RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy241
(753 letters)
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 244 bits (625), Expect = 5e-72
Identities = 101/618 (16%), Positives = 187/618 (30%), Gaps = 70/618 (11%)
Query: 60 PQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREG----SERERAYNATARVEAII 115
P+S + + + + +++K E+ N TA
Sbjct: 10 PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFT 69
Query: 116 QGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWE 175
N T ++ + L + + P P N++ V + W+
Sbjct: 70 DIASLNIQLTCNILTFGQLEQNVYGITIISGL-----PPEKPKNLSCIVNEGKKMRCEWD 124
Query: 176 KPTVTNGEIKHYTLYY---LEEDTSVERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGA 232
T+ E +TL + + TP +F +WV A N G
Sbjct: 125 GGRETHLETN-FTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGK 183
Query: 233 GTTSQELSVQTLSDKPSEPPAN-----------SITVRWQPPSRRGQNGIITGYKLRYKK 281
T S ++ + PP N + + W PS ++ II Y ++Y+
Sbjct: 184 VT-SDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSI--KSVIILKYNIQYRT 240
Query: 282 KDVKK-DKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDL 340
KD + TA R + + L T Y ++ M +G G +DW S E
Sbjct: 241 KDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDW-SEEASGITY 299
Query: 341 GEFTVPDIPASL-----KARPGGPSSIIVSWT--PPADQSIMVRGFTLGWGKGVPDEFVK 393
+ P S + G ++ + W PP + + + + + +
Sbjct: 300 ED--RPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLT-----RWKS 352
Query: 394 QILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPPMG 453
+ + + ++T N Y+ +L N +G ++ + L
Sbjct: 353 HLQNYTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDL----- 407
Query: 454 LKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLL--GASNPRYKYINANIT- 510
+ + W E + Y++ + L ++ + +
Sbjct: 408 --KAFPKDNMLWVEW---------TTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHR 456
Query: 511 SVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLV 570
+ +L S Y TV V A I ++A P+ P TV +K+ +
Sbjct: 457 TYLRGNLAESKCYLITVTPVYADGPGSPESIKA-YLKQAPPSKGP---TVRTKKVGKNEA 512
Query: 571 NLNWQ--PPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIK 628
L W P NG I YTI Y +V + L +Y ++
Sbjct: 513 VLEWDQLPVDVQNGFIRNYTIFYR--TIIGNETAVNVDSSHTEYTLSSLTSDTLYMVRMA 570
Query: 629 ARNSAGSSPYSSTVTWTT 646
A G T
Sbjct: 571 AYTDEGGKDGPEFTFTTP 588
Score = 233 bits (596), Expect = 9e-68
Identities = 93/520 (17%), Positives = 170/520 (32%), Gaps = 64/520 (12%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEA--- 113
P P+++S I+ + + W E L + + A
Sbjct: 103 PEKPKNLSCIVNEGKKMRCEWDGGRETHLET--NFTLKSEWATHKFADCKAKRDTPTSCT 160
Query: 114 IIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVV--GTSSLL 171
+ + V A NALG S + + P+PP N+++ +S L
Sbjct: 161 VDYSTVYFVNIEVWVEAENALGKV-TSDHINFDPVYKVK-PNPPHNLSVINSEELSSILK 218
Query: 172 VTWEKPTVTNGEIKHYTLYYLEEDTS-----VERHVVTPQLSYELTGLSHFTLYSIWVVA 226
+TW P++ + I Y + Y +D S + + S+ + L FT Y +
Sbjct: 219 LTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRC 278
Query: 227 HNGNGAGT---TSQELSVQTLSDKPSEPPAN-------------SITVRWQPPSRRGQNG 270
+G G S+E S T D+PS+ P+ ++ + W+ NG
Sbjct: 279 MKEDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANG 338
Query: 271 IITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDW 330
I Y++ + + TV +T + Y L N+ G A
Sbjct: 339 KILDYEVTLTRWK-SHLQNYTVNA------TKLTVNLTNDRYLATLTVRNLVGKSDAAVL 391
Query: 331 FSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGW----GKG 386
+F LKA P + + V WT P + V+ + L W K
Sbjct: 392 TIPAC------DFQATHPVMDLKAFP-KDNMLWVEWTTPRES---VKKYILEWCVLSDKA 441
Query: 387 VPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQAPK 446
+Q R+ L + Y+I++ G G + + PP + P
Sbjct: 442 PCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPT 501
Query: 447 VLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYIN 506
V +++ + + W Q+G R+Y + Y + N ++
Sbjct: 502 V-------RTKKVGKNEAVLEW---DQLPVDVQNG-FIRNYTIFYRTI--IGNETAVNVD 548
Query: 507 ANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTT 546
++ T ++ L T Y + + + T
Sbjct: 549 SSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFTFTTP 588
Score = 170 bits (432), Expect = 3e-45
Identities = 63/533 (11%), Positives = 163/533 (30%), Gaps = 48/533 (9%)
Query: 156 PPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTP----QLSYEL 211
P + + + + + ++ + + + + ++ + T S
Sbjct: 9 SPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTF 68
Query: 212 TGLSHFT-LYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPA-----NSITVRWQPPSR 265
T ++ + ++ + +KP + W
Sbjct: 69 TDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGR- 127
Query: 266 RGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSG 325
+ + T + L+ + K + V ++ + A N G
Sbjct: 128 --ETHLETNFTLKSEWATHKFADCKAKRD-TPTSCTVDYSTVYFVNIEVWVEAENALGKV 184
Query: 326 PATDWFSAETFSQDLGEFTVPDIPASLKARP--GGPSSIIVSWTPPADQSIMVRGFTLGW 383
+++ + D P+ P +L S + ++WT P+ +S+++ + + +
Sbjct: 185 ------TSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQY 238
Query: 384 ---GKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDG----PQKYESLRT 436
+ + + S + L+P ++YV +R E G G + S T
Sbjct: 239 RTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGIT 298
Query: 437 RNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLG 496
+ P +AP S ++++ W F+ +G+ Y V T
Sbjct: 299 YEDRPSKAPSFWYKID--PSHTQGYRTVQLVW---KTLPPFEANGK-ILDYEVTLTRWKS 352
Query: 497 ASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPR 556
N + + ++ + +Y T+ V +S+ +++ + +
Sbjct: 353 HLQ------NYTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTI-PACDFQATHPVM 405
Query: 557 DLTVVSKEGDPSLVNLNWQPPKSA-NGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVR 615
DL K+ +++ + W P+ + I + +L P W ++ +
Sbjct: 406 DLKAFPKD---NMLWVEWTTPRESVKKYILEWCVLSDKAPCITDW-QQEDGTVHRTYLRG 461
Query: 616 GLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASDMQEAGGIPNSNQVSNTMIL 668
L + Y + + G ++ G + +V +
Sbjct: 462 NLAESKCYLITVTPVYADGPGS-PESIKAYLKQAPPSKGPTVRTKKVGKNEAV 513
Score = 67.0 bits (163), Expect = 1e-11
Identities = 21/94 (22%), Positives = 31/94 (32%), Gaps = 2/94 (2%)
Query: 57 PSAPQSVSAIMVGPRSVALRW--LPPTLPRGEILVYCVLYKREGSERERAYNATARVEAI 114
PS +V VG L W LP + G I Y + Y+ ++ E
Sbjct: 496 PSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNVDSSHTEYT 555
Query: 115 IQGLHPNTSYTFRVVAYNALGAGLASSALPVKTE 148
+ L +T Y R+ AY G +
Sbjct: 556 LSSLTSDTLYMVRMAAYTDEGGKDGPEFTFTTPK 589
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 226 bits (578), Expect = 1e-67
Identities = 73/389 (18%), Positives = 133/389 (34%), Gaps = 51/389 (13%)
Query: 57 PSAPQSVSAIMVG-PRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARV---E 112
S P ++ + + W +I Y + ++ +
Sbjct: 2 LSPPTNLHLEANPDTGVLTVSWERS--TTPDITGYRITTTPTNGQQGNSLEEVVHADQSS 59
Query: 113 AIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLV 172
L P Y V + S P PP ++ +G ++ V
Sbjct: 60 CTFDNLSPGLEYNVSVYTVKDDKESVPIS---DTIIPA---VPPPTDLRFTNIGPDTMRV 113
Query: 173 TWEKPTVTNGEIKHYTLYYLEEDTSVERHVVT---PQLSYELTGLSHFTLYSIWVVAHNG 229
TW P + ++ ++ + Y + ++ + LT L T Y + V +
Sbjct: 114 TWAPP--PSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYE 171
Query: 230 NGAGTTSQELSVQTLSDKPSEPP---------ANSITVRWQPPSRRGQNGIITGYKLRYK 280
T ++ + P ANS TV W P ITGY++R+
Sbjct: 172 QHEST-----PLRGRQKTGLDSPTGIDFSDITANSFTVHWIAP-----RATITGYRIRHH 221
Query: 281 KKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDL 340
+ + R +T L T Y + + A+N P
Sbjct: 222 PEHF-SGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQ--------- 271
Query: 341 GEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQI-LDVK 399
+ TV D+P L+ P+S+++SW PA VR + + +G+ + V++ +
Sbjct: 272 -QSTVSDVPRDLEVVAATPTSLLISWDAPAVT---VRYYRITYGETGGNSPVQEFTVPGS 327
Query: 400 QRSDEITGLEPNSDYVISLRAFNEMGDGP 428
+ + I+GL+P DY I++ A GD P
Sbjct: 328 KSTATISGLKPGVDYTITVYAVTGRGDSP 356
Score = 211 bits (539), Expect = 5e-62
Identities = 79/411 (19%), Positives = 145/411 (35%), Gaps = 56/411 (13%)
Query: 248 PSEPPAN----------SITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGD 297
P PP N +TV W+ + ITGY++ + ++ D
Sbjct: 1 PLSPPTNLHLEANPDTGVLTVSWERST----TPDITGYRITTTPTNGQQGNSLEEVVHAD 56
Query: 298 RRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPG 357
+ L+ Y + ++ + + S P L+
Sbjct: 57 QSSCTFDNLSPGLEYNVSVYTVKDDKESVPI---SDTII-------PAVPPPTDLRFTNI 106
Query: 358 GPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQI-LDVKQRSDEITGLEPNSDYVI 416
GP ++ V+W PP + F + + +E V ++ + + +T L P ++YV+
Sbjct: 107 GPDTMRVTWAPPPSIDL--TNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVV 164
Query: 417 SLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQ 476
S+ + E + LR R + P G+ ++ S + W
Sbjct: 165 SVSSVYEQHEST----PLRGRQKTGLD------SPTGIDFSDITANSFTVHW-------- 206
Query: 477 FQQHGEEGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKES 536
Y +R+ + PR + + S+ + +L P T+Y ++ + ++ES
Sbjct: 207 -IAPRATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREES 265
Query: 537 EWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPN 596
Q++ + PRDL VV P+ + ++W P + Y I Y
Sbjct: 266 PLL-----IGQQSTVSDVPRDLEVV--AATPTSLLISWDAP---AVTVRYYRITYGETGG 315
Query: 597 TDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTA 647
E +V G K + + GL+PG Y + A G SP SS
Sbjct: 316 NSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPISINY 366
Score = 191 bits (488), Expect = 9e-55
Identities = 80/408 (19%), Positives = 146/408 (35%), Gaps = 59/408 (14%)
Query: 154 PSPPLNVNI-PVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEED----TSVERHVVTPQLS 208
SPP N+++ T L V+WE+ T +I Y + + S+E V Q S
Sbjct: 2 LSPPTNLHLEANPDTGVLTVSWERST--TPDITGYRITTTPTNGQQGNSLEEVVHADQSS 59
Query: 209 YELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPAN---------SITVR 259
LS Y++ V + S +S + P PP + ++ V
Sbjct: 60 CTFDNLSPGLEYNVSVYTVKDDK---ESVPISDTIIPAVP--PPTDLRFTNIGPDTMRVT 114
Query: 260 WQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAM 319
W PP + +T + +RY ++D E ++ + V+T L T Y + + ++
Sbjct: 115 WAPP----PSIDLTNFLVRYSPVKNEEDVAE-LSISPSDNAVVLTNLLPGTEYVVSVSSV 169
Query: 320 NVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGF 379
+ T D P + +S V W P + G+
Sbjct: 170 YEQHESTPLRGR----------QKTGLDSPTGIDFSDITANSFTVHWIAPRAT---ITGY 216
Query: 380 TLGWG-KGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRN 438
+ + + + + S +T L P ++YV+S+ A N + P + ++
Sbjct: 217 RIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPL---LIGQQS 273
Query: 439 EPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGAS 498
P L+ +P S+ ISW P R+Y + Y G S
Sbjct: 274 TVSD-------VPRDLEVVAATPTSLLISW---DAP------AVTVRYYRITYGETGGNS 317
Query: 499 NPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTT 546
+ + + ++ I+ L+P Y TV V + +S S ++
Sbjct: 318 PVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPISIN 365
Score = 178 bits (454), Expect = 4e-50
Identities = 54/289 (18%), Positives = 95/289 (32%), Gaps = 34/289 (11%)
Query: 53 TLTLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYN--ATAR 110
+ P + +GP ++ + W PP P ++ + V Y +E + A + +
Sbjct: 91 IIPAVPPPTDLRFTNIGPDTMRVTWAPP--PSIDLTNFLVRYSPVKNEEDVAELSISPSD 148
Query: 111 VEAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSL 170
++ L P T Y V + + P ++ + +S
Sbjct: 149 NAVVLTNLLPGTEYVVSVSSVYEQHES------TPLRGRQKTGLDSPTGIDFSDITANSF 202
Query: 171 LVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVT---PQLSYELTGLSHFTLYSIWVVAH 227
V W P I Y + + E S + S LT L+ T Y + +VA
Sbjct: 203 TVHWIAP---RATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVAL 259
Query: 228 NGNGAGTTSQELSVQTLSDKPSEPP--------ANSITVRWQPPSRRGQNGIITGYKLRY 279
NG L + S P S+ + W P + Y++ Y
Sbjct: 260 NGREES----PLLIGQQSTVSDVPRDLEVVAATPTSLLISWDAP-----AVTVRYYRITY 310
Query: 280 KKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPAT 328
+ + T G + I+GL Y I ++A+ G PA+
Sbjct: 311 GETG-GNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPAS 358
Score = 106 bits (265), Expect = 8e-25
Identities = 39/201 (19%), Positives = 67/201 (33%), Gaps = 19/201 (9%)
Query: 450 PPMGLK-SEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKY-INA 507
PP L + +SW + Y + T G + ++A
Sbjct: 4 PPTNLHLEANPDTGVLTVSW---ERST-----TPDITGYRITTTPTNGQQGNSLEEVVHA 55
Query: 508 NITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDP 567
+ +S ++L P +Y +V V+ KES T A P P DL + P
Sbjct: 56 DQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISD---TIIPAVPP--PTDLRFTNI--GP 108
Query: 568 SLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKI 627
+ + W PP + ++ + + YS N + E S+ + + L PG Y +
Sbjct: 109 DTMRVTWAPPP--SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSV 166
Query: 628 KARNSAGSSPYSSTVTWTTAS 648
+ S T
Sbjct: 167 SSVYEQHESTPLRGRQKTGLD 187
Score = 64.9 bits (158), Expect = 3e-11
Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 5/89 (5%)
Query: 55 TLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSER--ERAYNATARVE 112
T+ P+ + + P S+ + W P + Y + Y G + ++
Sbjct: 274 TVSDVPRDLEVVAATPTSLLISWDAPA---VTVRYYRITYGETGGNSPVQEFTVPGSKST 330
Query: 113 AIIQGLHPNTSYTFRVVAYNALGAGLASS 141
A I GL P YT V A G ASS
Sbjct: 331 ATISGLKPGVDYTITVYAVTGRGDSPASS 359
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III
domain, oncofetal splice VARI extra-domain B, EIIIB,
ED-B, angiogenesis, integrin; 2.40A {Homo sapiens}
Length = 375
Score = 216 bits (551), Expect = 1e-63
Identities = 62/401 (15%), Positives = 121/401 (30%), Gaps = 44/401 (10%)
Query: 57 PSAPQSVSAIMVG-PRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARV---E 112
S P ++ + + W +I Y + ++ +
Sbjct: 3 LSPPTNLHLEANPDTGVLTVSWERS--TTPDITGYRITTTPTNGQQGNSLEEVVHADQSS 60
Query: 113 AIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLV 172
L P Y V + S PE +++ + SS+ +
Sbjct: 61 CTFDNLSPGLEYNVSVYTVKDDKESVPIS---DTIIPE---VPQLTDLSFVDITDSSIGL 114
Query: 173 TWEKPTVTNGEIKHYTLYYLEEDTSVERHVVT---PQLSYELTGLSHFTLYSIWVVAHNG 229
W + I Y + + + Y +TGL Y I V+
Sbjct: 115 RWTPLN--SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLIN 172
Query: 230 NGAGTTSQELSVQTLSDKPSEPPA-----NSITVRWQPPSRRGQNGIITGYKLRYKKKDV 284
G + L+ QT P++ +++ V W PP + +T + +RY
Sbjct: 173 GGESAPT-TLTQQTAVPPPTDLRFTNIGPDTMRVTWAPP----PSIDLTNFLVRYSPVKN 227
Query: 285 KKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSG-PATDWFSAETFSQDLGEF 343
++D ++ + V+T L T Y + + ++ P
Sbjct: 228 EEDV-AELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQK----------- 275
Query: 344 TVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWG-KGVPDEFVKQILDVKQRS 402
T D P + +S V W P + G+ + + + + + S
Sbjct: 276 TGLDSPTGIDFSDITANSFTVHWIAPRAT---ITGYRIRHHPEHFSGRPREDRVPHSRNS 332
Query: 403 DEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQ 443
+T L P ++YV+S+ A N + P T +
Sbjct: 333 ITLTNLTPGTEYVVSIVALNGREESPLLIGQQSTVSAHHHH 373
Score = 212 bits (541), Expect = 3e-62
Identities = 78/411 (18%), Positives = 142/411 (34%), Gaps = 55/411 (13%)
Query: 154 PSPPLNVNI-PVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEED----TSVERHVVTPQLS 208
SPP N+++ T L V+WE+ T +I Y + + S+E V Q S
Sbjct: 3 LSPPTNLHLEANPDTGVLTVSWERST--TPDITGYRITTTPTNGQQGNSLEEVVHADQSS 60
Query: 209 YELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPP-------ANSITVRWQ 261
LS Y++ V + S +S + + P +SI +RW
Sbjct: 61 CTFDNLSPGLEYNVSVYTVKDDK---ESVPISDTIIPEVPQLTDLSFVDITDSSIGLRWT 117
Query: 262 PPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNV 321
P + I GY++ + Y +TGL Y I + +
Sbjct: 118 PL----NSSTIIGYRITVVAAG-EGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLIN 172
Query: 322 NGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTL 381
G T + T P L+ GP ++ V+W PP + F +
Sbjct: 173 GGESAPTTLT----------QQTAVPPPTDLRFTNIGPDTMRVTWAPPPSIDL--TNFLV 220
Query: 382 GWGKGVPDEFVKQI-LDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEP 440
+ +E V ++ + + +T L P ++YV+S+ + E + +T
Sbjct: 221 RYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKT---G 277
Query: 441 PPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNP 500
P G+ ++ S + W Y +R+ + P
Sbjct: 278 LD-------SPTGIDFSDITANSFTVHW---------IAPRATITGYRIRHHPEHFSGRP 321
Query: 501 RYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAP 551
R + + S+ + +L P T+Y ++ + ++ES I +T A
Sbjct: 322 REDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLL-IGQQSTVSAHH 371
Score = 208 bits (532), Expect = 6e-61
Identities = 82/413 (19%), Positives = 146/413 (35%), Gaps = 57/413 (13%)
Query: 248 PSEPPAN----------SITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGD 297
P PP N +TV W+ + ITGY++ + ++ D
Sbjct: 2 PLSPPTNLHLEANPDTGVLTVSWERST----TPDITGYRITTTPTNGQQGNSLEEVVHAD 57
Query: 298 RRLYVITGLNKSTTYQIKLWAMNVNG-SGPATDWFSAETFSQDLGEFTVPDIPASLKARP 356
+ L+ Y + ++ + + S P +D L
Sbjct: 58 QSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTII-----------PEVPQLTDLSFVD 106
Query: 357 GGPSSIIVSWTPPADQSIMVRGFTLGW-GKGVPDEFVKQILDVKQRSDEITGLEPNSDYV 415
SSI + WTP +I G+ + G + +D +TGLEP DY
Sbjct: 107 ITDSSIGLRWTPLNSSTI--IGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYD 164
Query: 416 ISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPD 475
IS+ G+ + T+ P PP L+ + P +MR++W P
Sbjct: 165 ISVITLINGGESA---PTTLTQQTAVP-------PPTDLRFTNIGPDTMRVTW---APPP 211
Query: 476 QFQQHGEEGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKE 535
+ ++LVRY+ + + I+ + +V + +L P T+Y +V V + E
Sbjct: 212 -----SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHE 266
Query: 536 SEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDP 595
S ++ +P + + + ++W P I+GY I + +
Sbjct: 267 STPL-----RGRQKTGLDSPTGIDFS--DITANSFTVHWIAP---RATITGYRIRHHPEH 316
Query: 596 NTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTAS 648
+ + E+ V + S + L PG Y I A N SP T ++
Sbjct: 317 FSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQSTVSA 369
Score = 166 bits (423), Expect = 1e-45
Identities = 53/286 (18%), Positives = 96/286 (33%), Gaps = 27/286 (9%)
Query: 53 TLTLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYN--ATAR 110
+ +S + + S+ LRW P I+ Y + G + ++
Sbjct: 92 IIPEVPQLTDLSFVDITDSSIGLRWTPL--NSSTIIGYRITVVAAGEGIPIFEDFVDSSV 149
Query: 111 VEAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSL 170
+ GL P Y V+ G + T + PP ++ +G ++
Sbjct: 150 GYYTVTGLEPGIDYDISVITLINGGESAPT------TLTQQTAVPPPTDLRFTNIGPDTM 203
Query: 171 LVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVT---PQLSYELTGLSHFTLYSIWVVAH 227
VTW P + ++ ++ + Y + ++ + LT L T Y + V +
Sbjct: 204 RVTWAPP--PSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSV 261
Query: 228 NGNGAGTTSQELSVQTLSDKPSEPPA-----NSITVRWQPPSRRGQNGIITGYKLRYKKK 282
T + +T D P+ NS TV W P ITGY++R+ +
Sbjct: 262 YEQHESTPLRG-RQKTGLDSPTGIDFSDITANSFTVHWIAP-----RATITGYRIRHHPE 315
Query: 283 DVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPAT 328
+ R +T L T Y + + A+N P
Sbjct: 316 H-FSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLL 360
Score = 63.7 bits (155), Expect = 8e-11
Identities = 19/93 (20%), Positives = 29/93 (31%), Gaps = 7/93 (7%)
Query: 53 TLTLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKRE---GSERERAYNATA 109
T +P + + S + W+ PR I Y + + E G RE +
Sbjct: 274 QKTGLDSPTGIDFSDITANSFTVHWIA---PRATITGYRIRHHPEHFSGRPREDRVPHSR 330
Query: 110 RVEAIIQGLHPNTSYTFRVVAYNALGAGLASSA 142
+ L P T Y +VA N
Sbjct: 331 N-SITLTNLTPGTEYVVSIVALNGREESPLLIG 362
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 219 bits (559), Expect = 1e-61
Identities = 84/477 (17%), Positives = 139/477 (29%), Gaps = 83/477 (17%)
Query: 46 SIEAINETLTLPSAPQSVSAIMVGPRSVALRWLPPTL-PRGEILVYCVLYKREGSERERA 104
S A P VG + ++ ++ G I+ V Y
Sbjct: 251 SNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDR 310
Query: 105 YNATARVEAIIQGLHPNTSYTFRVVAYNA--LGAGLASSALPVKTEPEDHVPSPPLNVNI 162
+ I L P+T Y V+ G G AL +T P + +
Sbjct: 311 QPVDST-SYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRT-KCADPMRGPRKLEV 368
Query: 163 PVVGTSSLLVTWEKP--TVTNGEIKHYTLYYLEEDTSVER-------HVVTPQLSYELTG 213
V + + + WE VT + T++Y + E+ + +T
Sbjct: 369 VEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITN 428
Query: 214 LSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPAN---------SITVRWQPPS 264
LS +T S+ ++ N G SQEL VQT D P P I ++W+ P+
Sbjct: 429 LSPYTNVSVKLILMNPEGRK-ESQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPT 487
Query: 265 RRGQNGIITGYKLRYKKKD------VKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWA 318
+ G+IT Y++ YK ++ V+ G+ ++ GL TTY + A
Sbjct: 488 Q--TYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRA 545
Query: 319 MNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPS--SIIVSWTPPADQSIMV 376
G GP T + + P +PA P + ++ V P + V
Sbjct: 546 STAKGFGPPATN-QFTT------KISAPSMPAYELETPLNQTDNTVTVMLKPAHSRGAPV 598
Query: 377 RGFTLGWGKGVPDEFVKQILDVKQRSDEIT------------------------------ 406
+ + + P K +K I
Sbjct: 599 SVYQIVVEEERPRRTKKTTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTI 658
Query: 407 ------------GLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPP 451
L P Y I +A + + P
Sbjct: 659 GDNKTYNGYWNTPLLPYKSYRIYFQAASRANGETKIDCVQVATKGAATPKPVPEPEK 715
Score = 216 bits (552), Expect = 1e-60
Identities = 80/510 (15%), Positives = 145/510 (28%), Gaps = 81/510 (15%)
Query: 115 IQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTW 174
+ + +R + G G+++ A V EP P P + VG + L +
Sbjct: 227 VVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEP----PVPIAPPQLASVGATYLWIQL 282
Query: 175 EKPTVT-NGEIKHYTLYYLEEDTSVERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAG 233
++ +G I + Y S SY++ L T Y I V+ G
Sbjct: 283 NANSINGDGPIVAREVEYCTASGSWNDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGG 342
Query: 234 T--TSQELSVQTLSDKPSEPPAN---------SITVRWQPPSRRGQNGIITGYKLRYKKK 282
T L +T P P IT+RW+P + Y +
Sbjct: 343 TGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQ 402
Query: 283 DVKKDKGE---TVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQD 339
+++ + T + IT L+ T +KL MN G SQ+
Sbjct: 403 VGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKE----------SQE 452
Query: 340 LGEFTVPDIPAS----LKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGK--------GV 387
L T D+P + I + W P ++ + + + +
Sbjct: 453 LIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGVITLYEITYKAVSSFDPEIDL 512
Query: 388 PDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQAPKV 447
++ + + GL P + Y ++RA G GP T+ P
Sbjct: 513 SNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATNQFTTKISAPSMPAYE 572
Query: 448 LIPPMGLKSEVLSPYSMRISW----------------IDTTLPDQFQQHGEEGRHYLVRY 491
L P+ + ++ + ++ P + ++ E + Y V
Sbjct: 573 LETPLNQ-----TDNTVTVMLKPAHSRGAPVSVYQIVVEEERPRRTKKTTEILKCYPVPI 627
Query: 492 THLLGASNPRYKYINANITSVQIND-------------------LRPSTQYEFTVKVVRA 532
+ Y A + + L P Y +
Sbjct: 628 HFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASR 687
Query: 533 KKESEWSMIVLNTTQEAAPASAPRDLTVVS 562
V T+ AA + +
Sbjct: 688 ANGETKIDCVQVATKGAATPKPVPEPEKQT 717
Score = 186 bits (473), Expect = 6e-50
Identities = 100/624 (16%), Positives = 164/624 (26%), Gaps = 93/624 (14%)
Query: 110 RVEAIIQGLHPN-TSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTS 168
R E I PN F V+ G LA + V P P N+ V
Sbjct: 122 RAELAISTFWPNFYQVIFEVITSGHQGY-LAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQ 180
Query: 169 SLLVTWEKPTVTNGEIKHYTLYY------LEEDTSVERHVVTPQLSYELTGLSHFTLYSI 222
T + + L+E + T Y
Sbjct: 181 FATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYR- 239
Query: 223 WVVAHNGNGAGTTSQELSVQTLSDKPSEPP------ANSITVRWQPPSRRGQNGIITGYK 276
+ G G ++ V P PP A + ++ S G +G I +
Sbjct: 240 -CMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSING-DGPIVARE 297
Query: 277 LRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETF 336
+ Y + + V + Y I L+ T Y+I + G A
Sbjct: 298 VEYCTASGSWNDRQPVDS----TSYKIGHLDPDTEYEISVLLTRPGEGGTG-SPGPALRT 352
Query: 337 SQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPAD--QSIMVRGFTLGW-----GKGVPD 389
P L+ I + W P T+ + G+
Sbjct: 353 RTK--CADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVR 410
Query: 390 EFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLI 449
E V + IT L P ++ + L N G + ++T + P
Sbjct: 411 EEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKESQELIVQTDEDLPGA------ 464
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRY-------THLLGASNPRY 502
P + + W P Q Y + Y + ++
Sbjct: 465 VPTESIQGSTFEEKIFLQW---REP---TQTYGVITLYEITYKAVSSFDPEIDLSNQSGR 518
Query: 503 KYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVS 562
N T L P T Y FT++ AK + TT+ +AP+ +L
Sbjct: 519 VSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATNQF-TTKISAPSMPAYELETPL 577
Query: 563 KEGDPSLVNLNWQPPKSANGQISGYTILYSSD---------------------------- 594
+ D + V + +P S +S Y I+ +
Sbjct: 578 NQTDNT-VTVMLKPAHSRGAPVSVYQIVVEEERPRRTKKTTEILKCYPVPIHFQNASLLN 636
Query: 595 ----------PNTDQWIEESVVGDKMSTN---VRGLEPGRIYYFKIKARNSAGSSPYSST 641
++ Q + +GD + N L P + Y +A + A
Sbjct: 637 SQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRANGETKIDC 696
Query: 642 VTWTTASDMQEAGGIPNSNQVSNT 665
V T Q +T
Sbjct: 697 VQVATKGAATPKPVPEPEKQTDHT 720
Score = 161 bits (407), Expect = 2e-41
Identities = 77/506 (15%), Positives = 149/506 (29%), Gaps = 50/506 (9%)
Query: 158 LNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTPQLSYELTGLSHF 217
LNV + V W L + Q+ +E+ H
Sbjct: 94 LNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFY------QVIFEVITSGHQ 147
Query: 218 TLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPANSITVRWQPPSRRGQNGIITGYKL 277
+I V G+ T L +Q + + + + + +
Sbjct: 148 GYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAG------DRLWLQ 201
Query: 278 RYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFS 337
+D + + ++ + + K + + G G +
Sbjct: 202 GIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISN--------Y 253
Query: 338 QDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIM-VRGFTLGWGKGVPDEFVKQIL 396
+L P A + G + + + + + + +
Sbjct: 254 AELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCT--ASGSWNDRQ 311
Query: 397 DVKQRSDEITGLEPNSDYVISLRAFNEMGDG---PQKYESLRTRNEPPPQAPKVLIPPMG 453
V S +I L+P+++Y IS+ G P RT+ P + P
Sbjct: 312 PVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMR------GPRK 365
Query: 454 LKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYI----NANI 509
L+ + + I W + V Y + +G + + +
Sbjct: 366 LEVVEVKSRQITIRW---EPFGYNVTRCH-SYNLTVHYCYQVGGQEQVREEVSWDTENSH 421
Query: 510 TSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSL 569
I +L P T + ++ + S ++ T E P + P + S
Sbjct: 422 PQHTITNLSPYTNVSVKLILMNPEGRK-ESQELIVQTDEDLPGAVPTESIQGST--FEEK 478
Query: 570 VNLNWQPPKSANGQISGYTILYSSDPNTDQWIE-------ESVVGDKMSTNVRGLEPGRI 622
+ L W+ P G I+ Y I Y + + D I+ S +G++ GL PG
Sbjct: 479 IFLQWREPTQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTT 538
Query: 623 YYFKIKARNSAGSSPYSSTVTWTTAS 648
Y F I+A + G P ++ T S
Sbjct: 539 YSFTIRASTAKGFGPPATNQFTTKIS 564
Score = 111 bits (279), Expect = 1e-25
Identities = 40/256 (15%), Positives = 65/256 (25%), Gaps = 56/256 (21%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGS---------ERERAYNA 107
+ P + L+W PT G I +Y + YK S + R
Sbjct: 463 GAVPTESIQGSTFEEKIFLQWREPTQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKL 522
Query: 108 TARVEAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGT 167
+ GL+P T+Y+F + A A G G + T P + P+ T
Sbjct: 523 GNETHFLFFGLYPGTTYSFTIRASTAKGFG-PPATNQFTT-KISAPSMPAYELETPLNQT 580
Query: 168 S-SLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTPQLS------------------ 208
++ V + + Y + EE +
Sbjct: 581 DNTVTVMLKPAHSRGAPVSVYQIVVEEERPRRTKKTTEILKCYPVPIHFQNASLLNSQYY 640
Query: 209 --------------------------YELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQ 242
Y T L + Y I+ A + T + V
Sbjct: 641 FAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRANGETKIDCVQVA 700
Query: 243 TLSDKPSEPPANSITV 258
T +P
Sbjct: 701 TKGAATPKPVPEPEKQ 716
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 216 bits (550), Expect = 1e-59
Identities = 81/516 (15%), Positives = 153/516 (29%), Gaps = 64/516 (12%)
Query: 164 VVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTPQLSYELTGLSHFTLYSIW 223
+ +L W+ + N I L++ + + G ++
Sbjct: 402 ALDNQNLRQLWD-WSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALK 460
Query: 224 VVAHNGNGAGTTSQELSVQTLSDKPSEPPANSITVRWQPPSRRGQNGIITGYKLRYKKK- 282
+ + + I +RW+P ++ G+ L YK+
Sbjct: 461 TNGDQASCENELLK--------FSYIRTSFDKILLRWEPYWPPDFRDLL-GFMLFYKEAP 511
Query: 283 ---------------------DVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNV 321
D+ + + +++ GL T Y I + +
Sbjct: 512 YQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVT 571
Query: 322 NG-----SGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMV 376
G +D +T + P +P + S II+ W PP+D + +
Sbjct: 572 FSDERRTYGAKSDIIYVQTDAT------NPSVPLDPISVSNSSSQIILKWKPPSDPNGNI 625
Query: 377 RGFTLGWGKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESLRT 436
+ + W + D + + P+ + + + +YE
Sbjct: 626 THYLVFWERQAEDSELFE-----LDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAG 680
Query: 437 RNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLG 496
P+ ++ L S R ++ D F R L +
Sbjct: 681 ECCSCPKTDSQILKE-------LEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGN 733
Query: 497 ASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKE----SEWSMIVLNTTQEAAPA 552
R N S+ I+ LR T Y ++ S + + T EA
Sbjct: 734 NEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKAD 793
Query: 553 SAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYS--SDPNTDQWIEESVVGDKM 610
+T E ++V+L WQ PK NG I Y + Y D +
Sbjct: 794 DIVGPVTHEIFE--NNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALER 851
Query: 611 STNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTT 646
+RGL PG Y +I+A + AG+ ++ +
Sbjct: 852 GCRLRGLSPGN-YSVRIRATSLAGNGSWTEPTYFYV 886
Score = 189 bits (481), Expect = 1e-50
Identities = 72/449 (16%), Positives = 144/449 (32%), Gaps = 51/449 (11%)
Query: 24 PNQYHLTSTTSMTASPLDTSTGSIEAINETLTLPSAPQSVSAIMVGPRSVALRWLPPTLP 83
++ H S T + + +++ + + + S I + LRW P P
Sbjct: 436 LSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPP 495
Query: 84 RGE-ILVYCVLYKR-------------------------EGSERERAYNATARVEAIIQG 117
+L + + YK + R + +++G
Sbjct: 496 DFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRG 555
Query: 118 LHPNTSYTFRVVAYNALG-----AGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLV 172
L P T Y V G S + V+T+ PS PL+ +S +++
Sbjct: 556 LKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDAT--NPSVPLDPISVSNSSSQIIL 613
Query: 173 TWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGA 232
W+ P+ NG I HY +++ + E + L +S + +
Sbjct: 614 KWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGLKLPSRT---WSPPFESEDSQKH 670
Query: 233 GTTSQELSVQTLSDKPSEPP-------ANSITVRWQPPSRRGQNGIITGYKLRYKKKDVK 285
+ E S P +S ++ K R
Sbjct: 671 NQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGN 730
Query: 286 KDKGE---TVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLGE 342
E ++ VI+GL T Y+I+L A N + +A ++ + E
Sbjct: 731 AGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSV-AAYVSARTMPE 789
Query: 343 FTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEF---VKQILDVK 399
DI + + + + W P + + ++ + + + + +E +
Sbjct: 790 AKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFAL 849
Query: 400 QRSDEITGLEPNSDYVISLRAFNEMGDGP 428
+R + GL P + Y + +RA + G+G
Sbjct: 850 ERGCRLRGLSPGN-YSVRIRATSLAGNGS 877
Score = 168 bits (425), Expect = 2e-43
Identities = 61/366 (16%), Positives = 124/366 (33%), Gaps = 48/366 (13%)
Query: 13 ISDMDPSSSTPPNQYHLTSTTSMTASPLDTSTGSIEAINETLTL---PSAPQSVSAIMVG 69
+ + P + QY + T +T S + G+ I T PS P ++
Sbjct: 553 MRGLKPWT-----QYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNS 607
Query: 70 PRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAIIQGLHPNTSYTFRVV 129
+ L+W PP+ P G I Y V ++R+ + E + P+ +++
Sbjct: 608 SSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYC----LKGLKLPSRTWSPPFE 663
Query: 130 AYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPT-------VTNG 182
+ ++ + P + + + SS T+E +
Sbjct: 664 SEDSQKHNQSEYEDSAGECCS--CPKTDSQI-LKELEESSFRKTFEDYLHNVVFVPRPSR 720
Query: 183 EIKHYTLYYLEEDTS--VERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELS 240
+ + + V + S ++GL HFT Y I + A N + +
Sbjct: 721 KRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAA 780
Query: 241 VQTLSDKPSEPP-------------ANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKD 287
+ P N + + WQ P NG+I Y++ Y++ ++
Sbjct: 781 YVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEP--NGLIVLYEVSYRRYGDEEL 838
Query: 288 KG-ETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVP 346
+T R + GL+ Y +++ A ++ G+G T+
Sbjct: 839 HLCDTRKHFALERGCRLRGLSP-GNYSVRIRATSLAGNGSWTEPTYFYV-------TDYL 890
Query: 347 DIPASL 352
D+P+++
Sbjct: 891 DVPSNI 896
Score = 160 bits (404), Expect = 9e-41
Identities = 68/461 (14%), Positives = 130/461 (28%), Gaps = 73/461 (15%)
Query: 144 PVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGE-IKHYTLYYLEEDT------ 196
+ + L + +L+ WE + + + L+Y E
Sbjct: 459 LKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEF 518
Query: 197 --------------------SVERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNG----- 231
+ + GL +T Y+I+V
Sbjct: 519 DGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRT 578
Query: 232 AGTTSQELSVQTLSDKPSEPP--------ANSITVRWQPPSRRGQNGIITGYKLRYKKKD 283
G S + VQT + PS P ++ I ++W+PPS NG IT Y + ++++
Sbjct: 579 YGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSD--PNGNITHYLVFWERQA 636
Query: 284 VKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLGEF 343
+ E +L S T+ + + + SA
Sbjct: 637 EDSELFELDYCLKGLKLP-------SRTWSPPFESEDSQKHNQSEYEDSAGECC------ 683
Query: 344 TVPDIPASLKARPGGPSSIIVSWTPPADQSI-------MVRGFTLGWGKGVPDEFVKQIL 396
+ P + + + SS ++ + R G +E
Sbjct: 684 SCPKTDSQIL-KELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEK 742
Query: 397 DVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPPMGLKS 456
V + S I+GL + Y I L+A N+ + + P+A I +
Sbjct: 743 VVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGP-VTH 801
Query: 457 EVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLG--ASNPRYKYINANITSVQI 514
E+ + + W P + +G Y V Y + A ++
Sbjct: 802 EIFENNVVHLMW---QEPKE--PNGLI-VLYEVSYRRYGDEELHLCDTRKHFALERGCRL 855
Query: 515 NDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAP 555
L P Y ++ W+ + +
Sbjct: 856 RGLSP-GNYSVRIRATSLAGNGSWTEPTYFYVTDYLDVPSN 895
Score = 102 bits (254), Expect = 2e-22
Identities = 61/435 (14%), Positives = 114/435 (26%), Gaps = 54/435 (12%)
Query: 266 RGQNGIITGYKLRYKKKDVKKDKGETVTTAGD-RRLYVITGLNKSTTYQIKLWAMNVNGS 324
RG+ I Y + + + + N V+G+
Sbjct: 389 RGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGT 448
Query: 325 GPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPA-DQSIMVRGFTL-- 381
+ + + + + I++ W P + GF L
Sbjct: 449 KGRQERNDI-ALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFY 507
Query: 382 --------------------GWGKG--VPDEFVKQILDVKQRSDEITGLEPNSDYVISLR 419
W P + GL+P + Y I ++
Sbjct: 508 KEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVK 567
Query: 420 AFNEMGDGPQKY--ESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQF 477
D + Y +S + P P+ S S + + W P
Sbjct: 568 TLVTFSDERRTYGAKSDIIYVQTDATNPS---VPLDPISVSNSSSQIILKW---KPPSD- 620
Query: 478 QQHGEEGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESE 537
+G HYLV + S PS + + ++K ++
Sbjct: 621 -PNGNI-THYLVFWERQAEDSELFELDYCLK------GLKLPSRTWSPPFESEDSQKHNQ 672
Query: 538 WSMIVLNTTQEAAPASAPRDL-----TVVSKEGDPSLVNLNWQPPKSANGQISGYTILYS 592
+ P + + L + K + L N+ + P S + + +
Sbjct: 673 SEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPS--RKRRSLGDVGN 730
Query: 593 SDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASDMQE 652
+ N + E V +K S + GL Y +++A N S + +A M E
Sbjct: 731 AGNNEEHRPFE-KVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPE 789
Query: 653 --AGGIPNSNQVSNT 665
A I
Sbjct: 790 AKADDIVGPVTHEIF 804
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 210 bits (535), Expect = 1e-58
Identities = 85/491 (17%), Positives = 159/491 (32%), Gaps = 79/491 (16%)
Query: 230 NGAGTTSQELSVQTLSDKPSEPP--------ANSITVRWQPPSRRGQNGI--ITGYKLRY 279
NG G T Q + + V+W + + + Y
Sbjct: 143 NGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVIYVVQRRWNY 202
Query: 280 KKKDVKKDKG--ETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFS 337
+ D +TV D R +T + S YQ ++ A+NV+G+ T S
Sbjct: 203 GIHPSEDDATHWQTVAQTTDER-VQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSS 261
Query: 338 QDLGEFTVPDIPASLKARP-----GGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDE-- 390
+D + P PA+L+ G ++ + W P + I V + + W V +
Sbjct: 262 KDP---SAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPVHHYKVFWSWMVSSKSL 318
Query: 391 -----FVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYE--SLRTRNEPPPQ 443
++ D Q S + L+P+ DYV+ L+A G K SL +
Sbjct: 319 VPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATN 378
Query: 444 APKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGE-------------EGRHYLVR 490
+ L+ + P+ R + F Q G+ Y VR
Sbjct: 379 NKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTEDPTVNRYHVR 438
Query: 491 Y----THLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTT 546
+ + + + + DL S +Y+ TV+ +R K S+ + T
Sbjct: 439 WFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTP 498
Query: 547 QEAAPA---------------------SAPRDLTVVS-KEGDPSLVNLNWQPPKSA-NGQ 583
+A + P +L+ + + +W+ K+
Sbjct: 499 PCSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKANLYQP 558
Query: 584 ISGYTILYS---------SDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAG 634
++G+ + ++ S PN+ + + D V L P +Y +++ G
Sbjct: 559 MTGFQVTWAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGG 618
Query: 635 SSPYSSTVTWT 645
P + T
Sbjct: 619 EGPATIKTFRT 629
Score = 182 bits (463), Expect = 5e-49
Identities = 65/503 (12%), Positives = 138/503 (27%), Gaps = 102/503 (20%)
Query: 43 STGSIEAINETLT---LPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGS 99
G + +TL + + + + ++W E ++Y V +
Sbjct: 144 GCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVIYVVQRRWNYG 203
Query: 100 ERERAYNATARVE--------AIIQGLHPNTSYTFRVVAYNALGAGLAS-SALPVKTEPE 150
+AT + + P+ Y FRV A N G + + ++ +
Sbjct: 204 IHPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKD 263
Query: 151 DHVPSPPLNVNIPVV-----GTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVE------ 199
P P N+ + G+ ++ + W+ P + + HY +++ +S
Sbjct: 264 PSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPVHHYKVFWSWMVSSKSLVPTKK 323
Query: 200 ---RHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPAN-- 254
+ Q S L L Y + + A G + +
Sbjct: 324 KRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQL 383
Query: 255 -----------------------------------SITVRWQPPSRRGQNGIITGYKLRY 279
+ V W+ + + Y +R+
Sbjct: 384 VKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTE----DPTVNRYHVRW 439
Query: 280 KKKDVKKDK---GETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETF 336
+ ++ E + ++ L+ S Y++ + + A F
Sbjct: 440 FPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPP 499
Query: 337 SQDLGEFTVPDIPASLKARP-------------------GGPSSIIVSWTPP-ADQSIMV 376
L + I +A + SW A+ +
Sbjct: 500 CSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKANLYQPM 559
Query: 377 RGFTLGWGKGVPDE----------FVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGD 426
GF + W + + QIL + L P++ Y + ++ G+
Sbjct: 560 TGFQVTWAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGE 619
Query: 427 GPQKYESLRTRNEPP--PQAPKV 447
GP ++ RT PP +
Sbjct: 620 GPATIKTFRTPELPPSSAHRSHL 642
Score = 181 bits (459), Expect = 2e-48
Identities = 73/540 (13%), Positives = 148/540 (27%), Gaps = 103/540 (19%)
Query: 137 GLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLE--- 193
G + KT + P + + + L V W + E Y +
Sbjct: 144 GCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVIYVVQRRWNYG 203
Query: 194 ------EDTSVERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDK 247
+ T + T +LT + Y V A N +G + S
Sbjct: 204 IHPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKD 263
Query: 248 PSEPPAN----------------SITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGET 291
PS PPA ++T+ W P + + YK+ + K T
Sbjct: 264 PSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEE--PDIPVHHYKVFWSWMVSSKSLVPT 321
Query: 292 V-----TTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVP 346
TT G + ++ L Y ++L A+ G + F+
Sbjct: 322 KKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKE 381
Query: 347 DIPASLK-----------------------ARPGGPSSIIVSWTPPADQSIMVRGFTLGW 383
+ + K G + V W D ++ + + W
Sbjct: 382 QLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTEDPTV--NRYHVRW 439
Query: 384 GKGVPDE-----FVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGP---------- 428
+ + L + Y ++++
Sbjct: 440 FPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPP 499
Query: 429 ------QKYESLRTRNEPPPQAPKVLIPPMGLKSEVL---SPYSMRISWIDTTLPDQFQQ 479
+ ++ + E KVL P L + + + SW +
Sbjct: 500 CSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFSW---KMAK--AN 554
Query: 480 HGEEGRHYLVRYTHLLGASNP---------RYKYINANITSVQINDLRPSTQYEFTVKVV 530
+ + V + + S + + + ++ + + +LRPST Y V+V+
Sbjct: 555 LYQPMTGFQVTWAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVL 614
Query: 531 RAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTIL 590
E ++ T + P S+ + + +++P G+ +L
Sbjct: 615 TPGGEGPATIKTFRTPE--LPPSSAHRSHLKHRHPH------HYKPSPERYGKPIPNPLL 666
Score = 141 bits (355), Expect = 4e-35
Identities = 63/401 (15%), Positives = 108/401 (26%), Gaps = 102/401 (25%)
Query: 57 PSAPQSVSAIMV-----GPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARV 111
P AP ++ G +V + W P P + Y V + S + R
Sbjct: 267 PPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPVHHYKVFWSWMVSSKSLVPTKKKRR 326
Query: 112 --------EAIIQGLHPNTSYTFRVVAYNALGAGLASSA----------------LPVKT 147
I++ L P+ Y + A G SA VKT
Sbjct: 327 KTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLVKT 386
Query: 148 EPEDH---------VPSPPLNVNIPVV--GTSSLLVTWEKPTVTNGEIKHYTLYYLEEDT 196
P+ PL V P G + V W+K + + Y + + E
Sbjct: 387 RKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKT--EDPTVNRYHVRWFPEAC 444
Query: 197 SVERH-------VVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSD--- 246
+ R +T + L LS Y + V
Sbjct: 445 AHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALK 504
Query: 247 ----------------------KPSEPPA--------NSITVRWQPPSRRGQNGIITGYK 276
KP A + W+ + +TG++
Sbjct: 505 GKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMA-KANLYQPMTGFQ 563
Query: 277 LRYKKKDVKKDKG--------ETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPAT 328
+ + + + + ++ D + + L ST Y++++ + G GPAT
Sbjct: 564 VTWAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPAT 623
Query: 329 DWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPP 369
F P++P S R + P
Sbjct: 624 IK-----------TFRTPELPPSSAHRSHLKHRHPHHYKPS 653
Score = 115 bits (287), Expect = 1e-26
Identities = 40/368 (10%), Positives = 103/368 (27%), Gaps = 53/368 (14%)
Query: 327 ATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKG 386
+ + L + L+ + V W+ + SI + +
Sbjct: 142 SNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVIYVVQRRWN 201
Query: 387 VPDEFVK-------QILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGP--QKYESLRTR 437
+ + ++T + P+ Y + A N G + R+
Sbjct: 202 YGIHPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSS 261
Query: 438 NEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGA 497
+P + ++ I W LP ++ HY V ++ ++ +
Sbjct: 262 KDPSAPPAPANLRLANSTVNSDGSVTVTIVW---DLP---EEPDIPVHHYKVFWSWMVSS 315
Query: 498 SNP------RYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAP 551
+ R K + SV + L+P Y ++ + ++ ++ +
Sbjct: 316 KSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTH 375
Query: 552 ASAPRDLTVVSKEGDPSL--------------------------VNLNWQPPKSANGQIS 585
A+ ++ V +++G V + W+ + + ++
Sbjct: 376 ATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTE--DPTVN 433
Query: 586 GYTILY----SSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSST 641
Y + + + T S + + ++ L Y ++ S +
Sbjct: 434 RYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAV 493
Query: 642 VTWTTASD 649
T
Sbjct: 494 FFTTPPCS 501
Score = 103 bits (258), Expect = 4e-23
Identities = 44/315 (13%), Positives = 81/315 (25%), Gaps = 55/315 (17%)
Query: 9 SLLAISDMDPSSSTPPNQYHLTSTTSMTASPLDTSTGSIEAINETLTL----PSAPQSVS 64
L AI+ + ++T T + I L P+ P V
Sbjct: 350 ELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVG 409
Query: 65 AIMV--GPRSVALRWLPPTLPRGEILVYCVLYKREG------SERERAYNATARVEAIIQ 116
A G V + W + Y V + E + E + T I+Q
Sbjct: 410 APFYQDGQLQVKVYWKKT--EDPTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIILQ 467
Query: 117 GLHPNTSYTFRVVAYNALGAGLASSALPVKT--------------------EPEDHVPSP 156
L + Y V A + V +
Sbjct: 468 DLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAK 527
Query: 157 PLNVNIPVV---GTSSLLVTWEKPTVT-NGEIKHYTLYYLEEDTSVERH----------- 201
P N++ + + +W+ + + + + E T ++
Sbjct: 528 PENLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQVTWAEVTTESRQNSLPNSIISQSQ 587
Query: 202 -VVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPA----NSI 256
+ + + L TLY + V G G + + +T PS +
Sbjct: 588 ILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPAT-IKTFRTPELPPSSAHRSHLKHRH 646
Query: 257 TVRWQPPSRRGQNGI 271
++P R I
Sbjct: 647 PHHYKPSPERYGKPI 661
Score = 103 bits (257), Expect = 5e-23
Identities = 38/235 (16%), Positives = 73/235 (31%), Gaps = 23/235 (9%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLG------ASNPRYK 503
P L+ L + + W E Y+V+ G +
Sbjct: 163 PRKELRFTELQSGQLEVKW------SSKFNISIEPVIYVVQRRWNYGIHPSEDDATHWQT 216
Query: 504 YINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPA--SAPRDLTVV 561
VQ+ D+RPS Y+F V V ++ + P+ AP +L +
Sbjct: 217 VAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLA 276
Query: 562 SKEGDPSL---VNLNWQPPKSANGQISGYTILYS------SDPNTDQWIEESVVGDKMST 612
+ + V + W P+ + + Y + +S S T + ++ G + S
Sbjct: 277 NSTVNSDGSVTVTIVWDLPEEPDIPVHHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQNSV 336
Query: 613 NVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASDMQEAGGIPNSNQVSNTMI 667
+ L+P Y +++A G + S + + I
Sbjct: 337 ILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLVKTRKGGI 391
Score = 66.9 bits (162), Expect = 1e-11
Identities = 20/129 (15%), Positives = 47/129 (36%), Gaps = 10/129 (7%)
Query: 544 NTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILY-------SSDPN 596
T + P ++L E + + W + + + Y + S+ +
Sbjct: 153 KTLYKGVPLKPRKELRF--TELQSGQLEVKWSSKFNISIEPVIYVVQRRWNYGIHPSEDD 210
Query: 597 TDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASDMQEAGGI 656
W + D+ + + P R Y F++ A N G+ +++ +S A
Sbjct: 211 ATHWQTVAQTTDE-RVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPA 269
Query: 657 PNSNQVSNT 665
P + +++N+
Sbjct: 270 PANLRLANS 278
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 183 bits (465), Expect = 2e-52
Identities = 69/317 (21%), Positives = 113/317 (35%), Gaps = 41/317 (12%)
Query: 133 ALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYL 192
A SS L V + P ++ V +SL W P N ++ Y +
Sbjct: 2 AHHHHHHSSGLEVLFQGP--AIPAPTDLKFTQVTPTSLSAQWTPP---NVQLTGYRVRVT 56
Query: 193 EEDTSVERHVVT---PQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPS 249
++ + + S ++GL T Y + V A +Q + +
Sbjct: 57 PKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTL---ENV 113
Query: 250 EPPAN---------SITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRL 300
PP +IT+ W+ ITG+++ + T D R
Sbjct: 114 SPPRRARVTDATETTITISWRTK-----TETITGFQVDAVPAN--GQTPIQRTIKPDVRS 166
Query: 301 YVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPS 360
Y ITGL T Y+I L+ +N N ++ T D P++L+ P+
Sbjct: 167 YTITGLQPGTDYKIYLYTLNDNARSSPVVIDAS----------TAIDAPSNLRFLATTPN 216
Query: 361 SIIVSWTPPADQSIMVRGFTLGWGK-GVPDEFVKQILDVKQRSDEITGLEPNSDYVISLR 419
S++VSW PP + + G+ + + K G P V ITGLEP ++Y I +
Sbjct: 217 SLLVSWQPPRAR---ITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVI 273
Query: 420 AFNEMGDGPQKYESLRT 436
A +T
Sbjct: 274 ALKNNQKSEPLIGRKKT 290
Score = 181 bits (460), Expect = 8e-52
Identities = 61/288 (21%), Positives = 98/288 (34%), Gaps = 26/288 (9%)
Query: 50 INETLTLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYN--A 107
+ AP + V P S++ +W PP ++ Y V + A
Sbjct: 14 VLFQGPAIPAPTDLKFTQVTPTSLSAQWTPPN---VQLTGYRVRVTPKEKTGPMKEINLA 70
Query: 108 TARVEAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGT 167
++ GL T Y V A + + E SPP +
Sbjct: 71 PDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLEN----VSPPRRARVTDATE 126
Query: 168 SSLLVTWEKPTVTNGEIKHYTLYYLEED--TSVERHVVTPQLSYELTGLSHFTLYSIWVV 225
+++ ++W I + + + + T ++R + SY +TGL T Y I++
Sbjct: 127 TTITISWRTK---TETITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLY 183
Query: 226 AHNGNGAGTTSQELSVQTLSDKPSEPPA-----NSITVRWQPPSRRGQNGIITGYKLRYK 280
N N + + T D PS NS+ V WQPP ITGY ++Y+
Sbjct: 184 TLNDNARSSPV-VIDASTAIDAPSNLRFLATTPNSLLVSWQPP-----RARITGYIIKYE 237
Query: 281 KKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPAT 328
K + ITGL T Y I + A+ N
Sbjct: 238 KPG-SPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEPL 284
Score = 144 bits (365), Expect = 9e-39
Identities = 59/303 (19%), Positives = 102/303 (33%), Gaps = 32/303 (10%)
Query: 344 TVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWG-KGVPDEFVKQILDVKQRS 402
P LK P+S+ WTPP Q + G+ + K + L S
Sbjct: 19 PAIPAPTDLKFTQVTPTSLSAQWTPPNVQ---LTGYRVRVTPKEKTGPMKEINLAPDSSS 75
Query: 403 DEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPY 462
++GL + Y +S+ A + + + T E PP + +
Sbjct: 76 VVVSGLMVATKYEVSVYALKDTLTSR-PAQGVVTTLENVS-------PPRRARVTDATET 127
Query: 463 SMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQ 522
++ ISW T + + V P + I ++ S I L+P T
Sbjct: 128 TITISW--RTKTETITG-------FQVDAVPA-NGQTPIQRTIKPDVRSYTITGLQPGTD 177
Query: 523 YEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANG 582
Y+ + + S + AP +L ++ P+ + ++WQPP
Sbjct: 178 YKIYLYTLNDNARSSPV-----VIDASTAIDAPSNLRFLAT--TPNSLLVSWQPP---RA 227
Query: 583 QISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTV 642
+I+GY I Y + + + + GLEPG Y + A + S
Sbjct: 228 RITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEPLIGR 287
Query: 643 TWT 645
T
Sbjct: 288 KKT 290
Score = 109 bits (275), Expect = 9e-27
Identities = 39/199 (19%), Positives = 72/199 (36%), Gaps = 18/199 (9%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANI 509
P LK ++P S+ W + Y VR T + + +
Sbjct: 23 APTDLKFTQVTPTSLSAQW---------TPPNVQLTGYRVRVTPKEKTGPMKEINLAPDS 73
Query: 510 TSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSL 569
+SV ++ L +T+YE +V ++ S + V+ T + +P PR V +
Sbjct: 74 SSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENVSP---PRRARVTDA--TETT 128
Query: 570 VNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKA 629
+ ++W+ I+G+ + N I+ ++ D S + GL+PG Y +
Sbjct: 129 ITISWRTK---TETITGFQVDAV-PANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYT 184
Query: 630 RNSAGSSPYSSTVTWTTAS 648
N S T
Sbjct: 185 LNDNARSSPVVIDASTAID 203
Score = 78.3 bits (193), Expect = 5e-16
Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 5/105 (4%)
Query: 543 LNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIE 602
L + AP DL P+ ++ W PP N Q++GY + + T E
Sbjct: 12 LEVLFQGPAIPAPTDLKFTQV--TPTSLSAQWTPP---NVQLTGYRVRVTPKEKTGPMKE 66
Query: 603 ESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTA 647
++ D S V GL Y + A +S + V T
Sbjct: 67 INLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLE 111
Score = 67.1 bits (164), Expect = 3e-12
Identities = 25/92 (27%), Positives = 34/92 (36%), Gaps = 5/92 (5%)
Query: 53 TLTLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERER--AYNATAR 110
T AP ++ + P S+ + W PP R I Y + Y++ GS
Sbjct: 198 ASTAIDAPSNLRFLATTPNSLLVSWQPP---RARITGYIIKYEKPGSPPREVVPRPRPGV 254
Query: 111 VEAIIQGLHPNTSYTFRVVAYNALGAGLASSA 142
EA I GL P T YT V+A
Sbjct: 255 TEATITGLEPGTEYTIYVIALKNNQKSEPLIG 286
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 182 bits (464), Expect = 3e-52
Identities = 57/295 (19%), Positives = 93/295 (31%), Gaps = 35/295 (11%)
Query: 57 PSAP-----QSVSAIMVGPRSVALRW--LPPTLPRGEILVYCVLYKREGSERERAYNATA 109
PS + + G R+V L W LPP G+IL Y V R S +
Sbjct: 4 PSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVNAT 63
Query: 110 RVEAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSS 169
++ + N Y + N +G A+ + P +++ +
Sbjct: 64 KLTVNL----TNDRYLATLTVRNLVGKSDAAVL--TIPACDFQATHPVMDLKA-FPKDNM 116
Query: 170 LLVTWEKPTVTNGEIKHYTLYYLE------EDTSVERHVVTPQLSYELTGLSHFTLYSIW 223
L V W P +K Y L + T ++ T +Y L+ Y I
Sbjct: 117 LWVEWTTP---RESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLIT 173
Query: 224 VVAHNGNGAGTTSQELSVQTLSDKPSEPP--------ANSITVRWQPPSRRGQNGIITGY 275
V +G G+ + PS+ P N + W QNG I Y
Sbjct: 174 VTPVYADGPGSPE-SIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNY 232
Query: 276 KLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDW 330
+ Y+ V Y ++ L T Y +++ A G ++
Sbjct: 233 TIFYRTII---GNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEF 284
Score = 127 bits (321), Expect = 7e-33
Identities = 48/319 (15%), Positives = 94/319 (29%), Gaps = 47/319 (14%)
Query: 246 DKPSEPPAN-------------SITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETV 292
D+PS+ P+ ++ + W+ NG I Y++ +
Sbjct: 2 DRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVN 61
Query: 293 TTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASL 352
T +T + Y L N+ G A + T P
Sbjct: 62 ATK-------LTVNLTNDRYLATLTVRNLVGKSDA----AVLTIPA---CDFQATHPVMD 107
Query: 353 KARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEF----VKQILDVKQRSDEITGL 408
+ + V WT P + V+ + L W +Q R+ L
Sbjct: 108 LKAFPKDNMLWVEWTTPRE---SVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNL 164
Query: 409 EPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISW 468
+ Y+I++ G G + + PP + P V +++ + + W
Sbjct: 165 AESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTV-------RTKKVGKNEAVLEW 217
Query: 469 IDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVK 528
Q+G R+Y + Y N ++++ T ++ L T Y +
Sbjct: 218 DQ---LPVDVQNGFI-RNYTIFYRT--IIGNETAVNVDSSHTEYTLSSLTSDTLYMVRMA 271
Query: 529 VVRAKKESEWSMIVLNTTQ 547
+ + T +
Sbjct: 272 AYTDEGGKDGPEFTFTTPK 290
Score = 126 bits (319), Expect = 1e-32
Identities = 46/309 (14%), Positives = 84/309 (27%), Gaps = 36/309 (11%)
Query: 346 PDIPASLK-ARPGGPSSIIVSW--TPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRS 402
P + + G ++ + W PP + + + + + + Q V
Sbjct: 8 PSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHL---QNYTVNATK 64
Query: 403 DEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPY 462
+T N Y+ +L N +G ++ + L
Sbjct: 65 --LTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDL-------KAFPKDN 115
Query: 463 SMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYIN---ANITSVQINDLRP 519
+ + W E + Y++ + L + + + +L
Sbjct: 116 MLWVEW---------TTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAE 166
Query: 520 STQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPP-- 577
S Y TV V A I ++A P S + + L W
Sbjct: 167 SKCYLITVTPVYADGPGSPESIKA-YLKQAPP-SKGPTVRTKKV--GKNEAVLEWDQLPV 222
Query: 578 KSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSP 637
NG I YTI Y +V + L +Y ++ A G
Sbjct: 223 DVQNGFIRNYTIFYR--TIIGNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKD 280
Query: 638 YSSTVTWTT 646
T+TT
Sbjct: 281 -GPEFTFTT 288
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Length = 283
Score = 180 bits (458), Expect = 1e-51
Identities = 54/295 (18%), Positives = 90/295 (30%), Gaps = 30/295 (10%)
Query: 51 NETLTLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATAR 110
+ + P + V + W PP IL+ L EG +
