P~~ap~~~~~~~~s~s~~~v~W~~~~~~nG~l~gY~v~Y~~~~~~~~~~~~~~i~~~~~~~~ltgL~~~T~Y~~ 892 (1051)
T KOG3513|consen 817 ----DEPPVAPTKLSAKPLSSSEVNLSWKPPLWDNGKLTGYEVKYWKINEKEGSLSRVQIAGNRTSWRLTGLEPNTKYRF 892 (1051)
T ss_pred ----CCCCCCCccceeecccCceEEEEecCcCccCCccceeEEEEEEcCCCcccccceeecCCcceEeeeCCCCCceEEE
Confidence 466789999999999999999999999998999999999999865542 22366779999999999999999999
Q ss_pred EEEEEcCCCCCCCceeEEEecCCCCCCCCCCCCCCceeEEEecCCCeEEEEEeCCCCCcccccCCCCccEEEEEEEeecC
Q psy241 417 SLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLG 496 (753)
Q Consensus 417 ~V~a~~~~G~~~~s~~~~~t~~~~~p~~~~p~~~p~~l~~~~~~~~sv~v~W~~p~~~~~~~~~~~~~~~Y~v~~~~~~~ 496 (753)
.|+|+|.+|.|+.+.....++...+|.. .+..+|. ..........+.+.|....+.. +...+.+|.|.|+....
T Consensus 893 ~vrA~nsaG~Gp~s~~~~~tt~k~pPs~-~~~~p~g-~~~~~~~~~~~~l~w~~v~~~~----nes~v~gYkV~~~~~~~ 966 (1051)
T KOG3513|consen 893 YVRAYTSAGGGPASSEENVTTKKAPPSQ-VDIAPPG-NFIWKFSASILLLLWLLVSAFE----NESEVGGYKVLYREDLQ 966 (1051)
T ss_pred EEEEecCCCCCCCccceeccccCCCCcc-cccCCCc-ceEEeeeeeEEEEEEeeEEEEe----ecccCcceEEEEeeccc
Confidence 9999999999998887776666555542 1222444 3455667889999998765432 34558899999998743
Q ss_pred CCCCceEEeccccceE-EecCcccCceeEEEEEEEeCCCCCcceEE
Q psy241 497 ASNPRYKYINANITSV-QINDLRPSTQYEFTVKVVRAKKESEWSMI 541 (753)
Q Consensus 497 ~~~~~~~~~~~~~~~~-~l~~L~p~t~Y~~~V~a~~~~g~s~~s~~ 541 (753)
..............+ ...++ ...|.+.|++....|.+..+..
T Consensus 967 -~~~~~~~t~~~~~~~~~p~~~--~~~y~i~v~~~~~ggdg~~s~~ 1009 (1051)
T KOG3513|consen 967 -NDIEIILTMKLDAEFPEPSDL--DGKYDIKVRGYSPGGDGTISEE 1009 (1051)
T ss_pred -CCceeEecccccccccCcccc--CCcceeEeccccCCCCCCcCCc
Confidence 222222211111111 22233 2789999999887776654433
No 5
>KOG4222|consensus
Probab=99.88 E-value=1.1e-19 Score=194.13 Aligned_cols=513 Identities=20% Similarity=0.237 Sum_probs=310.7
Q ss_pred eeCCcCCCEEEEEEEEEeCCCCccCCCceEEEccCCCCCCCCCcc----------eEEeeecCcEEEEEEeCCCCCCCcc
Q psy241 115 IQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLN----------VNIPVVGTSSLLVTWEKPTVTNGEI 184 (753)
Q Consensus 115 i~~L~p~t~Y~~~V~a~~~~g~~~~s~~~~~~t~~~~~~P~~p~~----------l~~~~~~~~sv~lsW~~p~~~~~~~ 184 (753)
+....|..+-.|.|.|.|..|.-.++..+.|...+.... .|.+ +.+...+.-.=.+.|..- +...
T Consensus 282 i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~k--kp~dq~v~lg~~vt~pc~~~gnP~PavfW~ke---g~q~ 356 (1281)
T KOG4222|consen 282 IDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGK--KPRDQKVALGGTVTFPCETLGNPPPAVFWLKE---GSQD 356 (1281)
T ss_pred ccccCCCcccceeeeccccccccccccceEEecCccccc--ccCccccccCceEEeeeecCCCCCcceEEecc---Ccce
Confidence 666677778888888888888888888777775433211 1111 111122222223334331 1111
Q ss_pred eEEEEEEEEcCCcceEEEeecccEEEEcCCCCCcEEEEEEEEEeCCCCCCCCcee---EEEecCCCCCCC---------C
Q psy241 185 KHYTLYYLEEDTSVERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQEL---SVQTLSDKPSEP---------P 252 (753)
Q Consensus 185 ~~Y~v~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~~~~s~~~---~~~t~~~~p~~~---------~ 252 (753)
..|-.. .........+.... ..+++++.+-..-.+-..+.+..|.+...... ...+...+|... +
T Consensus 357 llf~~~--p~~~~~r~svs~~g-~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~ 433 (1281)
T KOG4222|consen 357 LLFSAS--PPSSNGRGSVSPTG-TLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLP 433 (1281)
T ss_pred ecccCC--CCCcCccceecCCC-CcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeecccccccc
Confidence 111111 11111112222223 46667776655544445555555554332221 111111111100 0
Q ss_pred CCcEEEEEeCCCCCCCCceeeEEEEEEEEcCccCCCCcEEEecCceeEEEEcCCCCCCeEEEEEEEEeCCCCCCCCccee
Q psy241 253 ANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFS 332 (753)
Q Consensus 253 ~~si~l~W~~p~~~~~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~i~V~a~~~~g~~~~s~~~~ 332 (753)
..+..+-|..... .-.|.|.|...+..-..+......-......+.+|.-...|.++..|.+..|...|+..+.
T Consensus 434 v~s~a~l~c~atg------~P~p~i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~ 507 (1281)
T KOG4222|consen 434 VGSTASLPCSATG------APTPNISWLKDGCNVMNPDSRISQQEIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLT 507 (1281)
T ss_pred cCcccccChhhhC------CCCCCchhhhcccccccCCcccceeeeceeeeeeeecCCCcceeeeccCcccccccceeeE
Confidence 0122222322110 1124555544443211111111111124456677777778899999999999888887655
Q ss_pred eeeeec------cCCCcccCCCCcceeeecCCCCeEEEEEeCCCCCC-cceeEEEEEEe-eCCCCccEEEEecCcccEEE
Q psy241 333 AETFSQ------DLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQS-IMVRGFTLGWG-KGVPDEFVKQILDVKQRSDE 404 (753)
Q Consensus 333 ~~t~~~------~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~~~~~~-~~i~~Y~v~~~-~~~~~~~~~~~~~~~~~~~~ 404 (753)
+.-... ..+....|++|..-.+..++.++++|+|.+....+ +.+.+|.|.+- ......|....-....+.+.
T Consensus 508 v~~~~~s~q~~r~~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~yiieafs~~~~etw~~ta~~v~~t~~~ 587 (1281)
T KOG4222|consen 508 VEKAGSSQQFCRCEDPSALPSPPGTPGVVNVSRTSVTLSWQPTSPSGAVPASGYIIEAFSPDLGETWQTTAGRVKTTTYA 587 (1281)
T ss_pred hhhcCcccccccCCChhhCCCCCCCCccccCCCceEEecccCCCCCCccccchhHHHHhhhhhcccccccccccccceee
Confidence 432221 12345677788888888999999999999877633 67888999854 44444444344455778899
Q ss_pred eCCCCCCCeEEEEEEEEcCCCCCCCceeEEEecCCCC--CCCC-------CCCC-CC-ceeEEEecCCCeEEEEEeCCCC
Q psy241 405 ITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPP--PQAP-------KVLI-PP-MGLKSEVLSPYSMRISWIDTTL 473 (753)
Q Consensus 405 i~~L~p~~~Y~v~V~a~~~~G~~~~s~~~~~t~~~~~--p~~~-------~p~~-~p-~~l~~~~~~~~sv~v~W~~p~~ 473 (753)
|.+|+|+..|.|.|+|.|..|.+.++........... ..+. .... +- .-.....++.++|.+.|.....
T Consensus 588 I~gL~P~~sylf~vRa~n~~Gis~Ps~~S~~vrta~a~~~~a~ad~~k~~~~ls~~l~~l~~~~~L~asslr~~w~~~kq 667 (1281)
T KOG4222|consen 588 IRGLKPNLSYLFLVRAENEQGISDPSTSSDPVRTAPADAAAAGADHQKVQRELSNELLRLSNPNVLNASSLRLGWTKDKQ 667 (1281)
T ss_pred ecCcCccceeeeeeeccccccccCCcccCCccccCCCChhhhhhhHHHHHHhhcccceeeccccccchhheeeeeeeecc
Confidence 9999999999999999999998877654333322211 1000 0000 00 0111234568999999998754
Q ss_pred CcccccCCCCccEEEEEEEeecCCCCCceEE---eccccceEEecCcccCceeEEEEEEEeCCC---CCcceEEEEeeec
Q psy241 474 PDQFQQHGEEGRHYLVRYTHLLGASNPRYKY---INANITSVQINDLRPSTQYEFTVKVVRAKK---ESEWSMIVLNTTQ 547 (753)
Q Consensus 474 ~~~~~~~~~~~~~Y~v~~~~~~~~~~~~~~~---~~~~~~~~~l~~L~p~t~Y~~~V~a~~~~g---~s~~s~~~~~~t~ 547 (753)
.. -.-+.+|+|.|+.... ...++.. ......++.+.+|.|++.|+|.++.+...+ .+..+....+.|.
T Consensus 668 ~~-----~~~i~g~~I~~r~~~~-~~a~~s~~~v~~~t~~s~v~~nl~p~t~ye~f~~Pf~~~~~s~~g~pS~sk~alt~ 741 (1281)
T KOG4222|consen 668 HG-----SQYIQGYRISYRSLGS-QLAQWSNAGVTVPTPESVVVPNLKPGTNYEFFVRPFFPHGYSIQGAPSNSKTALTL 741 (1281)
T ss_pred cC-----cccccceEEEeccCcc-ccccccccceeccCCcceeccccCCCccceeeccCccCCCcceecCCccccccccc
Confidence 22 2467899999998764 3333332 345667889999999999999999987744 4566778888889
Q ss_pred CCCCCCCCcceEEeec-CCCCeeEEEEeeCCC--CCCCceeEEEEEEEeCCCCCceEEEEeeCceeEEEEcCCCCCCEEE
Q psy241 548 EAAPASAPRDLTVVSK-EGDPSLVNLNWQPPK--SANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYY 624 (753)
Q Consensus 548 ~~~p~~~P~~l~~~~~-~~~~~~v~l~W~~p~--~~~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~ 624 (753)
+.+|..+|.+++.... ..+.+...|+|.+|. ..||.+.+|.|...............++....+.+|.+|.+|..|.
T Consensus 742 e~~PSapp~~~~~~s~~~~n~Ta~~Vsw~~pp~d~~ng~~qg~ki~~~~~e~tr~h~n~t~~a~~~sv~i~~l~~g~ay~ 821 (1281)
T KOG4222|consen 742 EEPPSAPPQGVQHVSKGSYNGTAGSVSWAPPPADVQNGILQGYKIECSGGEKTRIHINKTTNARTGSVTIGNLVTGIAYS 821 (1281)
T ss_pred ccCCCCCCCCccccccccCCCceeeEEecCCcccccCCcccceeEEeecCccccccccccccCCCCceEeccccccceEE
Confidence 9999999988532222 237789999999764 5788999999998655422122223455667889999999999999
Q ss_pred EEEEEEcCCCCCCCCCceEEEcC
Q psy241 625 FKIKARNSAGSSPYSSTVTWTTA 647 (753)
Q Consensus 625 ~~V~A~~~~G~g~~S~~~~~~T~ 647 (753)
|+|.|++.+|.|+.+++..+.+.
T Consensus 822 vtv~a~T~aGvG~~s~p~~~~~~ 844 (1281)
T KOG4222|consen 822 VTVAARTGAGVGVKSPPQPIVFD 844 (1281)
T ss_pred EEEeeecCCccCCCCCCeeeecC
Confidence 99999999999999887766654
No 6
>KOG0196|consensus
Probab=99.81 E-value=2.8e-18 Score=177.15 Aligned_cols=193 Identities=27% Similarity=0.438 Sum_probs=153.4
Q ss_pred CCCCCCceeEEEecCCCeEEEEEeCCCCCcccccCCCCccEEEEEEEeecCCCCCce-------EE----eccccceEEe
Q psy241 446 KVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRY-------KY----INANITSVQI 514 (753)
Q Consensus 446 ~p~~~p~~l~~~~~~~~sv~v~W~~p~~~~~~~~~~~~~~~Y~v~~~~~~~~~~~~~-------~~----~~~~~~~~~l 514 (753)
.|+.+|.+|... ++.+++.|.|.+|.... +.....|.|.++.... ....+ .. ...+++++++
T Consensus 330 ~PPSaP~nlis~-vn~Ts~~L~W~~P~d~G-----GR~Di~y~v~Ck~c~~-~~~~C~~Cg~~V~f~P~q~gLt~~~V~v 402 (996)
T KOG0196|consen 330 RPPSAPRNLISN-VNGTSLILEWSPPADTG-----GREDITYNVICKKCGG-GRGACEPCGDNVRFTPRQRGLTETSVTV 402 (996)
T ss_pred CCCCccceeeee-cccceEEEEecCCcccC-----CCcceEEEEEeeccCC-CCCccccCCCCceECCCCCCcccceEEE
Confidence 345589998765 89999999999997654 4556788888887653 11111 11 2346678999
Q ss_pred cCcccCceeEEEEEEEeCCCC-C---cceEEEEeeecCCCCCCCCcceEEeecCCCCeeEEEEeeCCCCCCCceeEEEEE
Q psy241 515 NDLRPSTQYEFTVKVVRAKKE-S---EWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTIL 590 (753)
Q Consensus 515 ~~L~p~t~Y~~~V~a~~~~g~-s---~~s~~~~~~t~~~~p~~~P~~l~~~~~~~~~~~v~l~W~~p~~~~g~i~~Y~V~ 590 (753)
.+|.|.+.|+|.|.|+|+... + .....+.++|...+|+ +...++.... +.+++.|+|..|+.+||.|..|+|.
T Consensus 403 ~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps-~V~~~r~~~~--~~~sitlsW~~p~~png~ildYEvk 479 (996)
T KOG0196|consen 403 SDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPS-PVSVLRQVSR--TSDSITLSWSEPDQPNGVILDYEVK 479 (996)
T ss_pred eccccccccEEEEEEeecccccCCCCCcceeEEeeccccCCC-ccceEEEeee--ccCceEEecCCCCCCCCcceeEEEE
Confidence 999999999999999997532 2 3356777888777764 4445776665 8899999999999999999999999
Q ss_pred EEeCCCCCceEEEEeeCceeEEEEcCCCCCCEEEEEEEEEcCCCCCCCCCceEEEcCCC
Q psy241 591 YSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649 (753)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~T~~~ 649 (753)
|.+... ++.....+....+..+|.+|+|++.|.|+|||++.+|.|++|....|+|.+.
T Consensus 480 y~ek~~-~e~~~~~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~~ 537 (996)
T KOG0196|consen 480 YYEKDE-DERSYSTLKTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLPS 537 (996)
T ss_pred Eeeccc-cccceeEEecccceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecCc
Confidence 998865 3334456677778999999999999999999999999999999999999887
No 7
>KOG0196|consensus
Probab=99.79 E-value=1.1e-17 Score=172.93 Aligned_cols=192 Identities=28% Similarity=0.400 Sum_probs=159.6
Q ss_pred cccCCCCCCcccEEEEEcCcEEEEEEcCCCCCCC-cceEEEEEEEEcCCCCceEEeec----------c-ccceE-eeCC
Q psy241 52 ETLTLPSAPQSVSAIMVGPRSVALRWLPPTLPRG-EILVYCVLYKREGSERERAYNAT----------A-RVEAI-IQGL 118 (753)
Q Consensus 52 ~~~~~P~~P~~l~~~~~~~~si~lsW~~~~~~~~-~~~~Y~v~~~~~~~~~~~~~~~~----------~-~~~~~-i~~L 118 (753)
....+|++|+||... ++.+++.|.|.+|.+.+| .-..|.|.++..+.....+..+. . +++.+ +.+|
T Consensus 327 pCT~PPSaP~nlis~-vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~L 405 (996)
T KOG0196|consen 327 PCTRPPSAPRNLISN-VNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSDL 405 (996)
T ss_pred CCCCCCCccceeeee-cccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEecc
Confidence 467889999999987 789999999999998777 56889999998775443332111 1 56788 9999
Q ss_pred cCCCEEEEEEEEEeCCCCcc----CCCceEEEccCCCCCCCCCcceEEeeecCcEEEEEEeCCCCCCCcceEEEEEEEEc
Q psy241 119 HPNTSYTFRVVAYNALGAGL----ASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEE 194 (753)
Q Consensus 119 ~p~t~Y~~~V~a~~~~g~~~----~s~~~~~~t~~~~~~P~~p~~l~~~~~~~~sv~lsW~~p~~~~~~~~~Y~v~~~~~ 194 (753)
.|.+.|+|.|.|+|+...-. ....+.++|... .|++...++....+.+++.|+|..|...++.+..|+|.|.+.
T Consensus 406 ~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa--~ps~V~~~r~~~~~~~sitlsW~~p~~png~ildYEvky~ek 483 (996)
T KOG0196|consen 406 LAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQA--APSPVSVLRQVSRTSDSITLSWSEPDQPNGVILDYEVKYYEK 483 (996)
T ss_pred ccccccEEEEEEeecccccCCCCCcceeEEeecccc--CCCccceEEEeeeccCceEEecCCCCCCCCcceeEEEEEeec
Confidence 99999999999998764222 233456777665 788889999999999999999999999999999999999988
Q ss_pred CCc--ceEEEeecccEEEEcCCCCCcEEEEEEEEEeCCCCCCCCceeEEEecCC
Q psy241 195 DTS--VERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSD 246 (753)
Q Consensus 195 ~~~--~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~~~~s~~~~~~t~~~ 246 (753)
+.. ....+....+..++.+|+|++.|.|+|+|....|.|..|....+.|.+.
T Consensus 484 ~~~e~~~~~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~~ 537 (996)
T KOG0196|consen 484 DEDERSYSTLKTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLPS 537 (996)
T ss_pred cccccceeEEecccceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecCc
Confidence 643 3356677788999999999999999999999999999999999999876
No 8
>KOG4222|consensus
Probab=99.71 E-value=3.2e-16 Score=167.96 Aligned_cols=317 Identities=19% Similarity=0.298 Sum_probs=232.5
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCCCCccCCCceEEEcc----------CCCCCCCCCcceEEeeecCcEEEEEEeCCCC-
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNALGAGLASSALPVKTE----------PEDHVPSPPLNVNIPVVGTSSLLVTWEKPTV- 179 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~g~~~~s~~~~~~t~----------~~~~~P~~p~~l~~~~~~~~sv~lsW~~p~~- 179 (753)
-.. +.+|.-...|.|+|.|.+..|.+.|+..+.+.-. .....|++|..-.+..++.+++.|+|.+...
T Consensus 474 ~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~s 553 (1281)
T KOG4222|consen 474 GSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDPSALPSPPGTPGVVNVSRTSVTLSWQPTSPS 553 (1281)
T ss_pred ceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCcccccccCCChhhCCCCCCCCccccCCCceEEecccCCCCC
Confidence 344 7888888899999999999999999887765311 1124677777778888899999999999774
Q ss_pred CCCcceEEEEEEEEcCCc-ceEEE--eecccEEEEcCCCCCcEEEEEEEEEeCCCCCCCCce-eEEEecCCCCCCCCCC-
Q psy241 180 TNGEIKHYTLYYLEEDTS-VERHV--VTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQE-LSVQTLSDKPSEPPAN- 254 (753)
Q Consensus 180 ~~~~~~~Y~v~~~~~~~~-~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~~~~s~~-~~~~t~~~~p~~~~~~- 254 (753)
...++.+|.+++...+.. .|+.. ....+.+.|.+|+|++.|.|.|+|.|..|.+.++.. -.++|.+..+.....+
T Consensus 554 g~vP~s~yiieafs~~~~etw~~ta~~v~~t~~~I~gL~P~~sylf~vRa~n~~Gis~Ps~~S~~vrta~a~~~~a~ad~ 633 (1281)
T KOG4222|consen 554 GAVPASGYIIEAFSPDLGETWQTTAGRVKTTTYAIRGLKPNLSYLFLVRAENEQGISDPSTSSDPVRTAPADAAAAGADH 633 (1281)
T ss_pred CccccchhHHHHhhhhhcccccccccccccceeeecCcCccceeeeeeeccccccccCCcccCCccccCCCChhhhhhhH
Confidence 345888999998765543 34333 345788999999999999999999999998777643 3445554433322221
Q ss_pred -----------------------cEEEEEeCCCCCCCCceeeEEEEEEEEcCccCCCCcEEE-ecCceeEEEEcCCCCCC
Q psy241 255 -----------------------SITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVT-TAGDRRLYVITGLNKST 310 (753)
Q Consensus 255 -----------------------si~l~W~~p~~~~~~~~~~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t 310 (753)
++.+.|..... .....+.+|+|.|+........+.... .......+.+.+|.|++
T Consensus 634 ~k~~~~ls~~l~~l~~~~~L~asslr~~w~~~kq-~~~~~i~g~~I~~r~~~~~~a~~s~~~v~~~t~~s~v~~nl~p~t 712 (1281)
T KOG4222|consen 634 QKVQRELSNELLRLSNPNVLNASSLRLGWTKDKQ-HGSQYIQGYRISYRSLGSQLAQWSNAGVTVPTPESVVVPNLKPGT 712 (1281)
T ss_pred HHHHHhhcccceeeccccccchhheeeeeeeecc-cCcccccceEEEeccCccccccccccceeccCCcceeccccCCCc
Confidence 89999988762 345789999999998875322233222 34456788999999999
Q ss_pred eEEEEEEEEeCCC---CCCCCcceeeeeeeccCCCcccCCC-Ccc---eeeecCCCCeEEEEEeCCCCC--CcceeEEEE
Q psy241 311 TYQIKLWAMNVNG---SGPATDWFSAETFSQDLGEFTVPDI-PAS---LKARPGGPSSIIVSWTPPADQ--SIMVRGFTL 381 (753)
Q Consensus 311 ~Y~i~V~a~~~~g---~~~~s~~~~~~t~~~~~~~~~~p~~-p~~---~~~~~~~~~~v~l~W~~~~~~--~~~i~~Y~v 381 (753)
.|.|.++.+...| .|..+....+.|.+ .+|.+ |.. +++-....+++.|+|.++... ++.+.+|.|
T Consensus 713 ~ye~f~~Pf~~~~~s~~g~pS~sk~alt~e------~~PSapp~~~~~~s~~~~n~Ta~~Vsw~~pp~d~~ng~~qg~ki 786 (1281)
T KOG4222|consen 713 NYEFFVRPFFPHGYSIQGAPSNSKTALTLE------EPPSAPPQGVQHVSKGSYNGTAGSVSWAPPPADVQNGILQGYKI 786 (1281)
T ss_pred cceeeccCccCCCcceecCCcccccccccc------cCCCCCCCCccccccccCCCceeeEEecCCcccccCCcccceeE
Confidence 9999999998744 35667777777766 45544 445 344455568899999987543 388999999
Q ss_pred EEeeCCCCcc-EEEEecCcccEEEeCCCCCCCeEEEEEEEEcCCCCCCCceeEEE
Q psy241 382 GWGKGVPDEF-VKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESLR 435 (753)
Q Consensus 382 ~~~~~~~~~~-~~~~~~~~~~~~~i~~L~p~~~Y~v~V~a~~~~G~~~~s~~~~~ 435 (753)
.......... ....++....+.+|.+|.++..|.|+|.+.+.+|.|..+.....
T Consensus 787 ~~~~~e~tr~h~n~t~~a~~~sv~i~~l~~g~ay~vtv~a~T~aGvG~~s~p~~~ 841 (1281)
T KOG4222|consen 787 ECSGGEKTRIHINKTTNARTGSVTIGNLVTGIAYSVTVAARTGAGVGVKSPPQPI 841 (1281)
T ss_pred EeecCccccccccccccCCCCceEeccccccceEEEEEeeecCCccCCCCCCeee
Confidence 8766553222 23556677889999999999999999999999999886654433
No 9
>KOG4258|consensus
Probab=99.61 E-value=1e-14 Score=151.70 Aligned_cols=363 Identities=17% Similarity=0.254 Sum_probs=199.8
Q ss_pred cEEEEEeCCCCCCCCceeeEEEEEEEEcCc------------cCCCCcEEEecCc--------eeEEEEcCCCCCCeEEE
Q psy241 255 SITVRWQPPSRRGQNGIITGYKLRYKKKDV------------KKDKGETVTTAGD--------RRLYVITGLNKSTTYQI 314 (753)
Q Consensus 255 si~l~W~~p~~~~~~~~~~~Y~v~~~~~~~------------~~~~~~~~~~~~~--------~~~~~i~~L~p~t~Y~i 314 (753)
++.++|..-... ..-...+|.++|..... ....|....+... ...+.+.+|+|.|.|.+
T Consensus 503 si~lrW~~~~~~-d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~~l~~LkP~TqYAv 581 (1025)
T KOG4258|consen 503 SILLRWERYQPP-DMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGFLLDGLKPWTQYAV 581 (1025)
T ss_pred eeEEEecccCCc-chhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccceehhcCCccceeEE
Confidence 999999765432 22346788888865321 1222333332222 22578899999999999
Q ss_pred EEEEEeCC--CC--CCCCcceeeeeeeccCCCcccCCCCcceeeecCCCCeEEEEEeCCCCCCcceeEEEEEEeeCCCCc
Q psy241 315 KLWAMNVN--GS--GPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDE 390 (753)
Q Consensus 315 ~V~a~~~~--g~--~~~s~~~~~~t~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~~~~~~~~i~~Y~v~~~~~~~~~ 390 (753)
.|++.... +. -..|+...+.|.. ..|.+|..+-....++..|.|+|++|..+||.++.|.|.|.....+.
T Consensus 582 fVkT~t~t~~~~~~~A~S~I~YvqT~~------~~PspPl~~ls~snsSsqi~l~W~pP~~pNG~lt~Ylv~wer~~~~~ 655 (1025)
T KOG4258|consen 582 FVKTLTVTEAHEAYEAKSKIGYVQTLP------DIPSPPLDVLSKSNSSSQILLKWKPPSQPNGNLTHYLVVWERQAEDG 655 (1025)
T ss_pred EEeeeehhhhccccccccceEEEEecC------CCCCCcchhhhccCcchheeEEecCCCCCCCceeEEEEEEEeccCCc
Confidence 99998532 22 2456777788866 78999988777777778999999999999999999999998765443
Q ss_pred cE---EEEecC-------cccEEEeCCCCCCCeEEEEEEEEcCCCCCCCceeEEEecCCCCCCCCCCCCCCceeEEEecC
Q psy241 391 FV---KQILDV-------KQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLS 460 (753)
Q Consensus 391 ~~---~~~~~~-------~~~~~~i~~L~p~~~Y~v~V~a~~~~G~~~~s~~~~~t~~~~~p~~~~p~~~p~~l~~~~~~ 460 (753)
.. .....+ ....+...+..|-.++. .....+.+.+........... + +-.....++.-
T Consensus 656 yl~~~nYC~~~~k~p~~~~~p~~~~ed~d~~~e~e----~~~~~Cc~c~~~~~~~~~e~e--e------a~~~~~FEd~L 723 (1025)
T KOG4258|consen 656 YLEQRNYCHKGLKLPIRADLPSFDSEDMDPLLEME----GHTGPCCSCPPTESYPQYEDE--E------ASEQKTFEDFL 723 (1025)
T ss_pred hHHHhccccccccccccccCCCCchhhcchhhhhc----cCCCCCCCCCcccccCchhhH--H------HHHHHHHhhhc
Confidence 22 010110 00011111111110110 000000110000000000000 0 00000000011
Q ss_pred CCeEEEE----EeCCCCCccc-------------ccCCCCccEEEEEEEeecCCCCCceEEeccccceEEecCcccCcee
Q psy241 461 PYSMRIS----WIDTTLPDQF-------------QQHGEEGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQY 523 (753)
Q Consensus 461 ~~sv~v~----W~~p~~~~~~-------------~~~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y 523 (753)
.+.+.+. |..-+....- ......-.-|.++-. ....-+.+..++.+.+|++.|.|
T Consensus 724 ~n~i~vpr~~~~krk~l~~~~n~t~~~~~~~~~~p~t~~~t~p~ei~e~--------~p~~~n~n~~~~vi~~Lrh~tlY 795 (1025)
T KOG4258|consen 724 HNAIFVPRRPDRKRKSLDDVENCTRLAPTRKAEEPTTPPTTAPTEIEEP--------KPRLENGNKESYVISGLRHFTLY 795 (1025)
T ss_pred cceeeecccCcccccccccccceeeccccccccCCCCCCCCCCcccccc--------Ccccccccchhhhhhccccchhh
Confidence 1122222 1111100000 000000011222111 11111367778999999999999
Q ss_pred EEEEEEEeCCCC----CcceEEEEeeecCCCCC-CCCcceEEeecCCCCeeEEEEeeCCCCCCCceeEEEEEEEeCCCCC
Q psy241 524 EFTVKVVRAKKE----SEWSMIVLNTTQEAAPA-SAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTD 598 (753)
Q Consensus 524 ~~~V~a~~~~g~----s~~s~~~~~~t~~~~p~-~~P~~l~~~~~~~~~~~v~l~W~~p~~~~g~i~~Y~V~~~~~~~~~ 598 (753)
.+.++|++..+. |. ...+..+|...... ..|..+..... .+.+.+.|+|.+|..+||-|..|+|.|+......
T Consensus 796 ~i~l~aCnh~~~~~~cS~-a~~v~~RT~~~~~aD~i~g~v~we~~-~~~~~v~l~w~EP~~pNGli~~Y~Vk~r~~~~et 873 (1025)
T KOG4258|consen 796 RIDLQACNHATPKCGCSH-AAFVFARTMPTMGADDIPGPVTWECH-IEMNSVILRWLEPKEPNGLILNYEVKYRRNGDET 873 (1025)
T ss_pred hhhHhhhcccccccccch-hhhhhhccccccccccCCCceeEecc-cCcceEEEecCCCCCCCccEEEEEEEEeeccCcc
Confidence 999999987664 33 33334444432222 22332333222 2778999999999999999999999999765431
Q ss_pred ceE--EEEeeCceeEEEEcCCCCCCEEEEEEEEEcCCCCCCCCCceEEEcC
Q psy241 599 QWI--EESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTA 647 (753)
Q Consensus 599 ~~~--~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~T~ 647 (753)
... ..........+.+.+|.+| .|.++|||...+|.|+|.+++.|-..
T Consensus 874 ~v~cvsR~~~~k~~gv~l~~l~~G-~y~~~vratSlaGng~~t~~~~~~v~ 923 (1025)
T KOG4258|consen 874 HVECVSRMDYAKAGGVYLKRLNPG-NYSVRVRATSLAGNGSWTESVIFYVS 923 (1025)
T ss_pred hhhhhhhhhhhhcCceEEEecCCC-cEEEEEEEEeeccCCCCcCCcceEEe
Confidence 111 0111233456889999998 59999999999999999877655543
No 10
>KOG4258|consensus
Probab=99.55 E-value=1.6e-13 Score=142.99 Aligned_cols=357 Identities=20% Similarity=0.301 Sum_probs=205.9
Q ss_pred cccEEEEEcCcEEEEEEcCCCCC-CCcceEEEEEEEEc--------------CCCCceEEeeccc--------cceE-ee
Q psy241 61 QSVSAIMVGPRSVALRWLPPTLP-RGEILVYCVLYKRE--------------GSERERAYNATAR--------VEAI-IQ 116 (753)
Q Consensus 61 ~~l~~~~~~~~si~lsW~~~~~~-~~~~~~Y~v~~~~~--------------~~~~~~~~~~~~~--------~~~~-i~ 116 (753)
.++.....+.+++.|+|..-... ..+..+|.++|++. +...|........ ..-+ +.
T Consensus 492 l~~~~~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~~l~ 571 (1025)
T KOG4258|consen 492 LQFSSTVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGFLLD 571 (1025)
T ss_pred eeeeeEEeecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccceehh
Confidence 34566667789999999875532 22578999999854 3344544433321 1245 99
Q ss_pred CCcCCCEEEEEEEEEeC--CC--CccCCCceEEEccCCCCCCCCCcceEEeeecCcEEEEEEeCCCCCCCcceEEEEEEE
Q psy241 117 GLHPNTSYTFRVVAYNA--LG--AGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYL 192 (753)
Q Consensus 117 ~L~p~t~Y~~~V~a~~~--~g--~~~~s~~~~~~t~~~~~~P~~p~~l~~~~~~~~sv~lsW~~p~~~~~~~~~Y~v~~~ 192 (753)
+|+|+|.|.|.|.+... .+ .-..|....++|.+. .|++|..+-....++..|.|+|.+|...||.+.+|.|.|+
T Consensus 572 ~LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~--~PspPl~~ls~snsSsqi~l~W~pP~~pNG~lt~Ylv~we 649 (1025)
T KOG4258|consen 572 GLKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPD--IPSPPLDVLSKSNSSSQILLKWKPPSQPNGNLTHYLVVWE 649 (1025)
T ss_pred cCCccceeEEEEeeeehhhhccccccccceEEEEecCC--CCCCcchhhhccCcchheeEEecCCCCCCCceeEEEEEEE
Confidence 99999999999999832 22 124567778999886 8899988877777788999999999999999999999998
Q ss_pred EcCCcceE---EEeecc---------cEEEEcCCCCCcEEEEEEEEEeCCCCCCCCceeEEEecCCCCCC--------CC
Q psy241 193 EEDTSVER---HVVTPQ---------LSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSE--------PP 252 (753)
Q Consensus 193 ~~~~~~~~---~~~~~~---------~~~~i~~L~p~t~Y~~~V~a~n~~g~~~~s~~~~~~t~~~~p~~--------~~ 252 (753)
........ .+-... ..+..++..|-.++. ...|....-...........-.+ ..
