RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy241
(753 letters)
>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of
internal repeats found in the plasma protein
fibronectin. Its tenth fibronectin type III repeat
contains an RGD cell recognition sequence in a flexible
loop between 2 strands. Approximately 2% of all animal
proteins contain the FN3 repeat; including extracellular
and intracellular proteins, membrane spanning cytokine
receptors, growth hormone receptors, tyrosine
phosphatase receptors, and adhesion molecules. FN3-like
domains are also found in bacterial glycosyl hydrolases.
Length = 93
Score = 74.1 bits (182), Expect = 3e-16
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 553 SAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIE-ESVVGDKMS 611
S P +L V + + V L+W PP+ G I+GY + Y + + W E E G + S
Sbjct: 2 SPPTNLRV--TDVTSTSVTLSWTPPEDDGGPITGYVVEYR-EKGSGDWKEVEVTPGSETS 58
Query: 612 TNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTT 646
+ GL+PG Y F+++A N G SP S +VT TT
Sbjct: 59 YTLTGLKPGTEYEFRVRAVNGGGESPPSESVTVTT 93
Score = 73.3 bits (180), Expect = 6e-16
Identities = 32/93 (34%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATA--RVEAI 114
PS P ++ V SV L W PP G I Y V Y+ +GS + T
Sbjct: 1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVEVTPGSETSYT 60
Query: 115 IQGLHPNTSYTFRVVAYNALGAGLASSALPVKT 147
+ GL P T Y FRV A N G S ++ V T
Sbjct: 61 LTGLKPGTEYEFRVRAVNGGGESPPSESVTVTT 93
Score = 73.3 bits (180), Expect = 6e-16
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 154 PSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTP---QLSYE 210
PSPP N+ + V ++S+ ++W P G I Y + Y E+ + + V + SY
Sbjct: 1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVEVTPGSETSYT 60
Query: 211 LTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQT 243
LTGL T Y V A NG G S+ ++V T
Sbjct: 61 LTGLKPGTEYEFRVRAVNGGGESPPSESVTVTT 93
Score = 62.1 bits (151), Expect = 5e-12
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 247 KPSEPPANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGL 306
+ ++ + S+T+ W PP G ITGY + Y++K K E T G Y +TGL
Sbjct: 8 RVTDVTSTSVTLSWTPP--EDDGGPITGYVVEYREKGSGDWK-EVEVTPGSETSYTLTGL 64
Query: 307 NKSTTYQIKLWAMNVNGSGPATDWFSAET 335
T Y+ ++ A+N G P ++ + T
Sbjct: 65 KPGTEYEFRVRAVNGGGESPPSESVTVTT 93
Score = 57.1 bits (138), Expect = 3e-10
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 346 PDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVK-QILDVKQRSDE 404
P P +L+ +S+ +SWTPP D + G+ + + + ++ + ++ + S
Sbjct: 1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVEVTPGSETSYT 60
Query: 405 ITGLEPNSDYVISLRAFNEMGDGP 428
+TGL+P ++Y +RA N G+ P
Sbjct: 61 LTGLKPGTEYEFRVRAVNGGGESP 84
Score = 51.7 bits (124), Expect = 3e-08
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANI 509
PP L+ ++ S+ +SW T P+ G Y+V Y + +
Sbjct: 3 PPTNLRVTDVTSTSVTLSW---TPPED---DGGPITGYVVEYREKGSGDWKEVEVTPGSE 56
Query: 510 TSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTT 546
TS + L+P T+YEF V+ V ES S V TT
Sbjct: 57 TSYTLTGLKPGTEYEFRVRAVNGGGESPPSESVTVTT 93
>gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain.