Sbjct: 9 GGGIPVIDGPTQILVRDVSDTVAFVEWTPPRAKVDFILLKYGLVGGEGGKTTFRLQPPLS 68
Query: 111 VEAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSL 170
+ +Q L P + Y + A ASS P N+ + +SL
Sbjct: 69 -QYSVQALRPGSRYEVSISAVRGTNESDASSTQFTT------EIDAPKNLRVGSRTATSL 121
Query: 171 LVTWEKPTVTNGEIKHYTLYYLEED-----TSVERHVVTPQLSYELTGLSHFTLYSIWVV 225
+ W+ E + Y + Y + + P LT L T Y + +
Sbjct: 122 DLEWDNS---EAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGIS 178
Query: 226 AHNGNGAGTTSQELSVQTLSDKPSEPPA-----NSITVRWQPPSRRGQNGIITGYKLRYK 280
A + + ++ +T D P + SI++ W +G I Y++ +
Sbjct: 179 AVMNSKQSIPAT-MNARTELDSPRDLMVTASSETSISLIWTKA-----SGPIDHYRITFT 232
Query: 281 KKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAET 335
VT DR Y +T L Y I + A + A T
Sbjct: 233 PSS---GISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLESTV-DAFT 283
Score = 147 bits (373), Expect = 6e-40
Identities = 69/316 (21%), Positives = 104/316 (32%), Gaps = 37/316 (11%)
Query: 333 AETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWG-KGVPDEF 391
+ S G V D P + R + V WTPP + V L +G G
Sbjct: 2 SPGISGGGGGIPVIDGPTQILVRDVSDTVAFVEWTPPRAK---VDFILLKYGLVGGEGGK 58
Query: 392 VKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPP 451
L + L P S Y +S+ A + T P
Sbjct: 59 TTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQFTT---EID-------AP 108
Query: 452 MGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLG--ASNPRYKYINANI 509
L+ + S+ + W E + Y V Y+ L G
Sbjct: 109 KNLRVGSRTATSLDLEW---------DNSEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPT 159
Query: 510 TSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSL 569
T + DL P T+Y + V K+S + T +PRDL V + +
Sbjct: 160 TKTTLTDLVPGTEYGVGISAVMNSKQSIPA-----TMNARTELDSPRDLMVTAS--SETS 212
Query: 570 VNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKA 629
++L W +G I Y I ++ P++ E +V D+ S + LEPG Y I A
Sbjct: 213 ISLIWTKA---SGPIDHYRITFT--PSSGISSEVTVPRDRTSYTLTDLEPGAEYIISITA 267
Query: 630 RNSAGSSPYSSTVTWT 645
S S+ +T
Sbjct: 268 ERGRQQSLESTVDAFT 283
Score = 106 bits (266), Expect = 1e-25
Identities = 39/204 (19%), Positives = 75/204 (36%), Gaps = 21/204 (10%)
Query: 447 VLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYIN 506
V+ P + +S + W + L++Y + G +
Sbjct: 14 VIDGPTQILVRDVSDTVAFVEW---------TPPRAKVDFILLKYGLVGGEGGKTTFRLQ 64
Query: 507 ANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEGD 566
++ + LRP ++YE ++ VR ES+ S +TQ AP++L V S+
Sbjct: 65 PPLSQYSVQALRPGSRYEVSISAVRGTNESDAS-----STQFTTEIDAPKNLRVGSR--T 117
Query: 567 PSLVNLNWQPPKSANGQISGYTILYS--SDPNTDQWIEESVVGDKMSTNVRGLEPGRIYY 624
+ ++L W + Y ++YS + + + +G T + L PG Y
Sbjct: 118 ATSLDLEWDNS---EAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYG 174
Query: 625 FKIKARNSAGSSPYSSTVTWTTAS 648
I A ++ S ++ T
Sbjct: 175 VGISAVMNSKQSIPATMNARTELD 198
Score = 69.8 bits (171), Expect = 3e-13
Identities = 18/107 (16%), Positives = 29/107 (27%), Gaps = 5/107 (4%)
Query: 542 VLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWI 601
+ P + V ++ + W PP ++ + Y
Sbjct: 5 ISGGGGGIPVIDGPTQILVRDVS--DTVAFVEWTPP---RAKVDFILLKYGLVGGEGGKT 59
Query: 602 EESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTAS 648
+ +V+ L PG Y I A S SST T
Sbjct: 60 TFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQFTTEID 106
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 171 bits (436), Expect = 2e-49
Identities = 85/199 (42%), Positives = 123/199 (61%), Gaps = 5/199 (2%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANI 509
PP+G+++ +LS ++RI+W D +LP Q + R+Y VR+ +N +YK NA
Sbjct: 7 PPVGVQASILSHDTIRITWADNSLPKH--QKITDSRYYTVRWK-TNIPANTKYKNANATT 63
Query: 510 TSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSL 569
S + L+P+T YEF+V V + ++ S WSM TT E P S P+D+TVVSKEG P
Sbjct: 64 LSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKT 123
Query: 570 VNLNWQPPKSANGQISGYTILYSSDPNTD--QWIEESVVGDKMSTNVRGLEPGRIYYFKI 627
+ +NWQPP ANG+I+GY I YS+D N + W+ E VVG++++ ++ L YYFKI
Sbjct: 124 IIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKI 183
Query: 628 KARNSAGSSPYSSTVTWTT 646
+ARNS G P S V + T
Sbjct: 184 QARNSKGMGPMSEAVQFRT 202
Score = 149 bits (378), Expect = 2e-41
Identities = 51/200 (25%), Positives = 81/200 (40%), Gaps = 20/200 (10%)
Query: 154 PSPPLNVNIPVVGTSSLLVTWEKPTVT----NGEIKHYTLYYLE--EDTSVERHVVTPQL 207
PP+ V ++ ++ +TW ++ + ++YT+ + + ++ L
Sbjct: 5 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTL 64
Query: 208 SYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPAN-----------SI 256
SY +TGL TLY V+ G + T S T P+ PP + +I
Sbjct: 65 SYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTI 124
Query: 257 TVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETV-TTAGDRRLYVITGLNKSTTYQIK 315
V WQPPS NG ITGY + Y + + G+R + I L T Y K
Sbjct: 125 IVNWQPPSE--ANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFK 182
Query: 316 LWAMNVNGSGPATDWFSAET 335
+ A N G GP ++ T
Sbjct: 183 IQARNSKGMGPMSEAVQFRT 202
Score = 140 bits (355), Expect = 3e-38
Identities = 49/200 (24%), Positives = 86/200 (43%), Gaps = 15/200 (7%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLPR----GEILVYCVLYKREGSERERAYNA-TARV 111
P V A ++ ++ + W +LP+ + Y V +K + NA +
Sbjct: 5 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTL 64
Query: 112 EAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPS-PPLNVNIPVVGTS-- 168
++ GL PNT Y F V+ + S T E VP+ PP +V +
Sbjct: 65 SYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTT-FEL-VPTSPPKDVTVVSKEGKPK 122
Query: 169 SLLVTWEKPTVTNGEIKHYTLYYLEEDTS-----VERHVVTPQLSYELTGLSHFTLYSIW 223
+++V W+ P+ NG+I Y +YY + + V VV +L++++ L+ T Y
Sbjct: 123 TIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFK 182
Query: 224 VVAHNGNGAGTTSQELSVQT 243
+ A N G G S+ + +T
Sbjct: 183 IQARNSKGMGPMSEAVQFRT 202
Score = 114 bits (286), Expect = 5e-29
Identities = 40/198 (20%), Positives = 78/198 (39%), Gaps = 19/198 (9%)
Query: 245 SDKPSEPPAN---------SITVRWQPPS--RRGQNGIITGYKLRYKKKDVKKDKGETVT 293
+D P PP +I + W S + + Y +R+K K +
Sbjct: 1 ADLPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNAN 60
Query: 294 TAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLK 353
Y++TGL +T Y+ + S + TF T P ++
Sbjct: 61 ATTLS--YLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFE---LVPTSPPKDVTVV 115
Query: 354 ARPGGPSSIIVSWTPPADQSIMVRGFTLGW---GKGVPDEFVKQILDVKQRSDEITGLEP 410
++ G P +IIV+W PP++ + + G+ + + ++V + + + + +I L
Sbjct: 116 SKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTL 175
Query: 411 NSDYVISLRAFNEMGDGP 428
++ Y ++A N G GP
Sbjct: 176 DTPYYFKIQARNSKGMGP 193
Score = 101 bits (253), Expect = 2e-24
Identities = 39/215 (18%), Positives = 77/215 (35%), Gaps = 17/215 (7%)
Query: 346 PDIPASLKARPGGPSSIIVSWTPPA----DQSIMVRGFTLGWGKGVPDEFVKQILDVKQR 401
P ++A +I ++W + + R +T+ W +P + +
Sbjct: 5 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTL 64
Query: 402 SDEITGLEPNSDYVISLRAFNEMGDGPQ-KYESLRTRNEPPPQAPKVLIPPMGLKSEVLS 460
S +TGL+PN+ Y S+ T P PK + + S+
Sbjct: 65 SYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDV----TVVSKEGK 120
Query: 461 PYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGA--SNPRYKYINANITSVQINDLR 518
P ++ ++W P + + Y++ Y+ + A + + + N + QI +L
Sbjct: 121 PKTIIVNW---QPPS---EANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELT 174
Query: 519 PSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPAS 553
T Y F ++ +K S V T +A
Sbjct: 175 LDTPYYFKIQARNSKGMGPMSEAVQFRTPKAHHHH 209
Score = 76.4 bits (188), Expect = 7e-16
Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 7/104 (6%)
Query: 550 APASAPRDLTVVSKEGDPSLVNLNWQPPK----SANGQISGYTILYSSDPNTDQWIEESV 605
P P + + + W YT+ + ++ ++
Sbjct: 3 LPMMPPVGVQASI--LSHDTIRITWADNSLPKHQKITDSRYYTVRWKTN-IPANTKYKNA 59
Query: 606 VGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649
+S V GL+P +Y F + SS +S T TT
Sbjct: 60 NATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFEL 103
Score = 71.8 bits (176), Expect = 2e-14
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYN----ATARVE 112
P +V + P+++ + W PP+ G+I Y + Y + + + R+
Sbjct: 108 PPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLT 167
Query: 113 AIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVP 154
IQ L +T Y F++ A N+ G G S A+ +T H
Sbjct: 168 HQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKAHHHH 209
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 157 bits (399), Expect = 4e-44
Identities = 53/242 (21%), Positives = 84/242 (34%), Gaps = 33/242 (13%)
Query: 150 EDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVE--RHVVTPQL 207
P N N G+ + W P +G+ Y + Y + S + +
Sbjct: 2 SHMDLGAPQNPNAKAAGSRKIHFNWLPP---SGKPMGYRVKYWIQGDSESEAHLLDSKVP 58
Query: 208 SYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPP--------ANSITVR 259
S ELT L + Y + V A+ G G S +S +T + PSEP + +
Sbjct: 59 SVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLS 118
Query: 260 WQPPSRRGQNGIITGYKLRYKKKDVKKDKG----ETVTTAGDRRLYVITGLNKSTTYQIK 315
W P+ NG IT Y++ Y + + + R+ +I L +S Y+
Sbjct: 119 WAEPAE--TNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYT 176
Query: 316 LWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGP------SSIIVSWTPP 369
+ A N G GP + T P P S+ P P S+
Sbjct: 177 VKARNGAGWGPEREAIINLA--------TQPKRPMSIPIIPDIPIVDAQSGEDYDSFLMY 228
Query: 370 AD 371
+D
Sbjct: 229 SD 230
Score = 149 bits (378), Expect = 3e-41
Identities = 61/235 (25%), Positives = 93/235 (39%), Gaps = 20/235 (8%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARV-EAII 115
APQ+ +A G R + WLPP G+ + Y V Y +G A+ ++V +
Sbjct: 6 LGAPQNPNAKAAGSRKIHFNWLPP---SGKPMGYRVKYWIQGDSESEAHLLDSKVPSVEL 62
Query: 116 QGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWE 175
L+P Y +V AY A G G SS + +T ++ VPS P + VV ++ ++W
Sbjct: 63 TNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRT-HQE-VPSEPGRLAFNVVSSTVTQLSWA 120
Query: 176 KPTVTNGEIKHYTLYY-----LEEDTSVERHVVTP---QLSYELTGLSHFTLYSIWVVAH 227
+P TNGEI Y + Y + V+ + L Y V A
Sbjct: 121 EPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKAR 180
Query: 228 NGNGAGTTSQE-LSVQTLSDKPSEPPANSITVRWQPPSRRGQNGIITGYKLRYKK 281
NG G G + +++ T +P P P Q+G L Y
Sbjct: 181 NGAGWGPEREAIINLATQPKRPMSIPII-----PDIPIVDAQSGEDYDSFLMYSD 230
Score = 140 bits (355), Expect = 6e-38
Identities = 47/246 (19%), Positives = 87/246 (35%), Gaps = 31/246 (12%)
Query: 245 SDKPSEPPAN---------SITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTA 295
S P N I W PP +G GY+++Y + + + + +
Sbjct: 2 SHMDLGAPQNPNAKAAGSRKIHFNWLPP-----SGKPMGYRVKYWIQGDSESEAHLLDSK 56
Query: 296 GDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKAR 355
+T L Y++K+ A G GP + S T VP P L
Sbjct: 57 VPS--VELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQ------EVPSEPGRLAFN 108
Query: 356 PGGPSSIIVSWTPPADQSIMVRGFTLGW------GKGVPDEFVKQILDVKQRSDEITGLE 409
+ +SW PA+ + + + + + + + + + K R I L
Sbjct: 109 VVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLR 168
Query: 410 PNSDYVISLRAFNEMGDGP--QKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRIS 467
+ Y +++A N G GP + +L T+ + P P + P + ++ Y +
Sbjct: 169 ESQPYRYTVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDIP-IVDAQSGEDYDSFLM 227
Query: 468 WIDTTL 473
+ D L
Sbjct: 228 YSDDVL 233
Score = 121 bits (304), Expect = 4e-31
Identities = 42/202 (20%), Positives = 73/202 (36%), Gaps = 18/202 (8%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANI 509
P ++ + +W+ G+ Y V+Y + G S +++ +
Sbjct: 8 APQNPNAKAAGSRKIHFNWL--------PPSGK-PMGYRVKY-WIQGDSESEAHLLDSKV 57
Query: 510 TSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSL 569
SV++ +L P YE V A+ E +S +V T + P S P L ++
Sbjct: 58 PSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVP-SEPGRLAFNVV--SSTV 114
Query: 570 VNLNWQPPKSANGQISGYTILY-----SSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYY 624
L+W P NG+I+ Y + Y + P + L + Y
Sbjct: 115 TQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYR 174
Query: 625 FKIKARNSAGSSPYSSTVTWTT 646
+ +KARN AG P +
Sbjct: 175 YTVKARNGAGWGPEREAIINLA 196
Score = 101 bits (253), Expect = 3e-24
Identities = 57/246 (23%), Positives = 88/246 (35%), Gaps = 24/246 (9%)
Query: 341 GEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQ 400
G P + A+ G I +W PP+ + G+ + + E +LD K
Sbjct: 1 GSHMDLGAPQNPNAKAAGSRKIHFNWLPPSGK---PMGYRVKYWIQGDSESEAHLLDSKV 57
Query: 401 RSDEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLS 460
S E+T L P DY + + A+ G+GP S + P P L V+S
Sbjct: 58 PSVELTNLYPYCDYEMKVCAYGAQGEGP---YSSLVSCRTHQEVPS---EPGRLAFNVVS 111
Query: 461 PYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKY-----INANITSVQIN 515
++SW P + E Y V Y + + P N + I
Sbjct: 112 STVTQLSW---AEPAE---TNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIE 165
Query: 516 DLRPSTQYEFTVKVVRAKKESEWSMIVLN-TTQEAAPASAPR--DLTVVSKE-GDPSLVN 571
+LR S Y +TVK ++N TQ P S P D+ +V + G+
Sbjct: 166 NLRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDIPIVDAQSGEDYDSF 225
Query: 572 LNWQPP 577
L +
Sbjct: 226 LMYSDD 231
Score = 91.0 bits (226), Expect = 1e-20
Identities = 28/135 (20%), Positives = 44/135 (32%), Gaps = 12/135 (8%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARV----- 111
PS P ++ +V L W P GEI Y V Y + +
Sbjct: 99 PSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPK 158
Query: 112 --EAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSS 169
+I+ L + Y + V A N G G A+ S P+ +IP+V S
Sbjct: 159 NRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDIPIVDAQS 218
Query: 170 -----LLVTWEKPTV 179
+ + +
Sbjct: 219 GEDYDSFLMYSDDVL 233
Score = 81.0 bits (200), Expect = 2e-17
Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 6/102 (5%)
Query: 548 EAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVG 607
AP++ + ++ NW PP +G+ GY + Y + +
Sbjct: 2 SHMDLGAPQNPNAKA--AGSRKIHFNWLPP---SGKPMGYRVKYWIQ-GDSESEAHLLDS 55
Query: 608 DKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649
S + L P Y K+ A + G PYSS V+ T +
Sbjct: 56 KVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQE 97
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 155 bits (392), Expect = 2e-40
Identities = 55/248 (22%), Positives = 84/248 (33%), Gaps = 16/248 (6%)
Query: 14 SDMDPSSSTPPNQYHLTSTTSMTASPLDTSTGSIEAINETLTLPSAPQSVSAIMVGPRSV 73
+ P P + + + + T P + + V
Sbjct: 290 ASESPCLECPEHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTAVGMGAKV 349
Query: 74 ALRWLPPTLPRG-EILVYCVLYKREGSERERAYNATARV------------EAIIQGLHP 120
LRW PP G E +VY V ++ E A V + L P
Sbjct: 350 ELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEP 409
Query: 121 NTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVT 180
+ +YTF V A N + + S +T + P V + T+SL V+W P
Sbjct: 410 HMNYTFTVEARNGVSGLVTSR--SFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQ 467
Query: 181 NGEIKHYTLYYLEEDTSVERHVV-TPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQEL 239
+ Y + Y ++ S +V T S L L+ T Y + V A G G S+
Sbjct: 468 QSRVWKYEVTYRKKGDSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVH 527
Query: 240 SVQTLSDK 247
QTLS +
Sbjct: 528 EFQTLSPE 535
Score = 137 bits (346), Expect = 2e-34
Identities = 46/243 (18%), Positives = 81/243 (33%), Gaps = 29/243 (11%)
Query: 120 PNTSYTFRVVAYN-ALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPT 178
P + A + G + + P PS P + V + + + W P
Sbjct: 299 PEHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYL-TAVGMGAKVELRWTPPQ 357
Query: 179 VTNG-EIKHYTLYYLEEDTS-------------VERHVVTPQLSYELTGLSHFTLYSIWV 224
+ G E Y++ + E + S ++ L Y+ V
Sbjct: 358 DSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTV 417
Query: 225 VAHNGNGAGTTSQELSVQTLSDKPSEPP--------ANSITVRWQPPSRRGQNGIITGYK 276
A NG TS+ ++S +EPP S++V W P Q + Y+
Sbjct: 418 EARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPP--QQSRVWKYE 475
Query: 277 LRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETF 336
+ Y+KK D + + L TTY +++ A+ G G + +T
Sbjct: 476 VTYRKKG---DSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQTL 532
Query: 337 SQD 339
S +
Sbjct: 533 SPE 535
Score = 115 bits (288), Expect = 4e-27
Identities = 46/295 (15%), Positives = 76/295 (25%), Gaps = 27/295 (9%)
Query: 365 SWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEM 424
W P Q + G+ + + + E
Sbjct: 257 EWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECPEHTLPSPEGATSCECEE 316
Query: 425 GDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEG 484
G + PP AP L V + + W T P G E
Sbjct: 317 GFFRAPQDPASMPCTRPPSAPHYLTA-------VGMGAKVELRW---TPP--QDSGGRED 364
Query: 485 RHYLVRYTHLLGASNPRYKY----------INANITSVQINDLRPSTQYEFTVKVVRAKK 534
Y V S TSV ++DL P Y FTV+
Sbjct: 365 IVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVS 424
Query: 535 ESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSD 594
S + + P + + + + ++++W P ++ Y + Y
Sbjct: 425 GLVTSRSFRTASVSINQ-TEPPKVRLEGR--STTSLSVSWSIPPPQQSRVWKYEVTYR-- 479
Query: 595 PNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649
D + S + L P Y +++A G S + T S
Sbjct: 480 KKGDSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQTLSP 534
Score = 108 bits (271), Expect = 7e-25
Identities = 31/210 (14%), Positives = 64/210 (30%), Gaps = 25/210 (11%)
Query: 236 SQELSVQTLSDKPSEPPAN--------SITVRWQPPSRRGQNGIITGYKLRYKKKDVKK- 286
+ + +P P + +RW PP G Y + ++ +
Sbjct: 321 APQDPASMPCTRPPSAPHYLTAVGMGAKVELRWTPPQDSG-GREDIVYSVTCEQCWPESG 379
Query: 287 --------DKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQ 338
+ R ++ L Y + A N + F +
Sbjct: 380 ECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTAS--- 436
Query: 339 DLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDV 398
P ++ +S+ VSW+ P Q V + + + K D +
Sbjct: 437 ---VSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQSRVWKYEVTYRK-KGDSNSYNVRRT 492
Query: 399 KQRSDEITGLEPNSDYVISLRAFNEMGDGP 428
+ S + L P++ Y++ ++A + G G
Sbjct: 493 EGFSVTLDDLAPDTTYLVQVQALTQEGQGA 522
Score = 68.7 bits (167), Expect = 3e-12
Identities = 30/134 (22%), Positives = 46/134 (34%), Gaps = 14/134 (10%)
Query: 545 TTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANG-QISGYTILYSSDP-------- 595
+ P SAP LT V + V L W PP+ + G + Y++
Sbjct: 327 SMPCTRPPSAPHYLTAVGM---GAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGP 383
Query: 596 --NTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASDMQEA 653
+ ++ E + S V LEP Y F ++ARN S + + S Q
Sbjct: 384 CEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTE 443
Query: 654 GGIPNSNQVSNTMI 667
S T +
Sbjct: 444 PPKVRLEGRSTTSL 457
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 141 bits (357), Expect = 1e-38
Identities = 50/197 (25%), Positives = 68/197 (34%), Gaps = 6/197 (3%)
Query: 54 LTLPSAPQSVSAIMVGPRSVALRWLPPTLPRG-EILVYCVLYKREGSERERAYNATARV- 111
+ P PQ + V SV L W PP L G +I Y V + +
Sbjct: 3 MDTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKT 62
Query: 112 EAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLL 171
+ L SY FRV+A N G GL + E P PP + + V +S+
Sbjct: 63 SWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASE--RPLPPGKITLMDVTRNSVS 120
Query: 172 VTWEKPTVTNG-EIKHYTLYYLEEDTSV-ERHVVTPQLSYELTGLSHFTLYSIWVVAHNG 229
++WEKP G I Y + + + +TGL YS V A N
Sbjct: 121 LSWEKPEHDGGSRILGYIVEMQTKGSDKWATCATVKVTEATITGLIQGEEYSFRVSAQNE 180
Query: 230 NGAGTTSQELSVQTLSD 246
G Q D
Sbjct: 181 KGISDPRQLSVPVIAKD 197
Score = 130 bits (330), Expect = 4e-35
Identities = 43/188 (22%), Positives = 72/188 (38%), Gaps = 15/188 (7%)
Query: 153 VPSPPLNVNIPVVGTSSLLVTWEKPTVTNG-EIKHYTLYYLEEDTSVERHVVTP--QLSY 209
P PP ++ + V +S+ +TW+ P + G +IK+Y + E V T + S+
Sbjct: 5 TPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTSW 64
Query: 210 ELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPP--------ANSITVRWQ 261
++ L Y V+A N G G ++ S++P P NS+++ W+
Sbjct: 65 KVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLSWE 124
Query: 262 PPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNV 321
P G I GY + + K ITGL + Y ++ A N
Sbjct: 125 KPEHDG-GSRILGYIVEMQTKG---SDKWATCATVKVTEATITGLIQGEEYSFRVSAQNE 180
Query: 322 NGSGPATD 329
G
Sbjct: 181 KGISDPRQ 188
Score = 104 bits (261), Expect = 8e-26
Identities = 42/203 (20%), Positives = 79/203 (38%), Gaps = 16/203 (7%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANI 509
PP LK + ++ S+ ++W P G + ++Y+V ++ Y + N
Sbjct: 8 PPQDLKVKEVTKTSVTLTW---DPPLL--DGGSKIKNYIVEKRE---STRKAYSTVATNC 59
Query: 510 --TSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDP 567
TS +++ L+ Y F V + + P P +T++ +
Sbjct: 60 HKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERP-LPPGKITLM--DVTR 116
Query: 568 SLVNLNWQPPKSANG-QISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFK 626
+ V+L+W+ P+ G +I GY + + +D+W + GL G Y F+
Sbjct: 117 NSVSLSWEKPEHDGGSRILGYIVEMQTK-GSDKWAT-CATVKVTEATITGLIQGEEYSFR 174
Query: 627 IKARNSAGSSPYSSTVTWTTASD 649
+ A+N G S A D
Sbjct: 175 VSAQNEKGISDPRQLSVPVIAKD 197
Score = 102 bits (255), Expect = 5e-25
Identities = 39/192 (20%), Positives = 65/192 (33%), Gaps = 19/192 (9%)
Query: 246 DKPSEPP--------ANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGD 297
D P P S+T+ W PP G I Y + ++ + TV T
Sbjct: 4 DTPGPPQDLKVKEVTKTSVTLTWDPPLLDG-GSKIKNYIVEKREST--RKAYSTVATNCH 60
Query: 298 RRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPG 357
+ + + L + +Y ++ A N G G + + P P +
Sbjct: 61 KTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVK------ASERPLPPGKITLMDV 114
Query: 358 GPSSIIVSWTPPA-DQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSDEITGLEPNSDYVI 416
+S+ +SW P D + G+ + + + VK ITGL +Y
Sbjct: 115 TRNSVSLSWEKPEHDGGSRILGYIVEM-QTKGSDKWATCATVKVTEATITGLIQGEEYSF 173
Query: 417 SLRAFNEMGDGP 428
+ A NE G
Sbjct: 174 RVSAQNEKGISD 185
Score = 86.2 bits (214), Expect = 2e-19
Identities = 36/199 (18%), Positives = 67/199 (33%), Gaps = 14/199 (7%)
Query: 344 TVPDIPASLKARPGGPSSIIVSWTPPA-DQSIMVRGFTLGWGKGVPDEFVKQILDVKQRS 402
P P LK + +S+ ++W PP D ++ + + + + + + S
Sbjct: 4 DTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTS 63
Query: 403 DEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPY 462
++ L+ Y + A NE G G + + P PP + ++
Sbjct: 64 WKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPL------PPGKITLMDVTRN 117
Query: 463 SMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQ 522
S+ +SW P+ G Y+V S+ +T I L +
Sbjct: 118 SVSLSW---EKPE--HDGGSRILGYIVEMQ--TKGSDKWATCATVKVTEATITGLIQGEE 170
Query: 523 YEFTVKVVRAKKESEWSMI 541
Y F V K S+ +
Sbjct: 171 YSFRVSAQNEKGISDPRQL 189
Score = 79.3 bits (196), Expect = 4e-17
Identities = 27/104 (25%), Positives = 38/104 (36%), Gaps = 6/104 (5%)
Query: 549 AAPA--SAPRDLTVVSKEGDPSLVNLNWQPPKSANGQ-ISGYTILYSSDPNTDQWIEESV 605
A P+DL V + V L W PP G I Y + + + +
Sbjct: 1 GAMDTPGPPQDLKVKEV--TKTSVTLTWDPPLLDGGSKIKNYIVEKR-ESTRKAYSTVAT 57
Query: 606 VGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649
K S V L+ G YYF++ A N G + T AS+
Sbjct: 58 NCHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASE 101
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A
{Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Length = 205
Score = 137 bits (346), Expect = 4e-37
Identities = 42/200 (21%), Positives = 63/200 (31%), Gaps = 19/200 (9%)
Query: 153 VPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTS----VERHVVTPQLS 208
VP+ P I + WE+ I HYT+ + T V S
Sbjct: 5 VPNAPKLTGI-TCQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDS 63
Query: 209 YELTGLSHFTLYSIWVVAHNGNGAGTTSQE-LSVQTLSDKPSEPPAN---------SITV 258
+ +S + Y+ V+A N GA S S T D P + P N ++ +
Sbjct: 64 SFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVI 123
Query: 259 RWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWA 318
W P N Y + +K+ + VI Y IK+ A
Sbjct: 124 SWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVA 183
Query: 319 MNVNGSGPATDW----FSAE 334
+N G +S E
Sbjct: 184 INDRGESNVAAEEVVGYSGE 203
Score = 128 bits (324), Expect = 4e-34
Identities = 41/202 (20%), Positives = 73/202 (36%), Gaps = 11/202 (5%)
Query: 56 LPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSE---RERAYNATARVE 112
+P+AP+ I + W R IL Y + + +
Sbjct: 5 VPNAPKLTG-ITCQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDS 63
Query: 113 AIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLV 172
+ + + P +YTFRV+A+N +GA S+ T D P NV ++L++
Sbjct: 64 SFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVI 123
Query: 173 TWEKPTVT--NGEIKHYTLYYLEEDTSVE--RHVVTP--QLSYELTGLSHFTLYSIWVVA 226
+W N HY + + + + + + Q + + F Y I VVA
Sbjct: 124 SWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVA 183
Query: 227 HNGNGAGTTSQE-LSVQTLSDK 247
N G + E + + D+
Sbjct: 184 INDRGESNVAAEEVVGYSGEDR 205
Score = 100 bits (250), Expect = 3e-24
Identities = 36/206 (17%), Positives = 62/206 (30%), Gaps = 15/206 (7%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRY-THLLGASNPRYKYINAN 508
P + I W + HY +++ T AS N
Sbjct: 8 APKLTGITCQA-DKAEIHWEQ---QGD---NRSPILHYTIQFNTSFTPASWDAAYEKVPN 60
Query: 509 ITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLN-TTQEAAPASAPRDLTVVSKEGDP 567
S + + P Y F V S S + TTQ P P ++ +P
Sbjct: 61 TDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQG--TEP 118
Query: 568 SLVNLNWQPPKS--ANGQISGYTILYSSDPNTDQWIEESVV-GDKMSTNVRGLEPGRIYY 624
+ + ++W P N Y + + D W ++ + + + Y
Sbjct: 119 NNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYL 178
Query: 625 FKIKARNSAGSSPYSS-TVTWTTASD 649
K+ A N G S ++ V + D
Sbjct: 179 IKVVAINDRGESNVAAEEVVGYSGED 204
Score = 97.5 bits (243), Expect = 3e-23
Identities = 31/196 (15%), Positives = 66/196 (33%), Gaps = 14/196 (7%)
Query: 241 VQTLSDKPSEPP----ANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAG 296
VQ + + P A+ + W+ I Y +++
Sbjct: 2 VQDVPNAPKLTGITCQADKAEIHWEQQGDN--RSPILHYTIQFNTSFTPASWDAAYEKVP 59
Query: 297 DRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARP 356
+ + ++ Y ++ A N G+ P SA + S P ++ +
Sbjct: 60 NTDSSFVVQMSPWANYTFRVIAFNKIGASP----PSAHSDSCTTQPDVPFKNPDNVVGQG 115
Query: 357 GGPSSIIVSWTPP--ADQSIMVRGFTLGW-GKGVPDEFVKQ-ILDVKQRSDEITGLEPNS 412
P+++++SWTP + + + + W + I D +Q + I
Sbjct: 116 TEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFV 175
Query: 413 DYVISLRAFNEMGDGP 428
Y+I + A N+ G+
Sbjct: 176 KYLIKVVAINDRGESN 191
Score = 84.8 bits (210), Expect = 7e-19
Identities = 38/208 (18%), Positives = 70/208 (33%), Gaps = 13/208 (6%)
Query: 345 VPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTL-GWGKGVPDEFVKQILDV-KQRS 402
VP+ P + W D + +T+ P + V S
Sbjct: 5 VPNAPKLTGITCQA-DKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDS 63
Query: 403 DEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPY 462
+ + P ++Y + AFN++G P S P P P + + P
Sbjct: 64 SFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCT--TQPDVPFK--NPDNVVGQGTEPN 119
Query: 463 SMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYI-NANITSVQINDLRPST 521
++ ISW T + + + HY V + + A+ I + ++ I D
Sbjct: 120 NLVISW---TPMPEIEHNA-PNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFV 175
Query: 522 QYEFTVKVVRAKKESEWS-MIVLNTTQE 548
+Y V + + ES + V+ + E
Sbjct: 176 KYLIKVVAINDRGESNVAAEEVVGYSGE 203
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 141 bits (356), Expect = 1e-36
Identities = 45/199 (22%), Positives = 72/199 (36%), Gaps = 9/199 (4%)
Query: 56 LPSAPQSVSAIMVGPRSVALRWLPPTLPRG-EILVYCVLYKREGSERERAYNATARVE-A 113
+PS+P V I + + + + P G I Y V K SE + +
Sbjct: 195 VPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMV 254
Query: 114 IIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVT 173
++ L PNT+Y RV A N G G S +T P PSPP +++ S ++
Sbjct: 255 VLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVR-EPSPP-SIHGQPSSGKSFKLS 312
Query: 174 WEKPTVTNGEIKHYTLYYLEEDTSVERHVVT---PQLSYELTGLSHFTLYSIWVVAHNGN 230
K I Y + Y +D + + L L Y + + A N
Sbjct: 313 ITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRL 372
Query: 231 GAGTTSQELSVQTLSDKPS 249
G + ++ KP+
Sbjct: 373 GYSEPTVY--EFSMPPKPN 389
Score = 134 bits (338), Expect = 4e-34
Identities = 57/264 (21%), Positives = 95/264 (35%), Gaps = 30/264 (11%)
Query: 97 EGSERERAYNATARVEAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSP 156
+ + + Y+ ++ I N + A N +G L + VPS
Sbjct: 144 KNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALAD-----VPSS 198
Query: 157 PLNVNIPVVGTSSLLVTWEKPTVTNG-EIKHYTLYYLEEDTSVERHVVTP--QLSYELTG 213
P V I + ++ V++ KP G I HY + E + + + V + Q L
Sbjct: 199 PYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNN 258
Query: 214 LSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPP--------ANSITVRWQPPSR 265
L T Y I V A NG G G S+ QTL + PP S +
Sbjct: 259 LEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQPSSGKSFKLSITKQDD 318
Query: 266 RGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSG 325
I Y ++Y+ KD + G++ ++ L + Y++++ A N G
Sbjct: 319 --GGAPILEYIVKYRSKDKEDQW-LEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYS 375
Query: 326 PATDWFSAETFSQDLGEFTVPDIP 349
T + EF++P P
Sbjct: 376 EPTVY-----------EFSMPPKP 388
Score = 115 bits (289), Expect = 9e-28
Identities = 48/200 (24%), Positives = 78/200 (39%), Gaps = 13/200 (6%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANI 509
P G+K LS + ++S+ PD G HY V ++ +K + ++
Sbjct: 198 SPYGVKIIELSQTTAKVSF---NKPDS--HGGVPIHHYQVDVKE---VASEIWKIVRSHG 249
Query: 510 --TSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDP 567
T V +N+L P+T YE V V K + ++S I + T S P ++ +
Sbjct: 250 VQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPP---SIHGQPSSG 306
Query: 568 SLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKI 627
L+ I Y + Y S DQW+E+ V G+K + L+ Y +I
Sbjct: 307 KSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQI 366
Query: 628 KARNSAGSSPYSSTVTWTTA 647
A N G S +
Sbjct: 367 TAANRLGYSEPTVYEFSMPP 386
Score = 93.7 bits (233), Expect = 1e-20
Identities = 56/350 (16%), Positives = 98/350 (28%), Gaps = 67/350 (19%)
Query: 224 VVAHNGNGAGTTSQELSVQTLSDKP--SEPPAN-------------------SITVRWQP 262
A + G S L ++ P ++ W
Sbjct: 80 CEAASRIGGHQKSMYLDIE---YAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHW-- 134
Query: 263 PSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNK--STTYQIKLWAMN 320
RR + + K + G + + I + Y A N
Sbjct: 135 --RRDKLVLPAKNTTNLK-----------TYSTGRKMILEIAPTSDNDFGRYNCT--ATN 179
Query: 321 VNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPA-DQSIMVRGF 379
G+ L VP P +K ++ VS+ P + + +
Sbjct: 180 HIGT---------RFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHY 230
Query: 380 TLGWGKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDG-PQKYESLRTRN 438
+ + + + Q + LEPN+ Y I + A N G G K E +T
Sbjct: 231 QVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLP 290
Query: 439 EPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGAS 498
P P + P S S ++S T D G Y+V+Y
Sbjct: 291 VREPSPPSIHGQPS-------SGKSFKLSI---TKQDD---GGAPILEYIVKYRSKDKED 337
Query: 499 NPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQE 548
K + N + + L+ + YE + SE ++ + +
Sbjct: 338 QWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPK 387
Score = 74.5 bits (183), Expect = 2e-14
Identities = 25/158 (15%), Positives = 49/158 (31%), Gaps = 9/158 (5%)
Query: 494 LLGASNPRYKYINANITSV-QINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPA 552
L + K + + +I + + I+ A
Sbjct: 141 LPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYIL----ALADVP 196
Query: 553 SAPRDLTVVSKEGDPSLVNLNWQPPKSANGQ-ISGYTILYSSDPNTDQWIEESVVGDKMS 611
S+P + ++ E + +++ P S G I Y + + ++ W G +
Sbjct: 197 SSPYGVKII--ELSQTTAKVSFNKPDSHGGVPIHHYQVDVK-EVASEIWKIVRSHGVQTM 253
Query: 612 TNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649
+ LEP Y ++ A N G YS + T
Sbjct: 254 VVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPV 291
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor;
2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A
1lwr_A
Length = 209
Score = 133 bits (337), Expect = 7e-36
Identities = 47/200 (23%), Positives = 72/200 (36%), Gaps = 11/200 (5%)
Query: 54 LTLPSAPQSVSAIMVGPRSVALRWLPPTLPRG-EILVYCVLYKREGSERERAYNATARV- 111
PS+P + +++ P G IL Y ++ G E + A+
Sbjct: 6 ADTPSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEA 64
Query: 112 ----EAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGT 167
I GL P T+Y R+ A N G G S+A KT+P PS P
Sbjct: 65 SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVR-EPSAPKLEGQMGEDG 123
Query: 168 SSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTP--QLSYELTGLSHFTLYSIWVV 225
+S+ V K I+HY + Y + + + P L L Y ++VV
Sbjct: 124 NSIKVNLIKQDDGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVV 183
Query: 226 AHNGNGAGTTSQELSVQTLS 245
A N G + +T +
Sbjct: 184 AENQQGKSKAA-HFVFRTAA 202
Score = 120 bits (303), Expect = 2e-31
Identities = 37/193 (19%), Positives = 63/193 (32%), Gaps = 21/193 (10%)
Query: 153 VPSPPLNVNIPVVGTSSLLVTWEKPTVTNG-EIKHYTLYYLEEDTS------VERHVVTP 205
PS P +S+ V +++P T G I Y + + +
Sbjct: 8 TPSSPSID-QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASM 66
Query: 206 QLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPP---------ANSI 256
+ + GL T Y++ + A NG G G S +T + P NSI
Sbjct: 67 EGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGEDGNSI 126
Query: 257 TVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKL 316
V G I Y +RY+ + + ++ L+ + Y++ +
Sbjct: 127 KVNLIKQDDGG--SPIRHYLVRYRALS--SEWKPEIRLPSGSDHVMLKSLDWNAEYEVYV 182
Query: 317 WAMNVNGSGPATD 329
A N G A
Sbjct: 183 VAENQQGKSKAAH 195
Score = 116 bits (293), Expect = 6e-30
Identities = 41/210 (19%), Positives = 72/210 (34%), Gaps = 15/210 (7%)
Query: 243 TLSDKPSEPP-------ANSITVRWQPPSRRGQNGIITGYKLRYKKK--DVKKDKGETVT 293
+D PS P +++ V++ P G I YK ++ +V K
Sbjct: 4 AQADTPSSPSIDQVEPYSSTAQVQFDEPEATG-GVPILKYKAEWRAVGEEVWHSKWYDAK 62
Query: 294 TAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLK 353
A + I GL TTY ++L A+N G G + +T P P
Sbjct: 63 EASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ-----PVREPSAPKLEG 117
Query: 354 ARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSDEITGLEPNSD 413
+SI V+ D +R + + + + + L + L+ N++
Sbjct: 118 QMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAE 177
Query: 414 YVISLRAFNEMGDGPQKYESLRTRNEPPPQ 443
Y + + A N+ G + RT
Sbjct: 178 YEVYVVAENQQGKSKAAHFVFRTAAAHHHH 207
Score = 108 bits (271), Expect = 5e-27
Identities = 37/215 (17%), Positives = 65/215 (30%), Gaps = 15/215 (6%)
Query: 441 PPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNP 500
P P + E S + ++ + P+ G Y + +
Sbjct: 5 QADTPS---SPSIDQVEPYS-STAQVQF---DEPEA--TGGVPILKYKAEWRAVGEEVWH 55
Query: 501 RYKYINA---NITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRD 557
Y V I L+P T Y + + K E S TQ SAP+
Sbjct: 56 SKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKL 115
Query: 558 LTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGL 617
+ D + + +N I Y + Y + +++ E + ++ L
Sbjct: 116 EGQMG--EDGNSIKVNLIKQDDGGSPIRHYLVRYRAL-SSEWKPEIRLPSGSDHVMLKSL 172
Query: 618 EPGRIYYFKIKARNSAGSSPYSSTVTWTTASDMQE 652
+ Y + A N G S + V T A+
Sbjct: 173 DWNAEYEVYVVAENQQGKSKAAHFVFRTAAAHHHH 207
Score = 81.8 bits (202), Expect = 8e-18
Identities = 46/214 (21%), Positives = 78/214 (36%), Gaps = 20/214 (9%)
Query: 340 LGEFTVPDIPASLKARPGGPSSIIVSWTPPADQ-SIMVRGFTLGWGKGVPDEFVKQILDV 398
L + P P+ + P S+ V + P + + + W + + + D
Sbjct: 3 LAQADTPSSPSIDQVEPYS-STAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA 61
Query: 399 KQRSDE----ITGLEPNSDYVISLRAFNEMGDG-PQKYESLRTRNEPPPQAPKVLIPPMG 453
K+ S E I GL+P + Y + L A N G G +T+ P APK+
Sbjct: 62 KEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKL------ 115
Query: 454 LKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANITSVQ 513
S++++ D G RHYLVRY L + + + V
Sbjct: 116 EGQMGEDGNSIKVNL---IKQD---DGGSPIRHYLVRYR-ALSSEWKPEIRLPSGSDHVM 168
Query: 514 INDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQ 547
+ L + +YE V + +S+ + V T
Sbjct: 169 LKSLDWNAEYEVYVVAENQQGKSKAAHFVFRTAA 202
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 125 bits (315), Expect = 7e-33
Identities = 35/209 (16%), Positives = 70/209 (33%), Gaps = 22/209 (10%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGS--------------ERE 102
P + + SV LRW+ P I+++ V Y+ G + +
Sbjct: 2 TYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPK 61
Query: 103 RAYNATARVEAIIQGLHPNTSYTFRVVAYNALGAGLASSA---LPVKTEPEDHVPSPPLN 159
A + L P +Y FR++A + S+ ++ P
Sbjct: 62 WNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPEL 121
Query: 160 VNIPVVGTSSLLVTWEKPTVTNG-EIKHYTLYYLEEDTSVERHVVT----PQLSYELTGL 214
+ I +++++ W + + I Y YY ++ E T S+++ L
Sbjct: 122 LEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPL 181
Query: 215 SHFTLYSIWVVAHNGNGAGTTSQELSVQT 243
T+Y + + + A S +T
Sbjct: 182 ETATMYEFKLQSFSAASASEFSALKQGRT 210
Score = 114 bits (288), Expect = 3e-29
Identities = 32/210 (15%), Positives = 59/210 (28%), Gaps = 29/210 (13%)
Query: 154 PSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTS---------------V 198
PP N+ + S+++ W P I + + Y
Sbjct: 2 TYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPK 61
Query: 199 ERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDK----PSEPPAN 254
+ + +T L Y ++A N S + L P P
Sbjct: 62 WNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPEL 121
Query: 255 ---------SITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITG 305
++ + W S +ITGY Y+ + + R + I
Sbjct: 122 LEIEEYSETAVVLHWSLASDAD-EHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAP 180
Query: 306 LNKSTTYQIKLWAMNVNGSGPATDWFSAET 335
L +T Y+ KL + + + + T
Sbjct: 181 LETATMYEFKLQSFSAASASEFSALKQGRT 210
Score = 106 bits (267), Expect = 2e-26
Identities = 41/212 (19%), Positives = 80/212 (37%), Gaps = 18/212 (8%)
Query: 450 PPMGLKSEVLSPYSMRISWI---DTTLPD-----QFQQHGEEGRHYLVRYTHLLGASNPR 501
PP LS S+ + W+ + LP Q++ G+ + P+
Sbjct: 4 PPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKN--WQTTNDNIPYGKPK 61
Query: 502 YKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSM----IVLNTTQEAAPASAPRD 557
+ + + DL+P Y F + V + +++ S L P P
Sbjct: 62 WNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPEL 121
Query: 558 LTVVSKEGDPSLVNLNWQPPKSANG-QISGYTILYSSDPNTDQWIEESVVGDKM-STNVR 615
L + + V L+W A+ I+GY Y + ++ + ++ G S +
Sbjct: 122 LEIEE--YSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIA 179
Query: 616 GLEPGRIYYFKIKARNSAGSSPYSSTVTWTTA 647
LE +Y FK+++ ++A +S +S+ T
Sbjct: 180 PLETATMYEFKLQSFSAASASEFSALKQGRTQ 211
Score = 102 bits (256), Expect = 5e-25
Identities = 34/190 (17%), Positives = 72/190 (37%), Gaps = 17/190 (8%)
Query: 253 ANSITVRWQPPSRRGQNGIITGYKLRYKKK-----------DVKKDKGETVTTAGDRRLY 301
S+ +RW P G I +K++Y+ ++ K + + G
Sbjct: 15 DESVMLRWMVPRNDG--LPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTA 72
Query: 302 VITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSS 361
+T L TY+ ++ A+ N ++ SA+ + Q +P L+ ++
Sbjct: 73 SVTDLKPQHTYRFRILAVYSNNDNKESN-TSAKFYLQPGAALDPMPVPELLEIEEYSETA 131
Query: 362 IIVSWTPPA-DQSIMVRGFTLGWG-KGVPDEFVKQ-ILDVKQRSDEITGLEPNSDYVISL 418
+++ W+ + ++ G+ + E+ K I RS +I LE + Y L
Sbjct: 132 VVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKL 191
Query: 419 RAFNEMGDGP 428
++F+
Sbjct: 192 QSFSAASASE 201
Score = 69.8 bits (171), Expect = 1e-13
Identities = 22/113 (19%), Positives = 35/113 (30%), Gaps = 4/113 (3%)
Query: 39 PLDTSTGSIEAINETLTLPSAPQSVSAIMVGPRSVALRWLPPTLPRG-EILVYCVLYKRE 97
+TS L P+ + +V L W + I Y Y+
Sbjct: 98 ESNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPS 157
Query: 98 GSERERAYNATARVEA---IIQGLHPNTSYTFRVVAYNALGAGLASSALPVKT 147
S E A I L T Y F++ +++A A S+ +T
Sbjct: 158 SSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRT 210
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 128 bits (323), Expect = 8e-32
Identities = 72/505 (14%), Positives = 150/505 (29%), Gaps = 61/505 (12%)
Query: 168 SSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTPQLSYELTGLSHFTLYSIWVVAH 227
+W+ P+ G Y + + S + T S ++ LS Y I + +
Sbjct: 10 QVWQCSWKAPS-GTGRGTDYEVCIEQRSRSCYQLEKT---SIKIPALS-HGDYEITINSL 64
Query: 228 NGNGAGTTSQELSVQTLSDKPSEP---------PANSITVRWQPPSRRGQNGIITGYKLR 278
+ G+ T+ L+ Q +S P P +++ ++W + ++++
Sbjct: 65 HDFGSSTSKFTLNEQNVSLIPDTPEILQLSADFSTSTLYLKWNDRGSVFPHRSNVIWEIK 124
Query: 279 YKKK---DVKKDKGETVTTAGDRRLYVITGLN----KSTTYQIKLWAMN----VNGSGPA 327
+K ++ K T G L+ + + + + +++ +G
Sbjct: 125 VLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFVEIRCYIDNLHFSGLEEW 184
Query: 328 TDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGV 387
+DW + S + + P G S I L
Sbjct: 185 SDWSPVKQIS-WIPDSQTKVFPQDKVILVG--SDITFCCVSQEKVL-----SALIGHTNC 236
Query: 388 PDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQAPKV 447
P LD + + +I + ++ ++ E + ++ PP
Sbjct: 237 PLIH----LDGENVAIKIRNISVSASSGTNVVFTTEDN----IFGTVIFAGYPPD----- 283
Query: 448 LIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHL-LGASNPRYKYIN 506
P L E + SW G Y + + R +
Sbjct: 284 --TPQQLNCETHDLKEIICSW---NPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPT 338
Query: 507 ANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEGD 566
+ L Y FT+ S+ +++V E P V +
Sbjct: 339 NESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILV--NITEKVYPHTPTSFKVKDI--N 394
Query: 567 PSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMST---NVRGLEPGRIY 623
+ V L+W P + I + + ++ G + S+ + L P +Y
Sbjct: 395 STAVKLSWHLPGNFAKINFLCEIEIKKSNSVQEQRNVTIQGVENSSYLVALDKLNPYTLY 454
Query: 624 YFKIKAR--NSAGSSPYSSTVTWTT 646
F+I+ S +S+ T
Sbjct: 455 TFRIRCSTETFWKWSKWSNKKQHLT 479
Score = 122 bits (307), Expect = 1e-29
Identities = 74/500 (14%), Positives = 149/500 (29%), Gaps = 46/500 (9%)
Query: 71 RSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAIIQGLHPNTSYTFRVVA 130
+ W P+ G Y V ++ + + ++ A+ G Y + +
Sbjct: 10 QVWQCSWKAPS-GTGRGTDYEVCIEQRSRSCYQLEKTSIKIPALSHG-----DYEITINS 63
Query: 131 YNALGAGLASSALPVKTEPEDHVPSPPLNVNI-PVVGTSSLLVTWEKPTVTNGEIKHYTL 189
+ G+ + L + +P P + + TS+L + W +
Sbjct: 64 LHDFGSSTSKFTLNEQNVSL--IPDTPEILQLSADFSTSTLYLKWNDRGSVFPHRSNVIW 121
Query: 190 YYLEEDTSVERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPS 249
+ E + ++++ T TL+ + E+ + S
Sbjct: 122 EI--KVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFVEIRCYIDNLHFS 179
Query: 250 EPPANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVT----TAGDRRLYVITG 305
S + S + + +D G +T + +I
Sbjct: 180 GLEEWSDWSPVKQISWIPD------SQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGH 233
Query: 306 LNKSTTY----QIKLWAMNVNGSGPATDWFSAE----TFSQDLGEFTVPDIPASLKARPG 357
N + + + N++ S + F + PD P L
Sbjct: 234 TNCPLIHLDGENVAIKIRNISVSASSGTNVVFTTEDNIFGTVIFAGYPPDTPQQLNCETH 293
Query: 358 GPSSIIVSWTPPADQSIMVR---GFTLGWGKGVPDEFVKQILDVKQRSDE--ITGLEPNS 412
II SW P +++ +TL +K+ S + L
Sbjct: 294 DLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTNESYQLLFQMLPNQE 353
Query: 413 DYVISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTT 472
Y +L A N +G T P P K + ++ ++++SW
Sbjct: 354 IYNFTLNAHNPLGRSQSTILVNITEKVYPH-------TPTSFKVKDINSTAVKLSW---H 403
Query: 473 LPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRA 532
LP F + + + + N + + + V ++ L P T Y F ++
Sbjct: 404 LPGNFAKINFLCEIEIKKSNSVQEQRNVTIQGVENSSYLVALDKLNPYTLYTFRIRCSTE 463
Query: 533 --KKESEWSMIVLNTTQEAA 550
K S+WS + T EA+
Sbjct: 464 TFWKWSKWSNKKQHLTTEAS 483
Score = 104 bits (261), Expect = 7e-24
Identities = 55/399 (13%), Positives = 107/399 (26%), Gaps = 48/399 (12%)
Query: 55 TLPSAPQSVS-AIMVGPRSVALRWL--PPTLPRGEILVYCVLYKREGSERERAYNATARV 111
+P P+ + + ++ L+W P +++ + R+ S
Sbjct: 83 LIPDTPEILQLSADFSTSTLYLKWNDRGSVFPHRSNVIWEIKVLRKESMELVKLVTHQTT 142
Query: 112 EAIIQGLH----------PNTSYTFRVVAYNALGAGLA-------SSALPVKTEPEDHVP 154
LH + + Y S + P+
Sbjct: 143 LNGKDTLHHWSWASDMPLECAIHFVEIRCYIDNLHFSGLEEWSDWSPVKQISWIPDSQTK 202
Query: 155 SPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTPQLSYELTGL 214
P + I V S + V+ ++ + + H+ ++ ++ +
Sbjct: 203 VFPQDKVILV--GSDITFCC----VSQEKVLSALIGH---TNCPLIHLDGENVAIKIRNI 253
Query: 215 SHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPA-----NSITVRWQPPSRRGQN 269
S VV + T + D P + I W P
Sbjct: 254 SVSASSGTNVVFTTEDNIFGT--VIFAGYPPDTPQQLNCETHDLKEIICSWNPGRVTALV 311
Query: 270 G-IITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPAT 328
G T Y L + + L Y L A N G +T
Sbjct: 312 GPRATSYTLVESFSGKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQST 371
Query: 329 DWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTL--GWGKG 386
++ E P P S K + +++ +SW P + + + +
Sbjct: 372 ILV-------NITEKVYPHTPTSFKVKDINSTAVKLSWHLPGNFAKINFLCEIEIKKSNS 424
Query: 387 VPDEFVKQILDVKQRSDE--ITGLEPNSDYVISLRAFNE 423
V ++ I V+ S + L P + Y +R E
Sbjct: 425 VQEQRNVTIQGVENSSYLVALDKLNPYTLYTFRIRCSTE 463
Score = 33.7 bits (76), Expect = 0.23
Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 10/115 (8%)
Query: 557 DLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRG 616
DL V+ + +W+ P Y + + +E++ S +
Sbjct: 1 DLKCVTNN--LQVWQCSWKAPSGTGRGTD-YEVCIEQRSRSCYQLEKT------SIKIPA 51
Query: 617 LEPGRIYYFKIKARNSAGSSPYSSTVTWTTASDMQEAGGIPNSNQVSNTMILYVK 671
L G Y I + + GSS T+ S + + I + +T LY+K
Sbjct: 52 LSHGD-YEITINSLHDFGSSTSKFTLNEQNVSLIPDTPEILQLSADFSTSTLYLK 105
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 121 bits (305), Expect = 9e-32
Identities = 32/194 (16%), Positives = 62/194 (31%), Gaps = 15/194 (7%)
Query: 55 TLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAI 114
T P+ + +++LRW P + Y + Y ++ I
Sbjct: 5 TDLDNPKDLEVSDPTETTLSLRWRRPV---AKFDRYRLTYVSPSGKKNEMEIPVDSTSFI 61
Query: 115 IQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTW 174
++GL T YT +VA + T V P ++ + +S V+W
Sbjct: 62 LRGLDAGTEYTISLVAEKGRHKSKPT------TIKGSTVVGSPKGISFSDITENSATVSW 115
Query: 175 EKPTVTNGEIKHYTLYYLEEDTSVERHVVTP--QLSYELTGLSHFTLYSIWVVAHNGNGA 232
P + Y + Y+ V + +L L Y++ +++ G
Sbjct: 116 TPP---RSRVDSYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEE 172
Query: 233 GTTSQELSVQTLSD 246
++T D
Sbjct: 173 SEPI-SGILKTALD 185
Score = 109 bits (275), Expect = 9e-28
Identities = 34/184 (18%), Positives = 62/184 (33%), Gaps = 21/184 (11%)
Query: 253 ANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTY 312
++++RW+ P Y+L Y K + D +++ GL+ T Y
Sbjct: 20 ETTLSLRWRRPV-----AKFDRYRLTYVSPS---GKKNEMEIPVDSTSFILRGLDAGTEY 71
Query: 313 QIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQ 372
I L A T + TV P + +S VSWTPP +
Sbjct: 72 TISLVAEKGRHKSKPTT----------IKGSTVVGSPKGISFSDITENSATVSWTPPRSR 121
Query: 373 SIMVRGFTLGWGKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYE 432
V + + + +D + ++ L P DY +++ + +
Sbjct: 122 ---VDSYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPISG 178
Query: 433 SLRT 436
L+T
Sbjct: 179 ILKT 182
Score = 101 bits (253), Expect = 8e-25
Identities = 36/203 (17%), Positives = 69/203 (33%), Gaps = 22/203 (10%)
Query: 444 APKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYK 503
A L P L+ + ++ + W +F Y + Y G N
Sbjct: 3 AGTDLDNPKDLEVSDPTETTLSLRW--RRPVAKFD-------RYRLTYVSPSGKKNEME- 52
Query: 504 YINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVSK 563
I + TS + L T+Y ++ + + +S+ + T + + +P+ ++
Sbjct: 53 -IPVDSTSFILRGLDAGTEYTISLVAEKGRHKSKPT-----TIKGSTVVGSPKGISFSDI 106
Query: 564 EGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIY 623
+ ++W PP ++ Y + Y +V G K T + L PG Y
Sbjct: 107 --TENSATVSWTPP---RSRVDSYRVSYVPITGGT-PNVVTVDGSKTRTKLVKLVPGVDY 160
Query: 624 YFKIKARNSAGSSPYSSTVTWTT 646
I + S S + T
Sbjct: 161 NVNIISVKGFEESEPISGILKTA 183
Score = 88.3 bits (219), Expect = 3e-20
Identities = 40/206 (19%), Positives = 72/206 (34%), Gaps = 24/206 (11%)
Query: 344 TVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSD 403
T D P L+ +++ + W P + + L + + +I V S
Sbjct: 5 TDLDNPKDLEVSDPTETTLSLRWRRPVAK---FDRYRLTYVSPSGKKNEMEI-PVDSTSF 60
Query: 404 EITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYS 463
+ GL+ ++Y ISL A T V+ P G+ ++ S
Sbjct: 61 ILRGLDAGTEYTISLVAEKGRHKSKPTTIKGST----------VVGSPKGISFSDITENS 110
Query: 464 MRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQY 523
+SW T + Y V Y + G P ++ + T ++ L P Y
Sbjct: 111 ATVSW--TPPRSRV-------DSYRVSYVPITG-GTPNVVTVDGSKTRTKLVKLVPGVDY 160
Query: 524 EFTVKVVRAKKESEWSMIVLNTTQEA 549
+ V+ +ESE +L T ++
Sbjct: 161 NVNIISVKGFEESEPISGILKTALDS 186
Score = 66.3 bits (162), Expect = 1e-12
Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 5/100 (5%)
Query: 52 ETLTLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKR-EGSERERAYNATAR 110
+ T+ +P+ +S + S + W P PR + Y V Y G ++
Sbjct: 90 KGSTVVGSPKGISFSDITENSATVSWTP---PRSRVDSYRVSYVPITGGTPNVVTVDGSK 146
Query: 111 VEAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPE 150
+ L P Y +++ S + +KT +
Sbjct: 147 TRTKLVKLVPGVDYNVNIISVKGFEESEPISGI-LKTALD 185
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer,
neovascularization, cell adhesion, protein binding,
oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Length = 203
Score = 121 bits (305), Expect = 1e-31
Identities = 38/205 (18%), Positives = 74/205 (36%), Gaps = 18/205 (8%)
Query: 132 NALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYY 191
++ SS L + + P +++ + SS+ + W + I Y +
Sbjct: 3 SSHHHHHHSSGLVPRGSHME--VPQPTDLSFVDITDSSIGLRWTPLN--SSTIIGYRITV 58
Query: 192 LEEDTS---VERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKP 248
+ E V + Y +TGL Y I V G T + L+ QT P
Sbjct: 59 VAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPT-TLTQQTAVPPP 117
Query: 249 SEPPA-----NSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVI 303
++ +++ V W PP + +T + +RY ++D E ++ + V+
Sbjct: 118 TDLRFTNIGPDTMRVTWAPP----PSIDLTNFLVRYSPVKNEEDVAE-LSISPSDNAVVL 172
Query: 304 TGLNKSTTYQIKLWAMNVNGSGPAT 328
T L T Y + + ++
Sbjct: 173 TNLLPGTEYVVSVSSVYEQHESTPL 197
Score = 114 bits (286), Expect = 4e-29
Identities = 36/211 (17%), Positives = 67/211 (31%), Gaps = 16/211 (7%)
Query: 38 SPLDTSTGSIEAINETLTLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKR- 96
S S + P +S + + S+ LRW P I+ Y +
Sbjct: 4 SHHHHHHSSGLVPRGSHMEVPQPTDLSFVDITDSSIGLRWTPL--NSSTIIGYRITVVAA 61
Query: 97 -EGSERERAYNATARVEAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPS 155
EG + ++ + GL P Y V G ++ +
Sbjct: 62 GEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLT------QQTAVP 115
Query: 156 PPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTS---VERHVVTPQLSYELT 212
PP ++ +G ++ VTW P + ++ ++ + Y E + + LT
Sbjct: 116 PPTDLRFTNIGPDTMRVTWAPP--PSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLT 173
Query: 213 GLSHFTLYSIWVVAHNGNGAGTTSQELSVQT 243
L T Y + V + T + +T
Sbjct: 174 NLLPGTEYVVSVSSVYEQHESTPLRG-RQKT 203
Score = 112 bits (281), Expect = 2e-28
Identities = 39/218 (17%), Positives = 75/218 (34%), Gaps = 26/218 (11%)
Query: 228 NGNGAGTTSQELSVQTLSDKPSEPP--------ANSITVRWQPPSRRGQNGIITGYKLRY 279
+ + S L + + +P +SI +RW P + I GY++
Sbjct: 3 SSHHHHHHSSGLVPRGSHMEVPQPTDLSFVDITDSSIGLRWTPL----NSSTIIGYRITV 58
Query: 280 KKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQD 339
+ Y +TGL Y I ++ + G T
Sbjct: 59 VAAG-EGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLT-------- 109
Query: 340 LGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQI-LDV 398
+ T P L+ GP ++ V+W PP + F + + +E V ++ +
Sbjct: 110 --QQTAVPPPTDLRFTNIGPDTMRVTWAPPPSIDL--TNFLVRYSPVKNEEDVAELSISP 165
Query: 399 KQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESLRT 436
+ +T L P ++YV+S+ + E + +T
Sbjct: 166 SDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKT 203
Score = 110 bits (277), Expect = 7e-28
Identities = 34/219 (15%), Positives = 70/219 (31%), Gaps = 17/219 (7%)
Query: 427 GPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRH 486
G + + P + + P L ++ S+ + W T +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMEVPQPTDLSFVDITDSSIGLRW---TPLN-----SSTIIG 53
Query: 487 YLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTT 546
Y + ++++++ + L P Y+ +V V+ ES + T
Sbjct: 54 YRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPT-----TL 108
Query: 547 QEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVV 606
+ P DL + P + + W PP + ++ + + YS N + E S+
Sbjct: 109 TQQTAVPPPTDLRFTNI--GPDTMRVTWAPP--PSIDLTNFLVRYSPVKNEEDVAELSIS 164
Query: 607 GDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWT 645
+ + L PG Y + + S T
Sbjct: 165 PSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKT 203
Score = 92.6 bits (230), Expect = 1e-21
Identities = 47/203 (23%), Positives = 77/203 (37%), Gaps = 21/203 (10%)
Query: 344 TVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGW-GKGVPDEFVKQILDVKQRS 402
P L SSI + WTP +I G+ + G + +D
Sbjct: 21 MEVPQPTDLSFVDITDSSIGLRWTPLNSSTI--IGYRITVVAAGEGIPIFEDFVDSSVGY 78
Query: 403 DEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPY 462
+TGLEP DY IS+ G+ +L + P PP L+ + P
Sbjct: 79 YTVTGLEPGIDYDISVYTVKNGGEST--PTTLTQQTAVP--------PPTDLRFTNIGPD 128
Query: 463 SMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQ 522
+MR++W P + ++LVRY+ + + I+ + +V + +L P T+
Sbjct: 129 TMRVTW---APPP-----SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTE 180
Query: 523 YEFTVKVVRAKKESEWSMIVLNT 545
Y +V V + ES T
Sbjct: 181 YVVSVSSVYEQHESTPLRGRQKT 203
Score = 69.9 bits (171), Expect = 1e-13
Identities = 27/110 (24%), Positives = 38/110 (34%), Gaps = 6/110 (5%)
Query: 539 SMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTD 598
S +V + P P DL+ V S + L W P + I GY I +
Sbjct: 12 SGLVPRGSHMEVPQ--PTDLSFVDIT--DSSIGLRWTPLN--SSTIIGYRITVVAAGEGI 65
Query: 599 QWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTAS 648
E+ V V GLEPG Y + + G S ++ T
Sbjct: 66 PIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQTAVP 115
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 114
Score = 115 bits (290), Expect = 1e-30
Identities = 43/107 (40%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
Query: 545 TTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNT--DQWIE 602
++ + P SAP+DLTV+++EG P V ++WQPP ANG+I+ Y + Y+ D N D WI
Sbjct: 2 SSGSSGPTSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIM 61
Query: 603 ESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649
E++ GD+++ + L +YYF+I+ARNS G P S + + T
Sbjct: 62 ETISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLKV 108
Score = 79.0 bits (195), Expect = 7e-18
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
Query: 57 PSAPQ--SVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYN----ATAR 110
SAP+ +V PR+V + W PP G+I Y + Y + + + + R
Sbjct: 9 TSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETISGDR 68
Query: 111 VEAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPS 155
+ I L+ +T Y FR+ A N+ G G S + +T PS
Sbjct: 69 LTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLKVS-GPS 112
Score = 77.4 bits (191), Expect = 3e-17
Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 9/112 (8%)
Query: 149 PEDHVPSPPLNVNIPVV--GTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTS-----VERH 201
S P ++ + +++V+W+ P NG+I Y L+Y + +
Sbjct: 4 GSSGPTSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMET 63
Query: 202 VVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPA 253
+ +L++++ L+ T+Y + A N G G S + +TL P +
Sbjct: 64 ISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLKVSG--PSS 113
Score = 77.0 bits (190), Expect = 4e-17
Identities = 32/105 (30%), Positives = 44/105 (41%), Gaps = 14/105 (13%)
Query: 243 TLSDKPSEPPAN-----------SITVRWQPPSRRGQNGIITGYKLRYKKK-DVKKDKGE 290
+ S P+ P + ++ V WQPP NG IT Y L Y ++ D
Sbjct: 3 SGSSGPTSAPKDLTVITREGKPRAVIVSWQPPLE--ANGKITAYILFYTLDKNIPIDDWI 60
Query: 291 TVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAET 335
T +GDR + I LN T Y ++ A N G GP +D T
Sbjct: 61 METISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRT 105
Score = 60.5 bits (147), Expect = 2e-11
Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 351 SLKARPGGPSSIIVSWTPPADQSIMVRGFTLGW---GKGVPDEFVKQILDVKQRSDEITG 407
++ R G P ++IVSW PP + + + + L + D+++ + + + + +I
Sbjct: 16 TVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETISGDRLTHQIMD 75
Query: 408 LEPNSDYVISLRAFNEMGDGPQ-KYESLRTRNEPPPQA 444
L ++ Y ++A N G GP RT P +
Sbjct: 76 LNLDTMYYFRIQARNSKGVGPLSDPILFRTLKVSGPSS 113