T Consensus 650 r~~~~~yl~~~nYC~~~~k~p~~~~~p~~~~ed~d~~~e~e------~~~~~Cc~c~~~~~~~~~e~eea~~~~~FEd~L 723 (1025)
T KOG4258|consen 650 RQAEDGYLEQRNYCHKGLKLPIRADLPSFDSEDMDPLLEME------GHTGPCCSCPPTESYPQYEDEEASEQKTFEDFL 723 (1025)
T ss_pred eccCCchHHHhccccccccccccccCCCCchhhcchhhhhc------cCCCCCCCCCcccccCchhhHHHHHHHHHhhhc
Confidence 77654321 110000 011111111111111 00000000000000000000000 00
Q ss_pred CCcEEEE----EeCCCCCCCCceeeEEEEEEEE-cCc-----c------CCCCcEEEecCceeEEEEcCCCCCCeEEEEE
Q psy241 253 ANSITVR----WQPPSRRGQNGIITGYKLRYKK-KDV-----K------KDKGETVTTAGDRRLYVITGLNKSTTYQIKL 316 (753)
Q Consensus 253 ~~si~l~----W~~p~~~~~~~~~~~Y~v~~~~-~~~-----~------~~~~~~~~~~~~~~~~~i~~L~p~t~Y~i~V 316 (753)
.+.+.+. |..-+ -.+...+..-... ... . -.......-..+..++.|.+|...+.|.+.+
T Consensus 724 ~n~i~vpr~~~~krk~----l~~~~n~t~~~~~~~~~~p~t~~~t~p~ei~e~~p~~~n~n~~~~vi~~Lrh~tlY~i~l 799 (1025)
T KOG4258|consen 724 HNAIFVPRRPDRKRKS----LDDVENCTRLAPTRKAEEPTTPPTTAPTEIEEPKPRLENGNKESYVISGLRHFTLYRIDL 799 (1025)
T ss_pred cceeeecccCcccccc----cccccceeeccccccccCCCCCCCCCCccccccCcccccccchhhhhhccccchhhhhhH
Confidence 0033333 22111 0011112111111 000 0 0000000012566789999999999999999
Q ss_pred EEEeCCCC----CCCCcceeeeeeeccCCCcccCCCCcceeeecC-CCCeEEEEEeCCCCCCcceeEEEEEEeeCCCCcc
Q psy241 317 WAMNVNGS----GPATDWFSAETFSQDLGEFTVPDIPASLKARPG-GPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEF 391 (753)
Q Consensus 317 ~a~~~~g~----~~~s~~~~~~t~~~~~~~~~~p~~p~~~~~~~~-~~~~v~l~W~~~~~~~~~i~~Y~v~~~~~~~~~~ 391 (753)
.|++..+. +..+ .+...|.. ..+++.+|+ .+..... ..+++.|+|.+|..+||.+..|.|.|........
T Consensus 800 ~aCnh~~~~~~cS~a~-~v~~RT~~-~~~aD~i~g---~v~we~~~~~~~v~l~w~EP~~pNGli~~Y~Vk~r~~~~et~ 874 (1025)
T KOG4258|consen 800 QACNHATPKCGCSHAA-FVFARTMP-TMGADDIPG---PVTWECHIEMNSVILRWLEPKEPNGLILNYEVKYRRNGDETH 874 (1025)
T ss_pred hhhcccccccccchhh-hhhhcccc-ccccccCCC---ceeEecccCcceEEEecCCCCCCCccEEEEEEEEeeccCcch
Confidence 99987665 2222 22223322 122333444 3444433 6689999999999999999999999997655443
Q ss_pred EE---EEecCcccEEEeCCCCCCCeEEEEEEEEcCCCCCCCceeEEE
Q psy241 392 VK---QILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESLR 435 (753)
Q Consensus 392 ~~---~~~~~~~~~~~i~~L~p~~~Y~v~V~a~~~~G~~~~s~~~~~ 435 (753)
.. ..--.....+.+.+|.+| .|.++|+|..-+|.|++.....+
T Consensus 875 v~cvsR~~~~k~~gv~l~~l~~G-~y~~~vratSlaGng~~t~~~~~ 920 (1025)
T KOG4258|consen 875 VECVSRMDYAKAGGVYLKRLNPG-NYSVRVRATSLAGNGSWTESVIF 920 (1025)
T ss_pred hhhhhhhhhhhcCceEEEecCCC-cEEEEEEEEeeccCCCCcCCcce
Confidence 31 011233446788899888 89999999999999988764443
No 11
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=99.33 E-value=8.4e-12 Score=99.70 Aligned_cols=84 Identities=42% Similarity=0.812 Sum_probs=74.6
Q ss_pred CCcceEEeecCCCCeeEEEEeeCCCCCCCceeEEEEEEEeCCCCCceEEEEeeCceeEEEEcCCCCCCEEEEEEEEEcCC
Q psy241 554 APRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSA 633 (753)
Q Consensus 554 ~P~~l~~~~~~~~~~~v~l~W~~p~~~~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~ 633 (753)
+|.+|++... +.+++.|+|..+...++.+.+|.|+|+..++...+....+......++|.+|+|++.|.|+|+|.+..
T Consensus 2 ~P~~l~v~~~--~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~~ 79 (85)
T PF00041_consen 2 APENLSVSNI--SPTSVTVSWKPPSSGNGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITGLQPGTTYEFRVRAVNSD 79 (85)
T ss_dssp SSEEEEEEEE--CSSEEEEEEEESSSTSSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEESCCTTSEEEEEEEEEETT
T ss_pred cCcCeEEEEC--CCCEEEEEEECCCCCCCCeeEEEEEEEecccceeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEeCC
Confidence 6889999988 89999999999877788999999999988775557777788888899999999999999999999999
Q ss_pred CCCCCC
Q psy241 634 GSSPYS 639 (753)
Q Consensus 634 G~g~~S 639 (753)
|.|++|
T Consensus 80 g~g~~S 85 (85)
T PF00041_consen 80 GEGPPS 85 (85)
T ss_dssp EEEEEE
T ss_pred cCcCCC
Confidence 988764
No 12
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=99.18 E-value=1.6e-10 Score=92.28 Aligned_cols=83 Identities=36% Similarity=0.569 Sum_probs=70.4
Q ss_pred CCCcccEEEEEcCcEEEEEEcCCCCCCCcceEEEEEEEEcCCCC-ceEEeeccccceE-eeCCcCCCEEEEEEEEEeCCC
Q psy241 58 SAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSER-ERAYNATARVEAI-IQGLHPNTSYTFRVVAYNALG 135 (753)
Q Consensus 58 ~~P~~l~~~~~~~~si~lsW~~~~~~~~~~~~Y~v~~~~~~~~~-~~~~~~~~~~~~~-i~~L~p~t~Y~~~V~a~~~~g 135 (753)
++|.+|++..++.+++.|+|.++...++.+..|.|+|+..+... +...........+ +.+|.|++.|.|+|+|.+..|
T Consensus 1 s~P~~l~v~~~~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~~g 80 (85)
T PF00041_consen 1 SAPENLSVSNISPTSVTVSWKPPSSGNGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITGLQPGTTYEFRVRAVNSDG 80 (85)
T ss_dssp SSSEEEEEEEECSSEEEEEEEESSSTSSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEESCCTTSEEEEEEEEEETTE
T ss_pred CcCcCeEEEECCCCEEEEEEECCCCCCCCeeEEEEEEEecccceeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEeCCc
Confidence 47899999999999999999999766778999999999887776 4444444455678 999999999999999999999
Q ss_pred CccCC
Q psy241 136 AGLAS 140 (753)
Q Consensus 136 ~~~~s 140 (753)
.|.+|
T Consensus 81 ~g~~S 85 (85)
T PF00041_consen 81 EGPPS 85 (85)
T ss_dssp EEEEE
T ss_pred CcCCC
Confidence 77653
No 13
>KOG4802|consensus
Probab=98.73 E-value=8.7e-07 Score=85.61 Aligned_cols=174 Identities=21% Similarity=0.262 Sum_probs=110.9
Q ss_pred CCCCCcccEE-EEEcCcEEEEEEcCCCCCCCcceEEEEEE------------EEcCCCCceEEeeccccceE-eeCCcCC
Q psy241 56 LPSAPQSVSA-IMVGPRSVALRWLPPTLPRGEILVYCVLY------------KREGSERERAYNATARVEAI-IQGLHPN 121 (753)
Q Consensus 56 ~P~~P~~l~~-~~~~~~si~lsW~~~~~~~~~~~~Y~v~~------------~~~~~~~~~~~~~~~~~~~~-i~~L~p~ 121 (753)
.+.+|++..+ .....+++.+.|..-.. ..-|.+.+ ++.+...|+.+........+ ..++.||
T Consensus 144 ~~l~Pr~k~~y~r~~~g~~av~w~~~~~----~~v~~~~~~vr~~w~~g~hase~~~thwQtv~~t~~e~~~~~t~~rPg 219 (516)
T KOG4802|consen 144 TQLPPRPKILYFRRSRGSHAVDWKIESS----LLVYYVHVEVRSHWGRGFHASELGPTHWQTVEKTMEENTYIFTDMRPG 219 (516)
T ss_pred CCCCCcchhhhhhhccCceeeeeeeccc----cceeeeehhhhhhhcccccccccccccceeeeecCCCceeeeeecCcc
Confidence 4556666444 44456779999986432 12222222 22233345555555455577 9999999
Q ss_pred CEEEEEEEEEeCCCCccCCCce-EEEccCCCCCCCCCcceEEeee---cCcEEEEEEeCCCCCCCcceEEEEEEEEcCCc
Q psy241 122 TSYTFRVVAYNALGAGLASSAL-PVKTEPEDHVPSPPLNVNIPVV---GTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTS 197 (753)
Q Consensus 122 t~Y~~~V~a~~~~g~~~~s~~~-~~~t~~~~~~P~~p~~l~~~~~---~~~sv~lsW~~p~~~~~~~~~Y~v~~~~~~~~ 197 (753)
.-|.|+|.|+|..|.-..+.+. .+.....+..|.+|.++++..+ +.-...|-|.|+. .+-++.+|+|.|...-..
T Consensus 220 Rwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~~~v~w~P~~-sdlPv~~Yki~Ws~~v~s 298 (516)
T KOG4802|consen 220 RWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYMLKVVWCPSK-SDLPVEKYKITWSLYVNS 298 (516)
T ss_pred eeEEEEEeeeecccccccCCCCCCCCCCCCCCCCcCcccceeeeeeecceEEEEEEeCCCC-CCCcceeeEEEeehhhhh
Confidence 9999999999988754444333 2333333346778889887643 2235667777765 566899999999765532
Q ss_pred ce------EEEeecccEEEEcCCCCCcEEEEEEEEEeCCCCCC
Q psy241 198 VE------RHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGT 234 (753)
Q Consensus 198 ~~------~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~~~ 234 (753)
.. .........+.|++|.|+..|.+.|.|....|.+.
T Consensus 299 ~k~~m~tks~~~k~thq~si~~L~Pns~Y~VevqAi~y~g~~r 341 (516)
T KOG4802|consen 299 AKASMITKSSYVKDTHQFSIKELLPNSSYYVEVQAISYLGSRR 341 (516)
T ss_pred hhhhcccccceeeccchhhhhhcCCCCeEEEEEEEEEeccCcc
Confidence 11 11111222344999999999999999998777654
No 14
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=98.71 E-value=2.1e-07 Score=75.33 Aligned_cols=89 Identities=37% Similarity=0.713 Sum_probs=68.7
Q ss_pred CCcceEEeecCCCCeeEEEEeeCCCCCCCceeEEEEEEEeCCCCCceEEEEee-CceeEEEEcCCCCCCEEEEEEEEEcC
Q psy241 554 APRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVV-GDKMSTNVRGLEPGRIYYFKIKARNS 632 (753)
Q Consensus 554 ~P~~l~~~~~~~~~~~v~l~W~~p~~~~g~i~~Y~V~~~~~~~~~~~~~~~~~-~~~~~~~l~~L~p~t~Y~~~V~A~~~ 632 (753)
+|.++.+... ...++.|+|.++...++.+..|.|++..... ..|...... .....+.+.+|.|++.|.|+|+|.+.
T Consensus 3 ~p~~~~~~~~--~~~~~~v~W~~~~~~~~~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~~ 79 (93)
T cd00063 3 PPTNLRVTDV--TSTSVTLSWTPPEDDGGPITGYVVEYREKGS-GDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNG 79 (93)
T ss_pred CCCCcEEEEe--cCCEEEEEECCCCCCCCcceeEEEEEeeCCC-CCCEEeeccCCcccEEEEccccCCCEEEEEEEEECC
Confidence 5666777765 6799999999987655778899999987652 334433332 36678999999999999999999998
Q ss_pred CCCCCCCCceEEE
Q psy241 633 AGSSPYSSTVTWT 645 (753)
Q Consensus 633 ~G~g~~S~~~~~~ 645 (753)
.|.|.++....+.
T Consensus 80 ~~~~~~s~~~~~~ 92 (93)
T cd00063 80 GGESPPSESVTVT 92 (93)
T ss_pred CccCCCccccccc
Confidence 8888887755554
No 15
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=98.68 E-value=4.1e-05 Score=73.73 Aligned_cols=241 Identities=14% Similarity=0.210 Sum_probs=127.1
Q ss_pred EEecCcccEEEeCCCCCCCeEEEEEEEEcCCCCCCCcee--EEEecCCCCCCCCCCCCCCceeEEEecC-CC-eEEEEEe
Q psy241 394 QILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYE--SLRTRNEPPPQAPKVLIPPMGLKSEVLS-PY-SMRISWI 469 (753)
Q Consensus 394 ~~~~~~~~~~~i~~L~p~~~Y~v~V~a~~~~G~~~~s~~--~~~t~~~~~p~~~~p~~~p~~l~~~~~~-~~-sv~v~W~ 469 (753)
+..-+..+.++|.+|.|++.|.|.|+++|..-....... ...+..... ..+..+. -..+...... .. .-.++..
T Consensus 8 ~vCvg~~t~~t~~~L~p~t~YyfdVF~vn~~~n~ssay~gt~~~t~~~~r-~~~~~Lk-dg~l~~~~l~~~~g~~~f~f~ 85 (300)
T PF10179_consen 8 IVCVGQKTNQTLSGLKPDTTYYFDVFVVNQLTNNSSAYLGTFARTREENR-SKPTRLK-DGKLTQVKLKGKGGFKFFSFK 85 (300)
T ss_pred EEEcCCCceEEeccCCCCCeEEEEEEEEECCCCceeeeeEEEEEEccccC-CCcEEcc-cCcEEEEEECCcCceeEEEEc
Confidence 445677889999999999999999999998543333222 222211111 1011110 1112221221 22 2334455
Q ss_pred CCCCCcccccCCCCccEEEEEEEeecCC--------CCCceEE-eccccceEEecCcccCceeEEEEEEEeCCCCCcceE
Q psy241 470 DTTLPDQFQQHGEEGRHYLVRYTHLLGA--------SNPRYKY-INANITSVQINDLRPSTQYEFTVKVVRAKKESEWSM 540 (753)
Q Consensus 470 ~p~~~~~~~~~~~~~~~Y~v~~~~~~~~--------~~~~~~~-~~~~~~~~~l~~L~p~t~Y~~~V~a~~~~g~s~~s~ 540 (753)
.|.... ....-.+.....++. +...... .-..-..+.+.|+.||..|.+++.+.+... .....
T Consensus 86 vP~~~~-------~~~~~~l~v~~C~G~V~v~i~r~gk~l~~~~~v~~~~~f~l~~~~~g~~Yliri~~~~~~e-~~~~~ 157 (300)
T PF10179_consen 86 VPKRSS-------THQSLWLFVQSCSGSVRVEISRNGKILLSQKNVEGLRHFRLSGVKPGERYLIRIQISNSDE-GPSTF 157 (300)
T ss_pred CCcCCC-------CCccEEEEEEeCCCeEEEEEEECCeEEeeeecccceEEEEECCCCCCCeEEEEEEccCCCC-CceEE
Confidence 331000 001111112222110 1111111 112345788999999999999998776443 33334
Q ss_pred EEE-eeecCCC--CCCCCcceEEeecC--CCCeeEEEEeeCCCCCCCceeEEEEEEEeCCCC------------------
Q psy241 541 IVL-NTTQEAA--PASAPRDLTVVSKE--GDPSLVNLNWQPPKSANGQISGYTILYSSDPNT------------------ 597 (753)
Q Consensus 541 ~~~-~~t~~~~--p~~~P~~l~~~~~~--~~~~~v~l~W~~p~~~~g~i~~Y~V~~~~~~~~------------------ 597 (753)
.+. .++.+.. =|.-|.+..+...+ .+.++++|.|.+..+.. ..|-|+.+.....
T Consensus 158 kV~aast~~~~~~~P~LP~d~~Ik~f~~lrtC~SvTIAW~~s~d~~---~kYCvy~~~~~~~~~~~~~~~~~n~C~~~~s 234 (300)
T PF10179_consen 158 KVQAASTNPSKQPYPQLPDDTSIKEFNKLRTCNSVTIAWLGSPDRS---IKYCVYRREEHSNYQERSVSRMPNQCLGPES 234 (300)
T ss_pred EEEEecCCcccCCCCCCCCCCceeEEcCCcccceEEEEEecCCCCC---ceEEEEEEEecCchhhhhhcccCccCCCCCc
Confidence 444 3443322 23556777776554 57899999999865532 4687777643322
Q ss_pred ---CceEEE-E-e--------eCceeEEEEcCCCCCCEEEEEEEEEcCCCCCCCCCceEEEcC
Q psy241 598 ---DQWIEE-S-V--------VGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTA 647 (753)
Q Consensus 598 ---~~~~~~-~-~--------~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~T~ 647 (753)
.++..- . - .......+|.||+||+.|-|.|.+.-..|..-.=....++|.
T Consensus 235 r~k~e~v~Ck~~~~~n~~~~~~~~v~tetI~~L~PG~~Yl~dV~~~~~~G~sl~Y~s~~VkTr 297 (300)
T PF10179_consen 235 RKKSEKVLCKYFHSPNSSEDPQRAVTTETIKGLKPGTTYLFDVYVNGPSGQSLPYRSKWVKTR 297 (300)
T ss_pred cccceEEEEEEEcCCccccccccccceeecccCCCCcEEEEEEEEecCCCceeecceEEEEec
Confidence 011110 0 0 111234589999999999999999876666433344555553
No 16
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=98.58 E-value=7.6e-07 Score=71.91 Aligned_cols=86 Identities=34% Similarity=0.542 Sum_probs=67.8
Q ss_pred CCCCcceEEeeecCcEEEEEEeCCCCCCCcceEEEEEEEEcCCcceEEEee---cccEEEEcCCCCCcEEEEEEEEEeCC
Q psy241 154 PSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVT---PQLSYELTGLSHFTLYSIWVVAHNGN 230 (753)
Q Consensus 154 P~~p~~l~~~~~~~~sv~lsW~~p~~~~~~~~~Y~v~~~~~~~~~~~~~~~---~~~~~~i~~L~p~t~Y~~~V~a~n~~ 230 (753)
|.+|.++++......++.|+|+++...++.+..|.|.+.......+..+.. ....+.+.+|.|++.|.|+|+|.+..
T Consensus 1 p~~p~~~~~~~~~~~~~~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~~~ 80 (93)
T cd00063 1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGG 80 (93)
T ss_pred CcCCCCcEEEEecCCEEEEEECCCCCCCCcceeEEEEEeeCCCCCCEEeeccCCcccEEEEccccCCCEEEEEEEEECCC
Confidence 346777888888889999999998755467889999998875444444443 67789999999999999999999988
Q ss_pred CCCCCCcee
Q psy241 231 GAGTTSQEL 239 (753)
Q Consensus 231 g~~~~s~~~ 239 (753)
|.+.++...
T Consensus 81 ~~~~~s~~~ 89 (93)
T cd00063 81 GESPPSESV 89 (93)
T ss_pred ccCCCcccc
Confidence 877666533
No 17
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=98.58 E-value=2e-05 Score=75.33 Aligned_cols=324 Identities=15% Similarity=0.091 Sum_probs=184.3
Q ss_pred eeeEEEEEEEEcCccCCCCcEEEecCceeEEEEcCCCCCCeEEEEEEEEeCCCCCCCCcceeeeeeeccCCCcccCCCCc
Q psy241 271 IITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPA 350 (753)
Q Consensus 271 ~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~i~V~a~~~~g~~~~s~~~~~~t~~~~~~~~~~p~~p~ 350 (753)
.+.+|.+.....+.. ...........++++...+|.++..|.+..-..+....+..++...+.|... ...+..+
T Consensus 4 ~~~~~~~~~t~~~~~-~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~i----~~~~~~~- 77 (343)
T COG3401 4 DIDGFVLYRTKKDLK-LKRIGTIKNKYQTHYYDEGLEGEESYPYQEGTTKVDKISYDSERILVKTSFI----ERVRSVF- 77 (343)
T ss_pred cceeEEEEEEcccch-hhhhhccccchhhhhhhccccccCcceeeecccccceeeecCcceEEEeeec----ccccccc-
Confidence 467788777666543 2111122334567788899999999999888777664455566666665321 0122222
Q ss_pred ceeeecCCCCeEEEEEeCCCCCCcceeEEEEEEeeCCCCccE-EEEecCcccEEEeCCCCCCCeEEEEEEEEcCCCCCCC
Q psy241 351 SLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFV-KQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQ 429 (753)
Q Consensus 351 ~~~~~~~~~~~v~l~W~~~~~~~~~i~~Y~v~~~~~~~~~~~-~~~~~~~~~~~~i~~L~p~~~Y~v~V~a~~~~G~~~~ 429 (753)
....-+..+.+.|.+..+. ....|.|+...++..... ....+.-...+.-..|.++..|...|.+.+..+.-..
T Consensus 78 ---~~~~~~~~~~~~w~~~~d~--~~~~Y~i~~~~gD~~f~r~~~~~n~l~~~~i~s~~~~~~~~~~~Iia~~f~~~~sf 152 (343)
T COG3401 78 ---ASLERPKSVKVFWSPHPDV--SVGKYIIQRQNGDGKFLRTGLVKNRLFVEFIDSDLGHNEKYMELIIAADFQMGKSF 152 (343)
T ss_pred ---chhcCcceeeecccccCCC--CCCeEEEEEecCchhhhhhhHHHhccchhheecccccccceeeeEEeeccccccee
Confidence 2222346699999986554 477899998776554211 1122223334556689999999999999988775544
Q ss_pred ceeEEEecCCCCCCCCCCCCCCceeEEEecCCCeEEEEEeCCCCCcccccCCCCccEEEEEEEeecCCCCCceEEecccc
Q psy241 430 KYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANI 509 (753)
Q Consensus 430 s~~~~~t~~~~~p~~~~p~~~p~~l~~~~~~~~sv~v~W~~p~~~~~~~~~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~ 509 (753)
+....-.++...|. .-.++++.....+.+.|+|+.+... ..|.|.-.... ............
T Consensus 153 sf~gVE~~~~~~P~------ei~~~~~~~d~~~~i~ls~dg~~~~----------~yy~IY~~~~g--~e~~~~ia~t~~ 214 (343)
T COG3401 153 SFTGVEATPKAEPK------EITNVRVSFDLGNNIELSEDGSEAE----------DYYRIYASDSG--NEEYGFIAQTTE 214 (343)
T ss_pred eeeeeecccccCCc------eeeeeeeecCCCCcceeeccCcccc----------ceEEEeccCCc--cccccceeeccc
Confidence 43222222222221 2234555566788999999986432 28888444432 222222233333
Q ss_pred ceEE--ecCcccCceeEEEEEEEeCC-CCCcceEEEEeeecCCCCCCCCcceEEeecCCCCeeEEEEeeCCCCCCCceeE
Q psy241 510 TSVQ--INDLRPSTQYEFTVKVVRAK-KESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISG 586 (753)
Q Consensus 510 ~~~~--l~~L~p~t~Y~~~V~a~~~~-g~s~~s~~~~~~t~~~~p~~~P~~l~~~~~~~~~~~v~l~W~~p~~~~g~i~~ 586 (753)
+.+. ..+| |..|...|.++... .++..+.....-.....+. .|....-+. ..+.+.|.|+..+.. ....
T Consensus 215 n~y~d~~egl--ga~~~y~VTtVd~~~~es~lp~~~t~~~~~g~~e-~pt~~g~t~---~~s~i~V~~E~~~~~--~av~ 286 (343)
T COG3401 215 NSYYDVKEGL--GAVEYYKVTTVDNTGFESDLPNEPTVGETGGRYE-VPTIPGETT---EASFIGVAAEQNQLR--QAVT 286 (343)
T ss_pred cchhhhhhcc--CceeEEEEEEEcCCcceeccCCccccccccCCcc-cccCCCcee---eeeeeeEEecccccc--eeeE
Confidence 4443 3444 77888888888644 3454443322222212221 121111111 334556888866432 2455
Q ss_pred EEEEEEeCCCCCceEEEEeeCceeEEEEcCCCCCCEEEEEEEEEcCCCC
Q psy241 587 YTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGS 635 (753)
Q Consensus 587 Y~V~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~ 635 (753)
|.++--.++.. ............+..+..+..|.+.|.+.+..|.
T Consensus 287 ytvyr~~~g~~----~~~f~it~~d~~d~~~ltg~~~~y~v~~v~~~gl 331 (343)
T COG3401 287 YTVYRVEDGTP----TKFFTITETDGQDNDMLTGVEYRYEVVAVDKAGL 331 (343)
T ss_pred EeeeeccCCCc----ceeeeeeeccccchhhccccceeEEEEEeccccc
Confidence 66654333211 1133334566778889999999999999999887
No 18
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=98.47 E-value=0.00022 Score=68.87 Aligned_cols=239 Identities=18% Similarity=0.154 Sum_probs=120.5
Q ss_pred ecCceeEEEEcCCCCCCeEEEEEEEEeC-CCCCCCCcceeeeeeeccC-CCccc-CCCCcceeeecCCCCeEEEEEeCCC
Q psy241 294 TAGDRRLYVITGLNKSTTYQIKLWAMNV-NGSGPATDWFSAETFSQDL-GEFTV-PDIPASLKARPGGPSSIIVSWTPPA 370 (753)
Q Consensus 294 ~~~~~~~~~i~~L~p~t~Y~i~V~a~~~-~g~~~~s~~~~~~t~~~~~-~~~~~-p~~p~~~~~~~~~~~~v~l~W~~~~ 370 (753)
-.++.+.++|.+|.|++.|.|.|.++|. .+.+..-......|.+... .+... -+....+.+.... ..-..+...|.
T Consensus 10 Cvg~~t~~t~~~L~p~t~YyfdVF~vn~~~n~ssay~gt~~~t~~~~r~~~~~Lkdg~l~~~~l~~~~-g~~~f~f~vP~ 88 (300)
T PF10179_consen 10 CVGQKTNQTLSGLKPDTTYYFDVFVVNQLTNNSSAYLGTFARTREENRSKPTRLKDGKLTQVKLKGKG-GFKFFSFKVPK 88 (300)
T ss_pred EcCCCceEEeccCCCCCeEEEEEEEEECCCCceeeeeEEEEEEccccCCCcEEcccCcEEEEEECCcC-ceeEEEEcCCc
Confidence 4566788999999999999999999997 3444333333344421000 00000 0111122222222 12334555441
Q ss_pred --CCCcceeEEE--------EEEeeCCCCccEEEEecCcccEEEeCCCCCCCeEEEEEEEEcCCCCCCCceeEEEecCCC
Q psy241 371 --DQSIMVRGFT--------LGWGKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEP 440 (753)
Q Consensus 371 --~~~~~i~~Y~--------v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~v~V~a~~~~G~~~~s~~~~~t~~~~ 440 (753)
..+..+..+. |.....+..... ...-..-..+.+.++.||..|.+++.+.+.............++...
T Consensus 89 ~~~~~~~~~l~v~~C~G~V~v~i~r~gk~l~~-~~~v~~~~~f~l~~~~~g~~Yliri~~~~~~e~~~~~kV~aast~~~ 167 (300)
T PF10179_consen 89 RSSTHQSLWLFVQSCSGSVRVEISRNGKILLS-QKNVEGLRHFRLSGVKPGERYLIRIQISNSDEGPSTFKVQAASTNPS 167 (300)
T ss_pred CCCCCccEEEEEEeCCCeEEEEEEECCeEEee-eecccceEEEEECCCCCCCeEEEEEEccCCCCCceEEEEEEecCCcc
Confidence 1111121111 111111111111 11112345789999999999999998876443322222221222211
Q ss_pred CCCCCCCCCCCceeEEEe----cCCCeEEEEEeCCCCCcccccCCCCccEEEEEEEeecCC-------------C--C--
Q psy241 441 PPQAPKVLIPPMGLKSEV----LSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGA-------------S--N-- 499 (753)
Q Consensus 441 ~p~~~~p~~~p~~l~~~~----~~~~sv~v~W~~p~~~~~~~~~~~~~~~Y~v~~~~~~~~-------------~--~-- 499 (753)
.. .-+.-|.+..+.. .+-++++|.|..... .. ..|-|..+..... . .
T Consensus 168 ~~---~~P~LP~d~~Ik~f~~lrtC~SvTIAW~~s~d--------~~-~kYCvy~~~~~~~~~~~~~~~~~n~C~~~~sr 235 (300)
T PF10179_consen 168 KQ---PYPQLPDDTSIKEFNKLRTCNSVTIAWLGSPD--------RS-IKYCVYRREEHSNYQERSVSRMPNQCLGPESR 235 (300)
T ss_pred cC---CCCCCCCCCceeEEcCCcccceEEEEEecCCC--------CC-ceEEEEEEEecCchhhhhhcccCccCCCCCcc
Confidence 11 1111455555533 345899999997532 11 3677765543221 0 0
Q ss_pred -----CceEEec---------cccceEEecCcccCceeEEEEEEEeCCCCCcceEEEEeee
Q psy241 500 -----PRYKYIN---------ANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTT 546 (753)
Q Consensus 500 -----~~~~~~~---------~~~~~~~l~~L~p~t~Y~~~V~a~~~~g~s~~s~~~~~~t 546 (753)
..+.... ......+|.+|+||+.|-|.|.+....|.+-.-....+.|
T Consensus 236 ~k~e~v~Ck~~~~~n~~~~~~~~v~tetI~~L~PG~~Yl~dV~~~~~~G~sl~Y~s~~VkT 296 (300)
T PF10179_consen 236 KKSEKVLCKYFHSPNSSEDPQRAVTTETIKGLKPGTTYLFDVYVNGPSGQSLPYRSKWVKT 296 (300)
T ss_pred ccceEEEEEEEcCCccccccccccceeecccCCCCcEEEEEEEEecCCCceeecceEEEEe
Confidence 0011111 1123457999999999999999987666655444444443
No 19
>KOG4802|consensus
Probab=98.44 E-value=5e-06 Score=80.53 Aligned_cols=180 Identities=19% Similarity=0.175 Sum_probs=111.1
Q ss_pred EEecCCCeEEEEEeCCCCCcccccCCCCccEEEEEEEee---------cCCCCCceEEec--cccceEEecCcccCceeE
Q psy241 456 SEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHL---------LGASNPRYKYIN--ANITSVQINDLRPSTQYE 524 (753)
Q Consensus 456 ~~~~~~~sv~v~W~~p~~~~~~~~~~~~~~~Y~v~~~~~---------~~~~~~~~~~~~--~~~~~~~l~~L~p~t~Y~ 524 (753)
......+++.+.|..-... .-|.+.+... .+.+...|+.+. .....+.+.++.||.=|.
T Consensus 154 y~r~~~g~~av~w~~~~~~----------~v~~~~~~vr~~w~~g~hase~~~thwQtv~~t~~e~~~~~t~~rPgRwye 223 (516)
T KOG4802|consen 154 YFRRSRGSHAVDWKIESSL----------LVYYVHVEVRSHWGRGFHASELGPTHWQTVEKTMEENTYIFTDMRPGRWYE 223 (516)
T ss_pred hhhhccCceeeeeeecccc----------ceeeeehhhhhhhcccccccccccccceeeeecCCCceeeeeecCcceeEE
Confidence 4455678899999874322 1222222111 112444555443 333467889999999999
Q ss_pred EEEEEEeCCCC---CcceEEEEeeecCCCCCCCCcceEEeecCCCCeeEEEEeeCCCCCCCceeEEEEEEEeCCCC----
Q psy241 525 FTVKVVRAKKE---SEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNT---- 597 (753)
Q Consensus 525 ~~V~a~~~~g~---s~~s~~~~~~t~~~~p~~~P~~l~~~~~~~~~~~v~l~W~~p~~~~g~i~~Y~V~~~~~~~~---- 597 (753)
|+|.|+|..|. +.++......-.+.+ |.+|.++++..+..+.....+-|.-|...+-+|..|.|.+.-.-..