Length = 84
Score = 70.1 bits (172), Expect = 6e-15
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 553 SAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMST 612
SAP +LTV + + L+W PP NG I+GY + Y ++W E +V G S
Sbjct: 1 SAPTNLTVTDV--TSTSLTLSWSPPPG-NGPITGYEVEYRPVNGGEEWKEITVPGTTTSY 57
Query: 613 NVRGLEPGRIYYFKIKARNSAGSSPYS 639
+ GL+PG Y +++A N AG P S
Sbjct: 58 TLTGLKPGTEYEVRVQAVNGAGEGPPS 84
Score = 62.8 bits (153), Expect = 3e-12
Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 155 SPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTS---VERHVVTPQLSYEL 211
S P N+ + V ++SL ++W P NG I Y + Y + E V SY L
Sbjct: 1 SAPTNLTVTDVTSTSLTLSWSPPPG-NGPITGYEVEYRPVNGGEEWKEITVPGTTTSYTL 59
Query: 212 TGLSHFTLYSIWVVAHNGNGAGTTS 236
TGL T Y + V A NG G G S
Sbjct: 60 TGLKPGTEYEVRVQAVNGAGEGPPS 84
Score = 57.0 bits (138), Expect = 2e-10
Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 58 SAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGS-ERERAYNATA-RVEAII 115
SAP +++ V S+ L W PP G I Y V Y+ E + +
Sbjct: 1 SAPTNLTVTDVTSTSLTLSWSPPP-GNGPITGYEVEYRPVNGGEEWKEITVPGTTTSYTL 59
Query: 116 QGLHPNTSYTFRVVAYNALGAGLAS 140
GL P T Y RV A N G G S
Sbjct: 60 TGLKPGTEYEVRVQAVNGAGEGPPS 84
Score = 52.0 bits (125), Expect = 1e-08
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 253 ANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTY 312
+ S+T+ W PP NG ITGY++ Y+ + ++ + +T G Y +TGL T Y
Sbjct: 13 STSLTLSWSPPPG---NGPITGYEVEYRPVN-GGEEWKEITVPGTTTSYTLTGLKPGTEY 68
Query: 313 QIKLWAMNVNGSGPAT 328
++++ A+N G GP +
Sbjct: 69 EVRVQAVNGAGEGPPS 84
Score = 50.9 bits (122), Expect = 4e-08
Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 7/90 (7%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANI 509
P L ++ S+ +SW + P Y V Y + G + +
Sbjct: 2 APTNLTVTDVTSTSLTLSW---SPPP----GNGPITGYEVEYRPVNGGEEWKEITVPGTT 54
Query: 510 TSVQINDLRPSTQYEFTVKVVRAKKESEWS 539
TS + L+P T+YE V+ V E S
Sbjct: 55 TSYTLTGLKPGTEYEVRVQAVNGAGEGPPS 84
Score = 46.3 bits (110), Expect = 2e-06
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 349 PASLKARPGGPSSIIVSWTPPADQSIMVRGFTLG-WGKGVPDEFVKQILDVKQRSDEITG 407
P +L +S+ +SW+PP + G+ + +E+ + + S +TG
Sbjct: 3 PTNLTVTDVTSTSLTLSWSPPPGNGP-ITGYEVEYRPVNGGEEWKEITVPGTTTSYTLTG 61
Query: 408 LEPNSDYVISLRAFNEMGDGP 428
L+P ++Y + ++A N G+GP
Sbjct: 62 LKPGTEYEVRVQAVNGAGEGP 82
>gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain. One of three types of
internal repeat within the plasma protein, fibronectin.
The tenth fibronectin type III repeat contains a RGD
cell recognition sequence in a flexible loop between 2
strands. Type III modules are present in both
extracellular and intracellular proteins.