Score = 48.2 bits (115), Expect = 5e-07
Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 12/121 (9%)
Query: 436 TRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHL- 494
+ + P APK L + + P ++ +SW P + +G+ Y++ YT
Sbjct: 3 SGSSGPTSAPKDLT----VITREGKPRAVIVSW---QPPLE--ANGKI-TAYILFYTLDK 52
Query: 495 -LGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPAS 553
+ + + I+ + + QI DL T Y F ++ +K S +L T + + S
Sbjct: 53 NIPIDDWIMETISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLKVSGPS 112
Query: 554 A 554
+
Sbjct: 113 S 113
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 126
Score = 112 bits (282), Expect = 2e-29
Identities = 62/126 (49%), Positives = 83/126 (65%), Gaps = 3/126 (2%)
Query: 320 NVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGF 379
+ SGPATDW SAETF DL E VP++P+SL RP +SI+VSWTPP +Q+I+VRG+
Sbjct: 2 SSGSSGPATDWLSAETFESDLDETRVPEVPSSLHVRPL-VTSIVVSWTPPENQNIVVRGY 60
Query: 380 TLGWGKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTR-N 438
+G+G G P +D KQR I L+P+S YVI+L+AFN +G+G YES TR +
Sbjct: 61 AIGYGIGSPHAQT-IKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRPH 119
Query: 439 EPPPQA 444
P +
Sbjct: 120 TSGPSS 125
Score = 87.9 bits (218), Expect = 8e-21
Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 7/124 (5%)
Query: 132 NALGAGLASSALPVKT----EPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHY 187
++ +G A+ L +T E VP P ++++ +S++V+W P N ++ Y
Sbjct: 2 SSGSSGPATDWLSAETFESDLDETRVPEVPSSLHV-RPLVTSIVVSWTPPENQNIVVRGY 60
Query: 188 TLYYLEEDTSVERHVVTP-QLSYELTGLSHFTLYSIWVVAHNGNGAGT-TSQELSVQTLS 245
+ Y + V Q Y + L + Y I + A N G G + + +
Sbjct: 61 AIGYGIGSPHAQTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRPHT 120
Query: 246 DKPS 249
PS
Sbjct: 121 SGPS 124
Score = 78.3 bits (193), Expect = 2e-17
Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 18/114 (15%)
Query: 228 NGNGAGTTSQELSVQTLSDKPSE-----PPAN--------SITVRWQPPSRRGQNGIITG 274
+ +G + LS +T E P++ SI V W PP QN ++ G
Sbjct: 2 SSGSSGPATDWLSAETFESDLDETRVPEVPSSLHVRPLVTSIVVSWTPPEN--QNIVVRG 59
Query: 275 YKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPAT 328
Y + Y +T+ +R Y I L+ S+ Y I L A N G G
Sbjct: 60 YAIGYGIGS---PHAQTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPL 110
Score = 75.6 bits (186), Expect = 1e-16
Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 7/113 (6%)
Query: 536 SEWSMIV--LNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSS 593
++W + E P L V + + ++W PP++ N + GY I Y
Sbjct: 10 TDWLSAETFESDLDETRVPEVPSSLHVRP---LVTSIVVSWTPPENQNIVVRGYAIGYG- 65
Query: 594 DPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTT 646
+ V + + L+P Y +KA N+ G T
Sbjct: 66 -IGSPHAQTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTR 117
Score = 72.5 bits (178), Expect = 2e-15
Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 2/108 (1%)
Query: 48 EAINETLTLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNA 107
E+ + +P P S+ S+ + W PP + Y + Y +
Sbjct: 19 ESDLDETRVPEVPSSLHV-RPLVTSIVVSWTPPENQNIVVRGYAIGYGIGSPHAQTIKVD 77
Query: 108 TARVEAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPS 155
+ I+ L P++ Y + A+N +G G+ T P PS
Sbjct: 78 YKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYE-SAVTRPHTSGPS 124
Score = 51.7 bits (124), Expect = 3e-08
Identities = 26/134 (19%), Positives = 43/134 (32%), Gaps = 10/134 (7%)
Query: 422 NEMGDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHG 481
+ GP E +V P L L S+ +SW T P +
Sbjct: 2 SSGSSGPATDWLSAETFESDLDETRVPEVPSSLHVRPLVT-SIVVSW---TPP---ENQN 54
Query: 482 EEGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESE-WSM 540
R Y + Y G+ + + ++ I +L PS+ Y T+K E
Sbjct: 55 IVVRGYAIGYGI--GSPHAQTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYE 112
Query: 541 IVLNTTQEAAPASA 554
+ + P+S
Sbjct: 113 SAVTRPHTSGPSSG 126
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 124
Score = 112 bits (282), Expect = 2e-29
Identities = 49/121 (40%), Positives = 69/121 (57%), Gaps = 12/121 (9%)
Query: 224 VVAHNGNGAGTTSQELSVQTLSDKPSEPPAN---------SITVRWQPPSRRGQNGIITG 274
+ N G G ++ +++V TLSD PS PP N SI V W PP QNG ITG
Sbjct: 4 GSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITG 63
Query: 275 YKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAE 334
YK+R++K +GE T + Y+ TGL K + Y ++ AM VNG+GP ++W++AE
Sbjct: 64 YKIRHRKTT---RRGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAE 120
Query: 335 T 335
T
Sbjct: 121 T 121
Score = 102 bits (256), Expect = 6e-26
Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Query: 128 VVAYNALGAGLASSALPVKTEPEDHVPS-PPLNVNIPVVGTSSLLVTWEKPTVT--NGEI 184
+ N G G+++ + V T D VPS PP NV++ VV + S+ V+W P NG I
Sbjct: 4 GSSGNRYGPGVSTDDITVVT-LSD-VPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFI 61
Query: 185 KHYTLYYLEEDTSVERHVVTP-QLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQT 243
Y + + + E + P L Y TGL + YS V A NG G S + +T
Sbjct: 62 TGYKIRHRKTTRRGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAET 121
Query: 244 LSD 246
+
Sbjct: 122 PEN 124
Score = 91.2 bits (227), Expect = 4e-22
Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
Query: 535 ESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPP--KSANGQISGYTILYS 592
+ + T P++ P+++++ + + ++W PP + NG I+GY I +
Sbjct: 12 PGVSTDDITVVTLSDVPSAPPQNVSLEV--VNSRSIKVSWLPPPSGTQNGFITGYKIRHR 69
Query: 593 SDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649
T + E++ + + GLE G Y F++ A G+ P S+ T T +
Sbjct: 70 --KTTRRGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAETPEN 124
Score = 80.4 bits (199), Expect = 3e-18
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 58 SAPQSVSAIMVGPRSVALRWLPP--TLPRGEILVYCVLYKREGSERERAYNATARVEAII 115
+ PQ+VS +V RS+ + WLPP G I Y + +++ E + +
Sbjct: 30 APPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRRGEMETLEPNNLWYLF 89
Query: 116 QGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPED 151
GL + Y+F+V A G G S+ +T PE+
Sbjct: 90 TGLEKGSQYSFQVSAMTVNGTGPPSNWYTAET-PEN 124
Score = 67.3 bits (165), Expect = 1e-13
Identities = 29/118 (24%), Positives = 42/118 (35%), Gaps = 10/118 (8%)
Query: 314 IKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDI-PASLKARPGGPSSIIVSWTPPADQ 372
+ N G G +TD + T S VP P ++ SI VSW PP
Sbjct: 2 SSGSSGNRYGPGVSTDDITVVTLS------DVPSAPPQNVSLEVVNSRSIKVSWLPPPSG 55
Query: 373 SI--MVRGFTLGWGKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGP 428
+ + G+ + + + L+ TGLE S Y + A G GP
Sbjct: 56 TQNGFITGYKIRH-RKTTRRGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGP 112
Score = 63.1 bits (154), Expect = 3e-12
Identities = 27/133 (20%), Positives = 42/133 (31%), Gaps = 11/133 (8%)
Query: 416 ISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPD 475
S + N G G + P AP P + EV++ S+++SW P
Sbjct: 2 SSGSSGNRYGPGVSTDDITVVTLSDVPSAP-----PQNVSLEVVNSRSIKVSW---LPPP 53
Query: 476 QFQQHGEEGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKE 535
Q+G Y +R+ + + N L +QY F V +
Sbjct: 54 SGTQNGFI-TGYKIRHRK--TTRRGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGT 110
Query: 536 SEWSMIVLNTTQE 548
S T E
Sbjct: 111 GPPSNWYTAETPE 123
Score = 29.6 bits (67), Expect = 1.6
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 626 KIKARNSAGSSPYSSTVTWTTASDM 650
+ N G + +T T SD+
Sbjct: 3 SGSSGNRYGPGVSTDDITVVTLSDV 27
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 110 bits (277), Expect = 7e-29
Identities = 43/119 (36%), Positives = 68/119 (57%), Gaps = 4/119 (3%)
Query: 135 GAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEE 194
G+ +S + + E + +P P N+ +S+ VTWE P NGEI++Y LYY+E+
Sbjct: 1 GSSGSSGRVETQPEVQ--LPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEK 58
Query: 195 DTSVERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPA 253
T E+ V SY + GL +T YS VVA+N +G G ++ +++V+TLSD P +
Sbjct: 59 GTDKEQDVDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSDSG--PSS 115
Score = 92.0 bits (229), Expect = 2e-22
Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 6/115 (5%)
Query: 535 ESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSD 594
S S V + P +L + P+ + + W+ P S NG+I Y + Y
Sbjct: 2 SSGSSGRVETQPEVQLP-GPAPNLRAYAA--SPTSITVTWETPVSGNGEIQNYKLYYME- 57
Query: 595 PNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649
E+ V S + GL+ Y F++ A N G + V T SD
Sbjct: 58 --KGTDKEQDVDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSD 110
Score = 90.9 bits (226), Expect = 5e-22
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 55 TLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAI 114
LP ++ A P S+ + W P GEI Y + Y +G+++E+ + ++
Sbjct: 16 QLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQDVDVSSH-SYT 74
Query: 115 IQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPP 157
I GL T Y+FRVVAYN G G+++ + V+T + P
Sbjct: 75 INGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSD---SGPS 114
Score = 83.5 bits (207), Expect = 2e-19
Identities = 33/115 (28%), Positives = 44/115 (38%), Gaps = 14/115 (12%)
Query: 231 GAGTTSQELSVQTLSDKPSEPP--------ANSITVRWQPPSRRGQNGIITGYKLRYKKK 282
G+ +S + Q P P SITV W+ P NG I YKL Y +K
Sbjct: 1 GSSGSSGRVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSG--NGEIQNYKLYYMEK 58
Query: 283 DVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFS 337
+ Y I GL K T Y ++ A N +G G +T + T S
Sbjct: 59 G----TDKEQDVDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLS 109
Score = 72.4 bits (178), Expect = 2e-15
Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 323 GSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLG 382
GS ++ + E +P +L+A P+SI V+W P + ++ + L
Sbjct: 1 GSSGSSGRVETQP------EVQLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLY 54
Query: 383 WGKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQ-KYESLRTRNEPP 441
+ + D+ Q +DV S I GL+ ++Y + A+N+ G G ++RT ++
Sbjct: 55 YMEKGTDKE--QDVDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSDSG 112
Query: 442 P 442
P
Sbjct: 113 P 113
Score = 56.6 bits (137), Expect = 5e-10
Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 15/130 (11%)
Query: 425 GDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEG 484
G S R +P Q P P L++ SP S+ ++W + E
Sbjct: 1 GSSG---SSGRVETQPEVQLPG---PAPNLRAYAASPTSITVTW------ETPVSGNGEI 48
Query: 485 RHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLN 544
++Y + Y + + ++ + S IN L+ T+Y F V + V
Sbjct: 49 QNYKLYYME---KGTDKEQDVDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAV 105
Query: 545 TTQEAAPASA 554
T + S+
Sbjct: 106 RTLSDSGPSS 115
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling
complex, extracellular space, IM system receptor; HET:
NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Length = 414
Score = 118 bits (296), Expect = 9e-29
Identities = 50/402 (12%), Positives = 112/402 (27%), Gaps = 43/402 (10%)
Query: 58 SAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAI--- 114
+PQ V ++ + LRW G + + Y++ G + + + +
Sbjct: 9 KSPQKVEVDIIDDNFI-LRWNRSDESVGNV-TFSFDYQKTGMDNWIKLSGCQNITSTKCN 66
Query: 115 --IQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLV 172
L+ R+ A +S P P V++ + ++
Sbjct: 67 FSSLKLNVYEEIKLRIRAEKE---NTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIH 123
Query: 173 -----TWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTPQLSYELTGLSHFTLYSIWVVAH 227
+G Y+L + + VE + +++ LS T Y + V A
Sbjct: 124 ISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAA 183
Query: 228 NGNGAGTTSQELSVQTLSDKPSEPPA----------NSITVRWQPPSRRGQNGI--ITGY 275
+ +E P + ++W + + +
Sbjct: 184 LLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAF 243
Query: 276 KLRYKKKDVKKDKGETVTTAGDRRLYVIT-GLNKSTTYQIKLWAMNVNGSGPATDWFSAE 334
R + K K V + + Y +++ A + N + ++ +
Sbjct: 244 LKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFD 303
Query: 335 TFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQ------SIMVRGFTLGWGKGVP 388
T E +P R S + P + + + +
Sbjct: 304 T------EIQAFLLPPVFNIRSLS-DSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTS 356
Query: 389 DEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQK 430
+ K + K+ + L+P + Y + RA +
Sbjct: 357 NAERK--IIEKKTDVTVPNLKPLTVYCVKARAHTMDEKLNKS 396
Score = 108 bits (271), Expect = 2e-25
Identities = 52/422 (12%), Positives = 110/422 (26%), Gaps = 41/422 (9%)
Query: 155 SPPLNVNIPVVGTSSLLVTWEKPTVTNGEIK---HYTLYYLEEDTSVERHVVTPQLSYEL 211
P V + ++ + +L W + + G + Y ++ +
Sbjct: 9 KSPQKVEVDIIDDNFIL-RWNRSDESVGNVTFSFDYQKTGMDNWIKLSGCQNITSTKCNF 67
Query: 212 T--GLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPP-------ANSITVRWQP 262
+ L+ + + + A N + + S PP +I + P
Sbjct: 68 SSLKLNVYEEIKLRIRAEKENT-SSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISP 126
Query: 263 PSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVN 322
++ + G Y K G + I L+ TTY +K+ A +
Sbjct: 127 GTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLT 186
Query: 323 GSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLG 382
+ P + ++ W +
Sbjct: 187 SWKIGVYSPVHCIKTTVEN----ELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHA 242
Query: 383 WGKGVPDEFVKQILDVKQ-------RSDEITGLEPNSDYVISLRAFNEMGDGP-QKYESL 434
+ K P + + + + + Y++ ++A + +
Sbjct: 243 FLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKF 302
Query: 435 RTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHL 494
T + P I + S I + Y + +
Sbjct: 303 DTEIQAFLLPPVFNIRSLS--------DSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWE- 353
Query: 495 LGASNPRYKYINANITSVQINDLRPSTQYEFTVKVV----RAKKESEWSMIVLNTTQEAA 550
SN K I T V + +L+P T Y + + K S +S V T+
Sbjct: 354 -NTSNAERK-IIEKKTDVTVPNLKPLTVYCVKARAHTMDEKLNKSSVFSDAVCEKTKPGN 411
Query: 551 PA 552
+
Sbjct: 412 TS 413
Score = 108 bits (270), Expect = 3e-25
Identities = 44/303 (14%), Positives = 88/303 (29%), Gaps = 25/303 (8%)
Query: 53 TLTLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVE 112
+ L + +++ + ++ W G Y ++ + S E
Sbjct: 110 EVHLEAEDKAIVIHISPGTKDSVMWALD----GLSFTYSLVIWKNSSGVEERIENIYS-R 164
Query: 113 AIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLV 172
I L P T+Y +V A + + + PP V + ++
Sbjct: 165 HKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVL 224
Query: 173 TWEKPTVTNGEIKHYTLYYLEEDTS--------VERHVVTPQLSYELT-GLSHFTLYSIW 223
W+ + +L+ + + + +Y +
Sbjct: 225 KWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLR 284
Query: 224 VVAHNGNGAGTTSQELSVQTLSDKPSEPP-------ANSITVRWQPPSRRGQNGIITGYK 276
V A +GN S+E+ T PP ++S + P + G +I Y
Sbjct: 285 VQASDGNNTSFWSEEIKFDTEIQAFLLPPVFNIRSLSDSFHIYIGAPKQSGNTPVIQDYP 344
Query: 277 LRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMN----VNGSGPATDWFS 332
L Y+ + + + L T Y +K A +N S +D
Sbjct: 345 LIYEIIFWENTSNAERKIIEKKTDVTVPNLKPLTVYCVKARAHTMDEKLNKSSVFSDAVC 404
Query: 333 AET 335
+T
Sbjct: 405 EKT 407
Score = 101 bits (251), Expect = 5e-23
Identities = 61/409 (14%), Positives = 115/409 (28%), Gaps = 38/409 (9%)
Query: 257 TVRWQPPSRRGQNGIITGYKLRYKKKDVKK--DKGETVTTAGDRRLYVITGLNKSTTYQI 314
+RW N + Y+K + + + LN ++
Sbjct: 24 ILRWNRSDESVGN---VTFSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKL 80
Query: 315 KLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSI 374
++ A N S W+ ++F+ P + +I++ +P S+
Sbjct: 81 RIRAEKENTS----SWYEVDSFTPFR---KAQIGPPEVHLEAE-DKAIVIHISPGTKDSV 132
Query: 375 MVRGFTLGWGKGV----PDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQK 430
M L + + V++ ++ +I L P + Y + ++A
Sbjct: 133 MWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGV 192
Query: 431 YESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVR 490
Y + PP ++ V + + + W T FQ
Sbjct: 193 YSPVHCIKTTVENELP---PPENIEVSVQNQ-NYVLKWDYTYANMTFQVQWLHAFLKRNP 248
Query: 491 YTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAA 550
HL V ++ Y V+ S WS + T+ A
Sbjct: 249 GNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQA 308
Query: 551 PASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQIS------GYTILYSSDPNTDQWIEES 604
P V + ++ PK + Y I++ E
Sbjct: 309 FLLPP----VFNIRSLSDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFW---ENTSNAERK 361
Query: 605 VVGDKMSTNVRGLEPGRIYYFKIKARNSAG----SSPYSSTVTWTTASD 649
++ K V L+P +Y K +A SS +S V T
Sbjct: 362 IIEKKTDVTVPNLKPLTVYCVKARAHTMDEKLNKSSVFSDAVCEKTKPG 410
Score = 89.3 bits (220), Expect = 6e-19
Identities = 37/247 (14%), Positives = 72/247 (29%), Gaps = 21/247 (8%)
Query: 22 TPPNQYHLTSTTSMTASPLDTSTGSIEAINETLTLPSAPQSVSAIMVGPRSVALRWLPPT 81
+P Y L ++ S + I T+ P + V ++ L+W
Sbjct: 171 SPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTY 230
Query: 82 LPRGEILVYCVLYKREGSERE--------RAYNATARVEAIIQGLHPNTSYTFRVVAYNA 133
+ + + + N Q + Y RV A +
Sbjct: 231 ANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDG 290
Query: 134 LGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKP------TVTNGEIKHY 187
S + TE + + P N+ + S + P V Y
Sbjct: 291 NNTSFWSEEIKFDTEIQAFLLPPVFNI---RSLSDSFHIYIGAPKQSGNTPVIQDYPLIY 347
Query: 188 TLYYLEEDTSVERHVVTPQLSYELTGLSHFTLYSIWVVAHN----GNGAGTTSQELSVQT 243
+ + E ++ ER ++ + + L T+Y + AH N + S + +T
Sbjct: 348 EIIFWENTSNAERKIIEKKTDVTVPNLKPLTVYCVKARAHTMDEKLNKSSVFSDAVCEKT 407
Query: 244 LSDKPSE 250
S+
Sbjct: 408 KPGNTSK 414
Score = 80.4 bits (197), Expect = 4e-16
Identities = 44/357 (12%), Positives = 99/357 (27%), Gaps = 31/357 (8%)
Query: 360 SSIIVSWTPPADQ----SIMVRGFTLGWGKGVPDEFVKQILDVKQRSDEITGLEPNSDYV 415
+ I+ W + + G + + I + + L +
Sbjct: 21 DNFILRWNRSDESVGNVTFSFDYQKTGMDNWIKLSGCQNI-TSTKCNFSSLKLNVYEEIK 79
Query: 416 ISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPD 475
+ +RA E + +S + P+V + ++ I T
Sbjct: 80 LRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEA--------EDKAIVIHISPGTKDS 131
Query: 476 QFQQHGEEGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKE 535
Y + S+ + I + +I L P T Y VK
Sbjct: 132 VMWALDGLSFTYSLVIWK---NSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLTSW 188
Query: 536 SEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDP 595
++ + P + + + V L W + + +
Sbjct: 189 KIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYV-LKWDYTYANMTFQVQWLHAFLKRN 247
Query: 596 NTDQWIEESVVGDKMSTNVR------GLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649
+ + + D + + IY +++A + +S +S + + T
Sbjct: 248 PGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQ 307
Query: 650 MQEAGGIPNSNQVSNTMILYVKGNTGGKQQAPATQINPPDLWIHHDQMELKAIEKSS 706
+ N +S++ +Y+ AP N P + + E+ E +S
Sbjct: 308 AFLLPPVFNIRSLSDSFHIYI--------GAPKQSGNTPVIQDYPLIYEIIFWENTS 356
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 109 bits (274), Expect = 1e-28
Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 147 TEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTPQ 206
+ P P N+ +S+L+TWE P NG ++ Y L+ E T E+++
Sbjct: 2 SSGSS-GPGPVENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCTEVSTGKEQNIEVDG 60
Query: 207 LSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPA 253
LSY+L GL FT YS+ +A+N G G ++ +++V TLSD P +
Sbjct: 61 LSYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTLSDSG--PSS 105
Score = 93.1 bits (232), Expect = 5e-23
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 55 TLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAI 114
+ P +++ A+ P S+ + W PP G + Y + + +E+
Sbjct: 6 SGPGPVENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCTEVSTGKEQNIEVDGL-SYK 64
Query: 115 IQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSP 156
++GL T Y+ R +AYN G G+++ + V T D PS
Sbjct: 65 LEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVT-LSDSGPSS 105
Score = 91.2 bits (227), Expect = 3e-22
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
Query: 545 TTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEES 604
++ + P +L VS P+ + + W+PP ANG + GY + + E++
Sbjct: 2 SSGSSGP-GPVENLQAVST--SPTSILITWEPPAYANGPVQGYRLFCT---EVSTGKEQN 55
Query: 605 VVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649
+ D +S + GL+ Y + A N G + +T T SD
Sbjct: 56 IEVDGLSYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTLSD 100
Score = 75.0 bits (185), Expect = 1e-16
Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 14/103 (13%)
Query: 243 TLSDKPSEPP--------ANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTT 294
+ S P SI + W+PP+ NG + GY+L + G+
Sbjct: 3 SGSSGPGPVENLQAVSTSPTSILITWEPPAY--ANGPVQGYRLFCTEVS----TGKEQNI 56
Query: 295 AGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFS 337
D Y + GL K T Y ++ A N G G +TD + T S
Sbjct: 57 EVDGLSYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTLS 99
Score = 70.0 bits (172), Expect = 9e-15
Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 344 TVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSD 403
+ P +L+A P+SI+++W PPA + V+G+ L + +Q ++V S
Sbjct: 6 SGPGPVENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCTE--VSTGKEQNIEVDGLSY 63
Query: 404 EITGLEPNSDYVISLRAFNEMGDGPQ-KYESLRTRNEPPPQA 444
++ GL+ ++Y + A+N G G ++ T ++ P +
Sbjct: 64 KLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTLSDSGPSS 105
Score = 49.9 bits (120), Expect = 8e-08
Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 9/105 (8%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANI 509
P L++ SP S+ I+W + + Y + T + S + + I +
Sbjct: 10 PVENLQAVSTSPTSILITW------EPPAYANGPVQGYRLFCTEV---STGKEQNIEVDG 60
Query: 510 TSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASA 554
S ++ L+ T+Y + + T + S+
Sbjct: 61 LSYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTLSDSGPSS 105
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons,
receptor chain, ifnar1, fibronect III, type I interferon
receptor chain; HET: NAG; 1.90A {Homo sapiens}
Length = 306
Score = 113 bits (283), Expect = 7e-28
Identities = 41/307 (13%), Positives = 93/307 (30%), Gaps = 34/307 (11%)
Query: 58 SAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAI--- 114
+PQ V ++ + LRW G + + Y++ G + + + +
Sbjct: 5 KSPQKVEVDIIDDNFI-LRWNRSDESVGNV-TFSFDYQKTGMDNWIKLSGCQNITSTKCN 62
Query: 115 --IQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLV 172
L+ R+ A +S P P V++ ++++
Sbjct: 63 FSSLKLNVYEEIKLRIRAEKE---NTSSWYEVDSFTPFRKAQIGPPEVHLEAED-KAIVI 118
Query: 173 TWEKPTV------TNGEIKHYTLYYLEEDTSVERHVVTPQLSYELTGLSHFTLYSIWVVA 226
T +G Y+L + + VE + +++ LS T Y + V A
Sbjct: 119 HISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKA 178
Query: 227 HN--GNGAGTTSQELSVQTLSDKPSEPPAN--------SITVRWQPPSRRGQNGIITGYK 276
G S ++T + PP N + ++W +
Sbjct: 179 ALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANM--TFQVQWL 236
Query: 277 LRYKKKDVKKDKGETVTTAG-----DRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWF 331
+ K++ + + + + Y +++ A + N + ++
Sbjct: 237 HAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEI 296
Query: 332 SAETFSQ 338
+T Q
Sbjct: 297 KFDTEIQ 303
Score = 94.6 bits (234), Expect = 2e-21
Identities = 31/293 (10%), Positives = 78/293 (26%), Gaps = 25/293 (8%)
Query: 155 SPPLNVNIPVVGTSSLLVTWEKPTVTNGEIK---HYTLYYLEEDTSVERHVVTPQLSYEL 211
P V + ++ + +L W + + G + Y ++ +
Sbjct: 5 KSPQKVEVDIIDDNFIL-RWNRSDESVGNVTFSFDYQKTGMDNWIKLSGCQNITSTKCNF 63
Query: 212 T--GLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPP-------ANSITVRWQP 262
+ L+ + + + A N + + S PP +I + P
Sbjct: 64 SSLKLNVYEEIKLRIRAEKENT-SSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISP 122
Query: 263 PSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVN 322
++ + G Y K G + I L+ TTY +K+ A +
Sbjct: 123 GTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLT 182
Query: 323 GSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLG 382
+ + P + + + ++ W +
Sbjct: 183 SWKI-GVYSPVHCIKTTVENELPPPENIEVSVQ---NQNYVLKWDYTYANMTFQVQWLHA 238
Query: 383 WGKGVPDEFVKQILDV-------KQRSDEITGLEPNSDYVISLRAFNEMGDGP 428
+ K P + + + + + Y++ ++A +
Sbjct: 239 FLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSF 291
Score = 86.9 bits (214), Expect = 9e-19
Identities = 36/301 (11%), Positives = 82/301 (27%), Gaps = 31/301 (10%)
Query: 360 SSIIVSWTPPADQ----SIMVRGFTLGWGKGVPDEFVKQILDVKQRSDEIT--GLEPNSD 413
+ I+ W + + G + ++ + L +
Sbjct: 17 DNFILRWNRSDESVGNVTFSFDYQKTGMDN---WIKLSGCQNITSTKCNFSSLKLNVYEE 73
Query: 414 YVISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTL 473
+ +RA E + +S + P+V + ++ I T
Sbjct: 74 IKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAED--------KAIVIHISPGTK 125
Query: 474 PDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVV--R 531
Y + S+ + I + +I L P T Y VK
Sbjct: 126 DSVMWALDGLSFTYSLVIWK---NSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLT 182
Query: 532 AKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILY 591
+ K +S + T P ++ V + L W + + +
Sbjct: 183 SWKIGVYSPVHCIKTTVENELPPPENIEVSVQ---NQNYVLKWDYTYANMTFQVQWLHAF 239
Query: 592 SSDPNTDQWIEESVVGDKMSTN------VRGLEPGRIYYFKIKARNSAGSSPYSSTVTWT 645
+ + + D + + + IY +++A + +S +S + +
Sbjct: 240 LKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFD 299
Query: 646 T 646
T
Sbjct: 300 T 300
Score = 72.3 bits (176), Expect = 7e-14
Identities = 37/207 (17%), Positives = 67/207 (32%), Gaps = 21/207 (10%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPT------LPRGEILVYCVLYKREGSERERAYNATAR 110
P V + +++ + P T G Y ++ + S E
Sbjct: 101 QIGPPEVH-LEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYS 159
Query: 111 VEAIIQGLHPNTSYTFRVVAYNALGA--GLASSALPVKTEPEDHVPSPPLNVNIPVVGTS 168
I L P T+Y +V A G+ S +KT E+ +P PP N+ + V +
Sbjct: 160 -RHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELP-PPENIEVSVQNQN 217
Query: 169 SLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHV---------VTPQLSYELTGLSHFTL 219
+L W+ + +L+ + + V + +
Sbjct: 218 YVL-KWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGI 276
Query: 220 YSIWVVAHNGNGAGTTSQELSVQTLSD 246
Y + V A +GN S+E+ T
Sbjct: 277 YLLRVQASDGNNTSFWSEEIKFDTEIQ 303
Score = 47.6 bits (112), Expect = 8e-06
Identities = 30/190 (15%), Positives = 56/190 (29%), Gaps = 19/190 (10%)
Query: 486 HYLVRYTHLLGASNPRYKYINANITSVQIN----DLRPSTQYEFTVKVVRAKKESEWSMI 541
+ Y G N NITS + N L + + ++ + S W +
Sbjct: 34 TFSFDYQKT-GMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRIRAEKEN-TSSWYEV 91
Query: 542 VLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKS------ANGQISGYTILYSSDP 595
T A P V E + + ++ P +G Y+++
Sbjct: 92 DSFTPFRKAQIGPPE----VHLEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIW--- 144
Query: 596 NTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASDMQEAGG 655
+EE + + L P Y K+KA + + ++
Sbjct: 145 KNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELP 204
Query: 656 IPNSNQVSNT 665
P + +VS
Sbjct: 205 PPENIEVSVQ 214
Score = 39.1 bits (90), Expect = 0.004
Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 9/97 (9%)
Query: 549 AAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGD 608
A P +P+ + V D + + L W + G ++ ++ Y D WI+ S +
Sbjct: 1 ADPLKSPQKVEVDI--IDDNFI-LRWNRSDESVGNVT-FSFDY-QKTGMDNWIKLSGCQN 55
Query: 609 KMSTN----VRGLEPGRIYYFKIKARNSAGSSPYSST 641
ST L +I+A SS Y
Sbjct: 56 ITSTKCNFSSLKLNVYEEIKLRIRAEKENTSSWYEVD 92
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 132
Score = 107 bits (269), Expect = 1e-27
Identities = 61/140 (43%), Positives = 84/140 (60%), Gaps = 18/140 (12%)
Query: 231 GAGTTSQELSVQTLSDKPSEPPAN---------SITVRWQPPSRRGQNGIITGYKLRYKK 281
G+ +S +++V+TLSD PS P N SI + WQPP+ QNG ITGYK+RY+K
Sbjct: 1 GSSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRK 60
Query: 282 KDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLG 341
K D ET+ + G + +I GL++ T Y ++ A+ +NG+GPATDW SAETF DL
Sbjct: 61 ASRKSDVTETLVS-GTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLD 119
Query: 342 EFTVPDIPASLKARPGGPSS 361
E VP++ GPSS
Sbjct: 120 ETRVPEVS--------GPSS 131
Score = 97.8 bits (244), Expect = 3e-24
Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 11/136 (8%)
Query: 135 GAGLASSALPVKTEPEDHVPS-PPLNVNIPVVGTSSLLVTWEKPTVT--NGEIKHYTLYY 191
G+ +S + V+T D VPS P N+++ V + S+++ W+ P NG+I Y + Y
Sbjct: 1 GSSGSSGDVAVRT-LSD-VPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRY 58
Query: 192 LEEDTS---VERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKP 248
+ E V QLS + GL T Y+ V A NG G + LS +T
Sbjct: 59 RKASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDL 118
Query: 249 SEPPANSITVRWQPPS 264
E ++ P S
Sbjct: 119 DETRVPEVS---GPSS 131
Score = 93.6 bits (233), Expect = 9e-23
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 4/126 (3%)
Query: 535 ESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPP--KSANGQISGYTILYS 592
S S V T P++AP++L++ + + + ++WQPP + NGQI+GY I Y
Sbjct: 2 SSGSSGDVAVRTLSDVPSAAPQNLSLEVR--NSKSIMIHWQPPAPATQNGQITGYKIRYR 59
Query: 593 SDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASDMQE 652
E V G ++S + GL+ G Y F++ A G+ P + ++ T +
Sbjct: 60 KASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLD 119
Query: 653 AGGIPN 658
+P
Sbjct: 120 ETRVPE 125
Score = 80.9 bits (200), Expect = 3e-18
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 58 SAPQSVSAIMVGPRSVALRWLPP--TLPRGEILVYCVLYKREGSERERAYN--ATARVEA 113
+APQ++S + +S+ + W PP G+I Y + Y++ + + + ++
Sbjct: 20 AAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQ 79
Query: 114 IIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVG 166
+I+GL T Y FRV A G G A+ L +T D + V+ P G
Sbjct: 80 LIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLDETRVPEVSGPSSG 132
Score = 72.8 bits (179), Expect = 2e-15
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 13/138 (9%)
Query: 323 GSGPATDWFSAETFSQDLGEFTVPDI-PASLKARPGGPSSIIVSWTPPADQSI--MVRGF 379
GS ++ + T S VP P +L SI++ W PPA + + G+
Sbjct: 1 GSSGSSGDVAVRTLSD------VPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGY 54
Query: 380 TLG-WGKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQ-KYESLRTR 437
+ + + ++ Q S I GL+ ++Y + A G GP + S T
Sbjct: 55 KIRYRKASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETF 114
Query: 438 NEPP--PQAPKVLIPPMG 453
+ P+V P G
Sbjct: 115 ESDLDETRVPEVSGPSSG 132
Score = 58.5 bits (142), Expect = 2e-10
Identities = 28/136 (20%), Positives = 42/136 (30%), Gaps = 10/136 (7%)
Query: 425 GDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEG 484
G + P A P L EV + S+ I W P Q+G+
Sbjct: 1 GSSGSSGDVAVRTLSDVPSAA-----PQNLSLEVRNSKSIMIHW---QPPAPATQNGQI- 51
Query: 485 RHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLN 544
Y +RY S+ ++ S I L T+Y F V + + +
Sbjct: 52 TGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSA 111
Query: 545 TTQEAAPASAPRDLTV 560
T E+ R V
Sbjct: 112 ETFESDL-DETRVPEV 126
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains
of fibronectin-III domains, FOU fibronectin-III domains
PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A*
3cxe_A* 1egj_A* 1c8p_A
Length = 419
Score = 113 bits (283), Expect = 4e-27
Identities = 56/353 (15%), Positives = 109/353 (30%), Gaps = 34/353 (9%)
Query: 16 MDPSSSTPPNQYHLTSTTSMTASPLDTSTGSIEAINETLTLPSAPQSVSAIMVGPRSVAL 75
+ P + +T + P + P P+ + I L
Sbjct: 68 VPRRCVIPCQSFVVTDVDYFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQ-ISTDQDHFLL 126
Query: 76 RWLPPTLP------RGEILVYCVLYKREGSERERAYN---ATARVEAIIQGLHPNTSYTF 126
W L + V+YKR E A T++ + L P+++Y
Sbjct: 127 TWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVA 186
Query: 127 RVVAYNALGAGLASS----ALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNG 182
RV A G+ L+ + V + + + P N+ G + L +WE
Sbjct: 187 RVRTRLAPGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEVRKEVAS 246
Query: 183 EIKHYTLYYLEEDTSVERHVVTPQLS--YELTGLSHFTLYSIWVVAHNGNGAGT------ 234
+ Y D + + S S T + + + G
Sbjct: 247 SVSFGLFYKPSPDAGSAVLLREEECSPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQ 306
Query: 235 -TSQELSVQTLSDKPSEPP-------ANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKK 286
E +++ + PP +S ++RW+ R ++ T ++++Y+K
Sbjct: 307 PRRAEKHIKSSVNIQMAPPSLQVTKDGDSYSLRWETMKMRYEHIDHT-FEIQYRKDTATW 365
Query: 287 DKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGS--GPATDWFSAETFS 337
+T T + L ST Y ++ G ++W A ++
Sbjct: 366 KDSKTETLQNAHS-MALPALEPSTRYWARVRVRTSRTGYNGIWSEWSEARSWD 417
Score = 97.4 bits (241), Expect = 1e-21
Identities = 58/416 (13%), Positives = 117/416 (28%), Gaps = 37/416 (8%)
Query: 254 NSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRL--YVITGLNKSTT 311
+ IT RW + L + + + + + +
Sbjct: 17 SHITCRWADTQDAQRL---VNVTLIRRVNEDLLEPVSCDLSDDMPWSACPHPRCVPRRCV 73
Query: 312 YQIKLWAMNVNGSGPATDWFSAET-FSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPA 370
+ + + T + L + P P L+ +++W+
Sbjct: 74 IPCQSFVVTDVDYFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQISTDQ-DHFLLTWSVAL 132
Query: 371 --DQSIMVRGFTLGW------GKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFN 422
QS + L + + ++ + + Q + L P+S YV +R
Sbjct: 133 GSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRL 192
Query: 423 EMGDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGE 482
G S + P P L+ + SW + ++
Sbjct: 193 APGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSW-------EVRKEVA 245
Query: 483 EGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIV 542
+ + Y A + ++ T++ + V ++ + V
Sbjct: 246 SSVSFGLFYKPSPDAGSAVLLREEECSPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSV 305
Query: 543 LNTTQEAAPAS------APRDLTVVSKEGDPSLVNLNWQPPKSANGQIS-GYTILYSSDP 595
E S AP L V +L W+ K I + I Y D
Sbjct: 306 QPRRAEKHIKSSVNIQMAPPSLQVTKDGDS---YSLRWETMKMRYEHIDHTFEIQYRKDT 362
Query: 596 NTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGS-----SPYSSTVTWTT 646
T + + + + S + LEP Y+ +++ R S S +S +W T
Sbjct: 363 ATWKDSKTETLQNAHSMALPALEPSTRYWARVRVRTSRTGYNGIWSEWSEARSWDT 418
Score = 95.8 bits (237), Expect = 3e-21
Identities = 54/418 (12%), Positives = 111/418 (26%), Gaps = 45/418 (10%)
Query: 156 PPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTPQLSYELTGLS 215
P + TS + W + TL + +E +
Sbjct: 5 PLQTLRCYNDYTSHITCRWADTQDAQRLVN-VTLIRRVNEDLLEPVSCDLSDDMPWSACP 63
Query: 216 H--------FTLYSIWVVAHNGNGAGTTSQELSVQTLSD-----KPSEP-------PANS 255
H +VV + + L + +P EP +
Sbjct: 64 HPRCVPRRCVIPCQSFVVTDVDYFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQISTDQDH 123
Query: 256 ITVRWQPPSRRGQNGIITG----YKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTT 311
+ W Q+ ++ +++ YK+ + + + + L S+T
Sbjct: 124 FLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSST 183
Query: 312 YQIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPAD 371
Y ++ GS + + P +L+ G + + SW +
Sbjct: 184 YVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEVRKE 243
Query: 372 QSIMVRGFTLGWGKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKY 431
+ V V + ++ + + + G Q
Sbjct: 244 VASSVSFGLFYKPSPDAGSAVLLREEECSPVLREGLGSLHTRHHCQIPVPDPATHG-QYI 302
Query: 432 ESLRTRNEPPP--QAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLV 489
S++ R + + + P L+ S + W +H + + +
Sbjct: 303 VSVQPRRAEKHIKSSVNIQMAPPSLQVTKDGD-SYSLRW---ETMKMRYEHID--HTFEI 356
Query: 490 RYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKE--------SEWS 539
+Y N S+ + L PST+Y VR + SEWS
Sbjct: 357 QYRKDTATWKDSKTETLQNAHSMALPALEPSTRYWAR---VRVRTSRTGYNGIWSEWS 411
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine
phosphatase delta, R-PTP-delta, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 121
Score = 104 bits (260), Expect = 1e-26
Identities = 38/116 (32%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 535 ESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSD 594
S S VL T E AP+SAPRD+ + + + W+ P+ NGQI GY + Y+ D
Sbjct: 2 SSGSSGPVLTQTSEQAPSSAPRDVQARML--SSTTILVQWKEPEEPNGQIQGYRVYYTMD 59
Query: 595 PNTDQWIE-ESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649
P + V D T + L P + Y K+ A S G P SS + T +
Sbjct: 60 PTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTG 115
Score = 95.2 bits (237), Expect = 2e-23
Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 11/114 (9%)
Query: 231 GAGTTSQELSVQTLSDKPSEPPAN---------SITVRWQPPSRRGQNGIITGYKLRYKK 281
G+ +S + QT PS P + +I V+W+ P NG I GY++ Y
Sbjct: 1 GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEE--PNGQIQGYRVYYTM 58
Query: 282 KDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAET 335
+ D ++ I L TY +K+ A G GP + T
Sbjct: 59 DPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVIT 112
Score = 89.0 bits (221), Expect = 3e-21
Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 9/124 (7%)
Query: 135 GAGLASSALPVKTEPEDHVPS-PPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLE 193
G+ +S + +T E PS P +V ++ ++++LV W++P NG+I+ Y +YY
Sbjct: 1 GSSGSSGPVLTQT-SEQ-APSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTM 58
Query: 194 EDT----SVERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPS 249
+ T + +H V + L YS+ V+A G G S ++ V T +
Sbjct: 59 DPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGSG- 117
Query: 250 EPPA 253
P +
Sbjct: 118 -PSS 120
Score = 83.2 bits (206), Expect = 2e-19
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 58 SAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAY---NATARVEAI 114
SAP+ V A M+ ++ ++W P P G+I Y V Y + ++ + N
Sbjct: 20 SAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQHVNNWMKHNVADSQITT 79
Query: 115 IQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPS 155
I L P +Y+ +V+A+ ++G G SS + V T PS
Sbjct: 80 IGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVIT-QTGSGPS 119
Score = 63.2 bits (154), Expect = 3e-12
Identities = 26/126 (20%), Positives = 48/126 (38%), Gaps = 10/126 (7%)
Query: 323 GSGPATDWFSAETFSQDLGEFTVPDI-PASLKARPGGPSSIIVSWTPPADQSIMVRGFTL 381
GS ++ +T Q P P ++AR ++I+V W P + + ++G+ +
Sbjct: 1 GSSGSSGPVLTQTSEQ------APSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRV 54
Query: 382 G-WGKGVPDEFVKQILDV-KQRSDEITGLEPNSDYVISLRAFNEMGDGPQ-KYESLRTRN 438
+V + I L P Y + + AF +GDGP + T+
Sbjct: 55 YYTMDPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQT 114
Query: 439 EPPPQA 444
P +
Sbjct: 115 GSGPSS 120
Score = 50.1 bits (120), Expect = 1e-07
Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 12/131 (9%)
Query: 425 GDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEG 484
G L +E P + P +++ +LS ++ + W P++ +G+
Sbjct: 1 GSSGSSGPVLTQTSEQAPSSA-----PRDVQARMLSSTTILVQW---KEPEE--PNGQI- 49
Query: 485 RHYLVRYTHLLGASNPRYKYINA-NITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVL 543
+ Y V YT + N + I +L P Y V + + S +
Sbjct: 50 QGYRVYYTMDPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQ 109
Query: 544 NTTQEAAPASA 554
TQ + S+
Sbjct: 110 VITQTGSGPSS 120
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 102 bits (256), Expect = 4e-26
Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Query: 545 TTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEES 604
++ + P APR+L + ++ +W PP +G I Y + YS + W +
Sbjct: 2 SSGSSGP-DAPRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEYSRSG-SKMWASQR 59
Query: 605 VVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASDMQEAGG 655
+ T ++ L +Y ++ A S G +S + + TT + G
Sbjct: 60 AASN--FTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKGSGPSSG 108
Score = 81.7 bits (202), Expect = 7e-19
Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Query: 153 VPSPPLNVNI--PVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTPQLSYE 210
P P N+ + P ++ W P T+G I+ Y + Y + + E
Sbjct: 7 GPDAPRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEYSRSGSKMWASQRAASNFTE 66
Query: 211 LTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPA 253
+ L TLY++ V A G G S S+ T+ K S P +
Sbjct: 67 IKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTI--KGSGPSS 107
Score = 79.4 bits (196), Expect = 4e-18
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 7/103 (6%)
Query: 57 PSAPQSVSAIMV--GPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAI 114
P AP+++ + + W PP G I Y V Y R GS+ + A +
Sbjct: 8 PDAPRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEYSRSGSKMWASQRAASN-FTE 66
Query: 115 IQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPP 157
I+ L NT YT RV A + G G S + + T S P
Sbjct: 67 IKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIK----GSGP 105
Score = 66.7 bits (163), Expect = 1e-13
Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 16/103 (15%)
Query: 243 TLSDKPSEPP----------ANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETV 292
+ S P P I W PP +G+I Y + Y + K
Sbjct: 3 SGSSGPDAPRNLQLSLPREAEGVIVGHWAPPIH--THGLIREYIVEYSRSGSK----MWA 56
Query: 293 TTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAET 335
+ I L +T Y +++ A+ G G +D S T
Sbjct: 57 SQRAASNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITT 99
Score = 57.8 bits (140), Expect = 2e-10
Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 5/102 (4%)
Query: 344 TVPDIPASLKARP--GGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQR 401
+ PD P +L+ I+ W PP ++R + + + + + Q
Sbjct: 6 SGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEYSRSGSKMWASQR--AASN 63
Query: 402 SDEITGLEPNSDYVISLRAFNEMGDGPQ-KYESLRTRNEPPP 442
EI L N+ Y + + A G G +S+ T P
Sbjct: 64 FTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKGSGP 105
Score = 45.5 bits (108), Expect = 4e-06
Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 13/119 (10%)
Query: 436 TRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLL 495
+ P AP+ L L + + W P HG R Y+V Y+
Sbjct: 2 SSGSSGPDAPRNLQ----LSLPREAEGVIVGHW---APPIH--THGLI-REYIVEYSR-- 49
Query: 496 GASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASA 554
+ + + A +I +L +T Y V V ++ WS TT + + S+
Sbjct: 50 -SGSKMWASQRAASNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKGSGPSS 107
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine
6 R beta subunit, signaling protein; 2.00A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 105 bits (264), Expect = 4e-26
Identities = 42/208 (20%), Positives = 74/208 (35%), Gaps = 15/208 (7%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERER--AYNATARVEAI 114
P P+++S I+ + + W + + + + A T +
Sbjct: 8 PEKPKNLSCIVNEGKKMRCEWDGGR-ETHLETNFTLKSEWATHKFADCKAKRDTPTSCTV 66
Query: 115 IQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTS--SLLV 172
+ V A NALG +S P+PP N+++ L +
Sbjct: 67 DYSTVYFVNIEVWVEAENALGKV--TSDHINFDPVYKVKPNPPHNLSVINSEELSSILKL 124
Query: 173 TWEKPTVTNGEIKHYTLYYLEEDTS-----VERHVVTPQLSYELTGLSHFTLYSIWVVAH 227
TW P++ + I Y + Y +D S + + S+ + L FT Y +
Sbjct: 125 TWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCM 184
Query: 228 NGNGAGT---TSQELSVQTLSDKPSEPP 252
+G G S+E S T D+PS+ P
Sbjct: 185 KEDGKGYWSDWSEEASGITYEDRPSKEP 212
Score = 90.4 bits (224), Expect = 1e-20
Identities = 44/212 (20%), Positives = 71/212 (33%), Gaps = 25/212 (11%)
Query: 154 PSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTPQLSYELT- 212
P P N++ V + W+ T+ E ++TL T
Sbjct: 8 PEKPKNLSCIVNEGKKMRCEWDGGRETHLET-NFTLKSEWATHKFADCKAKRDTPTSCTV 66
Query: 213 --GLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPAN-----------SITVR 259
+F +WV A N G T S ++ + PP N + +
Sbjct: 67 DYSTVYFVNIEVWVEAENALGKVT-SDHINFDPVYKVKPNPPHNLSVINSEELSSILKLT 125
Query: 260 WQPPSRRGQNGIITGYKLRYKKKDVKKDKG-ETVTTAGDRRLYVITGLNKSTTYQIKLWA 318
W PS ++ II Y ++Y+ KD TA R + + L T Y ++
Sbjct: 126 WTNPSI--KSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRC 183
Query: 319 MNVNGSGPATDWFSAETFSQDLGEFTVPDIPA 350
M +G G +DW + T D P+
Sbjct: 184 MKEDGKGYWSDWSEEASGI------TYEDRPS 209
Score = 82.7 bits (204), Expect = 4e-18
Identities = 42/217 (19%), Positives = 70/217 (32%), Gaps = 25/217 (11%)
Query: 441 PPQAPKVLIPPMGLKSEVLSPYSMRISW---IDTTLPDQFQQHGEEGRHYLVRYTHLLGA 497
PP+ PK L V MR W +T L ++ ++
Sbjct: 7 PPEKPK------NLSCIVNEGKKMRCEWDGGRETHLE----------TNFTLKSEWATHK 50
Query: 498 SNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRD 557
+ + E V+ A + I + + P P +
Sbjct: 51 FADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPN-PPHN 109
Query: 558 LTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTD--QWIEESVVGDKMSTNVR 615
L+V++ E S++ L W P + I Y I Y + + Q E + S V+
Sbjct: 110 LSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQ 169
Query: 616 GLEPGRIYYFKIKARNSAGS---SPYSSTVTWTTASD 649
L+P Y F+I+ G S +S + T D
Sbjct: 170 DLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYED 206
Score = 73.5 bits (180), Expect = 6e-15
Identities = 32/218 (14%), Positives = 66/218 (30%), Gaps = 21/218 (9%)
Query: 346 PDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSDEI 405
P+ P +L + W + + K D
Sbjct: 8 PEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVD 67
Query: 406 TGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMR 465
+ + + A N +G + + + P P L + + ++
Sbjct: 68 YSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNL----SVINSEELSSILK 123
Query: 466 ISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANI--TSVQINDLRPSTQY 523
++W + ++ Y ++Y ++ + + +S + DL+P T+Y
Sbjct: 124 LTWTNPSIKSVIIL------KYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEY 177
Query: 524 EFTVKVVRAKKE------SEWSMIVLNTTQEAAPASAP 555
F +R KE S+WS T E P+ P
Sbjct: 178 VFR---IRCMKEDGKGYWSDWSEEASGITYEDRPSKEP 212
Score = 67.3 bits (164), Expect = 7e-13
Identities = 34/218 (15%), Positives = 71/218 (32%), Gaps = 28/218 (12%)
Query: 248 PSEPPAN---------SITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDR 298
P E P N + W + + T + L+ + K +
Sbjct: 7 PPEKPKNLSCIVNEGKKMRCEWDGGR---ETHLETNFTLKSEWATHKFADCKAKRD-TPT 62
Query: 299 RLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARP-- 356
V ++ + A N G +++ + D P+ P +L
Sbjct: 63 SCTVDYSTVYFVNIEVWVEAENALGKV------TSDHINFDPVYKVKPNPPHNLSVINSE 116
Query: 357 GGPSSIIVSWTPPADQSIMVRGFTL---GWGKGVPDEFVKQILDVKQRSDEITGLEPNSD 413
S + ++WT P+ +S+++ + + + + + S + L+P ++
Sbjct: 117 ELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTE 176
Query: 414 YVISLRAFNEMGDG----PQKYESLRTRNEPPPQAPKV 447
YV +R E G G + S T + P + P
Sbjct: 177 YVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKEPSF 214
Score = 61.5 bits (149), Expect = 8e-11
Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 9/150 (6%)
Query: 18 PSSSTPPNQYHLTSTTSMTASPLDTSTGSIEAINETLTLPSAPQSVSAIMVGPRSVALRW 77
S+ + + + + + + + P SV + L W
Sbjct: 67 DYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTW 126
Query: 78 LPPTLPRGEILVYCVLYKREGSERERAYN----ATARVEAIIQGLHPNTSYTFRVVAYNA 133
P++ IL Y + Y+ + + A+ R +Q L P T Y FR+
Sbjct: 127 TNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKE 186
Query: 134 LGAGL---ASSALPVKTEPEDHVPSPPLNV 160
G G S T + PS +
Sbjct: 187 DGKGYWSDWSEEASGITYED--RPSKEPSF 214
Score = 43.8 bits (103), Expect = 7e-05
Identities = 9/115 (7%), Positives = 26/115 (22%), Gaps = 3/115 (2%)
Query: 551 PASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKM 610
P P++L+ + + + W + + + +T+ + +
Sbjct: 7 PPEKPKNLSCIVN--EGKKMRCEWDGGRETHL-ETNFTLKSEWATHKFADCKAKRDTPTS 63
Query: 611 STNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASDMQEAGGIPNSNQVSNT 665
T ++A N+ G +
Sbjct: 64 CTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEEL 118
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 119
Score = 102 bits (255), Expect = 6e-26
Identities = 45/104 (43%), Positives = 57/104 (54%), Gaps = 3/104 (2%)
Query: 55 TLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNAT--ARVE 112
LPSAP+ V ++V R V L W PP +G I + V + REG RERA N T ++
Sbjct: 16 VLPSAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSREGDNRERALNTTQPGSLQ 75
Query: 113 AIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSP 156
+ L P YTFRVVAYN G G +S + V T+PE PS
Sbjct: 76 LTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQPES-GPSS 118
Score = 90.9 bits (226), Expect = 5e-22
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 7/122 (5%)
Query: 135 GAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEE 194
G+ +S + + +PS P +V +V + + ++W P G I+ +T+++ E
Sbjct: 1 GSSGSSGKPAIPSSSV--LPSAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSRE 58
Query: 195 DTSVERHVVT---PQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEP 251
+ ER + T L + L +Y+ VVA+N G G +SQ + V T + P
Sbjct: 59 GDNRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQPESG--P 116
Query: 252 PA 253
+
Sbjct: 117 SS 118
Score = 86.7 bits (215), Expect = 2e-20
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 3/115 (2%)
Query: 535 ESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSD 594
S S + P SAPRD+ V V L+W+PP A G I +T+ +S +
Sbjct: 2 SSGSSGKPAIPSSSVLP-SAPRDVVPVLV--SSRFVRLSWRPPAEAKGNIQTFTVFFSRE 58
Query: 595 PNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649
+ + + + V L+P +Y F++ A N G S + T +
Sbjct: 59 GDNRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQPE 113
Score = 70.9 bits (174), Expect = 6e-15
Identities = 20/113 (17%), Positives = 45/113 (39%), Gaps = 11/113 (9%)
Query: 231 GAGTTSQELSVQTLSDKPSEPP--------ANSITVRWQPPSRRGQNGIITGYKLRYKKK 282
G+ +S + ++ + S PS P + + + W+PP+ G I + + + ++
Sbjct: 1 GSSGSSGKPAIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPAEA--KGNIQTFTVFFSRE 58
Query: 283 DVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAET 335
+++ T G + + L Y ++ A N G G ++ T
Sbjct: 59 GDNRERALNTTQPGSLQ-LTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVAT 110
Score = 63.2 bits (154), Expect = 2e-12
Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 8/124 (6%)
Query: 323 GSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLG 382
GS ++ + + +P P + + +SW PPA+ ++ FT+
Sbjct: 1 GSSGSSGKPAIPS------SSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVF 54
Query: 383 -WGKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQ-KYESLRTRNEP 440
+G E + L+P + Y + A+NE G G + + T+ E
Sbjct: 55 FSREGDNRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQPES 114
Query: 441 PPQA 444
P +
Sbjct: 115 GPSS 118
Score = 54.3 bits (131), Expect = 3e-09
Identities = 18/130 (13%), Positives = 37/130 (28%), Gaps = 12/130 (9%)
Query: 425 GDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEG 484
G + + P P + ++S +R+SW +
Sbjct: 1 GSSGSSGKPAIPSSSVLPS------APRDVVPVLVSSRFVRLSW------RPPAEAKGNI 48
Query: 485 RHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLN 544
+ + V ++ + + +L+P Y F V E S +
Sbjct: 49 QTFTVFFSREGDNRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKV 108
Query: 545 TTQEAAPASA 554
TQ + S+
Sbjct: 109 ATQPESGPSS 118
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 102 bits (256), Expect = 6e-26
Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 7/130 (5%)
Query: 128 VVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHY 187
+ +G G S ++ +D VP PP+ + P V T+S+ + W+ P NG I Y
Sbjct: 3 SGSSGRIGDGSPSHPPILERTLDD-VPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAY 61
Query: 188 TLYYLEEDTSVE----RHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQT 243
+ + T+ + Y TGL ++Y + A G G ++ L V T
Sbjct: 62 QITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTT 121
Query: 244 LSDKPSEPPA 253
+K S P +
Sbjct: 122 --EKRSGPSS 129
Score = 95.9 bits (239), Expect = 1e-23
Identities = 31/137 (22%), Positives = 49/137 (35%), Gaps = 19/137 (13%)
Query: 224 VVAHNGNGAGT-TSQELSVQTLSDKPSEPP--------ANSITVRWQPPSRRGQNGIITG 274
+ G G+ + + +TL D P P S+ + WQPP+ NGII
Sbjct: 3 SGSSGRIGDGSPSHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAA--PNGIILA 60
Query: 275 YKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAE 334
Y++ ++ + A R Y TGL + Y ++ A G G A +
Sbjct: 61 YQITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVT 120
Query: 335 TFSQDLGEFTVPDIPAS 351
T P+S
Sbjct: 121 T--------EKRSGPSS 129
Score = 93.6 bits (233), Expect = 8e-23
Identities = 28/115 (24%), Positives = 42/115 (36%), Gaps = 4/115 (3%)
Query: 536 SEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDP 595
S +L T + P P + + V L WQPP + NG I Y I + +
Sbjct: 13 SPSHPPILERTLDDVP-GPPMGILFPEV--RTTSVRLIWQPPAAPNGIILAYQITHRLNT 69
Query: 596 NTDQW-IEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649
T E + GL+P +Y F+I A+ G + + TT
Sbjct: 70 TTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEKR 124
Score = 87.8 bits (218), Expect = 1e-20
Identities = 32/102 (31%), Positives = 41/102 (40%), Gaps = 4/102 (3%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARV---EA 113
P P + V SV L W PP P G IL Y + ++ + A +
Sbjct: 28 PGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVLAPSARQY 87
Query: 114 IIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPS 155
GL P + Y FR+ A G G A+ AL V TE PS
Sbjct: 88 TATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEKRS-GPS 128
Score = 69.4 bits (170), Expect = 3e-14
Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 10/131 (7%)
Query: 318 AMNVNGSG-PATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMV 376
+ G G P+ T VP P + +S+ + W PPA + ++
Sbjct: 5 SSGRIGDGSPSHPPILERT------LDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGII 58
Query: 377 RGFTLGW--GKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQ-KYES 433
+ + + ++L R TGL+P S Y+ + A G G +
Sbjct: 59 LAYQITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALV 118
Query: 434 LRTRNEPPPQA 444
+ T P +
Sbjct: 119 VTTEKRSGPSS 129
Score = 61.6 bits (150), Expect = 1e-11
Identities = 27/141 (19%), Positives = 52/141 (36%), Gaps = 15/141 (10%)
Query: 417 SLRAFNEMGDGPQKYESLRTR-NEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPD 475
S + +GDG + + R + P PPMG+ + S+R+ W P
Sbjct: 2 SSGSSGRIGDGSPSHPPILERTLDDVPG------PPMGILFPEVRTTSVRLIW---QPPA 52
Query: 476 QFQQHGEEGRHYLVRYTHLLGASN-PRYKYINANITSVQINDLRPSTQYEFTVKVVRAKK 534
+G Y + + +N + + + L+P + Y F + K
Sbjct: 53 A--PNGII-LAYQITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKG 109
Query: 535 ESEWSMIVLNTT-QEAAPASA 554
E + ++ TT + + P+S
Sbjct: 110 WGEAAEALVVTTEKRSGPSSG 130
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 104 bits (261), Expect = 8e-26
Identities = 41/198 (20%), Positives = 71/198 (35%), Gaps = 18/198 (9%)
Query: 249 SEPPANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNK 308
+ NS ++W P Q I+ Y LR++ K+ + + T G Y I GL
Sbjct: 11 TPSQPNSHPIQWNAP----QPSHISKYILRWRPKN-SVGRWKEATIPGHLNSYTIKGLKP 65
Query: 309 STTYQIKLWAMNVNGSGPATDWFSAETF---------SQDLGEFTVPDIPASLKARPGGP 359
Y+ +L ++ G T + T P + S
Sbjct: 66 GVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITA 125
Query: 360 SSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQI-LDVKQRSDEITGLEPNSDYVISL 418
SS +VSW +D V GF + + + + + L S I L P Y++++
Sbjct: 126 SSFVVSWVSASDT---VSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLPGRKYIVNV 182
Query: 419 RAFNEMGDGPQKYESLRT 436
+E G+ + +T
Sbjct: 183 YQISEDGEQSLILSTSQT 200
Score = 99.7 bits (248), Expect = 4e-24
Identities = 36/211 (17%), Positives = 66/211 (31%), Gaps = 27/211 (12%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANI 509
+ + P S I W P Y++R+ + I ++
Sbjct: 4 VEVFITETPSQPNSHPIQW---NAPQ-----PSHISKYILRWRPKNSVGRWKEATIPGHL 55
Query: 510 TSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASA--------------P 555
S I L+P YE + ++ E + TT + P ++
Sbjct: 56 NSYTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVA 115
Query: 556 RDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVR 615
+V E S ++W + +SG+ + Y D+ + S N+
Sbjct: 116 TSESVT--EITASSFVVSWVSA---SDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIP 170
Query: 616 GLEPGRIYYFKIKARNSAGSSPYSSTVTWTT 646
L PGR Y + + G + + TT
Sbjct: 171 DLLPGRKYIVNVYQISEDGEQSLILSTSQTT 201
Score = 97.8 bits (243), Expect = 2e-23
Identities = 30/206 (14%), Positives = 61/206 (29%), Gaps = 25/206 (12%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYK---REGSERERAYNATARVEA 113
++ P S ++W P I Y + ++ G +E
Sbjct: 2 GPVEVFITETPSQPNSHPIQWNAP--QPSHISKYILRWRPKNSVGRWKEATIPGHLN-SY 58
Query: 114 IIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHV-------------PSPPLNV 160
I+GL P Y ++++ G + T V P +
Sbjct: 59 TIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSE 118
Query: 161 NIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVT---PQLSYELTGLSHF 217
++ + SS +V+W + + + + Y + E + S + L
Sbjct: 119 SVTEITASSFVVSWVSA---SDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLPG 175
Query: 218 TLYSIWVVAHNGNGAGTTSQELSVQT 243