T Consensus 224 frvaavn~~G~rGFs~PSkpf~ssk~pka-Pp~P~dl~l~~v~~dG~~~~~v~w~P~~sdlPv~~Yki~Ws~~v~s~k~~ 302 (516)
T KOG4802|consen 224 FRVAAVNAYGFRGFSEPSKPFPSSKNPKA-PPSPNDLKLIGVQFDGRYMLKVVWCPSKSDLPVEKYKITWSLYVNSAKAS 302 (516)
T ss_pred EEEeeeecccccccCCCCCCCCCCCCCCC-CcCcccceeeeeeecceEEEEEEeCCCCCCCcceeeEEEeehhhhhhhhh
Confidence 99999987764 444444444434444 4578889888775555555555555555567899999998653322
Q ss_pred -CceEEEEeeCceeEEEEcCCCCCCEEEEEEEEEcCCCCCCCC--CceEEEcCC
Q psy241 598 -DQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYS--STVTWTTAS 648 (753)
Q Consensus 598 -~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S--~~~~~~T~~ 648 (753)
........... .+.|.+|.|+..|.+.|+|....|.+..- ..+.|.+..
T Consensus 303 m~tks~~~k~th--q~si~~L~Pns~Y~VevqAi~y~g~~rLksek~~~F~~T~ 354 (516)
T KOG4802|consen 303 MITKSSYVKDTH--QFSIKELLPNSSYYVEVQAISYLGSRRLKSEKWMLFNTTL 354 (516)
T ss_pred cccccceeeccc--hhhhhhcCCCCeEEEEEEEEEeccCcccccceEEEEeecc
Confidence 01111122333 34499999999999999999988876552 235555543
No 20
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=98.33 E-value=0.00016 Score=69.20 Aligned_cols=319 Identities=15% Similarity=0.082 Sum_probs=184.7
Q ss_pred cceEEEEEEEEcCCcceEE----EeecccEEEEcCCCCCcEEEEEEEEEeCCCCCCCCceeEEEecCCC--CCCCCCC--
Q psy241 183 EIKHYTLYYLEEDTSVERH----VVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDK--PSEPPAN-- 254 (753)
Q Consensus 183 ~~~~Y~v~~~~~~~~~~~~----~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~~~~s~~~~~~t~~~~--p~~~~~~-- 254 (753)
.+.+|.+.....+.. ... -....+.+...+|.++..|.+.--..+..-.+..+..+...+.... +..+...
T Consensus 4 ~~~~~~~~~t~~~~~-~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~i~~~~~~~~~~~~ 82 (343)
T COG3401 4 DIDGFVLYRTKKDLK-LKRIGTIKNKYQTHYYDEGLEGEESYPYQEGTTKVDKISYDSERILVKTSFIERVRSVFASLER 82 (343)
T ss_pred cceeEEEEEEcccch-hhhhhccccchhhhhhhccccccCcceeeecccccceeeecCcceEEEeeeccccccccchhcC
Confidence 466777776655543 211 1223566778899999999988777665533444555555554221 1111111
Q ss_pred --cEEEEEeCCCCCCCCceeeEEEEEEEEcCccCCCCcEEEecCceeEEEEcCCCCCCeEEEEEEEEeCCCCCCCCccee
Q psy241 255 --SITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFS 332 (753)
Q Consensus 255 --si~l~W~~p~~~~~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~i~V~a~~~~g~~~~s~~~~ 332 (753)
.+.+-|.+-+ +-....|.|+....+.. .........+-...+.-..|.++..|...|.+.+..+.-..+-...
T Consensus 83 ~~~~~~~w~~~~----d~~~~~Y~i~~~~gD~~-f~r~~~~~n~l~~~~i~s~~~~~~~~~~~Iia~~f~~~~sfsf~gV 157 (343)
T COG3401 83 PKSVKVFWSPHP----DVSVGKYIIQRQNGDGK-FLRTGLVKNRLFVEFIDSDLGHNEKYMELIIAADFQMGKSFSFTGV 157 (343)
T ss_pred cceeeecccccC----CCCCCeEEEEEecCchh-hhhhhHHHhccchhheecccccccceeeeEEeecccccceeeeeee
Confidence 8999998754 45678899998877643 2111111233334556678999999999999988766544442111
Q ss_pred eeeeeccCCCcccCCCCcceeeecCCCCeEEEEEeCCCCCCcceeEEEEEEeeCCCCccEEEEecCcccEEEeCCCCCCC
Q psy241 333 AETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSDEITGLEPNS 412 (753)
Q Consensus 333 ~~t~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~ 412 (753)
--+. ...|..-.++++.....+.+.|+|+.++.. ..|.|+-......... .......+.+...--.-|.
T Consensus 158 E~~~------~~~P~ei~~~~~~~d~~~~i~ls~dg~~~~----~yy~IY~~~~g~e~~~-~ia~t~~n~y~d~~eglga 226 (343)
T COG3401 158 EATP------KAEPKEITNVRVSFDLGNNIELSEDGSEAE----DYYRIYASDSGNEEYG-FIAQTTENSYYDVKEGLGA 226 (343)
T ss_pred eccc------ccCCceeeeeeeecCCCCcceeeccCcccc----ceEEEeccCCcccccc-ceeeccccchhhhhhccCc
Confidence 1111 134444555666667778899999987763 3888887766555544 4444444444333233377
Q ss_pred eEEEEEEEEcCCC-CCCCceeEEEecCCCCCCCCCCCCCCceeEEEecCCCeEEEEEeCCCCCcccccCCCCccEEEEEE
Q psy241 413 DYVISLRAFNEMG-DGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRY 491 (753)
Q Consensus 413 ~Y~v~V~a~~~~G-~~~~s~~~~~t~~~~~p~~~~p~~~p~~l~~~~~~~~sv~v~W~~p~~~~~~~~~~~~~~~Y~v~~ 491 (753)
.|...|.+++..| ++..+.....-.....+..+. +|... ...+.+.|.|+.... .....|.+ |
T Consensus 227 ~~~y~VTtVd~~~~es~lp~~~t~~~~~g~~e~pt---~~g~t----~~~s~i~V~~E~~~~--------~~av~ytv-y 290 (343)
T COG3401 227 VEYYKVTTVDNTGFESDLPNEPTVGETGGRYEVPT---IPGET----TEASFIGVAAEQNQL--------RQAVTYTV-Y 290 (343)
T ss_pred eeEEEEEEEcCCcceeccCCccccccccCCccccc---CCCce----eeeeeeeEEeccccc--------ceeeEEee-e
Confidence 8889999998666 444333221111112222111 22221 123445677775422 22344555 2
Q ss_pred EeecCCCCCceEEeccccceEEecCcccCceeEEEEEEEeCCCCCc
Q psy241 492 THLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESE 537 (753)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~~~~g~s~ 537 (753)
+-. ..........+.+......+..+..|.+.|.+.+..|.+.
T Consensus 291 r~~---~g~~~~~f~it~~d~~d~~~ltg~~~~y~v~~v~~~gls~ 333 (343)
T COG3401 291 RVE---DGTPTKFFTITETDGQDNDMLTGVEYRYEVVAVDKAGLSS 333 (343)
T ss_pred ecc---CCCcceeeeeeeccccchhhccccceeEEEEEeccccccc
Confidence 222 2233344456667778888999999999999998776543
No 21
>KOG3632|consensus
Probab=98.26 E-value=8.4e-06 Score=87.49 Aligned_cols=261 Identities=20% Similarity=0.261 Sum_probs=167.0
Q ss_pred CCCCcceeeecCCCCeEEEEEeCCCCCC--cceeEEEEEEeeCCCCccEEEEecCcccEEEeCCCC-CCCeEEEEEEEEc
Q psy241 346 PDIPASLKARPGGPSSIIVSWTPPADQS--IMVRGFTLGWGKGVPDEFVKQILDVKQRSDEITGLE-PNSDYVISLRAFN 422 (753)
Q Consensus 346 p~~p~~~~~~~~~~~~v~l~W~~~~~~~--~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~-p~~~Y~v~V~a~~ 422 (753)
+.-|..+.+......++.|-|.+|..+. +.+..|.+.....- ......++.+...+..|. .+..|.+.|.+..
T Consensus 578 vpypr~~~~vkqla~sv~vawepps~pP~~~~~~~~~~~v~~el----rq~l~~gs~tka~~E~ld~~a~s~~isvq~lt 653 (1335)
T KOG3632|consen 578 VPYPRTGAAVKQLAGSVHVAWEPPSSPPFTAPARMIGATVLMEL----RQTLYAGSLTKAMQESLDNSAHSGYISVQRLT 653 (1335)
T ss_pred cccccchhhhhhhccceeeeccCCCCCCccccceeeeeecchhh----hhhcccccchHHHHhhccccCCceeeehhhhh
Confidence 3345555555566689999999977654 45666666532211 102223334444444442 4567889999999
Q ss_pred CCCCCCCceeEEEecCCCCCCCCCCCCCCceeEEEecCCCeEEEEEeCCCCCcccccCCCCccEEEEEEEeecCCCCCce
Q psy241 423 EMGDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRY 502 (753)
Q Consensus 423 ~~G~~~~s~~~~~t~~~~~p~~~~p~~~p~~l~~~~~~~~sv~v~W~~p~~~~~~~~~~~~~~~Y~v~~~~~~~~~~~~~ 502 (753)
..|...............+ ..|.++++..++..+..++|-+-.. ..-.+.|... ...
T Consensus 654 SrGsqd~lrc~Llvgg~a~-------vvpsqlrv~n~tqtSa~itwvp~ns-----------n~~Hviyln~-----eE~ 710 (1335)
T KOG3632|consen 654 SRGSQDQLRCILLVGGAAP-------VVPSQLRVWNATQTSAMITWVPFNS-----------NFLHVIYLNA-----EEP 710 (1335)
T ss_pred ccCCCCcceeeEecccccc-------ccchhhhhhhhhchhhheeeeecCC-----------CcceeeecCC-----ccC
Confidence 9998887766655544332 2788999999999999999986421 1223334322 223
Q ss_pred EEeccccceEEecCcccCceeEEEEEEEeCC-C--------CCcceEEEEeeecCCCCCCCCcceEEeecCCCCeeEEEE
Q psy241 503 KYINANITSVQINDLRPSTQYEFTVKVVRAK-K--------ESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLN 573 (753)
Q Consensus 503 ~~~~~~~~~~~l~~L~p~t~Y~~~V~a~~~~-g--------~s~~s~~~~~~t~~~~p~~~P~~l~~~~~~~~~~~v~l~ 573 (753)
.........++|-+|.|++.|.++|-+.-.. + .+.....+.++|..+.|+.+|..+++..- .....+.++
T Consensus 711 ~ps~a~~y~ytf~~lrpgt~y~a~vea~~p~q~pwdl~~v~~etr~atv~f~tLpAGppappldV~vE~g-~spg~l~vs 789 (1335)
T KOG3632|consen 711 RPSVAEMYNYTFMRLRPGTDYWASVEAALPRQEPWDLRMVPMETRQATVLFRTLPAGPPAPPLDVKVETG-GSPGRLEVS 789 (1335)
T ss_pred CCchhhhhHHHHhccCCCCccceecccccCcCCCcccccchhhhhccceeeecccCCCCCCchheeeecC-CCCceeeee
Confidence 3334555678899999999999999886441 1 23346778899999999999999998874 478899999
Q ss_pred eeCCC-----CCCC-ceeEEEEEEEeCCCCCceEEEEee-CceeEEEEcCCCCCC-EEEEEEEEEcCCCCCCC
Q psy241 574 WQPPK-----SANG-QISGYTILYSSDPNTDQWIEESVV-GDKMSTNVRGLEPGR-IYYFKIKARNSAGSSPY 638 (753)
Q Consensus 574 W~~p~-----~~~g-~i~~Y~V~~~~~~~~~~~~~~~~~-~~~~~~~l~~L~p~t-~Y~~~V~A~~~~G~g~~ 638 (753)
|.+|. -.|| .+++|.|+..... ...+... ...+.+.+..|+-+- .=.+.||.....|.+.-
T Consensus 790 wrPptldsag~sngv~vtgYavyadgqk----v~Evafptagst~VelsQlq~~l~~~~V~vRtms~~gesvd 858 (1335)
T KOG3632|consen 790 WRPPTLDSAGCSNGVAVTGYAVYADGQK----VEEVAFPTAGSTKVELSQLQDGLYHGAVGVRTMSVPGESVD 858 (1335)
T ss_pred ccCceeccccccCceeeeeeeeeeCCce----eeeeecccCCceEEEeeeehhhheecceeEEecccCccccc
Confidence 99875 2344 7899999875221 1122222 233455566666542 12356666666666433
No 22
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=98.21 E-value=1.4e-05 Score=62.62 Aligned_cols=77 Identities=32% Similarity=0.642 Sum_probs=53.8
Q ss_pred CcceEEeecCCCCeeEEEEeeCCCCCCCceeEEEEEEEeCCCC--CceEEEEeeCceeEEEEcCCCCCCEEEEEEEEEcC
Q psy241 555 PRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNT--DQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNS 632 (753)
Q Consensus 555 P~~l~~~~~~~~~~~v~l~W~~p~~~~g~i~~Y~V~~~~~~~~--~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~ 632 (753)
|.++.+... ...++.|+|+++...++ .+|.+.|...... ..+...........+.+.+|.|++.|.|+|+|++.
T Consensus 4 p~~~~~~~~--~~~~~~v~W~~~~~~~~--~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~v~v~a~~~ 79 (83)
T smart00060 4 PSNLRVTDV--TSTSVTLSWEPPPDDGI--TGYIVGYRVEYREEGSSWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNG 79 (83)
T ss_pred CCcEEEEEE--eCCEEEEEECCCCCCCC--CccEEEEEEEEecCCCccEEEEecCCccEEEEeCcCCCCEEEEEEEEEcc
Confidence 445666654 55699999997755433 6677777654322 13444444444678999999999999999999997
Q ss_pred CCC
Q psy241 633 AGS 635 (753)
Q Consensus 633 ~G~ 635 (753)
.|.
T Consensus 80 ~g~ 82 (83)
T smart00060 80 AGE 82 (83)
T ss_pred cCC
Confidence 554
No 23
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=98.10 E-value=3.1e-05 Score=60.53 Aligned_cols=76 Identities=36% Similarity=0.485 Sum_probs=53.5
Q ss_pred CCCcccEEEEEcCcEEEEEEcCCCCCCCcceEEEEEEEEcCCC---CceEEeeccccceE-eeCCcCCCEEEEEEEEEeC
Q psy241 58 SAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSE---RERAYNATARVEAI-IQGLHPNTSYTFRVVAYNA 133 (753)
Q Consensus 58 ~~P~~l~~~~~~~~si~lsW~~~~~~~~~~~~Y~v~~~~~~~~---~~~~~~~~~~~~~~-i~~L~p~t~Y~~~V~a~~~ 133 (753)
.+|.++.+......++.|+|+++...+. ..|.++|...... .+...........+ +.+|.|++.|.|+|+|.+.
T Consensus 2 ~~p~~~~~~~~~~~~~~v~W~~~~~~~~--~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~v~v~a~~~ 79 (83)
T smart00060 2 SPPSNLRVTDVTSTSVTLSWEPPPDDGI--TGYIVGYRVEYREEGSSWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNG 79 (83)
T ss_pred CCCCcEEEEEEeCCEEEEEECCCCCCCC--CccEEEEEEEEecCCCccEEEEecCCccEEEEeCcCCCCEEEEEEEEEcc
Confidence 4566688877777899999997755332 5777777654332 23333333234677 9999999999999999986
Q ss_pred CC
Q psy241 134 LG 135 (753)
Q Consensus 134 ~g 135 (753)
.|
T Consensus 80 ~g 81 (83)
T smart00060 80 AG 81 (83)
T ss_pred cC
Confidence 54
No 24
>KOG3632|consensus
Probab=98.08 E-value=0.00015 Score=78.24 Aligned_cols=254 Identities=20% Similarity=0.209 Sum_probs=155.6
Q ss_pred cEEEEEeCCCCCCCCceeeEEEEEEEEcCccCCCCcEEEecCceeEEEEcCCC-CCCeEEEEEEEEeCCCCCCCCcceee
Q psy241 255 SITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLN-KSTTYQIKLWAMNVNGSGPATDWFSA 333 (753)
Q Consensus 255 si~l~W~~p~~~~~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~-p~t~Y~i~V~a~~~~g~~~~s~~~~~ 333 (753)
++.|-|++|......+....|.+.....-. .....++.+...+..|. .+..|.+.|.+..+.|.+.....+..
T Consensus 593 sv~vawepps~pP~~~~~~~~~~~v~~elr------q~l~~gs~tka~~E~ld~~a~s~~isvq~ltSrGsqd~lrc~Ll 666 (1335)
T KOG3632|consen 593 SVHVAWEPPSSPPFTAPARMIGATVLMELR------QTLYAGSLTKAMQESLDNSAHSGYISVQRLTSRGSQDQLRCILL 666 (1335)
T ss_pred ceeeeccCCCCCCccccceeeeeecchhhh------hhcccccchHHHHhhccccCCceeeehhhhhccCCCCcceeeEe
Confidence 899999997755556777788876654421 11123333444444443 34578899999999998776654433
Q ss_pred eeeeccCCCcccCCCCcceeeecCCCCeEEEEEeCCCCCCcceeEEEEEEeeCCCCccEEEEecCcccEEEeCCCCCCCe
Q psy241 334 ETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSDEITGLEPNSD 413 (753)
Q Consensus 334 ~t~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~ 413 (753)
.- . .++..|.++++.+.+.++..++|-+..... . ..|+..... . .........+++.+|.|++.
T Consensus 667 vg-g------~a~vvpsqlrv~n~tqtSa~itwvp~nsn~---~-Hviyln~eE---~--~ps~a~~y~ytf~~lrpgt~ 730 (1335)
T KOG3632|consen 667 VG-G------AAPVVPSQLRVWNATQTSAMITWVPFNSNF---L-HVIYLNAEE---P--RPSVAEMYNYTFMRLRPGTD 730 (1335)
T ss_pred cc-c------cccccchhhhhhhhhchhhheeeeecCCCc---c-eeeecCCcc---C--CCchhhhhHHHHhccCCCCc
Confidence 22 1 467889999999999999999998765431 1 123222211 1 12334555678999999999
Q ss_pred EEEEEEEEcC-CC-----CCC----CceeEEEecCCCCCCCCCCCCCCceeEEEec-CCCeEEEEEeCCCCCcccccCCC
Q psy241 414 YVISLRAFNE-MG-----DGP----QKYESLRTRNEPPPQAPKVLIPPMGLKSEVL-SPYSMRISWIDTTLPDQFQQHGE 482 (753)
Q Consensus 414 Y~v~V~a~~~-~G-----~~~----~s~~~~~t~~~~~p~~~~p~~~p~~l~~~~~-~~~sv~v~W~~p~~~~~~~~~~~ 482 (753)
|.++|-+.-. .+ .-. .....+.+...++|. ||.++++... +.+.+.++|.++.....--.++.
T Consensus 731 y~a~vea~~p~q~pwdl~~v~~etr~atv~f~tLpAGppa------ppldV~vE~g~spg~l~vswrPptldsag~sngv 804 (1335)
T KOG3632|consen 731 YWASVEAALPRQEPWDLRMVPMETRQATVLFRTLPAGPPA------PPLDVKVETGGSPGRLEVSWRPPTLDSAGCSNGV 804 (1335)
T ss_pred cceecccccCcCCCcccccchhhhhccceeeecccCCCCC------CchheeeecCCCCceeeeeccCceeccccccCce
Confidence 9999988754 11 111 123445555555555 8888888654 57899999999977542233456
Q ss_pred CccEEEEEEEeecCCCCCceEEeccccceEEecCcccC-ceeEEEEEEEeCCCCCcce
Q psy241 483 EGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPS-TQYEFTVKVVRAKKESEWS 539 (753)
Q Consensus 483 ~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~-t~Y~~~V~a~~~~g~s~~s 539 (753)
.+.+|.|..... .-.....-....+.+.+..|.-+ ..-.|.|+...-.|++..+
T Consensus 805 ~vtgYavyadgq---kv~Evafptagst~VelsQlq~~l~~~~V~vRtms~~gesvds 859 (1335)
T KOG3632|consen 805 AVTGYAVYADGQ---KVEEVAFPTAGSTKVELSQLQDGLYHGAVGVRTMSVPGESVDS 859 (1335)
T ss_pred eeeeeeeeeCCc---eeeeeecccCCceEEEeeeehhhheecceeEEecccCcccccc
Confidence 788999854311 11112222233445555555542 3345666665555555433
No 25
>KOG4152|consensus
Probab=98.03 E-value=0.0004 Score=69.76 Aligned_cols=123 Identities=19% Similarity=0.260 Sum_probs=82.5
Q ss_pred EcCCCCCCeEEEEEEEEeCCCCCCCCcceeeeeeeccCCCcccCCCCcceeeecCCCCeEEEEEeCCCCCC-cceeEEEE
Q psy241 303 ITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQS-IMVRGFTL 381 (753)
Q Consensus 303 i~~L~p~t~Y~i~V~a~~~~g~~~~s~~~~~~t~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~~~~~~-~~i~~Y~v 381 (753)
-..|.+|+.|+|+|.|.|..|.++++....+.|.. +..|.+|..+.++..- ..+.+.|.+|..++ +.|..|..
T Consensus 651 k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~-----pG~P~apS~~ri~k~~-eGi~l~weppt~p~sg~Iieys~ 724 (830)
T KOG4152|consen 651 KTSLVTGQAYRFRVTAINGKGPGPASTILKLKTCA-----PGKPTAPSGARIKKTI-EGISLVWEPPTKPGSGTIIEYSP 724 (830)
T ss_pred ccccccccceeeeeeeeeccCCCchhhheeeeecc-----CCCCCCcccccccccc-cceeecccCCCCCCCcceEEeeh
Confidence 35788999999999999999999999999988854 2566677776666554 78999999998875 67777776
Q ss_pred EEeeCC---CCccEE---E-EecCcccEE---------EeCCCCCCCeEEEEEEEEcCCCCCCCce
Q psy241 382 GWGKGV---PDEFVK---Q-ILDVKQRSD---------EITGLEPNSDYVISLRAFNEMGDGPQKY 431 (753)
Q Consensus 382 ~~~~~~---~~~~~~---~-~~~~~~~~~---------~i~~L~p~~~Y~v~V~a~~~~G~~~~s~ 431 (753)
+..... ...... + ..-+-.+.+ .+.+...+..-.|+|.|.|..|.|+...
T Consensus 725 ylAi~tq~~~~~~sql~fmr~ycg~~t~c~vt~g~l~tA~~d~t~~paivfri~aknekGyGpatq 790 (830)
T KOG4152|consen 725 YLAIITQAGATGVSQLPFMRSYCGIITTCVVTSGKLITAVPDITTGPAIVFRIVAKNEKGYGPATQ 790 (830)
T ss_pred hhHhhhhhhccCccccceeeeecccceeeEEecccceeeccccccCcceEEEEEecCCCCCCcceE
Confidence 543211 000000 0 001111111 1223344667789999999999887554
No 26
>KOG0613|consensus
Probab=97.90 E-value=0.0012 Score=74.73 Aligned_cols=443 Identities=16% Similarity=0.169 Sum_probs=217.7
Q ss_pred ceEEeeecCcEEEEEEeCCCCCCC-cceEEEEEEEEcCCcceEEE-eecccEEEEcCCCCCcEEEEEEEEEeCCCCCCCC
Q psy241 159 NVNIPVVGTSSLLVTWEKPTVTNG-EIKHYTLYYLEEDTSVERHV-VTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTS 236 (753)
Q Consensus 159 ~l~~~~~~~~sv~lsW~~p~~~~~-~~~~Y~v~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~~~~s 236 (753)
+-....+...-+...|..+..+.+ ...+|.|..+..+...+... ......-.+..+. |.++|+++-..|...+-
T Consensus 145 ~~~sv~~~~~~v~~~~~~~~~d~~~k~~~~iie~~~~g~s~~~~~l~~~~~~s~~~~a~----~e~~v~~v~s~gqp~~~ 220 (1205)
T KOG0613|consen 145 NRESVLVHRARVLPAWRPPREDGGRKREEYIIERRQAGRSPWLKRLTQPTDDSTDTDAH----YESRVRAVVSAGQPEPL 220 (1205)
T ss_pred CccceeecCceecccccCCccCccceeecceEEEEeccCCCcccccccccCCcceeccc----cceeEEEEEecCCCccc
Confidence 333345566778889998774443 77889999888777655222 2112222222233 56666666555554332
Q ss_pred ceeEEEecCCCCCCCCCC---------cEEEEEeCCCCCCCCceeeEEEEEEEEcCccCCCCcEEEecCceeEEEEcCCC
Q psy241 237 QELSVQTLSDKPSEPPAN---------SITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLN 307 (753)
Q Consensus 237 ~~~~~~t~~~~p~~~~~~---------si~l~W~~p~~~~~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~ 307 (753)
....+.-....|...+.. -+.+.|..+.. .....+.+|.+.....-................+.....-.
T Consensus 221 ~~~~~~g~~i~~~~~~~~s~t~e~s~~~i~~~l~~~~G-~~~~~~~~~l~e~~~~~~~~t~~i~~~~~~~~~s~t~~~~~ 299 (1205)
T KOG0613|consen 221 ERWEILGELIAPGSAPSMSVTLEASDRKIQLTLRAPRG-PYSAHILGYLIEQRKHKGGNTKTIQNDGPEPELSWTVADKR 299 (1205)
T ss_pred hhhhhcccccCCCCccccccccchhheeeeEEeecCCC-chHHHHhcchhhhcccCCCccccccccCCccccceeeeccc
Confidence 221111112222222222 67777776652 22334556666555422111111111133334455555556
Q ss_pred CCCeEEEEEEEEeCCCCCCCCcceeeeeeeccCCCcccCCCCcceeeecCCCCeEEEEEeCCCCCCc-ceeEEEEEEeeC
Q psy241 308 KSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSI-MVRGFTLGWGKG 386 (753)
Q Consensus 308 p~t~Y~i~V~a~~~~g~~~~s~~~~~~t~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~~~~~~~-~i~~Y~v~~~~~ 386 (753)
.+..|.+++...-..|.+.+.......+.. .....+...+.++.+.....+.+.+.|......-+ .+.+|.+.-...
T Consensus 300 ~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa--~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~ 377 (1205)
T KOG0613|consen 300 QGCQDRFKVTEEAPIGKGKPGPESLQAAAA--RPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSS 377 (1205)
T ss_pred CCcccceeeeEEeeccccccCchhhhhhcc--CCccccccccccceeccccCcceeecccccCCcCCchheeeccccccc
Confidence 778888888888777765443322222211 11123445566777888888889999976543322 255555543332
Q ss_pred CCCccE-EEEecCcccEEEeCCCCCCCeEEEEEEEEcCCCCCCCceeEEEecCCCCCCCCCCCCCCceeEEEe------c
Q psy241 387 VPDEFV-KQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEV------L 459 (753)
Q Consensus 387 ~~~~~~-~~~~~~~~~~~~i~~L~p~~~Y~v~V~a~~~~G~~~~s~~~~~t~~~~~p~~~~p~~~p~~l~~~~------~ 459 (753)
....+. ...-......+.+.++.++..|..++.|.|..|............... . ..|..+.... .
T Consensus 378 ~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~--g-----t~~~~~kk~~~~t~~L~ 450 (1205)
T KOG0613|consen 378 ESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMP--G-----TQPPKFKKDVSTTDLLT 450 (1205)
T ss_pred ccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhcccccC--C-----CCCcccccccccccccc
Confidence 222111 122233445677889999999999999999998665443332222111 0 0111111111 1
Q ss_pred CCCeEEEEEeCCCCCcccccCCCCccEEEEEEEeecC------CCCCceEEeccccceEEecCcccCceeEEEEEEEeCC
Q psy241 460 SPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLG------ASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAK 533 (753)
Q Consensus 460 ~~~sv~v~W~~p~~~~~~~~~~~~~~~Y~v~~~~~~~------~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~~~~ 533 (753)
...++.+.-..+..+. -+.+..... +.............-..+.++..+..|.+..+-..+.
T Consensus 451 ~~~~i~~~~~~~s~~~------------~~~~~tt~~~~~~~s~~s~~l~r~~~tslLlk~~~~~~~A~~~~a~~~~~~k 518 (1205)
T KOG0613|consen 451 VKDEITVRTPDSSTSM------------PMTTVTTIKDGLPLSDRSVTLTRDVLTSLLLKVASLSDGAQYTRALRTLQGK 518 (1205)
T ss_pred CCcccccccCCCCccc------------cceeEeeccCCcccccccccccccchhhheeeccCCCccchhhhhhhccCCC
Confidence 1122222222211110 011111100 0111111122344556678888898887776665554
Q ss_pred CCCcceEEEEeeecCCCCCCCCcceEEeecCCCCeeEEEEeeCCCCCCCce-eEEEEEEEeCCCCCceEE-EEeeCceeE
Q psy241 534 KESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQI-SGYTILYSSDPNTDQWIE-ESVVGDKMS 611 (753)
Q Consensus 534 g~s~~s~~~~~~t~~~~p~~~P~~l~~~~~~~~~~~v~l~W~~p~~~~g~i-~~Y~V~~~~~~~~~~~~~-~~~~~~~~~ 611 (753)
.......... ..-..++..+..... -.+...|.|.+-....+.+ ..|-+.-. .- +.|.. ....+ +.
T Consensus 519 ~~~~~~~~l~-----~~~s~a~~~~~~~~~--~~g~p~l~~~~~~~E~~~vs~~~~~a~~-ql--g~~~~~~~r~g--tt 586 (1205)
T KOG0613|consen 519 PVPSLDRKLP-----AAKSSAPKPIHTQEN--QPGTPTLEWEPKPAEASKVSLHYASATR-QL--GVWRVPESRPG--TT 586 (1205)
T ss_pred CCCccccccc-----ccccCCccccccccc--CCCCcccccCCCcccccccchhhhhhhh-hc--cCCcccccCCC--cc
Confidence 3322111111 011122211111111 4456667777543222211 22332222 11 22222 12233 67
Q ss_pred EEEcCCCCCCEEEEEEEEEcCCCCCCCC
Q psy241 612 TNVRGLEPGRIYYFKIKARNSAGSSPYS 639 (753)
Q Consensus 612 ~~l~~L~p~t~Y~~~V~A~~~~G~g~~S 639 (753)
.++.++.|+..|.+++-+.+..|.+..+
T Consensus 587 ~t~~~~~p~~~~~~t~~~k~~~gE~~ps 614 (1205)
T KOG0613|consen 587 ETIGSILPGHEYHVTIKAKNELGESRPS 614 (1205)
T ss_pred cccccccccccceeehhhhhcccccCCC
Confidence 8888999999999999999999998776
No 27
>KOG4367|consensus
Probab=97.64 E-value=7.6e-05 Score=72.69 Aligned_cols=89 Identities=27% Similarity=0.418 Sum_probs=71.0
Q ss_pred eEEeecCCCCeeEEEEeeCCCCCCCceeEEEEEEEeCCCCCceEEEEeeCceeEEEEcCCCCCCEEEEEEEEEcCCCCCC
Q psy241 558 LTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSP 637 (753)
Q Consensus 558 l~~~~~~~~~~~v~l~W~~p~~~~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~ 637 (753)
+....-....++++|+|..|.....+.+||.+++...++ +++ .....+..+-++++||.-++.|..||.|+|..|.++
T Consensus 443 lq~~ec~t~nns~t~~wkqp~~~~~~~dg~~leld~g~~-g~f-revy~g~etmctvdglhfns~y~arvka~n~tg~s~ 520 (699)
T KOG4367|consen 443 LQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNG-GQF-REVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSP 520 (699)
T ss_pred eehhhhhccCCceEEEeecCCCCCCCCcceEEEeecCCC-Cce-eEEEecCceeEEecceecchhHHHHHHHhhccCCCc
Confidence 343333346789999999776667789999999865543 444 345677788999999999999999999999999999
Q ss_pred CCCceEEEcCC
Q psy241 638 YSSTVTWTTAS 648 (753)
Q Consensus 638 ~S~~~~~~T~~ 648 (753)
+|..+..+|..
T Consensus 521 ys~tl~lqts~ 531 (699)
T KOG4367|consen 521 YSKTLVLQTSE 531 (699)
T ss_pred ccceeEeeecc
Confidence 99988887754
No 28
>KOG4152|consensus
Probab=97.55 E-value=0.00037 Score=70.02 Aligned_cols=127 Identities=21% Similarity=0.288 Sum_probs=86.4
Q ss_pred cCcccCceeEEEEEEEeCCCCCcceEEEEeeecCCCCCCCCcceEEeecCCCCeeEEEEeeCCCCC-CCceeEEEEEEEe
Q psy241 515 NDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSA-NGQISGYTILYSS 593 (753)
Q Consensus 515 ~~L~p~t~Y~~~V~a~~~~g~s~~s~~~~~~t~~~~p~~~P~~l~~~~~~~~~~~v~l~W~~p~~~-~g~i~~Y~V~~~~ 593 (753)
..|.+|+.|.|+|.|.|+.|.++++....+.|....-+.+|..+++.. +-..+.|.|++|..+ .|.|..|..+..-
T Consensus 652 ~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~pG~P~apS~~ri~k---~~eGi~l~weppt~p~sg~Iieys~ylAi 728 (830)
T KOG4152|consen 652 TSLVTGQAYRFRVTAINGKGPGPASTILKLKTCAPGKPTAPSGARIKK---TIEGISLVWEPPTKPGSGTIIEYSPYLAI 728 (830)
T ss_pred cccccccceeeeeeeeeccCCCchhhheeeeeccCCCCCCcccccccc---cccceeecccCCCCCCCcceEEeehhhHh
Confidence 468899999999999999999999998888886555456788788776 678999999999876 5688888776532
Q ss_pred CC-----CC-CceEEEEeeCceeEEE---------EcCCCCCCEEEEEEEEEcCCCCCCCCCceEE
Q psy241 594 DP-----NT-DQWIEESVVGDKMSTN---------VRGLEPGRIYYFKIKARNSAGSSPYSSTVTW 644 (753)
Q Consensus 594 ~~-----~~-~~~~~~~~~~~~~~~~---------l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~ 644 (753)
.. +. ........-+-.+.+. +.+...+-.-.|||.|+|..|.|+.......