Length = 83
Score = 66.1 bits (161), Expect = 2e-13
Identities = 31/83 (37%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLP--RGEILVYCVLYKREGSERERAYNATARVEAI 114
PS P ++ V SV L W PP G I+ Y V Y+ EGSE + +
Sbjct: 1 PSPPSNLRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREEGSEWKEVNVTPSSTSYT 60
Query: 115 IQGLHPNTSYTFRVVAYNALGAG 137
+ GL P T Y FRV A N G G
Sbjct: 61 LTGLKPGTEYEFRVRAVNGAGEG 83
Score = 60.7 bits (147), Expect = 1e-11
Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 154 PSPPLNVNIPVVGTSSLLVTWEKPTVTN--GEIKHYTLYYLEEDTSVERHVVTP-QLSYE 210
PSPP N+ + V ++S+ ++WE P G I Y + Y EE + + VTP SY
Sbjct: 1 PSPPSNLRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREEGSEWKEVNVTPSSTSYT 60
Query: 211 LTGLSHFTLYSIWVVAHNGNGAG 233
LTGL T Y V A NG G G
Sbjct: 61 LTGLKPGTEYEFRVRAVNGAGEG 83
Score = 58.8 bits (142), Expect = 6e-11
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 247 KPSEPPANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGL 306
+ ++ + S+T+ W+PP G G I GY++ Y+++ + + V Y +TGL
Sbjct: 8 RVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREEG---SEWKEVNVTPSSTSYTLTGL 64
Query: 307 NKSTTYQIKLWAMNVNGSG 325
T Y+ ++ A+N G G
Sbjct: 65 KPGTEYEFRVRAVNGAGEG 83
Score = 58.0 bits (140), Expect = 1e-10
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 553 SAPRDLTVVSKEGDPSLVNLNWQPPKSANGQ--ISGYTILYSSDPNTDQWIEESVVGDKM 610
S P +L V + + V L+W+PP I GY + Y +W E +V
Sbjct: 2 SPPSNLRVT--DVTSTSVTLSWEPPPDDGITGYIVGYRVEY--REEGSEWKEVNVTPSST 57
Query: 611 STNVRGLEPGRIYYFKIKARNSAGSS 636
S + GL+PG Y F+++A N AG
Sbjct: 58 SYTLTGLKPGTEYEFRVRAVNGAGEG 83
Score = 56.5 bits (136), Expect = 4e-10
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 346 PDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGW---GKGVPDEFVKQILDVKQRS 402
P P++L+ +S+ +SW PP D + G+ +G+ + E+ + + S
Sbjct: 1 PSPPSNLRVTDVTSTSVTLSWEPPPDDG--ITGYIVGYRVEYREEGSEWKEVNVTPSSTS 58
Query: 403 DEITGLEPNSDYVISLRAFNEMGDG 427
+TGL+P ++Y +RA N G+G
Sbjct: 59 YTLTGLKPGTEYEFRVRAVNGAGEG 83
Score = 44.9 bits (106), Expect = 5e-06
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 10/89 (11%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANI 509
PP L+ ++ S+ +SW P + Y+V Y +K +N
Sbjct: 3 PPSNLRVTDVTSTSVTLSW---EPPP-----DDGITGYIVGYRVEYREEGSEWKEVNVTP 54
Query: 510 --TSVQINDLRPSTQYEFTVKVVRAKKES 536
TS + L+P T+YEF V+ V E
Sbjct: 55 SSTSYTLTGLKPGTEYEFRVRAVNGAGEG 83
>gnl|CDD|219094 pfam06583, Neogenin_C, Neogenin C-terminus. This family represents
the C-terminus of eukaryotic neogenin precursor
proteins, which contains several potential
phosphorylation sites. Neogenin is a member of the N-CAM
family of cell adhesion molecules (and therefore
contains multiple copies of pfam00047 and pfam00041) and
is closely related to the DCC tumour suppressor gene
product - these proteins may play an integral role in
regulating differentiation programmes and/or cell
migration events within many adult and embryonic
tissues.