Y + V + +G + S T
Sbjct: 176 RKYIVNVYQISEDGEQSLILSTSQTT 201
Score = 96.7 bits (240), Expect = 5e-23
Identities = 32/209 (15%), Positives = 65/209 (31%), Gaps = 36/209 (17%)
Query: 155 SPPLNVNIPVVGTS--SLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVT---PQLSY 209
S P+ V I + S + W P I Y L + +++ T SY
Sbjct: 1 SGPVEVFITETPSQPNSHPIQWNAPQ--PSHISKYILRWRPKNSVGRWKEATIPGHLNSY 58
Query: 210 ELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPA---------------- 253
+ GL +Y +++ G ++ T + P
Sbjct: 59 TIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSE 118
Query: 254 -------NSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGL 306
+S V W S ++G+++ Y+ + + D+ + + I L
Sbjct: 119 SVTEITASSFVVSWVSAS-----DTVSGFRVEYELSE-EGDEPQYLDLPSTATSVNIPDL 172
Query: 307 NKSTTYQIKLWAMNVNGSGPATDWFSAET 335
Y + ++ ++ +G S T
Sbjct: 173 LPGRKYIVNVYQISEDGEQSLILSTSQTT 201
Score = 89.0 bits (220), Expect = 2e-20
Identities = 38/208 (18%), Positives = 62/208 (29%), Gaps = 21/208 (10%)
Query: 349 PASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQI-LDVKQRSDEITG 407
+ P P+S + W P I + L W K+ + S I G
Sbjct: 5 EVFITETPSQPNSHPIQWNAPQPSHI--SKYILRWRPKNSVGRWKEATIPGHLNSYTIKG 62
Query: 408 LEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVL---------IPPMGLKSEV 458
L+P Y L + + G T + P + +
Sbjct: 63 LKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTE 122
Query: 459 LSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANITSVQINDLR 518
++ S +SW+ + + V Y P+Y + + TSV I DL
Sbjct: 123 ITASSFVVSWVSASDT---------VSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLL 173
Query: 519 PSTQYEFTVKVVRAKKESEWSMIVLNTT 546
P +Y V + E + TT
Sbjct: 174 PGRKYIVNVYQISEDGEQSLILSTSQTT 201
Score = 66.6 bits (162), Expect = 1e-12
Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Query: 553 SAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMST 612
S P ++ + P+ + W P IS Y + + + +W E ++ G S
Sbjct: 1 SGPVEVFITETPSQPNSHPIQWNAP--QPSHISKYILRWRPKNSVGRWKEATIPGHLNSY 58
Query: 613 NVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTAS 648
++GL+PG +Y ++ + G + TT++
Sbjct: 59 TIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTST 94
Score = 55.8 bits (134), Expect = 5e-09
Identities = 21/118 (17%), Positives = 31/118 (26%), Gaps = 1/118 (0%)
Query: 30 TSTTSMTASPLDTSTGSIEAINETLTLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILV 89
T T S T + T P S S + S + W+ + V
Sbjct: 85 TRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSWVSASDTVSGFRV 144
Query: 90 YCVLYKREGSERERAYNATARVEAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKT 147
L + + +TA I L P Y V + G + T
Sbjct: 145 EYELSEEGDEPQYLDLPSTAT-SVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 201
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy,
decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo
sapiens} PDB: 3lb6_D*
Length = 380
Score = 109 bits (272), Expect = 8e-26
Identities = 44/330 (13%), Positives = 89/330 (26%), Gaps = 36/330 (10%)
Query: 28 HLTSTTSMTASPLDTSTGSIEAINETLTLPSAPQSVSAIMVGPRS-VALRWLPPTLP--- 83
L T T + + E P PQ + G + L+W PP
Sbjct: 5 CLAVGCLYTFLISTTFGCTSSSDTEIKVNP--PQDFEIVDPGYLGYLYLQWQPPLSLDHF 62
Query: 84 RGEILVYCVLYKREGSERERAYNATARVEAIIQGLHPNTSYTFRVVAYNALGAGLASSAL 143
+ + Y + Y+ GSE + L+ + G +
Sbjct: 63 KECTVEYELKYRNIGSETWKTIITKNLHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSS 122
Query: 144 PVK----TEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVE 199
+ P+ + +++ LL +W+ + + Y+ E
Sbjct: 123 WAETTYWISPQGIPETXVQDMDCVYYNWQYLLCSWKPGIGVLLDTNYNLFYWYEGLDHAL 182
Query: 200 -------RHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPP 252
+ S + + I V + N S + Q + PP
Sbjct: 183 QCVDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENK-PIRSSYFTFQLQNIVKPLPP 241
Query: 253 AN---------SITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVI 303
I ++W P Y++ ++ D VT + Y +
Sbjct: 242 VYLTFTRESSCEIKLKWSIPLGPIPARCFD-YEIEIREDD-----TTLVTATVENETYTL 295
Query: 304 TGLNKSTTYQIKL---WAMNVNGSGPATDW 330
N++ + + + G ++W
Sbjct: 296 KTTNETRQLCFVVRSKVNIYCSDDGIWSEW 325
Score = 96.4 bits (239), Expect = 1e-21
Identities = 49/348 (14%), Positives = 92/348 (26%), Gaps = 57/348 (16%)
Query: 218 TLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPAN----------SITVRWQPP-SRR 266
LY+ + G + + ++ PP + + ++WQPP S
Sbjct: 10 CLYTFLISTTFGCTSSSDTEI---------KVNPPQDFEIVDPGYLGYLYLQWQPPLSLD 60
Query: 267 GQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMN--VNGS 324
Y+L+Y+ + + LNK I NGS
Sbjct: 61 HFKECTVEYELKYRNIG---SETWKTIITKNLHYKDGFDLNKGIEAXIHTLLPWQCTNGS 117
Query: 325 GPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWG 384
+ W + G + ++ SW P + W
Sbjct: 118 EVQSSWAETTYWISPQGIP--ETXVQDMDCVYYNWQYLLCSWKPGIGVLLDTNYNLFYWY 175
Query: 385 KGVPDEFVKQILDVKQRSDE-------ITGLEPNSDYVISLRAFNEMGDGPQKYESLRTR 437
+G + Q +D + + D+ I + +E Y + + +
Sbjct: 176 EG--LDHALQCVDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIRSSYFTFQLQ 233
Query: 438 NEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGA 497
N P PP+ L S +++ W P + Y +
Sbjct: 234 NIVKPL------PPVYLTFTRESSCEIKLKWSIPLGPIPARCFD-----YEIEIR----E 278
Query: 498 SNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKE------SEWS 539
+ + + + Q F V+ SEWS
Sbjct: 279 DDTTLVTATVENETYTLKTTNETRQLCFVVRSKVNIYCSDDGIWSEWS 326
Score = 90.6 bits (224), Expect = 1e-19
Identities = 47/361 (13%), Positives = 93/361 (25%), Gaps = 44/361 (12%)
Query: 126 FRVVAYNALGAGLASSALPVKTEPEDHV-PSPPLNVNIPVVG-TSSLLVTWEKPTVT--- 180
F +A L L S+ + + + +PP + I G L + W+ P
Sbjct: 3 FVCLAVGCLYTFLISTTFGCTSSSDTEIKVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHF 62
Query: 181 NGEIKHYTLYYLEEDTSVERHVVTPQLSYE-LTGLSHFTLYSIWVVAHN--GNGAGTTSQ 237
Y L Y + + ++T L Y+ L+ I + NG+ S
Sbjct: 63 KECTVEYELKYRNIGSETWKTIITKNLHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSS 122
Query: 238 ELSVQTLSDKPSEPPA------------NSITVRWQPPSRRGQNGIITGYKLRYKKK--D 283
P + W+P + T Y L Y + D
Sbjct: 123 WAETTYWISPQGIPETXVQDMDCVYYNWQYLLCSWKPGI---GVLLDTNYNLFYWYEGLD 179
Query: 284 VKKDKGETVTTAGDRRLYVI--TGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLG 341
+ + G + + I + + N ++ F+ L
Sbjct: 180 HALQCVDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIRSSY------FTFQLQ 233
Query: 342 EFTVPDIPASLKARPGGPSSIIVSWTPP-ADQSIMVRGFTLGWGKGVPDEFVKQILDVKQ 400
P P L I + W+ P + + + D+ V+
Sbjct: 234 NIVKPLPPVYLTFTRESSCEIKLKWSIPLGPIPARCFDYEI---EIREDDTTLVTATVEN 290
Query: 401 RSDEITGLEPNSDYVISLRAFNEMGDGPQKYES-------LRTRNEPPPQAPKVLIPPMG 453
+ + +R+ + S + + +P
Sbjct: 291 ETYTLKTTNETRQLCFVVRSKVNIYCSDDGIWSEWSDKQCWEGEDLSKKTLLRFWLPFGF 350
Query: 454 L 454
+
Sbjct: 351 I 351
Score = 74.5 bits (182), Expect = 3e-14
Identities = 39/305 (12%), Positives = 76/305 (24%), Gaps = 28/305 (9%)
Query: 356 PGGPSSIIVSWTPPADQSIMVRGFTLGWG---KGVPDEFVKQILDVKQRSDEITGLEPNS 412
PG + + W PP + T+ + + + E K I+ + L
Sbjct: 43 PGYLGYLYLQWQPPLSLDHF-KECTVEYELKYRNIGSETWKTIITKNLHYKDGFDLNKGI 101
Query: 413 DYVISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISW---I 469
+ I + +G + S + + + SW I
Sbjct: 102 EAXIHTLLPWQCTNGSEVQSSWAETTYWISPQGIPETXVQDMDCVYYNWQYLLCSWKPGI 161
Query: 470 DTTLPDQFQQHG-EEGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVK 528
L + EG + ++ + A + + V
Sbjct: 162 GVLLDTNYNLFYWYEGLDHALQCVDYIKADGQNIGC------RFPYLEASDYKDFYICVN 215
Query: 529 VVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQIS-GY 587
K S P LT + + L W P Y
Sbjct: 216 GSSENKPIRSSYFTFQLQ-NIVKPLPPVYLTFTRES--SCEIKLKWSIPLGPIPARCFDY 272
Query: 588 TILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGS------SPYSST 641
I D T + +V + + ++ R F ++++ + S +S
Sbjct: 273 EIEIREDDTT--LVTATVENE--TYTLKTTNETRQLCFVVRSKVNIYCSDDGIWSEWSDK 328
Query: 642 VTWTT 646
W
Sbjct: 329 QCWEG 333
Score = 58.7 bits (141), Expect = 3e-09
Identities = 25/226 (11%), Positives = 60/226 (26%), Gaps = 23/226 (10%)
Query: 441 PPQAPKVLIPPMGLKSEVLSPYS-MRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASN 499
+ PP + + + W P E Y ++Y ++ +
Sbjct: 25 SSDTEIKVNPPQDFEIVDPGYLGYLYLQW---QPPLSLDHFKECTVEYELKYRNI---GS 78
Query: 500 PRYKYINA-NITSVQINDLRPSTQYEFTVKVVRA-----KKESEWSMIVLNTTQEAAPAS 553
+K I N+ DL + + + +S W+ + + P +
Sbjct: 79 ETWKTIITKNLHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTYWISPQGIPET 138
Query: 554 APRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTN 613
+D+ V + + +W+P + Y + Y + D ++ N
Sbjct: 139 XVQDMDCVYY--NWQYLLCSWKPGIGV-LLDTNYNLFYWYEGL-DHALQCVDYIKADGQN 194
Query: 614 VR------GLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASDMQEA 653
+ + +Y + + S
Sbjct: 195 IGCRFPYLEASDYKDFYICVNGSSENKPIRSSYFTFQLQNIVKPLP 240
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 99.0 bits (247), Expect = 7e-25
Identities = 45/115 (39%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 46 SIEAINETLTLPSAPQSVSAIMVGPRSVALRWLPPTL-PRGEILVYCVLYKREGSERERA 104
A T LPSAP+ V A +V R + L W P P G+ L Y V Y +EG RER
Sbjct: 7 GEHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERV 66
Query: 105 YNATARV--EAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPP 157
N + + IQ L P T Y FRV+A N G+G +S+ L V+T+PE
Sbjct: 67 ENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQPE--SGPSS 119
Score = 88.6 bits (220), Expect = 3e-21
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 6/121 (4%)
Query: 135 GAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTV-TNGEIKHYTLYYLE 193
G+ +S T +PS P +V +V T + +TW P +G+ Y+++Y +
Sbjct: 1 GSSGSSGEHAPATTGP--LPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTK 58
Query: 194 EDTSVERHVVT---PQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSE 250
E + ER T ++ + L T+Y V+A N +G+G +S L V+T +
Sbjct: 59 EGIARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQPESGPS 118
Query: 251 P 251
Sbjct: 119 S 119
Score = 85.9 bits (213), Expect = 3e-20
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Query: 535 ESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKS-ANGQISGYTILYSS 593
S S T P SAPRD+ + L W+ P S +G Y++ Y+
Sbjct: 2 SSGSSGEHAPATTGPLP-SAPRDVVASLV--STRFIKLTWRTPASDPHGDNLTYSVFYTK 58
Query: 594 DPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649
+ + +E + +M ++ L P +Y F++ A+N GS S+ + T +
Sbjct: 59 EGIARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQPE 114
Score = 77.5 bits (191), Expect = 3e-17
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 10/113 (8%)
Query: 231 GAGTTSQELSVQTLSDKPSEPP--------ANSITVRWQPPSRRGQNGIITGYKLRYKKK 282
G+ +S E + T PS P I + W+ P+ +G Y + Y K+
Sbjct: 1 GSSGSSGEHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDP-HGDNLTYSVFYTKE 59
Query: 283 DVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAET 335
+ +++ E + G+ + I L +T Y ++ A N +GSG ++ ET
Sbjct: 60 GIARERVENTSHPGEMQ-VTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVET 111
Score = 61.7 bits (150), Expect = 1e-11
Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 9/125 (7%)
Query: 323 GSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPA-DQSIMVRGFTL 381
GS ++ + T +P P + A I ++W PA D +++
Sbjct: 1 GSSGSSGEHAPATTG------PLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSV 54
Query: 382 G-WGKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDG-PQKYESLRTRNE 439
+G+ E V+ + I L P + Y+ + A N+ G G + T+ E
Sbjct: 55 FYTKEGIARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQPE 114
Query: 440 PPPQA 444
P +
Sbjct: 115 SGPSS 119
Score = 51.6 bits (124), Expect = 4e-08
Identities = 26/130 (20%), Positives = 41/130 (31%), Gaps = 11/130 (8%)
Query: 425 GDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEG 484
G E P P P + + ++S ++++W P +
Sbjct: 1 GSSGSSGEHAPATTGPLPS------APRDVVASLVSTRFIKLTW---RTPAS--DPHGDN 49
Query: 485 RHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLN 544
Y V YT A + V I +L P+T Y F V E S +
Sbjct: 50 LTYSVFYTKEGIARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRV 109
Query: 545 TTQEAAPASA 554
TQ + S+
Sbjct: 110 ETQPESGPSS 119
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 98.6 bits (246), Expect = 8e-25
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Query: 135 GAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEE 194
G+ +S + V T+ VP PLN +S+L++W P + I +Y L Y +
Sbjct: 1 GSSGSSGDIQVITQTG--VPGQPLNFKAEPESETSILLSWTPPR--SDTIANYELVYKDG 56
Query: 195 DTSVERHV-VTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPA 253
+ E+ + + P SY L GL +LY + A + G G ++ E+S +T+ P +
Sbjct: 57 EHGEEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQSSG--PSS 114
Score = 86.2 bits (214), Expect = 2e-20
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 15/113 (13%)
Query: 231 GAGTTSQELSVQTLSDKPSEPP--------ANSITVRWQPPSRRGQNGIITGYKLRYKKK 282
G+ +S ++ V T + P +P SI + W PP ++ I Y+L YK
Sbjct: 1 GSSGSSGDIQVITQTGVPGQPLNFKAEPESETSILLSWTPP----RSDTIANYELVYKDG 56
Query: 283 DVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAET 335
+ E T Y + GL ++ Y +L A + G G +T SA T
Sbjct: 57 E---HGEEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISART 106
Score = 83.9 bits (208), Expect = 1e-19
Identities = 24/115 (20%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 535 ESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSD 594
S S + TQ P P + + + + L+W PP + I+ Y ++Y
Sbjct: 2 SSGSSGDIQVITQTGVP-GQPLNFKAEPE--SETSILLSWTPP--RSDTIANYELVYKDG 56
Query: 595 PNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649
+ ++ + + S ++GL+P +YYF++ AR+ G ++ ++ T
Sbjct: 57 EHGEE--QRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQS 109
Score = 83.2 bits (206), Expect = 2e-19
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAIIQ 116
P P + A S+ L W PP I Y ++YK E+ +Q
Sbjct: 18 PGQPLNFKAEPESETSILLSWTPP--RSDTIANYELVYKDGEHGEEQRITIEPGTSYRLQ 75
Query: 117 GLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPS 155
GL PN+ Y FR+ A + G G +++ + +T PS
Sbjct: 76 GLKPNSLYYFRLAARSPQGLGASTAEISARTMQSS-GPS 113
Score = 67.7 bits (166), Expect = 7e-14
Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 10/123 (8%)
Query: 323 GSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLG 382
GS ++ T + VP P + KA P +SI++SWTPP +I + L
Sbjct: 1 GSSGSSGDIQVIT------QTGVPGQPLNFKAEPESETSILLSWTPPRSDTI--ANYELV 52
Query: 383 WGKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQ-KYESLRTRNEPP 441
+ G E + ++ S + GL+PNS Y L A + G G S RT
Sbjct: 53 YKDGEHGEEQRITIE-PGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQSSG 111
Query: 442 PQA 444
P +
Sbjct: 112 PSS 114
Score = 50.4 bits (121), Expect = 7e-08
Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 14/107 (13%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGR--HYLVRYTHLLGASNPRYKYINA 507
P+ K+E S S+ +SW +Y + Y G +
Sbjct: 20 QPLNFKAEPESETSILLSW----------TPPRSDTIANYELVYKD--GEHGEEQRITIE 67
Query: 508 NITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASA 554
TS ++ L+P++ Y F + + + + T +++ S+
Sbjct: 68 PGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQSSGPSS 114
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 98.6 bits (246), Expect = 1e-24
Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 13/114 (11%)
Query: 231 GAGTTSQELSVQTLSDKPSEPPAN---------SITVRWQPPSRRGQNGIITGYKLRYKK 281
G+ +S + + D PSE P I+V W+ I+ Y++RY
Sbjct: 1 GSSGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHV----LEKIVESYQIRYWA 56
Query: 282 KDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAET 335
K++ V + L T Y I++ A N G GP +D A T
Sbjct: 57 AHDKEEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFT 110
Score = 92.8 bits (231), Expect = 1e-22
Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Query: 535 ESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSD 594
S S + + + + AP+ AP ++ V S ++++W+ + Y I Y +
Sbjct: 2 SSGSSGVAVINSAQDAPSEAPTEVGVKVL--SSSEISVHWEHV--LEKIVESYQIRYWAA 57
Query: 595 PNT-DQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTT 646
+ + V + S + L P Y+ ++ A NSAG P S + T
Sbjct: 58 HDKEEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFT 110
Score = 84.3 bits (209), Expect = 1e-19
Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 11/124 (8%)
Query: 135 GAGLASSALPVKTEPEDHVPS-PPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYY-- 191
G+ +S + + +D PS P V + V+ +S + V WE ++ Y + Y
Sbjct: 1 GSSGSSGVAVINS-AQD-APSEAPTEVGVKVLSSSEISVHWEHVL--EKIVESYQIRYWA 56
Query: 192 --LEEDTSVERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPS 249
+E+ + V + + S L L T Y I V A N G G S + T
Sbjct: 57 AHDKEEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTKKASG- 115
Query: 250 EPPA 253
P +
Sbjct: 116 -PSS 118
Score = 80.1 bits (198), Expect = 3e-18
Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 6/102 (5%)
Query: 58 SAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATA---RVEAI 114
AP V ++ +++ W + Y + Y + E A A
Sbjct: 20 EAPTEVGVKVLSSSEISVHWEHV--LEKIVESYQIRYWAAHDKEEAANRVQVTSQEYSAR 77
Query: 115 IQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSP 156
++ L P+T Y V A N+ G G S + T + PS
Sbjct: 78 LENLLPDTQYFIEVGACNSAGCGPPSDMIEAFT-KKASGPSS 118
Score = 62.4 bits (152), Expect = 6e-12
Identities = 22/124 (17%), Positives = 40/124 (32%), Gaps = 12/124 (9%)
Query: 323 GSGPATDWFSAETFSQDLGEFTVPDI-PASLKARPGGPSSIIVSWTPPADQSIMVRGFTL 381
GS ++ + P P + + S I V W ++ + + +
Sbjct: 1 GSSGSSGVAVINSAQD------APSEAPTEVGVKVLSSSEISVHWEHVLEKIV--ESYQI 52
Query: 382 GWGKGVPDEFVKQILDVK--QRSDEITGLEPNSDYVISLRAFNEMGDGPQ-KYESLRTRN 438
+ E + V + S + L P++ Y I + A N G GP T+
Sbjct: 53 RYWAAHDKEEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTKK 112
Query: 439 EPPP 442
P
Sbjct: 113 ASGP 116
Score = 50.0 bits (120), Expect = 9e-08
Identities = 23/133 (17%), Positives = 44/133 (33%), Gaps = 18/133 (13%)
Query: 425 GDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEG 484
G ++ + P P + +VLS + + W +H E
Sbjct: 1 GSSGSSGVAVINSAQDAPSEA-----PTEVGVKVLSSSEISVHW----------EHVLEK 45
Query: 485 --RHYLVRYTHLLGASNP-RYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMI 541
Y +RY + + S ++ +L P TQY V + S +
Sbjct: 46 IVESYQIRYWAAHDKEEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDM 105
Query: 542 VLNTTQEAAPASA 554
+ T++A+ S+
Sbjct: 106 IEAFTKKASGPSS 118
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 116
Score = 98.3 bits (245), Expect = 1e-24
Identities = 50/123 (40%), Positives = 68/123 (55%), Gaps = 9/123 (7%)
Query: 323 GSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLG 382
GS ++ + E VPD P+SL RP + II+SWTPP + +I+VRG+ +G
Sbjct: 1 GSSGSSGPENDLD------ESQVPDQPSSLHVRPQ-TNCIIMSWTPPLNPNIVVRGYIIG 53
Query: 383 WGKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEP-P 441
+G G P +D KQR I LE +S YVISL+AFN G+G YES TR+
Sbjct: 54 YGVGSPYA-ETVRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPLYESATTRSITSG 112
Query: 442 PQA 444
P +
Sbjct: 113 PSS 115
Score = 82.1 bits (203), Expect = 6e-19
Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Query: 135 GAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEE 194
G+ +S E + VP P ++++ T+ ++++W P N ++ Y + Y
Sbjct: 1 GSSGSSGPENDLDESQ--VPDQPSSLHV-RPQTNCIIMSWTPPLNPNIVVRGYIIGYGVG 57
Query: 195 DTSVERHVVTP-QLSYELTGLSHFTLYSIWVVAHNGNGAGT-TSQELSVQTLSDKPSE 250
E V Q Y + L + Y I + A N G G + + ++++ PS
Sbjct: 58 SPYAETVRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPLYESATTRSITSGPSS 115
Score = 79.4 bits (196), Expect = 5e-18
Identities = 24/112 (21%), Positives = 38/112 (33%), Gaps = 6/112 (5%)
Query: 535 ESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSD 594
S S + + P P L V + + ++W PP + N + GY I Y
Sbjct: 2 SSGSSGPENDLDESQVP-DQPSSLHVRP---QTNCIIMSWTPPLNPNIVVRGYIIGYG-- 55
Query: 595 PNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTT 646
+ V + ++ LE Y +KA N+AG T
Sbjct: 56 VGSPYAETVRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPLYESATTR 107
Score = 76.7 bits (189), Expect = 4e-17
Identities = 29/105 (27%), Positives = 39/105 (37%), Gaps = 12/105 (11%)
Query: 231 GAGTTSQELSVQTLSDKPSEPP-------ANSITVRWQPPSRRGQNGIITGYKLRYKKKD 283
G+ +S + S P +P N I + W PP N ++ GY + Y
Sbjct: 1 GSSGSSGPENDLDESQVPDQPSSLHVRPQTNCIIMSWTPPLN--PNIVVRGYIIGYGVGS 58
Query: 284 VKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPAT 328
ETV +R Y I L S+ Y I L A N G G
Sbjct: 59 ---PYAETVRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPL 100
Score = 72.1 bits (177), Expect = 2e-15
Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 2/101 (1%)
Query: 55 TLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAI 114
+P P S+ + + W PP P + Y + Y E + +
Sbjct: 16 QVPDQPSSLHV-RPQTNCIIMSWTPPLNPNIVVRGYIIGYGVGSPYAETVRVDSKQRYYS 74
Query: 115 IQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPS 155
I+ L ++ Y + A+N G G+ T PS
Sbjct: 75 IERLESSSHYVISLKAFNNAGEGVPLYE-SATTRSITSGPS 114
Score = 45.5 bits (108), Expect = 4e-06
Identities = 19/131 (14%), Positives = 36/131 (27%), Gaps = 17/131 (12%)
Query: 425 GDGPQ-KYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEE 483
G E+ ++ P P L + + +SW
Sbjct: 1 GSSGSSGPENDLDESQVPD-------QPSSLHVRPQTN-CIIMSW------TPPLNPNIV 46
Query: 484 GRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVL 543
R Y++ Y G+ +++ I L S+ Y ++K E
Sbjct: 47 VRGYIIGYGV--GSPYAETVRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPLYESA 104
Query: 544 NTTQEAAPASA 554
T + S+
Sbjct: 105 TTRSITSGPSS 115
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 134
Score = 98.6 bits (246), Expect = 1e-24
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Query: 231 GAGTTSQELSVQTLSDKPSEPPAN---------SITVRWQPPSRRGQNGIITGYKLRYKK 281
G+ +S + +T PS PP ++ V W PP +NG+IT Y + Y+
Sbjct: 1 GSSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEA 60
Query: 282 KDVK-KDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAET 335
D + + + + + + + GL K T Y++ + A G GP + T
Sbjct: 61 VDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRT 115
Score = 97.8 bits (244), Expect = 3e-24
Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 10/128 (7%)
Query: 135 GAGLASSALPVKTEPEDHVPS-PPLNVNIPVVGTSSLLVTWEKPTVT--NGEIKHYTLYY 191
G+ +S + +T + PS PP V +G++++ V+W P NG I Y++ Y
Sbjct: 1 GSSGSSGTIEART-AQS-TPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAY 58
Query: 192 LEEDTS-----VERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSD 246
D V + S++L GL +T Y +WV AH G G S + V+T D
Sbjct: 59 EAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDED 118
Query: 247 KPSEPPAN 254
PS PP
Sbjct: 119 VPSGPPRK 126
Score = 88.6 bits (220), Expect = 6e-21
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Query: 535 ESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPP--KSANGQISGYTILY- 591
S S + T ++ P++ P+ + VS + V ++W PP S NG I+ Y++ Y
Sbjct: 2 SSGSSGTIEARTAQSTPSAPPQKVMCVS--MGSTTVRVSWVPPPADSRNGVITQYSVAYE 59
Query: 592 -SSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649
+ + + + + + S ++ GLE Y ++A G P SS V T D
Sbjct: 60 AVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDED 118
Score = 80.5 bits (199), Expect = 4e-18
Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 11/118 (9%)
Query: 58 SAPQSVSAIMVGPRSVALRWLPP--TLPRGEILVYCVLYKREGSERERAYN----ATARV 111
+ PQ V + +G +V + W+PP G I Y V Y+ E + +
Sbjct: 20 APPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHS 79
Query: 112 EAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPS-PPLNVNIPVVGTS 168
+ GL T Y V A+ +G G SS + V+T ED VPS PP V +S
Sbjct: 80 SWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRT-DED-VPSGPPRKVE--SGPSS 133
Score = 66.6 bits (163), Expect = 3e-13
Identities = 31/144 (21%), Positives = 57/144 (39%), Gaps = 17/144 (11%)
Query: 323 GSGPATDWFSAETFSQDLGEFTVPDI-PASLKARPGGPSSIIVSWTPPADQSI--MVRGF 379
GS ++ A T P P + G +++ VSW PP S ++ +
Sbjct: 1 GSSGSSGTIEARTAQS------TPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQY 54
Query: 380 TLG-WGKGVPDEFVKQILDV--KQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESLRT 436
++ D + + + S ++ GLE ++Y + +RA ++G GP+ L
Sbjct: 55 SVAYEAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVR 114
Query: 437 RNEPPPQAPKVLIPPMGLKSEVLS 460
+E P PP ++S S
Sbjct: 115 TDEDVPSG-----PPRKVESGPSS 133
Score = 65.5 bits (160), Expect = 6e-13
Identities = 26/115 (22%), Positives = 42/115 (36%), Gaps = 6/115 (5%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRY--KYINA 507
PP + + ++R+SW P ++G Y V Y + G R+ I+
Sbjct: 21 PPQKVMCVSMGSTTVRVSW---VPPPADSRNGV-ITQYSVAYEAVDGEDRGRHVVDGISR 76
Query: 508 NITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVS 562
+S + L T+Y V+ S VL T E P+ PR +
Sbjct: 77 EHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVESGP 131
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII
domain, dscaml1 protein, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 122
Score = 96.3 bits (240), Expect = 9e-24
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 235 TSQELSVQTLSDKPSEPPAN---------SITVRWQPPSRRGQNGIITGYKLRYKKKDVK 285
+S + T P PP + SI V W+ P + QNG+I GY++ Y++
Sbjct: 2 SSGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPG 61
Query: 286 KDKGET---VTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAET 335
+ + + GD +Y + L K Y + + A N G+GP++ +A T
Sbjct: 62 SNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATT 114
Score = 87.4 bits (217), Expect = 1e-20
Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 8/117 (6%)
Query: 539 SMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPP--KSANGQISGYTILY----S 592
S +T+EAAP P D+T+ + + W+ P + NG I GY I Y
Sbjct: 3 SGSSGISTEEAAPDGPPMDVTLQP--VTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSP 60
Query: 593 SDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649
+E GD + L+ Y ++A N AG+ P SS + TT
Sbjct: 61 GSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLES 117
Score = 85.5 bits (212), Expect = 4e-20
Identities = 37/120 (30%), Positives = 51/120 (42%), Gaps = 12/120 (10%)
Query: 140 SSALPVKTEPEDHVPS-PPLNVNIPVVGTSSLLVTWEKPTVT--NGEIKHYTLYYLEEDT 196
S + + T E P PP++V + V + S+ VTW+ P NG I+ Y + Y E
Sbjct: 3 SGSSGIST-EEA-APDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSP 60
Query: 197 S-------VERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPS 249
VE Y L L F Y + V A N G G +S E++ TL PS
Sbjct: 61 GSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESGPS 120
Score = 73.9 bits (182), Expect = 5e-16
Identities = 24/106 (22%), Positives = 35/106 (33%), Gaps = 10/106 (9%)
Query: 58 SAPQSVSAIMVGPRSVALRWLPPTLP--RGEILVYCVLYKREGSERERAYNATARV---- 111
P V+ V +S+ + W P G I Y + Y+ Y+
Sbjct: 17 GPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGD 76
Query: 112 --EAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPS 155
+ L Y V A+N G G +SS + T E PS
Sbjct: 77 SEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATT-LES-GPS 120
Score = 60.8 bits (148), Expect = 2e-11
Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 14/132 (10%)
Query: 427 GPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRH 486
G + T E P P PM + + ++ S++++W P + Q+G R
Sbjct: 1 GSSGSSGIST-EEAAPDGP-----PMDVTLQPVTSQSIQVTW---KAPKKELQNGV-IRG 50
Query: 487 YLVRYTHLLGASNPRYKYIN----ANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIV 542
Y + Y SN +Y + + +++L+ QY V+ S +
Sbjct: 51 YQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEI 110
Query: 543 LNTTQEAAPASA 554
TT E+ P+S
Sbjct: 111 NATTLESGPSSG 122
Score = 58.9 bits (143), Expect = 1e-10
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 349 PASLKARPGGPSSIIVSWTPPADQSI--MVRGFTLG-WGKGVPDEFVKQILDVKQRSDE- 404
P + +P SI V+W P + ++RG+ +G I+++K D
Sbjct: 19 PMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSE 78
Query: 405 ---ITGLEPNSDYVISLRAFNEMGDGP 428
+ L+ + Y + ++AFN G GP
Sbjct: 79 VYTLDNLKKFAQYGVVVQAFNRAGTGP 105
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 101 bits (252), Expect = 9e-24
Identities = 52/296 (17%), Positives = 93/296 (31%), Gaps = 28/296 (9%)
Query: 60 PQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREG----SERERAYNATARVEAII 115
P+S + + + + +++K E+ N TA
Sbjct: 11 PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFT 70
Query: 116 QGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWE 175
N T ++ + L + + P P N++ V + W+
Sbjct: 71 DIASLNIQLTCNILTFGQLEQNVYGITIIS-----GLPPEKPKNLSCIVNEGKKMRCEWD 125
Query: 176 KPTVTNGEIKHYTLYYL---EEDTSVERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGA 232
T+ E +TL + + TP +F +WV A N G
Sbjct: 126 GGRETHLETN-FTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGK 184
Query: 233 GTTSQELSVQTLSDKPSEPPAN-----------SITVRWQPPSRRGQNGIITGYKLRYKK 281
T S ++ + PP N + + W PS ++ II Y ++Y+
Sbjct: 185 VT-SDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSI--KSVIILKYNIQYRT 241
Query: 282 KDVKKDKG-ETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETF 336
KD TA R + + L T Y ++ M +G G +DW +
Sbjct: 242 KDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASG 297
Score = 86.4 bits (213), Expect = 1e-18
Identities = 52/313 (16%), Positives = 90/313 (28%), Gaps = 31/313 (9%)
Query: 348 IPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGW---GKGVPDEFVKQILDVKQRSDE 404
P S + + + V + W +P E I
Sbjct: 10 SPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTF 69
Query: 405 ITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSM 464
N ++ F ++ Q + + PP+ PK L V M
Sbjct: 70 TDIASLNIQLTCNILTFGQLE---QNVYGITIISGLPPEKPKNLS------CIVNEGKKM 120
Query: 465 RISWI---DTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPST 521
R W +T L + ++ + +
Sbjct: 121 RCEWDGGRETHLETN----------FTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFV 170
Query: 522 QYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSAN 581
E V+ A + I + + P P +L+V++ E S++ L W P +
Sbjct: 171 NIEVWVEAENALGKVTSDHINFDPVYKVKPN-PPHNLSVINSEELSSILKLTWTNPSIKS 229
Query: 582 GQISGYTILYSSDPNTD--QWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGS---S 636
I Y I Y + + Q E + S V+ L+P Y F+I+ G S
Sbjct: 230 VIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWS 289
Query: 637 PYSSTVTWTTASD 649
+S + T D
Sbjct: 290 DWSEEASGITYED 302
Score = 60.2 bits (145), Expect = 6e-10
Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 4/127 (3%)
Query: 18 PSSSTPPNQYHLTSTTSMTASPLDTSTGSIEAINETLTLPSAPQSVSAIMVGPRSVALRW 77
S+ + + + + + + + P SV + L W
Sbjct: 163 DYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTW 222
Query: 78 LPPTLPRGEILVYCVLYKREGSERERAYN----ATARVEAIIQGLHPNTSYTFRVVAYNA 133
P++ IL Y + Y+ + + A+ R +Q L P T Y FR+
Sbjct: 223 TNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKE 282
Query: 134 LGAGLAS 140
G G S
Sbjct: 283 DGKGYWS 289
Score = 45.6 bits (107), Expect = 3e-05
Identities = 17/165 (10%), Positives = 41/165 (24%), Gaps = 6/165 (3%)
Query: 501 RYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTV 560
+Y IN +SV D+ + + E I + P P++L+
Sbjct: 56 QYTIINRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITII---SGLPPEKPKNLSC 112
Query: 561 VSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPG 620
+ + + W + + + + +T+ + + T
Sbjct: 113 IVN--EGKKMRCEWDGGRETHLETN-FTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYF 169
Query: 621 RIYYFKIKARNSAGSSPYSSTVTWTTASDMQEAGGIPNSNQVSNT 665
++A N+ G +
Sbjct: 170 VNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEEL 214
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 104 bits (260), Expect = 1e-23
Identities = 58/517 (11%), Positives = 139/517 (26%), Gaps = 54/517 (10%)
Query: 151 DHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTPQLSYE 210
D+ ++ TW P + + + S + +
Sbjct: 1 DYKDDDDKDLKCTTNNMRVWDCTWPAPLGVSPGT-VKDICIKDRFHSCHP---LETTNVK 56
Query: 211 LTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKP------SEPPANSITVRWQPPS 264
+ LS + + + NG + T E V + + P ++ +S+ ++W
Sbjct: 57 IPALSPGD-HEVTINYLNGFQSKFTLNEKDVSLIPETPEILDLSADFFTSSLLLKWNDRG 115
Query: 265 RRGQNGIITGYKLRYKKKDVKKD-KGETVTTAGDRRLYVITGLNKS------TTYQIKLW 317
+ ++++ + + + T + V S T+ + +
Sbjct: 116 SALPHPSNATWEIKVLQNPRTEPVALVLLNTMLSGKDTVQHWNWTSDLPLQCATHSVSIR 175
Query: 318 AMNVNGSGPATDWFSAETFSQDLGEFTVPD---IPASLKARPGGPSSIIVSWTPPADQSI 374
+ +S + +++ + P G S++ + P
Sbjct: 176 WHIDSPHFSGYKEWSDWSPLKNISWIRNTETNVFPQDKVVLAG--SNMTICCMSP----- 228
Query: 375 MVRGFTLGWGKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESL 434
K + + + + + + + V N +
Sbjct: 229 ---------TKVLSGQIGNTLRPLIHLYGQTVAIHILNIPVSENSGTNIIFITDDDVYGT 279
Query: 435 RTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHL 494
PP P+ L E + SW + L
Sbjct: 280 VVFAGYPPDVPQ------KLSCETHDLKEIICSW--NPGRITGLVGPRNTEYTLFESISG 331
Query: 495 LGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASA 554
A R + + + + + FT+ +++ ++++ E
Sbjct: 332 KSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVI--NVTERVAPHD 389
Query: 555 PRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMST-- 612
P L V ++V +W P + I + + ++ G + ST
Sbjct: 390 PTSLKVKDIN--STVVTFSWYLPGNFTKINLLCQIEICKANSKKEVRNATIRGAEDSTYH 447
Query: 613 -NVRGLEPGRIYYFKIKARNSAGS--SPYSSTVTWTT 646
V L P Y F+++ + S +S T
Sbjct: 448 VAVDKLNPYTAYTFRVRCSSKTFWKWSRWSDEKRHLT 484
Score = 88.9 bits (219), Expect = 1e-18
Identities = 69/522 (13%), Positives = 131/522 (25%), Gaps = 67/522 (12%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAIIQ 116
+ + R W P + +R + + I
Sbjct: 4 DDDDKDLKCTTNNMRVWDCTWPAPLGVSP-----GTVKDICIKDRFHSCHPLETTNVKIP 58
Query: 117 GLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNI-PVVGTSSLLVTW- 174
L P + + N S + + +P P +++ TSSLL+ W
Sbjct: 59 ALSPGD-HEVTINYLNGFQ-----SKFTLNEKDVSLIPETPEILDLSADFFTSSLLLKWN 112
Query: 175 -EKPTVTNGEIKHYTLYYLEEDTS----VERHVVTPQLSYELTGLS-------HFTLYSI 222
+ + + + L+ + + + + +S+
Sbjct: 113 DRGSALPHPSNATWEIKVLQNPRTEPVALVLLNTMLSGKDTVQHWNWTSDLPLQCATHSV 172
Query: 223 WVVAHNGNGAGTTSQELSVQTLSDKPSEPPANSITVRWQPPS-RRGQNGIITGYKLRYKK 281
+ H + + +E S + S V Q G N I K
Sbjct: 173 SIRWHIDSPHFSGYKEWSDWSPLKNISWIRNTETNVFPQDKVVLAGSNMTIC-CMSPTKV 231
Query: 282 KDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLG 341
+ + I LN + + + + +
Sbjct: 232 LSGQIGNTLRPLIHLYGQTVAIHILNIPVSENSGTNIIFITDDD---------VYGTVVF 282
Query: 342 EFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGW------GKGVPDEFVKQI 395
PD+P L II SW P ++ T GK ++ +
Sbjct: 283 AGYPPDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEGL 342
Query: 396 LDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPPMGLK 455
+ + + + +L N +G T P P LK
Sbjct: 343 TN-ETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINVTERVAPH-------DPTSLK 394
Query: 456 SEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLG---ASNPRYKYINANITSV 512
+ ++ + SW + + N + + V
Sbjct: 395 VKDINSTVVTFSWYLPGNFTKINLL------CQIEICKANSKKEVRNATIRGAEDSTYHV 448
Query: 513 QINDLRPSTQYEFTVKVVRAKKE-----SEWSMIVLNTTQEA 549
++ L P T Y F V R + S WS + T EA
Sbjct: 449 AVDKLNPYTAYTFRV---RCSSKTFWKWSRWSDEKRHLTTEA 487
Score = 82.7 bits (203), Expect = 9e-17
Identities = 32/229 (13%), Positives = 59/229 (25%), Gaps = 19/229 (8%)
Query: 30 TSTTSMTASPLDTSTGSIEAINETLTLPSAPQSVSAIMVGPRSVALRWLPPT---LPRGE 86
S S T T + P PQ +S + + W P L
Sbjct: 260 VSENSGTNIIFITDDDVYGTVVFAGYPPDVPQKLSCETHDLKEIICSWNPGRITGLVGPR 319
Query: 87 ILVYCVLYKREGSERER---AYNATARVEAIIQGLHPNTSYTFRVVAYNALGAGLASSAL 143
Y + G +Q + F + N LG +
Sbjct: 320 NTEYTLFESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLG----QAQS 375
Query: 144 PVKTEPEDHVP-SPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHV 202
V + V P ++ + + ++ + +W P + + ++ E
Sbjct: 376 AVVINVTERVAPHDPTSLKVKDINSTVVTFSWYLPGNFTKINLLCQIEICKANSKKEVRN 435
Query: 203 VT------PQLSYELTGLSHFTLYSIWV-VAHNGNGA-GTTSQELSVQT 243
T + L+ +T Y+ V + S E T
Sbjct: 436 ATIRGAEDSTYHVAVDKLNPYTAYTFRVRCSSKTFWKWSRWSDEKRHLT 484
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 95.6 bits (238), Expect = 1e-23
Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 3/111 (2%)
Query: 545 TTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEES 604
++ + P A D+ V PS ++L W P++ +G + Y + Y
Sbjct: 2 SSGSSGP-PAVSDIRVTRS--SPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRF 58
Query: 605 VVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASDMQEAGG 655
+ + +RGL+ G Y +++AR+ AG P+ T D + G
Sbjct: 59 LKTSENRAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQLDSGPSSG 109
Score = 82.9 bits (205), Expect = 3e-19
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 3/100 (3%)
Query: 153 VPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLE---EDTSVERHVVTPQLSY 209
P ++ + SSL + W P +G + Y + Y E E S R + T +
Sbjct: 7 GPPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSENRA 66
Query: 210 ELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPS 249
EL GL Y + V A + G G QE QT D
Sbjct: 67 ELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQLDSGP 106
Score = 81.7 bits (202), Expect = 6e-19
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNA--TARVEAI 114
P A + P S++L W P P G +L Y V Y +G+E + T+ A
Sbjct: 8 PPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSENRAE 67
Query: 115 IQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPED 151
++GL SY +V A + G G +T+ +
Sbjct: 68 LRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQLDS 104
Score = 76.4 bits (188), Expect = 6e-17
Identities = 18/101 (17%), Positives = 40/101 (39%), Gaps = 11/101 (10%)
Query: 243 TLSDKPSEPP--------ANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTT 294
+ S P +S+++ W P +G + Y+++Y +K +
Sbjct: 3 SGSSGPPAVSDIRVTRSSPSSLSLAWAVPRA--PSGAVLDYEVKYHEKGAEGPSSVRFLK 60
Query: 295 AGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAET 335
+ R + GL + +Y +++ A + G GP ++T
Sbjct: 61 TSENR-AELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQT 100
Score = 66.3 bits (162), Expect = 1e-13
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 344 TVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLG-WGKGVPDEFVKQILDVKQRS 402
+ P + ++ PSS+ ++W P S V + + KG + L +
Sbjct: 6 SGPPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSENR 65
Query: 403 DEITGLEPNSDYVISLRAFNEMGDGPQ-KYESLRTRNEPPPQA 444
E+ GL+ + Y++ +RA +E G GP + +T+ + P +
Sbjct: 66 AELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQLDSGPSS 108
Score = 52.9 bits (127), Expect = 9e-09
Identities = 13/105 (12%), Positives = 32/105 (30%), Gaps = 7/105 (6%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANI 509
++ SP S+ ++W + Y V+Y +++ +
Sbjct: 10 AVSDIRVTRSSPSSLSLAW------AVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSE 63
Query: 510 TSVQINDLRPSTQYEFTVKVVRAKKESEWS-MIVLNTTQEAAPAS 553
++ L+ Y V+ + T ++ P+S
Sbjct: 64 NRAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQLDSGPSS 108
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R,
cytokine, glycoprotein, IM response, membrane,
phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens}
PDB: 3bpn_C*
Length = 314
Score = 101 bits (252), Expect = 1e-23
Identities = 37/298 (12%), Positives = 79/298 (26%), Gaps = 32/298 (10%)
Query: 60 PQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAIIQGLH 119
++S + +V W PP ++ Y +++ A +I L+
Sbjct: 7 VTNLSVSVENLCTVIWTWNPPEGASSNCSLW---YFSHFGDKQDKKIAPETRRSIEVPLN 63
Query: 120 PNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTV 179
+ + PE S + S + +W
Sbjct: 64 ERICLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPGRN 123
Query: 180 TNGEIKHYTLYYLE--------EDTSVERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNG 231
T+ + + Y+ E+ E S F +S+ ++ + G
Sbjct: 124 TSPDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAG 183
Query: 232 AGTTSQELSVQTLSDKPSEPP-------ANSITVRWQPPSRRGQNGIITGYKLRYKKKD- 283
S + T KP P + + V+W+ P Y++
Sbjct: 184 KIKPSFNIVPLTSRVKPDPPHIKNLSFHNDDLYVQWENPQ--NFISRCLFYEVEVNNSQT 241
Query: 284 ----------VKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWA-MNVNGSGPATDW 330
K + E + +++ G+ T +++ N W
Sbjct: 242 ETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRVKTNKLCYEDDKLW 299
Score = 79.2 bits (194), Expect = 4e-16
Identities = 36/292 (12%), Positives = 79/292 (27%), Gaps = 38/292 (13%)
Query: 156 PPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTPQLSY-ELTGL 214
P N+++ V +++ TW P G + +L+Y + + P+ L
Sbjct: 6 PVTNLSVSVENLCTVIWTWNPP---EGASSNCSLWYFSHFGDKQDKKIAPETRRSIEVPL 62
Query: 215 SHFTLYSIWVVAHNGNGAGTTS-QELSVQTLSDKPSEPPAN---------SITVRWQPPS 264
+ + + E + P + W P
Sbjct: 63 NERICLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPGR 122
Query: 265 RRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRR---LYVITGLNKSTTYQIKLWAMNV 321
T Y L Y + ++K + + +T + S+ Q + M
Sbjct: 123 ---NTSPDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVK 179
Query: 322 NGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTL 381
+ +G L PD P + V W P + + +
Sbjct: 180 DNAGK----IKPSFNIVPLTSRVKPDPPHIKNLSFH-NDDLYVQWENPQNFISRCLFYEV 234
Query: 382 --------GWGKGVPDEFVKQILDVKQRSD-----EITGLEPNSDYVISLRA 420
E + + ++ + + G+ P++ + +R
Sbjct: 235 EVNNSQTETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRV 286
Score = 71.5 bits (174), Expect = 1e-13
Identities = 37/324 (11%), Positives = 91/324 (28%), Gaps = 40/324 (12%)
Query: 349 PASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSDEITGL 408
+L ++I +W PP S +L + D+ K+I + R L
Sbjct: 7 VTNLSVSVENLCTVIWTWNPPEGAS---SNCSLWYFSHFGDKQDKKI-APETRRSIEVPL 62
Query: 409 EPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISW 468
+ + + P + PP P+ L+ + M+ SW
Sbjct: 63 NERICLQVGSQCSTNESEKPS--ILVEKCISPPEGDPES--AVTELQCIWHNLSYMKCSW 118
Query: 469 IDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANITS---VQINDLRPSTQYEF 525
+ + + L + L + + ++ S+ +
Sbjct: 119 ------LPGRNTSPDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQH 172
Query: 526 TVKV-VRAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQI 584
+V++ V+ + P + + + W+ P++ +
Sbjct: 173 SVQIMVKDNAGKIKPSFNIVPLTSRVKPDPPHIKNL---SFHNDDLYVQWENPQNFISRC 229
Query: 585 SGYTILYSSDPNT------------DQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNS 632
Y + ++ + E V + V G+ P + +I+ + +
Sbjct: 230 LFYEVEVNNSQTETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRVKTN 289
Query: 633 AGS-------SPYSSTVTWTTASD 649
S +S ++ +
Sbjct: 290 KLCYEDDKLWSNWSQEMSIGKKRN 313
Score = 62.6 bits (151), Expect = 1e-10
Identities = 30/226 (13%), Positives = 52/226 (23%), Gaps = 27/226 (11%)
Query: 22 TPPNQYHLTSTTSMTASPLDTSTGSIEAINETLTLPSAPQSVSAIMVGPRSVALRWLPPT 81
+ S S S + SA + I + WLP
Sbjct: 63 NERICLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPGR 122
Query: 82 LPRGEILVYCVLYKREGSERER--------AYNATARVEAIIQGLHPNTSYTFRVVAYNA 133
Y + Y E+ + ++ +++ +
Sbjct: 123 NT-SPDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDN 181
Query: 134 LGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLE 193
G + S V P PP N+ L V WE P Y +
Sbjct: 182 AG-KIKPSFNIVPLTSRVK-PDPPHIKNLSFHND-DLYVQWENPQNFISRCLFYEVEVNN 238
Query: 194 EDTSVER---------------HVVTPQLSYELTGLSHFTLYSIWV 224
T V + + G+ TL ++ +
Sbjct: 239 SQTETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRI 284
Score = 48.7 bits (115), Expect = 3e-06
Identities = 29/227 (12%), Positives = 68/227 (29%), Gaps = 23/227 (10%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANI 509
P L V + ++ +W + + Y + + K I
Sbjct: 6 PVTNLSVSVENLCTVIWTW---------NPPEGASSNCSLWYF--SHFGDKQDKKIAPET 54
Query: 510 TSVQINDLRPSTQYEFTVKVV--RAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDP 567
L + + ++K S ++ + SA +L + +
Sbjct: 55 RRSIEVPLNERICLQVGSQCSTNESEKPSILVEKCISPPEGDPE-SAVTELQCIWH--NL 111
Query: 568 SLVNLNWQPPKSANGQISGYTILY--SSDPNTDQWIEESVVGDKMSTNVR----GLEPGR 621
S + +W P ++ + + YT+ Y S Q G +
Sbjct: 112 SYMKCSWLPGRNTS-PDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFE 170
Query: 622 IYYFKIKARNSAGSSPYSSTVTWTTASDMQEAGGIPNSNQVSNTMIL 668
+ +I +++AG S + T+ + I N + ++ + +
Sbjct: 171 QHSVQIMVKDNAGKIKPSFNIVPLTSRVKPDPPHIKNLSFHNDDLYV 217
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 114
Score = 94.5 bits (235), Expect = 2e-23
Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 6/106 (5%)
Query: 545 TTQEAAPASAPRDLTVVSKEGDPSLVNLNWQ--PPKSANGQISGYTILYSSDPNTD--QW 600
++ + P + P + + + + L W P + N I G+ I Y + + +
Sbjct: 2 SSGSSGPVAGPYITFTDAV--NETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDY 59
Query: 601 IEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTT 646
++ V GD+ ++ L+P Y K++ N G S +S+ + T
Sbjct: 60 KKDMVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICET 105
Score = 81.8 bits (202), Expect = 7e-19
Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 10/107 (9%)
Query: 243 TLSDKPSEPPAN---------SITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKG-ETV 292
+ S P P +I ++W N I G+ + Y+ D D +
Sbjct: 3 SGSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKD 62
Query: 293 TTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQD 339
GDR + I+ L T+Y IK+ N G ++ ET ++
Sbjct: 63 MVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETKARS 109
Score = 81.0 bits (200), Expect = 1e-18
Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 7/106 (6%)
Query: 57 PSAPQSVSAIMVGPRSVALRW--LPPTLPRGEILVYCVLYKREGSERERAYN----ATAR 110
+ P V ++ L+W +P + I + + Y+ S+ + Y R
Sbjct: 9 VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDR 68
Query: 111 VEAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSP 156
I L P TSY ++ +N G S+ + +T+ PS
Sbjct: 69 YWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETKARS-GPSS 113
Score = 76.8 bits (189), Expect = 4e-17
Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 7/112 (6%)
Query: 147 TEPEDHVPSPPLNVNIPVVGTSSLLVTWEK--PTVTNGEIKHYTLYYLEEDTSVERH--- 201
+ + P V +++++ W + N I + +YY D+ +
Sbjct: 2 SSGSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKK 61
Query: 202 --VVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEP 251
V + + ++ L T Y I + N G S + +T +
Sbjct: 62 DMVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETKARSGPSS 113
Score = 60.6 bits (147), Expect = 2e-11
Identities = 18/102 (17%), Positives = 42/102 (41%), Gaps = 6/102 (5%)
Query: 349 PASLKARPGGPSSIIVSWT--PPADQSIMVRGFTLGW---GKGVPDEFVKQILDVKQRSD 403
P ++I++ W P ++ + + GF + + ++ K +++ +
Sbjct: 12 PYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWH 71
Query: 404 EITGLEPNSDYVISLRAFNEMGDGPQ-KYESLRTRNEPPPQA 444
I+ L+P + Y I ++ FNE G+ T+ P +
Sbjct: 72 SISHLQPETSYDIKMQCFNEGGESEFSNVMICETKARSGPSS 113
Score = 59.4 bits (144), Expect = 5e-11
Identities = 18/121 (14%), Positives = 45/121 (37%), Gaps = 11/121 (9%)
Query: 436 TRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLL 495
+ P A P ++ ++ ++ + W + + + Y
Sbjct: 2 SSGSSGPVAG-----PYITFTDAVNETTIMLKW---MYIPASNNNTP-IHGFYIYYRPTD 52
Query: 496 GASNPRYKY--INANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPAS 553
++ YK + + I+ L+P T Y+ ++ ESE+S +++ T+ + S
Sbjct: 53 SDNDSDYKKDMVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETKARSGPS 112
Query: 554 A 554
+
Sbjct: 113 S 113
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER,
receptor tyrosine kinase mertk, FN3 domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 94.9 bits (236), Expect = 3e-23
Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 10/115 (8%)
Query: 231 GAGTTSQELSVQTLSDKPSEPPAN----------SITVRWQPPSRRGQNGIITGYKLRYK 280
G+ +S + T PS P N ++ +RW P + Q+G + GY++ +
Sbjct: 1 GSSGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHV 60
Query: 281 KKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAET 335
+ K + I+ + T +++ A+ G GP +D
Sbjct: 61 WQSAGISKELLEEVGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFI 115
Score = 89.1 bits (221), Expect = 3e-21
Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 4/118 (3%)
Query: 535 ESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPP--KSANGQISGYTILY- 591
S S +L +T E AP+ AP ++TV V++ W P K +G++ GY I +
Sbjct: 2 SSGSSGWILASTTEGAPSVAPLNVTV-FLNESSDNVDIRWMKPPTKQQDGELVGYRISHV 60
Query: 592 SSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649
+ + E V + + +I A G P+S V +
Sbjct: 61 WQSAGISKELLEEVGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFIPAH 118
Score = 77.2 bits (190), Expect = 4e-17
Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 10/122 (8%)
Query: 135 GAGLASSALPVKTEPEDHVPS-PPLNVNIPVVGTS-SLLVTWEKPTVT--NGEIKHYTLY 190
G+ +S + T E PS PLNV + + +S ++ + W KP +GE+ Y +
Sbjct: 1 GSSGSSGWILAST-TEG-APSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRIS 58
Query: 191 YLEED----TSVERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSD 246
++ + + V ++ H ++ + A G G S + + +
Sbjct: 59 HVWQSAGISKELLEEVGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFIPAH 118
Query: 247 KP 248
Sbjct: 119 SG 120
Score = 67.9 bits (166), Expect = 7e-14
Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 7/104 (6%)
Query: 58 SAPQSVSAIMVG-PRSVALRWLPP--TLPRGEILVYCVLYKREGSERERAYNATARV--- 111
AP +V+ + +V +RW+ P GE++ Y + + + + +
Sbjct: 20 VAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEEVGQNGS 79
Query: 112 EAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPS 155
A I N + T R+ A G G S + + P PS
Sbjct: 80 RARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFI-PAHSGPS 122
Score = 54.0 bits (130), Expect = 5e-09
Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 12/112 (10%)
Query: 323 GSGPATDWFSAETFSQDLGEFTVPDI-PASLKA-RPGGPSSIIVSWTPPADQSI--MVRG 378
GS ++ W A T P + P ++ ++ + W P + + G
Sbjct: 1 GSSGSSGWILASTTEG------APSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVG 54
Query: 379 FTLG--WGKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGP 428
+ + W + + + + I+ N+ + + A G GP
Sbjct: 55 YRISHVWQSAGISKELLEEVGQNGSRARISVQVHNATCTVRIAAVTRGGVGP 106
Score = 45.2 bits (107), Expect = 6e-06
Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 7/108 (6%)
Query: 450 PPMGLKSEV-LSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLL-GASNPRYKYINA 507
P+ + + S ++ I W P QQ GE Y + + G S + +
Sbjct: 21 APLNVTVFLNESSDNVDIRW---MKPPTKQQDGE-LVGYRISHVWQSAGISKELLEEVGQ 76
Query: 508 NITSVQINDLRPSTQYEFTVKVVRAKKESEWS-MIVLNTTQEAAPASA 554
N + +I+ + + V +S + + + P+S
Sbjct: 77 NGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFIPAHSGPSSG 124
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 119
Score = 93.7 bits (233), Expect = 6e-23
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 8/123 (6%)
Query: 135 GAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEE 194
G+ +S V+T ED VP P +++ + +SL V+W++P NG + Y + + E
Sbjct: 1 GSSGSSGPQLVRT-HED-VPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEY 58
Query: 195 DTSVERHVVT---PQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEP 251
+ + R L Y +TGL+ T Y+I V A G G S + S P
Sbjct: 59 NRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVS---ASTISSGVPPSG 115
Query: 252 PAN 254
P++
Sbjct: 116 PSS 118
Score = 92.5 bits (230), Expect = 2e-22
Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 3/113 (2%)
Query: 535 ESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSD 594
S S L T E P L+ + + ++WQ P NG ++GY I +
Sbjct: 2 SSGSSGPQLVRTHEDVP-GPVGHLSFSEI--LDTSLKVSWQEPGEKNGILTGYRISWEEY 58
Query: 595 PNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTA 647
T+ + + + V GL Y ++ A S G S++ +
Sbjct: 59 NRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTISSGV 111
Score = 90.6 bits (225), Expect = 6e-22
Identities = 37/129 (28%), Positives = 55/129 (42%), Gaps = 19/129 (14%)
Query: 231 GAGTTSQELSVQTLSDKPSEPP--------ANSITVRWQPPSRRGQNGIITGYKLRYKKK 282
G+ +S V+T D P S+ V WQ P +NGI+TGY++ +++
Sbjct: 1 GSSGSSGPQLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGE--KNGILTGYRISWEEY 58
Query: 283 DVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLGE 342
+ + + T Y +TGL TTY I++ AM G G SA T S
Sbjct: 59 N-RTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQ----VSASTISSG--- 110
Query: 343 FTVPDIPAS 351
P P+S
Sbjct: 111 -VPPSGPSS 118
Score = 82.5 bits (204), Expect = 5e-19
Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 6/105 (5%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARV--EAI 114
P +S + S+ + W P G + Y + ++ R + V E
Sbjct: 18 PGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTNTRVTHYLPNVTLEYR 77
Query: 115 IQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLN 159
+ GL T+YT V A + G G S++ T PS P +
Sbjct: 78 VTGLTALTTYTIEVAAMTSKGQGQVSAS----TISSGVPPSGPSS 118
Score = 71.7 bits (176), Expect = 3e-15
Identities = 27/124 (21%), Positives = 46/124 (37%), Gaps = 9/124 (7%)
Query: 323 GSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLG 382
GS ++ T +D VP L +S+ VSW P +++ ++ G+ +
Sbjct: 1 GSSGSSGPQLVRT-HED-----VPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRIS 54
Query: 383 W-GKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPP 441
W + V L +TGL + Y I + A G G ++ + P
Sbjct: 55 WEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTISS--GVP 112
Query: 442 PQAP 445
P P
Sbjct: 113 PSGP 116
Score = 50.1 bits (120), Expect = 9e-08
Identities = 22/131 (16%), Positives = 39/131 (29%), Gaps = 15/131 (11%)
Query: 425 GDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEG 484
G S P P L + S+++SW P + ++G
Sbjct: 1 GSSG---SSGPQLVRTHEDVPG---PVGHLSFSEILDTSLKVSW---QEPGE--KNGI-L 48
Query: 485 RHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLN 544
Y + + + Y+ ++ L T Y V + +K + + S
Sbjct: 49 TGYRISWEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSAS--- 105
Query: 545 TTQEAAPASAP 555
T P S P
Sbjct: 106 TISSGVPPSGP 116
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 113
Score = 91.8 bits (228), Expect = 2e-22
Identities = 38/107 (35%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
Query: 448 LIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINA 507
++PP+G+++ +LS ++RI+W D +LP Q + R+Y VR+ +N +YK NA
Sbjct: 9 MMPPVGVQASILSHDTIRITWADNSLPKH--QKITDSRYYTVRWKTN-IPANTKYKNANA 65
Query: 508 NITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASA 554
S + L+P+T YEF+V V + ++ S WSM TT E + S+
Sbjct: 66 TTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELSGPSS 112
Score = 73.7 bits (181), Expect = 4e-16
Identities = 18/109 (16%), Positives = 35/109 (32%), Gaps = 7/109 (6%)
Query: 545 TTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPP----KSANGQISGYTILYSSDPNTDQW 600
++ + P P + + + W YT+ + ++
Sbjct: 2 SSGSSGPMMPPVGVQASIL--SHDTIRITWADNSLPKHQKITDSRYYTVRWKTN-IPANT 58
Query: 601 IEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649
++ +S V GL+P +Y F + SS +S T TT
Sbjct: 59 KYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFEL 107
Score = 72.9 bits (179), Expect = 8e-16
Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 6/107 (5%)
Query: 149 PEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVT----NGEIKHYTLYYLEEDTSVERHVV- 203
PP+ V ++ ++ +TW ++ + ++YT+ + + ++
Sbjct: 4 GSSGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNA 63
Query: 204 -TPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPS 249
LSY +TGL TLY V+ G + T S T
Sbjct: 64 NATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELSGP 110
Score = 71.4 bits (175), Expect = 3e-15
Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 7/106 (6%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLPR----GEILVYCVLYKREGSERERA-YNATARV 111
P V A ++ ++ + W +LP+ + Y V +K + +
Sbjct: 9 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTL 68
Query: 112 EAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPP 157
++ GL PNT Y F V+ + S T
Sbjct: 69 SYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFEL--SGPSS 112
Score = 60.6 bits (147), Expect = 2e-11
Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 5/101 (4%)
Query: 349 PASLKARPGGPSSIIVSWTPPADQS----IMVRGFTLGWGKGVPDEFVKQILDVKQRSDE 404
P ++A +I ++W + R +T+ W +P + + S
Sbjct: 12 PVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYL 71
Query: 405 ITGLEPNSDYVISLRAFNEMGDGPQ-KYESLRTRNEPPPQA 444
+TGL+PN+ Y S+ T P +
Sbjct: 72 VTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELSGPSS 112
Score = 58.3 bits (141), Expect = 1e-10
Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 13/105 (12%)