T Consensus 729 ~tq~~~~~~sql~fmr~ycg~~t~c~vt~g~l~tA~~d~t~~paivfri~aknekGyGpatqvrwl 794 (830)
T KOG4152|consen 729 ITQAGATGVSQLPFMRSYCGIITTCVVTSGKLITAVPDITTGPAIVFRIVAKNEKGYGPATQVRWL 794 (830)
T ss_pred hhhhhccCccccceeeeecccceeeEEecccceeeccccccCcceEEEEEecCCCCCCcceEEEec
Confidence 11 10 0000111111111111 2234445667899999999999887554433
No 29
>KOG0613|consensus
Probab=97.50 E-value=0.0088 Score=68.10 Aligned_cols=543 Identities=14% Similarity=0.076 Sum_probs=263.1
Q ss_pred cCCCCCCcccEEEEEcCcEEEEEEcCCCCCCC-cceEEEEEEEEcCCCCceEEeeccccceEeeCCcCCCEEEEEEEEEe
Q psy241 54 LTLPSAPQSVSAIMVGPRSVALRWLPPTLPRG-EILVYCVLYKREGSERERAYNATARVEAIIQGLHPNTSYTFRVVAYN 132 (753)
Q Consensus 54 ~~~P~~P~~l~~~~~~~~si~lsW~~~~~~~~-~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~ 132 (753)
..++.+|.+-....+...-+...|..+..+++ ....|.|..+..++..+...........++..+. |.++|+++.
T Consensus 137 e~pd~~~~~~~sv~~~~~~v~~~~~~~~~d~~~k~~~~iie~~~~g~s~~~~~l~~~~~~s~~~~a~----~e~~v~~v~ 212 (1205)
T KOG0613|consen 137 EKPDPPPSNRESVLVHRARVLPAWRPPREDGGRKREEYIIERRQAGRSPWLKRLTQPTDDSTDTDAH----YESRVRAVV 212 (1205)
T ss_pred cCCCCCCCCccceeecCceecccccCCccCccceeecceEEEEeccCCCcccccccccCCcceeccc----cceeEEEEE
Confidence 34445556655566677888999999886555 5789999999888776655443333333344443 666666665
Q ss_pred CCCCccCCCceEEEccCCCCCCCCCcceEEe---eecCcEEEEEEeCCCCC-CCcceEEEEEEEE-cCCcce---EEEee
Q psy241 133 ALGAGLASSALPVKTEPEDHVPSPPLNVNIP---VVGTSSLLVTWEKPTVT-NGEIKHYTLYYLE-EDTSVE---RHVVT 204 (753)
Q Consensus 133 ~~g~~~~s~~~~~~t~~~~~~P~~p~~l~~~---~~~~~sv~lsW~~p~~~-~~~~~~Y~v~~~~-~~~~~~---~~~~~ 204 (753)
..|...+-....+.-. ++.+...++.. .....-+.+.|..+... ...+.+|.+.... .+...+ .....
T Consensus 213 s~gqp~~~~~~~~~g~----~i~~~~~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~~~~~~t~~i~~~~~~ 288 (1205)
T KOG0613|consen 213 SAGQPEPLERWEILGE----LIAPGSAPSMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRKHKGGNTKTIQNDGPE 288 (1205)
T ss_pred ecCCCccchhhhhccc----ccCCCCccccccccchhheeeeEEeecCCCchHHHHhcchhhhcccCCCccccccccCCc
Confidence 5554433222222111 23333333333 33445677777765421 1245566665544 222211 22233
Q ss_pred cccEEEEcCCCCCcEEEEEEEEEeCCCCCCCCceeEEEecCCCCCCCCCC------------cEEEEEeCCCCCCCCcee
Q psy241 205 PQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPAN------------SITVRWQPPSRRGQNGII 272 (753)
Q Consensus 205 ~~~~~~i~~L~p~t~Y~~~V~a~n~~g~~~~s~~~~~~t~~~~p~~~~~~------------si~l~W~~p~~~~~~~~~ 272 (753)
...+++...-..+..|.+.|...-..|.+.+.......+....|..+... .+.+.|..... .....+
T Consensus 289 ~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~-~~p~~~ 367 (1205)
T KOG0613|consen 289 PELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGT-QKPDEA 367 (1205)
T ss_pred cccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCC-cCCchh
Confidence 44556666677888899999988777776554333222232222222222 66777755431 111224
Q ss_pred eEEEEEEEEcCccCCCCcEEEecCceeEEEEcCCCCCCeEEEEEEEEeCCCCCCCCcceeeeeeeccCCCcccCCCCcce
Q psy241 273 TGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASL 352 (753)
Q Consensus 273 ~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~i~V~a~~~~g~~~~s~~~~~~t~~~~~~~~~~p~~p~~~ 352 (753)
.+|.+.-......++. ....-......+.+.++.++..|..++.|.|..|.........+.-.. .-..|..+
T Consensus 368 ~~~~~~~~~~~~~~~~-~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~-------~gt~~~~~ 439 (1205)
T KOG0613|consen 368 QGYHGEEVSSESLGAL-PCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEM-------PGTQPPKF 439 (1205)
T ss_pred eeeccccccccccccc-ccccccccCcchhhhhcCcccccccccceeccCCcccccchhhccccc-------CCCCCccc
Confidence 4555544333322221 111123344566778899999999999999988865443332222111 00111111
Q ss_pred eeecC------CCCeEEEEEeCCCCCCcceeEEEEEEeeCC---CCccEE-EEecCcccEEEeCCCCCCCeEEEEEEEEc
Q psy241 353 KARPG------GPSSIIVSWTPPADQSIMVRGFTLGWGKGV---PDEFVK-QILDVKQRSDEITGLEPNSDYVISLRAFN 422 (753)
Q Consensus 353 ~~~~~------~~~~v~l~W~~~~~~~~~i~~Y~v~~~~~~---~~~~~~-~~~~~~~~~~~i~~L~p~~~Y~v~V~a~~ 422 (753)
..... ....+.+.-..+..+. . .-.+.+.... ...... ..-.....-..+.++..+..|.+..+-.+
T Consensus 440 kk~~~~t~~L~~~~~i~~~~~~~s~~~--~-~~~~tt~~~~~~~s~~s~~l~r~~~tslLlk~~~~~~~A~~~~a~~~~~ 516 (1205)
T KOG0613|consen 440 KKDVSTTDLLTVKDEITVRTPDSSTSM--P-MTTVTTIKDGLPLSDRSVTLTRDVLTSLLLKVASLSDGAQYTRALRTLQ 516 (1205)
T ss_pred cccccccccccCCcccccccCCCCccc--c-ceeEeeccCCcccccccccccccchhhheeeccCCCccchhhhhhhccC
Confidence 11111 1122222222211110 0 0111111111 111100 11112333456677778878866555544
Q ss_pred CCCCCCCceeEEEecCCCCCCCCCCCCCCceeEEEecCCCeEEEEEeCCCCCcccccCCCCccEEEEEEEeecCCCCCce
Q psy241 423 EMGDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRY 502 (753)
Q Consensus 423 ~~G~~~~s~~~~~t~~~~~p~~~~p~~~p~~l~~~~~~~~sv~v~W~~p~~~~~~~~~~~~~~~Y~v~~~~~~~~~~~~~ 502 (753)
..+............. .++..+.....-.+...+.|..-.... .....+|.+.-... +....
T Consensus 517 ~k~~~~~~~~l~~~~s----------~a~~~~~~~~~~~g~p~l~~~~~~~E~-----~~vs~~~~~a~~ql---g~~~~ 578 (1205)
T KOG0613|consen 517 GKPVPSLDRKLPAAKS----------SAPKPIHTQENQPGTPTLEWEPKPAEA-----SKVSLHYASATRQL---GVWRV 578 (1205)
T ss_pred CCCCCccccccccccc----------CCcccccccccCCCCcccccCCCcccc-----cccchhhhhhhhhc---cCCcc
Confidence 4333222211111110 022122222223455566666532211 01111222221111 11111
Q ss_pred EEeccccceEEecCcccCceeEEEEEEEeCCCCCcceEEEEeeecCCCCC---CCCcceEEeecCCCCeeEEEEeeCCCC
Q psy241 503 KYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPA---SAPRDLTVVSKEGDPSLVNLNWQPPKS 579 (753)
Q Consensus 503 ~~~~~~~~~~~l~~L~p~t~Y~~~V~a~~~~g~s~~s~~~~~~t~~~~p~---~~P~~l~~~~~~~~~~~v~l~W~~p~~ 579 (753)
...... +..++.++.|++.|.+++-+.+..|++..+.... +.....+. ..|..-.... .......++|.....
T Consensus 579 ~~~r~g-tt~t~~~~~p~~~~~~t~~~k~~~gE~~ps~~~~-t~k~~D~~q~~~~~~~~~~~k--s~~~~~k~s~l~~l~ 654 (1205)
T KOG0613|consen 579 PESRPG-TTETIGSILPGHEYHVTIKAKNELGESRPSSKST-TLKWQDPSQLKRRPVSEPSYK--SPDSSQKPSKLVGLS 654 (1205)
T ss_pred cccCCC-cccccccccccccceeehhhhhcccccCCCCCCc-cccccccccccccccCCcccc--ccccccchhcccchh
Confidence 111122 6778888999999999999999999887663111 11111110 1111111111 156788899997653
Q ss_pred CCC-ceeEEEEEEEeCCCCCceEEEEeeCceeEEEEcCCCCCCEEEEEEEEEcCCCCCCC
Q psy241 580 ANG-QISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPY 638 (753)
Q Consensus 580 ~~g-~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~ 638 (753)
... ....|....-..+....+.............+..+.+.+.|.+.+.+-+..+..+.
T Consensus 655 k~~~~a~~~~~~~~~vd~~~K~kv~~~~~e~d~~i~~~~~t~si~~p~k~~e~~~~~~~~ 714 (1205)
T KOG0613|consen 655 KMDLPANLESQVKPTVVSSPKKKVKKKKQEKDLEILAKKGTTSIVEPEKPPESEAATPAE 714 (1205)
T ss_pred hccccccceeeeeccccCCccccccccccccchhhhccCCCCcccccccCCccccCCccc
Confidence 222 33444444333333333433333334445667788888888888888887776444
No 30
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=97.49 E-value=0.00044 Score=57.29 Aligned_cols=88 Identities=20% Similarity=0.311 Sum_probs=60.6
Q ss_pred CCCcceEEeecCCCCeeEEEEeeCCCCC---CC---------ceeEEEEEEEeCCCCCceEEEEeeCceeEEEEcCCCCC
Q psy241 553 SAPRDLTVVSKEGDPSLVNLNWQPPKSA---NG---------QISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPG 620 (753)
Q Consensus 553 ~~P~~l~~~~~~~~~~~v~l~W~~p~~~---~g---------~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~ 620 (753)
.||. +.+.. ..+.+.|.+.+|..+ ++ .-..|.|.|+..... ............+.|.+|.|+
T Consensus 4 gPP~-v~v~~---~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~--~~~~~~~~~~~~~~l~~L~p~ 77 (106)
T PF09294_consen 4 GPPS-VNVSS---CGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSN--EKKKEIETKNSSVTLSDLKPG 77 (106)
T ss_dssp -SSE-EEEEE---ETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTS--CEEEEEESSSEEEEEES--TT
T ss_pred cCCE-EEEEE---CCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCc--cceEEEeecCCEEEEeCCCCC
Confidence 3565 77755 678999999988511 11 124699999988764 334456666778899999999
Q ss_pred CEEEEEEEEEcC-CC-CCCCCCceEEEc
Q psy241 621 RIYYFKIKARNS-AG-SSPYSSTVTWTT 646 (753)
Q Consensus 621 t~Y~~~V~A~~~-~G-~g~~S~~~~~~T 646 (753)
+.|.|+|+|... .. .|.+|.+..++|
T Consensus 78 t~YCv~V~~~~~~~~~~s~~S~~~C~~t 105 (106)
T PF09294_consen 78 TNYCVSVQAFSPSQNKNSQPSEPQCITT 105 (106)
T ss_dssp SEEEEEEEEEECSSTEEEEEBSEEEEE-
T ss_pred CCEEEEEEEEeccCCCcCCCCCCEeEeC
Confidence 999999999433 22 388999888877
No 31
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=97.35 E-value=0.0016 Score=53.73 Aligned_cols=83 Identities=25% Similarity=0.234 Sum_probs=59.7
Q ss_pred cCCCCCCcccEEEEEcCcEEEEEEcCCCCCCCcceEEEEEEEEcCCCCceEEe-ecc-ccceE-eeCCc--CCCEEEEEE
Q psy241 54 LTLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYN-ATA-RVEAI-IQGLH--PNTSYTFRV 128 (753)
Q Consensus 54 ~~~P~~P~~l~~~~~~~~si~lsW~~~~~~~~~~~~Y~v~~~~~~~~~~~~~~-~~~-~~~~~-i~~L~--p~t~Y~~~V 128 (753)
.....+|.||++....- ...|.|+++.... ....|.|+|+..+...|.... ... ..+++ +++.. +...|.+||
T Consensus 19 ~~~lp~P~nv~~~s~nf-~~iL~W~~~~~~~-~~~~ytVq~~~~~~~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~rV 96 (107)
T PF01108_consen 19 SASLPAPQNVTVDSVNF-KHILRWDPGPGSP-PNVTYTVQYKKYGSSSWKDVPGCQNITETSCDLTDETSDPSESYYARV 96 (107)
T ss_dssp -SSGSSCEEEEEEEETT-EEEEEEEESTTSS-STEEEEEEEEESSTSCEEEECCEEEESSSEEECTTCCTTTTSEEEEEE
T ss_pred cccCCCCCeeEEEEECC-ceEEEeCCCCCCC-CCeEEEEEEEecCCcceeeccceecccccceeCcchhhcCcCCEEEEE
Confidence 34456899999998755 4679999955433 468999999976777776652 222 45777 77654 789999999
Q ss_pred EEEeCCCCcc
Q psy241 129 VAYNALGAGL 138 (753)
Q Consensus 129 ~a~~~~g~~~ 138 (753)
+|..+...|.
T Consensus 97 ~A~~~~~~S~ 106 (107)
T PF01108_consen 97 RAEVGNQTSD 106 (107)
T ss_dssp EEEETTEEEE
T ss_pred EEEeCCccCC
Confidence 9997665543
No 32
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=97.17 E-value=1.3 Score=55.93 Aligned_cols=188 Identities=19% Similarity=0.178 Sum_probs=87.2
Q ss_pred eeCCcCCCEEEEEEEEEeCCCCccCCCceEEEccCCCCCCCCCcceEEe-----eecCcEEEEEEeCCCCCCCcceEEEE
Q psy241 115 IQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIP-----VVGTSSLLVTWEKPTVTNGEIKHYTL 189 (753)
Q Consensus 115 i~~L~p~t~Y~~~V~a~~~~g~~~~s~~~~~~t~~~~~~P~~p~~l~~~-----~~~~~sv~lsW~~p~~~~~~~~~Y~v 189 (753)
+.-.+|| .|.+++.|.|..|....+..+.+.-. ...|.+. ......+.++-.- ..|....|..
T Consensus 1664 vt~~~pG-~Y~VtL~aSN~vG~~t~s~~i~v~ep--------i~~L~L~aS~~~aavn~~V~fs~~l---t~GS~vty~W 1731 (2740)
T TIGR00864 1664 LNPLEAG-PCDIFLQAANLLGQATADCTIDFLEP--------AGNLMLQASDNPAAVNALINLSAEL---AEGSGLQYRW 1731 (2740)
T ss_pred EecCCCc-eEEEEEEEeecccceeeEEEEEEEEE--------cCceEEeccCCcccCCCeEEEEEEe---cCCCCcEEEE
Confidence 5556776 79999999999998766655544421 1122111 0112233333322 2233344554
Q ss_pred EEEEcCCcceEEEeecccEEEEcCCCCCcEEEEEEEEEeCCCCCCCCceeEEEecCCCCC----CCCC-----CcEEEEE
Q psy241 190 YYLEEDTSVERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPS----EPPA-----NSITVRW 260 (753)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~~~~s~~~~~~t~~~~p~----~~~~-----~si~l~W 260 (753)
.+..... +. .......++ ...--.|.+.|.|.|..|....+..+.+.-...-.. .+.. ....+.|
T Consensus 1732 ~~gdG~s--~~-~s~p~~tHt---f~~~G~y~VtVta~N~vss~~~s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F 1805 (2740)
T TIGR00864 1732 FLEEGDD--LE-TSEPFMSHS---FPSAGLHLVTMKAFNELGSANASEEVDVQEPISGLKIRAADAGEQNFFAADSSVCF 1805 (2740)
T ss_pred EECCCCC--cc-cCCCceEEE---ccCCceEEEEEEEEccccccceeEEEEEEeccccceEecCCCCcccceecCcEEEE
Confidence 4433211 10 000001111 222346999999999998654433333322211000 0000 0223344
Q ss_pred eCCCCCCCCceeeEEEEEEEEcCccCCCCcEEEecCceeEEEEcCCCCCCeEEEEEEEEeCCCCCCCCcceeeee
Q psy241 261 QPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAET 335 (753)
Q Consensus 261 ~~p~~~~~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~i~V~a~~~~g~~~~s~~~~~~t 335 (753)
..-. ..|....|.-.+. +. .. ..+ .+...+-.++| .|.|++.|.|..+.-..+..+.+..
T Consensus 1806 ~a~v---stGsnVsw~W~f~--~g-~s------~~g--k~v~~Tf~~aG-~ytV~L~AsN~vs~~~~s~~~~VQe 1865 (2740)
T TIGR00864 1806 QGEL---ATGTNVSWCWAID--GG-SS------KMG--KHACMTFPDAG-TFAIRLNASNAVSGKSASREFFAEE 1865 (2740)
T ss_pred EEEc---cCCCeeEEEEEeC--CC-Cc------ccc--ceeEEecCCCe-EEEEEEEEEcccCcceeeeeEEEEE
Confidence 3221 1233334443332 11 10 011 23333444555 8999999999887766665555543
No 33
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=97.10 E-value=0.0035 Score=51.75 Aligned_cols=79 Identities=22% Similarity=0.342 Sum_probs=56.7
Q ss_pred CCCCCcceEEeecCCCCeeEEEEeeCCCCCCCceeEEEEEEEeCCCCCceEEE--EeeCceeEEEEcCCC--CCCEEEEE
Q psy241 551 PASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEE--SVVGDKMSTNVRGLE--PGRIYYFK 626 (753)
Q Consensus 551 p~~~P~~l~~~~~~~~~~~v~l~W~~p~~~~g~i~~Y~V~~~~~~~~~~~~~~--~~~~~~~~~~l~~L~--p~t~Y~~~ 626 (753)
...+|.|+++... .-...|+|+++... ..-..|.|+|+.... ..|... -.....+.+-|++.. ....|.+|
T Consensus 21 ~lp~P~nv~~~s~---nf~~iL~W~~~~~~-~~~~~ytVq~~~~~~-~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~r 95 (107)
T PF01108_consen 21 SLPAPQNVTVDSV---NFKHILRWDPGPGS-PPNVTYTVQYKKYGS-SSWKDVPGCQNITETSCDLTDETSDPSESYYAR 95 (107)
T ss_dssp SGSSCEEEEEEEE---TTEEEEEEEESTTS-SSTEEEEEEEEESST-SCEEEECCEEEESSSEEECTTCCTTTTSEEEEE
T ss_pred cCCCCCeeEEEEE---CCceEEEeCCCCCC-CCCeEEEEEEEecCC-cceeeccceecccccceeCcchhhcCcCCEEEE
Confidence 4567899999884 46789999995432 245779999993332 567665 344456788887755 67899999
Q ss_pred EEEEcCCC
Q psy241 627 IKARNSAG 634 (753)
Q Consensus 627 V~A~~~~G 634 (753)
|+|.....
T Consensus 96 V~A~~~~~ 103 (107)
T PF01108_consen 96 VRAEVGNQ 103 (107)
T ss_dssp EEEEETTE
T ss_pred EEEEeCCc
Confidence 99988543
No 34
>PF06583 Neogenin_C: Neogenin C-terminus; InterPro: IPR010560 This entry represents the C terminus of eukaryotic neogenin precursor proteins, which contains several potential phosphorylation sites []. Neogenin is a member of the N-CAM family of cell adhesion molecules (and therefore contains multiple copies of IPR007110 from INTERPRO and IPR003961 from INTERPRO) and is closely related to the DCC tumour suppressor gene product - these proteins may play an integral role in regulating differentiation programmes and/or cell migration events within many adult and embryonic tissues [].; GO: 0016021 integral to membrane; PDB: 3AU4_B.
Probab=97.02 E-value=0.00015 Score=70.14 Aligned_cols=25 Identities=76% Similarity=1.303 Sum_probs=0.0
Q ss_pred CCCCCCCcccccchhccccccccCC
Q psy241 683 TQINPPDLWIHHDQMELKAIEKSSQ 707 (753)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~l~~~s~ 707 (753)
|.++|+|+|||||+||+|+|+|++.
T Consensus 1 kdikPPDLWIHHdqmElK~meKs~~ 25 (319)
T PF06583_consen 1 KDIKPPDLWIHHDQMELKAMEKSPH 25 (319)
T ss_dssp -------------------------
T ss_pred CCCCCcccceehhhhcccccccCCC
Confidence 5789999999999999999999863
No 35
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=97.00 E-value=0.0019 Score=53.42 Aligned_cols=87 Identities=25% Similarity=0.325 Sum_probs=58.6
Q ss_pred CCCcceEEeeecCcEEEEEEeCCCCC---CC---------cceEEEEEEEEcCCc-ceEEEeecccEEEEcCCCCCcEEE
Q psy241 155 SPPLNVNIPVVGTSSLLVTWEKPTVT---NG---------EIKHYTLYYLEEDTS-VERHVVTPQLSYELTGLSHFTLYS 221 (753)
Q Consensus 155 ~~p~~l~~~~~~~~sv~lsW~~p~~~---~~---------~~~~Y~v~~~~~~~~-~~~~~~~~~~~~~i~~L~p~t~Y~ 221 (753)
+||. +.+ ....+.|.|.+.+|... ++ ....|.|.++..+.. ...........+.|.+|.|++.|.
T Consensus 4 gPP~-v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~YC 81 (106)
T PF09294_consen 4 GPPS-VNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSNEKKKEIETKNSSVTLSDLKPGTNYC 81 (106)
T ss_dssp -SSE-EEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTSCEEEEEESSSEEEEEES--TTSEEE
T ss_pred cCCE-EEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCccceEEEeecCCEEEEeCCCCCCCEE
Confidence 4555 777 56779999999988510 11 235799999988887 556667777778999999999999
Q ss_pred EEEEEEeCC--CCCCCCceeEEEe
Q psy241 222 IWVVAHNGN--GAGTTSQELSVQT 243 (753)
Q Consensus 222 ~~V~a~n~~--g~~~~s~~~~~~t 243 (753)
|+|.+.... ..|.+|.+..+.|
T Consensus 82 v~V~~~~~~~~~~s~~S~~~C~~t 105 (106)
T PF09294_consen 82 VSVQAFSPSQNKNSQPSEPQCITT 105 (106)
T ss_dssp EEEEEEECSSTEEEEEBSEEEEE-
T ss_pred EEEEEEeccCCCcCCCCCCEeEeC
Confidence 999994322 2355666555443
No 36
>KOG4367|consensus
Probab=96.91 E-value=0.0013 Score=64.37 Aligned_cols=93 Identities=26% Similarity=0.413 Sum_probs=74.4
Q ss_pred cCCCCcceeeec--CCCCeEEEEEeCCCCCCcceeEEEEEEeeCCCCccEEEEecCcccEEEeCCCCCCCeEEEEEEEEc
Q psy241 345 VPDIPASLKARP--GGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFN 422 (753)
Q Consensus 345 ~p~~p~~~~~~~--~~~~~v~l~W~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~v~V~a~~ 422 (753)
+|..|- +.... ...++++|+|+.|.......++|.++...+++..+. ....+..+.+++.+|..++.|..+|.++|
T Consensus 437 vpatpi-lq~~ec~t~nns~t~~wkqp~~~~~~~dg~~leld~g~~g~fr-evy~g~etmctvdglhfns~y~arvka~n 514 (699)
T KOG4367|consen 437 VPATPI-LQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFR-EVYVGKETMCTVDGLHFNSTYNARVKAFN 514 (699)
T ss_pred CCCCce-eehhhhhccCCceEEEeecCCCCCCCCcceEEEeecCCCCcee-EEEecCceeEEecceecchhHHHHHHHhh
Confidence 455553 33332 234899999998777777899999999988777777 66778889999999999999999999999
Q ss_pred CCCCCCCceeEEEecCC
Q psy241 423 EMGDGPQKYESLRTRNE 439 (753)
Q Consensus 423 ~~G~~~~s~~~~~t~~~ 439 (753)
..|.++.+......+..
T Consensus 515 ~tg~s~ys~tl~lqts~ 531 (699)
T KOG4367|consen 515 KTGVSPYSKTLVLQTSE 531 (699)
T ss_pred ccCCCcccceeEeeecc
Confidence 99999988766665543
No 37
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=96.65 E-value=3.4 Score=52.57 Aligned_cols=106 Identities=16% Similarity=0.068 Sum_probs=54.9
Q ss_pred cEEEEcCCCCCcEEEEEEEEEeCCCCCCCCceeEEEecCCCC-------CCCCCCcEEEEEeCCCCCCCCceeeEEEEEE
Q psy241 207 LSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKP-------SEPPANSITVRWQPPSRRGQNGIITGYKLRY 279 (753)
Q Consensus 207 ~~~~i~~L~p~t~Y~~~V~a~n~~g~~~~s~~~~~~t~~~~p-------~~~~~~si~l~W~~p~~~~~~~~~~~Y~v~~ 279 (753)
..+.+.-.++| .|.|++.|.|..|....+..+.+..+.... .......+.++-.. ..|....|+..+
T Consensus 1660 k~~~vt~~~pG-~Y~VtL~aSN~vG~~t~s~~i~v~epi~~L~L~aS~~~aavn~~V~fs~~l-----t~GS~vty~W~~ 1733 (2740)
T TIGR00864 1660 KGAKLNPLEAG-PCDIFLQAANLLGQATADCTIDFLEPAGNLMLQASDNPAAVNALINLSAEL-----AEGSGLQYRWFL 1733 (2740)
T ss_pred ceeEEecCCCc-eEEEEEEEeecccceeeEEEEEEEEEcCceEEeccCCcccCCCeEEEEEEe-----cCCCCcEEEEEE
Confidence 34555557776 699999999999986655444443321100 00111133333221 234455566665
Q ss_pred EEcCccCCCCcEEEecCceeEEEEcCCCCCCeEEEEEEEEeCCCCCCCC
Q psy241 280 KKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPAT 328 (753)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~i~V~a~~~~g~~~~s 328 (753)
.+.. .+. .......+.+ ..--.|.+.|.|.|..|....+
T Consensus 1734 gdG~--s~~-----~s~p~~tHtf---~~~G~y~VtVta~N~vss~~~s 1772 (2740)
T TIGR00864 1734 EEGD--DLE-----TSEPFMSHSF---PSAGLHLVTMKAFNELGSANAS 1772 (2740)
T ss_pred CCCC--Ccc-----cCCCceEEEc---cCCceEEEEEEEEcccccccee
Confidence 5432 110 1111112222 2233899999999988765443
No 38
>KOG4806|consensus
Probab=96.22 E-value=0.38 Score=46.67 Aligned_cols=218 Identities=17% Similarity=0.133 Sum_probs=109.4
Q ss_pred ecccEEEEcCCCCCcEEEEEEEEEeCCCC-CCCCceeEEEecCCCCCCCCC--C----cE---------EEEEeCCCCCC
Q psy241 204 TPQLSYELTGLSHFTLYSIWVVAHNGNGA-GTTSQELSVQTLSDKPSEPPA--N----SI---------TVRWQPPSRRG 267 (753)
Q Consensus 204 ~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~-~~~s~~~~~~t~~~~p~~~~~--~----si---------~l~W~~p~~~~ 267 (753)
.+...+++..|.|.+.|.|.|..+|..-. +..-.....+|...+-..+.. + .+ .++...|....
T Consensus 167 g~~n~~~v~~L~pdt~Y~~dvFvv~~~r~~sTay~~t~~~t~e~~kQk~~~Lk~g~l~qv~v~~~kG~kf~~f~~pq~~~ 246 (454)
T KOG4806|consen 167 GNKNIFTVSDLKPDTQYYFDVFVVNINRNMSTAYVGTFARTKEEAKQKTVELKDGKLTQVFVKGRKGAKFLSFKVPQTTR 246 (454)
T ss_pred CCccEEEhhhcCCCceEEEEEEEEecCCCcceeeeeeehhhhhhhcCCceeeccCcEEEEEecccccceEEEecCcchhh
Confidence 34557889999999999999999985432 211111233444333111111 1 22 23344443322
Q ss_pred CCceeeEEEEEEEEcCc-------cCCCCcEEEecCceeEEEEcCCCCCCeEEEEEEEEeCCCCCCCCcceeeeeeeccC
Q psy241 268 QNGIITGYKLRYKKKDV-------KKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDL 340 (753)
Q Consensus 268 ~~~~~~~Y~v~~~~~~~-------~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~i~V~a~~~~g~~~~s~~~~~~t~~~~~ 340 (753)
.++......|.-+...- ..+........+ -+.+.-..+.++..|.++++..|....- ..-.+...| +.
T Consensus 247 ~l~qp~mhllh~C~g~vrinl~R~rkel~kS~af~g-~~~~~Qfvv~~~~~~~~rf~~~ndde~~-~~v~V~aSt---~~ 321 (454)
T KOG4806|consen 247 SLGQPFMHLLHSCLGEVRINLLRQRKELGKSEAFYG-PTYIRQFVVLPGERYLMRFEPSNDDEAL-QKVMVAAST---EA 321 (454)
T ss_pred hcCCceeeeeecccccceeehhhchhhhcccccccC-ceeeeEEEecCCCceEEEEEecCCchhh-heeEeeeec---cc
Confidence 22222221111111100 000000111111 1222234667889999999988754322 111111111 12
Q ss_pred CCcccCCCCcceeeecCC--CCeEEEEEeCCCCCCcceeEEEEEEeeCCCCccE----------------E---------
Q psy241 341 GEFTVPDIPASLKARPGG--PSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFV----------------K--------- 393 (753)
Q Consensus 341 ~~~~~p~~p~~~~~~~~~--~~~v~l~W~~~~~~~~~i~~Y~v~~~~~~~~~~~----------------~--------- 393 (753)
.....|.-|.+-++..+. -.++++.|....+. -..|-|+.......+.. .