Length = 295
Score = 43.8 bits (103), Expect = 2e-04
Identities = 15/24 (62%), Positives = 19/24 (79%)
Query: 685 INPPDLWIHHDQMELKAIEKSSQG 708
+ PPDLWIHH++MELK I+KS
Sbjct: 3 LKPPDLWIHHERMELKNIDKSPHP 26
>gnl|CDD|184745 PRK14561, PRK14561, hypothetical protein; Provisional.
Length = 194
Score = 30.9 bits (71), Expect = 1.4
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 381 LGWGKGVPDEFVKQILDVKQR-SDEITGLEPNSDYVISLRA 420
LG+G+ D V+++ ++++ S+EI P SDY LR
Sbjct: 132 LGFGRKTIDRLVERLFEIEEGESEEI----PKSDYETELRE 168
>gnl|CDD|235864 PRK06807, PRK06807, DNA polymerase III subunit epsilon; Validated.
Length = 313
Score = 30.9 bits (70), Expect = 2.3
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 22/71 (30%)
Query: 385 KGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAF----NEMGDGPQKYESLRTRNEP 440
+P ++V ++D E TG P +D +I + A +E+ D ++ S
Sbjct: 4 ISLPLDYV--VIDF-----ETTGFNPYNDKIIQVAAVKYRNHELVD---QFVSYVN---- 49
Query: 441 PPQAPKVLIPP 451
P+ IP
Sbjct: 50 ----PERPIPD 56
>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional.
Length = 534
Score = 30.5 bits (69), Expect = 4.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 583 QISGYTILYSSDPNTDQWIEES 604
I Y I+ S +P T++W E S
Sbjct: 451 NIKVYNIVESYNPVTNKWTELS 472
>gnl|CDD|198368 cd07796, FGGY_NHO1_plant, Arabidopsis NHO1 and related proteins;
belongs to the FGGY family of carbohydrate kinases.
This subgroup includes Arabidopsis NHO1 (also known as
NONHOST1, or noh-host resistant 1) and other putative
plant glycerol kinases, which share strong homology with
glycerol kinases from bacteria, fungi, and animals.
Nonhost resistance of plants refers to the phenomenon
observed when all members of a plant species are
typically resistant to a specific parasite. NHO1 is
required for nonspecific resistance to nonhost
Pseudomonas bacteria, it is also required for resistance
to the fungal pathogen Botrytis cinerea. This subgroup
belongs to the FGGY family of carbohydrate kinases, the
monomers of which contain two large domains, which are
separated by a deep cleft that forms the active site.
This model includes both the N-terminal domain, which
adopts a ribonuclease H-like fold, and the structurally
related C-terminal domain.
Length = 503
Score = 29.2 bits (65), Expect = 8.9
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 678 QQAPATQINPPDLWIHHDQME-LKAIEKSSQGSLDLA 713
Q TQI P W+ HD ME L+ ++K +G+L A
Sbjct: 27 HQVEFTQIYPQAGWVEHDPMEILETVKKCMEGALAKA 63
>gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional.
Length = 433
Score = 29.2 bits (66), Expect = 9.2
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 323 GSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGG-PSSIIVS 365
G G +WF+A+TF VPDI K G P S +V+
Sbjct: 252 GFGRTGEWFAAQTFG------VVPDIMTIAKGIASGLPLSAVVA 289
>gnl|CDD|183450 PRK12335, PRK12335, tellurite resistance protein TehB; Provisional.
Length = 287
Score = 28.8 bits (65), Expect = 9.4
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 173 TWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTPQ 206
TW K TV GE+K Y L E+ + H+ +
Sbjct: 33 TWAKLTVLKGELKFYELT--EDGEELSEHIFDAE 64
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.311 0.128 0.378
Gapped
Lambda K H
0.267 0.0591 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 37,664,845
Number of extensions: 3610604
Number of successful extensions: 2159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2139
Number of HSP's successfully gapped: 37
Length of query: 753
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 649
Effective length of database: 6,324,786
Effective search space: 4104786114
Effective search space used: 4104786114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.3 bits)