Query: 243 TLSDKPSEPPAN---------SITVRWQPPS--RRGQNGIITGYKLRYKKKDVKKDKGET 291
+ S P PP +I + W S + + Y +R+K K +
Sbjct: 3 SGSSGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKN 62
Query: 292 VTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETF 336
Y++TGL +T Y+ + S + TF
Sbjct: 63 ANATTLS--YLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTF 105
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 123
Score = 91.9 bits (228), Expect = 3e-22
Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 3/115 (2%)
Query: 440 PPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASN 499
P ++PP+G+++ L+ ++R+SW D ++P Q E R Y VR+ +++
Sbjct: 11 SVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKN--QKTSEVRLYTVRWR-TSFSAS 67
Query: 500 PRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASA 554
+YK + S L+P+T YEF+V V + ++ S WSM TT EA+ S+
Sbjct: 68 AKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEASGPSS 122
Score = 76.8 bits (189), Expect = 5e-17
Identities = 25/116 (21%), Positives = 42/116 (36%), Gaps = 6/116 (5%)
Query: 140 SSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVT----NGEIKHYTLYYLEED 195
SS P PP+ V + ++ V+W +V E++ YT+ +
Sbjct: 5 SSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSF 64
Query: 196 TSVERHVV--TPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPS 249
++ ++ T LSY TGL T+Y V+ + T S T
Sbjct: 65 SASAKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEASGP 120
Score = 71.8 bits (176), Expect = 3e-15
Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 7/120 (5%)
Query: 43 STGSIEAINETLTLPSAPQSVSAIMVGPRSVALRWLPPTLPR----GEILVYCVLYKREG 98
S+G ++ + T P V A+ + +V + W ++P+ E+ +Y V ++
Sbjct: 5 SSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSF 64
Query: 99 SERER-AYNATARVEAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPP 157
S + T + GL PNT Y F V+ + S T
Sbjct: 65 SASAKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEA--SGPSS 122
Score = 71.1 bits (174), Expect = 5e-15
Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 7/109 (6%)
Query: 545 TTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQ----ISGYTILYSSDPNTDQW 600
+ P P + V+ V ++W Q + YT+ + + +
Sbjct: 12 VPDLSTPMLPPVGVQAVAL--THDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAK 69
Query: 601 IEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649
+ +S GL+P +Y F + + SS +S T TT
Sbjct: 70 YKS-EDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEA 117
Score = 59.9 bits (145), Expect = 4e-11
Identities = 21/106 (19%), Positives = 33/106 (31%), Gaps = 5/106 (4%)
Query: 344 TVPDIPASLKARPGGPSSIIVSWTPPADQS----IMVRGFTLGWGKGVPDEFVKQILDVK 399
T P ++A ++ VSW + VR +T+ W + D
Sbjct: 17 TPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYKSEDTT 76
Query: 400 QRSDEITGLEPNSDYVISLRAFNEMGDGPQ-KYESLRTRNEPPPQA 444
S TGL+PN+ Y S+ T P +
Sbjct: 77 SLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEASGPSS 122
Score = 57.2 bits (138), Expect = 4e-10
Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 13/117 (11%)
Query: 231 GAGTTSQELSVQTLSDKPSEPPAN---------SITVRWQPPS--RRGQNGIITGYKLRY 279
G+ +S + P PP ++ V W S + + + Y +R+
Sbjct: 1 GSSGSSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRW 60
Query: 280 KKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETF 336
+ K ++ T Y TGL +T Y+ + S + A T+
Sbjct: 61 RTSFSASAKYKSEDTTSLS--YTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTY 115
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 90.8 bits (226), Expect = 4e-22
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 13/102 (12%)
Query: 243 TLSDKPSEPPAN---------SITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVT 293
+ S PS P N + + W PP +NG I Y + ++ + + +
Sbjct: 3 SGSSGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFR----DINSQQELQ 58
Query: 294 TAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAET 335
+ +TGL TTY IK+ A GSGP + + T
Sbjct: 59 NITTDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRT 100
Score = 90.1 bits (224), Expect = 7e-22
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 149 PEDHVPS-PPLNVNIPVVGTSSLLVTWEKPTVT--NGEIKHYTLYYLEEDTSVERHVVTP 205
PS P N+++ + TS+ + W+ P + NG I YT+ + + ++ E +T
Sbjct: 4 GSS-GPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQNITT 62
Query: 206 QLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTL 244
+ LTGL T Y I V A G+G S + +T+
Sbjct: 63 DTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRTM 101
Score = 88.1 bits (219), Expect = 3e-21
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 545 TTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPP--KSANGQISGYTILYSSDPNTDQWIE 602
++ + P+ P++L V S L W PP NG+I YT+++ + + E
Sbjct: 2 SSGSSGPSGFPQNLHVTG--LTTSTTELAWDPPVLAERNGRIISYTVVFR---DINSQQE 56
Query: 603 ESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTT 646
+ + GL+P Y K++A S GS P S ++ T
Sbjct: 57 LQNITTDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRT 100
Score = 81.6 bits (202), Expect = 6e-19
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTL--PRGEILVYCVLYKREGSERERAYNATARVEAI 114
PQ++ + + L W PP L G I+ Y V+++ S++E N T
Sbjct: 9 SGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQEL-QNITTDTRFT 67
Query: 115 IQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEP 149
+ GL P+T+Y +V A+ + G+G S ++ +T P
Sbjct: 68 LTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRTMP 102
Score = 56.9 bits (138), Expect = 3e-10
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 345 VPD-IPASLKARPGGPSSIIVSWTPPADQSI--MVRGFTLG-WGKGVPDEFVKQILDVKQ 400
P P +L S+ ++W PP + +T+ E
Sbjct: 7 GPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQN---ITTD 63
Query: 401 RSDEITGLEPNSDYVISLRAFNEMGDGP 428
+TGL+P++ Y I +RA+ G GP
Sbjct: 64 TRFTLTGLKPDTTYDIKVRAWTSKGSGP 91
Score = 49.2 bits (118), Expect = 2e-07
Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 7/97 (7%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANI 509
P L L+ + ++W P +++G Y V + ++ +
Sbjct: 11 FPQNLHVTGLTTSTTELAW---DPPVLAERNGRI-ISYTVVFR---DINSQQELQNITTD 63
Query: 510 TSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTT 546
T + L+P T Y+ V+ +K S + + T
Sbjct: 64 TRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRT 100
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 90.9 bits (226), Expect = 5e-22
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Query: 544 NTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEE 603
++ +AAP S + + V+L WQ P+ NG I Y I Y + +
Sbjct: 4 GSSGQAAP-SQVVVIRQERA--GQTSVSLLWQEPEQPNGIILEYEIKYYEK-DKEMQSYS 59
Query: 604 SVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASDMQEAGG 655
++ V GL+PG Y F+++AR SAG +S + T + G
Sbjct: 60 TLKAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGKPSGPSSG 111
Score = 89.3 bits (222), Expect = 1e-21
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Query: 139 ASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSV 198
SS + + PS + + G +S+ + W++P NG I Y + Y E+D +
Sbjct: 1 GSSG----SSGQA-APSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEM 55
Query: 199 ERH--VVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPA 253
+ + + ++GL T Y V A G G SQ + V+T KPS P +
Sbjct: 56 QSYSTLKAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVET--GKPSGPSS 110
Score = 83.6 bits (207), Expect = 2e-19
Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 20/120 (16%)
Query: 240 SVQTLSDKPSEPP--------ANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGET 291
S + PS+ S+++ WQ P + NGII Y+++Y +KD + T
Sbjct: 3 SGSSGQAAPSQVVVIRQERAGQTSVSLLWQEPEQ--PNGIILEYEIKYYEKDKEMQSYST 60
Query: 292 VTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPAS 351
+ ++GL T Y ++ A G G + ET P P+S
Sbjct: 61 LKA--VTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVET--------GKPSGPSS 110
Score = 82.8 bits (205), Expect = 3e-19
Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 5/104 (4%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNA-TARVEAII 115
PS + G SV+L W P P G IL Y + Y + E + A +
Sbjct: 11 PSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAVTTRATV 70
Query: 116 QGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLN 159
GL P T Y F+V A + G G S A+ V+T PS P +
Sbjct: 71 SGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGK----PSGPSS 110
Score = 62.8 bits (153), Expect = 3e-12
Identities = 15/85 (17%), Positives = 33/85 (38%)
Query: 344 TVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSD 403
P ++ G +S+ + W P + ++ + + + + + L
Sbjct: 9 AAPSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAVTTRA 68
Query: 404 EITGLEPNSDYVISLRAFNEMGDGP 428
++GL+P + YV +RA G G
Sbjct: 69 TVSGLKPGTRYVFQVRARTSAGCGR 93
Score = 49.7 bits (119), Expect = 1e-07
Identities = 21/106 (19%), Positives = 44/106 (41%), Gaps = 8/106 (7%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANI 509
+ ++ E S+ + W P+Q +G Y ++Y + Y + A
Sbjct: 13 QVVVIRQERAGQTSVSLLW---QEPEQ--PNGI-ILEYEIKY-YEKDKEMQSYSTLKAVT 65
Query: 510 TSVQINDLRPSTQYEFTVKVVRAKKESEWS-MIVLNTTQEAAPASA 554
T ++ L+P T+Y F V+ + +S + + T + + P+S
Sbjct: 66 TRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGKPSGPSSG 111
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, NG-CAM related cell adhesion
molecule, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 125
Score = 90.9 bits (226), Expect = 6e-22
Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 15/115 (13%)
Query: 236 SQELSVQTLSDKPSEPPAN---------SITVRWQPPSRRGQNGIITGYKLRYKKKD--- 283
S S + D P P N V W P + G + GY++ Y K
Sbjct: 2 SSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSS 61
Query: 284 ---VKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAET 335
+ + + +T G + ++ GL + Y + + +N G GPA+ T
Sbjct: 62 KRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNT 116
Score = 85.9 bits (213), Expect = 4e-20
Identities = 28/120 (23%), Positives = 44/120 (36%), Gaps = 11/120 (9%)
Query: 539 SMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPP--KSANGQISGYTILYSSDPN 596
S + E P AP ++ V + +L ++W P KS G + GY I Y +
Sbjct: 2 SSGSSGHSGEDLPMVAPGNVRVNVV--NSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQS 59
Query: 597 TDQWIEE-------SVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649
+ + + G K + GLEP Y ++ N G P S + T
Sbjct: 60 SSKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEG 119
Score = 80.5 bits (199), Expect = 2e-18
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 17/128 (13%)
Query: 139 ASSALPVKTEPEDHVPS-PPLNVNIPVVGTSSLLVTWEKPTVT--NGEIKHYTLYYLEED 195
SS + ED +P P NV + VV ++ V W+ + G ++ Y +YY +
Sbjct: 1 GSSGSSGHS-GED-LPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQ 58
Query: 196 TSVERH----------VVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLS 245
+S +R+ + L GL F+ Y++ V NG G G S + T
Sbjct: 59 SSSKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPE 118
Query: 246 DKPSEPPA 253
P +
Sbjct: 119 GSG--PSS 124
Score = 75.5 bits (186), Expect = 2e-16
Identities = 33/125 (26%), Positives = 47/125 (37%), Gaps = 14/125 (11%)
Query: 45 GSIEAINETL-TLPS-APQSVSAIMVGPRSVALRWLPPTL--PRGEILVYCVLYKREGSE 100
GS + + LP AP +V +V + W P L RG + Y + Y + S
Sbjct: 1 GSSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSS 60
Query: 101 RERAYN---------ATARVEAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPED 151
+R ++ ++ GL P + YT V N G G AS T PE
Sbjct: 61 SKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNT-PEG 119
Query: 152 HVPSP 156
PS
Sbjct: 120 SGPSS 124
Score = 56.7 bits (137), Expect = 6e-10
Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 11/105 (10%)
Query: 349 PASLKARPGGPSSIIVSWTPPADQSI--MVRGFTLG-WGKGVPDEFVKQILDVK------ 399
P +++ + V W P +SI ++G+ + W + ++ ++ K
Sbjct: 18 PGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQG 77
Query: 400 -QRSDEITGLEPNSDYVISLRAFNEMGDGPQ-KYESLRTRNEPPP 442
+ + GLEP S Y +++R N G+GP T P
Sbjct: 78 SKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGSGP 122
Score = 48.6 bits (116), Expect = 4e-07
Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 11/112 (9%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKY----- 504
P ++ V++ + W G + Y + Y +S ++
Sbjct: 17 APGNVRVNVVNSTLAEVHW---DPVPLKSIRGHL-QGYRIYYWKTQSSSKRNRRHIEKKI 72
Query: 505 --INANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASA 554
+ T + L P + Y V+VV K E S + T E + S+
Sbjct: 73 LTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGSGPSS 124
>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain,
cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond,
glycoprotein, membrane; 2.14A {Homo sapiens}
Length = 201
Score = 91.7 bits (227), Expect = 3e-21
Identities = 42/208 (20%), Positives = 76/208 (36%), Gaps = 22/208 (10%)
Query: 56 LPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAII 115
+P P++V V +++ L+W P +G++ + Y +++ T E
Sbjct: 2 VP-PPENVRMNSVNFKNI-LQWESPAFAKGQL-TFTAQYLSYRIFQDKCMQ-TTLTECDF 57
Query: 116 QGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWE 175
L +T RV A A S + + P D P + + V+ L + +
Sbjct: 58 SSLSKYGDHTLRVRAEFA---DEHSDWVQITFSPVDDTIIGPPGMQVEVLADC-LHMRFL 113
Query: 176 KPTVTNGEIK----------HYTLYYLEEDTSVERHVVTPQLSYELTGLSHFTLYSIWVV 225
P + N Y + Y ++ T + + L L +T Y + V
Sbjct: 114 APKIENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQITPQYDFEVLRNLEPWTTYCVQVR 173
Query: 226 AH--NGNGAGTTSQELSVQTLSDK--PS 249
+ N AG S+ + QT D+ PS
Sbjct: 174 GFLPDRNKAGEWSEPVCEQTTHDETVPS 201
Score = 81.7 bits (201), Expect = 7e-18
Identities = 38/203 (18%), Positives = 71/203 (34%), Gaps = 18/203 (8%)
Query: 156 PPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTPQLSYELTGLS 215
PP NV + V ++L WE P G++ +T YL ++ + T + + LS
Sbjct: 4 PPENVRMNSVNFKNIL-QWESPAFAKGQL-TFTAQYLSYRIFQDKCMQTTLTECDFSSLS 61
Query: 216 HFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPS------EPPANSITVRWQPPSRRGQN 269
+ +++ V A + Q E A+ + +R+ P +
Sbjct: 62 KYGDHTLRVRAEFADEHSDWVQITFSPVDDTIIGPPGMQVEVLADCLHMRFLAPKIENEY 121
Query: 270 GIIT----GYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWA--MNVNG 323
T Y + K+ E V+ L TTY +++ + N
Sbjct: 122 ETWTMKNVYNSWTYNVQYWKQGTDEKFQITPQYDFEVLRNLEPWTTYCVQVRGFLPDRNK 181
Query: 324 SGPATDWFSAETFSQDLGEFTVP 346
+G ++ +T + TVP
Sbjct: 182 AGEWSEPVCEQT----THDETVP 200
Score = 61.3 bits (148), Expect = 8e-11
Identities = 25/176 (14%), Positives = 54/176 (30%), Gaps = 23/176 (13%)
Query: 486 HYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNT 545
+ +Y + K + +T + L + V+ A + S+W I +
Sbjct: 32 TFTAQYL---SYRIFQDKCMQTTLTECDFSSLSKYGDHTLRVRAEFADEHSDWVQITFSP 88
Query: 546 TQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISG----------YTILYSSDP 595
+ P + V +++ + PK N + Y + Y
Sbjct: 89 VDDTII--GPPGMQVEVLADC---LHMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKQG 143
Query: 596 NTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGS--SPYSSTVTWTTASD 649
+++ + +R LEP Y +++ + +S V T D
Sbjct: 144 TDEKF---QITPQYDFEVLRNLEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQTTHD 196
Score = 56.7 bits (136), Expect = 3e-09
Identities = 22/180 (12%), Positives = 53/180 (29%), Gaps = 23/180 (12%)
Query: 257 TVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKL 316
++W+ P+ + +Y + +DK T + L+K + +++
Sbjct: 18 ILQWESPAFAKGQ---LTFTAQYLSYRIFQDKCMQTT----LTECDFSSLSKYGDHTLRV 70
Query: 317 WAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMV 376
A + +DW D P + + A + + + P ++
Sbjct: 71 RAEFADEH---SDWVQITFSPVDDTIIGPPGMQVEVLAD-----CLHMRFLAPKIENEYE 122
Query: 377 RGFTLGWGKGVP--------DEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGP 428
K + + + + LEP + Y + +R F +
Sbjct: 123 TWTMKNVYNSWTYNVQYWKQGTDEKFQITPQYDFEVLRNLEPWTTYCVQVRGFLPDRNKA 182
Score = 41.6 bits (97), Expect = 4e-04
Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 7/93 (7%)
Query: 554 APRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTN 613
P ++ + S L W+ P A GQ++ +T Y S + ++ + +
Sbjct: 4 PPENVRMNSVNFK---NILQWESPAFAKGQLT-FTAQYLS---YRIFQDKCMQTTLTECD 56
Query: 614 VRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTT 646
L + +++A + S +
Sbjct: 57 FSSLSKYGDHTLRVRAEFADEHSDWVQITFSPV 89
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 88.3 bits (219), Expect = 3e-21
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
Query: 545 TTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEES 604
++ + P S + VS + L+W P+ NG I Y I Y +++
Sbjct: 2 SSGSSGP-STVPIMHQVSA--TMRSITLSWPQPEQPNGIILDYEIRYYEK-EHNEFNSSM 57
Query: 605 VVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASDMQEAGG 655
+ + GL PG +Y +++AR AG +S + + T +D + G
Sbjct: 58 ARSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTLTDSGPSSG 108
Score = 81.7 bits (202), Expect = 6e-19
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Query: 153 VPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLE--EDTSVERHVVTPQLSYE 210
PS ++ S+ ++W +P NG I Y + Y E + + +
Sbjct: 7 GPSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMARSQTNTAR 66
Query: 211 LTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEP 251
+ GL +Y + V A G G S ++ QTL+D
Sbjct: 67 IDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTLTDSGPSS 107
Score = 79.4 bits (196), Expect = 4e-18
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNA-TARVEAII 115
PS + + RS+ L W P P G IL Y + Y + + A + A I
Sbjct: 8 PSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMARSQTNTARI 67
Query: 116 QGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPE 150
GL P Y +V A G G S + +T +
Sbjct: 68 DGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTLTD 102
Score = 78.3 bits (193), Expect = 1e-17
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 12/101 (11%)
Query: 243 TLSDKPSEPP--------ANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTT 294
+ S PS P SIT+ W P + NGII Y++RY +K+ ++ +
Sbjct: 3 SGSSGPSTVPIMHQVSATMRSITLSWPQPEQ--PNGIILDYEIRYYEKE--HNEFNSSMA 58
Query: 295 AGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAET 335
I GL Y +++ A V G G + +T
Sbjct: 59 RSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQT 99
Score = 63.2 bits (154), Expect = 2e-12
Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 1/102 (0%)
Query: 344 TVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSD 403
+ P + SI +SW P + ++ + + + + +EF + + +
Sbjct: 6 SGPSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMARSQTNTA 65
Query: 404 EITGLEPNSDYVISLRAFNEMGDGPQ-KYESLRTRNEPPPQA 444
I GL P YV+ +RA G G +T + P +
Sbjct: 66 RIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTLTDSGPSS 107
Score = 45.5 bits (108), Expect = 3e-06
Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 7/105 (6%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANI 509
+ + S+ +SW Q +Q Y +RY + +
Sbjct: 10 TVPIMHQVSATMRSITLSW------PQPEQPNGIILDYEIRYYEK-EHNEFNSSMARSQT 62
Query: 510 TSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASA 554
+ +I+ LRP Y V+ ++S + T + S+
Sbjct: 63 NTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTLTDSGPSS 107
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites,
calcium, cell adhesion molecules, cell cycle cell LINE,
conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C
3n1q_C 3n1m_C 3n1g_C 3n1p_C
Length = 102
Score = 86.7 bits (215), Expect = 1e-20
Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 6/102 (5%)
Query: 549 AAPASAPRDLTVVSKEGDPSLVNLNWQPP--KSANGQISGYTILYSSDPNTD--QWIEES 604
+ P + P + + + L W + N I G+ I Y + + + +
Sbjct: 2 STPITGPHIAYTEAV--SDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDV 59
Query: 605 VVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTT 646
V G K + L+P Y K++ N G S +S+ + T
Sbjct: 60 VEGSKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICET 101
Score = 83.2 bits (206), Expect = 1e-19
Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 10/98 (10%)
Query: 248 PSEPPAN---------SITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKG-ETVTTAGD 297
P P I ++W N I G+ + Y+ D D + G
Sbjct: 4 PITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGS 63
Query: 298 RRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAET 335
++ ++I L T+Y IK+ N G ++ ET
Sbjct: 64 KQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICET 101
Score = 79.7 bits (197), Expect = 3e-18
Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 8/99 (8%)
Query: 153 VPS-PPLNVNIPVVGTSSLLVTWEKPTV--TNGEIKHYTLYYLEEDTSVERH-----VVT 204
P P V + +++ W N I+ + +YY D+ + V
Sbjct: 3 TPITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEG 62
Query: 205 PQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQT 243
+ + + L T Y I + N G S + +T
Sbjct: 63 SKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICET 101
Score = 77.4 bits (191), Expect = 2e-17
Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 6/98 (6%)
Query: 57 PSAPQSVSAIMVGPRSVALRW--LPPTLPRGEILVYCVLYKREGSERERAYN----ATAR 110
+ P V + L+W +P + I + + Y+ S+ + Y ++
Sbjct: 5 ITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGSK 64
Query: 111 VEAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTE 148
+I L P TSY ++ +N G S+ + +T+
Sbjct: 65 QWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICETK 102
Score = 60.5 bits (147), Expect = 2e-11
Identities = 16/91 (17%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 344 TVPDI-PASLKARPGGPSSIIVSWTPPA--DQSIMVRGFTLGW---GKGVPDEFVKQILD 397
+ P P + I++ WT + + ++GF + + ++ + +++
Sbjct: 2 STPITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVE 61
Query: 398 VKQRSDEITGLEPNSDYVISLRAFNEMGDGP 428
++ I L+P + Y I ++ FNE G+
Sbjct: 62 GSKQWHMIGHLQPETSYDIKMQCFNEGGESE 92
Score = 57.4 bits (139), Expect = 2e-10
Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 6/100 (6%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKY--INA 507
P +E +S + + W T + + + + Y ++ YK +
Sbjct: 7 GPHIAYTEAVSDTQIMLKW---TYIPSSNNNTP-IQGFYIYYRPTDSDNDSDYKRDVVEG 62
Query: 508 NITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQ 547
+ I L+P T Y+ ++ ESE+S +++ T+
Sbjct: 63 SKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICETK 102
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3,
immunoglobulin-like beta- sandwich fold, KIAA0970,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 106
Score = 86.2 bits (214), Expect = 2e-20
Identities = 20/102 (19%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Query: 545 TTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEES 604
++ + P + V + + +NW+ P S ++ Y + + + ++
Sbjct: 2 SSGSSGP-DQCKPPQVTCR--SATCAQVNWEVPLSNGTDVTEYRLEWGGV---EGSMQIC 55
Query: 605 VVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTT 646
G +S ++GL P YY +++A + G+ P+S V T
Sbjct: 56 YCGPGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVT 97
Score = 80.8 bits (200), Expect = 1e-18
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
Query: 153 VPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTPQLSYELT 212
P + + V WE P ++ Y L + + S++ P LSYE+
Sbjct: 7 GPDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSMQICYCGPGLSYEIK 66
Query: 213 GLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPA 253
GLS T Y V A + GAG S+ ++ T PS P+
Sbjct: 67 GLSPATTYYCRVQALSVVGAGPFSEVVACVTP---PSSGPS 104
Score = 79.7 bits (197), Expect = 3e-18
Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 5/101 (4%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAIIQ 116
P + + W P ++ Y + + + Y I+
Sbjct: 8 PDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSMQICYCGPGL-SYEIK 66
Query: 117 GLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPP 157
GL P T+Y RV A + +GAG S + T P S P
Sbjct: 67 GLSPATTYYCRVQALSVVGAGPFSEVVACVTPP----SSGP 103
Score = 61.2 bits (149), Expect = 8e-12
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
Query: 344 TVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSD 403
+ PD + + V+W P V + L WG + ++ S
Sbjct: 6 SGPDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGV--EGSMQICYCGPGLSY 63
Query: 404 EITGLEPNSDYVISLRAFNEMGDGP 428
EI GL P + Y ++A + +G GP
Sbjct: 64 EIKGLSPATTYYCRVQALSVVGAGP 88
Score = 60.4 bits (147), Expect = 2e-11
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 253 ANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTY 312
A V W+ P G +T Y+L + + + G Y I GL+ +TTY
Sbjct: 21 ATCAQVNWEVPLSNG--TDVTEYRLEWGGVE----GSMQICYCGPGLSYEIKGLSPATTY 74
Query: 313 QIKLWAMNVNGSGPATDWFSAET 335
++ A++V G+GP ++ + T
Sbjct: 75 YCRVQALSVVGAGPFSEVVACVT 97
Score = 45.0 bits (107), Expect = 5e-06
Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 9/105 (8%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANI 509
+ S +++W +P +G + Y + + + G+ Y
Sbjct: 10 QCKPPQVTCRSATCAQVNW---EVPLS---NGTDVTEYRLEWGGVEGSMQICY---CGPG 60
Query: 510 TSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASA 554
S +I L P+T Y V+ + +S +V T ++ S+
Sbjct: 61 LSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTPPSSGPSS 105
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
2.10A {Homo sapiens}
Length = 103
Score = 84.8 bits (210), Expect = 4e-20
Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 2/101 (1%)
Query: 547 QEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVV 606
++ +S P L VV P+ + ++W S+ + Y I Y E +V
Sbjct: 3 SGSSVSSVPTKLEVVDA--TPTSLKISWDAYYSSWQNVKYYRITYGETGGDSPVQEFTVP 60
Query: 607 GDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTA 647
G + + GL+PG Y + A ++ ++
Sbjct: 61 GYYSTATISGLKPGVDYTITVYAYDTFFPGYEPNSPISINY 101
Score = 73.3 bits (180), Expect = 6e-16
Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 4/91 (4%)
Query: 55 TLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYK---REGSERERAYNATARV 111
++ S P + + P S+ + W + Y + Y + +E
Sbjct: 6 SVSSVPTKLEVVDATPTSLKISWDAYYSSWQNVKYYRITYGETGGDSPVQEFTVPGYYS- 64
Query: 112 EAIIQGLHPNTSYTFRVVAYNALGAGLASSA 142
A I GL P YT V AY+ G ++
Sbjct: 65 TATISGLKPGVDYTITVYAYDTFFPGYEPNS 95
Score = 72.1 bits (177), Expect = 1e-15
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Query: 153 VPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVT---PQLSY 209
V S P + + +SL ++W+ + +K+Y + Y E T +
Sbjct: 7 VSSVPTKLEVVDATPTSLKISWDAYYSSWQNVKYYRITYGETGGDSPVQEFTVPGYYSTA 66
Query: 210 ELTGLSHFTLYSIWVVAHNGNGAG-TTSQELSVQT 243
++GL Y+I V A++ G + +S+
Sbjct: 67 TISGLKPGVDYTITVYAYDTFFPGYEPNSPISINY 101
Score = 64.8 bits (158), Expect = 5e-13
Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 12/90 (13%)
Query: 248 PSEPPAN---------SITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDR 298
S P S+ + W + Y++ Y + + T G
Sbjct: 7 VSSVPTKLEVVDATPTSLKISWDAYYSS--WQNVKYYRITYGETG-GDSPVQEFTVPGYY 63
Query: 299 RLYVITGLNKSTTYQIKLWAMNVNGSGPAT 328
I+GL Y I ++A + G
Sbjct: 64 STATISGLKPGVDYTITVYAYDTFFPGYEP 93
Score = 63.2 bits (154), Expect = 2e-12
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 344 TVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQI-LDVKQRS 402
+V +P L+ P+S+ +SW V+ + + +G+ D V++ + +
Sbjct: 6 SVSSVPTKLEVVDATPTSLKISWDAYYSSWQNVKYYRITYGETGGDSPVQEFTVPGYYST 65
Query: 403 DEITGLEPNSDYVISLRAFNEMGDGPQKYE 432
I+GL+P DY I++ A++ G +
Sbjct: 66 ATISGLKPGVDYTITVYAYDTFFPGYEPNS 95
Score = 50.5 bits (121), Expect = 5e-08
Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 6/90 (6%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANI 509
P L+ +P S++ISW D + + ++Y + Y G S + +
Sbjct: 10 VPTKLEVVDATPTSLKISW------DAYYSSWQNVKYYRITYGETGGDSPVQEFTVPGYY 63
Query: 510 TSVQINDLRPSTQYEFTVKVVRAKKESEWS 539
++ I+ L+P Y TV
Sbjct: 64 STATISGLKPGVDYTITVYAYDTFFPGYEP 93
>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine
receptor complex, alpha helical cytokin beta sandwhich
receptor fold, signaling complex; HET: NAG; 2.80A {Homo
sapiens}
Length = 221
Score = 84.9 bits (209), Expect = 9e-19
Identities = 38/224 (16%), Positives = 69/224 (30%), Gaps = 24/224 (10%)
Query: 49 AINETLTLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNAT 108
A+ P +++ + + ++V L+W PP +G + Y V Y G ++ +
Sbjct: 1 AVPCVSGGLPKPANITFLSINMKNV-LQWTPPEGLQGVKVTYTVQYFIYGQKKWLNKSEC 59
Query: 109 ARVEAI-----IQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIP 163
+ + Y RV A G + A + P P V +
Sbjct: 60 RNINRTYCDLSAETSDYEHQYYARVRAIW--GTKCSKWAESGRFYPFLETQIGPPEVALT 117
Query: 164 VVGTSSLLVTWEKPTVTNGEIKH-------------YTLYYLEEDTSVERHVVTPQLSYE 210
S+ V P + Y + L ++ +
Sbjct: 118 TDEK-SISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNHTLV 176
Query: 211 LTGLSHFTLYSIWVVAH--NGNGAGTTSQELSVQTLSDKPSEPP 252
LT L TLY + V + S++ +TL D+ S
Sbjct: 177 LTWLEPNTLYCVHVESFVPGPPRRAQPSEKQCARTLKDQSSIEG 220
Score = 73.4 bits (179), Expect = 8e-15
Identities = 31/202 (15%), Positives = 59/202 (29%), Gaps = 23/202 (11%)
Query: 156 PPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLE----EDTSVERHVVTPQLSYEL 211
P N+ + ++L W P G YT+ Y + + + +L
Sbjct: 11 KPANITFLSINMKNVL-QWTPPEGLQGVKVTYTVQYFIYGQKKWLNKSECRNINRTYCDL 69
Query: 212 T--GLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPP-------ANSITVRWQP 262
+ + Y V A G ++ + PP SI+V
Sbjct: 70 SAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSISVVLTA 129
Query: 263 PSR--RGQNGIITGYK-----LRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIK 315
P + R + + L+Y + T + V+T L +T Y +
Sbjct: 130 PEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNHTLVLTWLEPNTLYCVH 189
Query: 316 LWA--MNVNGSGPATDWFSAET 335
+ + ++ A T
Sbjct: 190 VESFVPGPPRRAQPSEKQCART 211
Score = 56.4 bits (135), Expect = 5e-09
Identities = 24/203 (11%), Positives = 57/203 (28%), Gaps = 11/203 (5%)
Query: 361 SIIVSWTPPADQSIMVRGFTLGWGKGVPD--EFVKQILDVKQRSDEIT--GLEPNSDYVI 416
++ WTPP + +T+ + + ++ + +++ + Y
Sbjct: 23 KNVLQWTPPEGLQGVKVTYTVQYFIYGQKKWLNKSECRNINRTYCDLSAETSDYEHQYYA 82
Query: 417 SLRAFNEMGDGPQKYES-LRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPD 475
+RA E P+V + V + P+
Sbjct: 83 RVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSISV----VLTAPEKWKRNPE 138
Query: 476 QFQQHGEEGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVV--RAK 533
++ L +L + R ++ + L P+T Y V+
Sbjct: 139 DLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNHTLVLTWLEPNTLYCVHVESFVPGPP 198
Query: 534 KESEWSMIVLNTTQEAAPASAPR 556
+ ++ S T + + R
Sbjct: 199 RRAQPSEKQCARTLKDQSSIEGR 221
Score = 50.6 bits (120), Expect = 4e-07
Identities = 29/187 (15%), Positives = 54/187 (28%), Gaps = 22/187 (11%)
Query: 255 SITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVIT--GLNKSTTY 312
++W PP G G+ Y ++Y KK ++ +R ++ + Y
Sbjct: 23 KNVLQWTPP--EGLQGVKVTYTVQYFIYGQKKWLNKSECRNINRTYCDLSAETSDYEHQY 80
Query: 313 QIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQ 372
++ A+ W + F L P + SI V T P
Sbjct: 81 YARVRAIWGTKCSK---WAESGRFYPFL---ETQIGPPEVALTTDE-KSISVVLTAPEKW 133
Query: 373 SIMVRGFTLGWGKGVPD-----------EFVKQILDVKQRSDEITGLEPNSDYVISLRAF 421
+ + + V + +T LEPN+ Y + + +F
Sbjct: 134 KRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNHTLVLTWLEPNTLYCVHVESF 193
Query: 422 NEMGDGP 428
Sbjct: 194 VPGPPRR 200
Score = 47.5 bits (112), Expect = 5e-06
Identities = 25/180 (13%), Positives = 48/180 (26%), Gaps = 21/180 (11%)
Query: 486 HYLVRYTHLLGASNPRYKYINANITS----VQINDLRPSTQYEFTVKVVRAKKESEWSMI 541
Y V+Y + G K NI + QY V+ + K S+W+
Sbjct: 40 TYTVQYF-IYGQKKWLNKSECRNINRTYCDLSAETSDYEHQYYARVRAIWGTKCSKWAES 98
Query: 542 VLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWI 601
P V+ D +++ P+ + + ++
Sbjct: 99 GRFYPFLETQIGPP----EVALTTDEKSISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYN 154
Query: 602 ----------EESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGS--SPYSSTVTWTTASD 649
S + + LEP +Y +++ + S T D
Sbjct: 155 VSVLNTKSNRTWSQCVTNHTLVLTWLEPNTLYCVHVESFVPGPPRRAQPSEKQCARTLKD 214
Score = 46.0 bits (108), Expect = 2e-05
Identities = 19/127 (14%), Positives = 42/127 (33%), Gaps = 8/127 (6%)
Query: 549 AAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGD 608
+ P ++T +S L W PP+ G YT+ Y +W+ +S +
Sbjct: 6 SGGLPKPANITFLSINMK---NVLQWTPPEGLQGVKVTYTVQYFIY-GQKKWLNKSECRN 61
Query: 609 KMSTN----VRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASDMQEAGGIPNSNQVSN 664
T + YY +++A S ++ + + + Q
Sbjct: 62 INRTYCDLSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEK 121
Query: 665 TMILYVK 671
++ + +
Sbjct: 122 SISVVLT 128
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 80.9 bits (200), Expect = 2e-18
Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 4/113 (3%)
Query: 535 ESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSD 594
S S + P P L + P+ + ++WQ P+ + GY++ Y
Sbjct: 2 SSGSSGSHDSRLTAGVP-DTPTRLVFSAL--GPTSLRVSWQEPRC-ERPLQGYSVEYQLL 57
Query: 595 PNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTA 647
+ + S V L P Y F+++A++ G V +
Sbjct: 58 NGGELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVITIES 110
Score = 80.5 bits (199), Expect = 2e-18
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 4/103 (3%)
Query: 55 TLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNAT--ARVE 112
+P P + +GP S+ + W P + Y V Y+ N A+
Sbjct: 16 GVPDTPTRLVFSALGPTSLRVSWQEP-RCERPLQGYSVEYQLLNGGELHRLNIPNPAQTS 74
Query: 113 AIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPS 155
+++ L PN SY FRV A + G G + E + PS
Sbjct: 75 VVVEDLLPNHSYVFRVRAQSQEGWGREREG-VITIESQVSGPS 116
Score = 79.8 bits (197), Expect = 4e-18
Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 8/122 (6%)
Query: 135 GAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEE 194
G+ +S + + VP P + +G +SL V+W++P ++ Y++ Y
Sbjct: 1 GSSGSSGSHDSRL-TAG-VPDTPTRLVFSALGPTSLRVSWQEPR-CERPLQGYSVEYQLL 57
Query: 195 DTSVERHVVTP---QLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEP 251
+ + P Q S + L Y V A + G G + V T+ + S P
Sbjct: 58 NGGELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREG--VITIESQVSGP 115
Query: 252 PA 253
+
Sbjct: 116 SS 117
Score = 70.1 bits (172), Expect = 1e-14
Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 12/107 (11%)
Query: 231 GAGTTSQELSVQTLSDKPSEPP--------ANSITVRWQPPSRRGQNGIITGYKLRYKKK 282
G+ +S + + P P S+ V WQ P + GY + Y+
Sbjct: 1 GSSGSSGSHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPR---CERPLQGYSVEYQLL 57
Query: 283 DVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATD 329
+ + + V+ L + +Y ++ A + G G +
Sbjct: 58 NGGELHRLNIPNPAQTS-VVVEDLLPNHSYVFRVRAQSQEGWGRERE 103
Score = 63.2 bits (154), Expect = 3e-12
Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 10/125 (8%)
Query: 323 GSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLG 382
GS ++ + VPD P L GP+S+ VSW P + ++G+++
Sbjct: 1 GSSGSSGSHDSRL------TAGVPDTPTRLVFSALGPTSLRVSWQEPRCERP-LQGYSVE 53
Query: 383 W-GKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEP- 440
+ + I + Q S + L PN YV +RA ++ G G ++ + ++
Sbjct: 54 YQLLNGGELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVITIESQVS 113
Query: 441 -PPQA 444
P
Sbjct: 114 GPSSG 118
Score = 47.4 bits (113), Expect = 9e-07
Identities = 30/131 (22%), Positives = 43/131 (32%), Gaps = 14/131 (10%)
Query: 425 GDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEG 484
G P P L L P S+R+SW P +
Sbjct: 1 GSSGSSGSHDSRLTAGVPD------TPTRLVFSALGPTSLRVSW---QEP----RCERPL 47
Query: 485 RHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSM-IVL 543
+ Y V Y L G R N TSV + DL P+ Y F V+ + ++
Sbjct: 48 QGYSVEYQLLNGGELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVIT 107
Query: 544 NTTQEAAPASA 554
+Q + P+S
Sbjct: 108 IESQVSGPSSG 118
>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 117
Score = 80.3 bits (198), Expect = 3e-18
Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 13/117 (11%)
Query: 231 GAGTTSQELSVQTLSDKPSEPPAN--------SITVRWQPPSRRGQNGIITGYKLRYKKK 282
G+ +S ++V T PS+PP N + + W+ +TGYK+ Y+
Sbjct: 1 GSSGSSGTVNVTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTS 60
Query: 283 DVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQD 339
++ + + T + L Y I++ A G G +++ +
Sbjct: 61 S--QNNVQVLNTN---KTSAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRITSS 112
Score = 67.6 bits (165), Expect = 7e-14
Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 10/123 (8%)
Query: 535 ESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPP--KSANGQISGYTILYS 592
S S V TT++ P+ P + V + V LNW+ +++GY + Y
Sbjct: 2 SSGSSGTVNVTTKKTPPSQPPGN---VVWNATDTKVLLNWEQVKAMENESEVTGYKVFYR 58
Query: 593 SDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVT-WTTASDMQ 651
+ + + + ++ L Y ++KA G S + S
Sbjct: 59 TSSQNNVQVLNT----NKTSAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRITSSGP 114
Query: 652 EAG 654
+G
Sbjct: 115 SSG 117
Score = 65.6 bits (160), Expect = 3e-13
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 135 GAGLASSALPVKTEPEDHVPS-PPLNVNIPVVGTSSLLVTWEKPTVT--NGEIKHYTLYY 191
G+ +S + V T+ PS PP NV + +L+ WE+ E+ Y ++Y
Sbjct: 1 GSSGSSGTVNVTTKKT--PPSQPPGNVVWNATD-TKVLLNWEQVKAMENESEVTGYKVFY 57
Query: 192 LEEDTSVERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSD 246
+ + + T + S EL L Y I V A G GT+S+++ + ++
Sbjct: 58 RTSSQNNVQVLNTNKTSAELV-LPIKEDYIIEVKATTDGGDGTSSEQIRIPRITS 111
Score = 61.0 bits (148), Expect = 2e-11
Identities = 20/101 (19%), Positives = 27/101 (26%), Gaps = 5/101 (4%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPP--TLPRGEILVYCVLYKREGSERERAYNATARVEAI 114
PS P V L W E+ Y V Y+ + N +
Sbjct: 18 PSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLNTNK--TSA 75
Query: 115 IQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPS 155
L Y V A G G +S + + PS
Sbjct: 76 ELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRITSS-GPS 115
Score = 51.0 bits (122), Expect = 5e-08
Identities = 21/108 (19%), Positives = 41/108 (37%), Gaps = 11/108 (10%)
Query: 323 GSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSI--MVRGFT 380
GS ++ + T T P P + ++++W V G+
Sbjct: 1 GSSGSSGTVNVTTKK------TPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYK 54
Query: 381 LGWGKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGP 428
+ + + Q+L+ + S E+ L DY+I ++A + GDG
Sbjct: 55 VFYRTS--SQNNVQVLNTNKTSAELV-LPIKEDYIIEVKATTDGGDGT 99
>2crm_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 80.2 bits (198), Expect = 3e-18
Identities = 29/113 (25%), Positives = 42/113 (37%), Gaps = 4/113 (3%)
Query: 535 ESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQ-ISGYTILYSS 593
S S +V TT P P +V K S + W PPK G I+ Y + +
Sbjct: 2 SSGSSGVVEFTTCPDKP-GIPVKPSVKGKIHSHS-FKITWDPPKDNGGATINKYVVEMAE 59
Query: 594 DPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTT 646
N ++W E G L PG Y ++ + G S S ++ T
Sbjct: 60 GSNGNKW-EMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQT 111
Score = 67.1 bits (164), Expect = 1e-13
Identities = 27/108 (25%), Positives = 36/108 (33%), Gaps = 8/108 (7%)
Query: 54 LTLPSAPQSVSAI-MVGPRSVALRWLPPTLPRG-EILVYCVLYKREGSER--ERAYNATA 109
P P S + S + W PP G I Y V + E Y+
Sbjct: 15 PDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGAT 74
Query: 110 RVEAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPP 157
R E + L+P Y RV + G S +L V+T V P
Sbjct: 75 R-EHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTPA---VSGPS 118
Score = 61.7 bits (150), Expect = 9e-12
Identities = 21/114 (18%), Positives = 43/114 (37%), Gaps = 12/114 (10%)
Query: 231 GAGTTSQELSVQTLSDKPSEPP---------ANSITVRWQPPSRRGQNGIITGYKLRYKK 281
G+ +S + T DKP P ++S + W PP G I Y +
Sbjct: 1 GSSGSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNG-GATINKYVVEMA- 58
Query: 282 KDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAET 335
+ + +G R ++ LN Y+++++ ++ G ++ +T
Sbjct: 59 -EGSNGNKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQT 111
Score = 55.9 bits (135), Expect = 1e-09
Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 10/123 (8%)
Query: 135 GAGLASSALPVKTEPEDHVPSPPLN-VNIPVVGTSSLLVTWEKPTVTNG-EIKHYTLYYL 192
G+ +S + T P+ P P+ + + S +TW+ P G I Y +
Sbjct: 1 GSSGSSGVVEFTTCPD--KPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMA 58
Query: 193 EEDTSVERHVV--TPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSE 250
E + ++ + L+ Y + V + G S+ L VQT P+
Sbjct: 59 EGSNGNKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQT----PAV 114
Query: 251 PPA 253
Sbjct: 115 SGP 117
Score = 45.1 bits (107), Expect = 5e-06
Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 14/111 (12%)
Query: 344 TVPDIPASLKARPGGPS--------SIIVSWTPPADQ-SIMVRGFTLGWGKGVPDEFVKQ 394
T PD P P PS S ++W PP D + + + +G +
Sbjct: 13 TCPDKPGI----PVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEM 68
Query: 395 ILDVKQRSDEITGLEPNSDYVISLRAFNEMGDG-PQKYESLRTRNEPPPQA 444
I R L P Y + + ++ G + ++T P +
Sbjct: 69 IYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTPAVSGPSS 119
Score = 37.4 bits (87), Expect = 0.003
Identities = 23/131 (17%), Positives = 42/131 (32%), Gaps = 13/131 (9%)
Query: 425 GDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEG 484
G T P P +K ++ +S +I+W P G
Sbjct: 1 GSSGSSGVVEFTTCPDKPGIPVKPS----VKGKI-HSHSFKITW---DPPKD--NGGATI 50
Query: 485 RHYLVRYTHLLGASNPRYKYINAN-ITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVL 543
Y+V G++ +++ I + + L P Y V + +S S +L
Sbjct: 51 NKYVVEMAE--GSNGNKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLL 108
Query: 544 NTTQEAAPASA 554
T + S+
Sbjct: 109 VQTPAVSGPSS 119
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91,
TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 78.3 bits (193), Expect = 1e-17
Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 4/106 (3%)
Query: 545 TTQEAAPA-SAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEE 603
++ + P + P + S L+W+ P + GY + D N Q+ E
Sbjct: 2 SSGSSGPVPATPILQLEECCTHNNS-ATLSWKQPPLSTVPADGYILELD-DGNGGQF-RE 58
Query: 604 SVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649
VG + V GL Y ++KA N G SPYS T+ T+
Sbjct: 59 VYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEG 104
Score = 71.7 bits (176), Expect = 2e-15
Identities = 24/104 (23%), Positives = 35/104 (33%), Gaps = 5/104 (4%)
Query: 55 TLPSAPQS-VSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEA 113
+P+ P + S L W P L Y + + R
Sbjct: 8 PVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFREVYVGKETMC 67
Query: 114 IIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPP 157
+ GLH N++Y RV A+N G S L ++T S P
Sbjct: 68 TVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSE----GSGP 107
Score = 70.9 bits (174), Expect = 4e-15
Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 5/104 (4%)
Query: 153 VPSPP-LNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVT-PQLSYE 210
VP+ P L + +S ++W++P ++ Y L + + R V +
Sbjct: 9 VPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFREVYVGKETMCT 68
Query: 211 LTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPAN 254
+ GL + Y+ V A N G S+ L +QT P++
Sbjct: 69 VDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQT---SEGSGPSS 109
Score = 58.2 bits (141), Expect = 1e-10
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Query: 344 TVPDIPAS-LKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRS 402
VP P L+ +S +SW P ++ G+ L G +F +++ K+
Sbjct: 8 PVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQF-REVYVGKETM 66
Query: 403 DEITGLEPNSDYVISLRAFNEMGDGPQ-KYESLRTRNEPPPQA 444
+ GL NS Y ++AFN+ G P K L+T P +
Sbjct: 67 CTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGSGPSS 109
Score = 55.9 bits (135), Expect = 7e-10
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 5/82 (6%)
Query: 254 NSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQ 313
NS T+ W+ P GY L + G + + GL+ ++TY
Sbjct: 25 NSATLSWKQPP--LSTVPADGYILELDDGN---GGQFREVYVGKETMCTVDGLHFNSTYN 79
Query: 314 IKLWAMNVNGSGPATDWFSAET 335
++ A N G P + +T
Sbjct: 80 ARVKAFNKTGVSPYSKTLVLQT 101
Score = 46.7 bits (111), Expect = 2e-06
Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 10/114 (8%)
Query: 441 PPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNP 500
P P + L+ S +SW P Y++ G
Sbjct: 6 SGPVPAT--PILQLEECCTHNNSATLSW---KQPPL---STVPADGYILELDD--GNGGQ 55
Query: 501 RYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASA 554
+ T ++ L ++ Y VK S +S ++ T E + S+
Sbjct: 56 FREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGSGPSS 109
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 107
Score = 77.8 bits (192), Expect = 1e-17
Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 5/102 (4%)
Query: 545 TTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEES 604
++ + P P T++ + L W PPK G++ GY + Y + +
Sbjct: 2 SSGSSGP-GRP---TMMISTTAMNTALLQWHPPKELPGELLGYRLQYCRA-DEARPNTID 56
Query: 605 VVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTT 646
D V GL G Y F++ A+N AG T
Sbjct: 57 FGKDDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRTP 98
Score = 75.1 bits (185), Expect = 1e-16
Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 6/109 (5%)
Query: 147 TEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTP- 205
+ P P + I ++ L+ W P GE+ Y L Y D + +
Sbjct: 2 SSGSS-GPGRP-TMMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEARPNTIDFGK 59
Query: 206 -QLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPA 253
+ +TGL T Y + A N G G ++ ++T D P +
Sbjct: 60 DDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFEK-EIRTPEDLSG-PSS 106
Score = 74.4 bits (183), Expect = 2e-16
Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 5/106 (4%)
Query: 53 TLTLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARV- 111
+ P P ++ + L+W PP GE+L Y + Y R R +
Sbjct: 4 GSSGPGRP-TMMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEARPNTIDFGKDDQ 62
Query: 112 EAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPP 157
+ GLH T+Y FR+ A N G G E + P
Sbjct: 63 HFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRTPED---LSGPS 105
Score = 70.1 bits (172), Expect = 6e-15
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 11/94 (11%)
Query: 243 TLSDKPSEPP-------ANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTA 295
+ S P P N+ ++W PP G + GY+L+Y + D + + T+
Sbjct: 3 SGSSGPGRPTMMISTTAMNTALLQWHPPKEL--PGELLGYRLQYCRAD--EARPNTIDFG 58
Query: 296 GDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATD 329
D + + +TGL+K TTY +L A N G G +
Sbjct: 59 KDDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFE 92
Score = 61.7 bits (150), Expect = 6e-12
Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 1/98 (1%)
Query: 344 TVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSD 403
+ P P ++ ++ ++ W PP + + G+ L + + +
Sbjct: 6 SGPGRP-TMMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEARPNTIDFGKDDQHF 64
Query: 404 EITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPP 441
+TGL + Y+ L A N G G + + +RT +
Sbjct: 65 TVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRTPEDLS 102
Score = 40.8 bits (96), Expect = 1e-04
Identities = 16/117 (13%), Positives = 34/117 (29%), Gaps = 14/117 (11%)
Query: 438 NEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGA 497
P P ++I + + + W P ++ E Y ++Y
Sbjct: 4 GSSGPGRPTMMIS-------TTAMNTALLQW---HPP---KELPGELLGYRLQY-CRADE 49
Query: 498 SNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASA 554
+ P + + L T Y F + E + T ++ + S+
Sbjct: 50 ARPNTIDFGKDDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRTPEDLSGPSS 106
>1x5x_A Fibronectin type-III domain containing protein 3A; structural
genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 109
Score = 77.4 bits (191), Expect = 2e-17
Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 5/106 (4%)
Query: 545 TTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQ-ISGYTILYSSDPNTDQWIEE 603
++ + P S P + ++L W P Y + + + +
Sbjct: 2 SSGSSGP-SMPASPVLTKAGITW--LSLQWSKPSGTPSDEGISYILEME-EETSGYGFKP 57
Query: 604 SVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649
G+ ++ V+ L Y FK+ A NS G S S V +TT D
Sbjct: 58 KYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPD 103
Score = 72.4 bits (178), Expect = 1e-15
Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 5/105 (4%)
Query: 55 TLPSAPQSVSAIMVGPRSVALRWLPPTLPRG-EILVYCVLYKREGSERERAYNATAR-VE 112
+ PS P S G ++L+W P+ E + Y + + E S +
Sbjct: 6 SGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLA 65
Query: 113 AIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPP 157
++ L +T Y F+V+AYN+ G S + T P+ P
Sbjct: 66 YTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPD---SGPS 107
Score = 65.8 bits (161), Expect = 3e-13
Identities = 26/102 (25%), Positives = 38/102 (37%), Gaps = 3/102 (2%)
Query: 153 VPSPPLNVNIPVVGTSSLLVTWEKPTVTNG-EIKHYTLYYLEEDTSVERHVVTP--QLSY 209
PS P + + G + L + W KP+ T E Y L EE + L+Y
Sbjct: 7 GPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAY 66
Query: 210 ELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEP 251
+ L T Y V+A+N G S+ + T D
Sbjct: 67 TVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDSGPSS 108
Score = 50.0 bits (120), Expect = 8e-08
Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 1/103 (0%)
Query: 344 TVPDIPASLKARPGGPSSIIVSWTPPA-DQSIMVRGFTLGWGKGVPDEFVKQILDVKQRS 402
+ P +PAS G + + + W+ P+ S + L + K D + +
Sbjct: 6 SGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLA 65
Query: 403 DEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQAP 445
+ L ++ Y + A+N G T +
Sbjct: 66 YTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDSGPSS 108
Score = 49.6 bits (119), Expect = 1e-07
Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 11/92 (11%)
Query: 243 TLSDKPSEPPA--------NSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTT 294
+ S PS P + ++++W PS + Y L +++ G
Sbjct: 3 SGSSGPSMPASPVLTKAGITWLSLQWSKPSGTP-SDEGISYILEMEEET--SGYGFKPKY 59
Query: 295 AGDRRLYVITGLNKSTTYQIKLWAMNVNGSGP 326
G+ Y + L +ST Y+ K+ A N G
Sbjct: 60 DGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSN 91
Score = 36.2 bits (84), Expect = 0.005
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 510 TSVQINDLRPSTQYEFTVKVVRAKKESEWSMIV-LNTTQEAAPASA 554
+ + +LR ST+Y+F V ++ +S S +V T ++ P+S
Sbjct: 64 LAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDSGPSSG 109
>1x3d_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 118
Score = 77.4 bits (191), Expect = 2e-17
Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 4/113 (3%)
Query: 535 ESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSD 594
S S + TT P P + ++ + + L W+ P +I + + +
Sbjct: 2 SSGSSGAEIFTTLSCEP-DIPNPPRIANRTKN--SLTLQWKAPSDNGSKIQNFVLEWDEG 58
Query: 595 PNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTA 647
++ + +G + + L P F++ ARN G+S +S V + T+
Sbjct: 59 KGNGEFCQC-YMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTS 110
Score = 72.0 bits (177), Expect = 2e-15
Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 5/104 (4%)
Query: 55 TLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKR-EGSERERAYNATARVEA 113
P P S+ L+W P+ +I + + + +G+ ++ +
Sbjct: 16 CEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGEFCQCYMGSQKQF 75
Query: 114 IIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPP 157
I L P FR+ A N G S + T S P
Sbjct: 76 KITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSG----CSGP 115
Score = 62.4 bits (152), Expect = 5e-12
Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 6/121 (4%)
Query: 135 GAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEE 194
G+ +S A T P P I +SL + W+ P+ +I+++ L + E
Sbjct: 1 GSSGSSGAEIFTTLSC--EPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEG 58
Query: 195 DTSVERHVVT--PQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPP 252
+ E Q +++T LS + A N G S+E+ T S P
Sbjct: 59 KGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYT--SGCSGPS 116
Query: 253 A 253
+
Sbjct: 117 S 117
Score = 55.9 bits (135), Expect = 9e-10
Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 1/102 (0%)
Query: 344 TVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSD 403
PDIP + +S+ + W P+D ++ F L W +G + Q Q+
Sbjct: 16 CEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGEFCQCYMGSQKQF 75
Query: 404 EITGLEPNSDYVISLRAFNEMGDG-PQKYESLRTRNEPPPQA 444
+IT L P L A N+ G + T P +
Sbjct: 76 KITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGCSGPSS 117
Score = 52.0 bits (125), Expect = 2e-08
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 231 GAGTTSQELSVQTLSDKPSEPPA--------NSITVRWQPPSRRGQNGIITGYKLRYKKK 282
G+ +S TLS +P P NS+T++W+ PS G I + L + +
Sbjct: 1 GSSGSSGAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSK--IQNFVLEWDEG 58
Query: 283 DVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGP 326
K + G ++ + IT L+ + + +L A N G+
Sbjct: 59 --KGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSG 100
Score = 37.8 bits (88), Expect = 0.002
Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 14/130 (10%)
Query: 425 GDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEG 484
G + T P P + + S+ + W +G +
Sbjct: 1 GSSGSSGAEIFTTLSCEPD------IPNPPRIANRTKNSLTLQW------KAPSDNGSKI 48
Query: 485 RHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIV-L 543
+++++ + G + + + +I L P+ +F + S +S V
Sbjct: 49 QNFVLEWDEGKG-NGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLY 107
Query: 544 NTTQEAAPAS 553
T+ + P+S
Sbjct: 108 YTSGCSGPSS 117
>2crz_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 110
Score = 76.6 bits (189), Expect = 4e-17
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 4/104 (3%)
Query: 545 TTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQ-ISGYTILYSSDPNTDQWIEE 603
++ + P + + + L W PP G IS Y++ S D+ E
Sbjct: 2 SSGSSGPPGPCLPPRLQGRPKAKE-IQLRWGPPLVDGGSPISCYSVEMS-PIEKDEP-RE 58
Query: 604 SVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTA 647
G ++ V L PG+ Y F+++A N G P+S TTA
Sbjct: 59 VYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTA 102
Score = 67.7 bits (166), Expect = 5e-14
Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 6/102 (5%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLPRG-EILVYCVLYKREGSERERAYNATARVEAII 115
P P + + + LRW PP + G I Y V + R + VE +
Sbjct: 11 PCLPPRLQGR-PKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECTV 69
Query: 116 QGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPP 157
L P +Y+FR+ A N +G G S + T P S P
Sbjct: 70 SSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAP----GSGP 107
Score = 56.6 bits (137), Expect = 5e-10
Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 6/105 (5%)
Query: 153 VPSPPLNVNIP-VVGTSSLLVTWEKPTVTNG-EIKHYTLYYLEEDTSVERHVVT-PQLSY 209
P P L + + + W P V G I Y++ + R V ++
Sbjct: 8 PPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVEC 67
Query: 210 ELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPAN 254
++ L YS + A N G G S++ + T P P++
Sbjct: 68 TVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTA---PGSGPSS 109
Score = 48.9 bits (117), Expect = 2e-07
Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 4/88 (4%)
Query: 248 PSEPPANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLN 307
P A I +RW PP G I+ Y + + G ++ L
Sbjct: 18 QGRPKAKEIQLRWGPPLVDG-GSPISCYSVEMSPIE---KDEPREVYQGSEVECTVSSLL 73
Query: 308 KSTTYQIKLWAMNVNGSGPATDWFSAET 335
TY +L A N G GP ++ T
Sbjct: 74 PGKTYSFRLRAANKMGFGPFSEKCDITT 101
Score = 41.9 bits (99), Expect = 7e-05
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Query: 341 GEFTVPDIPASLKARPG-GPSSIIVSWTPPA-DQSIMVRGFTLGWGKGVPDEFVKQILDV 398
G P + + I + W PP D + +++ DE +++
Sbjct: 4 GSSGPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEP-REVYQG 62
Query: 399 KQRSDEITGLEPNSDYVISLRAFNEMGDGP 428
+ ++ L P Y LRA N+MG GP
Sbjct: 63 SEVECTVSSLLPGKTYSFRLRAANKMGFGP 92
Score = 33.9 bits (78), Expect = 0.044
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 510 TSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASA 554
++ L P Y F ++ +S TT + S+
Sbjct: 65 VECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGSGPSS 109
>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic
cytokine, cytokine receptor class 1, complex
(cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A
Length = 227
Score = 79.8 bits (196), Expect = 5e-17
Identities = 32/205 (15%), Positives = 57/205 (27%), Gaps = 20/205 (9%)