T Consensus 322 t~~~~P~LP~dTtVk~v~r~CSsAtIaW~gs~d~---~~kyCIy~~~~~~~e~~v~~~~N~C~g~~~~~~s~~v~c~y~h 398 (454)
T KOG4806|consen 322 TFRDLPELPQDTTVKNVRRRCSSATIAWNGSPDE---ELKYCIYVFNLPQRERSVVDFTNYCMGFVPKRVSQYVYCEYMH 398 (454)
T ss_pred ccCcCCCCCCCceEeeeccccchheeeeccCcch---heeEEEEEecccchhhhhhhhhccccCccccceeEEEeEEEec
Confidence 233678889888877665 36799999876554 33455543321111000 0
Q ss_pred ----EEecCcccEEEeCCCCCCCeEEEEEEEEcCCCCCCC
Q psy241 394 ----QILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQ 429 (753)
Q Consensus 394 ----~~~~~~~~~~~i~~L~p~~~Y~v~V~a~~~~G~~~~ 429 (753)
.....+...-+|.||.||..|.+-|.|.-..|..-+
T Consensus 399 s~~~q~~~~~i~teTI~gL~PgssYlldv~a~~~~g~~lp 438 (454)
T KOG4806|consen 399 SRERQQSPDNIETETILGLMPGSSYLLDVTANLSMGKPLP 438 (454)
T ss_pred ChhhhcchhhhhhhhhcccccCceEEEEEEEcccCCcccc
Confidence 001112334578899999999999999877765443
No 39
>KOG4228|consensus
Probab=96.21 E-value=0.038 Score=62.26 Aligned_cols=232 Identities=19% Similarity=0.184 Sum_probs=136.0
Q ss_pred eeccccCCCCCCcccEEEEEcCcEEEEEEcCCCCCCCcceEEEEEEEEcCCCCceEEeeccccceE-eeCCcCCCEEEEE
Q psy241 49 AINETLTLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAI-IQGLHPNTSYTFR 127 (753)
Q Consensus 49 ~~~~~~~~P~~P~~l~~~~~~~~si~lsW~~~~~~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~-i~~L~p~t~Y~~~ 127 (753)
.......-|..|....++.....++...|..... ....|.+.++....+ ..... ......+ ...+.+...|.+
T Consensus 17 ~~v~v~~~p~~~~~~~vt~~~~~~~~~~~~~~~t---~~~~y~v~~~~~~s~-~~~~~-~~~~~~~s~~~~~~~~~~~~- 90 (1087)
T KOG4228|consen 17 TYVRVNGGPPGPSTPNVTGSTATSWVQAELLGST---WPNYYQVIFKALSSG-YGYID-VDLTTRLSYPCLSPPSFLEL- 90 (1087)
T ss_pred EEEEecCCCCCCCCcccccccccceeehhhccCC---ChhhhheeeeEeccC-cceee-ccceeecccCCCCCcchhhh-
Confidence 3334444455566677777788899999988654 457788877765554 22221 1123345 667777777777
Q ss_pred EEEEeCCCCccCCCceEEEccCCCCCCCCCcceEEeeecCcEEEEEEeCCCCCCCcceEEEEEEEEcCCcceEEEeeccc
Q psy241 128 VVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTPQL 207 (753)
Q Consensus 128 V~a~~~~g~~~~s~~~~~~t~~~~~~P~~p~~l~~~~~~~~sv~lsW~~p~~~~~~~~~Y~v~~~~~~~~~~~~~~~~~~ 207 (753)
.+.|..|.+..+....-++... .....+....+.........+.|..+....+
T Consensus 91 -~evnt~~~a~~~~~~~~rt~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------------------------- 143 (1087)
T KOG4228|consen 91 -VEVNTIGRAPFQCPVAPRTGEQ-ATLSLQRDVQALMLSAATAHVNWRRFSATVG------------------------- 143 (1087)
T ss_pred -hhcccccccccccccCCccccc-cccccccchhhhhhhhhhhccCccccccccc-------------------------
Confidence 7777777666655443333222 1233344444444455566666766542221
Q ss_pred EEEEcCCCCCcEEEEEEEEEeCCCCCCCCceeEEEecCCCCCCCCCC----cEEEEEeCCCCCCCCceeeEEEEEEEEcC
Q psy241 208 SYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPAN----SITVRWQPPSRRGQNGIITGYKLRYKKKD 283 (753)
Q Consensus 208 ~~~i~~L~p~t~Y~~~V~a~n~~g~~~~s~~~~~~t~~~~p~~~~~~----si~l~W~~p~~~~~~~~~~~Y~v~~~~~~ 283 (753)
+.+....|.++.+..+.+.+....|..+... .++++|.++. ...+..|++.+...+
T Consensus 144 ----------------~~~~~~~~~~~~~t~i~i~~~~~~p~~~~~~~~~~~it~~w~~~~----~~~~~~ykl~~~~~d 203 (1087)
T KOG4228|consen 144 ----------------PLAIASPGLGPPSTYIQITTNANSPIQPGEEEEYTTITGSWSPPH----AVSLDTYKLLHLDPD 203 (1087)
T ss_pred ----------------ccccCCcccCCCCceEEEeccCCCCCCCCcceEEEEEEecCCCCC----cccchhhhhhhcCCc
Confidence 4444455555555556666666666655543 8999999876 456788888776664
Q ss_pred ccCCCCcEEEecCceeEEEEcCCCCCCeEEEEEEEEeCCCCCCCCcceeeeee
Q psy241 284 VKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETF 336 (753)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~i~V~a~~~~g~~~~s~~~~~~t~ 336 (753)
...+ ..+ ......+....++.+-..|.++..+....+.+.....+.+.+.
T Consensus 204 ~~~~--~~v-~~~~~~~~~t~~~~~~~~~~~~~ae~~~~~~~~~~a~i~~r~~ 253 (1087)
T KOG4228|consen 204 TGYE--ISV-TLTPPGSGGTGDLGPPSISRFKCAEPDRGPLGSSTAEIEARQL 253 (1087)
T ss_pred ccce--eee-eccCCCCCcccCCCCcccccccccCccccccCCCCcceEEEeh
Confidence 2221 222 2223334444567777788888887776666655555555543
No 40
>KOG4806|consensus
Probab=95.97 E-value=0.96 Score=44.05 Aligned_cols=128 Identities=18% Similarity=0.257 Sum_probs=76.4
Q ss_pred cCcccCceeEEEEEEEeCCCCCcceEEEEeeecC--CCCCCCCcceEEeecCCCCeeEEEEeeCCCCCCCceeEEEEEEE
Q psy241 515 NDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQE--AAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYS 592 (753)
Q Consensus 515 ~~L~p~t~Y~~~V~a~~~~g~s~~s~~~~~~t~~--~~p~~~P~~l~~~~~~~~~~~v~l~W~~p~~~~g~i~~Y~V~~~ 592 (753)
..+.++..|.++++..|... +.....+..+|.. ..-|.-|.+-++..+....+++++.|....+. -..|-|+.+
T Consensus 289 fvv~~~~~~~~rf~~~ndde-~~~~v~V~aSt~~t~~~~P~LP~dTtVk~v~r~CSsAtIaW~gs~d~---~~kyCIy~~ 364 (454)
T KOG4806|consen 289 FVVLPGERYLMRFEPSNDDE-ALQKVMVAASTEATFRDLPELPQDTTVKNVRRRCSSATIAWNGSPDE---ELKYCIYVF 364 (454)
T ss_pred EEecCCCceEEEEEecCCch-hhheeEeeeecccccCcCCCCCCCceEeeeccccchheeeeccCcch---heeEEEEEe
Confidence 45778889999999887653 2222333333321 11235677888887777899999999965432 356777765
Q ss_pred eCCCCCc------------------------eEEE----EeeCceeEEEEcCCCCCCEEEEEEEEEcCCCCCCCCCceEE
Q psy241 593 SDPNTDQ------------------------WIEE----SVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTW 644 (753)
Q Consensus 593 ~~~~~~~------------------------~~~~----~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~ 644 (753)
+....+. |... ....+-..-+|.||.||..|.+-|.|.-..|..-.-..+.+
T Consensus 365 ~~~~~e~~v~~~~N~C~g~~~~~~s~~v~c~y~hs~~~q~~~~~i~teTI~gL~PgssYlldv~a~~~~g~~lpyqa~~v 444 (454)
T KOG4806|consen 365 NLPQRERSVVDFTNYCMGFVPKRVSQYVYCEYMHSRERQQSPDNIETETILGLMPGSSYLLDVTANLSMGKPLPYQALTV 444 (454)
T ss_pred cccchhhhhhhhhccccCccccceeEEEeEEEecChhhhcchhhhhhhhhcccccCceEEEEEEEcccCCccccceeEEE
Confidence 4332100 0000 00112234578899999999999999876665322233444
Q ss_pred Ec
Q psy241 645 TT 646 (753)
Q Consensus 645 ~T 646 (753)
+|
T Consensus 445 ~t 446 (454)
T KOG4806|consen 445 HT 446 (454)
T ss_pred Ee
Confidence 44
No 41
>KOG4228|consensus
Probab=95.65 E-value=0.12 Score=58.45 Aligned_cols=212 Identities=16% Similarity=0.128 Sum_probs=120.8
Q ss_pred CCCCcceEEeeecCcEEEEEEeCCCCCCCcceEEEEEEEEcCCcceEEEeecccEEEEcCCCCCcEEEEEEEEEeCCCCC
Q psy241 154 PSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAG 233 (753)
Q Consensus 154 P~~p~~l~~~~~~~~sv~lsW~~p~~~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~~ 233 (753)
|..+....++.....++...|..+.. ....|.+.++....+...........+....+.+-..|++ .+.|..|.+
T Consensus 25 p~~~~~~~vt~~~~~~~~~~~~~~~t---~~~~y~v~~~~~~s~~~~~~~~~~~~~s~~~~~~~~~~~~--~evnt~~~a 99 (1087)
T KOG4228|consen 25 PPGPSTPNVTGSTATSWVQAELLGST---WPNYYQVIFKALSSGYGYIDVDLTTRLSYPCLSPPSFLEL--VEVNTIGRA 99 (1087)
T ss_pred CCCCCCcccccccccceeehhhccCC---ChhhhheeeeEeccCcceeeccceeecccCCCCCcchhhh--hhccccccc
Confidence 33444556666777889999988653 4567887777655552211122233456667788888887 777777777
Q ss_pred CCCceeEEEecCCCCCCCCCC---------cEEEEEeCCCCCCCCceeeEEEEEEEEcCccCCCCcEEEecCceeEEEEc
Q psy241 234 TTSQELSVQTLSDKPSEPPAN---------SITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVIT 304 (753)
Q Consensus 234 ~~s~~~~~~t~~~~p~~~~~~---------si~l~W~~p~~~~~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~ 304 (753)
..+.++.-++....+.-.... ...+.|..+. .
T Consensus 100 ~~~~~~~~rt~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~------------ 140 (1087)
T KOG4228|consen 100 PFQCPVAPRTGEQATLSLQRDVQALMLSAATAHVNWRRFS---------------------------A------------ 140 (1087)
T ss_pred ccccccCCccccccccccccchhhhhhhhhhhccCccccc---------------------------c------------
Confidence 766655555544433222111 1122221111 0
Q ss_pred CCCCCCeEEEEEEEEeCCCCCCCCcceeeeeeeccCCCcccCCCCcceeeecCCCCeEEEEEeCCCCCCcceeEEEEEEe
Q psy241 305 GLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWG 384 (753)
Q Consensus 305 ~L~p~t~Y~i~V~a~~~~g~~~~s~~~~~~t~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~~~~~~~~i~~Y~v~~~ 384 (753)
.+.+.+....|.++.+..+.+.+.. ..|..|. ...+...++++|.++... .+..|.+.+.
T Consensus 141 --------~~~~~~~~~~~~~~~~t~i~i~~~~------~~p~~~~----~~~~~~~it~~w~~~~~~--~~~~ykl~~~ 200 (1087)
T KOG4228|consen 141 --------TVGPLAIASPGLGPPSTYIQITTNA------NSPIQPG----EEEEYTTITGSWSPPHAV--SLDTYKLLHL 200 (1087)
T ss_pred --------cccccccCCcccCCCCceEEEeccC------CCCCCCC----cceEEEEEEecCCCCCcc--cchhhhhhhc
Confidence 0005556666666665555555543 2333333 455557899999877654 4777888766
Q ss_pred eCCCCccEEEEecCcccEEEeCCCCCCCeEEEEEEEEcCCCCCCCc
Q psy241 385 KGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQK 430 (753)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~v~V~a~~~~G~~~~s 430 (753)
..+..... ..+...........+.|...|.++..+....+.+...
T Consensus 201 ~~d~~~~~-~v~~~~~~~~~t~~~~~~~~~~~~~ae~~~~~~~~~~ 245 (1087)
T KOG4228|consen 201 DPDTGYEI-SVTLTPPGSGGTGDLGPPSISRFKCAEPDRGPLGSST 245 (1087)
T ss_pred CCccccee-eeeccCCCCCcccCCCCcccccccccCccccccCCCC
Confidence 55333332 3333344445556677777888888877766655443
No 42
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=95.29 E-value=0.11 Score=42.10 Aligned_cols=81 Identities=21% Similarity=0.276 Sum_probs=59.8
Q ss_pred cCCCCCCcccEEEEEcCcEEEEEEcCCCCCCCcceEEEEEEEEcCCCCceEEeecc--ccc-------eE-eeCCcCCCE
Q psy241 54 LTLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATA--RVE-------AI-IQGLHPNTS 123 (753)
Q Consensus 54 ~~~P~~P~~l~~~~~~~~si~lsW~~~~~~~~~~~~Y~v~~~~~~~~~~~~~~~~~--~~~-------~~-i~~L~p~t~ 123 (753)
..+|..|.++.+.......+++-|++....+.+ ..|.+.|...+ ..+....... ... .+ -.+..-.+.
T Consensus 5 ~~~p~~P~~~~C~S~~~etftC~W~~g~~~~l~-~~y~L~Y~~~~-~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~ 82 (104)
T PF09067_consen 5 QLPPEKPENLKCFSREMETFTCFWEPGSEGNLP-TNYTLFYKKEG-EEWKECPDYSTSGPNSTVRHICYFPKSDTSLFVP 82 (104)
T ss_dssp HHHCCCCEEEEEEBSSSS-EEEEEEEESSSTST-CEEEEEEEETT-SEEEEESESSTTETTEEEEEEEEE-CCGCSSSSE
T ss_pred ccCCCCCccCccCCCCCCcEEEEeeCCCCCCCC-CcEEEEEEeCC-CCCccCCCeEecCCCCceeEEEEcCCCCeEEEEE
Confidence 346899999999998889999999998765544 44999999887 4444443322 222 33 447889999
Q ss_pred EEEEEEEEeCCCC
Q psy241 124 YTFRVVAYNALGA 136 (753)
Q Consensus 124 Y~~~V~a~~~~g~ 136 (753)
|.++|.|.|..|.
T Consensus 83 y~i~V~a~~~~~~ 95 (104)
T PF09067_consen 83 YCIQVEATNALGS 95 (104)
T ss_dssp EEEEEEEEETTEE
T ss_pred EEEEEEeccCCCc
Confidence 9999999997764
No 43
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=94.89 E-value=1.5 Score=48.21 Aligned_cols=130 Identities=10% Similarity=0.080 Sum_probs=72.1
Q ss_pred EeccccceEEecCcccCceeEEEEEEEeCCCCCcceE-EEEeee-cCCCCCCCCcceEEeecCCCCeeEEEEeeCCCCCC
Q psy241 504 YINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSM-IVLNTT-QEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSAN 581 (753)
Q Consensus 504 ~~~~~~~~~~l~~L~p~t~Y~~~V~a~~~~g~s~~s~-~~~~~t-~~~~p~~~P~~l~~~~~~~~~~~v~l~W~~p~~~~ 581 (753)
.-......+.+.+|.+ ..|.++|+|.|..+...... ...+.. ...+|+..+..+.... ..-.+.|.|-.|.. .
T Consensus 654 a~rt~~~~~~~~gi~~-GqY~i~VrAiN~~g~~~~~a~s~~f~i~g~~~Ppp~~~t~~a~~---it~~~~l~v~dPt~-~ 728 (952)
T COG4733 654 APRTSAAGFDVEGIPA-GQYAIRVRAINVFEPNSPDATAYEFALNGKKVPPPKAMIYDAVI---ITLVIRLVVGDPTG-A 728 (952)
T ss_pred cccccccceeecCcCc-cceEEEEEEeeccCCCCCCcceeEEEecCCCCCCCcccccceEE---EEeeeeEEEecCCc-c
Confidence 3346778999999998 57999999999887543322 333332 2233332232222222 23567788887742 1
Q ss_pred CceeEEEEEEEeCCCCCceEEEEeeCceeEEEEcCCCCCCEEEEEEEEEcCCCCCCC
Q psy241 582 GQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPY 638 (753)
Q Consensus 582 g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~ 638 (753)
-++..=++++......+......-........=.+|++|..|.|++|+.|..|...+
T Consensus 729 ~d~~~sei~~s~~~d~~~~Ar~LG~~~~~~~~~~~i~~g~~~~F~~R~Vn~vG~~~~ 785 (952)
T COG4733 729 VDITSTEIRSAVIADGNFQARSLGNLNYPGLFSVGIQAGLTFWFRNRNVDLVGNNDK 785 (952)
T ss_pred eEEeeeeeeeeccccchhHHhhhhccccccccccCcCCCceEEEEeeeccccccccc
Confidence 133333444433222111000011111111112589999999999999999998433
No 44
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=94.09 E-value=0.54 Score=38.14 Aligned_cols=78 Identities=26% Similarity=0.287 Sum_probs=57.1
Q ss_pred CCCCCcceEEeeecCcEEEEEEeCCCCCCCcceEEEEEEEEcCCcceEEEee----cccE-----EEEc--CCCCCcEEE
Q psy241 153 VPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVT----PQLS-----YELT--GLSHFTLYS 221 (753)
Q Consensus 153 ~P~~p~~l~~~~~~~~sv~lsW~~p~~~~~~~~~Y~v~~~~~~~~~~~~~~~----~~~~-----~~i~--~L~p~t~Y~ 221 (753)
+|..|.++.+....-..+++.|++....+. ...|.+.|...+ ..+..-+. ...+ +.+. ...-.+.|.
T Consensus 7 ~p~~P~~~~C~S~~~etftC~W~~g~~~~l-~~~y~L~Y~~~~-~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~y~ 84 (104)
T PF09067_consen 7 PPEKPENLKCFSREMETFTCFWEPGSEGNL-PTNYTLFYKKEG-EEWKECPDYSTSGPNSTVRHICYFPKSDTSLFVPYC 84 (104)
T ss_dssp HCCCCEEEEEEBSSSS-EEEEEEEESSSTS-TCEEEEEEEETT-SEEEEESESSTTETTEEEEEEEEE-CCGCSSSSEEE
T ss_pred CCCCCccCccCCCCCCcEEEEeeCCCCCCC-CCcEEEEEEeCC-CCCccCCCeEecCCCCceeEEEEcCCCCeEEEEEEE
Confidence 578899999999999999999999875553 344999999876 33332221 2233 5555 778899999
Q ss_pred EEEEEEeCCCC
Q psy241 222 IWVVAHNGNGA 232 (753)
Q Consensus 222 ~~V~a~n~~g~ 232 (753)
|+|+|.|..|.
T Consensus 85 i~V~a~~~~~~ 95 (104)
T PF09067_consen 85 IQVEATNALGS 95 (104)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEeccCCCc
Confidence 99999998775
No 45
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=94.01 E-value=0.19 Score=37.06 Aligned_cols=43 Identities=26% Similarity=0.512 Sum_probs=26.8
Q ss_pred EEEeCCCCCceEEEEeeCceeEEEEcCCCCCCEEEEEEEEEcCCCC
Q psy241 590 LYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGS 635 (753)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~ 635 (753)
+|+..+-+++|...... ...+.+.+|.|| .|.|+|+|.+..|.
T Consensus 11 ~Y~l~g~d~~W~~~~~~--~~~~~~~~L~~G-~Y~l~V~a~~~~~~ 53 (66)
T PF07495_consen 11 RYRLEGFDDEWITLGSY--SNSISYTNLPPG-KYTLEVRAKDNNGK 53 (66)
T ss_dssp EEEEETTESSEEEESST--S-EEEEES--SE-EEEEEEEEEETTS-
T ss_pred EEEEECCCCeEEECCCC--cEEEEEEeCCCE-EEEEEEEEECCCCC
Confidence 34333333667543222 228999999999 59999999997776
No 46
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=93.87 E-value=15 Score=42.16 Aligned_cols=82 Identities=20% Similarity=0.293 Sum_probs=53.4
Q ss_pred ccCCCCcceeeecCCCCeEEEEEeCCCC--CCcceeEEEEEEeeCCCCcc---E-EEEec---------Cccc--EEEeC
Q psy241 344 TVPDIPASLKARPGGPSSIIVSWTPPAD--QSIMVRGFTLGWGKGVPDEF---V-KQILD---------VKQR--SDEIT 406 (753)
Q Consensus 344 ~~p~~p~~~~~~~~~~~~v~l~W~~~~~--~~~~i~~Y~v~~~~~~~~~~---~-~~~~~---------~~~~--~~~i~ 406 (753)
.+|+...+|++...+ ..|.|+|+.|.+ ..|...+|.|++...-.+.. . ...++ +... .+...
T Consensus 754 ~PP~rItDL~~~~~~-~~v~LsWTAPG~d~D~G~a~~y~ir~s~~~~~l~~~f~~a~~vn~~~~~P~~ags~e~~~f~~~ 832 (863)
T TIGR00868 754 FPPSKITDLEAGFQG-DNIILTWTAPGDVLDHGRADRYIIRISTSILDLRDDFNDATQVNTTDLIPKEANSKEVFVFKPE 832 (863)
T ss_pred CCCccceeeEEeecC-CEEEEEeeCCCccCCCCccceEEEEecCCHHHHHhhhccccccccCCcCCCCCCceeEEEEeCC
Confidence 366677888886655 669999999987 55889999999976322111 0 01111 1112 23333
Q ss_pred CC--CCCCeEEEEEEEEcCCCC
Q psy241 407 GL--EPNSDYVISLRAFNEMGD 426 (753)
Q Consensus 407 ~L--~p~~~Y~v~V~a~~~~G~ 426 (753)
+. +.++.|.|-|+|++..|.
T Consensus 833 ~~~~~~~~~~~~ai~a~d~~~~ 854 (863)
T TIGR00868 833 GIPIENGTDLFIAVQAIDKANL 854 (863)
T ss_pred cccccCCeEEEEEEEEEccccc
Confidence 42 357789999999999874
No 47
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=93.76 E-value=0.55 Score=51.42 Aligned_cols=122 Identities=11% Similarity=0.084 Sum_probs=68.1
Q ss_pred ccceE-eeCCcCCCEEEEEEEEEeCCCCccCCC-ceEEEccCCCCCCCCCcceEEeeecCcEEEEEEeCCCCCCCcceEE
Q psy241 110 RVEAI-IQGLHPNTSYTFRVVAYNALGAGLASS-ALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHY 187 (753)
Q Consensus 110 ~~~~~-i~~L~p~t~Y~~~V~a~~~~g~~~~s~-~~~~~t~~~~~~P~~p~~l~~~~~~~~sv~lsW~~p~~~~~~~~~Y 187 (753)
....+ +.+|-+| .|.++|+|.|..|...... ...+.-.....+|..+..+.+...+ -.+.+.|-.|. ..-.+..=
T Consensus 658 ~~~~~~~~gi~~G-qY~i~VrAiN~~g~~~~~a~s~~f~i~g~~~Ppp~~~t~~a~~it-~~~~l~v~dPt-~~~d~~~s 734 (952)
T COG4733 658 SAAGFDVEGIPAG-QYAIRVRAINVFEPNSPDATAYEFALNGKKVPPPKAMIYDAVIIT-LVIRLVVGDPT-GAVDITST 734 (952)
T ss_pred cccceeecCcCcc-ceEEEEEEeeccCCCCCCcceeEEEecCCCCCCCcccccceEEEE-eeeeEEEecCC-cceEEeee
Confidence 46788 9999885 8999999999988654433 3334333322233233333333322 45777887764 11122222
Q ss_pred EEEEEEcCCcce--EEEe-ecccEEEEcCCCCCcEEEEEEEEEeCCCCCC
Q psy241 188 TLYYLEEDTSVE--RHVV-TPQLSYELTGLSHFTLYSIWVVAHNGNGAGT 234 (753)
Q Consensus 188 ~v~~~~~~~~~~--~~~~-~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~~~ 234 (753)
++++........ ..+. ..-....-.+|++|..|.|+++++|..|...
T Consensus 735 ei~~s~~~d~~~~Ar~LG~~~~~~~~~~~i~~g~~~~F~~R~Vn~vG~~~ 784 (952)
T COG4733 735 EIRSAVIADGNFQARSLGNLNYPGLFSVGIQAGLTFWFRNRNVDLVGNND 784 (952)
T ss_pred eeeeeccccchhHHhhhhccccccccccCcCCCceEEEEeeecccccccc
Confidence 333322221111 0110 0011112258999999999999999998754
No 48
>PLN02533 probable purple acid phosphatase
Probab=92.22 E-value=1.8 Score=45.78 Aligned_cols=86 Identities=15% Similarity=0.335 Sum_probs=54.3
Q ss_pred CCCCCcceEEeecCCCCeeEEEEeeCCCCCCCceeEEEEEEEeCCCCCceEE----EE-------eeCceeEEEEcCCCC
Q psy241 551 PASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIE----ES-------VVGDKMSTNVRGLEP 619 (753)
Q Consensus 551 p~~~P~~l~~~~~~~~~~~v~l~W~~p~~~~g~i~~Y~V~~~~~~~~~~~~~----~~-------~~~~~~~~~l~~L~p 619 (753)
.+..|..+.+... +.+++.|+|.-..... =.|+|....+.-.... .. .++....+.|.+|+|
T Consensus 40 ~~~~P~qvhls~~--~~~~m~V~W~T~~~~~-----~~V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~p 112 (427)
T PLN02533 40 DPTHPDQVHISLV--GPDKMRISWITQDSIP-----PSVVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLKP 112 (427)
T ss_pred CCCCCceEEEEEc--CCCeEEEEEECCCCCC-----CEEEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCCC
Confidence 4456788888776 6789999999765322 2355654332210100 00 112234578999999
Q ss_pred CCEEEEEEEEEcCCCCCCCCCceEEEcCCC
Q psy241 620 GRIYYFKIKARNSAGSSPYSSTVTWTTASD 649 (753)
Q Consensus 620 ~t~Y~~~V~A~~~~G~g~~S~~~~~~T~~~ 649 (753)
+|.|.++|- ....|+...|+|.+.
T Consensus 113 ~T~Y~Yrvg------~~~~s~~~~F~T~p~ 136 (427)
T PLN02533 113 NTVYYYKCG------GPSSTQEFSFRTPPS 136 (427)
T ss_pred CCEEEEEEC------CCCCccceEEECCCC
Confidence 999999993 223477789999764
No 49
>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....
Probab=92.20 E-value=2.6 Score=34.04 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=52.1
Q ss_pred CCcccEEEEEcCcEEEEEEcCCCCCCCcceEEEEEEEEcCCCCceEEeecc-c---cceE-eeCCcC----CCEEEEEEE
Q psy241 59 APQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATA-R---VEAI-IQGLHP----NTSYTFRVV 129 (753)
Q Consensus 59 ~P~~l~~~~~~~~si~lsW~~~~~~~~~~~~Y~v~~~~~~~~~~~~~~~~~-~---~~~~-i~~L~p----~t~Y~~~V~ 129 (753)
+|+||.+...+...+.++|.+..... .-..|.++|+.............. . ...+ +..... ...|.|.|.
T Consensus 1 ~~~nlsC~~~~~~~m~CtW~~g~~~~-~~t~y~L~~~~~~~~~~~eC~~y~~~~~~~~gC~~~~~~~~~~~~~~~~v~V~ 79 (99)
T PF09240_consen 1 KPQNLSCFIYNLEYMNCTWEPGKEAP-PDTQYTLYYWYSPLEEEKECPHYSKDSGTRIGCQFPVSEIDSSEFSQYNVCVN 79 (99)
T ss_dssp S-EEEEEEEETTTEEEEEEECCTTCS-TTEEEEEEEEETTSSSEEEESEEEESTSSEEEEEEESCTT-TTTTSEEEEEEE
T ss_pred CCeeCEEEEECCEEEEEEECCCCCCC-CcccEEEEEEcCCCCccccCCCccccCCceeEEEecCCCccccccceEEEEEE
Confidence 47899999999999999998865433 247999999987644333322111 1 2344 555554 347999999
Q ss_pred EEeCCCCc
Q psy241 130 AYNALGAG 137 (753)
Q Consensus 130 a~~~~g~~ 137 (753)
+.+..|.-
T Consensus 80 ~ss~~~~i 87 (99)
T PF09240_consen 80 GSSSAGSI 87 (99)
T ss_dssp EEETTEEE
T ss_pred eccCCCcc
Confidence 88877643
No 50
>PLN02533 probable purple acid phosphatase
Probab=90.91 E-value=1.9 Score=45.67 Aligned_cols=82 Identities=20% Similarity=0.229 Sum_probs=51.2
Q ss_pred CCCCCcceEEeeecCcEEEEEEeCCCCCCCcceEEEEEEEEcCCcceE-------EEe-------ecccEEEEcCCCCCc
Q psy241 153 VPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVER-------HVV-------TPQLSYELTGLSHFT 218 (753)
Q Consensus 153 ~P~~p~~l~~~~~~~~sv~lsW~~p~~~~~~~~~Y~v~~~~~~~~~~~-------~~~-------~~~~~~~i~~L~p~t 218 (753)
.+..|+.+.+.-.+.+++.|+|....... + .|+|......... ... .-.....|.+|+|++
T Consensus 40 ~~~~P~qvhls~~~~~~m~V~W~T~~~~~-~----~V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~p~T 114 (427)
T PLN02533 40 DPTHPDQVHISLVGPDKMRISWITQDSIP-P----SVVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLKPNT 114 (427)
T ss_pred CCCCCceEEEEEcCCCeEEEEEECCCCCC-C----EEEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCCCCC
Confidence 45678888888778899999999865322 2 2455433221111 111 011346799999999
Q ss_pred EEEEEEEEEeCCCCCCCCceeEEEecC
Q psy241 219 LYSIWVVAHNGNGAGTTSQELSVQTLS 245 (753)
Q Consensus 219 ~Y~~~V~a~n~~g~~~~s~~~~~~t~~ 245 (753)
.|.++|- ....+....|+|.+
T Consensus 115 ~Y~Yrvg------~~~~s~~~~F~T~p 135 (427)
T PLN02533 115 VYYYKCG------GPSSTQEFSFRTPP 135 (427)
T ss_pred EEEEEEC------CCCCccceEEECCC
Confidence 9999983 11235557787754
No 51
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=90.03 E-value=42 Score=38.76 Aligned_cols=87 Identities=23% Similarity=0.314 Sum_probs=53.5
Q ss_pred CCCCCcceEEeecCCCCeeEEEEeeCCCC--CCCceeEEEEEEEeCCCC--CceEE-EE---------eeCceeEEE--E
Q psy241 551 PASAPRDLTVVSKEGDPSLVNLNWQPPKS--ANGQISGYTILYSSDPNT--DQWIE-ES---------VVGDKMSTN--V 614 (753)
Q Consensus 551 p~~~P~~l~~~~~~~~~~~v~l~W~~p~~--~~g~i~~Y~V~~~~~~~~--~~~~~-~~---------~~~~~~~~~--l 614 (753)
||....+|++.. ....|.|+|..|.+ ..|....|+|+|...-.+ ++... .. ..++...++ .
T Consensus 755 PP~rItDL~~~~---~~~~v~LsWTAPG~d~D~G~a~~y~ir~s~~~~~l~~~f~~a~~vn~~~~~P~~ags~e~~~f~~ 831 (863)
T TIGR00868 755 PPSKITDLEAGF---QGDNIILTWTAPGDVLDHGRADRYIIRISTSILDLRDDFNDATQVNTTDLIPKEANSKEVFVFKP 831 (863)
T ss_pred CCccceeeEEee---cCCEEEEEeeCCCccCCCCccceEEEEecCCHHHHHhhhccccccccCCcCCCCCCceeEEEEeC
Confidence 344445666643 55669999999975 778899999999653221 00000 01 112222333 3
Q ss_pred cCC--CCCCEEEEEEEEEcCCCC-CCCCC
Q psy241 615 RGL--EPGRIYYFKIKARNSAGS-SPYSS 640 (753)
Q Consensus 615 ~~L--~p~t~Y~~~V~A~~~~G~-g~~S~ 640 (753)
.+. ..++.|.|-|+|.+..|. |..|.
T Consensus 832 ~~~~~~~~~~~~~ai~a~d~~~~~s~~sn 860 (863)
T TIGR00868 832 EGIPIENGTDLFIAVQAIDKANLTSEVSN 860 (863)
T ss_pred CcccccCCeEEEEEEEEEccccccccccc
Confidence 342 257899999999999886 66554
No 52
>KOG1225|consensus
Probab=89.42 E-value=0.78 Score=48.71 Aligned_cols=155 Identities=21% Similarity=0.180 Sum_probs=97.4
Q ss_pred CceeEEEecCCCeEEEEEeCCCCCcccccCCCCccEEEEEEEeecCCCCCceEEeccccceEEecCcccCceeEEEEEEE
Q psy241 451 PMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVV 530 (753)
Q Consensus 451 p~~l~~~~~~~~sv~v~W~~p~~~~~~~~~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~ 530 (753)
|..+.....+..++.+.|... .....|...|......+......+......+.+..|+|+..|.++|+++
T Consensus 369 ~~~~~~~~cs~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~~v 438 (525)
T KOG1225|consen 369 PSLLLITECSPPSLCIAGVGR----------RRVTHCAGTYCPLGESGGDLQGRVPGDANSVDIQGLEPGDEYNCSVNTV 438 (525)
T ss_pred chhhcccccCCCceeeccccc----------cccccccccccccccCCCccceeeccceeeeeeeeecCCcceeeehhhh
Confidence 333444555677777888721 2334555555554332333355667888899999999999999999998
Q ss_pred eCCC-CCcceEEEEeeecCCCCCCCCcceEEeecCCCCeeEEEEeeCCCCCCCceeEEEEEEEeCCCCCceEEEEeeCce
Q psy241 531 RAKK-ESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDK 609 (753)
Q Consensus 531 ~~~g-~s~~s~~~~~~t~~~~p~~~P~~l~~~~~~~~~~~v~l~W~~p~~~~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~ 609 (753)
...- ........ ++. ...+..+.+... ..+++.+.|..|... ...+.+.+-...... -.........
T Consensus 439 ~~~~~~~~~~~~~--~~~----~~~~g~~~v~~~--~~~s~e~~g~~~s~~---~~~~~~~~~~~~~~~-~~~~~~~~~~ 506 (525)
T KOG1225|consen 439 AANIGSLPKDKSE--TTV----LCWNGGLCVDGE--TESSLEVGGPCPSSG---TCGWEVRCGPCGNDG-GVNAEPPPEC 506 (525)
T ss_pred hhhhccCCccccc--ceE----eecCCceeeeee--eeccccccCCCCCcc---ccceEEEeeecCccc-ccccCCCCCC
Confidence 5433 22222221 111 133556677665 889999999998653 567888883222211 1222333367
Q ss_pred eEEEEcCCCCCCEEEEEE
Q psy241 610 MSTNVRGLEPGRIYYFKI 627 (753)
Q Consensus 610 ~~~~l~~L~p~t~Y~~~V 627 (753)
+.+...+|.|++.|.+.+
T Consensus 507 ~~~~~~~l~~c~~~~~~~ 524 (525)
T KOG1225|consen 507 TSYDRTGLGPCTEYEVSV 524 (525)
T ss_pred CCCCccCcccccceeccc
Confidence 789999999999998765
No 53
>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....
Probab=88.86 E-value=11 Score=30.44 Aligned_cols=76 Identities=21% Similarity=0.339 Sum_probs=52.6
Q ss_pred CCcceEEeeecCcEEEEEEeCCCCCCCcceEEEEEEEEcCCcce---EEE-eec--ccEEEEcCCCC----CcEEEEEEE
Q psy241 156 PPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVE---RHV-VTP--QLSYELTGLSH----FTLYSIWVV 225 (753)
Q Consensus 156 ~p~~l~~~~~~~~sv~lsW~~p~~~~~~~~~Y~v~~~~~~~~~~---~~~-~~~--~~~~~i~~L~p----~t~Y~~~V~ 225 (753)
+|.+|++...+...+.++|.+..... .-..|.++|+....... ... ... ...+.+..... ...|.|.|.
T Consensus 1 ~~~nlsC~~~~~~~m~CtW~~g~~~~-~~t~y~L~~~~~~~~~~~eC~~y~~~~~~~~gC~~~~~~~~~~~~~~~~v~V~ 79 (99)
T PF09240_consen 1 KPQNLSCFIYNLEYMNCTWEPGKEAP-PDTQYTLYYWYSPLEEEKECPHYSKDSGTRIGCQFPVSEIDSSEFSQYNVCVN 79 (99)
T ss_dssp S-EEEEEEEETTTEEEEEEECCTTCS-TTEEEEEEEEETTSSSEEEESEEEESTSSEEEEEEESCTT-TTTTSEEEEEEE
T ss_pred CCeeCEEEEECCEEEEEEECCCCCCC-CcccEEEEEEcCCCCccccCCCccccCCceeEEEecCCCccccccceEEEEEE
Confidence 36799999888999999999865333 45689999998764432 122 222 35566665554 358999999
Q ss_pred EEeCCCC
Q psy241 226 AHNGNGA 232 (753)
Q Consensus 226 a~n~~g~ 232 (753)
+.+..|.
T Consensus 80 ~ss~~~~ 86 (99)
T PF09240_consen 80 GSSSAGS 86 (99)
T ss_dssp EEETTEE
T ss_pred eccCCCc
Confidence 9987775
No 54
>KOG1225|consensus
Probab=88.00 E-value=1.2 Score=47.36 Aligned_cols=143 Identities=21% Similarity=0.156 Sum_probs=96.9
Q ss_pred cEEEEEeCCCCCCCCceeeEEEEEEEEcCccCCCCcEEEecCceeEEEEcCCCCCCeEEEEEEEEeCCCCC-CCCcceee
Q psy241 255 SITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSG-PATDWFSA 333 (753)
Q Consensus 255 si~l~W~~p~~~~~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~i~V~a~~~~g~~-~~s~~~~~ 333 (753)
.+.+.|... .....|...+.......... ...+..+...+.+..|+++..|.++++++-..-.+ .... ..
T Consensus 381 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~--~~ 451 (525)
T KOG1225|consen 381 SLCIAGVGR------RRVTHCAGTYCPLGESGGDL-QGRVPGDANSVDIQGLEPGDEYNCSVNTVAANIGSLPKDK--SE 451 (525)
T ss_pred ceeeccccc------cccccccccccccccCCCcc-ceeeccceeeeeeeeecCCcceeeehhhhhhhhccCCccc--cc
Confidence 677777622 22455666665544333333 55688889999999999999999999998643322 2222 22
Q ss_pred eeeeccCCCcccCCCCcceeeecCCCCeEEEEEeCCCCCCcceeEEEEEEeeCCCCccEEEEecCcccEEEeCCCCCCCe
Q psy241 334 ETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSDEITGLEPNSD 413 (753)
Q Consensus 334 ~t~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~ 413 (753)
.+ .-..+..+.++....+++.+.|..|... ..++.+.|.....+..........-+.+...+|.|++.
T Consensus 452 ~~---------~~~~~g~~~v~~~~~~s~e~~g~~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~c~~ 519 (525)
T KOG1225|consen 452 TT---------VLCWNGGLCVDGETESSLEVGGPCPSSG---TCGWEVRCGPCGNDGGVNAEPPPECTSYDRTGLGPCTE 519 (525)
T ss_pred ce---------EeecCCceeeeeeeeccccccCCCCCcc---ccceEEEeeecCcccccccCCCCCCCCCCccCcccccc
Confidence 22 2346677888888889999999988775 67788888443333222233444667788899999999
Q ss_pred EEEEE
Q psy241 414 YVISL 418 (753)
Q Consensus 414 Y~v~V 418 (753)
|.+.+
T Consensus 520 ~~~~~ 524 (525)
T KOG1225|consen 520 YEVSV 524 (525)
T ss_pred eeccc
Confidence 98765
No 55
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=87.95 E-value=3.2 Score=30.34 Aligned_cols=38 Identities=21% Similarity=0.091 Sum_probs=25.4
Q ss_pred cceEEEeecccEEEEcCCCCCcEEEEEEEEEeCCCCCCC
Q psy241 197 SVERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTT 235 (753)
Q Consensus 197 ~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~~~~ 235 (753)
..|.........+.+.+|.|| .|.|.|+|.+..|....
T Consensus 19 ~~W~~~~~~~~~~~~~~L~~G-~Y~l~V~a~~~~~~~~~ 56 (66)
T PF07495_consen 19 DEWITLGSYSNSISYTNLPPG-KYTLEVRAKDNNGKWSS 56 (66)
T ss_dssp SSEEEESSTS-EEEEES--SE-EEEEEEEEEETTS-B-S
T ss_pred CeEEECCCCcEEEEEEeCCCE-EEEEEEEEECCCCCcCc
Confidence 445555544448999999999 69999999998887443
No 56
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=83.96 E-value=6.7 Score=30.77 Aligned_cols=76 Identities=24% Similarity=0.276 Sum_probs=45.7
Q ss_pred ccEEEEEcCcEEEEEEcCCCCCCC-cceEEEEEEEEcCCCCceEEeeccccceE-eeCCcCCCEEEEEEEEEeCCCCccC
Q psy241 62 SVSAIMVGPRSVALRWLPPTLPRG-EILVYCVLYKREGSERERAYNATARVEAI-IQGLHPNTSYTFRVVAYNALGAGLA 139 (753)
Q Consensus 62 ~l~~~~~~~~si~lsW~~~~~~~~-~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~-i~~L~p~t~Y~~~V~a~~~~g~~~~ 139 (753)
.|.+...+.-.+.+.|......-. ....|.+.-...+.. ....+ |.++.......|.|.|.|..|....
T Consensus 5 ~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~---------~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~ 75 (88)
T cd05735 5 EMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDE---------VISTLQILPTVREDSGFFSCHAINSYGEDRG 75 (88)
T ss_pred EEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCc---------EEEEEEECCCCcccCEEEEEEEEcCCCcceE
Confidence 356666666677899965331000 012344432211110 12356 8888889999999999999998776
Q ss_pred CCceEEE
Q psy241 140 SSALPVK 146 (753)
Q Consensus 140 s~~~~~~ 146 (753)
...+.+.
T Consensus 76 ~~~L~V~ 82 (88)
T cd05735 76 IIQLTVQ 82 (88)
T ss_pred EEEEEEe
Confidence 6655555
No 57
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=82.60 E-value=3 Score=33.61 Aligned_cols=42 Identities=24% Similarity=0.327 Sum_probs=32.7
Q ss_pred cceE-eeCCcCCCEEEEEEEEEeCCCCccCCCceEEEccCCCCCCCCC
Q psy241 111 VEAI-IQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPP 157 (753)
Q Consensus 111 ~~~~-i~~L~p~t~Y~~~V~a~~~~g~~~~s~~~~~~t~~~~~~P~~p 157 (753)
...+ |.+........|.|.|.|..|....+..+.+.- .|.+|
T Consensus 55 ~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~-----~P~pP 97 (98)
T cd05762 55 SSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVD-----KPDPP 97 (98)
T ss_pred eeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEec-----CCCCC
Confidence 3456 999999999999999999999877766666653 45555
No 58
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=80.09 E-value=1.2 Score=47.79 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=0.0
Q ss_pred CCCCCCeEEEEEEEEeCCCCC
Q psy241 305 GLNKSTTYQIKLWAMNVNGSG 325 (753)
Q Consensus 305 ~L~p~t~Y~i~V~a~~~~g~~ 325 (753)
-|++|..|.|++.+.+..+..
T Consensus 268 ~l~~g~~Y~~~l~v~~~~~~~ 288 (440)
T PF02010_consen 268 VLEPGSTYTFRLTVTDSSGSS 288 (440)
T ss_dssp ---------------------
T ss_pred ccccccccccccccccccccc
Confidence 589999999999999876654
No 59
>KOG1948|consensus
Probab=79.63 E-value=60 Score=36.64 Aligned_cols=113 Identities=20% Similarity=0.173 Sum_probs=54.2
Q ss_pred ccceE-eeCCcCCCEEEEEEEEEeCCCCccCCC--ceEEEccCCCCCCCCCcceEEee-ecCcEEEEEEeCCCCCCCcce
Q psy241 110 RVEAI-IQGLHPNTSYTFRVVAYNALGAGLASS--ALPVKTEPEDHVPSPPLNVNIPV-VGTSSLLVTWEKPTVTNGEIK 185 (753)
Q Consensus 110 ~~~~~-i~~L~p~t~Y~~~V~a~~~~g~~~~s~--~~~~~t~~~~~~P~~p~~l~~~~-~~~~sv~lsW~~p~~~~~~~~ 185 (753)
.+-.| |.||.|+..|.++|.+.-....-..+. ...+....+ -..+|.+.. ....+..|+-......|....
T Consensus 944 enG~yRiRGL~Pdc~Y~V~vk~~~~n~~iers~P~s~tv~vgne-----Dv~glnf~af~q~kttdit~~V~~~~ne~l~ 1018 (1165)
T KOG1948|consen 944 ENGTYRIRGLLPDCEYQVHVKSYADNSPIERSFPRSFTVSVGNE-----DVKGLNFMAFIQAKTTDITVEVGMDTNEELQ 1018 (1165)
T ss_pred cCCcEEEeccCCCceEEEEEeeccCCCcccccCCceEEEEeccc-----ccCCceEEEEeccceEEEEEEEccccccccc
Confidence 55688 999999999999998884322211111 112221111 122222221 122333333333222233333
Q ss_pred EE-EEEEEEcCC-cceEEEeecccEEEEc-CCCCCcEEEEEEEEE
Q psy241 186 HY-TLYYLEEDT-SVERHVVTPQLSYELT-GLSHFTLYSIWVVAH 227 (753)
Q Consensus 186 ~Y-~v~~~~~~~-~~~~~~~~~~~~~~i~-~L~p~t~Y~~~V~a~ 227 (753)
.- .+.|+..+. .....+......+-+. -+.+|.+|-+++.+.
T Consensus 1019 sl~vv~yKs~nddspv~sv~~gql~~ffp~l~~dg~~yvV~l~St 1063 (1165)
T KOG1948|consen 1019 SLRVVIYKSNNDDSPVASVVAGQLLHFFPNLPRDGVEYVVRLEST 1063 (1165)
T ss_pred ceEEEEEecCCCCCcceEEeccceeeeccccCCCCceEEEEEecc
Confidence 33 344443333 2333443333333333 457888999888765
No 60
>PF14292 SusE: SusE outer membrane protein
Probab=79.60 E-value=31 Score=29.06 Aligned_cols=65 Identities=18% Similarity=0.328 Sum_probs=40.8
Q ss_pred CCeeEEEEeeCCCCCCC-ceeEEEEEEEeCCCC-CceEEEEeeC-ceeEEEEc-----------CCCCCCEEEEEEEEE
Q psy241 566 DPSLVNLNWQPPKSANG-QISGYTILYSSDPNT-DQWIEESVVG-DKMSTNVR-----------GLEPGRIYYFKIKAR 630 (753)
Q Consensus 566 ~~~~v~l~W~~p~~~~g-~i~~Y~V~~~~~~~~-~~~~~~~~~~-~~~~~~l~-----------~L~p~t~Y~~~V~A~ 630 (753)
....++++|+++..... ....|.|++...++. .......... ..+++.++ |+.||....+.+|..
T Consensus 43 ~~~a~tftW~~~~~~~~~a~v~Y~lq~~~~~~~F~~~~~~~~~~~~~~s~~~t~~eLN~~l~~~g~~~~~~~~l~~rV~ 121 (122)
T PF14292_consen 43 SDNAVTFTWTAADYGGPDAPVTYTLQFDKKGNDFSSPVEIVTTDNGSTSVSITVKELNSILLKLGLEPGEAGTLYWRVK 121 (122)
T ss_pred CCceEEEEEECCccCCCCCceEEEEEEeccCCCccCcEEEEeecCcceeEEecHHHHHHHHHHcCCCCCceEEEEEEEE
Confidence 55699999999875433 456799999775533 2222222121 13455554 688998888887754
No 61
>PF13882 Bravo_FIGEY: Bravo-like intracellular region
Probab=78.35 E-value=1.9 Score=33.62 Aligned_cols=24 Identities=17% Similarity=-0.006 Sum_probs=20.6
Q ss_pred cCCcccCCCCCCCCCCcccccchh
Q psy241 674 TGGKQQAPATQINPPDLWIHHDQM 697 (753)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~ 697 (753)
|+|||.|++|+..+.++..+.+++
T Consensus 4 kGGKY~V~eKE~~~~~~~~~~~kd 27 (90)
T PF13882_consen 4 KGGKYSVKEKEDAHGDPEDQPMKD 27 (90)
T ss_pred CCCCCCCccccccCCCCccccccC
Confidence 689999999999999999876544
No 62
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=77.59 E-value=51 Score=29.29 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=24.8
Q ss_pred eCCCCCCCeEEEEEEEEcCCCCCCCceeEEEe
Q psy241 405 ITGLEPNSDYVISLRAFNEMGDGPQKYESLRT 436 (753)
Q Consensus 405 i~~L~p~~~Y~v~V~a~~~~G~~~~s~~~~~t 436 (753)
+..|+.+..|.+.|.|.+.+|........+.-
T Consensus 116 fpsle~~~~YtLtV~a~D~aGN~~~~si~F~y 147 (158)
T PF13750_consen 116 FPSLEADDSYTLTVSATDKAGNQSTKSISFSY 147 (158)
T ss_pred cCCcCCCCeEEEEEEEEecCCCEEEEEEEEEE
Confidence 45788999999999999999976655444443
No 63
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=71.51 E-value=8 Score=30.33 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=25.4
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCCCCccCCCc
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNALGAGLASSA 142 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~g~~~~s~~ 142 (753)
..+ |.++.+.+...|+|.|.|..|....+..
T Consensus 53 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 84 (88)
T cd05851 53 AVLKIFNIQPEDEGTYECEAENIKGKDKHQAR 84 (88)
T ss_pred CEEEECcCChhhCEEEEEEEEcCCCceEEEEE
Confidence 356 9999999999999999999997655443
No 64
>PF14292 SusE: SusE outer membrane protein
Probab=70.81 E-value=63 Score=27.19 Aligned_cols=72 Identities=21% Similarity=0.209 Sum_probs=43.9
Q ss_pred cceeeecCCCCeEEEEEeCCCCCCc-ceeEEEEEEeeCCCCccEEEEec-Cc--ccEEEeC-----------CCCCCCeE
Q psy241 350 ASLKARPGGPSSIIVSWTPPADQSI-MVRGFTLGWGKGVPDEFVKQILD-VK--QRSDEIT-----------GLEPNSDY 414 (753)
Q Consensus 350 ~~~~~~~~~~~~v~l~W~~~~~~~~-~i~~Y~v~~~~~~~~~~~~~~~~-~~--~~~~~i~-----------~L~p~~~Y 414 (753)
..+.+.....+.++++|+++..... ....|.|+....+.+......+. .. ..+..+. ++.|+...
T Consensus 35 ~~i~L~~~~~~a~tftW~~~~~~~~~a~v~Y~lq~~~~~~~F~~~~~~~~~~~~~~s~~~t~~eLN~~l~~~g~~~~~~~ 114 (122)
T PF14292_consen 35 SSIVLDEASDNAVTFTWTAADYGGPDAPVTYTLQFDKKGNDFSSPVEIVTTDNGSTSVSITVKELNSILLKLGLEPGEAG 114 (122)
T ss_pred ceEEecccCCceEEEEEECCccCCCCCceEEEEEEeccCCCccCcEEEEeecCcceeEEecHHHHHHHHHHcCCCCCceE
Confidence 3455555555789999999876544 45689999887443221112221 11 3444442 67888888
Q ss_pred EEEEEEE
Q psy241 415 VISLRAF 421 (753)
Q Consensus 415 ~v~V~a~ 421 (753)
.+.+|..
T Consensus 115 ~l~~rV~ 121 (122)
T PF14292_consen 115 TLYWRVK 121 (122)
T ss_pred EEEEEEE
Confidence 8877754
No 65
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=66.41 E-value=96 Score=27.59 Aligned_cols=34 Identities=18% Similarity=0.393 Sum_probs=25.4
Q ss_pred EcCCCCCCEEEEEEEEEcCCCCCCCCCceEEEcCC
Q psy241 614 VRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTAS 648 (753)
Q Consensus 614 l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~T~~ 648 (753)
+..|..+..|++.|.|.+.+|.- -...+.|.=.|
T Consensus 116 fpsle~~~~YtLtV~a~D~aGN~-~~~si~F~y~P 149 (158)
T PF13750_consen 116 FPSLEADDSYTLTVSATDKAGNQ-STKSISFSYMP 149 (158)
T ss_pred cCCcCCCCeEEEEEEEEecCCCE-EEEEEEEEEeC
Confidence 45788999999999999999982 23345665543
No 66
>KOG1948|consensus
Probab=64.59 E-value=2.6e+02 Score=31.99 Aligned_cols=80 Identities=14% Similarity=0.222 Sum_probs=43.2
Q ss_pred cCCCCceEEeeccccceE-eeCCcCCCEEEEEEEEEeCCC-CccCCCceEEEccCCCCCCCCCcceEEeeecCcEEEEEE
Q psy241 97 EGSERERAYNATARVEAI-IQGLHPNTSYTFRVVAYNALG-AGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTW 174 (753)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~-i~~L~p~t~Y~~~V~a~~~~g-~~~~s~~~~~~t~~~~~~P~~p~~l~~~~~~~~sv~lsW 174 (753)
.|......+....+...| +.++.|| .|.+++.- ++.+ +...+..+.+.+.....++-.=....+.-.....+.+.|
T Consensus 508 ~Gq~~~~~vk~td~~~~ftF~nilPG-kY~~~i~d-~~~wCwe~ss~~lnV~~~d~~aieFvqkGy~~~iisSH~a~~e~ 585 (1165)
T KOG1948|consen 508 AGQTLVRSVKGTDESSVFTFENILPG-KYSARIDD-NGRWCWEKSSMTLNVEQSDTQAIEFVQKGYAAQIISSHPAEIEW 585 (1165)
T ss_pred cCCcceeeEEEEeeccEEEeeccCCc-ceEEEecc-CCCceeecceEEEEeecccccccceeeccEEEEEEecCceeeEE
Confidence 344444444444455678 9999999 57777751 2222 222233334444332212211223445566778899999
Q ss_pred eCCC
Q psy241 175 EKPT 178 (753)
Q Consensus 175 ~~p~ 178 (753)
..+.
T Consensus 586 ~h~d 589 (1165)
T KOG1948|consen 586 SHAD 589 (1165)
T ss_pred ecCC
Confidence 9865
No 67
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=64.34 E-value=41 Score=26.10 Aligned_cols=30 Identities=17% Similarity=0.179 Sum_probs=24.8
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCCCCccCCC
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNALGAGLASS 141 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~g~~~~s~ 141 (753)
..+ |.+++..+...|+|.|.|..|....+.
T Consensus 53 ~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~ 83 (88)
T cd04968 53 AVLKIPNIQFEDEGTYECEAENIKGKDTHQG 83 (88)
T ss_pred CEEEECCCCcccCEEEEEEEEECCCcEEEEE
Confidence 466 999999999999999999999754433
No 68
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=64.05 E-value=41 Score=23.41 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=20.7
Q ss_pred EEEEcCCCCCCEEEEEEEEEcCCCCCCCC
Q psy241 611 STNVRGLEPGRIYYFKIKARNSAGSSPYS 639 (753)
Q Consensus 611 ~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S 639 (753)
++.+..+ .+-.|.|+|+|.+.+|.....
T Consensus 15 s~t~~~~-~dG~y~itv~a~D~AGN~s~~ 42 (54)
T PF13754_consen 15 SFTVPAL-ADGTYTITVTATDAAGNTSTS 42 (54)
T ss_pred EEeCCCC-CCccEEEEEEEEeCCCCCCCc
Confidence 4556666 456799999999999984333
No 69
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=63.38 E-value=69 Score=24.93 Aligned_cols=80 Identities=18% Similarity=0.149 Sum_probs=44.2
Q ss_pred ceEEeeecCcEEEEEEeCCCCCC-CcceEEEEEEEEcCCcceEEEeecccEEEEcCCCCCcEEEEEEEEEeCCCCCCCCc
Q psy241 159 NVNIPVVGTSSLLVTWEKPTVTN-GEIKHYTLYYLEEDTSVERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQ 237 (753)
Q Consensus 159 ~l~~~~~~~~sv~lsW~~p~~~~-~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~~~~s~ 237 (753)
.|.|...+.-.+.+.|......- .....|.+.....+. .....+.|.++.....=.+.+.|.|..|......
T Consensus 5 ~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~-------~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~ 77 (88)
T cd05735 5 EMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGD-------EVISTLQILPTVREDSGFFSCHAINSYGEDRGII 77 (88)
T ss_pred EEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCC-------cEEEEEEECCCCcccCEEEEEEEEcCCCcceEEE
Confidence 34555555556788887632100 011234444321111 0124577777877777778899999999865444
Q ss_pred eeEEEecC
Q psy241 238 ELSVQTLS 245 (753)
Q Consensus 238 ~~~~~t~~ 245 (753)
.+.+...+
T Consensus 78 ~L~V~~~P 85 (88)
T cd05735 78 QLTVQEPP 85 (88)
T ss_pred EEEEeCCC
Confidence 44444433
No 70
>KOG1378|consensus
Probab=61.63 E-value=92 Score=32.77 Aligned_cols=87 Identities=16% Similarity=0.309 Sum_probs=50.2
Q ss_pred CCcceEEeecCCCCeeEEEEeeCCCCCCCceeEEEEEEEeCCC---CCceEEE--------EeeCceeEEEEcCCCCCCE
Q psy241 554 APRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPN---TDQWIEE--------SVVGDKMSTNVRGLEPGRI 622 (753)
Q Consensus 554 ~P~~l~~~~~~~~~~~v~l~W~~p~~~~g~i~~Y~V~~~~~~~---~~~~~~~--------~~~~~~~~~~l~~L~p~t~ 622 (753)
.|..+.+.... ..+.+.++|.-..... .+..|-..-...+. ....... ...+-...+++.+|++++.
T Consensus 44 ~peQvhlS~~~-~~~~m~VswvT~~~~~-~~V~Yg~~~~~~~~~~~~~~~~~~~~~y~~~~~~sg~ih~~~~~~L~~~t~ 121 (452)
T KOG1378|consen 44 SPEQVHLSFTD-NLNEMRVSWVTGDGEE-NVVRYGEVKDKLDNSAARGMTEAWTDGYANGWRDSGYIHDAVMKNLEPNTR 121 (452)
T ss_pred CCCeEEEeccC-CCCcEEEEEeCCCCCC-ceEEEeecCCCccccccccceEEEecccccccceeeeEeeeeecCCCCCce
Confidence 45666666653 3338999999775432 23333322111000 0001000 1222234577899999999
Q ss_pred EEEEEEEEcCCCC-CCCCCceEEEcCC
Q psy241 623 YYFKIKARNSAGS-SPYSSTVTWTTAS 648 (753)
Q Consensus 623 Y~~~V~A~~~~G~-g~~S~~~~~~T~~ 648 (753)
|.++| |. +.||....|+|.+
T Consensus 122 YyY~~------Gs~~~wS~~f~F~t~p 142 (452)
T KOG1378|consen 122 YYYQV------GSDLKWSEIFSFKTPP 142 (452)
T ss_pred EEEEe------CCCCCcccceEeECCC
Confidence 99998 43 3389999999988
No 71
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=58.71 E-value=20 Score=26.72 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=24.0
Q ss_pred cceE-eeCCcCCCEEEEEEEEEeCCCCccC
Q psy241 111 VEAI-IQGLHPNTSYTFRVVAYNALGAGLA 139 (753)
Q Consensus 111 ~~~~-i~~L~p~t~Y~~~V~a~~~~g~~~~ 139 (753)
...+ |.++.+.....|+|.|.|..|....
T Consensus 39 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 68 (74)
T cd05748 39 STSLVIKNAERSDSGKYTLTLKNPAGEKSA 68 (74)
T ss_pred eEEEEECCCCcCcCEEEEEEEECCCccEEE
Confidence 3456 9999999999999999999886443
No 72
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=58.17 E-value=19 Score=27.11 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=24.6
Q ss_pred eE-eeCCcCCCEEEEEEEEEeCCCCccCCC
Q psy241 113 AI-IQGLHPNTSYTFRVVAYNALGAGLASS 141 (753)
Q Consensus 113 ~~-i~~L~p~t~Y~~~V~a~~~~g~~~~s~ 141 (753)
.+ |.++++.+...|+|.|.|..|....+.
T Consensus 42 ~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a 71 (75)
T cd05893 42 CLLIQGATKEDAGWYTVSAKNEAGIVSCTA 71 (75)
T ss_pred EEEECCCCHHHCEEEEEEEEcCCCEEEEEE
Confidence 46 999999999999999999999765443
No 73
>PF08329 ChitinaseA_N: Chitinase A, N-terminal domain; InterPro: IPR013540 This domain is found in a number of bacterial chitinases and similar viral proteins. It is organised into a fibronectin III module domain-like fold, comprising only beta strands. Its function is not known, but it may be involved in interaction with the enzyme substrate, chitin [, ]. It is separated by a hinge region from the catalytic domain (IPR001223 from INTERPRO); this hinge region is probably mobile, allowing the N-terminal domain to have different relative positions in solution []. ; GO: 0004568 chitinase activity; PDB: 2WLY_A 1EDQ_A 2WM0_A 1X6N_A 1NH6_A 2WK2_A 1EHN_A 2WLZ_A 1EIB_A 1FFR_A ....
Probab=57.75 E-value=94 Score=26.54 Aligned_cols=71 Identities=20% Similarity=0.267 Sum_probs=39.4
Q ss_pred CCeeEEEEeeCCCCCCCceeEEEEEEEeCCCCCceEEEEeeC-ceeEEEEcCCCCCCEEEEEEEEEcCCCCCCCCCceEE
Q psy241 566 DPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVG-DKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTW 644 (753)
Q Consensus 566 ~~~~v~l~W~~p~~~~g~i~~Y~V~~~~~~~~~~~~~~~~~~-~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~ 644 (753)
..-.|.|+|.--...+| ..|.|++ ++ ..+..-.. .....++..-+ +.+|.++|+.+|..|.+. |.++.+
T Consensus 36 ~~v~V~VtwN~WsG~~G--d~~kly~--dG----~~V~tG~~~~~~~a~~~~~~-gG~y~~~VeLCN~~GCS~-S~~~~V 105 (133)
T PF08329_consen 36 DQVDVSVTWNVWSGTNG--DTAKLYF--DG----VLVWTGPSPQQKSATFTVTK-GGRYQMQVELCNADGCST-SAPVEV 105 (133)
T ss_dssp SSEEEEEEEE-SSS-----SEEEEEE--TT----EEEEEEE--SEEEEEEEE-S--EEEEEEEEEEETTEEEE----EEE
T ss_pred CceEEEEEEEEecCCCC--CEEEEEE--CC----EEEEeCCCccCceEEEEecC-CCEEEEEEEEECCCCccc-CCCEEE
Confidence 67899999997644444 6688775 22 11112222 24445665555 457999999999999754 545555
Q ss_pred Ec
Q psy241 645 TT 646 (753)
Q Consensus 645 ~T 646 (753)
..
T Consensus 106 ~V 107 (133)
T PF08329_consen 106 VV 107 (133)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 74
>COG3979 Uncharacterized protein contain chitin-binding domain type 3 [General function prediction only]
Probab=56.47 E-value=26 Score=31.94 Aligned_cols=85 Identities=24% Similarity=0.421 Sum_probs=55.7
Q ss_pred CCcceEEeecCCCCeeEEEEeeCCCCCCCceeEEEEEEEeCCCCCceEEEEeeCceeEEEEcCCCCCCEEEEEEEEEcCC
Q psy241 554 APRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSA 633 (753)
Q Consensus 554 ~P~~l~~~~~~~~~~~v~l~W~~p~~~~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~ 633 (753)
.+..+..... ...++.+.|+... .+-.+..|-+.+. |............++.+|.+.++|.|.+-+....
T Consensus 7 a~~~~~~~~~--~~~s~~~~~~s~~-~~~~~~~~p~~~~-------~d~~~~~t~~~~~~~~g~~~et~y~~~~~a~~t~ 76 (181)
T COG3979 7 APKSLMLTNV--TTTSASLAASSSS-DNKASDTYPYVYA-------WDPKTVYTTGTVVTVEGLAPETEYWTLVEAPDTS 76 (181)
T ss_pred Cccceeecch--hhhhhhhcccccc-ccccccCCCcccc-------cCccceecccceEEecCcceeeEEEEeeeccCCC
Confidence 3444555544 7788999999762 2334566661111 2222444455689999999999999999999877
Q ss_pred CC-CCCCCceEEEcCC
Q psy241 634 GS-SPYSSTVTWTTAS 648 (753)
Q Consensus 634 G~-g~~S~~~~~~T~~ 648 (753)
|. +.++..+...+..
T Consensus 77 g~~s~~~~~~~~~~~~ 92 (181)
T COG3979 77 GNWSAWSRLLTVSTSG 92 (181)
T ss_pred CccccceeeeeeccCc
Confidence 76 6666655555554
No 75
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=55.68 E-value=19 Score=26.41 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=23.4
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCCCCccC
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNALGAGLA 139 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~g~~~~ 139 (753)
..+ |.++++.+...|.|.|.|..|....
T Consensus 35 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 63 (69)
T cd05725 35 KSLKIRNVTAGDEGSYTCEAENMVGKIEA 63 (69)
T ss_pred CEEEECcCChhHCEEEEEEEEcCCCcEEE
Confidence 356 9999999999999999999886543
No 76
>KOG4194|consensus
Probab=55.39 E-value=1.3e+02 Score=32.75 Aligned_cols=116 Identities=9% Similarity=0.082 Sum_probs=70.9
Q ss_pred eeCCcCCCEEEEEEEEEeCCCCccCCCceEEEccCCCCCCCCCcceEEeeecCcEEEEEEeCCCCCCCcceEEEEEEEEc
Q psy241 115 IQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEE 194 (753)
Q Consensus 115 i~~L~p~t~Y~~~V~a~~~~g~~~~s~~~~~~t~~~~~~P~~p~~l~~~~~~~~sv~lsW~~p~~~~~~~~~Y~v~~~~~ 194 (753)
+.+..-..+..|+|.+.|..|.. .+....++....+..-..|.++.+.. ...+++....-.++. =+|.|+..
T Consensus 578 L~nVt~td~grYQCVvtN~FGSt-ysqk~KltV~~~PsFtktP~dltl~t--g~mArl~CaAtG~P~-----PeIawqkd 649 (873)
T KOG4194|consen 578 LDNVTFTDEGRYQCVVTNHFGST-YSQKAKLTVNQAPSFTKTPEDLTLRT--GQMARLECAATGHPR-----PEIAWQKD 649 (873)
T ss_pred eeeeecccCceEEEEEecccCcc-hhheeEEEeeccCccccCcccceeec--ccceeeeeeccCCCC-----cceeehhc
Confidence 88888888999999999999853 33434444333222334566766532 233444443321111 23444444
Q ss_pred CCc-------ceEEEeecccEEEEcCCCCCcEEEEEEEEEeCCCCCCCCce
Q psy241 195 DTS-------VERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQE 238 (753)
Q Consensus 195 ~~~-------~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~~~~s~~ 238 (753)
++. ....+......+-|.+.++...--+.+.|.|..|.-..+..
T Consensus 650 ggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAt 700 (873)
T KOG4194|consen 650 GGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANAT 700 (873)
T ss_pred CCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceE
Confidence 433 12455566777889999999888889999999987544444
No 77
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=55.35 E-value=44 Score=26.79 Aligned_cols=43 Identities=16% Similarity=0.081 Sum_probs=30.6
Q ss_pred ccEEEEcCCCCCcEEEEEEEEEeCCCCCCCCceeEEEecCCCC
Q psy241 206 QLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKP 248 (753)
Q Consensus 206 ~~~~~i~~L~p~t~Y~~~V~a~n~~g~~~~s~~~~~~t~~~~p 248 (753)
...+.|.+......-.+.+.|.|..|....+..+.+.-.+.+|
T Consensus 55 ~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~~P~pP 97 (98)
T cd05762 55 SSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDKPDPP 97 (98)
T ss_pred eeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEecCCCCC
Confidence 3567888888888888899999999986554445555444333
No 78
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=55.09 E-value=24 Score=26.12 Aligned_cols=28 Identities=11% Similarity=0.186 Sum_probs=23.6
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCCCCccC
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNALGAGLA 139 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~g~~~~ 139 (753)
..+ |.++.+.+...|+|.|.|..|....