Query: 144 PVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVV 203
+++ P + L+ WE+ Y+ Y ED + +
Sbjct: 11 KFESKAALLAARGPEELLCFTERLEDLVCFWEEAASAGVGPGQYSFSYQLEDEPWKLCRL 70
Query: 204 TPQLSYELTG----------LSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPA 253
+ S F + V A +G ++ L D P A
Sbjct: 71 HQAPTARGAVRFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIHINEVVLLDAPVGLVA 130
Query: 254 ------NSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLN 307
+ +RW PP I Y++ + V R V++ L
Sbjct: 131 RLADESGHVVLRWLPPPETPMTSHIR-YEVDVSAGQGAGSV-QRVEILEGRTECVLSNLR 188
Query: 308 KSTTYQIKLWA--MNVNGSGPATDW 330
T Y + A + G ++W
Sbjct: 189 GRTRYTFAVRARMAEPSFGGFWSEW 213
Score = 67.4 bits (164), Expect = 8e-13
Identities = 27/159 (16%), Positives = 44/159 (27%), Gaps = 11/159 (6%)
Query: 498 SNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRD 557
P + S+ D E V + + AP
Sbjct: 72 QAPTARGAVRFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIHINEVVL----LDAPVG 127
Query: 558 LTVVSKEGDPSLVNLNWQPPKSANGQIS-GYTILYSSDPNTDQWIEESVVGDKMSTNVRG 616
L + V L W PP Y + S+ ++ + +
Sbjct: 128 LVARL-ADESGHVVLRWLPPPETPMTSHIRYEVDVSAGQGAGSVQRVEILEGRTECVLSN 186
Query: 617 LEPGRIYYFKIKARNSAGS-----SPYSSTVTWTTASDM 650
L Y F ++AR + S S +S V+ T SD+
Sbjct: 187 LRGRTRYTFAVRARMAEPSFGGFWSEWSEPVSLLTPSDL 225
Score = 63.2 bits (153), Expect = 2e-11
Identities = 30/214 (14%), Positives = 57/214 (26%), Gaps = 24/214 (11%)
Query: 52 ETLTLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSE-------RERA 104
L P+ + + W Y Y+ E +
Sbjct: 16 AALLAARGPEELLCFTERLEDLVCFWEEAASAGVGPGQYSFSYQLEDEPWKLCRLHQAPT 75
Query: 105 YNATARVEAIIQG--LHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNI 162
R + RV A + GA + + + P+ +
Sbjct: 76 ARGAVRFWCSLPTADTSSFVPLELRVTAAS--GAPRYHRVIHINE---VVLLDAPVGLVA 130
Query: 163 PVVGTSS-LLVTWEKP--TVTNGEIKHYTLYYLEEDTSVERHVVTP--QLSYELTGLSHF 217
+ S +++ W P T I++ + + V + L+ L
Sbjct: 131 RLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGQGAGSVQRVEILEGRTECVLSNLRGR 190
Query: 218 TLYSIWVVAHNGNGAGTT-----SQELSVQTLSD 246
T Y+ V A + S+ +S+ T SD
Sbjct: 191 TRYTFAVRARMAEPSFGGFWSEWSEPVSLLTPSD 224
Score = 52.0 bits (124), Expect = 2e-07
Identities = 29/224 (12%), Positives = 56/224 (25%), Gaps = 33/224 (14%)
Query: 345 VPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGW---GKGVPDEFVKQILDVKQR 401
P L ++ W A + ++ + + + Q +
Sbjct: 20 AARGPEELLCFTERLEDLVCFWEEAASAGVGPGQYSFSYQLEDEPWKLCRLHQAPTARGA 79
Query: 402 SDEI-----TGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPPMGLKS 456
+ + A + + P +
Sbjct: 80 VRFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIHINEVVLLDAPVGLVARLAD----- 134
Query: 457 EVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANITSVQIND 516
+ + W+ Y V + GA + + I T +++
Sbjct: 135 ---ESGHVVLRWLPPPETPMTSHI-----RYEVDVSAGQGAGSVQRVEILEGRTECVLSN 186
Query: 517 LRPSTQYEFTVKVVRAKKE--------SEWS-MIVLNTTQEAAP 551
LR T+Y F VRA+ SEWS + L T + P
Sbjct: 187 LRGRTRYTFA---VRARMAEPSFGGFWSEWSEPVSLLTPSDLDP 227
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III
repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 76.3 bits (188), Expect = 5e-17
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 7/102 (6%)
Query: 54 LTLPSAPQSVSAIMVGPRSVALRWLPPTLPRG-EILVYCVLYKREGSERERAYNATARV- 111
+ PS+P + + +++ P G IL Y ++ G E + A+
Sbjct: 4 MDTPSSPSID-QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEA 62
Query: 112 ----EAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEP 149
I GL P T+Y R+ A N G G S+A KT+P
Sbjct: 63 SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQP 104
Score = 72.4 bits (178), Expect = 1e-15
Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 8/105 (7%)
Query: 546 TQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANG-QISGYTILYSSDPNTD---QWI 601
+ P S+P V E S + + P++ G I Y + + +W
Sbjct: 2 SHMDTP-SSPSIDQV---EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWY 57
Query: 602 EESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTT 646
+ + + GL+P Y ++ A N G S+ + T
Sbjct: 58 DAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 102
Score = 62.8 bits (153), Expect = 3e-12
Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 8/99 (8%)
Query: 153 VPSPPLNVNIPVVGTSSLLVTWEKPTVTNG-EIKHYTLYYLEEDTS------VERHVVTP 205
PS P + +S+ V +++P T G I Y + + +
Sbjct: 6 TPSSPSIDQVEP-YSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASM 64
Query: 206 QLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTL 244
+ + GL T Y++ + A NG G G S +T
Sbjct: 65 EGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 103
Score = 60.1 bits (146), Expect = 2e-11
Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 10/99 (10%)
Query: 246 DKPSEPP-------ANSITVRWQPPSRRGQNGIITGYKLRYKKKDVK--KDKGETVTTAG 296
D PS P +++ V++ P G I YK ++ + K A
Sbjct: 5 DTPSSPSIDQVEPYSSTAQVQFDEPEATG-GVPILKYKAEWRAVGEEVWHSKWYDAKEAS 63
Query: 297 DRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAET 335
+ I GL TTY ++L A+N G G + +T
Sbjct: 64 MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 102
Score = 49.7 bits (119), Expect = 1e-07
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 6/92 (6%)
Query: 342 EFTVPDIPASLKARPGGPSSIIVSWTPPA-DQSIMVRGFTLGWGKGVPDEFVKQILDVKQ 400
P P+ + P S+ V + P + + + W + + + D K+
Sbjct: 3 HMDTPSSPSIDQVEPYS-STAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKE 61
Query: 401 RSDE----ITGLEPNSDYVISLRAFNEMGDGP 428
S E I GL+P + Y + L A N G G
Sbjct: 62 ASMEGIVTIVGLKPETTYAVRLAALNGKGLGE 93
Score = 30.1 bits (68), Expect = 0.88
Identities = 11/38 (28%), Positives = 14/38 (36%)
Query: 510 TSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQ 547
V I L+P T Y + + K E S TQ
Sbjct: 66 GIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 103
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 80.2 bits (198), Expect = 1e-16
Identities = 28/108 (25%), Positives = 37/108 (34%), Gaps = 1/108 (0%)
Query: 56 LPSAPQSVSAIMVGPRSVALRWLPPTLPRG-EILVYCVLYKREGSERERAYNATARVEAI 114
+P P+ V V SV L W P G +I Y V +ER
Sbjct: 198 VPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQARETRYT 257
Query: 115 IQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNI 162
+ L TSY FRV+A N G S ED + + +
Sbjct: 258 VINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKTRAMNYDEEV 305
Score = 73.6 bits (181), Expect = 2e-14
Identities = 31/164 (18%), Positives = 50/164 (30%), Gaps = 7/164 (4%)
Query: 97 EGSERERAYNATARVEAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSP 156
+ + G+ + + V A N G + L V VP P
Sbjct: 147 NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD-----VPDP 201
Query: 157 PLNVNIPVVGTSSLLVTWEKPTVTNG-EIKHYTLYYLEEDTSVERHVVT-PQLSYELTGL 214
P V + V S+ +TW +P G +I +Y + V + Y + L
Sbjct: 202 PRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQARETRYTVINL 261
Query: 215 SHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPANSITV 258
T Y V+A N G S+ + + V
Sbjct: 262 FGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKTRAMNYDEEV 305
Score = 71.7 bits (176), Expect = 1e-13
Identities = 45/237 (18%), Positives = 87/237 (36%), Gaps = 38/237 (16%)
Query: 114 IIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSP-------------PLNV 160
II + + + ++V A N G+ +++L V+ + H+P +++
Sbjct: 65 IIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSI 124
Query: 161 NIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHV---VTPQLSYELTGLSHF 217
IP G ++TW+K ++ ++ + + V T +
Sbjct: 125 KIPFSGKPDPVITWQK----GQDL-------IDNNGHYQVIVTRSFTSLVFPNGVERKDA 173
Query: 218 TLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPA-----NSITVRWQPPSRRGQNGII 272
Y + A N G + EL V + D P +S+ + W P+ G I
Sbjct: 174 GFYVV--CAKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDG-GSKI 230
Query: 273 TGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATD 329
T Y + ++ V A + R Y + L T+YQ ++ A N G ++
Sbjct: 231 TNYIVEKCATT--AERWLRVGQARETR-YTVINLFGKTSYQFRVIAENKFGLSKPSE 284
Score = 67.1 bits (164), Expect = 4e-12
Identities = 28/153 (18%), Positives = 48/153 (31%), Gaps = 9/153 (5%)
Query: 498 SNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRD 557
+ + + + V N + + V + ++ + P PR
Sbjct: 149 GHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVEL---DVADVP-DPPRG 204
Query: 558 LTVVSKEGDPSLVNLNWQPPKSANGQ-ISGYTILYSSDPNTDQWIEESVVGDKMSTNVRG 616
+ V D VNL W P S G I+ Y + ++W+ + V
Sbjct: 205 VKVSDVSRD--SVNLTWTEPASDGGSKITNYIVEKC-ATTAERWLRVGQARE-TRYTVIN 260
Query: 617 LEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649
L Y F++ A N G S S T +
Sbjct: 261 LFGKTSYQFRVIAENKFGLSKPSEPSEPTITKE 293
Score = 47.8 bits (114), Expect = 6e-06
Identities = 42/242 (17%), Positives = 77/242 (31%), Gaps = 37/242 (15%)
Query: 224 VVAHNGNGAGTTSQELSVQTLSDKPSEPPANSITVRWQPPS----RRGQNGII----TGY 275
V A N G+ + + L V+ P + + RG+ I +G
Sbjct: 79 VRATNQGGSVSGTASLEVE-------VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGK 131
Query: 276 ---KLRYKKKDVK---KDKGETVTTAGDRRLYVITGLNK--STTYQIKLWAMNVNGSGPA 327
+ ++K + + T L G+ + + Y + A N G
Sbjct: 132 PDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVC--AKNRFGI--- 186
Query: 328 TDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPA-DQSIMVRGFTLGWGKG 386
D + E D VPD P +K S+ ++WT PA D + + +
Sbjct: 187 -DQKTVELDVAD-----VPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIV-EKCA 239
Query: 387 VPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDG-PQKYESLRTRNEPPPQAP 445
E ++ ++ + L + Y + A N+ G P + E +A
Sbjct: 240 TTAERWLRVGQARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKTRAM 299
Query: 446 KV 447
Sbjct: 300 NY 301
Score = 37.0 bits (86), Expect = 0.018
Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 14/115 (12%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINAN- 508
PP G+K +S S+ ++W T P G + +Y+V + +++
Sbjct: 201 PPRGVKVSDVSRDSVNLTW---TEPAS--DGGSKITNYIVEK-----CATTAERWLRVGQ 250
Query: 509 --ITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIV-LNTTQEAAPASAPRDLTV 560
T + +L T Y+F V S+ S T+E + D V
Sbjct: 251 ARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKTRAMNYDEEV 305
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1,
NCAM-120, CD56 antigen, membra protein, glycoprotein,
structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo
sapiens}
Length = 122
Score = 75.2 bits (185), Expect = 2e-16
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 8/109 (7%)
Query: 55 TLPSAPQSVSAIMVGPRSVALRWLPPTLPRG-EILVYCVLYKREGSER-----ERAYNAT 108
+ PS+P + + +++ P G IL Y ++ G E A A+
Sbjct: 6 SGPSSPSIDQ-VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 64
Query: 109 ARVEAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPP 157
I GL P T+Y R+ A N G G S+A KT+P PS P
Sbjct: 65 MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVR-EPSAP 112
Score = 70.6 bits (173), Expect = 7e-15
Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 8/106 (7%)
Query: 545 TTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANG-QISGYTILY---SSDPNTDQW 600
++ + P S+P V E S + + P++ G I Y + + +W
Sbjct: 2 SSGSSGP-SSPSIDQV---EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKW 57
Query: 601 IEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTT 646
+ + + GL+P Y ++ A N G S+ + T
Sbjct: 58 YDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 103
Score = 62.1 bits (151), Expect = 6e-12
Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 9/119 (7%)
Query: 147 TEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNG-EIKHYTLYYLEEDTS------VE 199
+ PS P + +S+ V +++P T G I Y + +
Sbjct: 2 SSGSS-GPSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYD 59
Query: 200 RHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPANSITV 258
+ + + GL T Y++ + A NG G G S +T + P +
Sbjct: 60 AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGSG 118
Score = 55.9 bits (135), Expect = 1e-09
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 250 EPPANSITVRWQPPSRRGQNGIITGYKLRYKKKDVK--KDKGETVTTAGDRRLYVITGLN 307
EP +++ V++ P G I YK ++ + K A + I GL
Sbjct: 17 EPYSSTAQVQFDEPEATG-GVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLK 75
Query: 308 KSTTYQIKLWAMNVNGSGPATDWFSAET 335
TTY ++L A+N G G + +T
Sbjct: 76 PETTYAVRLAALNGKGLGEISAASEFKT 103
Score = 50.9 bits (122), Expect = 6e-08
Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 7/115 (6%)
Query: 343 FTVPDIPASLKARPGGPSSIIVSWTPPA-DQSIMVRGFTLGWGKGVPDEFVKQILDVKQR 401
+ P P+ + P S+ V + P + + + W + + + D K+
Sbjct: 5 SSGPSSPSIDQVEPYS-STAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEA 63
Query: 402 SDE----ITGLEPNSDYVISLRAFNEMGDG-PQKYESLRTRNEPPPQAPKVLIPP 451
S E I GL+P + Y + L A N G G +T+ P APK+
Sbjct: 64 SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGSG 118
Score = 37.8 bits (88), Expect = 0.002
Identities = 15/56 (26%), Positives = 19/56 (33%)
Query: 510 TSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEG 565
V I L+P T Y + + K E S TQ SAP+ G
Sbjct: 67 GIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGSGPSSG 122
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM
related cell adhesion molecule, fibronectin type III
domain, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 127
Score = 75.1 bits (185), Expect = 2e-16
Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 7/115 (6%)
Query: 56 LPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNAT---ARVE 112
+P+ P + +SV L W P I + + Y+ + ++ T
Sbjct: 16 VPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQT 75
Query: 113 AIIQGLHPNTSYTFRVVAYNALGAGLASSA-LPVKTEPEDHVPSPPLNVNIPVVG 166
L P +Y+FRV+A N++G L S A T+ + +P + P G
Sbjct: 76 TAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNPT---SGPSSG 127
Score = 63.2 bits (154), Expect = 4e-12
Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 3/98 (3%)
Query: 553 SAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILY-SSDPNTDQWIEESVVGDKMS 611
+ P DL + + V L+W P N I+ + I Y + W ++ V +
Sbjct: 18 NPPFDLELTDQ--LDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQT 75
Query: 612 TNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649
T L P Y F++ A NS G S S
Sbjct: 76 TAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKA 113
Score = 58.9 bits (143), Expect = 1e-10
Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 6/123 (4%)
Query: 137 GLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDT 196
G + S+ P D VP+PP ++ + S+ ++W N I + + Y +
Sbjct: 1 GSSGSSGPTPAPVYD-VPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMH 59
Query: 197 SVERHV----VTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQE-LSVQTLSDKPSEP 251
V+ + LS + YS V+A N G S+ T + +P +
Sbjct: 60 KPGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKN 119
Query: 252 PAN 254
P +
Sbjct: 120 PTS 122
Score = 53.9 bits (130), Expect = 5e-09
Identities = 16/106 (15%), Positives = 33/106 (31%), Gaps = 7/106 (6%)
Query: 229 GNGAGTTSQELSVQTLSDKPSEPP-----ANSITVRWQPPSRRGQNGIITGYKLRYKKKD 283
G+ + V + + P + S+ + W P IT + + Y+
Sbjct: 1 GSSGSSGPTPAPVYDVPNPPFDLELTDQLDKSVQLSWTPGDDNNSP--ITKFIIEYEDAM 58
Query: 284 VKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATD 329
K T + L+ Y ++ A+N G ++
Sbjct: 59 HKPGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSE 104
Score = 51.2 bits (123), Expect = 5e-08
Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 4/105 (3%)
Query: 345 VPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTL-GWGKGVPDEFVKQILDV-KQRS 402
VP+ P L+ S+ +SWTP D + + F + +V ++
Sbjct: 16 VPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQT 75
Query: 403 DEITGLEPNSDYVISLRAFNEMGDGP--QKYESLRTRNEPPPQAP 445
L P +Y + A N +G + E T+ P + P
Sbjct: 76 TAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNP 120
Score = 34.7 bits (80), Expect = 0.026
Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 8/110 (7%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINA-N 508
PP L+ S+++SW + +++ Y + +
Sbjct: 19 PPFDLELTDQLDKSVQLSWTPG------DDNNSPITKFIIEYEDAMHKPGLWHHQTEVSG 72
Query: 509 ITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLN-TTQEAAPASAPRD 557
+ +L P Y F V V + +S S T+ + P P
Sbjct: 73 TQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNPTS 122
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 106
Score = 73.9 bits (182), Expect = 4e-16
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
Query: 55 TLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERE-RAYNATARVEA 113
+ P P + SV L W + Y + Y+ G+E + + A
Sbjct: 6 SGPKPPIDLVVTETTATSVTLTWDSG--NSEPVTYYGIQYRAAGTEGPFQEVDGVATTRY 63
Query: 114 IIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPS 155
I GL P + Y FRV+A N++G G S A+ +T + PS
Sbjct: 64 SIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQS-GPS 104
Score = 69.6 bits (171), Expect = 1e-14
Identities = 26/105 (24%), Positives = 39/105 (37%), Gaps = 6/105 (5%)
Query: 545 TTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEES 604
++ + P P DL V + V L W + ++ Y I Y T+ +E
Sbjct: 2 SSGSSGP-KPPIDLVVTETT--ATSVTLTWDSG--NSEPVTYYGIQYR-AAGTEGPFQEV 55
Query: 605 VVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649
++ GL P Y F++ A NS G P S V T
Sbjct: 56 DGVATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQ 100
Score = 56.9 bits (138), Expect = 3e-10
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 153 VPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTP--QLSYE 210
P PP+++ + +S+ +TW+ + + +Y + Y T V Y
Sbjct: 7 GPKPPIDLVVTETTATSVTLTWDSGN--SEPVTYYGIQYRAAGTEGPFQEVDGVATTRYS 64
Query: 211 LTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPA 253
+ GLS F+ Y+ V+A N G G S+ + +T + S P +
Sbjct: 65 IGGLSPFSEYAFRVLAVNSIGRGPPSEAVRART--GEQSGPSS 105
Score = 47.3 bits (113), Expect = 8e-07
Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 4/103 (3%)
Query: 344 TVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSD 403
+ P P L +S+ ++W + + + + + + +++ V
Sbjct: 6 SGPKPPIDLVVTETTATSVTLTWDSGNSEPVT--YYGIQYRAAGTEGPFQEVDGVATTRY 63
Query: 404 EITGLEPNSDYVISLRAFNEMGDGP--QKYESLRTRNEPPPQA 444
I GL P S+Y + A N +G GP + + P
Sbjct: 64 SIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQSGPSSG 106
Score = 45.8 bits (109), Expect = 2e-06
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 253 ANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTY 312
A S+T+ W + + +T Y ++Y+ + E A R Y I GL+ + Y
Sbjct: 21 ATSVTLTWDSGN----SEPVTYYGIQYRAAGTEGPFQEVDGVATTR--YSIGGLSPFSEY 74
Query: 313 QIKLWAMNVNGSGPATD 329
++ A+N G GP ++
Sbjct: 75 AFRVLAVNSIGRGPPSE 91
Score = 38.4 bits (90), Expect = 8e-04
Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 10/106 (9%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANI 509
PP+ L + S+ ++W + E +Y ++Y G P +
Sbjct: 10 PPIDLVVTETTATSVTLTWD----SG----NSEPVTYYGIQY-RAAGTEGPFQEVDGVAT 60
Query: 510 TSVQINDLRPSTQYEFTVKVVRAKKESEWSMIV-LNTTQEAAPASA 554
T I L P ++Y F V V + S V T +++ P+S
Sbjct: 61 TRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQSGPSSG 106
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 73.9 bits (182), Expect = 5e-16
Identities = 23/100 (23%), Positives = 35/100 (35%)
Query: 550 APASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDK 609
AP + +NL W P N + Y + S + + SV
Sbjct: 16 QLPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSENNAPWTVLLASVDPKA 75
Query: 610 MSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649
S V+GL P R Y F++ A N G +S + +
Sbjct: 76 TSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPE 115
Score = 71.6 bits (176), Expect = 4e-15
Identities = 29/120 (24%), Positives = 43/120 (35%), Gaps = 9/120 (7%)
Query: 43 STGSIEAINET--LTLPSAPQSVSAIM--VGPRSVALRWLPPTLPRGEILVYCVLYKREG 98
S+GS LP AP+ A + V R++ L W P ++ Y +
Sbjct: 2 SSGSSGRSAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSENN 61
Query: 99 SERERAYNAT--ARVEAIIQGLHPNTSYTFRVVAYNALGAGLASSAL-PVKTEPEDHVPS 155
+ + ++GL P SY FR+ A N +G G S V PS
Sbjct: 62 APWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPES--GPS 119
Score = 52.0 bits (125), Expect = 2e-08
Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 10/103 (9%)
Query: 231 GAGTTSQELSVQTLSDKPSEPPA-------NSITVRWQPPSRRGQNGIITGYKLRYKKKD 283
G+ S L V+ L P P A +I + W P + Y L + +
Sbjct: 4 GSSGRSAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKPFDGNSP--LIRYILEMSENN 61
Query: 284 VKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGP 326
+ GL + +YQ +L A+N G G
Sbjct: 62 APWTVLLASVDPKATS-VTVKGLVPARSYQFRLCAVNDVGKGQ 103
Score = 52.0 bits (125), Expect = 3e-08
Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 6/103 (5%)
Query: 153 VPSPPLNVNIPV--VGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVT---PQL 207
+P P + + V ++ +TW KP N + Y L E + + +
Sbjct: 17 LPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSENNAPWTVLLASVDPKAT 76
Query: 208 SYELTGLSHFTLYSIWVVAHNGNGAGTTSQELS-VQTLSDKPS 249
S + GL Y + A N G G S++ V PS
Sbjct: 77 SVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPESGPS 119
Score = 46.2 bits (110), Expect = 2e-06
Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 5/106 (4%)
Query: 344 TVPDIPASLKARPG--GPSSIIVSWTPPADQSIMVRGFTL-GWGKGVPDEFVKQILDVKQ 400
+P P A +I ++WT P D + + + L P + +D K
Sbjct: 16 QLPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSENNAPWTVLLASVDPKA 75
Query: 401 RSDEITGLEPNSDYVISLRAFNEMGDGP--QKYESLRTRNEPPPQA 444
S + GL P Y L A N++G G + E + P
Sbjct: 76 TSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPESGPSSG 121
Score = 37.3 bits (87), Expect = 0.003
Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 14/115 (12%)
Query: 441 PPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNP 500
P+ P + S V ++ ++W T P Y++ +
Sbjct: 20 APEHPVATL------STV-ERRAINLTW---TKPFD---GNSPLIRYILEMSENNAPWTV 66
Query: 501 RYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLN-TTQEAAPASA 554
++ TSV + L P+ Y+F + V + ++S + E+ P+S
Sbjct: 67 LLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPESGPSSG 121
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine,
hormone-hormone recep complex; 2.00A {Homo sapiens} PDB:
3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B
3ew3_B 3npz_B 1f6f_B 2lfg_A
Length = 210
Score = 75.9 bits (186), Expect = 8e-16
Identities = 42/207 (20%), Positives = 62/207 (29%), Gaps = 18/207 (8%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERER---AYNATARVEA 113
P P+ + W P T G Y + Y REG Y
Sbjct: 4 PGKPEIFKCRSPNKETFTCWWRPGTDG-GLPTNYSLTYHREGETLMHECPDYITGGPNSC 62
Query: 114 II--QGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTS--- 168
Q +Y V A N +G+ S P PPL + + V
Sbjct: 63 HFGKQYTSMWRTYIMMVNATNQMGSS--FSDELYVDVTYIVQPDPPLELAVEVKQPEDRK 120
Query: 169 -SLLVTWEKPTVTNGEIKHYTL-----YYLEEDTSVERHVVTPQLSYELTGLSHFTLYSI 222
L + W PT+ + + +TL E+ E H Q +++ L Y +
Sbjct: 121 PYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFAGQQTEFKILSLHPGQKYLV 180
Query: 223 WVVAHNGNGA-GTTSQELSVQTLSDKP 248
V +G S +Q SD
Sbjct: 181 QVRCKPDHGYWSAWSPATFIQIPSDFT 207
Score = 73.2 bits (179), Expect = 7e-15
Identities = 41/220 (18%), Positives = 65/220 (29%), Gaps = 24/220 (10%)
Query: 441 PPQAPKVLIPPMGLKSEVLSPYSMRISW---IDTTLPDQFQQHGEEGRHYLVRYTHLLGA 497
PP P++ K + + W D LP + R L
Sbjct: 3 PPGKPEIF------KCRSPNKETFTCWWRPGTDGGLPTNY-------SLTYHREGETLMH 49
Query: 498 SNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRD 557
P Y N Y V S + ++ T P P +
Sbjct: 50 ECPDYITGGPNSCHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQP-DPPLE 108
Query: 558 LTVVSK--EGDPSLVNLNWQPPKSANGQISGYTILYS---SDPNTDQWIEESVVGDKMST 612
L V K E + + W PP + + +T+LY +W E G +
Sbjct: 109 LAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEW-EIHFAGQQTEF 167
Query: 613 NVRGLEPGRIYYFKIKARNSAGS-SPYSSTVTWTTASDMQ 651
+ L PG+ Y +++ + G S +S SD
Sbjct: 168 KILSLHPGQKYLVQVRCKPDHGYWSAWSPATFIQIPSDFT 207
Score = 70.1 bits (171), Expect = 9e-14
Identities = 40/215 (18%), Positives = 67/215 (31%), Gaps = 29/215 (13%)
Query: 154 PSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYY----LEEDTSVERHVVTPQLS- 208
P P + W T Y+L Y ++ S
Sbjct: 4 PGKPEIFKCRSPNKETFTCWWRPGTDGGLPTN-YSLTYHREGETLMHECPDYITGGPNSC 62
Query: 209 -YELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPAN------------- 254
+ S + Y + V A N G+ S EL V +PP
Sbjct: 63 HFGKQYTSMWRTYIMMVNATNQMGSS-FSDELYVDVTYIVQPDPPLELAVEVKQPEDRKP 121
Query: 255 SITVRWQPPS--RRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTY 312
+ ++W PP+ Y++R K + + AG + + I L+ Y
Sbjct: 122 YLWIKWSPPTLIDLKTGWFTLLYEIRLKPEK---AAEWEIHFAGQQTEFKILSLHPGQKY 178
Query: 313 QIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPD 347
+++ +G + W S TF Q +FT+ D
Sbjct: 179 LVQVRCKPDHGYW--SAW-SPATFIQIPSDFTMND 210
Score = 55.5 bits (133), Expect = 8e-09
Identities = 37/196 (18%), Positives = 67/196 (34%), Gaps = 27/196 (13%)
Query: 248 PSEPPAN---------SITVRWQPPSRRGQNGIITGYKLRYKK--KDVKKDKGETVTTAG 296
P P + T W+P + G+ T Y L Y + + + + + +T
Sbjct: 3 PPGKPEIFKCRSPNKETFTCWWRPGTD---GGLPTNYSLTYHREGETLMHECPDYITGGP 59
Query: 297 DRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARP 356
+ + + TY + + A N GS ++ D+ PD P L
Sbjct: 60 NSCHFGKQYTSMWRTYIMMVNATNQMGSS------FSDELYVDVTYIVQPDPPLELAVEV 113
Query: 357 GGPS----SIIVSWTPPADQSIMVRGFTLGWG---KGVPDEFVKQILDVKQRSDEITGLE 409
P + + W+PP + FTL + K + +Q +I L
Sbjct: 114 KQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFAGQQTEFKILSLH 173
Query: 410 PNSDYVISLRAFNEMG 425
P Y++ +R + G
Sbjct: 174 PGQKYLVQVRCKPDHG 189
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic
receptor, signal transduction cytokine; HET: NAG; 2.80A
{Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A
1gcf_A
Length = 215
Score = 74.9 bits (183), Expect = 2e-15
Identities = 35/220 (15%), Positives = 60/220 (27%), Gaps = 24/220 (10%)
Query: 441 PPQAPKVLIPPMGLKSEVLSPY--SMRISW---IDTTLPDQFQQHGEEGRHYLVRYTHLL 495
PP +P L S ++ S+ W +T LP F R
Sbjct: 4 PPASPSNL-------SCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGD-- 54
Query: 496 GASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAP 555
N S+ +L V+ SE + L+ P
Sbjct: 55 -TIPDCVAKKRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKL-EPP 112
Query: 556 RDLTVVSK----EGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIE-ESVVGDKM 610
+ P + L+W+P K + + Y W + K
Sbjct: 113 MLQALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSSKD 172
Query: 611 STNVRGLEPGRIYYFKIKARNSAGS---SPYSSTVTWTTA 647
+ GL +Y +++ S+ SP+S +
Sbjct: 173 QFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRPT 212
Score = 70.2 bits (171), Expect = 8e-14
Identities = 31/210 (14%), Positives = 70/210 (33%), Gaps = 26/210 (12%)
Query: 57 PSAPQSVSAIMVG-PRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAI- 114
P++P ++S +M S+ +W P + + R ++ + + A
Sbjct: 5 PASPSNLSCLMHLTTNSLVCQWEPGP-ETHLPTSFILKSFRSRADCQYQGDTIPDCVAKK 63
Query: 115 --------IQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPV-- 164
+ L V A N LG+ + S + PP+ + +
Sbjct: 64 RQNNCSIPRKNLLLYQYMAIWVQAENMLGS--SESPKLCLDPMDVVKLEPPMLQALDIGP 121
Query: 165 ----VGTSSLLVTWEKPTVTNGEIKHYTLYYL----EEDTSVERHVVTPQLSYELTGLSH 216
L ++W+ + + L Y + ++ H+ + + +EL GL
Sbjct: 122 DVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQ 181
Query: 217 FTLYSIWVVAHNGNGAGTT---SQELSVQT 243
+Y++ + + G S L ++
Sbjct: 182 APVYTLQMRCIRSSLPGFWSPWSPGLQLRP 211
Score = 70.2 bits (171), Expect = 9e-14
Identities = 29/220 (13%), Positives = 63/220 (28%), Gaps = 24/220 (10%)
Query: 346 PDIPASLKA-RPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSDE 404
P P++L +S++ W P + + + ++ +
Sbjct: 5 PASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAKKR 64
Query: 405 -------ITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSE 457
L I ++A N +G L + + P + +G
Sbjct: 65 QNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPDVV 124
Query: 458 VLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASN-PRYKYINANITSVQIND 516
P + +SW + +Q +RY L +N ++ ++ ++
Sbjct: 125 SHQPGCLWLSWKPWKPSEYMEQ------ECELRYQPQLKGANWTLVFHLPSSKDQFELCG 178
Query: 517 LRPSTQYEFTVKVVRAKKE------SEWSMIVLNTTQEAA 550
L + Y +R + S WS + A
Sbjct: 179 LHQAPVYTLQ---MRCIRSSLPGFWSPWSPGLQLRPTMKA 215
Score = 68.7 bits (167), Expect = 3e-13
Identities = 32/202 (15%), Positives = 69/202 (34%), Gaps = 28/202 (13%)
Query: 154 PSPPLNVN-IPVVGTSSLLVTWEKPTVTNGEIKHYTLYY---------LEEDTSVERHVV 203
P+ P N++ + + T+SL+ WE T+ + +
Sbjct: 5 PASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAKKR 64
Query: 204 TPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPAN--------- 254
S L + +IWV A N G+ + S +L + + EPP
Sbjct: 65 QNNCSIPRKNLLLYQYMAIWVQAENMLGS-SESPKLCLDPMDVVKLEPPMLQALDIGPDV 123
Query: 255 ------SITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNK 308
+ + W+P + +LRY+ + + + + + GL++
Sbjct: 124 VSHQPGCLWLSWKPWKP--SEYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQ 181
Query: 309 STTYQIKLWAMNVNGSGPATDW 330
+ Y +++ + + G + W
Sbjct: 182 APVYTLQMRCIRSSLPGFWSPW 203
Score = 52.1 bits (124), Expect = 1e-07
Identities = 14/102 (13%), Positives = 31/102 (30%), Gaps = 6/102 (5%)
Query: 55 TLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYN---ATARV 111
L + + P + L W P + Y+ + +++
Sbjct: 113 MLQALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSSKD 172
Query: 112 EAIIQGLHPNTSYTFRVVAYNALGAGL---ASSALPVKTEPE 150
+ + GLH YT ++ + G S L ++ +
Sbjct: 173 QFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRPTMK 214
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 104
Score = 70.6 bits (173), Expect = 4e-15
Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 6/104 (5%)
Query: 545 TTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEES 604
++ + P PR LT+ + P V+L WQP + Y + S + E
Sbjct: 2 SSGSSGPLPPPRALTLAAV--TPRTVHLTWQPS----AGATHYLVRCSPASPKGEEEERE 55
Query: 605 VVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTAS 648
V + + GLEPGR Y +++ S T S
Sbjct: 56 VQVGRPEVLLDGLEPGRDYEVSVQSLRGPEGSEARGIRARTPTS 99
Score = 59.8 bits (145), Expect = 3e-11
Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 8/99 (8%)
Query: 154 PSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTS---VERHVVTPQLSYE 210
PP + + V ++ +TW+ HY + ER V +
Sbjct: 9 LPPPRALTLAAVTPRTVHLTWQPS----AGATHYLVRCSPASPKGEEEEREVQVGRPEVL 64
Query: 211 LTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPS 249
L GL Y + V + G ++ + +T + PS
Sbjct: 65 LDGLEPGRDYEVSVQSLRGPEGS-EARGIRARTPTSGPS 102
Score = 56.0 bits (135), Expect = 6e-10
Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 11/105 (10%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANI 509
PP L ++P ++ ++W Q HYLVR + + +
Sbjct: 11 PPRALTLAAVTPRTVHLTW----------QPSAGATHYLVRCSPASPKGEEEEREVQVGR 60
Query: 510 TSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASA 554
V ++ L P YE +V+ +R + SE I T + P+S
Sbjct: 61 PEVLLDGLEPGRDYEVSVQSLRGPEGSEARGIRA-RTPTSGPSSG 104
Score = 53.7 bits (129), Expect = 4e-09
Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 2/86 (2%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAIIQ 116
P++++ V PR+V L W P + V C +G E ER E ++
Sbjct: 9 LPPPRALTLAAVTPRTVHLTWQPSAGATHYL-VRCSPASPKGEEEEREVQVGRP-EVLLD 66
Query: 117 GLHPNTSYTFRVVAYNALGAGLASSA 142
GL P Y V + A
Sbjct: 67 GLEPGRDYEVSVQSLRGPEGSEARGI 92
Score = 52.9 bits (127), Expect = 7e-09
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 16/95 (16%)
Query: 243 TLSDKPSEPPAN---------SITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVT 293
+ S P PP ++ + WQP + T Y +R K + E
Sbjct: 3 SGSSGPLPPPRALTLAAVTPRTVHLTWQPSAG------ATHYLVRCSPAS-PKGEEEERE 55
Query: 294 TAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPAT 328
R ++ GL Y++ + ++ A
Sbjct: 56 VQVGRPEVLLDGLEPGRDYEVSVQSLRGPEGSEAR 90
Score = 47.9 bits (114), Expect = 4e-07
Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 5/97 (5%)
Query: 346 PDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQI-LDVKQRSDE 404
P +L P ++ ++W P A + + P ++ + V +
Sbjct: 9 LPPPRALTLAAVTPRTVHLTWQPSAG----ATHYLVRCSPASPKGEEEEREVQVGRPEVL 64
Query: 405 ITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPP 441
+ GLEP DY +S+++ + RT P
Sbjct: 65 LDGLEPGRDYEVSVQSLRGPEGSEARGIRARTPTSGP 101
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like
modifier, S NOVO protein; 2.40A {Artificial gene}
Length = 97
Score = 70.5 bits (173), Expect = 5e-15
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 5/99 (5%)
Query: 549 AAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGD 608
++ +S P L VV+ P+ + ++W + +S Y I Y E +V G
Sbjct: 2 SSVSSVPTKLEVVAA--TPTSLLISWDAS---SSSVSYYRITYGETGGNSPVQEFTVPGS 56
Query: 609 KMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTA 647
+ + GL PG Y + A S YS + +
Sbjct: 57 SSTATISGLSPGVDYTITVYAYYSYYDLYYSYSPSSINY 95
Score = 67.0 bits (164), Expect = 6e-14
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 7/95 (7%)
Query: 153 VPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVT---PQLSY 209
V S P + + +SLL++W+ + + +Y + Y E + T +
Sbjct: 4 VSSVPTKLEVVAATPTSLLISWDAS---SSSVSYYRITYGETGGNSPVQEFTVPGSSSTA 60
Query: 210 ELTGLSHFTLYSIWVVAHNGNGAGT-TSQELSVQT 243
++GLS Y+I V A+ + S+
Sbjct: 61 TISGLSPGVDYTITVYAYYSYYDLYYSYSPSSINY 95
Score = 64.7 bits (158), Expect = 4e-13
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 55 TLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYK---REGSERERAYNATARV 111
++ S P + + P S+ + W + + Y + Y +E ++
Sbjct: 3 SVSSVPTKLEVVAATPTSLLISWDASS---SSVSYYRITYGETGGNSPVQEFTVPGSSS- 58
Query: 112 EAIIQGLHPNTSYTFRVVAYNALGAGLASSA 142
A I GL P YT V AY + S +
Sbjct: 59 TATISGLSPGVDYTITVYAYYSYYDLYYSYS 89
Score = 64.3 bits (157), Expect = 6e-13
Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 11/91 (12%)
Query: 243 TLSDKP-----SEPPANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGD 297
++S P S+ + W + ++ Y++ Y + + T G
Sbjct: 3 SVSSVPTKLEVVAATPTSLLISWDAS-----SSSVSYYRITYGETG-GNSPVQEFTVPGS 56
Query: 298 RRLYVITGLNKSTTYQIKLWAMNVNGSGPAT 328
I+GL+ Y I ++A +
Sbjct: 57 SSTATISGLSPGVDYTITVYAYYSYYDLYYS 87
Score = 60.1 bits (146), Expect = 2e-11
Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 344 TVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQI-LDVKQRS 402
+V +P L+ P+S+++SW + V + + +G+ + V++ + +
Sbjct: 3 SVSSVPTKLEVVAATPTSLLISWDASSSS---VSYYRITYGETGGNSPVQEFTVPGSSST 59
Query: 403 DEITGLEPNSDYVISLRAFNEMGDGPQKYE 432
I+GL P DY I++ A+ D Y
Sbjct: 60 ATISGLSPGVDYTITVYAYYSYYDLYYSYS 89
Score = 48.2 bits (115), Expect = 3e-07
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 9/90 (10%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANI 509
P L+ +P S+ ISW +Y + Y G S + + +
Sbjct: 7 VPTKLEVVAATPTSLLISW---DASS------SSVSYYRITYGETGGNSPVQEFTVPGSS 57
Query: 510 TSVQINDLRPSTQYEFTVKVVRAKKESEWS 539
++ I+ L P Y TV + + +S
Sbjct: 58 STATISGLSPGVDYTITVYAYYSYYDLYYS 87
>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor
fold, fibronectin type III modules, helical bundle,
cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo
sapiens}
Length = 317
Score = 75.7 bits (185), Expect = 6e-15
Identities = 42/291 (14%), Positives = 80/291 (27%), Gaps = 41/291 (14%)
Query: 56 LPSAPQSVSAIMVGPRSVALRWLPP--TLPRGEILVYCVLYKREGSERERAYNATARVEA 113
P + + + G V L+W P R L Y V + ++
Sbjct: 11 SLLPPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYETRITESKAVT 70
Query: 114 IIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLN-----------VNI 162
I LH S + R + N +S A P + +N +
Sbjct: 71 I---LHMGFSASVRTILQNDHSLLASSWASAELHAPPGSPGTSIVNLTCTTNTTEDNYSR 127
Query: 163 PVVGTSSLLVTWEKPTVTNGEIKHYTLYY---------LEEDTSVERHVVTPQLSYELTG 213
SL TW T + Y LYY E +
Sbjct: 128 LRSYQVSLHCTWMVGTDAPEDT-QYFLYYRYGSWTEECQEYSMDTLGRNIACWFPRTFIL 186
Query: 214 LSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPAN--------SITVRWQPPSR 265
++ V + + A +L D+ + PP N ++++W+ P
Sbjct: 187 SKGRDWLAVLVNGSSKHSAIRPFDQLFALHAIDQIN-PPLNVTAEIEGTRMSIQWEKPVS 245
Query: 266 RGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKL 316
Y+++ + I+ ++ + Y +++
Sbjct: 246 A-FPIHCFDYEVKIHNTR-----NGYLQIEKLMTNAFISIIDDLSKYDVQV 290
Score = 70.3 bits (171), Expect = 3e-13
Identities = 46/324 (14%), Positives = 93/324 (28%), Gaps = 52/324 (16%)
Query: 245 SDKPSEPPAN---------SITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTA 295
PP N + ++W+P + Q + Y+++ +D ET T
Sbjct: 8 EKISLLPPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPK--EDDYETRIT- 64
Query: 296 GDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVP--------D 347
+T L+ + ++ N + S A+ W SAE + T
Sbjct: 65 ---ESKAVTILHMGFSASVRTILQN-DHSLLASSWASAELHAPPGSPGTSIVNLTCTTNT 120
Query: 348 IPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRS----- 402
+ S+ +W D + F +E + +D R+
Sbjct: 121 TEDNYSRLRSYQVSLHCTWMVGTDAPEDTQYFLYYRYGSWTEECQEYSMDTLGRNIACWF 180
Query: 403 -DEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSP 461
+ + + ++ + PP+ + +E+
Sbjct: 181 PRTFILSKGRDWLAVLVNGSSKHSAIRPFDQLFALHAIDQIN------PPLNVTAEI-EG 233
Query: 462 YSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPST 521
M I W Y V+ + Y I +T+ I+ + +
Sbjct: 234 TRMSIQWEKPVSAFPIHCF-----DYEVKIH----NTRNGYLQIEKLMTNAFISIIDDLS 284
Query: 522 QYEFTVKVVRAKKE------SEWS 539
+Y+ V+ + SEWS
Sbjct: 285 KYDVQVRAAVSSMCREAGLWSEWS 308
Score = 64.5 bits (156), Expect = 3e-11
Identities = 38/310 (12%), Positives = 84/310 (27%), Gaps = 25/310 (8%)
Query: 349 PASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSDEITGL 408
P + + G + +++ W P DQ R L + + S +T L
Sbjct: 15 PVNFTIKVTGLAQVLLQWKPNPDQE--QRNVNLEYQVKINAPKEDDYETRITESKAVTIL 72
Query: 409 EPNSDYVISLRAFNEMGDGPQKYESLRTRNEP--PPQAPKVLI-----PPMGLKSEVLSP 461
+ N+ + S P P + L
Sbjct: 73 HMGFSASVRTILQNDHSLLASSWASAELHAPPGSPGTSIVNLTCTTNTTEDNYSRLRSYQ 132
Query: 462 YSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPST 521
S+ +W+ T + Q+ R+ + + + I I +
Sbjct: 133 VSLHCTWMVGTDAPEDTQYFLYYRYGSWTEECQEYSMDTLGRNIACWFPRTFILS-KGRD 191
Query: 522 QYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSAN 581
V + + P ++T E + + +++ W+ P SA
Sbjct: 192 WLAVLVNGSSKHSAIRPFDQLFALHAIDQI-NPPLNVTA---EIEGTRMSIQWEKPVSAF 247
Query: 582 GQIS-GYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGS----- 635
Y + + N + + + ++ Y +++A S+
Sbjct: 248 PIHCFDYEVKIHNTRNG----YLQIEKLMTNAFISIIDDLSKYDVQVRAAVSSMCREAGL 303
Query: 636 -SPYSSTVTW 644
S +S +
Sbjct: 304 WSEWSQPIYV 313
Score = 55.7 bits (133), Expect = 2e-08
Identities = 38/306 (12%), Positives = 83/306 (27%), Gaps = 49/306 (16%)
Query: 147 TEPEDHVP-SPPLNVNIPVVGTSSLLVTWEKPTVT--NGEIKHYTLYYLEEDTSVERHVV 203
P++ + PP+N I V G + +L+ W+ Y + + +
Sbjct: 4 LLPDEKISLLPPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKE--DDYET 61
Query: 204 TPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTS-QELSVQTLSDKPSEPPAN-------- 254
S +T L S+ + N + +S + P N
Sbjct: 62 RITESKAVTILHMGFSASVRTILQNDHSLLASSWASAELHAPPGSPGTSIVNLTCTTNTT 121
Query: 255 ------------SITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRL-- 300
S+ W + T Y L Y+ ++ E R +
Sbjct: 122 EDNYSRLRSYQVSLHCTWMVGT---DAPEDTQYFLYYRYGSWTEECQEYSMDTLGRNIAC 178
Query: 301 -YVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGP 359
+ T + + + + + L + P ++ A G
Sbjct: 179 WFPRTFILSKGRDWLAVLVNGSSKHSAIRPF----DQLFALHAIDQINPPLNVTAEIEG- 233
Query: 360 SSIIVSWTPPADQSIMVRGFTLG-----WGKGVPDEFVKQILDVKQRSDEITGLEPNSDY 414
+ + + W P ++++ + I+ ++ S Y
Sbjct: 234 TRMSIQWEKPVSA---FPIHCFDYEVKIHNTRNGYLQIEKL----MTNAFISIIDDLSKY 286
Query: 415 VISLRA 420
+ +RA
Sbjct: 287 DVQVRA 292
Score = 35.6 bits (81), Expect = 0.047
Identities = 26/218 (11%), Positives = 59/218 (27%), Gaps = 28/218 (12%)
Query: 442 PQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPR 501
P L+PP+ +V + + W P+ Q+ Y V+ +
Sbjct: 6 PDEKISLLPPVNFTIKVTGLAQVLLQW----KPNPDQEQRNVNLEYQVKIN-----APKE 56
Query: 502 YKYINANITSVQINDLRPSTQYEFTV--KVVRAKKESEWSMIVLNTTQEAAPASAPRDLT 559
Y S + L + + S W+ L+ +P ++ +LT
Sbjct: 57 DDYETRITESKAVTILHMGFSASVRTILQNDHSLLASSWASAELHAPPG-SPGTSIVNLT 115
Query: 560 VVSKEGDPSL---------VNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESV----- 605
+ + + ++ W A Y + Y T++ E S+
Sbjct: 116 CTTNTTEDNYSRLRSYQVSLHCTWMVGTDAPEDTQ-YFLYYRYGSWTEECQEYSMDTLGR 174
Query: 606 -VGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTV 642
+ + + + + +
Sbjct: 175 NIACWFPRTFILSKGRDWLAVLVNGSSKHSAIRPFDQL 212
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK,
fibronectin type III (FN3) domain, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Length = 107
Score = 70.2 bits (172), Expect = 6e-15
Identities = 24/102 (23%), Positives = 36/102 (35%), Gaps = 8/102 (7%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTL-PRGEILVYCVLYKREGSERERAYNATARVEAII 115
+ S+ + PR + L W G L Y + + E + ++
Sbjct: 10 SLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEW---HQMVLEPRVLL 66
Query: 116 QGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPP 157
L P+T+Y RV LG G S +T P PS P
Sbjct: 67 TKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTSP----PSGP 104
Score = 64.0 bits (156), Expect = 1e-12
Identities = 18/108 (16%), Positives = 40/108 (37%), Gaps = 6/108 (5%)
Query: 549 AAPASAPRDLTVVSKEGDPSLVNLNWQPPK-SANGQISGYTILYSSDPNTDQWIEESVVG 607
++ A + L++ + +P + L W + G Y + N D+ E +
Sbjct: 5 SSGAESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVL---NQDE--EWHQMV 59
Query: 608 DKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASDMQEAGG 655
+ + L+P Y +++ G P+S + T+ + G
Sbjct: 60 LEPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTSPPSGPSSG 107
Score = 62.9 bits (153), Expect = 3e-12
Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 7/105 (6%)
Query: 231 GAGTTSQELSVQTLSDKPSEPPANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGE 290
G+ +S S+ LS K + + + W R G ++ Y+L +D ++
Sbjct: 1 GSSGSSGAESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLS-YELHVLNQD-EEWHQM 58
Query: 291 TVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAET 335
+ ++T L TTY +++ + G GP + T
Sbjct: 59 VLEPR-----VLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRT 98
Score = 62.1 bits (151), Expect = 5e-12
Identities = 24/100 (24%), Positives = 35/100 (35%), Gaps = 5/100 (5%)
Query: 154 PSPPLNVNIPVVGTSSLLVTWEKPTV-TNGEIKHYTLYYLEEDTSVERHVVTPQLSYELT 212
L++ + L +TW G Y L+ L +D + V+ P LT
Sbjct: 10 SLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMVLEP--RVLLT 67
Query: 213 GLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPP 252
L T Y + V G G S + +T PS P
Sbjct: 68 KLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTS--PPSGPS 105
Score = 42.1 bits (99), Expect = 5e-05
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 5/84 (5%)
Query: 346 PDIPASLKARPGGPSSIIVSWTPPA-DQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSDE 404
SLK P + ++W + L + V +
Sbjct: 10 SLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQ----MVLEPRVL 65
Query: 405 ITGLEPNSDYVISLRAFNEMGDGP 428
+T L+P++ Y++ +R +G GP
Sbjct: 66 LTKLQPDTTYIVRVRTLTPLGPGP 89
Score = 35.9 bits (83), Expect = 0.007
Identities = 17/119 (14%), Positives = 31/119 (26%), Gaps = 17/119 (14%)
Query: 438 NEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGA 497
++ + LK P + ++W G Y +
Sbjct: 4 GSSGAESL----SGLSLKLVKKEPRQLELTW---AGSRPRNPGGNLS--YELHVL----- 49
Query: 498 SNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPR 556
+ + V + L+P T Y V+ + +S T P S P
Sbjct: 50 NQDEEWHQMVLEPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTS---PPSGPS 105
>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor
complex, alpha helical cytokin beta sandwhich receptor
fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}
Length = 206
Score = 73.2 bits (179), Expect = 8e-15
Identities = 32/207 (15%), Positives = 58/207 (28%), Gaps = 23/207 (11%)
Query: 54 LTLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAY-------- 105
+ + APQ +S + + + L W P P GE + Y V Y+ E ++
Sbjct: 4 VAILPAPQQLSVLSTNMKHL-LMWSPVIAP-GETVYYSVEYQGEYESLYTSHIWIPSSWC 61
Query: 106 -NATARVEAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPV 164
+ + Y RV A S + P + +
Sbjct: 62 SLTEGPECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTRPGMEI---T 118
Query: 165 VGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERH---VVTPQLSYELTGLSHFTLYS 221
L++ E G + + Y + E H V + + L + Y
Sbjct: 119 KDGFHLVIELEDL----GPQFEFLVAYWRREPGAEEHVKMVRSGGIPVHLETMEPGAAYC 174
Query: 222 IWVVAH--NGNGAGTTSQELSVQTLSD 246
+ SQ V+ +
Sbjct: 175 VKAQTFVKAIGRYSAFSQTECVEVQGE 201
Score = 62.8 bits (152), Expect = 2e-11
Identities = 26/172 (15%), Positives = 56/172 (32%), Gaps = 13/172 (7%)
Query: 486 HYLVRYTHLLGASNPRYKYINANITSVQIN---DLRPSTQYEFTVKVVRAKKESEWSMIV 542
Y Y L + + + + D+ + Y V+ + S WS++
Sbjct: 41 EYQGEYESLYTSHIWIPSSWCSLTEGPECDVTDDITATVPYNLRVRATLGSQTSAWSILK 100
Query: 543 LNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIE 602
+++ + P ++K+G ++ L P + + Y +
Sbjct: 101 HPFNRQSTILTRPG--MEITKDGFHLVIELEDLGP------QFEFLVAYWRREPGAEEHV 152
Query: 603 ESVVGDKMSTNVRGLEPGRIYYFKIKARNSA--GSSPYSSTVTWTTASDMQE 652
+ V + ++ +EPG Y K + A S +S T + E
Sbjct: 153 KMVRSGGIPVHLETMEPGAAYCVKAQTFVKAIGRYSAFSQTECVEVQGEAIE 204
Score = 60.9 bits (147), Expect = 1e-10
Identities = 21/201 (10%), Positives = 49/201 (24%), Gaps = 26/201 (12%)
Query: 153 VPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKH---YTLYYLEEDTSVERHVV-----T 204
+ P +++ LL W + + Y Y TS T
Sbjct: 6 ILPAPQQLSVLSTNMKHLL-MWSPVIAPGETVYYSVEYQGEYESLYTSHIWIPSSWCSLT 64
Query: 205 PQLSYELT-GLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPP-------ANSI 256
++T ++ Y++ V A G+ S P +
Sbjct: 65 EGPECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTRPGMEITKDGFHL 124
Query: 257 TVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKL 316
+ + G + + Y +++ ++ + + Y +K
Sbjct: 125 VIELEDL------GPQFEFLVAYWRREPGAEE-HVKMVRSGGIPVHLETMEPGAAYCVKA 177
Query: 317 WAM--NVNGSGPATDWFSAET 335
+ + E
Sbjct: 178 QTFVKAIGRYSAFSQTECVEV 198
Score = 51.2 bits (122), Expect = 2e-07
Identities = 17/178 (9%), Positives = 49/178 (27%), Gaps = 19/178 (10%)
Query: 257 TVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVIT------GLNKST 310
+ W P G+ Y + Y+ + + L + +
Sbjct: 23 LLMWSPVIAPGET---VYYSVEYQGEYESLYTSHIWIPSSWCSLTEGPECDVTDDITATV 79
Query: 311 TYQIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPA 370
Y +++ A + + W + + ++ G +++
Sbjct: 80 PYNLRVRATLGSQTSA---WSILKHPFNRQ---STILTRPGMEITKDG-FHLVIELEDLG 132
Query: 371 DQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGP 428
Q + + W + E +++ + +EP + Y + + F +
Sbjct: 133 PQFEFLVAY---WRREPGAEEHVKMVRSGGIPVHLETMEPGAAYCVKAQTFVKAIGRY 187
Score = 35.0 bits (80), Expect = 0.045
Identities = 10/85 (11%), Positives = 23/85 (27%), Gaps = 4/85 (4%)
Query: 50 INETLTLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNA-- 107
+ S + + + L L G + V Y R E
Sbjct: 99 LKHPFNRQSTILTRPGMEITKDGFHLVIELEDL--GPQFEFLVAYWRREPGAEEHVKMVR 156
Query: 108 TARVEAIIQGLHPNTSYTFRVVAYN 132
+ + ++ + P +Y + +
Sbjct: 157 SGGIPVHLETMEPGAAYCVKAQTFV 181
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A
1fna_A
Length = 101
Score = 69.4 bits (170), Expect = 1e-14
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 153 VPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVT---PQLSY 209
V S P + + +SLL++W+ P ++ + +Y + Y E + T +
Sbjct: 4 VSSVPTKLEVVAATPTSLLISWDAPM-SSSSVYYYRITYGETGGNSPVQEFTVPYSSSTA 62
Query: 210 ELTGLSHFTLYSIWVVAHNGNGAGTTSQELSV 241
++GLS Y+I V A + AG +
Sbjct: 63 TISGLSPGVDYTITVYAWGEDSAGYMFMYSPI 94
Score = 68.6 bits (168), Expect = 2e-14
Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 3/93 (3%)
Query: 55 TLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSE--RERAYNATARVE 112
++ S P + + P S+ + W P + Y + Y G + +
Sbjct: 3 SVSSVPTKLEVVAATPTSLLISWDAPM-SSSSVYYYRITYGETGGNSPVQEFTVPYSSST 61
Query: 113 AIIQGLHPNTSYTFRVVAYNALGAGLASSALPV 145
A I GL P YT V A+ AG P+
Sbjct: 62 ATISGLSPGVDYTITVYAWGEDSAGYMFMYSPI 94
Score = 65.9 bits (161), Expect = 2e-13
Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 7/102 (6%)
Query: 549 AAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGD 608
++ +S P L VV+ P+ + ++W P S + + Y I Y E +V
Sbjct: 2 SSVSSVPTKLEVVAA--TPTSLLISWDAPMS-SSSVYYYRITYGETGGNSPVQEFTVPYS 58
Query: 609 KMSTNVRGLEPGRIYYFKIKARNSAGSSPYSS----TVTWTT 646
+ + GL PG Y + A + ++ + T
Sbjct: 59 SSTATISGLSPGVDYTITVYAWGEDSAGYMFMYSPISINYRT 100
Score = 65.9 bits (161), Expect = 2e-13
Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 9/93 (9%)
Query: 243 TLSDKP-----SEPPANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGD 297
++S P S+ + W P + + Y++ Y + + T
Sbjct: 3 SVSSVPTKLEVVAATPTSLLISWDAPMS---SSSVYYYRITYGETG-GNSPVQEFTVPYS 58
Query: 298 RRLYVITGLNKSTTYQIKLWAMNVNGSGPATDW 330
I+GL+ Y I ++A + +G +
Sbjct: 59 SSTATISGLSPGVDYTITVYAWGEDSAGYMFMY 91
Score = 63.3 bits (154), Expect = 1e-12
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 344 TVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQI-LDVKQRS 402
+V +P L+ P+S+++SW P S V + + +G+ + V++ + +
Sbjct: 3 SVSSVPTKLEVVAATPTSLLISWDAPMSSS-SVYYYRITYGETGGNSPVQEFTVPYSSST 61
Query: 403 DEITGLEPNSDYVISLRAFNEMGDGPQKYES 433
I+GL P DY I++ A+ E G S
Sbjct: 62 ATISGLSPGVDYTITVYAWGEDSAGYMFMYS 92
Score = 48.2 bits (115), Expect = 3e-07
Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 7/90 (7%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANI 509
P L+ +P S+ ISW P +Y + Y G S + + +
Sbjct: 7 VPTKLEVVAATPTSLLISW---DAP----MSSSSVYYYRITYGETGGNSPVQEFTVPYSS 59
Query: 510 TSVQINDLRPSTQYEFTVKVVRAKKESEWS 539
++ I+ L P Y TV
Sbjct: 60 STATISGLSPGVDYTITVYAWGEDSAGYMF 89
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 72.6 bits (178), Expect = 1e-14
Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 7/102 (6%)
Query: 54 LTLPSAPQSVSAIMVGPRSVALRWLPPTLPRG-EILVYCVLYKREGSERERAYNATARV- 111
PS+P + + +++ P G IL Y ++ G E + A+
Sbjct: 111 ADTPSSPSID-QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEA 169
Query: 112 ----EAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEP 149
I GL P T+Y R+ A N G G S+A KT+P
Sbjct: 170 SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQP 211
Score = 67.9 bits (166), Expect = 4e-13
Identities = 35/180 (19%), Positives = 60/180 (33%), Gaps = 24/180 (13%)
Query: 157 PLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTPQLSYELT---- 212
+N+ V S ++W + +G++ L + + L
Sbjct: 35 QVNITCEVFAYPSATISWFR----DGQL-------LPSSNYSNIKIYNTPSASYLEVTPD 83
Query: 213 GLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPP----ANSITVRWQPPSRRGQ 268
+ F Y+ A N G + L PS +++ V++ P G
Sbjct: 84 SENDFGNYNC--TAVNRIGQESLEFILVQADTPSSPSIDQVEPYSSTAQVQFDEPEATG- 140
Query: 269 NGIITGYKLRYKKK--DVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGP 326
I YK ++ +V K A + I GL TTY ++L A+N G G
Sbjct: 141 GVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGE 200
Score = 66.0 bits (161), Expect = 2e-12
Identities = 18/108 (16%), Positives = 34/108 (31%), Gaps = 13/108 (12%)
Query: 552 ASAPRDLTVVSKEGDPSL---------VNLNWQPPKSANG-QISGYTILY---SSDPNTD 598
S L PS+ + + P++ G I Y + +
Sbjct: 102 ESLEFILVQADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHS 161
Query: 599 QWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTT 646
+W + + + GL+P Y ++ A N G S+ + T
Sbjct: 162 KWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 209
Score = 60.2 bits (146), Expect = 2e-10
Identities = 26/135 (19%), Positives = 45/135 (33%), Gaps = 18/135 (13%)
Query: 124 YTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNG- 182
Y A N +G L PS P + +++ + +++P T G
Sbjct: 91 YN--CTAVNRIGQESLEFILVQAD-----TPSSPSIDQVEPYSSTAQV-QFDEPEATGGV 142
Query: 183 EIKHYTLYYLEEDTSVERHV------VTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTS 236
I Y + V + + + GL T Y++ + A NG G G S
Sbjct: 143 PILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEIS 202
Query: 237 QELSVQTLSDKPSEP 251
+T +P +
Sbjct: 203 AASEFKT---QPVQG 214
Score = 46.0 bits (109), Expect = 1e-05
Identities = 28/153 (18%), Positives = 49/153 (32%), Gaps = 19/153 (12%)
Query: 283 DVKKDKGETVTTAGDRRLYVITGLNK--STTYQIKLWAMNVNGSGPATDWFSAETFSQDL 340
+ +T ++ Y A+N G E+ L
Sbjct: 60 PSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCT--AVNRIGQ---------ESLEFIL 108
Query: 341 GEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIM-VRGFTLGWGKGVPDEFVKQILDVK 399
+ P P+ + P S+ V + P + + + W + + + D K
Sbjct: 109 VQADTPSSPSIDQVEPYS-STAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAK 167
Query: 400 QRSDE----ITGLEPNSDYVISLRAFNEMGDGP 428
+ S E I GL+P + Y + L A N G G
Sbjct: 168 EASMEGIVTIVGLKPETTYAVRLAALNGKGLGE 200
Score = 30.2 bits (68), Expect = 1.7
Identities = 11/38 (28%), Positives = 14/38 (36%)
Query: 510 TSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQ 547
V I L+P T Y + + K E S TQ
Sbjct: 173 GIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 210
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 124
Score = 70.1 bits (172), Expect = 1e-14
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 10/108 (9%)
Query: 56 LPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARV---- 111
LP P ++ +GPRSV L++ P + I + V + + ++
Sbjct: 17 LPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEP 76
Query: 112 ---EAIIQGLHPNTSYTFRVVAYNALGAGLASSA-LPVKTEPEDHVPS 155
+ L+P T Y+FR+ N +G S ++T PS
Sbjct: 77 DARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTLQS--GPS 122
Score = 65.1 bits (159), Expect = 7e-13
Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 8/110 (7%)
Query: 535 ESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSD 594
S S + + P P +L + + P V L ++P IS + +
Sbjct: 2 SSGSSGTISSGVPPELP-GPPTNLGISNI--GPRSVTLQFRPGYDGKTSISRWLVEAQVG 58
Query: 595 PNTD-----QWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYS 639
+ + S D S V L P Y F+++ N G+SP S
Sbjct: 59 VVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPS 108
Score = 54.7 bits (132), Expect = 3e-09
Identities = 28/124 (22%), Positives = 44/124 (35%), Gaps = 11/124 (8%)
Query: 135 GAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEE 194
G+ +S + PE +P PP N+ I +G S+ + + I + +
Sbjct: 1 GSSGSSGTISSGVPPE--LPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVG 58
Query: 195 DTS--------VERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQE-LSVQTLS 245
+ S E+ L+ FT YS + N G SQ +QTL
Sbjct: 59 VVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTLQ 118
Query: 246 DKPS 249
PS
Sbjct: 119 SGPS 122
Score = 50.4 bits (121), Expect = 8e-08
Identities = 19/108 (17%), Positives = 43/108 (39%), Gaps = 14/108 (12%)
Query: 231 GAGTTSQELSVQTLSDKPSEPP--------ANSITVRWQPPSRRGQNGIITGYKLRYKKK 282
G+ +S +S + P P S+T++++P + I+ + + +
Sbjct: 1 GSSGSSGTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPGYDGKTS--ISRWLVEAQVG 58
Query: 283 DVKKDKG----ETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGP 326
V + + ++ D R + LN T Y ++ +N+ G+ P
Sbjct: 59 VVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSP 106
Score = 48.5 bits (116), Expect = 5e-07
Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 14/130 (10%)
Query: 323 GSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTL- 381
GS ++ S+ +P P +L GP S+ + + P D + + +
Sbjct: 1 GSSGSSGTISSGV------PPELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVE 54
Query: 382 -----GWGKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGP--QKYESL 434
+ + RS E+ L P + Y +R N +G P Q +
Sbjct: 55 AQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKI 114
Query: 435 RTRNEPPPQA 444
+T P
Sbjct: 115 QTLQSGPSSG 124
Score = 32.7 bits (75), Expect = 0.14
Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 425 GDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEG 484
G S + PP+ P PP L + P S+ + +
Sbjct: 1 GSSG---SSGTISSGVPPELPG---PPTNLGISNIGPRSVTLQFRPG------YDGKTSI 48
Query: 485 RHYLVRYTHLLGASNPRYKYIN-----ANITSVQINDLRPSTQYEFTVKVVRAKKESEWS 539
+LV + + I+ + S+++ DL P T Y F ++ V S S
Sbjct: 49 SRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPS 108
Query: 540 MIVLN-TTQEAAPASA 554
T ++ P+S
Sbjct: 109 QPSRKIQTLQSGPSSG 124