T Consensus 36 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 64 (71)
T cd05876 36 KTLQLDNVLESDDGEYVCTAENSEGSARH 64 (71)
T ss_pred CEEEEcccCHHhCEEEEEEEEcCCCeEEE
Confidence 466 8999999999999999999986543
No 79
>PF11344 DUF3146: Protein of unknown function (DUF3146); InterPro: IPR021492 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=54.92 E-value=8.3 Score=28.39 Aligned_cols=15 Identities=53% Similarity=0.906 Sum_probs=13.5
Q ss_pred CCCCCCEEEEEEEEE
Q psy241 616 GLEPGRIYYFKIKAR 630 (753)
Q Consensus 616 ~L~p~t~Y~~~V~A~ 630 (753)
.|+||..|.|+|||+
T Consensus 66 ~LEpGgdY~Ftirak 80 (80)
T PF11344_consen 66 QLEPGGDYSFTIRAK 80 (80)
T ss_pred eccCCCceEEEEecC
Confidence 589999999999984
No 80
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=54.75 E-value=42 Score=25.01 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=23.7
Q ss_pred eE-eeCCcCCCEEEEEEEEEeCCCCccCCC
Q psy241 113 AI-IQGLHPNTSYTFRVVAYNALGAGLASS 141 (753)
Q Consensus 113 ~~-i~~L~p~t~Y~~~V~a~~~~g~~~~s~ 141 (753)
.+ |.++++.+...|.|.|.|..|....+.
T Consensus 41 ~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~ 70 (75)
T cd05763 41 VFFIVDVKIEDTGVYSCTAQNTAGSISANA 70 (75)
T ss_pred EEEEeeCCcccCEEEEEEEEcCCCEEEeeE
Confidence 45 889999999999999999988654433
No 81
>PHA02579 7 baseplate wedge subunit; Provisional
Probab=54.39 E-value=41 Score=37.20 Aligned_cols=83 Identities=18% Similarity=0.284 Sum_probs=51.7
Q ss_pred cceEEeecCCCCeeEEEEeeCCCCCCCceeEEEEEEEeCCCC---------CceEEEEeeCceeEEEEcCCCCCCEEEEE
Q psy241 556 RDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNT---------DQWIEESVVGDKMSTNVRGLEPGRIYYFK 626 (753)
Q Consensus 556 ~~l~~~~~~~~~~~v~l~W~~p~~~~g~i~~Y~V~~~~~~~~---------~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~ 626 (753)
..|++... +.+.+.|+|+.... --.|.|++...... -.|.......+...+.- .|.|.+.|.||
T Consensus 9 tslrI~kL--saN~v~l~WddVG~----NFyY~Ve~a~t~~~~g~~ip~~~~~w~nlg~T~~~~wFed-~~~p~t~Yk~R 81 (1030)
T PHA02579 9 TSLRIDKL--SANQVYLTWDDVGA----NFYYFVELAETRDADGELIPDDELRWINLGYTANNEWFED-KLQPNTYYKFR 81 (1030)
T ss_pred cEEEhhhh--ccceEEEEeeccCC----ceEEEEEEEeeccCCCccCCCccccceecCcccchhhhhh-ccCCcceEEEE
Confidence 45666666 88999999997633 37799998754322 12433333334434444 49999999999
Q ss_pred EEEEcCCCC--CCCCCceEEEc
Q psy241 627 IKARNSAGS--SPYSSTVTWTT 646 (753)
Q Consensus 627 V~A~~~~G~--g~~S~~~~~~T 646 (753)
|+..-. |. +.|-..-.|.|
T Consensus 82 v~~~~q-GFe~SdWv~teef~T 102 (1030)
T PHA02579 82 VAVAAQ-GFEQSDWVYTEEFET 102 (1030)
T ss_pred EEeecc-CCCccccEEeeceEe
Confidence 986544 54 55533333443
No 82
>PF13205 Big_5: Bacterial Ig-like domain
Probab=54.26 E-value=1.2e+02 Score=24.58 Aligned_cols=67 Identities=21% Similarity=0.292 Sum_probs=35.0
Q ss_pred CeeEEEEeeCCCCCCCceeEEEEEEEeCCCCCceEEEE-eeCceeEEEEc-CCCCCCEEEEEEEE--EcCCCC
Q psy241 567 PSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEES-VVGDKMSTNVR-GLEPGRIYYFKIKA--RNSAGS 635 (753)
Q Consensus 567 ~~~v~l~W~~p~~~~g~i~~Y~V~~~~~~~~~~~~~~~-~~~~~~~~~l~-~L~p~t~Y~~~V~A--~~~~G~ 635 (753)
...+.|.++.+-..........+.. ..+........ ..+....+... .|.+|+.|.+.|.. .+..|.
T Consensus 22 ~~~i~i~Fs~~v~~~s~~~~~~~~~--~~~~~~~v~~~~~~~~~~~i~p~~~L~~~t~Y~v~i~~~i~d~~Gn 92 (107)
T PF13205_consen 22 DSPIVITFSEPVDPASVSSAITITD--SNGSGVPVSFSSWDGNTLTITPSQPLKPGTTYTVTIDSGIKDLAGN 92 (107)
T ss_pred CCeEEEEECCceecCccceEEEEEe--cCCCcEEEEEEEccCCEEEEEECCcCCCCCEEEEEECCCCCCCCCC
Confidence 4588888887754333222222221 11111111112 34444444444 49999999999954 455564
No 83
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=53.07 E-value=30 Score=26.03 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=24.0
Q ss_pred eE-eeCCcCCCEEEEEEEEEeCCCCccCC
Q psy241 113 AI-IQGLHPNTSYTFRVVAYNALGAGLAS 140 (753)
Q Consensus 113 ~~-i~~L~p~t~Y~~~V~a~~~~g~~~~s 140 (753)
.+ |.++++.+...|+|.|.|..|....+
T Consensus 42 ~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~ 70 (75)
T cd05892 42 TLLIKNVNKKDAGWYTVSAVNEAGVATCH 70 (75)
T ss_pred EEEECCCChhhCEEEEEEEEcCcCeEEEE
Confidence 57 99999999999999999999865443
No 84
>PF08329 ChitinaseA_N: Chitinase A, N-terminal domain; InterPro: IPR013540 This domain is found in a number of bacterial chitinases and similar viral proteins. It is organised into a fibronectin III module domain-like fold, comprising only beta strands. Its function is not known, but it may be involved in interaction with the enzyme substrate, chitin [, ]. It is separated by a hinge region from the catalytic domain (IPR001223 from INTERPRO); this hinge region is probably mobile, allowing the N-terminal domain to have different relative positions in solution []. ; GO: 0004568 chitinase activity; PDB: 2WLY_A 1EDQ_A 2WM0_A 1X6N_A 1NH6_A 2WK2_A 1EHN_A 2WLZ_A 1EIB_A 1FFR_A ....
Probab=52.96 E-value=1.4e+02 Score=25.48 Aligned_cols=66 Identities=14% Similarity=0.123 Sum_probs=34.9
Q ss_pred EcCcEEEEEEcCCCCCCCcceEEEEEEEEcCCCCceEEeeccc-cceEeeCCcCCCEEEEEEEEEeCCCCccCC
Q psy241 68 VGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATAR-VEAIIQGLHPNTSYTFRVVAYNALGAGLAS 140 (753)
Q Consensus 68 ~~~~si~lsW~~~~~~~~~~~~Y~v~~~~~~~~~~~~~~~~~~-~~~~i~~L~p~t~Y~~~V~a~~~~g~~~~s 140 (753)
...-.|.|+|+.-...+| +.|.|++. +...+ ..... ..+..-....+-.|.++|..+|..|.+...
T Consensus 35 ~~~v~V~VtwN~WsG~~G--d~~kly~d--G~~V~---tG~~~~~~~a~~~~~~gG~y~~~VeLCN~~GCS~S~ 101 (133)
T PF08329_consen 35 NDQVDVSVTWNVWSGTNG--DTAKLYFD--GVLVW---TGPSPQQKSATFTVTKGGRYQMQVELCNADGCSTSA 101 (133)
T ss_dssp -SSEEEEEEEE-SSS-----SEEEEEET--TEEEE---EEE--SEEEEEEEE-S-EEEEEEEEEEETTEEEE--
T ss_pred cCceEEEEEEEEecCCCC--CEEEEEEC--CEEEE---eCCCccCceEEEEecCCCEEEEEEEEECCCCcccCC
Confidence 456789999998755444 57777642 21111 11111 122233335677999999999999966543
No 85
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=52.21 E-value=55 Score=25.53 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=24.2
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCCCCccCC
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNALGAGLAS 140 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~g~~~~s 140 (753)
..+ |.++.+.....|+|.|.|..|....+
T Consensus 56 ~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~ 85 (90)
T cd04972 56 YNLQLSNITSETQTTVTCTAENPVGQANVS 85 (90)
T ss_pred EEEEEecCCcccCEEEEEEEECCCCceeEE
Confidence 466 99999999999999999999865443
No 86
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=52.06 E-value=39 Score=26.95 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=24.6
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCCCCccCC
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNALGAGLAS 140 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~g~~~~s 140 (753)
..+ |.++++.+.-.|.|.|.|..|....+
T Consensus 64 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 93 (98)
T cd05870 64 SSLHIKDVKLSDSGRYDCEAASRIGGHQKS 93 (98)
T ss_pred eEEEEeeCCcCCCEEEEEEEeccCCcceeE
Confidence 467 99999999999999999999965443
No 87
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=51.02 E-value=79 Score=25.20 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=23.4
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCC-CCccCC
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNAL-GAGLAS 140 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~-g~~~~s 140 (753)
..+ |.++++.+...|+|.|.|.. |.+..+
T Consensus 60 ~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s 90 (96)
T cd05865 60 STLTIYNANIDDAGIYKCVVSNEDEGESEAT 90 (96)
T ss_pred eEEEEeccChhhCEEEEEEEEcCCCCcEEEE
Confidence 456 99999999999999999986 555443
No 88
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=49.95 E-value=1.2e+02 Score=23.65 Aligned_cols=61 Identities=16% Similarity=0.262 Sum_probs=38.2
Q ss_pred CCeeEEEEeeCCCCCCCceeEEEEEEEeCCCC--CceEEE--EeeC--ceeEEEE-cCCCCCCEEEEEEEE
Q psy241 566 DPSLVNLNWQPPKSANGQISGYTILYSSDPNT--DQWIEE--SVVG--DKMSTNV-RGLEPGRIYYFKIKA 629 (753)
Q Consensus 566 ~~~~v~l~W~~p~~~~g~i~~Y~V~~~~~~~~--~~~~~~--~~~~--~~~~~~l-~~L~p~t~Y~~~V~A 629 (753)
....+.|+|+..... ...|.|.+...... ...... .+.. ....+++ .+|.++..|.|++..
T Consensus 11 ~g~~~~I~W~~~~~~---~~~~~I~L~~g~~~~~~~~~~ia~~v~~~~gs~~~~~p~~l~~~~~Y~i~~~~ 78 (93)
T PF10342_consen 11 AGQPITITWTSDGTD---PGNVTIYLCNGNNTNLNFVQTIASNVSNSDGSYTWTIPSDLPSGGDYFIQIVN 78 (93)
T ss_pred CCCcEEEEEeCCCCC---CcEEEEEEEcCCCCCcceeEEEEecccCCCCEEEEEcCCCCCCCCcEEEEEEE
Confidence 347899999986422 36688888766552 111111 2222 3445555 569999999999983
No 89
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=49.79 E-value=21 Score=26.44 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=21.8
Q ss_pred eeCCcCCCEEEEEEEEEeCCCCccCC
Q psy241 115 IQGLHPNTSYTFRVVAYNALGAGLAS 140 (753)
Q Consensus 115 i~~L~p~t~Y~~~V~a~~~~g~~~~s 140 (753)
+.++.+.+...|+|.|.|..|....+
T Consensus 41 i~~v~~~D~G~Y~C~A~N~~G~~~~~ 66 (71)
T cd05723 41 VLGLVKSDEGFYQCIAENDVGNVQAS 66 (71)
T ss_pred EEcCCcccCEEEEEEEEcCCCEEEEE
Confidence 67888899999999999999875543
No 90
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=49.30 E-value=67 Score=27.86 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=29.4
Q ss_pred ceeEEEEcCCCCCCEEEEEEEEEcCCCCCCCCCceEEEcCCC
Q psy241 608 DKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649 (753)
Q Consensus 608 ~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~T~~~ 649 (753)
....|.+.+|.||++|+|+-...+..+ ...|..+...|.+.
T Consensus 100 rlsaYqVtNL~pGTkY~isY~Vtkgts-tESS~~i~msT~n~ 140 (184)
T PF07353_consen 100 RLSAYQVTNLQPGTKYYISYLVTKGTS-TESSNEIPMSTLNR 140 (184)
T ss_pred cceeEEeeccCCCcEEEEEEEEecCcc-ceecceeccccccc
Confidence 345799999999999999988877432 23455566666553
No 91
>PHA02579 7 baseplate wedge subunit; Provisional
Probab=49.27 E-value=84 Score=34.96 Aligned_cols=86 Identities=24% Similarity=0.386 Sum_probs=56.8
Q ss_pred CCceeEEEecCCCeEEEEEeCCCCCcccccCCCCccEEEEEEEeecCC-------CCCceEEec--cccceEEecCcccC
Q psy241 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGA-------SNPRYKYIN--ANITSVQINDLRPS 520 (753)
Q Consensus 450 ~p~~l~~~~~~~~sv~v~W~~p~~~~~~~~~~~~~~~Y~v~~~~~~~~-------~~~~~~~~~--~~~~~~~l~~L~p~ 520 (753)
+...|++...+.+.+.|+|+.. +..-.|.|++...... ....|.... .....+. ..+.|.
T Consensus 7 ~vtslrI~kLsaN~v~l~WddV----------G~NFyY~Ve~a~t~~~~g~~ip~~~~~w~nlg~T~~~~wFe-d~~~p~ 75 (1030)
T PHA02579 7 SVTSLRIDKLSANQVYLTWDDV----------GANFYYFVELAETRDADGELIPDDELRWINLGYTANNEWFE-DKLQPN 75 (1030)
T ss_pred cccEEEhhhhccceEEEEeecc----------CCceEEEEEEEeeccCCCccCCCccccceecCcccchhhhh-hccCCc
Confidence 3556888888999999999985 5566899999865432 112233322 2222333 349999
Q ss_pred ceeEEEEEEE-eCCCCCcceEEEEeee
Q psy241 521 TQYEFTVKVV-RAKKESEWSMIVLNTT 546 (753)
Q Consensus 521 t~Y~~~V~a~-~~~g~s~~s~~~~~~t 546 (753)
+.|.|+|+.. .+...|.|-.+..+.|
T Consensus 76 t~Yk~Rv~~~~qGFe~SdWv~teef~T 102 (1030)
T PHA02579 76 TYYKFRVAVAAQGFEQSDWVYTEEFET 102 (1030)
T ss_pred ceEEEEEEeeccCCCccccEEeeceEe
Confidence 9999999975 4445677755555544
No 92
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=48.74 E-value=12 Score=40.18 Aligned_cols=30 Identities=40% Similarity=0.739 Sum_probs=0.0
Q ss_pred CCCCCCEEEEEEEEEcCCCCCCCCCceEEEc
Q psy241 616 GLEPGRIYYFKIKARNSAGSSPYSSTVTWTT 646 (753)
Q Consensus 616 ~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~T 646 (753)
-|.+|..|.|++.+.+..|... ...+.|++
T Consensus 268 ~l~~g~~Y~~~l~v~~~~~~~~-~a~~~~~~ 297 (440)
T PF02010_consen 268 VLEPGSTYTFRLTVTDSSGSSG-SASISFTV 297 (440)
T ss_dssp -------------------------------
T ss_pred cccccccccccccccccccccc-cccccccc
Confidence 5999999999999999866533 44566666
No 93
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=47.83 E-value=1.1e+02 Score=23.42 Aligned_cols=72 Identities=17% Similarity=0.205 Sum_probs=41.4
Q ss_pred ccEEEEEcC--cEEEEEEcCCCCCCCcceEEEEEEEEcCCCCceEEeeccccceE-eeCCcCCCEEEEEEEEEeCCCCcc
Q psy241 62 SVSAIMVGP--RSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAI-IQGLHPNTSYTFRVVAYNALGAGL 138 (753)
Q Consensus 62 ~l~~~~~~~--~si~lsW~~~~~~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~-i~~L~p~t~Y~~~V~a~~~~g~~~ 138 (753)
.|.+...+. ..+.+.|..+...... ......+ ............+ |.++++.+...|.|.|.|..|...
T Consensus 5 ~L~C~~~g~~~~~~~i~W~~~~~~~~~--~~~~~~~------~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~ 76 (84)
T cd05742 5 VLNCTVLTELNEGVDFQWTYPGKKRGR--GKSMVTR------QSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQK 76 (84)
T ss_pred EEEEEEEeCCCccEEEEEecCCcccCC--ceEeecc------cccccceEEEEEEEECCCChhhCEEEEEEEccCCCceE
Confidence 366666555 5788999866432110 1111000 0000000112456 999999999999999999888655
Q ss_pred CCC
Q psy241 139 ASS 141 (753)
Q Consensus 139 ~s~ 141 (753)
.+.
T Consensus 77 ~s~ 79 (84)
T cd05742 77 EST 79 (84)
T ss_pred EEE
Confidence 543
No 94
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=47.21 E-value=68 Score=24.13 Aligned_cols=34 Identities=21% Similarity=0.338 Sum_probs=26.4
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCCCCccCCCceEE
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNALGAGLASSALPV 145 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~g~~~~s~~~~~ 145 (753)
..+ |.++.+.+...|+|.|.|..|....+..+.+
T Consensus 38 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l 72 (77)
T cd05760 38 RTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTL 72 (77)
T ss_pred CEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEE
Confidence 356 8999999999999999999986544444433
No 95
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=46.80 E-value=25 Score=26.32 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=24.9
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCCCCccCCC
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNALGAGLASS 141 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~g~~~~s~ 141 (753)
..+ |.++++.+...|+|.|.|..|....+.
T Consensus 39 g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 69 (73)
T cd05852 39 GSLEILNITKLDEGSYTCFAENNRGKANSTG 69 (73)
T ss_pred CEEEECcCChhHCEEEEEEEECCCCceeEEE
Confidence 357 999999999999999999998765543
No 96
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=46.71 E-value=83 Score=23.77 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.1
Q ss_pred eE-eeCCcCCCEEEEEEEEEeCCCC
Q psy241 113 AI-IQGLHPNTSYTFRVVAYNALGA 136 (753)
Q Consensus 113 ~~-i~~L~p~t~Y~~~V~a~~~~g~ 136 (753)
.+ |.++++.....|+|.|.|..|.
T Consensus 46 ~L~I~~~~~~DsG~Y~C~a~n~~g~ 70 (79)
T cd04973 46 EVQIKDAVPRDSGLYACVTSSPSGS 70 (79)
T ss_pred EEEECCCChhhCEEEEEEEeCCCCc
Confidence 56 9999999999999999988765
No 97
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=45.55 E-value=79 Score=21.97 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=20.3
Q ss_pred EEEcCCCCCcEEEEEEEEEeCCCCCCCC
Q psy241 209 YELTGLSHFTLYSIWVVAHNGNGAGTTS 236 (753)
Q Consensus 209 ~~i~~L~p~t~Y~~~V~a~n~~g~~~~s 236 (753)
+.+..+ ..-.|.|.|+|.+..|.....
T Consensus 16 ~t~~~~-~dG~y~itv~a~D~AGN~s~~ 42 (54)
T PF13754_consen 16 FTVPAL-ADGTYTITVTATDAAGNTSTS 42 (54)
T ss_pred EeCCCC-CCccEEEEEEEEeCCCCCCCc
Confidence 344455 577899999999999986544
No 98
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=44.81 E-value=34 Score=25.30 Aligned_cols=28 Identities=14% Similarity=0.148 Sum_probs=23.4
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCCCCccC
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNALGAGLA 139 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~g~~~~ 139 (753)
..+ |.++++.+...|+|.|.|..|....
T Consensus 35 ~~L~I~~v~~~D~G~YtC~a~N~~g~~~~ 63 (71)
T cd04976 35 HSLTIKDVTEEDAGNYTVVLTNKQAKLEK 63 (71)
T ss_pred CEEEECcCCHHHCEEEEEEEEcCCccEEE
Confidence 467 9999999999999999998875433
No 99
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=44.52 E-value=1.4e+02 Score=22.86 Aligned_cols=65 Identities=20% Similarity=0.189 Sum_probs=37.3
Q ss_pred ccEEEEEcCcEEEEEEcCCCCCCCcceEEEEEEEEcCCCCceEEeeccccceE-eeCCcCCCEEEEEEEEEeCCC
Q psy241 62 SVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAI-IQGLHPNTSYTFRVVAYNALG 135 (753)
Q Consensus 62 ~l~~~~~~~~si~lsW~~~~~~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~-i~~L~p~t~Y~~~V~a~~~~g 135 (753)
.|++...+...+.+.|..+....+... ....... .........+ |.++++.+...|.|.|.|..+
T Consensus 5 ~l~C~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~--------~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~ 70 (84)
T cd05861 5 TVNCIVQGNEVVDFSWTYPGKDIGKGI-PEVEEVK--------VPATTLRSTLTFPHATVEDSGTYECAAHESTQ 70 (84)
T ss_pred EEEEEEECCCccEEEEEECCccCCCCc-eEEEEEe--------cCCcEEEEEEEECCCCcCCCEEEEEEEEECcc
Confidence 366666666678899986543222111 0000000 0000012456 999999999999999998765
No 100
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=44.39 E-value=46 Score=26.16 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=22.9
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCCCCcc
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNALGAGL 138 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~g~~~ 138 (753)
..+ |.++.+.+...|+|.|.|..|...
T Consensus 58 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 85 (92)
T cd05737 58 ASLTIKGVSSEDSGKYGIVVKNKYGGET 85 (92)
T ss_pred EEEEEccCChhhCEEEEEEEEECCCcce
Confidence 356 999999999999999999988643
No 101
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=44.33 E-value=55 Score=25.40 Aligned_cols=27 Identities=15% Similarity=0.334 Sum_probs=23.6
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCCCCcc
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNALGAGL 138 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~g~~~ 138 (753)
..+ |.++.+.....|.|.|.|..|...
T Consensus 52 ~~L~I~~~~~~D~G~Y~c~a~N~~G~~~ 79 (86)
T cd05894 52 SSFVIEGAEREDEGVYTITVTNPVGEDH 79 (86)
T ss_pred EEEEECCCccCcCEEEEEEEEeCCCcEE
Confidence 466 999999999999999999999644
No 102
>KOG3515|consensus
Probab=43.94 E-value=36 Score=38.23 Aligned_cols=77 Identities=21% Similarity=0.280 Sum_probs=61.1
Q ss_pred eeCCcCCCEEEEEEEEEeCCCCccCCCceEEEccCCCCCCCCCcceEEeeecCcEEEEEEeCCCCCCCcceEEEEEEEEc
Q psy241 115 IQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEE 194 (753)
Q Consensus 115 i~~L~p~t~Y~~~V~a~~~~g~~~~s~~~~~~t~~~~~~P~~p~~l~~~~~~~~sv~lsW~~p~~~~~~~~~Y~v~~~~~ 194 (753)
+-+-.++..|.+.|.+.|..|.+.-+..+.--| .|..|.||.+......++.+.|.+.. .++.-..|.+.|...
T Consensus 658 ~~~~~~~~~y~~~c~t~n~lg~~~v~~~~~~~t-----~~~~~~n~~~~~~~~~~i~l~~~p~f-dgg~~q~f~~~~~~~ 731 (741)
T KOG3515|consen 658 ILNHIDGSDYENGCTTQNLLGSDHVSGAIHSGT-----ASVGPINLTYDNLTYSTISLEWMPGF-DGGLQQRFFLKYYDL 731 (741)
T ss_pred ccCCcchhhhcceeeecccCCCccccceecCCc-----CCCCccceEeeeeeeeeeceeeeecc-ccccccceeeehhhc
Confidence 666678889999999999999877666554443 46789999999999999999999976 456677888888765
Q ss_pred CCc
Q psy241 195 DTS 197 (753)
Q Consensus 195 ~~~ 197 (753)
+..
T Consensus 732 ~~~ 734 (741)
T KOG3515|consen 732 GTM 734 (741)
T ss_pred CCc
Confidence 543
No 103
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=43.92 E-value=78 Score=23.83 Aligned_cols=31 Identities=13% Similarity=0.196 Sum_probs=24.7
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCCCCccCCCc
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNALGAGLASSA 142 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~g~~~~s~~ 142 (753)
..+ |.++.+.+...|+|.|.|..|.......
T Consensus 42 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 73 (78)
T cd05743 42 GTLTIRDVKESDQGAYTCEAINTRGMVFGIPD 73 (78)
T ss_pred EEEEECCCChHHCEEEEEEEEecCCEEEeccc
Confidence 356 8899999999999999999996544433
No 104
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=43.86 E-value=72 Score=34.37 Aligned_cols=37 Identities=30% Similarity=0.587 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCCEEEEEEEEEcCCCCCCCCCceEEEcCCC
Q psy241 610 MSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649 (753)
Q Consensus 610 ~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~T~~~ 649 (753)
..+.+.||+|++.|.+++.+.. .+..+..-.|+|.++
T Consensus 64 ~~v~v~gL~p~t~Y~Y~~~~~~---~~~~s~~g~~rT~p~ 100 (453)
T PF09423_consen 64 VKVDVTGLQPGTRYYYRFVVDG---GGQTSPVGRFRTAPD 100 (453)
T ss_dssp EEEEE-S--TT-EEEEEEEE-----TTEE---EEEE--TT
T ss_pred eecccCCCCCCceEEEEEEEec---CCCCCCceEEEcCCC
Confidence 3588999999999999999832 245566778999843
No 105
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=43.80 E-value=25 Score=26.28 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=23.5
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCCCCccC
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNALGAGLA 139 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~g~~~~ 139 (753)
..+ |.++++.....|+|.|.|..|....
T Consensus 40 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 68 (74)
T cd05745 40 GTLRISRVALHDQGQYECQAVNIVGSQRT 68 (74)
T ss_pred CeEEEeeCCHHhCEEEEEEEEeCCCceeE
Confidence 356 9999999999999999999986543
No 106
>KOG3515|consensus
Probab=43.23 E-value=3.5e+02 Score=30.86 Aligned_cols=76 Identities=18% Similarity=0.190 Sum_probs=55.4
Q ss_pred ecCcccCceeEEEEEEEeCCCCCcceEEEEeeecCCCCCCCCcceEEeecCCCCeeEEEEeeCCCCCCCceeEEEEEEEe
Q psy241 514 INDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSS 593 (753)
Q Consensus 514 l~~L~p~t~Y~~~V~a~~~~g~s~~s~~~~~~t~~~~p~~~P~~l~~~~~~~~~~~v~l~W~~p~~~~g~i~~Y~V~~~~ 593 (753)
+-+-.++..|.+.+.+.+..|.+..+.....-+ .+..|.||.+... ....+.|.|.+-.+ .|.-..|.+.|..
T Consensus 658 ~~~~~~~~~y~~~c~t~n~lg~~~v~~~~~~~t----~~~~~~n~~~~~~--~~~~i~l~~~p~fd-gg~~q~f~~~~~~ 730 (741)
T KOG3515|consen 658 ILNHIDGSDYENGCTTQNLLGSDHVSGAIHSGT----ASVGPINLTYDNL--TYSTISLEWMPGFD-GGLQQRFFLKYYD 730 (741)
T ss_pred ccCCcchhhhcceeeecccCCCccccceecCCc----CCCCccceEeeee--eeeeeceeeeeccc-cccccceeeehhh
Confidence 345667888998888888887766544433222 3467889998776 88999999998754 6677889999876
Q ss_pred CCC
Q psy241 594 DPN 596 (753)
Q Consensus 594 ~~~ 596 (753)
.+.
T Consensus 731 ~~~ 733 (741)
T KOG3515|consen 731 LGT 733 (741)
T ss_pred cCC
Confidence 654
No 107
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=42.88 E-value=8.1 Score=37.89 Aligned_cols=28 Identities=29% Similarity=0.221 Sum_probs=0.0
Q ss_pred cCCcccC--CCCCCCCCCcccccchhcc-cc
Q psy241 674 TGGKQQA--PATQINPPDLWIHHDQMEL-KA 701 (753)
Q Consensus 674 ~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~ 701 (753)
|+||+.. +...+..+-+-++++++|+ |+
T Consensus 174 R~GK~~~ee~~~f~~KGiPvIF~dElee~kp 204 (290)
T PF05454_consen 174 RKGKMSLEEQKTFISKGIPVIFQDELEESKP 204 (290)
T ss_dssp -------------------------------
T ss_pred hccccccchhHHHHhcCCceeccccccccCC
Confidence 6666664 3345666677777777766 54
No 108
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=42.04 E-value=80 Score=23.51 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=26.4
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCCCCccCCCceEE
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNALGAGLASSALPV 145 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~g~~~~s~~~~~ 145 (753)
..+ |.++.+.....|+|.|.|..|.......+.+
T Consensus 39 ~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (76)
T cd05736 39 SELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFV 73 (76)
T ss_pred CEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEE
Confidence 456 8899999999999999999987665444433
No 109
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=41.32 E-value=31 Score=26.74 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=29.0
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCCCCccCCCceEEE
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNALGAGLASSALPVK 146 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~g~~~~s~~~~~~ 146 (753)
..+ |.++++.+...|+|.|.|..|....+..+.+.
T Consensus 47 ~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~ 82 (85)
T cd05854 47 GDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVR 82 (85)
T ss_pred eEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEEE
Confidence 466 99999999999999999999977766666554
No 110
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=41.26 E-value=50 Score=25.83 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=26.4
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCCCCccCCCce
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNALGAGLASSAL 143 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~g~~~~s~~~ 143 (753)
..+ |.+++......|+|.|.|..|....+..+
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L 87 (90)
T cd05858 55 EVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWL 87 (90)
T ss_pred eEEEEccCCHHHCEEEEEEEEeCCCcccceEEE
Confidence 456 99999999999999999999976555443
No 111
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=41.21 E-value=1.2e+02 Score=23.78 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=23.3
Q ss_pred eE-eeCCcCCCEEEEEEEEEeCCCCccC
Q psy241 113 AI-IQGLHPNTSYTFRVVAYNALGAGLA 139 (753)
Q Consensus 113 ~~-i~~L~p~t~Y~~~V~a~~~~g~~~~ 139 (753)
++ |.++++.+.-.|+|.|.|..|....
T Consensus 59 ~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05891 59 SLTIKGVTSEDSGKYSINVKNKYGGETV 86 (92)
T ss_pred EEEECCCChhhCEEEEEEEEeCCCceee
Confidence 56 9999999999999999999886544
No 112
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=41.07 E-value=61 Score=24.26 Aligned_cols=28 Identities=21% Similarity=0.219 Sum_probs=23.9
Q ss_pred eE-eeCCcCCCEEEEEEEEEeCCCCccCC
Q psy241 113 AI-IQGLHPNTSYTFRVVAYNALGAGLAS 140 (753)
Q Consensus 113 ~~-i~~L~p~t~Y~~~V~a~~~~g~~~~s 140 (753)
.+ |.++++.+...|+|.|.|..|....+
T Consensus 42 ~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 70 (75)
T cd05744 42 CLLIQNANKEDAGWYTVSAVNEAGVVSCN 70 (75)
T ss_pred EEEECCCCcccCEEEEEEEEcCCCcEEEE
Confidence 56 99999999999999999999865443
No 113
>PF11344 DUF3146: Protein of unknown function (DUF3146); InterPro: IPR021492 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=40.17 E-value=20 Score=26.46 Aligned_cols=15 Identities=33% Similarity=0.773 Sum_probs=13.2
Q ss_pred CcccCceeEEEEEEE
Q psy241 516 DLRPSTQYEFTVKVV 530 (753)
Q Consensus 516 ~L~p~t~Y~~~V~a~ 530 (753)
.|+||..|.|+|+|.
T Consensus 66 ~LEpGgdY~Ftirak 80 (80)
T PF11344_consen 66 QLEPGGDYSFTIRAK 80 (80)
T ss_pred eccCCCceEEEEecC
Confidence 489999999999983
No 114
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=39.16 E-value=41 Score=26.34 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=26.7
Q ss_pred eE-eeCCcCCCEEEEEEEEEeCCCCccCCCceEE
Q psy241 113 AI-IQGLHPNTSYTFRVVAYNALGAGLASSALPV 145 (753)
Q Consensus 113 ~~-i~~L~p~t~Y~~~V~a~~~~g~~~~s~~~~~ 145 (753)
.+ |.++.+.+...|+|.|.|..|....+..+.+
T Consensus 56 ~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L~V 89 (90)
T cd04974 56 VLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTV 89 (90)
T ss_pred eEEEeccccccCcEEEEEeecccCcccCCEEEEe
Confidence 45 8888999999999999999998766655443
No 115
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=39.01 E-value=43 Score=25.19 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=25.0
Q ss_pred eE-eeCCcCCCEEEEEEEEEeCCCCccCCCce
Q psy241 113 AI-IQGLHPNTSYTFRVVAYNALGAGLASSAL 143 (753)
Q Consensus 113 ~~-i~~L~p~t~Y~~~V~a~~~~g~~~~s~~~ 143 (753)
.+ +.++++.....|+|.|.|..|....+..+
T Consensus 42 ~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 73 (76)
T cd05868 42 TIIFSKVQERSSAVYQCNASNEYGYLLANAFV 73 (76)
T ss_pred EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEE
Confidence 45 88899999999999999999976554433
No 116
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=38.53 E-value=36 Score=24.90 Aligned_cols=28 Identities=18% Similarity=0.231 Sum_probs=23.4
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCCCCccC
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNALGAGLA 139 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~g~~~~ 139 (753)
..+ |.++.+.+...|+|.|.|..|....
T Consensus 36 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 64 (69)
T cd05746 36 GYLAIRDVGVADQGRYECVARNTIGYASV 64 (69)
T ss_pred CEEEECcCChhhCEEEEEEEECCCCcEEE
Confidence 356 8899999999999999999987544
No 117
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=37.96 E-value=53 Score=24.43 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=23.9
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCCCCccCC
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNALGAGLAS 140 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~g~~~~s 140 (753)
..+ |.+++......|+|.|.|..|....+
T Consensus 41 ~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~ 70 (76)
T cd04978 41 GTLILSNVQPNDTAVYQCNASNVHGYLLAN 70 (76)
T ss_pred CEEEECCCChhhCEEEEEEEEccCCeEEEe
Confidence 456 88999999999999999998865443
No 118
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=37.24 E-value=61 Score=23.96 Aligned_cols=31 Identities=13% Similarity=0.125 Sum_probs=24.9
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCCCCccCCCc
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNALGAGLASSA 142 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~g~~~~s~~ 142 (753)
..+ |.++.+.+...|+|.|.|..|.......
T Consensus 34 ~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t 65 (70)
T cd05864 34 VHLTIYEVTEKDAGNYTVVLTNPITKEEQRHT 65 (70)
T ss_pred CEEEECcCCHHHCEEEEEEEEECCCceeeEEE
Confidence 356 8899999999999999999986654433
No 119
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=36.60 E-value=2.5e+02 Score=24.08 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=21.8
Q ss_pred eE-eeCCcCCCEEEEEEEEEeCCCCccCCCceEE
Q psy241 113 AI-IQGLHPNTSYTFRVVAYNALGAGLASSALPV 145 (753)
Q Consensus 113 ~~-i~~L~p~t~Y~~~V~a~~~~g~~~~s~~~~~ 145 (753)
++ |.+++..+...|.|.+.+..|.......+.+
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v 35 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSV 35 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEE
Confidence 35 7788888888999998876555433333333
No 120
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=36.33 E-value=1.5e+02 Score=23.23 Aligned_cols=58 Identities=9% Similarity=0.116 Sum_probs=35.1
Q ss_pred CcEEEEEEcCCCCCCCcceEEEEEEEEcCCC---CceEEeecc----ccceE-e-eCCcCCCEEEEEEEE
Q psy241 70 PRSVALRWLPPTLPRGEILVYCVLYKREGSE---RERAYNATA----RVEAI-I-QGLHPNTSYTFRVVA 130 (753)
Q Consensus 70 ~~si~lsW~~~~~~~~~~~~Y~v~~~~~~~~---~~~~~~~~~----~~~~~-i-~~L~p~t~Y~~~V~a 130 (753)
...+.|+|+..... ...|.|........ ....+.... ....+ + .+|.++..|.+++..
T Consensus 12 g~~~~I~W~~~~~~---~~~~~I~L~~g~~~~~~~~~~ia~~v~~~~gs~~~~~p~~l~~~~~Y~i~~~~ 78 (93)
T PF10342_consen 12 GQPITITWTSDGTD---PGNVTIYLCNGNNTNLNFVQTIASNVSNSDGSYTWTIPSDLPSGGDYFIQIVN 78 (93)
T ss_pred CCcEEEEEeCCCCC---CcEEEEEEEcCCCCCcceeEEEEecccCCCCEEEEEcCCCCCCCCcEEEEEEE
Confidence 36799999986422 36788877765552 112221111 23344 4 668899999988873
No 121
>cd02848 Chitinase_N_term Chitinase N-terminus domain. Chitinases hydrolyze the abundant natural biopolymer chitin, producing smaller chito-oligosaccharides. Chitin consists of multiple N-acetyl-D-glucosamine (NAG) residues connected via beta-1,4-glycosidic linkages and is an important structural element of fungal cell wall and arthropod exoskeletons. On the basis of the mode of chitin hydrolysis, chitinases are classified as random, endo-, and exo-chitinases and based on sequence criteria, chitinases belong to families 18 and 19 of glycosyl hydrolases. The N-terminus of chitinase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitob
Probab=36.30 E-value=2.4e+02 Score=23.02 Aligned_cols=72 Identities=18% Similarity=0.371 Sum_probs=41.8
Q ss_pred CCeeEEEEeeCCCCCCCceeEEEEEEEeCCCCCceEEEEeeCceeEEEEcCCCCCCEEEEEEEEEcCCCCCCCCCceEEE
Q psy241 566 DPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWT 645 (753)
Q Consensus 566 ~~~~v~l~W~~p~~~~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~ 645 (753)
..-.|.|+|..-.... -..|.|.+... ..| .-...+...+.++. ...|-.|..+|+++|..|.+ .|.+..+.
T Consensus 32 d~v~V~V~wnvWsG~~--Gd~a~vl~dg~---~V~-~G~~~~~~~~at~~-v~kgG~y~m~V~lCn~dGCS-~S~~~~I~ 103 (106)
T cd02848 32 DAADVSVKWNAWSGDP--GDTYKVLLDGK---EVW-SGALTGSSGTATFK-VGKGGRYQMQVALCNGDGCS-TSAAKEIV 103 (106)
T ss_pred cceEEEEEEeeecCCC--CcEEEEEECCe---EEE-cccCCCCccEEEEE-eCCCCeEEEEEEEECCCCcc-CcCCEEEE
Confidence 5678889998653322 25677776221 001 01112233355555 34566899999999998864 45555443
No 122
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=36.28 E-value=53 Score=24.57 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=23.4
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCCCCccC
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNALGAGLA 139 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~g~~~~ 139 (753)
..+ |.++++.....|+|.|.|..|....
T Consensus 41 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 69 (76)
T cd05867 41 GALILTDVQPSDTAVYQCEARNRHGNLLA 69 (76)
T ss_pred CEEEECCCChhhCEEEEEEEECCCCeEEE
Confidence 456 8999999999999999999886443
No 123
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=36.20 E-value=1e+02 Score=23.90 Aligned_cols=35 Identities=11% Similarity=0.178 Sum_probs=29.4
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCCCCccCCCceEEE
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNALGAGLASSALPVK 146 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~g~~~~s~~~~~~ 146 (753)
..+ |.+++......|+|.|.|..+....+..+.+.
T Consensus 47 ~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~ 82 (85)
T cd05853 47 GDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVR 82 (85)
T ss_pred CcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEe
Confidence 356 99999999999999999999987777766665
No 124
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=35.27 E-value=66 Score=25.35 Aligned_cols=28 Identities=11% Similarity=0.256 Sum_probs=23.8
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCCCCccC
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNALGAGLA 139 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~g~~~~ 139 (753)
..+ |.+++......|.|.|.|..|....
T Consensus 62 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 90 (96)
T cd05732 62 SSLTLKDVQLTDAGRYDCEASNRIGGDQQ 90 (96)
T ss_pred EEEEECcCCcCcCEEeEEEEEeCCCCcEE
Confidence 456 9999999999999999999987543
No 125
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=34.80 E-value=41 Score=24.93 Aligned_cols=29 Identities=14% Similarity=0.214 Sum_probs=24.1
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCCCCccCC
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNALGAGLAS 140 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~g~~~~s 140 (753)
..+ |.++.+.....|+|.|.|..|....+
T Consensus 39 ~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~ 68 (73)
T cd04969 39 GSLEILNVTKSDEGKYTCFAENFFGKANST 68 (73)
T ss_pred CeEEEccCChhHCEEEEEEEECCCCceEEE
Confidence 357 99999999999999999999875543
No 126
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=34.78 E-value=2.2e+02 Score=22.23 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=26.5
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCCCCccCCCceEE
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNALGAGLASSALPV 145 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~g~~~~s~~~~~ 145 (753)
..+ |.++.......|+|.|.|..|....+..+.+
T Consensus 58 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V 92 (95)
T cd05730 58 SEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKV 92 (95)
T ss_pred CEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 456 8999999999999999999997655444433
No 127
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=34.04 E-value=57 Score=23.76 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=22.4
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCCCCcc
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNALGAGL 138 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~g~~~ 138 (753)
..+ |.++...+...|+|.|.|..|...
T Consensus 36 ~~L~i~~v~~~D~G~Y~C~a~N~~G~~~ 63 (71)
T cd05731 36 KTLKIDNVSEEDDGEYRCTASNSLGSAR 63 (71)
T ss_pred CEEEECCCCHHHCEEEEEEEEeCCceEE
Confidence 356 888888889999999999988543
No 128
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=33.97 E-value=53 Score=25.62 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=27.8
Q ss_pred eE-eeCCcCCCEEEEEEEEEeCCCCccCCCceEEE
Q psy241 113 AI-IQGLHPNTSYTFRVVAYNALGAGLASSALPVK 146 (753)
Q Consensus 113 ~~-i~~L~p~t~Y~~~V~a~~~~g~~~~s~~~~~~ 146 (753)
.+ |.++++.....|.|.|.|..|....+..+.+.
T Consensus 48 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 82 (90)
T cd05726 48 DLTITNVQRSDVGYYICQTLNVAGSILTKAYLEVT 82 (90)
T ss_pred eEEEeeCChhhCEEEEEEEEcCCCceEEEEEEEEe
Confidence 57 99999999999999999999976665555554
No 129
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=33.36 E-value=86 Score=22.95 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=23.4
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCCCCccC
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNALGAGLA 139 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~g~~~~ 139 (753)
..+ |.++...+...|+|.|.|..|....
T Consensus 31 ~~L~i~~v~~~D~G~YtC~a~N~~g~~~~ 59 (67)
T cd05863 31 HSLQIKDVTEASAGTYTLVLWNSAAGLEK 59 (67)
T ss_pred CEEEECCCCHHHCEEEEEEEEECCccEEE
Confidence 466 9999999999999999999885433
No 130
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=33.19 E-value=1.7e+02 Score=22.29 Aligned_cols=27 Identities=15% Similarity=0.199 Sum_probs=23.0
Q ss_pred eE-eeCCcCCCEEEEEEEEEeCCCCccC
Q psy241 113 AI-IQGLHPNTSYTFRVVAYNALGAGLA 139 (753)
Q Consensus 113 ~~-i~~L~p~t~Y~~~V~a~~~~g~~~~ 139 (753)
.+ |.++.+.+...|+|.|.|..|....
T Consensus 47 ~L~I~~~~~~D~G~YtC~A~N~~G~~~~ 74 (81)
T cd04971 47 CLQFDNPTHVNNGNYTLVASNEYGQDSK 74 (81)
T ss_pred EEEECCCCcccCeEEEEEEEeCCCCeee
Confidence 45 8889999999999999999987544
No 131
>PF04775 Bile_Hydr_Trans: Acyl-CoA thioester hydrolase/BAAT N-terminal region; InterPro: IPR006862 This entry presents the N-termini of acyl-CoA thioester hydrolase and bile acid-CoA:amino acid N-acetyltransferase (BAAT) []. This region is not thought to contain the active site of either enzyme. Thioesterase isoforms have been identified in peroxisomes, cytoplasm and mitochondria, where they are thought to have distinct functions in lipid metabolism []. For example, in peroxisomes, the hydrolase acts on bile-CoA esters [].; GO: 0016290 palmitoyl-CoA hydrolase activity, 0006629 lipid metabolic process; PDB: 3HLK_B 3K2I_B.
Probab=32.23 E-value=68 Score=27.23 Aligned_cols=41 Identities=20% Similarity=0.386 Sum_probs=25.7
Q ss_pred eeEEEEcCCCCCCEEEEEEEEEcCCCCCCCCCceEEEcCCCC
Q psy241 609 KMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASDM 650 (753)
Q Consensus 609 ~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~T~~~~ 650 (753)
...+.+.||.|+..|+++.+..+..|. .|.....|......
T Consensus 4 ~~~I~v~GL~p~~~vtl~a~~~~~~g~-~w~S~A~f~Ad~~G 44 (126)
T PF04775_consen 4 PVDIRVSGLPPGQEVTLRARLTDDNGV-QWQSYATFRADENG 44 (126)
T ss_dssp --EEEEES--TT-EEEEEEEEE-TTS--EEEEEEEEE--TTS
T ss_pred CeEEEEeCCCCCCEEEEEEEEEeCCCC-EEEEEEEEEcCCCC
Confidence 346889999999999999999986664 67666777776643
No 132
>KOG4194|consensus
Probab=31.84 E-value=1.4e+02 Score=32.55 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=40.7
Q ss_pred eEEeeccccceE-eeCCcCCCEEEEEEEEEeCCCCccCCCceEEEccCCCCCCCCC
Q psy241 103 RAYNATARVEAI-IQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPP 157 (753)
Q Consensus 103 ~~~~~~~~~~~~-i~~L~p~t~Y~~~V~a~~~~g~~~~s~~~~~~t~~~~~~P~~p 157 (753)
+...+..++..+ |.+.++.+...|.|.|.|..|.-.....+.+.-.+....|-.+
T Consensus 660 RRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~ 715 (873)
T KOG4194|consen 660 RRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLED 715 (873)
T ss_pred heeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccc
Confidence 334444456667 9999999999999999999998888888777765544444333
No 133
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=31.78 E-value=1.7e+02 Score=21.39 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=22.9
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCCCCcc
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNALGAGL 138 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~g~~~ 138 (753)
..+ |..+.+.....|+|.|.|..|...
T Consensus 43 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 70 (75)
T cd05750 43 SELQINKAKLADSGEYTCVVENILGNDT 70 (75)
T ss_pred EEEEEccCCcccCeEEEEEEEEcCCcee
Confidence 456 889999999999999999998643
No 134
>COG3979 Uncharacterized protein contain chitin-binding domain type 3 [General function prediction only]
Probab=31.45 E-value=95 Score=28.34 Aligned_cols=75 Identities=23% Similarity=0.243 Sum_probs=51.2
Q ss_pred CCCCCcceEEeeecCcEEEEEEeCCCCCCCcceEEEEEEEEcCCcceEEEeecccEEEEcCCCCCcEEEEEEEEEeCCCC
Q psy241 153 VPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGA 232 (753)
Q Consensus 153 ~P~~p~~l~~~~~~~~sv~lsW~~p~~~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~ 232 (753)
.|..+..+...+....++.+.|.... .+..+..|.+.++ -............++++|.+.++|.+.+.+....|.
T Consensus 4 ~~~a~~~~~~~~~~~~s~~~~~~s~~-~~~~~~~~p~~~~----~d~~~~~t~~~~~~~~g~~~et~y~~~~~a~~t~g~ 78 (181)
T COG3979 4 APPAPKSLMLTNVTTTSASLAASSSS-DNKASDTYPYVYA----WDPKTVYTTGTVVTVEGLAPETEYWTLVEAPDTSGN 78 (181)
T ss_pred cCcCccceeecchhhhhhhhcccccc-ccccccCCCcccc----cCccceecccceEEecCcceeeEEEEeeeccCCCCc
Confidence 34556677777888889999998852 2334455551111 111334555677899999999999999999987664
No 135
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=30.56 E-value=42 Score=25.37 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=23.9
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCCCCccC
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNALGAGLA 139 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~g~~~~ 139 (753)
..+ |.++++.+...|+|.|.|..|....
T Consensus 47 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 75 (81)
T cd05765 47 GQLVIYNAQPQDAGLYTCTARNSGGLLRA 75 (81)
T ss_pred cEEEEccCCcccCEEEEEEEecCCceEEE
Confidence 466 9999999999999999999986443
No 136
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=29.48 E-value=52 Score=25.38 Aligned_cols=27 Identities=30% Similarity=0.269 Sum_probs=22.5
Q ss_pred eE-eeCCcCCCEEEEEEEEEeCCCCccC
Q psy241 113 AI-IQGLHPNTSYTFRVVAYNALGAGLA 139 (753)
Q Consensus 113 ~~-i~~L~p~t~Y~~~V~a~~~~g~~~~ 139 (753)
.+ |.++...+...|+|.|.|..|....
T Consensus 52 ~L~i~~~~~~D~G~Y~C~a~N~~G~~~~ 79 (85)
T cd05728 52 DLRITKLSLSDSGMYQCVAENKHGTIYA 79 (85)
T ss_pred EEEEeeCCHHHCEEEEEEEECCCCeEEE
Confidence 56 8888989999999999999886443
No 137
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=29.47 E-value=1.5e+02 Score=21.82 Aligned_cols=27 Identities=11% Similarity=-0.012 Sum_probs=22.9
Q ss_pred ccEEEEcCCCCCcEEEEEEEEEeCCCC
Q psy241 206 QLSYELTGLSHFTLYSIWVVAHNGNGA 232 (753)
Q Consensus 206 ~~~~~i~~L~p~t~Y~~~V~a~n~~g~ 232 (753)
...+.|.++.+...-.+.+.|.|..|.
T Consensus 39 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 65 (74)
T cd05748 39 STSLVIKNAERSDSGKYTLTLKNPAGE 65 (74)
T ss_pred eEEEEECCCCcCcCEEEEEEEECCCcc
Confidence 456888899998888899999998886
No 138
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=28.31 E-value=1.1e+02 Score=23.11 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=24.6
Q ss_pred EeeCceeEEEEcCCCCCCEEEEEEEEE-cCCC
Q psy241 604 SVVGDKMSTNVRGLEPGRIYYFKIKAR-NSAG 634 (753)
Q Consensus 604 ~~~~~~~~~~l~~L~p~t~Y~~~V~A~-~~~G 634 (753)
...+..+.|.=.+|.+|..|.++|+|. +..|
T Consensus 23 ~~~G~~R~F~T~~L~~G~~y~Y~v~a~~~~dG 54 (75)
T TIGR03000 23 NGTGTVRTFTTPPLEAGKEYEYTVTAEYDRDG 54 (75)
T ss_pred ccCccEEEEECCCCCCCCEEEEEEEEEEecCC
Confidence 445667789999999999999999994 3334
No 139
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=27.88 E-value=2.3e+02 Score=23.14 Aligned_cols=32 Identities=22% Similarity=0.210 Sum_probs=22.7
Q ss_pred ceE-eeCCc-CCCEEEEEEEEEeCCCCccCCCce
Q psy241 112 EAI-IQGLH-PNTSYTFRVVAYNALGAGLASSAL 143 (753)
Q Consensus 112 ~~~-i~~L~-p~t~Y~~~V~a~~~~g~~~~s~~~ 143 (753)
..+ |.++. +.....|+|.|.|..|....+..+
T Consensus 69 s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L 102 (109)
T cd05773 69 SILTIINVSAALDYALFTCTAHNSLGEDSLDIQL 102 (109)
T ss_pred eEEEECcCCccCCCEEEEEEEEeCCccCcEEEEE
Confidence 345 77776 466678999999999976443333
No 140
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=24.98 E-value=3.2e+02 Score=21.00 Aligned_cols=32 Identities=9% Similarity=0.077 Sum_probs=24.7
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCCCCccCCCce
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNALGAGLASSAL 143 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~g~~~~s~~~ 143 (753)
..+ |.+++......|.|.|.|..|....+..+
T Consensus 50 s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~ 82 (86)
T cd05862 50 STLTIENVTLSDLGRYTCTASSGQMIAKNSTIV 82 (86)
T ss_pred eEEEEecCCcccCEEEEEEEeecceEecccEEE
Confidence 455 88999999999999999987755544433
No 141
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=24.61 E-value=90 Score=23.44 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=22.2
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCCCCc
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNALGAG 137 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~g~~ 137 (753)
..+ |.++.+.....|.|.|.|..|..
T Consensus 48 ~~L~i~~v~~~D~G~Y~C~a~N~~G~~ 74 (82)
T cd05856 48 WTLSLKNLKPEDSGKYTCHVSNRAGEI 74 (82)
T ss_pred EEEEEccCChhhCEEEEEEEEcCCccE
Confidence 456 88999999999999999988853
No 142
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=23.81 E-value=1.3e+02 Score=23.59 Aligned_cols=26 Identities=8% Similarity=0.156 Sum_probs=23.0
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCCCCc
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNALGAG 137 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~g~~ 137 (753)
..+ |.+++..+...|+|.|.|..|..
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 81 (91)
T cd05740 55 RTLTFNNVTRSDTGHYQCEASNEVSNM 81 (91)
T ss_pred CEEEECcCChhhCEEEEEEEEcCCCCE
Confidence 467 99999999999999999999864
No 143
>KOG1378|consensus
Probab=23.80 E-value=9.1e+02 Score=25.76 Aligned_cols=87 Identities=17% Similarity=0.299 Sum_probs=47.7
Q ss_pred CCCCcccEEEEEcC-cEEEEEEcCCCCCCCcceEEEEEEEEcCCC--CceEEe-e--------cc-ccceE-eeCCcCCC
Q psy241 57 PSAPQSVSAIMVGP-RSVALRWLPPTLPRGEILVYCVLYKREGSE--RERAYN-A--------TA-RVEAI-IQGLHPNT 122 (753)
Q Consensus 57 P~~P~~l~~~~~~~-~si~lsW~~~~~~~~~~~~Y~v~~~~~~~~--~~~~~~-~--------~~-~~~~~-i~~L~p~t 122 (753)
-..|..+.++.... +.+.++|....... .+..|-..-...... ...... . .. -.... +.+|++++
T Consensus 42 ~~~peQvhlS~~~~~~~m~VswvT~~~~~-~~V~Yg~~~~~~~~~~~~~~~~~~~~~y~~~~~~sg~ih~~~~~~L~~~t 120 (452)
T KOG1378|consen 42 VNSPEQVHLSFTDNLNEMRVSWVTGDGEE-NVVRYGEVKDKLDNSAARGMTEAWTDGYANGWRDSGYIHDAVMKNLEPNT 120 (452)
T ss_pred CCCCCeEEEeccCCCCcEEEEEeCCCCCC-ceEEEeecCCCccccccccceEEEecccccccceeeeEeeeeecCCCCCc
Confidence 34566677765543 49999999876422 233333211110000 111110 0 11 12345 99999999
Q ss_pred EEEEEEEEEeCCCCccCCCceEEEccC
Q psy241 123 SYTFRVVAYNALGAGLASSALPVKTEP 149 (753)
Q Consensus 123 ~Y~~~V~a~~~~g~~~~s~~~~~~t~~ 149 (753)
.|.|+|=. ...+|....+.|.+
T Consensus 121 ~YyY~~Gs-----~~~wS~~f~F~t~p 142 (452)
T KOG1378|consen 121 RYYYQVGS-----DLKWSEIFSFKTPP 142 (452)
T ss_pred eEEEEeCC-----CCCcccceEeECCC
Confidence 99999833 23378888888753
No 144
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=23.29 E-value=3.3e+02 Score=20.52 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=22.9
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCCCCccC
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNALGAGLA 139 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~g~~~~ 139 (753)
..+ |.++.+.....|+|.|.|..|....
T Consensus 51 ~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~ 79 (85)
T cd05857 51 WSLIMESVVPSDKGNYTCVVENEYGSINH 79 (85)
T ss_pred eEEEEccCCcccCEEEEEEEEeCCCEEEE
Confidence 345 8888999999999999999986544
No 145
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=23.22 E-value=77 Score=24.32 Aligned_cols=35 Identities=17% Similarity=0.179 Sum_probs=27.3
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCCCCccCCCceEEE
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNALGAGLASSALPVK 146 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~g~~~~s~~~~~~ 146 (753)
..+ |.+++......|+|.|.|..|....+..+.+.
T Consensus 47 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 82 (85)
T cd04970 47 GDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVR 82 (85)
T ss_pred ceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEEE
Confidence 467 99999999999999999988865555444444
No 146
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=22.93 E-value=3.7e+02 Score=21.18 Aligned_cols=26 Identities=19% Similarity=0.501 Sum_probs=21.0
Q ss_pred eE-eeCCcC-CCEEEEEEEEEeCCCCcc
Q psy241 113 AI-IQGLHP-NTSYTFRVVAYNALGAGL 138 (753)
Q Consensus 113 ~~-i~~L~p-~t~Y~~~V~a~~~~g~~~ 138 (753)
.+ |.+++. .....|.|.|.|..|...
T Consensus 65 ~L~I~~v~~~d~~G~Y~C~A~N~~G~~~ 92 (98)
T cd05758 65 TLTISNTQESDFQTSYNCTAWNSFGSGT 92 (98)
T ss_pred EEEECCccccccceeEEEEEEcCCCccc
Confidence 56 888888 447899999999998644
No 147
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=22.88 E-value=2.7e+02 Score=21.03 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=22.8
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCCCCcc
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNALGAGL 138 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~g~~~ 138 (753)
..+ |.++.+.....|+|.|.|..|...
T Consensus 51 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 78 (86)
T cd05724 51 GNLLIAEARKSDEGTYKCVATNMVGERE 78 (86)
T ss_pred CEEEEeECCcccCEEEEEEEEeccCcee
Confidence 456 999999999999999999888543
No 148
>PF07532 Big_4: Bacterial Ig-like domain (group 4); InterPro: IPR011081 This entry represents bacterial domains with an Ig-like fold. These domains are found in a variety of bacterial surface proteins.
Probab=22.41 E-value=2.9e+02 Score=19.48 Aligned_cols=33 Identities=27% Similarity=0.488 Sum_probs=23.8
Q ss_pred eecCCCCCCCCcceEEeecCCCCeeEEEEeeCC
Q psy241 545 TTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPP 577 (753)
Q Consensus 545 ~t~~~~p~~~P~~l~~~~~~~~~~~v~l~W~~p 577 (753)
++.....+.-|..+.+...+.....+.+.|+..
T Consensus 7 t~~~g~~~~LP~~V~v~~~dGs~~~~~V~W~~~ 39 (59)
T PF07532_consen 7 TTAVGEKPQLPETVTVTYSDGSTEEVPVTWDPI 39 (59)
T ss_pred EEeCCCcCCCCCEEEEEECCCCEEEEEeEeCCC
Confidence 333444456788888888777777899999953
No 149
>KOG3834|consensus
Probab=22.24 E-value=1.6e+02 Score=30.60 Aligned_cols=69 Identities=20% Similarity=0.272 Sum_probs=51.5
Q ss_pred eEEeecCCCCeeEEEEeeCCC-CCCCceeEEEEEEEeCCCC--CceEEEEeeCceeEEEEcCCCCCCEEEEEE
Q psy241 558 LTVVSKEGDPSLVNLNWQPPK-SANGQISGYTILYSSDPNT--DQWIEESVVGDKMSTNVRGLEPGRIYYFKI 627 (753)
Q Consensus 558 l~~~~~~~~~~~v~l~W~~p~-~~~g~i~~Y~V~~~~~~~~--~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V 627 (753)
|+++..+.....++..|-.+. ...|.+.+|.|++...... ..|....+..+. -..+-||.+++.|.+-+
T Consensus 66 Vkltv~n~kt~~~R~v~I~ps~~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~S-PaalAgl~~~~DYivG~ 137 (462)
T KOG3834|consen 66 VKLTVYNSKTQEVRIVEIVPSNNWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNS-PAALAGLRPYTDYIVGI 137 (462)
T ss_pred eEEEEEecccceeEEEEecccccccccccceEEEeccCccchhheeeeeecCCCC-HHHhcccccccceEecc
Confidence 555555446677888888765 4556789999999876544 567777777665 67788999999999887
No 150
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=21.97 E-value=3.5e+02 Score=20.76 Aligned_cols=35 Identities=11% Similarity=-0.052 Sum_probs=26.8
Q ss_pred cEEEEcCCCCCcEEEEEEEEEeCCCCCCCCceeEE
Q psy241 207 LSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSV 241 (753)
Q Consensus 207 ~~~~i~~L~p~t~Y~~~V~a~n~~g~~~~s~~~~~ 241 (753)
..+.|.++++...-.+++.|.|..|....+..+.+
T Consensus 47 ~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V 81 (85)
T cd05854 47 GDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVV 81 (85)
T ss_pred eEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEE
Confidence 46889999999999999999999886544443333
No 151
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=21.89 E-value=1.3e+02 Score=32.41 Aligned_cols=47 Identities=21% Similarity=0.301 Sum_probs=20.3
Q ss_pred ceEEecCcccCceeEEEEEEEeCCCCCcceEEEEeeecCCCCCCCCcceEEee
Q psy241 510 TSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVS 562 (753)
Q Consensus 510 ~~~~l~~L~p~t~Y~~~V~a~~~~g~s~~s~~~~~~t~~~~p~~~P~~l~~~~ 562 (753)
..+.+++|+|++.|.+++..... ...+..-.++|. |...+..+++..
T Consensus 64 ~~v~v~gL~p~t~Y~Y~~~~~~~---~~~s~~g~~rT~---p~~~~~~~r~a~ 110 (453)
T PF09423_consen 64 VKVDVTGLQPGTRYYYRFVVDGG---GQTSPVGRFRTA---PDGDPDPFRFAF 110 (453)
T ss_dssp EEEEE-S--TT-EEEEEEEE--T---TEE---EEEE-----TT-----EEEEE
T ss_pred eecccCCCCCCceEEEEEEEecC---CCCCCceEEEcC---CCCCCCceEEEE
Confidence 35789999999999999998332 222334455664 323333455444
No 152
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=21.00 E-value=94 Score=24.66 Aligned_cols=28 Identities=11% Similarity=0.211 Sum_probs=23.5
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCCCCccC
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNALGAGLA 139 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~g~~~~ 139 (753)
..+ |.++...+...|+|.|.|..|....
T Consensus 63 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 91 (97)
T cd05869 63 SSLTLKYIQYTDAGEYLCTASNTIGQDSQ 91 (97)
T ss_pred EEEEEecCccCcCEEEEEEEecCCCCeeE
Confidence 356 8999999999999999999996544
No 153
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=20.93 E-value=4.1e+02 Score=20.70 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=21.7
Q ss_pred ceE-eeCCcCCCEEEEEEEEEeCCCC
Q psy241 112 EAI-IQGLHPNTSYTFRVVAYNALGA 136 (753)
Q Consensus 112 ~~~-i~~L~p~t~Y~~~V~a~~~~g~ 136 (753)
..+ |.++.+.+...|+|.|.|..|.
T Consensus 57 ~~L~I~~v~~~D~G~Y~C~A~N~~g~ 82 (92)
T cd04977 57 STLTIYNANIEDAGIYKCVATDAKGT 82 (92)
T ss_pred EEEEEecCCcccCEEEEEEEEcCCCC
Confidence 466 9999999999999999998664
No 154
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=20.82 E-value=4.1e+02 Score=20.64 Aligned_cols=36 Identities=11% Similarity=0.062 Sum_probs=26.0
Q ss_pred ccceE-eeCCcCCCEEEEEEEEEeC-CCCccCCCceEE
Q psy241 110 RVEAI-IQGLHPNTSYTFRVVAYNA-LGAGLASSALPV 145 (753)
Q Consensus 110 ~~~~~-i~~L~p~t~Y~~~V~a~~~-~g~~~~s~~~~~ 145 (753)
....+ |..+.+.....|+|+..+. .+.+..|+.+.+
T Consensus 51 ~~~~f~i~~v~~~~~G~Y~C~~~~~~~~~S~~Sd~lel 88 (91)
T cd05751 51 NKAKFFIPSMKREHAGRYRCYYRSGVALWSEPSDPLEL 88 (91)
T ss_pred eeEEEEccCCChhHCEEEEEEEECCCCccCCCCCcEEE
Confidence 34567 9999999999999999876 344555554433
No 155
>PF14509 GH97_C: Glycosyl-hydrolase 97 C-terminal, oligomerisation; PDB: 3A24_A 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A.
Probab=20.79 E-value=1.1e+02 Score=24.84 Aligned_cols=59 Identities=17% Similarity=0.433 Sum_probs=36.5
Q ss_pred eeCCCCCCCceeEEEEEEEeCCCCCceEEEEeeCc---eeEEEEcCCCCCCEEEEEEEEEcC
Q psy241 574 WQPPKSANGQISGYTILYSSDPNTDQWIEESVVGD---KMSTNVRGLEPGRIYYFKIKARNS 632 (753)
Q Consensus 574 W~~p~~~~g~i~~Y~V~~~~~~~~~~~~~~~~~~~---~~~~~l~~L~p~t~Y~~~V~A~~~ 632 (753)
|+.-.-..|.+..|.|.-+...+.+.|..-.+.+. ...+.|+-|..+..|.+++..-..
T Consensus 3 WDeT~~L~g~pGeyvviARr~~~G~~Wyvg~in~~~~r~i~l~L~FL~~g~~y~a~i~~D~~ 64 (103)
T PF14509_consen 3 WDETRVLDGYPGEYVVIARRKRDGDDWYVGGINGEDARTITLPLSFLDKGKKYTATIYTDGP 64 (103)
T ss_dssp ECEEEEEEEETTTEEEEEEEETTTTEEEEEEEE-TT-EEEEEEGCCS-TT--EEEEEEEE-T
T ss_pred ccceEEeCCcCceEEEEEEEcCCCCCEEEEEeeCCCceEEEEECcccCCCCcEEEEEEEeCC
Confidence 44433334456679998888743366887766653 345667789999899999997654
No 156
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=20.64 E-value=1.3e+02 Score=22.96 Aligned_cols=27 Identities=15% Similarity=0.190 Sum_probs=22.5
Q ss_pred eE-eeCCcCCCEEEEEEEEEeCCCCccC
Q psy241 113 AI-IQGLHPNTSYTFRVVAYNALGAGLA 139 (753)
Q Consensus 113 ~~-i~~L~p~t~Y~~~V~a~~~~g~~~~ 139 (753)
.+ |.+..+.+...|+|.|.|..|....
T Consensus 45 ~L~i~~~~~~D~G~YtC~A~N~~G~~~~ 72 (79)
T cd05855 45 CLQLDNPTHLNNGIYTLVAKNEYGEDEK 72 (79)
T ss_pred EEEECCCCcccCEEEEEEEEcCCcccce
Confidence 45 8888888999999999999996543
Done!