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 105
Score = 69.0 bits (169), Expect = 1e-14
Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 6/103 (5%)
Query: 545 TTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEES 604
++ + S P +L + S+ P + ++W PP G++ Y + Y+ S
Sbjct: 2 SSGSSGR-SPPSNLALASET--PDSLQVSWTPP---LGRVLHYWLTYAPASGLGPEKSVS 55
Query: 605 VVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTA 647
V G + + L+ Y + A +AG S S T
Sbjct: 56 VPGARSHVTLPDLQAATKYRVLVSAIYAAGRSEAVSATGQTAC 98
Score = 67.1 bits (164), Expect = 9e-14
Identities = 24/99 (24%), Positives = 31/99 (31%), Gaps = 6/99 (6%)
Query: 154 PSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVT---PQLSYE 210
SPP N+ + SL V+W P G + HY L Y V+ +
Sbjct: 8 RSPPSNLALASETPDSLQVSWTPP---LGRVLHYWLTYAPASGLGPEKSVSVPGARSHVT 64
Query: 211 LTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPS 249
L L T Y + V A G PS
Sbjct: 65 LPDLQAATKYRVLVSAIYAAGRSEAVSATGQTACPSGPS 103
Score = 62.8 bits (153), Expect = 3e-12
Identities = 27/111 (24%), Positives = 40/111 (36%), Gaps = 12/111 (10%)
Query: 52 ETLTLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYK---REGSERERAYNAT 108
+ S P +++ P S+ + W PP G +L Y + Y G E+ +
Sbjct: 3 SGSSGRSPPSNLALASETPDSLQVSWTPP---LGRVLHYWLTYAPASGLGPEKSVSVPGA 59
Query: 109 ARVEAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLN 159
+ L T Y V A A G A SA +T PS P +
Sbjct: 60 RS-HVTLPDLQAATKYRVLVSAIYAAGRSEAVSA-TGQTAC----PSGPSS 104
Score = 60.2 bits (146), Expect = 2e-11
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 11/93 (11%)
Query: 240 SVQTLSDKP-----SEPPANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTT 294
S + P + +S+ V W PP G + Y L Y + ++V+
Sbjct: 3 SGSSGRSPPSNLALASETPDSLQVSWTPP-----LGRVLHYWLTYAPASGLGPE-KSVSV 56
Query: 295 AGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPA 327
G R + L +T Y++ + A+ G A
Sbjct: 57 PGARSHVTLPDLQAATKYRVLVSAIYAAGRSEA 89
Score = 58.2 bits (141), Expect = 1e-10
Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 4/102 (3%)
Query: 344 TVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQI-LDVKQRS 402
+ P++L P S+ VSWTPP + V + L + K + + +
Sbjct: 6 SGRSPPSNLALASETPDSLQVSWTPPLGR---VLHYWLTYAPASGLGPEKSVSVPGARSH 62
Query: 403 DEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQA 444
+ L+ + Y + + A G + +T P +
Sbjct: 63 VTLPDLQAATKYRVLVSAIYAAGRSEAVSATGQTACPSGPSS 104
Score = 56.7 bits (137), Expect = 4e-10
Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 9/104 (8%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANI 509
PP L +P S+++SW T + HY + Y G + +
Sbjct: 10 PPSNLALASETPDSLQVSW--TPPLGRVL-------HYWLTYAPASGLGPEKSVSVPGAR 60
Query: 510 TSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPAS 553
+ V + DL+ +T+Y V + A SE T + P+S
Sbjct: 61 SHVTLPDLQAATKYRVLVSAIYAAGRSEAVSATGQTACPSGPSS 104
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell
adhesion, coiled coil, EGF-like domain, extracellular
matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A
1ten_A
Length = 104
Score = 69.0 bits (169), Expect = 2e-14
Identities = 18/105 (17%), Positives = 41/105 (39%), Gaps = 7/105 (6%)
Query: 154 PSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVT---PQLSYE 210
P + + V ++ L+TW P + + + L Y +D +R + + Y
Sbjct: 3 LDAPSQIEVKDVTDTTALITWMPP---SQPVDGFELTYGIKDVPGDRTTIDLTEDENQYS 59
Query: 211 LTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPANS 255
+ L T Y + +++ G+ + ++E + T E +
Sbjct: 60 IGNLKPDTEYEVSLISRRGDMSSNPAKE-TFTTGLAAALEHHHHH 103
Score = 63.2 bits (154), Expect = 2e-12
Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 346 PDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWG-KGVPDEFVKQILDVKQRSDE 404
D P+ ++ + ++ +++W PP+ V GF L +G K VP + L +
Sbjct: 3 LDAPSQIEVKDVTDTTALITWMPPSQP---VDGFELTYGIKDVPGDRTTIDLTEDENQYS 59
Query: 405 ITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQ 443
I L+P+++Y +SL + E+ T +
Sbjct: 60 IGNLKPDTEYEVSLISRRGDMSSNPAKETFTTGLAAALE 98
Score = 62.4 bits (152), Expect = 3e-12
Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 6/96 (6%)
Query: 554 APRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTN 613
AP + V + + W PP + + G+ + Y + D+ +
Sbjct: 5 APSQIEVKDV--TDTTALITWMPP---SQPVDGFELTYGIKDVPGDRTTIDLTEDENQYS 59
Query: 614 VRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649
+ L+P Y + +R SS + T+TT
Sbjct: 60 IGNLKPDTEYEVSLISRRGDMSSN-PAKETFTTGLA 94
Score = 61.3 bits (149), Expect = 7e-12
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 253 ANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTY 312
+ + W PP + + G++L Y KDV D+ T+ D Y I L T Y
Sbjct: 16 DTTALITWMPP-----SQPVDGFELTYGIKDVPGDR-TTIDLTEDENQYSIGNLKPDTEY 69
Query: 313 QIKLWAMNVNGSGPAT 328
++ L + + S
Sbjct: 70 EVSLISRRGDMSSNPA 85
Score = 60.5 bits (147), Expect = 2e-11
Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 10/104 (9%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYK---REGSERERAYNATARVEA 113
AP + V + + W+PP + + + Y G +
Sbjct: 3 LDAPSQIEVKDVTDTTALITWMPP---SQPVDGFELTYGIKDVPGDRTTIDLTEDEN-QY 58
Query: 114 IIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPP 157
I L P+T Y +++ + + T
Sbjct: 59 SIGNLKPDTEYEVSLISRRGDMSSNPAKE-TFTTGLA--AALEH 99
Score = 50.5 bits (121), Expect = 5e-08
Identities = 18/104 (17%), Positives = 37/104 (35%), Gaps = 10/104 (9%)
Query: 448 LIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINA 507
L P ++ + ++ + I+W P + + + Y + +
Sbjct: 3 LDAPSQIEVKDVTDTTALITW---MPPS------QPVDGFELTYGIKDVPGDRTTIDLTE 53
Query: 508 NITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAP 551
+ I +L+P T+YE ++ R S + TT AA
Sbjct: 54 DENQYSIGNLKPDTEYEVSLISRRGDMSSNPAKETF-TTGLAAA 96
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 117
Score = 69.3 bits (170), Expect = 2e-14
Identities = 32/117 (27%), Positives = 40/117 (34%), Gaps = 5/117 (4%)
Query: 43 STGSIEAINETLTLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERE 102
S+GS + LP P V SV L W P T Y + +
Sbjct: 2 SSGSSGKNYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNS 61
Query: 103 --RAYNATARVEAIIQGLHPNTSYTFRVVAYNALGAGLASSA-LPVKTEPEDHVPSP 156
N ++GL PNT Y F V A N G S PV+T+ PS
Sbjct: 62 WQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDS--GPSS 116
Score = 65.1 bits (159), Expect = 5e-13
Identities = 26/97 (26%), Positives = 33/97 (34%), Gaps = 2/97 (2%)
Query: 553 SAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMST 612
P V + V L+WQP S Y I S ++ W +
Sbjct: 17 GPPSKPQVTDVTKNS--VTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKTTLY 74
Query: 613 NVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649
VRGL P IY F ++A N G S S D
Sbjct: 75 TVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQD 111
Score = 50.8 bits (122), Expect = 5e-08
Identities = 21/102 (20%), Positives = 32/102 (31%), Gaps = 3/102 (2%)
Query: 153 VPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVT---PQLSY 209
+P PP + V +S+ ++W+ T Y + + S V Y
Sbjct: 15 LPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKTTLY 74
Query: 210 ELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEP 251
+ GL T+Y V A N G S D
Sbjct: 75 TVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGPSS 116
Score = 47.4 bits (113), Expect = 8e-07
Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 3/104 (2%)
Query: 344 TVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTL-GWGKGVPDEFVKQILDVKQRS 402
+P P+ + +S+ +SW P ++ + + + + V + + VK
Sbjct: 14 DLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKTTL 73
Query: 403 DEITGLEPNSDYVISLRAFNEMGDGP--QKYESLRTRNEPPPQA 444
+ GL PN+ Y+ +RA N G + +RT++ P
Sbjct: 74 YTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGPSSG 117
Score = 45.4 bits (108), Expect = 4e-06
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 8/99 (8%)
Query: 233 GTTSQELSVQTLSDKPSEPP-----ANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKD 287
G++ + + L PS+P NS+T+ WQP + + Y + + V
Sbjct: 4 GSSGKNYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLP--ASAYIIEAFSQSVSNS 61
Query: 288 KGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGP 326
+TV LY + GL +T Y + A+N G
Sbjct: 62 -WQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSD 99
Score = 32.3 bits (74), Expect = 0.16
Identities = 21/108 (19%), Positives = 45/108 (41%), Gaps = 11/108 (10%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANI 509
PP + ++ S+ +SW T Y++ + + ++ + ++
Sbjct: 18 PPSKPQVTDVTKNSVTLSWQPGT------PGTLPASAYIIEAFSQ--SVSNSWQTVANHV 69
Query: 510 --TSVQINDLRPSTQYEFTVKVVRAKKESEWSMIV-LNTTQEAAPASA 554
T + LRP+T Y F V+ + + S+ S + TQ++ P+S
Sbjct: 70 KTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGPSSG 117
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type
III domain containing protein, cytoskeleton, muscle
contraction; NMR {Mus musculus} SCOP: b.1.2.1
Length = 111
Score = 68.9 bits (169), Expect = 2e-14
Identities = 31/104 (29%), Positives = 40/104 (38%), Gaps = 6/104 (5%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLPRG-EILVYCVLYKREGSERERAYNA--TARVEA 113
SAPQ ++ V + L+W PP I Y V Y EGSE N R
Sbjct: 9 TSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGF 68
Query: 114 IIQGLHPNTSYTFRVVAYNALGAGLASSAL-PVKTEPEDHVPSP 156
++ L FRVV N G ++ L PV + PS
Sbjct: 69 TVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTI--RESGPSS 110
Score = 67.0 bits (164), Expect = 9e-14
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 5/107 (4%)
Query: 545 TTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANG-QISGYTILYSSDPNTDQWIE- 602
++ + P SAP+ LTV + L W+PP I GY + Y + +++W+
Sbjct: 2 SSGSSGPTSAPQHLTVEDV--TDTTTTLKWRPPDRIGAGGIDGYLVEYCLE-GSEEWVPA 58
Query: 603 ESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649
++ V+ L G F++ N AG S ++ + T +
Sbjct: 59 NKEPVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRE 105
Score = 55.1 bits (133), Expect = 2e-09
Identities = 16/105 (15%), Positives = 30/105 (28%), Gaps = 5/105 (4%)
Query: 153 VPSPPLNVNIPVVGTSSLLVTWEKPTVTNG-EIKHYTLYYLEEDTSVERHVVT---PQLS 208
S P ++ + V ++ + W P I Y + Y E + +
Sbjct: 8 PTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCG 67
Query: 209 YELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPA 253
+ + L VV N G + L T+ +
Sbjct: 68 FTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRE-SGPSSG 111
Score = 41.6 bits (98), Expect = 9e-05
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 10/78 (12%)
Query: 253 ANSITVRWQPPSRRGQNGIITGYKLRYKKKD----VKKDKGETVTTAGDRRLYVITGLNK 308
+ T++W+PP R G G I GY + Y + V +K + + L
Sbjct: 22 DTTTTLKWRPPDRIG-AGGIDGYLVEYCLEGSEEWVPANKEPVERCG-----FTVKDLPT 75
Query: 309 STTYQIKLWAMNVNGSGP 326
++ +N+ G
Sbjct: 76 GARILFRVVGVNIAGRSE 93
Score = 36.6 bits (85), Expect = 0.005
Identities = 14/106 (13%), Positives = 30/106 (28%), Gaps = 4/106 (3%)
Query: 341 GEFTVPDIPASLKARPGGPSSIIVSWTPPA-DQSIMVRGFTL-GWGKGVPDEFVKQILDV 398
G P L ++ + W PP + + G+ + +G + V
Sbjct: 4 GSSGPTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPV 63
Query: 399 KQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYES--LRTRNEPPP 442
++ + L + + + N G + R P
Sbjct: 64 ERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRESGPS 109
Score = 30.8 bits (70), Expect = 0.46
Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 6/106 (5%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANI 509
P L E ++ + + W PD+ YLV Y
Sbjct: 11 APQHLTVEDVTDTTTTLKW---RPPDR--IGAGGIDGYLVEYCLEGSEEWVPANKEPVER 65
Query: 510 TSVQINDLRPSTQYEFTVKVVRAKKESEWSMIV-LNTTQEAAPASA 554
+ DL + F V V SE + ++ T +E+ P+S
Sbjct: 66 CGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRESGPSSG 111
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, cell adhesion; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 108
Score = 68.4 bits (167), Expect = 3e-14
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 546 TQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESV 605
+ ++ S PR L V P V L+W PP+ ++ GY + + ++ +V
Sbjct: 2 SSGSSGLSPPRGLVAVR---TPRGVLLHWDPPELVPKRLDGYVLEGRQGSQGWEVLDPAV 58
Query: 606 VGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTA 647
G + V GL +Y F++ A + S S+T +T+
Sbjct: 59 AGTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTS 100
Score = 59.9 bits (145), Expect = 3e-11
Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 7/103 (6%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATA--RVEAI 114
S P+ + A + PR V L W PP L + Y + ++ E A A E +
Sbjct: 8 LSPPRGLVA-VRTPRGVLLHWDPPELVPKRLDGYVLEGRQGSQGWEVLDPAVAGTETELL 66
Query: 115 IQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPP 157
+ GL + Y FR+VA+ S+ V T S P
Sbjct: 67 VPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTSG----LSGP 105
Score = 51.9 bits (124), Expect = 2e-08
Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 5/105 (4%)
Query: 147 TEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEED---TSVERHVV 203
+ SPP + + V +L+ W+ P + + Y L + ++ V
Sbjct: 2 SSGSS-GLSPPRGL-VAVRTPRGVLLHWDPPELVPKRLDGYVLEGRQGSQGWEVLDPAVA 59
Query: 204 TPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKP 248
+ + GL LY +VA G+ S +V T
Sbjct: 60 GTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTSGLSG 104
Score = 42.2 bits (99), Expect = 4e-05
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 2/88 (2%)
Query: 359 PSSIIVSWTPPADQSIMVRGFTLGWGKGVPD-EFVKQILDVKQRSDEITGLEPNSDYVIS 417
P +++ W PP + G+ L +G E + + + + GL + Y
Sbjct: 20 PRGVLLHWDPPELVPKRLDGYVLEGRQGSQGWEVLDPAVAGTETELLVPGLIKDVLYEFR 79
Query: 418 LRAFNEMGDG-PQKYESLRTRNEPPPQA 444
L AF P ++ T P +
Sbjct: 80 LVAFAGSFVSDPSNTANVSTSGLSGPSS 107
Score = 41.1 bits (96), Expect = 1e-04
Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 11/87 (12%)
Query: 248 PSEPPAN--------SITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRR 299
PP + + W PP + GY L ++ + + AG
Sbjct: 7 GLSPPRGLVAVRTPRGVLLHWDPPELVP--KRLDGYVLEGRQGS-QGWEVLDPAVAGTET 63
Query: 300 LYVITGLNKSTTYQIKLWAMNVNGSGP 326
++ GL K Y+ +L A +
Sbjct: 64 ELLVPGLIKDVLYEFRLVAFAGSFVSD 90
Score = 36.4 bits (84), Expect = 0.005
Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 7/105 (6%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANI 509
PP GL + +P + + W P+ + Y++ +
Sbjct: 10 PPRGLVAVR-TPRGVLLHWDP---PEL---VPKRLDGYVLEGRQGSQGWEVLDPAVAGTE 62
Query: 510 TSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASA 554
T + + L YEF + S+ S +T + S+
Sbjct: 63 TELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTSGLSGPSS 107
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 73.4 bits (179), Expect = 3e-14
Identities = 33/232 (14%), Positives = 70/232 (30%), Gaps = 22/232 (9%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVE---- 112
P PQ +V W P + P +L ++ + + +
Sbjct: 95 PEEPQLSCFRKSPLSNVVCEWGPRSTP-SLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQ 153
Query: 113 ----AIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVP-SPPLNVNIPVVGT 167
+ ++ Y + +++G + + + + PP N+ + V
Sbjct: 154 KFSCQLAVPEGDSSFYIVSMCVASSVG---SKFSKTQTFQGCGILQPDPPANITVTAVAR 210
Query: 168 SS--LLVTWEKPTV--TNGEIKHYTLYYLEEDTS--VERHVVTPQLSYELTGLSHFTLYS 221
+ L VTW+ P ++ + L Y E + V Q + +
Sbjct: 211 NPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRHV 270
Query: 222 IWVVAHNGNGAGT---TSQELSVQTLSDKPSEPPANSITVRWQPPSRRGQNG 270
+ + A G G S E ++ S P N ++ Q + +
Sbjct: 271 VQLRAQEEFGQGEWSEWSPEAMGTPWTESRSPPAENEVSTPMQALTTNKDDD 322
Score = 70.7 bits (172), Expect = 3e-13
Identities = 23/198 (11%), Positives = 59/198 (29%), Gaps = 16/198 (8%)
Query: 461 PYSMRISW---IDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANITSVQIN-D 516
++ W +L + + + P + S Q+
Sbjct: 108 LSNVVCEWGPRSTPSLTTKAVLL-----VRKFQNSPAEDFQEPCQYSQESQKFSCQLAVP 162
Query: 517 LRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQP 576
S+ Y ++ V + P ++TV + +P +++ WQ
Sbjct: 163 EGDSSFYIVSMCVASSVGSKFSKTQTFQGC-GILQPDPPANITVTAVARNPRWLSVTWQD 221
Query: 577 PKSA--NGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAG 634
P S + + + Y ++ + + V + + G + +++A+ G
Sbjct: 222 PHSWNSSFYRLRFELRYRAE-RSKTFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFG 280
Query: 635 SSPYS---STVTWTTASD 649
+S T ++
Sbjct: 281 QGEWSEWSPEAMGTPWTE 298
Score = 69.5 bits (169), Expect = 6e-13
Identities = 56/337 (16%), Positives = 97/337 (28%), Gaps = 50/337 (14%)
Query: 138 LASSALPVKTEPEDHVPSPP-LNVNIP---VVGTSSLLVTWEKPTVTNGEIKHYTLYYLE 193
LA P + + S P +V + V + V W
Sbjct: 1 LAPRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVL----RKPA--------A 48
Query: 194 EDTSVERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKP----- 248
+ +L L YS + G + L V ++P
Sbjct: 49 GSHPSRWAGMGRRLLLRSVQLHDSGNYSCYR-----AGRPAGTVHLLVDVPPEEPQLSCF 103
Query: 249 SEPPANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVT-----TAGDRRLYVI 303
+ P +++ W P S + T L +K + + +
Sbjct: 104 RKSPLSNVVCEWGPRS---TPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLA 160
Query: 304 TGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARP--GGPSS 361
S+ Y + + + GS ++T + PD PA++ P
Sbjct: 161 VPEGDSSFYIVSMCVASSVGSK------FSKTQTFQGCGILQPDPPANITVTAVARNPRW 214
Query: 362 IIVSWTPP--ADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLR 419
+ V+W P + S F L + F ++ Q I +V+ LR
Sbjct: 215 LSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRHVVQLR 274
Query: 420 AFNEMGDG------PQKYESLRTRNEPPPQAPKVLIP 450
A E G G P+ + T + PP +V P
Sbjct: 275 AQEEFGQGEWSEWSPEAMGTPWTESRSPPAENEVSTP 311
Score = 58.3 bits (140), Expect = 3e-09
Identities = 23/162 (14%), Positives = 50/162 (30%), Gaps = 4/162 (2%)
Query: 18 PSSSTPPNQYHLTSTTSMTASPLDTSTGSIEAINETLTLPSAPQSVSAIMVGPRSVALRW 77
+ Y ++ + + + T + + P A +V+A+ PR +++ W
Sbjct: 160 AVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTW 219
Query: 78 LPPTL--PRGEILVYCVLYKREGSER-ERAYNATARVEAIIQGLHPNTSYTFRVVAYNAL 134
P L + + Y+ E S+ + +I + ++ A
Sbjct: 220 QDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEF 279
Query: 135 GAGLASS-ALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWE 175
G G S + P SPP + + +
Sbjct: 280 GQGEWSEWSPEAMGTPWTESRSPPAENEVSTPMQALTTNKDD 321
Score = 30.2 bits (67), Expect = 2.8
Identities = 14/94 (14%), Positives = 24/94 (25%), Gaps = 8/94 (8%)
Query: 565 GDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTN------VRGLE 618
S V W P + + +L N+ + +
Sbjct: 106 SPLSNVVCEWGPRSTPSLTTK-AVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEG 164
Query: 619 PGRIYYFKIKARNSAGSSPYSSTVTWTTASDMQE 652
Y + +S GS S T T+ +Q
Sbjct: 165 DSSFYIVSMCVASSVGSKF-SKTQTFQGCGILQP 197
>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor,
antibody FAB F immunoglobulin fold; HET: NAG; 1.95A
{Homo sapiens}
Length = 206
Score = 70.9 bits (173), Expect = 4e-14
Identities = 21/195 (10%), Positives = 54/195 (27%), Gaps = 29/195 (14%)
Query: 167 TSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHV--------------VTPQLSYELT 212
+ + W T+ + L Y
Sbjct: 15 LTKMTCRWSTSTIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIFQ 74
Query: 213 GLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPANS----------ITVRWQP 262
+ + Y++W+ ++ G+ S V S PP++ + + W+
Sbjct: 75 PIFLLSGYTMWIRINHSLGS-LDSPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEK 133
Query: 263 PSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVN 322
P +++RY + + + + Y +++ ++
Sbjct: 134 PVF---PENNLQFQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCKRLD 190
Query: 323 GSGPATDWFSAETFS 337
G G ++W S ++
Sbjct: 191 GLGYWSNW-SNPAYT 204
Score = 69.3 bits (169), Expect = 1e-13
Identities = 32/184 (17%), Positives = 60/184 (32%), Gaps = 23/184 (12%)
Query: 70 PRSVALRWLPPTLPRGEILVYCVLYKR-------------EGSERERAYNATARVEAIIQ 116
+ RW T+ + Y R ++ + E I Q
Sbjct: 15 LTKMTCRWSTSTIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIFQ 74
Query: 117 GLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHV-PSPPLNVNI-PVVGTSSLLVTW 174
+ + YT + ++LG + + P P+ V P PP +V + L ++W
Sbjct: 75 PIFLLSGYTMWIRINHSLG---SLDSPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISW 131
Query: 175 EKPTVTNGEIKHYTLYYLEEDTSVERHVVTP----QLSYELTGLSHFTLYSIWVVAHNGN 230
EKP ++ + + Y V+ + S L +Y++ V +
Sbjct: 132 EKPVFPENNLQ-FQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCKRLD 190
Query: 231 GAGT 234
G G
Sbjct: 191 GLGY 194
Score = 66.3 bits (161), Expect = 2e-12
Identities = 16/137 (11%), Positives = 42/137 (30%), Gaps = 4/137 (2%)
Query: 504 YINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVSK 563
+ + + Y +++ + + + P P +
Sbjct: 63 LQSDGFYECIFQPIFLLSGYTMWIRINHSLGSLDSPPTCVLPDSVVKP-LPPSSVKA-EI 120
Query: 564 EGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDK-MSTNVRGLEPGRI 622
+ L+ ++W+ P + + I Y QW V K S ++ + +
Sbjct: 121 TINIGLLKISWEKPVFPENNL-QFQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAV 179
Query: 623 YYFKIKARNSAGSSPYS 639
Y +++ + G +S
Sbjct: 180 YAVQVRCKRLDGLGYWS 196
Score = 59.3 bits (143), Expect = 4e-10
Identities = 29/188 (15%), Positives = 62/188 (32%), Gaps = 24/188 (12%)
Query: 255 SITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRL----------YVIT 304
+T RW Q+ + +LRY + + ++ + + +
Sbjct: 17 KMTCRWSTS--TIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIFQ 74
Query: 305 GLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARP-GGPSSII 363
+ + Y + + + GS + P P+S+KA +
Sbjct: 75 PIFLLSGYTMWIRINHSLGSL------DSPPTCVLPDSVVKPLPPSSVKAEITINIGLLK 128
Query: 364 VSWTPPADQSIMVRGFTL---GWGKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRA 420
+SW P ++ F + GK V + ++ D K +S + + + Y + +R
Sbjct: 129 ISWEKPVFPENNLQ-FQIRYGLSGKEVQWKMY-EVYDAKSKSVSLPVPDLCAVYAVQVRC 186
Query: 421 FNEMGDGP 428
G G
Sbjct: 187 KRLDGLGY 194
Score = 56.2 bits (135), Expect = 4e-09
Identities = 30/213 (14%), Positives = 61/213 (28%), Gaps = 35/213 (16%)
Query: 347 DIPASLKAR-PGGPSSIIVSWTPPADQSIMVRGFTLGWGK------------GVPDEFVK 393
D+ ++ G + + W+ QS+ L + + + +
Sbjct: 2 DVNINISCETDGYLTKMTCRWSTSTIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDC 61
Query: 394 QILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPPMG 453
+ + S Y + +R + +G + + P P +
Sbjct: 62 YLQSDGFYECIFQPIFLLSGYTMWIRINHSLGSLDSPPTCVLPDSVVKPLPPSSV----- 116
Query: 454 LKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASN-PRYKYINANITSV 512
++ ++ISW P+ Q + +RY Y+ +A SV
Sbjct: 117 KAEITINIGLLKISWEKPVFPENNLQ-------FQIRYGLSGKEVQWKMYEVYDAKSKSV 169
Query: 513 QINDLRPSTQYEFTVKVVRAKKE------SEWS 539
+ Y VR K+ S WS
Sbjct: 170 SLPVPDLCAVYAVQ---VRCKRLDGLGYWSNWS 199
Score = 46.2 bits (109), Expect = 1e-05
Identities = 18/88 (20%), Positives = 26/88 (29%), Gaps = 5/88 (5%)
Query: 57 PSAPQSVSA-IMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERA---YNATARVE 112
P P SV A I + + + W P P L + + Y G E +
Sbjct: 110 PLPPSSVKAEITINIGLLKISWEKPVFP-ENNLQFQIRYGLSGKEVQWKMYEVYDAKSKS 168
Query: 113 AIIQGLHPNTSYTFRVVAYNALGAGLAS 140
+ Y +V G G S
Sbjct: 169 VSLPVPDLCAVYAVQVRCKRLDGLGYWS 196
>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor,
receptor, glycoprotein, polymorphism, secreted,
cytokine/cytokine receptor complex; 2.76A {Homo sapiens}
Length = 211
Score = 71.0 bits (173), Expect = 4e-14
Identities = 31/212 (14%), Positives = 54/212 (25%), Gaps = 29/212 (13%)
Query: 149 PEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEED----TSVERHVVT 204
H P V ++L W+ G Y + Y + E T
Sbjct: 3 QSTHESLKPQRVQFQSRNFHNIL-QWQPGRALTGNSSVYFVQYKIYGQRQWKNKEDCWGT 61
Query: 205 PQLSYELT--GLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPP-------ANS 255
+LS +LT Y V A + S + +PP S
Sbjct: 62 QELSCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPVMNITQVNGS 121
Query: 256 ITVRWQPPSRRGQNGIIT----------GYKLRYKKKDVKKDKGETVTTAGDRRLYVITG 305
+ V P+ + Y++ + E G R I
Sbjct: 122 LLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNS---LEKEQKVYEGAHRAVEIEA 178
Query: 306 LNKSTTYQIKLWAMN--VNGSGPATDWFSAET 335
L ++Y + ++ ++ E
Sbjct: 179 LTPHSSYCVVAEIYQPMLDRRSQRSEERCVEI 210
Score = 67.9 bits (165), Expect = 4e-13
Identities = 36/207 (17%), Positives = 62/207 (29%), Gaps = 24/207 (11%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAI-- 114
PQ V ++ L+W P G VY V YK G + + + +
Sbjct: 8 SLKPQRVQFQSRNFHNI-LQWQPGRALTGNSSVYFVQYKIYGQRQWKNKEDCWGTQELSC 66
Query: 115 ---IQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLL 171
+ Y RV A +A S E + P +N+ SLL
Sbjct: 67 DLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPVMNI---TQVNGSLL 123
Query: 172 VTWEKPTVTNGEIK------------HYTLYYLEEDTSVER-HVVTPQLSYELTGLSHFT 218
V P + K Y ++ + E+ + E+ L+ +
Sbjct: 124 VILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKEQKVYEGAHRAVEIEALTPHS 183
Query: 219 LYSIWVVAHN--GNGAGTTSQELSVQT 243
Y + + + S+E V+
Sbjct: 184 SYCVVAEIYQPMLDRRSQRSEERCVEI 210
Score = 54.0 bits (129), Expect = 2e-08
Identities = 29/185 (15%), Positives = 56/185 (30%), Gaps = 22/185 (11%)
Query: 257 TVRWQPPSRRGQNGIITGYKLRYKKKDVK--KDKGETVTTAGDRRLYVITGLNKSTTYQI 314
++WQP R G + Y ++YK + K+K + T + Y
Sbjct: 24 ILQWQPG--RALTGNSSVYFVQYKIYGQRQWKNKEDCWGTQELSCDLTSETSDIQEPYYG 81
Query: 315 KLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSI 374
++ A + W F+ + P + S++V P
Sbjct: 82 RVRAASAGSYSE---WSMTPRFTPW---WETKIDPPVMNITQVN-GSLLVILHAPNLPYR 134
Query: 375 MVRGFTLGWG-----------KGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNE 423
+ + E +++ + R+ EI L P+S Y + +
Sbjct: 135 YQKEKNVSIEDYYELLYRVFIINNSLEKEQKVYEGAHRAVEIEALTPHSSYCVVAEIYQP 194
Query: 424 MGDGP 428
M D
Sbjct: 195 MLDRR 199
Score = 52.9 bits (126), Expect = 7e-08
Identities = 25/185 (13%), Positives = 42/185 (22%), Gaps = 25/185 (13%)
Query: 480 HGEEGRHYLVRYTHLLGASNPRYKYINANITSVQIN----DLRPSTQYEFTVKVVRAKKE 535
Y V+Y G + K + + Y V+ A
Sbjct: 33 LTGNSSVYFVQYKIY-GQRQWKNKEDCWGTQELSCDLTSETSDIQEPYYGRVRAASAGSY 91
Query: 536 SEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISG--------- 586
SEWSM T P + + G + + P
Sbjct: 92 SEWSMTPRFTPWWETKIDPP-VMNITQVNGS---LLVILHAPNLPYRYQKEKNVSIEDYY 147
Query: 587 ---YTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSA--GSSPYSST 641
Y + N+ + ++ G + + L P Y + S S
Sbjct: 148 ELLYRVFII--NNSLEKEQKVYEGAHRAVEIEALTPHSSYCVVAEIYQPMLDRRSQRSEE 205
Query: 642 VTWTT 646
Sbjct: 206 RCVEI 210
Score = 52.5 bits (125), Expect = 7e-08
Identities = 23/186 (12%), Positives = 55/186 (29%), Gaps = 15/186 (8%)
Query: 363 IVSWTPPADQSIMVRGFTLGWGKGVPDEF--VKQILDVKQRSDEIT--GLEPNSDYVISL 418
I+ W P + + + + ++ + ++ S ++T + Y +
Sbjct: 24 ILQWQPGRALTGNSSVYFVQYKIYGQRQWKNKEDCWGTQELSCDLTSETSDIQEPYYGRV 83
Query: 419 RAFNEMGDGP-QKYESLRTRNEPPPQAPKVLIPPMG--LKSEVLSPYSMRISWIDTTLPD 475
RA + E P + I + L + +P + +
Sbjct: 84 RAASAGSYSEWSMTPRFTPWWETKIDPPVMNITQVNGSLLVILHAPNLPYRYQKEKNVSI 143
Query: 476 QFQQHGEEGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAK-- 533
+ Y V + + K +V+I L P + Y ++ +
Sbjct: 144 EDYYE----LLYRVFIIN--NSLEKEQKVYEGAHRAVEIEALTPHSSYCVVAEIYQPMLD 197
Query: 534 KESEWS 539
+ S+ S
Sbjct: 198 RRSQRS 203
Score = 49.4 bits (117), Expect = 8e-07
Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 8/130 (6%)
Query: 546 TQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEES- 604
TQ + P+ + S+ L WQP ++ G S Y + Y QW +
Sbjct: 2 TQSTHESLKPQRVQFQSRNFH---NILQWQPGRALTGNSSVYFVQYKIYGQ-RQWKNKED 57
Query: 605 ---VVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASDMQEAGGIPNSNQ 661
+ YY +++A ++ S +S T +T + + + N Q
Sbjct: 58 CWGTQELSCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPVMNITQ 117
Query: 662 VSNTMILYVK 671
V+ ++++ +
Sbjct: 118 VNGSLLVILH 127
Score = 39.0 bits (90), Expect = 0.003
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 2/82 (2%)
Query: 53 TLTLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEI--LVYCVLYKREGSERERAYNATAR 110
+ + S+ I+ P + + L+Y V E+E+ A
Sbjct: 112 VMNITQVNGSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKEQKVYEGAH 171
Query: 111 VEAIIQGLHPNTSYTFRVVAYN 132
I+ L P++SY Y
Sbjct: 172 RAVEIEALTPHSSYCVVAEIYQ 193
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain,
structural genomics., NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 68.2 bits (167), Expect = 5e-14
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Query: 553 SAPRDLTVVSKEGDPSLVNLNWQPPKSANGQ-ISGYTILYSSDPNTDQWIEESVVGDKMS 611
P+ + + G+ V L W PPK I+GYTI + D + +W + S
Sbjct: 19 GPPQIVKIEDVWGEN--VALTWTPPKDDGNAAITGYTIQKA-DKKSMEWFTVIEHYHRTS 75
Query: 612 TNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTT 646
+ L G YYF++ + N G S ++ +
Sbjct: 76 ATITELVIGNEYYFRVFSENMCGLSEDATMTKESA 110
Score = 65.8 bits (161), Expect = 3e-13
Identities = 29/119 (24%), Positives = 40/119 (33%), Gaps = 8/119 (6%)
Query: 43 STGSIEAINE--TLTLPSAPQSVSAIMVGPRSVALRWLPPTLPRG-EILVYCVLYKREGS 99
S+GS A + + P PQ V V +VAL W PP I Y + + S
Sbjct: 2 SSGSSGASIDIQIIDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKS 61
Query: 100 ER-ERAYNATARVEAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPP 157
R A I L Y FRV + N G ++ T+ +
Sbjct: 62 MEWFTVIEHYHRTSATITELVIGNEYYFRVFSENMCGLSEDATM----TKESAVIARDG 116
Score = 49.7 bits (119), Expect = 1e-07
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 14/104 (13%)
Query: 232 AGTTSQELSVQTLSDKPSEPP---------ANSITVRWQPPSRRGQNGIITGYKLRYKKK 282
+G++ + +Q + D+P PP ++ + W PP G N ITGY ++
Sbjct: 3 SGSSGASIDIQII-DRPG-PPQIVKIEDVWGENVALTWTPPKDDG-NAAITGYTIQKA-- 57
Query: 283 DVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGP 326
D K + TV R IT L Y ++++ N+ G
Sbjct: 58 DKKSMEWFTVIEHYHRTSATITELVIGNEYYFRVFSENMCGLSE 101
Score = 49.7 bits (119), Expect = 2e-07
Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 3/102 (2%)
Query: 153 VPSPPLNVNIPVVGTSSLLVTWEKPTVTNG-EIKHYTLYYLEEDTSVERHVVT--PQLSY 209
P PP V I V ++ +TW P I YT+ ++ + V+ + S
Sbjct: 17 RPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRTSA 76
Query: 210 ELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEP 251
+T L Y V + N G + + + +
Sbjct: 77 TITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARDGKI 118
Score = 39.3 bits (92), Expect = 7e-04
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Query: 345 VPDIPASLKARPGGPSSIIVSWTPPA-DQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSD 403
P P +K ++ ++WTPP D + + G+T+ E+ I + S
Sbjct: 17 RPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRTSA 76
Query: 404 EITGLEPNSDYVISLRAFNEMGDGP 428
IT L ++Y + + N G
Sbjct: 77 TITELVIGNEYYFRVFSENMCGLSE 101
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein,
adnect antitumor, drug, engineered binding protein; HET:
NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Length = 114
Score = 68.0 bits (166), Expect = 5e-14
Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 14/109 (12%)
Query: 153 VPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVT---PQLSY 209
V P ++ + +SLL++W+ G ++Y + Y E + T P +
Sbjct: 3 VSDVPRDLEVVAATPTSLLISWDSG---RGSYQYYRITYGETGGNSPVQEFTVPGPVHTA 59
Query: 210 ELTGLSHFTLYSIWVVAHNGNGAGTTSQE--------LSVQTLSDKPSE 250
++GL Y+I V A + ++ +T DKPS+
Sbjct: 60 TISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYRTEIDKPSQ 108
Score = 60.3 bits (146), Expect = 2e-11
Identities = 23/113 (20%), Positives = 37/113 (32%), Gaps = 7/113 (6%)
Query: 553 SAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMST 612
PRDL VV+ P+ + ++W G Y I Y E +V G +
Sbjct: 5 DVPRDLEVVAA--TPTSLLISWDSG---RGSYQYYRITYGETGGNSPVQEFTVPGPVHTA 59
Query: 613 NVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASDMQEAGGI--PNSNQVS 663
+ GL+PG Y + A + + I P+ +
Sbjct: 60 TISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYRTEIDKPSQHHHH 112
Score = 58.4 bits (141), Expect = 1e-10
Identities = 16/101 (15%), Positives = 30/101 (29%), Gaps = 7/101 (6%)
Query: 253 ANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTY 312
S+ + W G Y++ Y + + T G I+GL Y
Sbjct: 17 PTSLLISWDSG-----RGSYQYYRITYGETG-GNSPVQEFTVPGPVHTATISGLKPGVDY 70
Query: 313 QIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLK 353
I ++A+ + + + T D P+
Sbjct: 71 TITVYAVTDHKPHADGPH-TYHESPISINYRTEIDKPSQHH 110
Score = 56.5 bits (136), Expect = 6e-10
Identities = 19/111 (17%), Positives = 30/111 (27%), Gaps = 11/111 (9%)
Query: 54 LTLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYK---REGSERERAYNATAR 110
+ + P+ + + P S+ + W G Y + Y +E
Sbjct: 1 MGVSDVPRDLEVVAATPTSLLISWDSGR---GSYQYYRITYGETGGNSPVQEFTVPGPVH 57
Query: 111 VEAIIQGLHPNTSYTFRVVAYNALGAGLASSA----LPVKTEPEDHVPSPP 157
A I GL P YT V A P+ + P
Sbjct: 58 -TATISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYRTEIDKPS 107
Score = 53.8 bits (129), Expect = 5e-09
Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 345 VPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQI-LDVKQRSD 403
V D+P L+ P+S+++SW + + + +G+ + V++ + +
Sbjct: 3 VSDVPRDLEVVAATPTSLLISWDSGRGS---YQYYRITYGETGGNSPVQEFTVPGPVHTA 59
Query: 404 EITGLEPNSDYVISLRAFNEMGDGPQKYESLRTR 437
I+GL+P DY I++ A + +
Sbjct: 60 TISGLKPGVDYTITVYAVTDHKPHADGPHTYHES 93
Score = 46.8 bits (111), Expect = 1e-06
Identities = 23/119 (19%), Positives = 36/119 (30%), Gaps = 21/119 (17%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANI 509
P L+ +P S+ ISW ++Y + Y G S + + +
Sbjct: 6 VPRDLEVVAATPTSLLISW---------DSGRGSYQYYRITYGETGGNSPVQEFTVPGPV 56
Query: 510 TSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPAS--------APRDLTV 560
+ I+ L+P Y TV V K T +P S P
Sbjct: 57 HTATISGLKPGVDYTITVYAVTDHKPHADG----PHTYHESPISINYRTEIDKPSQHHH 111
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III
module, beta-sheet sandwich, cell membrane,
glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Length = 114
Score = 67.9 bits (166), Expect = 5e-14
Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 3/98 (3%)
Query: 550 APASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDK 609
S P ++ + L+ I Y + Y S DQW+E+ V G+K
Sbjct: 7 REPSPP---SIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNK 63
Query: 610 MSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTA 647
+ L+ Y +I A N G S +
Sbjct: 64 DHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPP 101
Score = 61.0 bits (148), Expect = 2e-11
Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 4/97 (4%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNAT--ARVEAI 114
PS P + +S L IL Y V Y+ + E + + I
Sbjct: 9 PSPPS-IHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHII 67
Query: 115 IQGLHPNTSYTFRVVAYNALGAGLASSA-LPVKTEPE 150
++ L Y ++ A N LG + + +P
Sbjct: 68 LEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPN 104
Score = 57.5 bits (139), Expect = 2e-10
Identities = 19/110 (17%), Positives = 29/110 (26%), Gaps = 5/110 (4%)
Query: 146 KTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVT- 204
+ E PSPP P G S ++ K I Y + Y +D +
Sbjct: 1 EAEASMREPSPPSIHGQPSSGKS-FKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKV 59
Query: 205 --PQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPP 252
+ L L Y + + A N G +
Sbjct: 60 QGNKDHIILEHLQWTMGYEVQITAANRLGYSEPT-VYEFSMPPKPNIIKD 108
Score = 53.3 bits (128), Expect = 7e-09
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Query: 253 ANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTY 312
S + G I Y ++Y+ KD + G++ ++ L + Y
Sbjct: 21 GKSFKLSITKQDDGGAP--ILEYIVKYRSKDKEDQW-LEKKVQGNKDHIILEHLQWTMGY 77
Query: 313 QIKLWAMNVNGSGPATD 329
++++ A N G T
Sbjct: 78 EVQITAANRLGYSEPTV 94
Score = 52.5 bits (126), Expect = 1e-08
Identities = 16/100 (16%), Positives = 36/100 (36%), Gaps = 2/100 (2%)
Query: 343 FTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGW-GKGVPDEFVKQILDVKQR 401
P P S+ +P S +S T D + + + + K D+++++ + +
Sbjct: 6 MREPSPP-SIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKD 64
Query: 402 SDEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPP 441
+ L+ Y + + A N +G +P
Sbjct: 65 HIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPN 104
Score = 42.5 bits (100), Expect = 4e-05
Identities = 20/115 (17%), Positives = 34/115 (29%), Gaps = 15/115 (13%)
Query: 441 PPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNP 500
P P + P S S ++S T D G Y+V+Y
Sbjct: 8 EPSPPSIHGQPS-------SGKSFKLSI---TKQDD---GGAPILEYIVKYRSKDKEDQW 54
Query: 501 RYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAP 555
K + N + + L+ + YE + SE ++ + P
Sbjct: 55 LEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMP--PKPNIIK 107
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 121
Score = 68.0 bits (166), Expect = 7e-14
Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 5/104 (4%)
Query: 544 NTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEE 603
N + + + P L VV+ P+ + ++W P + Y I Y E
Sbjct: 21 NLYFQGSVSDVPTKLEVVAA--TPTSLLISWDAP---AVTVRYYRITYGETGGNSPVQEF 75
Query: 604 SVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTA 647
+V G K + + GL+PG Y + A S
Sbjct: 76 TVPGSKSTATISGLKPGVDYTITVYAVTGLRLMLAGSKPISINY 119
Score = 63.0 bits (153), Expect = 4e-12
Identities = 19/119 (15%), Positives = 38/119 (31%), Gaps = 12/119 (10%)
Query: 123 SYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNG 182
+ Y + V P + + +SLL++W+ P
Sbjct: 4 HHHHHSSDYKDDDDKGENLYFQ------GSVSDVPTKLEVVAATPTSLLISWDAP---AV 54
Query: 183 EIKHYTLYYLEEDTSVERHVVT---PQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQE 238
+++Y + Y E + T + + ++GL Y+I V A G +
Sbjct: 55 TVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGLRLMLAGSK 113
Score = 62.6 bits (152), Expect = 5e-12
Identities = 21/106 (19%), Positives = 33/106 (31%), Gaps = 1/106 (0%)
Query: 37 ASPLDTSTGSIEAINETLTLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKR 96
+S E + ++ P + + P S+ + W P + +
Sbjct: 9 SSDYKDDDDKGENLYFQGSVSDVPTKLEVVAATPTSLLISWDAPAVTVRYYRITYGETGG 68
Query: 97 EGSERERAYNATARVEAIIQGLHPNTSYTFRVVAYNALGAGLASSA 142
+E + A I GL P YT V A L LA S
Sbjct: 69 NSPVQEFTVPGSKS-TATISGLKPGVDYTITVYAVTGLRLMLAGSK 113
Score = 56.1 bits (135), Expect = 8e-10
Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 344 TVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQI-LDVKQRS 402
+V D+P L+ P+S+++SW PA VR + + +G+ + V++ + + +
Sbjct: 27 SVSDVPTKLEVVAATPTSLLISWDAPAVT---VRYYRITYGETGGNSPVQEFTVPGSKST 83
Query: 403 DEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTR 437
I+GL+P DY I++ A + + +
Sbjct: 84 ATISGLKPGVDYTITVYAVTGLRLMLAGSKPISIN 118
Score = 54.1 bits (130), Expect = 4e-09
Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 12/104 (11%)
Query: 230 NGAGTTSQELSVQ-TLSDKP-----SEPPANSITVRWQPPSRRGQNGIITGYKLRYKKKD 283
+ L Q ++SD P S+ + W P + Y++ Y +
Sbjct: 13 KDDDDKGENLYFQGSVSDVPTKLEVVAATPTSLLISWDAP-----AVTVRYYRITYGETG 67
Query: 284 VKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPA 327
+ T G + I+GL Y I ++A+ A
Sbjct: 68 -GNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGLRLMLA 110
Score = 49.1 bits (117), Expect = 2e-07
Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 9/109 (8%)
Query: 431 YESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVR 490
Y+ + E V P L+ +P S+ ISW R+Y +
Sbjct: 12 YKDDDDKGENLYFQGSVSDVPTKLEVVAATPTSLLISW---------DAPAVTVRYYRIT 62
Query: 491 YTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWS 539
Y G S + + + ++ I+ L+P Y TV V +
Sbjct: 63 YGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGLRLMLAG 111
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative
splicing, cell adhesion, coiled coil, EGF-like domain,
extracellular matrix; 2.40A {Homo sapiens}
Length = 100
Score = 67.0 bits (164), Expect = 7e-14
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 6/96 (6%)
Query: 553 SAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMST 612
P ++ V + + + WQPP I G + + + + S
Sbjct: 3 QPPFNIKVTNI--TLTTAVVTWQPPIL---PIEGILVTFGRKNDPSDETTVDLTSSITSL 57
Query: 613 NVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTAS 648
+ LEP Y +I ARN SP ST T+TT S
Sbjct: 58 TLTNLEPNTTYEIRIVARNGQQYSPPVST-TFTTGS 92
Score = 63.6 bits (155), Expect = 1e-12
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 6/97 (6%)
Query: 58 SAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNA--TARVEAII 115
P ++ + + + W PP I V + R+ + ++ +
Sbjct: 3 QPPFNIKVTNITLTTAVVTWQPP---ILPIEGILVTFGRKNDPSDETTVDLTSSITSLTL 59
Query: 116 QGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDH 152
L PNT+Y R+VA N S T +H
Sbjct: 60 TNLEPNTTYEIRIVARNGQQYSPPVST-TFTTGSLEH 95
Score = 63.2 bits (154), Expect = 2e-12
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 7/94 (7%)
Query: 155 SPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTP---QLSYEL 211
PP N+ + + ++ +VTW+ P I+ + + ++ + V S L
Sbjct: 3 QPPFNIKVTNITLTTAVVTWQPP---ILPIEGILVTFGRKNDPSDETTVDLTSSITSLTL 59
Query: 212 TGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLS 245
T L T Y I +VA NG + T S
Sbjct: 60 TNLEPNTTYEIRIVARNGQQYSPPVST-TFTTGS 92
Score = 61.6 bits (150), Expect = 7e-12
Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 4/98 (4%)
Query: 347 DIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWG-KGVPDEFVKQILDVKQRSDEI 405
P ++K ++ +V+W PP + G + +G K P + L S +
Sbjct: 3 QPPFNIKVTNITLTTAVVTWQPPILP---IEGILVTFGRKNDPSDETTVDLTSSITSLTL 59
Query: 406 TGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQ 443
T LEPN+ Y I + A N P + T +
Sbjct: 60 TNLEPNTTYEIRIVARNGQQYSPPVSTTFTTGSLEHHH 97
Score = 60.1 bits (146), Expect = 2e-11
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 253 ANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTY 312
+ V WQPP I G + + +K+ D+ TV +T L +TTY
Sbjct: 15 LTTAVVTWQPPI-----LPIEGILVTFGRKNDPSDE-TTVDLTSSITSLTLTNLEPNTTY 68
Query: 313 QIKLWAMNVNGSGPAT 328
+I++ A N P
Sbjct: 69 EIRIVARNGQQYSPPV 84
Score = 50.1 bits (120), Expect = 7e-08
Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 9/99 (9%)
Query: 447 VLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYIN 506
+L PP +K ++ + ++W Q LV + S+ +
Sbjct: 1 MLQPPFNIKVTNITLTTAVVTW---------QPPILPIEGILVTFGRKNDPSDETTVDLT 51
Query: 507 ANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNT 545
++ITS+ + +L P+T YE + ++ S T
Sbjct: 52 SSITSLTLTNLEPNTTYEIRIVARNGQQYSPPVSTTFTT 90
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW-
type protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 110
Score = 67.0 bits (164), Expect = 1e-13
Identities = 26/107 (24%), Positives = 39/107 (36%), Gaps = 8/107 (7%)
Query: 55 TLPSAPQSVSAIMVGPRSVALRWLPPTLPRG-EILVYCVLYKREGSERERAYNA--TARV 111
+ S P ++ V +V +RW PP + Y + Y EG+E N +
Sbjct: 6 SGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKT 65
Query: 112 EAIIQGLHPNTSYTFRVVAYNALGAGLASSAL-PVKTEPEDHVPSPP 157
+ I GL + RV A NA GA P+ + P
Sbjct: 66 KFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKE----SGPS 108
Score = 66.2 bits (162), Expect = 2e-13
Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 3/105 (2%)
Query: 546 TQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANG-QISGYTILYSSDPNTDQWIEES 604
+ ++ S P LTV S + V + W+PP + GY + Y + D +
Sbjct: 2 SSGSSGTSPPTLLTVDSV--TDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANK 59
Query: 605 VVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649
+ DK + GL + ++KA N+AG+S +
Sbjct: 60 DLIDKTKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKE 104
Score = 55.1 bits (133), Expect = 2e-09
Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 5/105 (4%)
Query: 153 VPSPPLNVNIPVVGTSSLLVTWEKPTVTNG-EIKHYTLYYLEEDTSVERHVVT---PQLS 208
SPP + + V +++ + W P + Y L Y E T +
Sbjct: 7 GTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTK 66
Query: 209 YELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPA 253
+ +TGL + V A N GA + +
Sbjct: 67 FTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKE-SGPSSG 110
Score = 45.0 bits (107), Expect = 5e-06
Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 16/93 (17%)
Query: 247 KPSEPP------------ANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTT 294
S ++T+RW+PP G + GY L Y + +
Sbjct: 3 SGSSGTSPPTLLTVDSVTDTTVTMRWRPPDHIG-AAGLDGYVLEYCFEG--TEDWIVANK 59
Query: 295 AG-DRRLYVITGLNKSTTYQIKLWAMNVNGSGP 326
D+ + ITGL +++ A+N G+
Sbjct: 60 DLIDKTKFTITGLPTDAKIFVRVKAVNAAGASE 92
Score = 38.5 bits (90), Expect = 0.001
Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 4/105 (3%)
Query: 342 EFTVPDIPASLKARPGGPSSIIVSWTPPADQ-SIMVRGFTL-GWGKGVPDEFVKQILDVK 399
+ P L +++ + W PP + + G+ L +G D V +
Sbjct: 4 GSSGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLID 63
Query: 400 QRSDEITGLEPNSDYVISLRAFNEMGDGPQKYES--LRTRNEPPP 442
+ ITGL ++ + ++A N G KY S + + P
Sbjct: 64 KTKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKESGPS 108
Score = 31.9 bits (73), Expect = 0.17
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 510 TSVQINDLRPSTQYEFTVKVVRAKKESEWSMIV-LNTTQEAAPASA 554
T I L + VK V A SE +E+ P+S
Sbjct: 65 TKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKESGPSSG 110
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK
protein, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 120
Score = 66.9 bits (163), Expect = 1e-13
Identities = 25/123 (20%), Positives = 41/123 (33%), Gaps = 11/123 (8%)
Query: 43 STGSIEAINETLTLPSAPQSVSAIMVGPRSVALRWLPPTLPRGE-ILVYCVLYKREGSER 101
S+GS + S P V S+ L W + + + + E +
Sbjct: 2 SSGSSGMEPHKVVPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDP 61
Query: 102 E-----RAYNATARVEAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSP 156
+ Y A +++GL P T Y FR+ + G S + V T S
Sbjct: 62 KMHSYGVIYTGYAT-RHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTR----ESG 116
Query: 157 PLN 159
P +
Sbjct: 117 PSS 119
Score = 63.1 bits (153), Expect = 3e-12
Identities = 24/109 (22%), Positives = 37/109 (33%), Gaps = 7/109 (6%)
Query: 545 TTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQ-ISGYTILYS---SDPNTDQW 600
+ P S P V + L W + Q + +S DP +
Sbjct: 9 EPHKVVPLSKPHPPVVGKVTHHS--IELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSY 66
Query: 601 IEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649
G V GLEP +Y F++K + +G YS V+ T +
Sbjct: 67 -GVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRE 114
Score = 53.8 bits (129), Expect = 6e-09
Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 8/113 (7%)
Query: 229 GNGAGTTSQELSVQTLSDKPSEPP-----ANSITVRWQPPSRRGQNGIITGYKLRYK-KK 282
G+ + + V KP P +SI + W + + G LR+ ++
Sbjct: 1 GSSGSSGMEPHKV-VPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQG-PQEQWLRFSIEE 58
Query: 283 DVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAET 335
+ K V G +V+ GL T Y+ +L + +G + S T
Sbjct: 59 EDPKMHSYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVAT 111
Score = 53.0 bits (127), Expect = 1e-08
Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 10/120 (8%)
Query: 135 GAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGE-IKHYTLYYLE 193
G+ +S P K P P PP+ V S+ + W+ + + L +
Sbjct: 1 GSSGSSGMEPHKVVPLS-KPHPPVVGK---VTHHSIELYWDLEQKEKRQGPQEQWLRFSI 56
Query: 194 EDTSVERH-----VVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKP 248
E+ + H + + GL TLY + + +G S +SV T +
Sbjct: 57 EEEDPKMHSYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRESG 116
Score = 43.8 bits (103), Expect = 2e-05
Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 19/132 (14%)
Query: 427 GPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRH 486
G E + P P V ++ +S+ + W + +
Sbjct: 4 GSSGMEPHKVVPLSKPHPPVVG---------KVTHHSIELYWDLEQKEK-----RQGPQE 49
Query: 487 YLVRYTHLLGASNPRYKYI---NANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIV- 542
+R++ + + Y T + L P T Y+F +KV E E+S +V
Sbjct: 50 QWLRFS-IEEEDPKMHSYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVS 108
Query: 543 LNTTQEAAPASA 554
+ TT+E+ P+S
Sbjct: 109 VATTRESGPSSG 120
Score = 43.0 bits (101), Expect = 3e-05
Identities = 16/108 (14%), Positives = 28/108 (25%), Gaps = 5/108 (4%)
Query: 342 EFTVPDIPASLKARPGGPSSIIVSWTPPADQ--SIMVRGFT--LGWGKGVPDEFVKQILD 397
+ P SI + W + + + I
Sbjct: 12 KVVPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYT 71
Query: 398 VKQRSDEITGLEPNSDYVISLRAFNEMGDG-PQKYESLRTRNEPPPQA 444
+ GLEP + Y L+ + G+ S+ T E P +
Sbjct: 72 GYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRESGPSS 119
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 71.5 bits (174), Expect = 1e-13
Identities = 47/293 (16%), Positives = 86/293 (29%), Gaps = 33/293 (11%)
Query: 279 YKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQ 338
++ + G + + +IT + + T ++N S D
Sbjct: 39 WRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQILDQ-------V 91
Query: 339 DLGEFTVPDIPASLKA-RPGGPSSIIVSWTPPADQSI-------MVRGFTLGWGKGVPDE 390
+L P IP +L SS+I W P + + + +G
Sbjct: 92 ELRAGYPPAIPHNLSCLMNLTTSSLICQWEPGPETHLPTSFTLKSFKSRGNCQTQGDSIL 151
Query: 391 FVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLIP 450
S L + I ++A N +G L + + P +
Sbjct: 152 DCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTM 211
Query: 451 PMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLG-ASNPRYKYINANI 509
++ +++SW Q +R+ G AS +
Sbjct: 212 DPSPEAAPPQAGCLQLSWEPWQPGLHINQK------CELRHKPQRGEASWALVGPLPLEA 265
Query: 510 TSVQINDLRPSTQYEFTVKVVRAKKE------SEWSMIVLNTTQEAAPASAPR 556
++ L P+T Y + R + S+WS + T E A APR
Sbjct: 266 LQYELCGLLPATAYTLQI---RCIRWPLPGHWSDWSPSLELRTTERAA--APR 313
Score = 70.3 bits (171), Expect = 3e-13
Identities = 26/197 (13%), Positives = 54/197 (27%), Gaps = 13/197 (6%)
Query: 463 SMRISWI---DTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRP 519
S+ W +T LP F + R + + S+ L
Sbjct: 115 SLICQWEPGPETHLPTSFTLKSFKSRGNC---QTQGDSILDCVPKDGQSHCSIPRKHLLL 171
Query: 520 STQYEFTVKVVRAKKESEWS---MIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQP 576
V+ A S + ++ + P D + + + L+W+P
Sbjct: 172 YQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEP 231
Query: 577 PKSANGQISGYTILYSSDPNTDQWIEESVVGDK-MSTNVRGLEPGRIYYFKIKARNSAGS 635
+ + + W + + + + GL P Y +I+
Sbjct: 232 WQPGLHINQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLP 291
Query: 636 ---SPYSSTVTWTTASD 649
S +S ++ T
Sbjct: 292 GHWSDWSPSLELRTTER 308
Score = 68.0 bits (165), Expect = 2e-12
Identities = 44/270 (16%), Positives = 89/270 (32%), Gaps = 40/270 (14%)
Query: 92 VLYKREG----SERERAYNATARVEAI-IQGLHPNTSYTFRVVAYNALGAGLASSALPVK 146
+L++ R++ + + I + L+ ++ + + L L
Sbjct: 37 ILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQILDQVELRAG 96
Query: 147 TEPEDHVPSPPLNVNIPVVGT-SSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTP 205
+ P+ P N++ + T SSL+ WE T+ +TL + + + +
Sbjct: 97 -----YPPAIPHNLSCLMNLTTSSLICQWEPGPETHLPT-SFTLKSFKSRGNCQTQGDSI 150
Query: 206 QLSYELTG----------LSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPAN- 254
G L + IWV A N G + S +L + + EPP
Sbjct: 151 LDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGT-SMSPQLCLDPMDVVKLEPPMLR 209
Query: 255 --------------SITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRL 300
+ + W+P +LR+K + + +
Sbjct: 210 TMDPSPEAAPPQAGCLQLSWEPWQPGLHINQK--CELRHKPQRGEASWALVGPLPLEALQ 267
Query: 301 YVITGLNKSTTYQIKLWAMNVNGSGPATDW 330
Y + GL +T Y +++ + G +DW
Sbjct: 268 YELCGLLPATAYTLQIRCIRWPLPGHWSDW 297
Score = 58.8 bits (141), Expect = 2e-09
Identities = 40/302 (13%), Positives = 81/302 (26%), Gaps = 39/302 (12%)
Query: 149 PEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVT---NGEIKHYTLYYLEEDTSVERHVVTP 205
+ + + + +P + E++ D + E + P
Sbjct: 7 VSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLP 66
Query: 206 QLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKP------SEPPANSITVR 259
L++ LS + + EL P +S+ +
Sbjct: 67 HLNHTQAFLS-------CSLNWGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQ 119
Query: 260 WQPPSRRGQNGIITGYKLRYKKKDVKK-----DKGETVTTAGDRRLYV-ITGLNKSTTYQ 313
W+P + + T + L+ K + V G + L
Sbjct: 120 WEPGP---ETHLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMG 176
Query: 314 IKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARP------GGPSSIIVSWT 367
I + A N G+ + D + + P P + +SW
Sbjct: 177 IWVQAENALGTS------MSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWE 230
Query: 368 PPADQSIMVRGFTLGW--GKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMG 425
P + + L +G + L ++ E+ GL P + Y + +R
Sbjct: 231 PWQPGLHINQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPL 290
Query: 426 DG 427
G
Sbjct: 291 PG 292
Score = 54.6 bits (130), Expect = 5e-08
Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 8/108 (7%)
Query: 55 TLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSE---RERAYNATARV 111
L + S A + L W P + +K + E +
Sbjct: 207 MLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLPLEAL 266
Query: 112 EAIIQGLHPNTSYTFRVVAYNALGAGLA---SSALPVKTEPEDHVPSP 156
+ + GL P T+YT ++ G S +L ++T E +P
Sbjct: 267 QYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELRT-TER-AAAP 312
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 121
Score = 66.6 bits (163), Expect = 2e-13
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 4/102 (3%)
Query: 550 APASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIE--ESVVG 607
+P AP T+ + V + W P + I + + Y WI ++
Sbjct: 16 SPPEAPDRPTISTASETS--VYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPP 73
Query: 608 DKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649
++S + GLE G Y F+++A N G S S+ S
Sbjct: 74 SRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSG 115
Score = 65.5 bits (160), Expect = 4e-13
Identities = 29/119 (24%), Positives = 42/119 (35%), Gaps = 7/119 (5%)
Query: 43 STGSIEAINETLTLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGS--- 99
+ + + L+ P AP + SV + W+P I + V YK+
Sbjct: 4 GSSGSQPDHGRLSPPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGD 63
Query: 100 -ERERAYNATARVEAIIQGLHPNTSYTFRVVAYNALGAGLASSA-LPVKTEPEDHVPSP 156
+ +R+ I GL SY FRV A N LG S+ P PS
Sbjct: 64 WILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSGS--GPSS 120
Score = 53.1 bits (128), Expect = 9e-09
Identities = 27/122 (22%), Positives = 40/122 (32%), Gaps = 8/122 (6%)
Query: 135 GAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEE 194
G+ +S + P P P I +S+ VTW I+ + + Y +
Sbjct: 1 GSSGSSGSQPDHGRLS--PPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKL 58
Query: 195 DTSVERHVVT-----PQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQE-LSVQTLSDKP 248
+ + T +LS E+TGL Y V A N G S P
Sbjct: 59 KKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSGSGP 118
Query: 249 SE 250
S
Sbjct: 119 SS 120
Score = 49.7 bits (119), Expect = 2e-07
Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 11/105 (10%)
Query: 231 GAGTTSQELSVQTLSDKPSEPPA--------NSITVRWQPPSRRGQNGIITGYKLRYKKK 282
G+ +S P P S+ V W P G I +++ YKK
Sbjct: 1 GSSGSSGSQPDHGRLSPPEAPDRPTISTASETSVYVTWIPRGNGGFP--IQSFRVEYKKL 58
Query: 283 DVKKD-KGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGP 326
D T R ITGL K +Y+ ++ A+N+ G
Sbjct: 59 KKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESE 103
Score = 48.5 bits (116), Expect = 4e-07
Identities = 28/127 (22%), Positives = 44/127 (34%), Gaps = 11/127 (8%)
Query: 323 GSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTL- 381
GS ++ D G + P+ P +S+ V+W P + ++ F +
Sbjct: 1 GSSGSSG------SQPDHGRLSPPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVE 54
Query: 382 -GWGKGVPD-EFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYES--LRTR 437
K V D + + S EITGLE Y +RA N +G+ S
Sbjct: 55 YKKLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVS 114
Query: 438 NEPPPQA 444
P
Sbjct: 115 GSGPSSG 121
Score = 33.1 bits (76), Expect = 0.10
Identities = 26/133 (19%), Positives = 40/133 (30%), Gaps = 15/133 (11%)
Query: 425 GDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEG 484
G PP+ P S S+ ++WI G
Sbjct: 1 GSSGSSGSQPDHGRLSPPE------APDRPTISTASETSVYVTWIPR------GNGGFPI 48
Query: 485 RHYLVRYTHLLGASN--PRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIV 542
+ + V Y L + I + SV+I L Y+F V+ + ESE S
Sbjct: 49 QSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPS 108
Query: 543 -LNTTQEAAPASA 554
+ P+S
Sbjct: 109 RPYVVSGSGPSSG 121
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 66.7 bits (163), Expect = 2e-13
Identities = 16/106 (15%), Positives = 33/106 (31%), Gaps = 5/106 (4%)
Query: 153 VPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTP-QLSYEL 211
P P + + ++ W+ P + Y + + + Y L
Sbjct: 7 GPDGPTQLRALNLTEGFAVLHWKPP---QNPVDTYDIQVTAPGAPPLQAETPGSAVDYPL 63
Query: 212 TGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPANSIT 257
L T Y+ V G + + ++ T + P + A +T
Sbjct: 64 HDLVLHTNYTATVRGLRGPNLTSPAS-ITFTTGLEAPRDLEAKEVT 108
Score = 64.8 bits (158), Expect = 6e-13
Identities = 22/115 (19%), Positives = 38/115 (33%), Gaps = 9/115 (7%)
Query: 55 TLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAI 114
+ P P + A+ + L W PP + Y + G+ +A + V+
Sbjct: 6 SGPDGPTQLRALNLTEGFAVLHWKPPQ---NPVDTYDIQVTAPGAPPLQAETPGSAVDYP 62
Query: 115 IQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSS 169
+ L +T+YT V +S T E P ++ V S
Sbjct: 63 LHDLVLHTNYTATVRGLRGPNLTSPASIT-FTTGLE-----APRDLEAKEVTPSG 111
Score = 58.6 bits (142), Expect = 1e-10
Identities = 13/96 (13%), Positives = 28/96 (29%), Gaps = 7/96 (7%)
Query: 553 SAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMST 612
P L ++ L+W+PP + Y I ++ ++ G +
Sbjct: 9 DGPTQLRALNLT--EGFAVLHWKPP---QNPVDTYDIQVTAP--GAPPLQAETPGSAVDY 61
Query: 613 NVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTAS 648
+ L Y ++ + +S T
Sbjct: 62 PLHDLVLHTNYTATVRGLRGPNLTSPASITFTTGLE 97
Score = 55.9 bits (135), Expect = 9e-10
Identities = 22/128 (17%), Positives = 39/128 (30%), Gaps = 23/128 (17%)
Query: 240 SVQTLSDKPSEPPA-----NSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTT 294
S + D P++ A + W+PP + Y ++ T
Sbjct: 3 SGSSGPDGPTQLRALNLTEGFAVLHWKPP-----QNPVDTYDIQVTAPG---APPLQAET 54
Query: 295 AGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKA 354
G Y + L T Y + + ++ TF+ T + P L+A
Sbjct: 55 PGSAVDYPLHDLVLHTNYTATVRGLRGPNLTSP----ASITFT------TGLEAPRDLEA 104
Query: 355 RPGGPSSI 362
+ PS
Sbjct: 105 KEVTPSGP 112
Score = 55.1 bits (133), Expect = 2e-09
Identities = 15/99 (15%), Positives = 29/99 (29%), Gaps = 4/99 (4%)
Query: 344 TVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSD 403
+ PD P L+A ++ W PP + V + +
Sbjct: 6 SGPDGPTQLRALNLTEGFAVLHWKPPQNP---VDTYDIQVTAPGAPPLQ-AETPGSAVDY 61
Query: 404 EITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPP 442
+ L +++Y ++R + T E P
Sbjct: 62 PLHDLVLHTNYTATVRGLRGPNLTSPASITFTTGLEAPR 100
Score = 52.4 bits (126), Expect = 2e-08
Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 16/112 (14%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANI 509
P L++ L+ + W + Y ++ T + P +
Sbjct: 10 GPTQLRALNLTEGFAVLHW---------KPPQNPVDTYDIQVTA--PGAPPLQAETPGSA 58
Query: 510 TSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVV 561
++DL T Y TV+ +R + + I T APRDL
Sbjct: 59 VDYPLHDLVLHTNYTATVRGLRGPNLTSPASITFTT-----GLEAPRDLEAK 105
>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 137
Score = 66.9 bits (163), Expect = 2e-13
Identities = 25/134 (18%), Positives = 48/134 (35%), Gaps = 11/134 (8%)
Query: 137 GLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNG---------EIKHY 187
G + S+ +T+ + + S + + ++++TW P+ E+ Y
Sbjct: 1 GSSGSSGDEETKAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGY 60
Query: 188 TLYYLE--EDTSVERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLS 245
+ +D + V + + L L Y V A + GT S+ TLS
Sbjct: 61 EVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLS 120
Query: 246 DKPSEPPANSITVR 259
+P P I+
Sbjct: 121 CEPDIPNPPRISGP 134
Score = 63.9 bits (155), Expect = 2e-12
Identities = 29/125 (23%), Positives = 39/125 (31%), Gaps = 14/125 (11%)
Query: 55 TLPSAPQSVSAIMVGPRSVALRWLPPTLPRG---------EILVYCVLYKREGSE-RERA 104
L S A + R+V L W PP+ E+ Y VL G + + ++
Sbjct: 16 ALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKS 75
Query: 105 YNATARVEAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPV 164
+ L P Y +V A G S A T P P I
Sbjct: 76 VYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSC--EPDIPNPPRI-- 131
Query: 165 VGTSS 169
G SS
Sbjct: 132 SGPSS 136
Score = 59.2 bits (143), Expect = 1e-10
Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 13/114 (11%)
Query: 545 TTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANG---------QISGYTILYSSDP 595
EA S + V L W PP S ++ GY +L S
Sbjct: 12 KAFEALL-SNIVKPVASDIQ--ARTVVLTWSPPSSLINGETDESSVPELYGYEVLIS-ST 67
Query: 596 NTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649
D + VG++ + + L+P Y+ K++A ++ S +TT S
Sbjct: 68 GKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSC 121
Score = 57.3 bits (138), Expect = 4e-10
Identities = 24/135 (17%), Positives = 41/135 (30%), Gaps = 23/135 (17%)
Query: 231 GAGTTSQELSVQTLSDKPSEPP--------ANSITVRWQPPSRRGQNGI-------ITGY 275
G+ +S + + S A ++ + W PPS + GY
Sbjct: 1 GSSGSSGDEETKAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGY 60
Query: 276 KLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAET 335
++ KD G+ + L + Y K+ A + G ++ T
Sbjct: 61 EVLISSTG--KDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTT 118
Query: 336 FSQDLGEFTVPDIPA 350
S PDIP
Sbjct: 119 LS------CEPDIPN 127
Score = 50.8 bits (121), Expect = 1e-07
Identities = 23/143 (16%), Positives = 49/143 (34%), Gaps = 18/143 (12%)
Query: 323 GSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIM------- 375
GS ++ + F + A +++++W+PP+
Sbjct: 1 GSSGSSGDEETKAFE------ALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSV 54
Query: 376 --VRGFTLGWGKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQ-KYE 432
+ G+ + D K + ++ + + L+P DY ++A G + E
Sbjct: 55 PELYGYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAE 114
Query: 433 SLRTRNEPP--PQAPKVLIPPMG 453
T + P P P++ P G
Sbjct: 115 IFTTLSCEPDIPNPPRISGPSSG 137
Score = 46.5 bits (110), Expect = 3e-06
Identities = 21/143 (14%), Positives = 44/143 (30%), Gaps = 13/143 (9%)
Query: 425 GDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISW---IDTTLPDQFQQHG 481
G + E + S++ ++ ++W + +
Sbjct: 1 GSSGSSGDEETKAFEALLSNIVKPVA-----SDI-QARTVVLTWSPPSSLINGETDESSV 54
Query: 482 EEGRHYLVRYTHLLGASNPRYKYI-NANITSVQINDLRPSTQYEFTVKVVRAKKESEWSM 540
E Y V + + +YK + T++ +NDL+P+ Y V+ + S
Sbjct: 55 PELYGYEVLISS--TGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSE 112
Query: 541 IVLNTTQEAAPASAPRDLTVVSK 563
+ TT P P +
Sbjct: 113 AEIFTTLSCEP-DIPNPPRISGP 134
>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex;
HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1
Length = 247
Score = 69.8 bits (170), Expect = 2e-13
Identities = 32/235 (13%), Positives = 69/235 (29%), Gaps = 17/235 (7%)
Query: 29 LTSTTSMTASPLDTSTGSIEAI---NETLTLPSAPQSVSAIMVGPRSVALRWLPPTLPRG 85
L +T DT+ + V + + W + P+
Sbjct: 6 LNTTILTPNGNEDTTADFFLTTMPTDSLSVSTLPLPEVQCFVFNVEYMNCTWQSSSEPQP 65
Query: 86 EILVYCVLYKREGSERER-----AYNATARVEAIIQGLHPNTSYTFRVVAYNALGAGLAS 140
L YK +++ + ++ +Q + TF V +
Sbjct: 66 TNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTFVVQLQDPREPR--R 123
Query: 141 SALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVER 200
A + +P P N+ + + S L + W + + ++H Y + D S
Sbjct: 124 QATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRFLNHC-LEHLVQYRTDWDHSWTE 182
Query: 201 HVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTT------SQELSVQTLSDKPS 249
V + + L + Y+ V + G+ S + + + K +
Sbjct: 183 QSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSHPIHWGSNTSKEN 237
Score = 65.2 bits (158), Expect = 6e-12
Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 13/153 (8%)
Query: 500 PRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLT 559
Y + + Q+ F V++ ++ + +L P AP +LT
Sbjct: 86 SHYLFSEEITSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIP-WAPENLT 144
Query: 560 VVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEP 619
+ + S + LNW + + + Y +D W E+SV + ++ ++
Sbjct: 145 L--HKLSESQLELNWNNRFLNHCLE--HLVQYRTD-WDHSWTEQSV-DYRHKFSLPSVDG 198
Query: 620 GRIYYFKIKARNSAGS------SPYSSTVTWTT 646
+ Y F++++R + S +S + W +
Sbjct: 199 QKRYTFRVRSRFNPLCGSAQHWSEWSHPIHWGS 231
Score = 58.7 bits (141), Expect = 1e-09
Identities = 25/246 (10%), Positives = 60/246 (24%), Gaps = 25/246 (10%)
Query: 217 FTLYSIWVVAHNGN---GAGTTSQELSVQTLSDKPSEPP--------ANSITVRWQPPSR 265
+L + ++ NGN A + +LS P + WQ S
Sbjct: 3 LSLLNTTILTPNGNEDTTADFFLTTMPTDSLSVSTLPLPEVQCFVFNVEYMNCTWQSSSE 62
Query: 266 RGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSG 325
+ Y + D + + + + + +
Sbjct: 63 PQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTFVVQLQDPREPR 122
Query: 326 PATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGK 385
T L +P P +L S + ++W + +
Sbjct: 123 ------RQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRFLNHCLEHLVQY---R 173
Query: 386 GVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKY-----ESLRTRNEP 440
D + + + ++ Y +R+ G ++ + +
Sbjct: 174 TDWDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSHPIHWGSNT 233
Query: 441 PPQAPK 446
+ P+
Sbjct: 234 SKENPR 239
Score = 51.7 bits (123), Expect = 3e-07
Identities = 35/251 (13%), Positives = 76/251 (30%), Gaps = 37/251 (14%)
Query: 319 MNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRG 378
+ NG+ T F T D + +P ++ + +W ++
Sbjct: 11 LTPNGNEDTTADFFLTTMPTDSLSVSTLPLP-EVQCFVFNVEYMNCTWQSSSEPQ-PTNL 68
Query: 379 FTLGWGKGVPDEFVKQILDVKQRSDE-----ITGLEPNSDYVISLRAFNEMGDGPQKYES 433
W K ++ V++ + + E + ++ + Q +
Sbjct: 69 TLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQM 128
Query: 434 LRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTH 493
L+ +N P P L LS + ++W + L + +LV+Y
Sbjct: 129 LKLQNLVIPW------APENLTLHKLSESQLELNWNNRFLNHCLE--------HLVQYRT 174
Query: 494 LLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKE---------SEWS--MIV 542
+ + + + +Y F VR++ SEWS +
Sbjct: 175 --DWDHSWTEQSVDYRHKFSLPSVDGQKRYTFR---VRSRFNPLCGSAQHWSEWSHPIHW 229
Query: 543 LNTTQEAAPAS 553
+ T + P +
Sbjct: 230 GSNTSKENPRT 240
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein
binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP:
b.1.2.1
Length = 115
Score = 66.1 bits (161), Expect = 2e-13
Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 15/109 (13%)
Query: 56 LPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSE--------------R 101
P + + SV LRW+ P I+++ V Y+ G
Sbjct: 2 STYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 61
Query: 102 ERAYNATARVEAIIQGLHPNTSYTFRVVAYNALGAGLASSA-LPVKTEP 149
+ A + L P +Y FR++A + S+ +P
Sbjct: 62 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQP 110
Score = 64.9 bits (158), Expect = 6e-13
Identities = 21/104 (20%), Positives = 32/104 (30%), Gaps = 14/104 (13%)
Query: 550 APASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWI-------- 601
P V V L W P++ I + + Y W
Sbjct: 1 GSTYPPTPPNVTRL--SDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPY 58
Query: 602 ----EESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSST 641
S +G + +V L+P Y F+I A S + S+T
Sbjct: 59 GKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNT 102
Score = 53.4 bits (128), Expect = 6e-09
Identities = 14/101 (13%), Positives = 26/101 (25%), Gaps = 15/101 (14%)
Query: 153 VPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVE------------- 199
PP N+ + S+++ W P I + + Y
Sbjct: 2 STYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 61
Query: 200 --RHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQE 238
+ + +T L Y ++A N S
Sbjct: 62 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNT 102
Score = 49.5 bits (118), Expect = 2e-07
Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 13/85 (15%)
Query: 253 ANSITVRWQPPSRRGQNGIITGYKLRYKKK-----------DVKKDKGETVTTAGDRRLY 301
S+ +RW P G I +K++Y+ ++ K + + G
Sbjct: 16 DESVMLRWMVPRNDG--LPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTA 73
Query: 302 VITGLNKSTTYQIKLWAMNVNGSGP 326
+T L TY+ ++ A+ N
Sbjct: 74 SVTDLKPQHTYRFRILAVYSNNDNK 98
Score = 48.0 bits (114), Expect = 5e-07
Identities = 15/112 (13%), Positives = 30/112 (26%), Gaps = 13/112 (11%)
Query: 345 VPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTL---------GW----GKGVPDEF 391
P S+++ W P + + + F + W +
Sbjct: 2 STYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 61
Query: 392 VKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQ 443
K + +T L+P Y + A D + S + +P
Sbjct: 62 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAA 113
Score = 33.7 bits (77), Expect = 0.051
Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 18/103 (17%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRY------------THLLGA 497
PP LS S+ + W +P + G + V+Y +
Sbjct: 5 PPTPPNVTRLSDESVMLRW---MVP---RNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPY 58
Query: 498 SNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSM 540
P++ + + DL+P Y F + V + +++ S
Sbjct: 59 GKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESN 101
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 108
Score = 65.5 bits (160), Expect = 3e-13
Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 5/103 (4%)
Query: 154 PSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTP--QLSYEL 211
+PP ++ V + V WE ++ + Y+ + P S L
Sbjct: 8 LAPPRHLGFSDVSHDAARVFWEGAP---RPVRLVRVTYVSSEGGHSGQTEAPGNATSAML 64
Query: 212 TGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPAN 254
LS T Y++ V G +T + PS P++
Sbjct: 65 GPLSSSTTYTVRVTCLYPGGGSSTLTGRVTTKKAPSPSSGPSS 107
Score = 62.8 bits (153), Expect = 3e-12
Identities = 19/107 (17%), Positives = 33/107 (30%), Gaps = 8/107 (7%)
Query: 52 ETLTLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARV 111
+ + P+ + V + + W + + V Y A
Sbjct: 3 SGSSGLAPPRHLGFSDVSHDAARVFWEGAP---RPVRLVRVTYVSSEGGHSGQTEAPGNA 59
Query: 112 -EAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPP 157
A++ L +T+YT RV G + V T+ PSP
Sbjct: 60 TSAMLGPLSSSTTYTVRVTCLYPGGGSSTLTG-RVTTKK---APSPS 102
Score = 62.1 bits (151), Expect = 4e-12
Identities = 13/104 (12%), Positives = 28/104 (26%), Gaps = 6/104 (5%)
Query: 546 TQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESV 605
+ ++ + PR L + W+ + + Y S +
Sbjct: 2 SSGSSGLAPPRHLGFSDV--SHDAARVFWEGA---PRPVRLVRVTYVS-SEGGHSGQTEA 55
Query: 606 VGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649
G+ S + L Y ++ G S + T +
Sbjct: 56 PGNATSAMLGPLSSSTTYTVRVTCLYPGGGSSTLTGRVTTKKAP 99
Score = 57.4 bits (139), Expect = 2e-10
Identities = 13/104 (12%), Positives = 26/104 (25%), Gaps = 3/104 (2%)
Query: 344 TVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSD 403
+ P L + V W VR + + + S
Sbjct: 6 SGLAPPRHLGFSDVSHDAARVFWEGAPRP---VRLVRVTYVSSEGGHSGQTEAPGNATSA 62
Query: 404 EITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQAPKV 447
+ L ++ Y + + G + T+ P P +
Sbjct: 63 MLGPLSSSTTYTVRVTCLYPGGGSSTLTGRVTTKKAPSPSSGPS 106
Score = 55.5 bits (134), Expect = 1e-09
Identities = 10/75 (13%), Positives = 25/75 (33%), Gaps = 7/75 (9%)
Query: 253 ANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTY 312
++ V W+ + ++ Y + G+ ++ L+ STTY
Sbjct: 21 HDAARVFWEGAP-----RPVRLVRVTYVSSE--GGHSGQTEAPGNATSAMLGPLSSSTTY 73
Query: 313 QIKLWAMNVNGSGPA 327
+++ + G
Sbjct: 74 TVRVTCLYPGGGSST 88
Score = 55.5 bits (134), Expect = 1e-09
Identities = 25/108 (23%), Positives = 35/108 (32%), Gaps = 10/108 (9%)
Query: 448 LIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINA 507
L PP L +S + R+ W P R V Y G +
Sbjct: 8 LAPPRHLGFSDVSHDAARVFW--EGAPRPV-------RLVRVTYVSSEG-GHSGQTEAPG 57
Query: 508 NITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAP 555
N TS + L ST Y V + S + T + +P+S P
Sbjct: 58 NATSAMLGPLSSSTTYTVRVTCLYPGGGSSTLTGRVTTKKAPSPSSGP 105
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design,
S de novo protein; HET: DIO; 1.00A {Synthetic}
Length = 98
Score = 64.4 bits (157), Expect = 5e-13
Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 5/95 (5%)
Query: 553 SAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMST 612
AP DL V + + + ++W PP + I+GY I Y+ + E +V S
Sbjct: 3 DAPTDLQVTNV--TDTSITVSWTPP---SATITGYRITYTPSNGPGEPKELTVPPSSTSV 57
Query: 613 NVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTA 647
+ GL PG Y + A SP T
Sbjct: 58 TITGLTPGVEYVVSVYALKDNQESPPLVGTQTTGG 92
Score = 61.3 bits (149), Expect = 7e-12
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
Query: 155 SPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVT---PQLSYEL 211
P ++ + V +S+ V+W P + I Y + Y + E +T S +
Sbjct: 3 DAPTDLQVTNVTDTSITVSWTPP---SATITGYRITYTPSNGPGEPKELTVPPSSTSVTI 59
Query: 212 TGLSHFTLYSIWVVAHNGNGAG 233
TGL+ Y + V A N
Sbjct: 60 TGLTPGVEYVVSVYALKDNQES 81
Score = 59.8 bits (145), Expect = 3e-11
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 253 ANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTY 312
SITV W PP + ITGY++ Y + + + +T ITGL Y
Sbjct: 15 DTSITVSWTPP-----SATITGYRITYTPSN-GPGEPKELTVPPSSTSVTITGLTPGVEY 68
Query: 313 QIKLWAMNVNGSGPAT 328
+ ++A+ N P
Sbjct: 69 VVSVYALKDNQESPPL 84
Score = 58.2 bits (141), Expect = 8e-11
Identities = 19/88 (21%), Positives = 27/88 (30%), Gaps = 7/88 (7%)
Query: 58 SAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYK---REGSERERAYNATARVEAI 114
AP + V S+ + W PP+ I Y + Y G +E ++
Sbjct: 3 DAPTDLQVTNVTDTSITVSWTPPS---ATITGYRITYTPSNGPGEPKELTVPPSST-SVT 58
Query: 115 IQGLHPNTSYTFRVVAYNALGAGLASSA 142
I GL P Y V A
Sbjct: 59 ITGLTPGVEYVVSVYALKDNQESPPLVG 86
Score = 57.1 bits (138), Expect = 2e-10
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Query: 347 DIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWG-KGVPDEFVKQILDVKQRSDEI 405
D P L+ +SI VSWTPP+ + G+ + + P E + + S I
Sbjct: 3 DAPTDLQVTNVTDTSITVSWTPPSAT---ITGYRITYTPSNGPGEPKELTVPPSSTSVTI 59
Query: 406 TGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPP 442
TGL P +YV+S+ A + + P + T
Sbjct: 60 TGLTPGVEYVVSVYALKDNQESPPLVGTQTTGGHHHH 96
Score = 53.6 bits (129), Expect = 4e-09
Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 9/105 (8%)
Query: 447 VLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYIN 506
+L P L+ ++ S+ +SW Y + YT G P+ +
Sbjct: 1 MLDAPTDLQVTNVTDTSITVSW---------TPPSATITGYRITYTPSNGPGEPKELTVP 51
Query: 507 ANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAP 551
+ TSV I L P +Y +V ++ +ES + T
Sbjct: 52 PSSTSVTITGLTPGVEYVVSVYALKDNQESPPLVGTQTTGGHHHH 96
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de
novo; 2.50A {Synthetic}
Length = 98
Score = 64.4 bits (157), Expect = 6e-13
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 5/94 (5%)
Query: 554 APRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTN 613
AP++L V E + L+W P + + I Y + I +V G + S +
Sbjct: 4 APKNLVVS--EVTEDSLRLSWTAP---DAAFDSFMIQYQESEKVGEAINLTVPGSERSYD 58
Query: 614 VRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTA 647
+ GL+PG Y I S S T
Sbjct: 59 LTGLKPGTEYTVSIYGVKGGHRSNPLSAEFTTGG 92
Score = 56.3 bits (136), Expect = 4e-10
Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 253 ANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTY 312
+S+ + W P + + ++Y++ + K + +T G R Y +TGL T Y
Sbjct: 15 EDSLRLSWTAP-----DAAFDSFMIQYQESE-KVGEAINLTVPGSERSYDLTGLKPGTEY 68
Query: 313 QIKLWAMNVNGSGPAT 328
+ ++ +
Sbjct: 69 TVSIYGVKGGHRSNPL 84
Score = 55.2 bits (133), Expect = 1e-09
Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 4/100 (4%)
Query: 345 VPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQI-LDVKQRSD 403
+ P +L S+ +SWT P F + + + + + +RS
Sbjct: 1 MLPAPKNLVVSEVTEDSLRLSWTAPDAA---FDSFMIQYQESEKVGEAINLTVPGSERSY 57
Query: 404 EITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQ 443
++TGL+P ++Y +S+ T
Sbjct: 58 DLTGLKPGTEYTVSIYGVKGGHRSNPLSAEFTTGGHHHHH 97
Score = 55.2 bits (133), Expect = 1e-09
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 156 PPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVT---PQLSYELT 212
P N+ + V SL ++W P + + + Y E + E +T + SY+LT
Sbjct: 4 APKNLVVSEVTEDSLRLSWTAP---DAAFDSFMIQYQESEKVGEAINLTVPGSERSYDLT 60
Query: 213 GLSHFTLYSIWVVAHNGNGAG 233
GL T Y++ + G
Sbjct: 61 GLKPGTEYTVSIYGVKGGHRS 81
Score = 53.6 bits (129), Expect = 4e-09
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 1/84 (1%)
Query: 59 APQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAIIQGL 118
AP+++ V S+ L W P ++ ++ G + R + GL
Sbjct: 4 APKNLVVSEVTEDSLRLSWTAPDAAFDSFMIQYQESEKVGEAINLTVPGSER-SYDLTGL 62
Query: 119 HPNTSYTFRVVAYNALGAGLASSA 142
P T YT + SA
Sbjct: 63 KPGTEYTVSIYGVKGGHRSNPLSA 86
Score = 53.6 bits (129), Expect = 4e-09
Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 9/105 (8%)
Query: 447 VLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYIN 506
+L P L ++ S+R+SW T PD ++++Y +
Sbjct: 1 MLPAPKNLVVSEVTEDSLRLSW---TAPD------AAFDSFMIQYQESEKVGEAINLTVP 51
Query: 507 ANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAP 551
+ S + L+P T+Y ++ V+ S T
Sbjct: 52 GSERSYDLTGLKPGTEYTVSIYGVKGGHRSNPLSAEFTTGGHHHH 96
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 94
Score = 64.0 bits (156), Expect = 7e-13
Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 553 SAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMST 612
P+ L + D + + W+ P GQ+S Y + YSS + + + G++ +
Sbjct: 3 DRPKGLAFT--DVDVDSIKIAWESP---QGQVSRYRVTYSSPEDGIHELFPAPDGEEDTA 57
Query: 613 NVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTT 646
++GL PG Y + A + S T
Sbjct: 58 ELQGLRPGSEYTVSVVALHDDMESQPLIGTQSTA 91
Score = 60.1 bits (146), Expect = 2e-11
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 9/98 (9%)
Query: 155 SPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTP---QLSYEL 211
P + V S+ + WE P G++ Y + Y + + P + + EL
Sbjct: 3 DRPKGLAFTDVDVDSIKIAWESP---QGQVSRYRVTYSSPEDGIHELFPAPDGEEDTAEL 59
Query: 212 TGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPS 249
GL + Y++ VVA + + SQ L + P+
Sbjct: 60 QGLRPGSEYTVSVVALHDDM---ESQPLIGTQSTAIPA 94
Score = 57.8 bits (140), Expect = 1e-10
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Query: 253 ANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTY 312
+SI + W+ P G ++ Y++ Y + G+ + GL + Y
Sbjct: 15 VDSIKIAWESP-----QGQVSRYRVTYSSPE-DGIHELFPAPDGEEDTAELQGLRPGSEY 68
Query: 313 QIKLWAMNVNG-SGPATDWFS 332
+ + A++ + S P S
Sbjct: 69 TVSVVALHDDMESQPLIGTQS 89
Score = 56.6 bits (137), Expect = 3e-10
Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 5/87 (5%)
Query: 58 SAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYK--REGSERERAYNATARVEAII 115
P+ ++ V S+ + W P G++ Y V Y +G A +
Sbjct: 3 DRPKGLAFTDVDVDSIKIAWESPQ---GQVSRYRVTYSSPEDGIHELFPAPDGEEDTAEL 59
Query: 116 QGLHPNTSYTFRVVAYNALGAGLASSA 142
QGL P + YT VVA +
Sbjct: 60 QGLRPGSEYTVSVVALHDDMESQPLIG 86
Score = 51.3 bits (123), Expect = 2e-08
Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Query: 347 DIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGK-GVPDEFVKQILDVKQRSDEI 405
D P L SI ++W P Q V + + + + D ++ + E+
Sbjct: 3 DRPKGLAFTDVDVDSIKIAWESPQGQ---VSRYRVTYSSPEDGIHELFPAPDGEEDTAEL 59
Query: 406 TGLEPNSDYVISLRAFNEMGDGPQKYESLRT 436
GL P S+Y +S+ A ++ + + T
Sbjct: 60 QGLRPGSEYTVSVVALHDDMESQPLIGTQST 90
Score = 50.1 bits (120), Expect = 5e-08
Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 9/100 (9%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANI 509
P GL + S++I+W P + Y V Y+ + + +
Sbjct: 4 RPKGLAFTDVDVDSIKIAW---ESPQ------GQVSRYRVTYSSPEDGIHELFPAPDGEE 54
Query: 510 TSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEA 549
+ ++ LRP ++Y +V + ES+ + +T A
Sbjct: 55 DTAELQGLRPGSEYTVSVVALHDDMESQPLIGTQSTAIPA 94
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 112
Score = 64.7 bits (158), Expect = 7e-13
Identities = 27/112 (24%), Positives = 41/112 (36%), Gaps = 4/112 (3%)
Query: 544 NTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANG-QISGYTILYSSDPNTDQWIE 602
+ ++P P ++ V L W P+ G +I+ Y + PN
Sbjct: 3 HHHHHSSPIDPPGKPVPLNI--TRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKA 60
Query: 603 ESVVGDKMSTNVRGLEPGRIYYFKIKARNSAG-SSPYSSTVTWTTASDMQEA 653
+ V GL Y F++ A+N+AG SP S T D EA
Sbjct: 61 NFSNILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDVEA 112
Score = 63.9 bits (156), Expect = 1e-12
Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 5/99 (5%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLPRG-EILVYCVLYKREGSERERAYNAT--ARVEA 113
P + + +V L+W P G +I Y V + + R N + E
Sbjct: 11 IDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEF 70
Query: 114 IIQGLHPNTSYTFRVVAYNALGAGLASSAL--PVKTEPE 150
+ GL + +Y FRV+A NA GA S + +
Sbjct: 71 TVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDD 109
Score = 45.8 bits (109), Expect = 3e-06
Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 17/110 (15%)
Query: 154 PSPPLNVNIPVVGTSSLLVTWEKPTVTNG-EIKHYTLYYLEEDTSVERHVVT---PQLSY 209
PP + ++ + W KP T G +I Y + + + +
Sbjct: 11 IDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEF 70
Query: 210 ELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPANSITVR 259
++GL+ Y V+A N AG S PS P+++IT R
Sbjct: 71 TVSGLTEDAAYEFRVIAK--NAAGAISP----------PS-EPSDAITCR 107
Score = 41.6 bits (98), Expect = 1e-04
Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 248 PSEPP---------ANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDR 298
P +PP +++T++W P G IT Y + + + +
Sbjct: 10 PIDPPGKPVPLNITRHTVTLKWAKPEYTG-GFKITSYIVEKRDLP-NGRWLKANFSNILE 67
Query: 299 RLYVITGLNKSTTYQIKLWAMNVNGSG 325
+ ++GL + Y+ ++ A N G+
Sbjct: 68 NEFTVSGLTEDAAYEFRVIAKNAAGAI 94
Score = 35.8 bits (83), Expect = 0.010
Identities = 10/87 (11%), Positives = 25/87 (28%), Gaps = 2/87 (2%)
Query: 343 FTVPDIPASLKARPGGPSSIIVSWTPPA-DQSIMVRGFTL-GWGKGVPDEFVKQILDVKQ 400
+ D P ++ + W P + + + ++ +
Sbjct: 8 SSPIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILE 67
Query: 401 RSDEITGLEPNSDYVISLRAFNEMGDG 427
++GL ++ Y + A N G
Sbjct: 68 NEFTVSGLTEDAAYEFRVIAKNAAGAI 94
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 64.0 bits (156), Expect = 9e-13
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 3/88 (3%)
Query: 55 TLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAI 114
+ AP+ + A V PR+ L W P Y + + G + +
Sbjct: 6 SGLEAPRDLEAKEVTPRTALLTWTEP---PVRPAGYLLSFHTPGGQTQEILLPGGITSHQ 62
Query: 115 IQGLHPNTSYTFRVVAYNALGAGLASSA 142
+ GL P+TSY R+ A S
Sbjct: 63 LLGLFPSTSYNARLQAMWGQSLLPPVST 90
Score = 63.6 bits (155), Expect = 1e-12
Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 5/100 (5%)
Query: 154 PSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTP-QLSYELT 212
P ++ V + L+TW +P Y L + + ++ S++L
Sbjct: 8 LEAPRDLEAKEVTPRTALLTWTEP---PVRPAGYLLSFHTPGGQTQEILLPGGITSHQLL 64
Query: 213 GLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPP 252
GL T Y+ + A G S T + S P
Sbjct: 65 GLFPSTSYNARLQAMWGQSLLPPVST-SFTTGGLRISGPS 103
Score = 60.2 bits (146), Expect = 2e-11
Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 7/95 (7%)
Query: 553 SAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMST 612
APRDL P L W P + +GY + + + Q I + G S
Sbjct: 9 EAPRDLEAKEVT--PRTALLTWTEP---PVRPAGYLLSFHTPGGQTQEIL--LPGGITSH 61
Query: 613 NVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTA 647
+ GL P Y +++A P ST T
Sbjct: 62 QLLGLFPSTSYNARLQAMWGQSLLPPVSTSFTTGG 96
Score = 55.2 bits (133), Expect = 1e-09
Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
Query: 344 TVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQI-LDVKQRS 402
+ + P L+A+ P + +++WT P + G+ L + P ++I L S
Sbjct: 6 SGLEAPRDLEAKEVTPRTALLTWTEPPVR---PAGYLLSFH--TPGGQTQEILLPGGITS 60
Query: 403 DEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPP 442
++ GL P++ Y L+A P S T
Sbjct: 61 HQLLGLFPSTSYNARLQAMWGQSLLPPVSTSFTTGGLRIS 100
Score = 54.8 bits (132), Expect = 2e-09
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 8/76 (10%)
Query: 253 ANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTY 312
+ + W P GY L + + + + G + + GL ST+Y
Sbjct: 21 PRTALLTWTEPP-----VRPAGYLLSFHTPG---GQTQEILLPGGITSHQLLGLFPSTSY 72
Query: 313 QIKLWAMNVNGSGPAT 328
+L AM P
Sbjct: 73 NARLQAMWGQSLLPPV 88
Score = 47.1 bits (112), Expect = 1e-06
Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 11/109 (10%)
Query: 444 APKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYK 503
L P L+++ ++P + ++W + YL+ + G +
Sbjct: 4 GSSGLEAPRDLEAKEVTPRTALLTW---------TEPPVRPAGYLLSFHTPGG--QTQEI 52
Query: 504 YINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPA 552
+ ITS Q+ L PST Y ++ + + T
Sbjct: 53 LLPGGITSHQLLGLFPSTSYNARLQAMWGQSLLPPVSTSFTTGGLRISG 101
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 120
Score = 64.1 bits (156), Expect = 1e-12
Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 7/103 (6%)
Query: 237 QELSVQTLS-DKPSEPPANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVT-- 293
+EL + P ++ V W Q I GY++ Y++ +
Sbjct: 12 KELGDVLVRLHNPVVLTPTTVQVTWTVD---RQPQFIQGYRVMYRQTSGLQATSSWQNLD 68
Query: 294 -TAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAET 335
R V+ L K TY+IK+ G ++ + T
Sbjct: 69 AKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSESKTVRT 111
Score = 59.5 bits (144), Expect = 5e-11
Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 8/97 (8%)
Query: 65 AIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARV------EAIIQGL 118
+++ P +V + W I Y V+Y++ + + A++ L
Sbjct: 24 PVVLTPTTVQVTWTVDR-QPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNL 82
Query: 119 HPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPS 155
+Y +V Y G+ S + V+T E+ PS
Sbjct: 83 KKGVTYEIKVRPYFNEFQGMDSESKTVRT-TEESGPS 118
Score = 59.1 bits (143), Expect = 7e-11
Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 5/87 (5%)
Query: 567 PSLVNLNWQPPKSANGQISGYTILY---SSDPNTDQWIEESV-VGDKMSTNVRGLEPGRI 622
P+ V + W I GY ++Y S T W V + S + L+ G
Sbjct: 29 PTTVQVTWTVD-RQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVT 87
Query: 623 YYFKIKARNSAGSSPYSSTVTWTTASD 649
Y K++ + S + T T +
Sbjct: 88 YEIKVRPYFNEFQGMDSESKTVRTTEE 114
Score = 58.0 bits (140), Expect = 2e-10
Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 10/100 (10%)
Query: 161 NIPVVGTSSLLVTWEKPTVTNGEIKHYTLYY-------LEEDTSVERHVVTPQLSYELTG 213
N V+ +++ VTW I+ Y + Y V + S L
Sbjct: 23 NPVVLTPTTVQVTWTVDR-QPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVN 81
Query: 214 LSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPA 253
L Y I V + G S+ +V+T + S P +
Sbjct: 82 LKKGVTYEIKVRPYFNEFQGMDSESKTVRTTEE--SGPSS 119
Score = 51.4 bits (123), Expect = 4e-08
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 8/100 (8%)
Query: 352 LKARPGGPSSIIVSWTPPADQSIMVRGFTLGW--GKGVPDEFVKQILDVK---QRSDEIT 406
P+++ V+WT Q ++G+ + + G+ Q LD K +RS +
Sbjct: 22 HNPVVLTPTTVQVTWTVD-RQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLV 80
Query: 407 GLEPNSDYVISLRAFNEMGDGPQ-KYESLRTRNE-PPPQA 444
L+ Y I +R + G + +++RT E P
Sbjct: 81 NLKKGVTYEIKVRPYFNEFQGMDSESKTVRTTEESGPSSG 120
Score = 44.5 bits (105), Expect = 1e-05
Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 12/103 (11%)
Query: 457 EVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNP----RYKYINANITSV 512
VL+P +++++W T+ Q Q +G Y V Y G S
Sbjct: 25 VVLTPTTVQVTW---TVDRQPQFI--QG--YRVMYRQTSGLQATSSWQNLDAKVPTERSA 77
Query: 513 QINDLRPSTQYEFTVKVVRAKKESEWS-MIVLNTTQEAAPASA 554
+ +L+ YE V+ + + S + TT+E+ P+S
Sbjct: 78 VLVNLKKGVTYEIKVRPYFNEFQGMDSESKTVRTTEESGPSSG 120
>2b5i_C Cytokine receptor common gamma chain; four-helix bundle,
fibronectin domain, cytokine-cytokine REC complex; HET:
NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB:
3bpl_C* 3qb7_C* 3qaz_C*
Length = 199
Score = 65.5 bits (159), Expect = 2e-12
Identities = 27/201 (13%), Positives = 63/201 (31%), Gaps = 14/201 (6%)
Query: 60 PQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERER-----AYNATARVEAI 114
V + + W + P+ L YK +++ + ++
Sbjct: 2 LPEVQCFVFNVEYMNCTWQSSSEPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQ 61
Query: 115 IQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTW 174
+Q + TF V + ++ + +P P N+ + + S L + W
Sbjct: 62 LQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLV--IPWAPENLTLHKLSESQLELNW 119
Query: 175 EKPTVTNGEIKHYTLYYLEEDTSVERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGT 234
+ + ++H Y + D S V + + L + Y+ V + G+
Sbjct: 120 NNRFLNHC-LEHLVQYRTDWDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGS 178
Query: 235 T------SQELSVQTLSDKPS 249
S + + + K +
Sbjct: 179 AQHWSEWSHPIHWGSNTSKEN 199
Score = 65.5 bits (159), Expect = 3e-12
Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 13/153 (8%)
Query: 500 PRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLT 559
Y + + Q+ F V++ ++ + +L P AP +LT
Sbjct: 48 SHYLFSEEITSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIP-WAPENLT 106
Query: 560 VVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEP 619
+ + S + LNW + + + Y +D W E+SV + ++ ++
Sbjct: 107 L--HKLSESQLELNWNNRFLNHCLE--HLVQYRTD-WDHSWTEQSV-DYRHKFSLPSVDG 160
Query: 620 GRIYYFKIKARNSAGS------SPYSSTVTWTT 646
+ Y F++++R + S +S + W +
Sbjct: 161 QKRYTFRVRSRFNPLCGSAQHWSEWSHPIHWGS 193
Score = 52.8 bits (126), Expect = 5e-08
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAIIQ 116
P AP++++ + + L W L L + V Y+ + + R + +
Sbjct: 99 PWAPENLTLHKLSESQLELNWNNRFLNH--CLEHLVQYRTDWDHSWTEQSVDYRHKFSLP 156
Query: 117 GLHPNTSYTFRV 128
+ YTFRV
Sbjct: 157 SVDGQKRYTFRV 168
Score = 50.5 bits (120), Expect = 4e-07
Identities = 26/194 (13%), Positives = 57/194 (29%), Gaps = 34/194 (17%)
Query: 360 SSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSDE-----ITGLEPNSDY 414
+ +W ++ W K ++ V++ + + E +
Sbjct: 13 EYMNCTWQSSSEPQ-PTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQ 71
Query: 415 VISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLP 474
++ + Q + L+ +N P P L LS + ++W + L
Sbjct: 72 TFVVQLQDPREPRRQATQMLKLQNLVIPW------APENLTLHKLSESQLELNWNNRFLN 125
Query: 475 DQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKK 534
+ +LV+Y + + + + +Y F VR++
Sbjct: 126 HCLE--------HLVQYRT--DWDHSWTEQSVDYRHKFSLPSVDGQKRYTFR---VRSRF 172
Query: 535 E---------SEWS 539
SEWS
Sbjct: 173 NPLCGSAQHWSEWS 186
Score = 49.7 bits (118), Expect = 6e-07
Identities = 17/179 (9%), Positives = 42/179 (23%), Gaps = 9/179 (5%)
Query: 255 SITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQI 314
+ WQ S + Y + D + + + +
Sbjct: 14 YMNCTWQSSSEPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTF 73
Query: 315 KLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSI 374
+ + T L +P P +L S + ++W
Sbjct: 74 VVQLQDPREPR------RQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRFLNHC 127
Query: 375 MVRGFTLGWGKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYES 433
+ + D + + + ++ Y +R+ G ++ S
Sbjct: 128 LEHLVQY---RTDWDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWS 183
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin
type-III, beta-N-acetylglucosaminidase, cohesin,
hydrolase; 1.80A {Clostridium perfringens}
Length = 238
Score = 63.8 bits (154), Expect = 2e-11
Identities = 39/229 (17%), Positives = 75/229 (32%), Gaps = 18/229 (7%)
Query: 22 TPPNQYHLTSTTSMTASPLDTSTGSIEAINETLTL-PSAPQSVSAIMVGPRSVALRWLPP 80
+ + + + A + TL +A + V AI V + +
Sbjct: 19 EALEEVQVGENIEVGVGIDELVNAEAFAYDFTLNYDENAFEYVEAISDDGVFVNAKKIED 78
Query: 81 TLPRGEILVYCVLYKREGSERERAYNATARVEAIIQGLHPNTSYTFRVVAYNALGAGLAS 140
R VL E A A+V + ++ + + +
Sbjct: 79 GKVR-------VLVSSLTGEPLPAKEVLAKVVLRAEAKTEGSNLSVTNSSVGDGEGLVHE 131
Query: 141 SALPVKT------EPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEE 194
A KT + V +P + + ++ VTW +P T G Y L +
Sbjct: 132 IAGTEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTWTEPETTEG----LEGYILYK 187
Query: 195 DTSVERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQT 243
D + + SY L+ T+Y+ + A NG ++ + L+++T
Sbjct: 188 DGKKVAEIGKDETSYTFKKLNRHTIYNFKIAAKYSNGEVSSKESLTLRT 236
Score = 58.0 bits (139), Expect = 2e-09
Identities = 26/145 (17%), Positives = 46/145 (31%), Gaps = 16/145 (11%)
Query: 510 TSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPA-------SAPRDLTVVS 562
++ + T V + + T + RD
Sbjct: 102 VVLRAEAKTEGSNLSVTNSSVGDGEGLVHEIAGTEKTVNIIEGTSPEIVVNPVRDFKASE 161
Query: 563 KEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRI 622
+ V + W P++ G + GY + + + E + D+ S + L I
Sbjct: 162 I--NKKNVTVTWTEPETTEG-LEGYILYK-----DGKKVAE-IGKDETSYTFKKLNRHTI 212
Query: 623 YYFKIKARNSAGSSPYSSTVTWTTA 647
Y FKI A+ S G ++T TA
Sbjct: 213 YNFKIAAKYSNGEVSSKESLTLRTA 237
Score = 57.3 bits (137), Expect = 3e-09
Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 5/105 (4%)
Query: 44 TGSIEAINETLTLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERER 103
T +I + + + A + ++V + W P G + Y +LYK E
Sbjct: 138 TVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTWTEPETTEG-LEGY-ILYKDGKKVAEI 195
Query: 104 AYNATARVEAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTE 148
+ T + L+ +T Y F++ A + G + +L ++T
Sbjct: 196 GKDET---SYTFKKLNRHTIYNFKIAAKYSNGEVSSKESLTLRTA 237
Score = 51.5 bits (122), Expect = 3e-07
Identities = 29/229 (12%), Positives = 62/229 (27%), Gaps = 21/229 (9%)
Query: 118 LHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWE-K 176
L +G +A + + + + + +
Sbjct: 18 LEALEEVQVGENIEVGVGIDELVNAEAFAYDFTLNYDENAFEYVEAISDDGVFVNAKKIE 77
Query: 177 PTVTNGEIKHYTLYYLEEDTSVERHVVTPQLSYELT--GLSHFTLYSIWVVAHNGNGAGT 234
+ T L + + V+ + E + +++ ++ + H G
Sbjct: 78 DGKVRVLVSSLTGEPLPAKEVLAKVVLRAEAKTEGSNLSVTNSSVGDGEGLVHEIAGTEK 137
Query: 235 TSQELSVQTLSDKPSEPP--------ANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKK 286
T + + + ++TV W P + GY + K
Sbjct: 138 TVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTWTEPE---TTEGLEGY-------ILYK 187
Query: 287 DKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAET 335
D + D Y LN+ T Y K+ A NG + + + T
Sbjct: 188 DGKKVAEIGKDETSYTFKKLNRHTIYNFKIAAKYSNGEVSSKESLTLRT 236
Score = 33.8 bits (76), Expect = 0.15
Identities = 26/260 (10%), Positives = 68/260 (26%), Gaps = 32/260 (12%)
Query: 289 GETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDI 348
E G L + + ++ + ++ A + T + D F +
Sbjct: 7 KEAAEVTGSVSLEALEEVQVGENIEVG---VGIDELVNAEAFAYDFTLNYDENAFEYVEA 63
Query: 349 PASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSDEITGL 408
+ + V+ D + V +L E + +
Sbjct: 64 ISD--------DGVFVNAKKIEDGKVRVLVSSLTGEPLPAKE------VLAKVVLRAEAK 109
Query: 409 EPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLI--PPMGLKSEVLSPYSMRI 466
S+ ++ + + + ++ P K+ ++ ++ +
Sbjct: 110 TEGSNLSVTNSSVGDGEGLVHEIAGTEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTV 169
Query: 467 SWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFT 526
+W + + + + +L + I + TS L T Y F
Sbjct: 170 TWTEPETTEGLEGY-------------ILYKDGKKVAEIGKDETSYTFKKLNRHTIYNFK 216
Query: 527 VKVVRAKKESEWSMIVLNTT 546
+ + E + T
Sbjct: 217 IAAKYSNGEVSSKESLTLRT 236
>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A
{Clostridium thermocellum}
Length = 103
Score = 60.1 bits (146), Expect = 2e-11
Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 8/98 (8%)
Query: 550 APASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTD-QWIEESVVGD 608
+ + P L+ V + NL W A + Y + S+ I ++
Sbjct: 3 SAPAFPTGLSAVLDSSGNT-ANLTWNAAPGA----NSYNVKRSTKSGGPYTTIATNITST 57
Query: 609 KMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTT 646
+ G+ G YY+ + A ++ + S+
Sbjct: 58 --NYTDTGVATGTKYYYVVSAVSNGVETLNSAEAILQY 93
Score = 45.9 bits (109), Expect = 2e-06
Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 6/101 (5%)
Query: 54 LTLPSAPQSVSAIM-VGPRSVALRWLPPTLPRGEILVYCVLYK-REGSERERAYNATARV 111
++ P+ P +SA++ + L W Y V + G
Sbjct: 2 VSAPAFPTGLSAVLDSSGNTANLTWNAAPGANS----YNVKRSTKSGGPYTTIATNITST 57
Query: 112 EAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDH 152
G+ T Y + V A + L S+ ++ +H
Sbjct: 58 NYTDTGVATGTKYYYVVSAVSNGVETLNSAEAILQYPKLEH 98
Score = 41.6 bits (98), Expect = 8e-05
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 7/94 (7%)
Query: 153 VPSPPLNVN-IPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTP--QLSY 209
P+ P ++ + ++ +TW Y + + + T +Y
Sbjct: 4 APAFPTGLSAVLDSSGNTANLTWNAAP----GANSYNVKRSTKSGGPYTTIATNITSTNY 59
Query: 210 ELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQT 243
TG++ T Y V A + S E +Q
Sbjct: 60 TDTGVATGTKYYYVVSAVSNGVETLNSAEAILQY 93
Score = 33.1 bits (76), Expect = 0.059
Identities = 11/83 (13%), Positives = 22/83 (26%), Gaps = 8/83 (9%)
Query: 253 ANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTY 312
N+ + W Y ++ T+ T Y TG+ T Y
Sbjct: 19 GNTANLTWNAAPG------ANSYNVKRS--TKSGGPYTTIATNITSTNYTDTGVATGTKY 70
Query: 313 QIKLWAMNVNGSGPATDWFSAET 335
+ A++ + +
Sbjct: 71 YYVVSAVSNGVETLNSAEAILQY 93
Score = 31.6 bits (72), Expect = 0.19
Identities = 9/86 (10%), Positives = 25/86 (29%), Gaps = 5/86 (5%)
Query: 344 TVPDIPASLKARPG-GPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRS 402
+ P P L A ++ ++W + + + ++ +
Sbjct: 3 SAPAFPTGLSAVLDSSGNTANLTWNAAPG----ANSYNVKRSTKSGGPYTTIATNITSTN 58
Query: 403 DEITGLEPNSDYVISLRAFNEMGDGP 428
TG+ + Y + A + +
Sbjct: 59 YTDTGVATGTKYYYVVSAVSNGVETL 84
Score = 28.1 bits (63), Expect = 3.4
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 506 NANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTT 546
N T+ + T+Y + V V E+ S +
Sbjct: 53 NITSTNYTDTGVATGTKYYYVVSAVSNGVETLNSAEAILQY 93
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR
{Homo sapiens} PDB: 2h45_A
Length = 95
Score = 59.1 bits (143), Expect = 4e-11
Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 5/98 (5%)
Query: 549 AAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGD 608
+V ++ S V ++W + +SG+ + Y D+ +
Sbjct: 3 LGSHLVATSESV-TEITASSFV-VSWVSA---SDTVSGFRVEYELSEEGDEPQYLDLPST 57
Query: 609 KMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTT 646
S N+ L PGR Y + + G + + TT
Sbjct: 58 ATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 95
Score = 52.9 bits (127), Expect = 5e-09
Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 9/98 (9%)
Query: 449 IPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINAN 508
+ ++ S +SW + D + V Y P+Y + +
Sbjct: 7 LVATSESVTEITASSFVVSW--VSASDTVS-------GFRVEYELSEEGDEPQYLDLPST 57
Query: 509 ITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTT 546
TSV I DL P +Y V + E + TT
Sbjct: 58 ATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 95
Score = 51.7 bits (124), Expect = 1e-08
Identities = 15/93 (16%), Positives = 24/93 (25%), Gaps = 1/93 (1%)
Query: 55 TLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAI 114
S S + S + W+ + V L + + +TA
Sbjct: 4 GSHLVATSESVTEITASSFVVSWVSASDTVSGFRVEYELSEEGDEPQYLDLPSTAT-SVN 62
Query: 115 IQGLHPNTSYTFRVVAYNALGAGLASSALPVKT 147
I L P Y V + G + T
Sbjct: 63 IPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 95
Score = 49.8 bits (119), Expect = 8e-08
Identities = 13/94 (13%), Positives = 30/94 (31%), Gaps = 6/94 (6%)
Query: 153 VPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVT---PQLSY 209
+ ++ + SS +V+W + + + + Y + E + S
Sbjct: 5 SHLVATSESVTEITASSFVVSWVSAS---DTVSGFRVEYELSEEGDEPQYLDLPSTATSV 61
Query: 210 ELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQT 243
+ L Y + V + +G + S T
Sbjct: 62 NIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 95
Score = 48.7 bits (116), Expect = 2e-07
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 4/89 (4%)
Query: 341 GEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWG-KGVPDEFVKQILDVK 399
G + S SS +VSW +D V GF + + DE L
Sbjct: 1 GPLGSHLVATSESVTEITASSFVVSWVSASDT---VSGFRVEYELSEEGDEPQYLDLPST 57
Query: 400 QRSDEITGLEPNSDYVISLRAFNEMGDGP 428
S I L P Y++++ +E G+
Sbjct: 58 ATSVNIPDLLPGRKYIVNVYQISEDGEQS 86
Score = 48.7 bits (116), Expect = 2e-07
Identities = 12/89 (13%), Positives = 30/89 (33%), Gaps = 14/89 (15%)
Query: 246 DKPSEPP--------ANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGD 297
A+S V W S ++G+++ Y+ + + D+ + +
Sbjct: 4 GSHLVATSESVTEITASSFVVSWVSASDT-----VSGFRVEYELSE-EGDEPQYLDLPST 57
Query: 298 RRLYVITGLNKSTTYQIKLWAMNVNGSGP 326
I L Y + ++ ++ +G
Sbjct: 58 ATSVNIPDLLPGRKYIVNVYQISEDGEQS 86
>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex
(hormone-receptor) compl; 2.10A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B
2aew_A
Length = 236
Score = 61.8 bits (149), Expect = 1e-10
Identities = 31/244 (12%), Positives = 61/244 (25%), Gaps = 30/244 (12%)
Query: 18 PSSSTPPNQYHLTSTTSMTASPLDTSTGSIEAINETLTLPSAPQSVSAIMVGPRSVALRW 77
S + + +P + P+ + + W
Sbjct: 2 SGSEATAAILSRAPWSLQSVNPGLKTN-----------SSGEPKFTKCRSPERETFSCHW 50
Query: 78 LPPTL-----PRGEILVYCVLYKREGSERER---AYNATARVEAIIQGLHPN--TSYTFR 127
L Y +E ++ + Y + + Y +
Sbjct: 51 TDEVHHGTKNEGPIQLFYTRRNTQEWTQEWKECPDYVSAGENSCYFNSSFTSIAIPYCIK 110
Query: 128 VVAYNALGAGLA-SSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKH 186
+ + S V+ +P + LNV+ + + V WE P + +
Sbjct: 111 LTSNGGTVDEKCFSVDEIVQPDPPIALNWTLLNVS-LTGIHADIQVRWEAPRNADIQKGW 169
Query: 187 YTL-----YYLEEDTSVERHVVTPQLSYELTGLSHFTLYSIWV-VAHNGNGA-GTTSQEL 239
L Y +T + S + L Y + V +G G S+ L
Sbjct: 170 MVLEYELQYKEVNETKWKMMDPILTTSVPVYSLKVDKEYEVRVRSKQRNSGNYGEFSEVL 229
Query: 240 SVQT 243
V
Sbjct: 230 YVTL 233
Score = 53.3 bits (127), Expect = 7e-08
Identities = 32/236 (13%), Positives = 63/236 (26%), Gaps = 35/236 (14%)
Query: 137 GLASSALP-VKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTN-GEIKHYTLYYLEE 194
A +L V + + P + W L+Y
Sbjct: 12 SRAPWSLQSVNPGLKTNSSGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLFYTRR 71
Query: 195 DTSVERHVVTPQLSYELTG----------LSHFTLYSIWVVAHNGNG----------AGT 234
+T Y G S Y I + ++ G
Sbjct: 72 NTQEWTQEWKECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVDEKCFSVDEIVQP 131
Query: 235 TSQELSVQTLSDKPSEPPANSITVRWQPPSR--RGQNGIITGYKLRYKKKDVKKDKGETV 292
TL + I VRW+ P + ++ Y+L+YK+ + + +
Sbjct: 132 DPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVN---ETKWKM 188
Query: 293 TTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDI 348
+ L Y++++ + SG ++ S + T+P +
Sbjct: 189 MDPILTTSVPVYSLKVDKEYEVRVRS-KQRNSGNYGEF-SEVLY------VTLPQM 236
Score = 52.5 bits (125), Expect = 1e-07
Identities = 24/152 (15%), Positives = 50/152 (32%), Gaps = 7/152 (4%)
Query: 500 PRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLT 559
P Y N + + Y + + + V Q P + L
Sbjct: 84 PDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVDEK-CFSVDEIVQPDPPIALNWTLL 142
Query: 560 VVSKEGDPSLVNLNWQPPKSANGQISGYTILYS---SDPNTDQWIEESVVGDKMSTNVRG 616
VS G + + + W+ P++A+ Q + Y + N +W + S V
Sbjct: 143 NVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKW-KMMDPILTTSVPVYS 201
Query: 617 LEPGRIYYFKIKARNSAGS--SPYSSTVTWTT 646
L+ + Y +++++ +S + T
Sbjct: 202 LKVDKEYEVRVRSKQRNSGNYGEFSEVLYVTL 233
Score = 44.8 bits (105), Expect = 4e-05
Identities = 32/203 (15%), Positives = 67/203 (33%), Gaps = 22/203 (10%)
Query: 235 TSQELSVQTLSDKPSEP--------PANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKK 286
+ Q ++ ++ EP + + W G +L Y +++ ++
Sbjct: 17 SLQSVNPGLKTNSSGEPKFTKCRSPERETFSCHWTDEVHHG-TKNEGPIQLFYTRRNTQE 75
Query: 287 DKGETV-----TTAGDRRLYV-ITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDL 340
E +AG+ Y + + + Y IKL + FS + Q
Sbjct: 76 WTQEWKECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVD---EKCFSVDEIVQP- 131
Query: 341 GEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWG---KGVPDEFVKQILD 397
+ + G + I V W P + I L + K V + K +
Sbjct: 132 DPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMDP 191
Query: 398 VKQRSDEITGLEPNSDYVISLRA 420
+ S + L+ + +Y + +R+
Sbjct: 192 ILTTSVPVYSLKVDKEYEVRVRS 214
Score = 33.6 bits (76), Expect = 0.16
Identities = 15/111 (13%), Positives = 32/111 (28%), Gaps = 10/111 (9%)
Query: 536 SEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDP 595
+ WS+ +N + + P+ S + + +W + G L+ +
Sbjct: 14 APWSLQSVNPGLKTNSSGEPKFTKCRSP--ERETFSCHWTDEVHHGTKNEGPIQLFYTRR 71
Query: 596 NTDQWIEESVVGDKMST--------NVRGLEPGRIYYFKIKARNSAGSSPY 638
NT +W +E + N Y K+ +
Sbjct: 72 NTQEWTQEWKECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVDEKC 122
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.5 bits (154), Expect = 2e-10
Identities = 112/691 (16%), Positives = 182/691 (26%), Gaps = 257/691 (37%)
Query: 39 PLDTSTGSIEAINETLTLPSA----------------PQSVSAIMVG--PRSVA------ 74
PL S GS+E L +P+A P+ P + A
Sbjct: 8 PLTLSHGSLEH---VLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF 64
Query: 75 LRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAIIQGLHPNTSYTFRVVA---- 130
L ++ + ++ + + +E E Y + A+ L T
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK 124
Query: 131 --YNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYT 188
A P D + S+L V G +
Sbjct: 125 NYITARIMA---------KRPFDKKSN------------SALF-----RAVGEGNAQLVA 158
Query: 189 LY--------YLEE-----DTSVERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTT 235
++ Y EE T +V L S TL + + +
Sbjct: 159 IFGGQGNTDDYFEELRDLYQTY--HVLVGD-----LIKFSAETLSEL--IRTTLDAEKVF 209
Query: 236 SQELSVQTLSDKPSEPPAN----SITVRWQPPSRRGQ--NGIITGYKLRYKKKDVKKD-K 288
+Q L++ + PS P SI + P Q + ++T L + +++ K
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSIPISC-PLIGVIQLAHYVVTAKLLGFTPGELRSYLK 268
Query: 289 GETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETF------------ 336
G T + G ++T + A W E+F
Sbjct: 269 GATGHSQG-----LVTAV---------AIAE-------TDSW---ESFFVSVRKAITVLF 304
Query: 337 -----SQDLGEFTVPDIPA-----SLKARPGGPSSIIVSWTPPADQSIM--VRGFTLGWG 384
+ + +P SL+ G PS P M +
Sbjct: 305 FIGVRCYE--AYPNTSLPPSILEDSLENNEGVPS-------P------MLSIS------- 342
Query: 385 KGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKY------ESLRTRN 438
+ E V+ ++ L ISL N G + +SL N
Sbjct: 343 -NLTQEQVQDYVNKTNSH-----LPAGKQVEISL--VN----GAKNLVVSGPPQSLYGLN 390
Query: 439 EPPPQAPKVLIPPMGLKSEVLSPYSMR---ISW--IDTTLPDQFQQHGEEGRHYLVRYTH 493
K P +S + P+S R S + P F H H LV +
Sbjct: 391 ---LTLRKAKAPSGLDQSRI--PFSERKLKFSNRFLPVASP--F--H----SHLLVPASD 437
Query: 494 LLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPAS 553
L+ DL + F + + V +T
Sbjct: 438 LI------------------NKDLVKNN-VSF--------NAKDIQIPVYDTFDG----- 465
Query: 554 APRDLTVVSKEGDPSLVN------LNWQPPKSAN-----------GQISGYTILYSSDPN 596
DL V+S +V+ + W + G SG +L N
Sbjct: 466 --SDLRVLSGSISERIVDCIIRLPVKW--ETTTQFKATHILDFGPGGASGLGVLTHR--N 519
Query: 597 TD-QWIEESVVGDKMSTNVRGLEPGRIYYFK 626
D + V G + N P Y FK
Sbjct: 520 KDGTGVRVIVAGT-LDIN-----PDDDYGFK 544
Score = 40.0 bits (93), Expect = 0.004
Identities = 42/227 (18%), Positives = 72/227 (31%), Gaps = 85/227 (37%)
Query: 17 DPSSSTPPNQYHLTSTTSMTASPLDTSTGSIEAINETLTLPSAPQSVSAIMVGPRSVALR 76
+PS+ TP Y L S P S I V + L
Sbjct: 221 NPSN-TPDKDY----------------------------LLSIPISCPLIGV----IQL- 246
Query: 77 WLPPTLPRGEILVYC-VLYKREGSERERAYNATARVEAIIQGL---HPNTSYTFRVVAYN 132
+V +L G R AT + ++ + ++ +F V
Sbjct: 247 --------AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK 298
Query: 133 ALGA----GLAS------SALP--VKTEPEDH---VPSPPLNVNIPVVGTSSLLVTWEKP 177
A+ G+ ++LP + + ++ VPSP L+++ + V +
Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS----NLTQEQVQ-DYV 353
Query: 178 TVTNGEIKHYTLYYLEEDTSVE-------RH-VVT-PQLSYELTGLS 215
TN +L VE ++ VV+ P S L GL+
Sbjct: 354 NKTNS--------HLPAGKQVEISLVNGAKNLVVSGPPQS--LYGLN 390
Score = 37.0 bits (85), Expect = 0.033
Identities = 27/132 (20%), Positives = 45/132 (34%), Gaps = 41/132 (31%)
Query: 452 MGL----KSEV------------LSPYSMRISWIDTTLPDQFQQH--GEEGRHYLVRYTH 493
MG+ S+ Y I I P H GE+G+ Y+
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA 1690
Query: 494 LLGASNPRYKYINANITSVQINDL--RPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAP 551
++ + + + + +I ST Y F R++K +L+ TQ P
Sbjct: 1691 MIFETIV-----DGKLKTEKIFKEINEHSTSYTF-----RSEKG------LLSATQFTQP 1734
Query: 552 ASAPRDLTVVSK 563
A LT++ K
Sbjct: 1735 A-----LTLMEK 1741
Score = 29.2 bits (65), Expect = 6.5
Identities = 7/38 (18%), Positives = 10/38 (26%), Gaps = 6/38 (15%)
Query: 687 PPDLWIHHDQMELKAIEKSSQGSLDLAPTTQLQGEYEP 724
P + Q L+ PT + EP
Sbjct: 23 PTASFFIASQ--LQEQFNKILP----EPTEGFAADDEP 54
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1,
midin-2, ring finger protein 60, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 127
Score = 57.2 bits (138), Expect = 4e-10
Identities = 24/126 (19%), Positives = 39/126 (30%), Gaps = 15/126 (11%)
Query: 43 STGSIEAINETLTLPSAPQ-SVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKR----- 96
S+GS + LT P+ P ++ + W+ I Y + Y
Sbjct: 2 SSGSSGEGLDYLTAPNPPSIREELCTASHDTITVHWISD--DEFSISSYELQYTIFTGQA 59
Query: 97 ------EGSERERAYNATARVEAIIQGLHPNTSYTFRVVAYNALGAGLASSA-LPVKTEP 149
+ + + GL T Y F V A N G+ + L ++P
Sbjct: 60 NFISLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSEPTRLKTNSQP 119
Query: 150 EDHVPS 155
PS
Sbjct: 120 FKSGPS 125
Score = 54.5 bits (131), Expect = 3e-09
Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 12/104 (11%)
Query: 553 SAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGD---- 608
+ P + + ++W + IS Y + Y+ +I D
Sbjct: 17 NPPSIREELC-TASHDTITVHWISDDEFS--ISSYELQYTIFTGQANFISLYNSVDSWMI 73
Query: 609 -----KMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTA 647
+ V GL+ G Y F +KA N AGS T T +
Sbjct: 74 VPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSEPTRLKTNS 117
Score = 48.8 bits (116), Expect = 4e-07
Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 9/124 (7%)
Query: 332 SAETFSQDLGEFTVPDIPA-SLKARPGGPSSIIVSWTPPADQSI--------MVRGFTLG 382
S+ + + L T P+ P+ + +I V W + SI + G
Sbjct: 2 SSGSSGEGLDYLTAPNPPSIREELCTASHDTITVHWISDDEFSISSYELQYTIFTGQANF 61
Query: 383 WGKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPP 442
+ + ++KQ + GL+ + Y+ ++A N+ G + L+T ++P
Sbjct: 62 ISLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSEPTRLKTNSQPFK 121
Query: 443 QAPK 446
P
Sbjct: 122 SGPS 125
Score = 48.4 bits (115), Expect = 5e-07
Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 21/125 (16%)
Query: 232 AGTTSQELSVQTLSDKPSEPPA------NSITVRWQPPSRRGQNGIITGYKLRYKKKDVK 285
+G++ + L T + PS ++ITV W I+ Y+L+Y +
Sbjct: 3 SGSSGEGLDYLTAPNPPSIREELCTASHDTITVHWISDD----EFSISSYELQYTIFTGQ 58
Query: 286 KDKGETVTTAGDRRL--------YVITGLNKSTTYQIKLWAMNVNGSG---PATDWFSAE 334
+ + + Y + GL T Y + A+N GS P +++
Sbjct: 59 ANFISLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSEPTRLKTNSQ 118
Query: 335 TFSQD 339
F
Sbjct: 119 PFKSG 123
Score = 46.8 bits (111), Expect = 2e-06
Identities = 23/116 (19%), Positives = 36/116 (31%), Gaps = 16/116 (13%)
Query: 153 VPSPP-LNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVV-------- 203
P+PP + + ++ V W I Y L Y +
Sbjct: 15 APNPPSIREELCTASHDTITVHWISDD--EFSISSYELQYTIFTGQANFISLYNSVDSWM 72
Query: 204 ----TPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPANS 255
Q Y + GL T Y V A N G+ S+ ++T S P++
Sbjct: 73 IVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSR-NSEPTRLKTNSQPFKSGPSSG 127
Score = 30.7 bits (69), Expect = 0.63
Identities = 23/130 (17%), Positives = 37/130 (28%), Gaps = 20/130 (15%)
Query: 436 TRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLL 495
AP P + + S ++ + W + D Y ++YT
Sbjct: 7 GEGLDYLTAPN--PPSIREELCTASHDTITVHW----ISD----DEFSISSYELQYTIFT 56
Query: 496 GASNPRYKYI---------NANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTT 546
G +N Y N ++ L+ T+Y F VK + L T
Sbjct: 57 GQANFISLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSEPTRL-KT 115
Query: 547 QEAAPASAPR 556
S P
Sbjct: 116 NSQPFKSGPS 125
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.0 bits (147), Expect = 1e-09
Identities = 87/625 (13%), Positives = 168/625 (26%), Gaps = 232/625 (37%)
Query: 79 PPTLPRGEILVYCVLYKREGSERERAYNATARVEAIIQGLHPNTSYTFRVVAYNALGAGL 138
+ L + +L K+E + + + L N Y F L
Sbjct: 58 KDAVSGTLRLFWTLLSKQE--------EMVQK--FVEEVLRIN--YKF-----------L 94
Query: 139 ASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSV 198
S P+KTE PS + + + + ++ + Y +V
Sbjct: 95 MS---PIKTEQRQ--PSMM----------TRMYIEQRDRLYNDNQV--FAKY------NV 131
Query: 199 ERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPANS--- 255
R +L L L + V+ G+G T +++ + +
Sbjct: 132 SRLQPYLKLRQALLELRP----AKNVLIDGVLGSGKTW--VALDVCLSYKVQCKMDFKIF 185
Query: 256 -ITVR----------------------WQPPSRRGQNGIITGYKLRYKKK---------- 282
+ ++ W S N + + ++ + +
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 283 ------DVKKDKGET-----------VTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSG 325
+V ++ + +TT R V L+ +TT I L + S
Sbjct: 246 CLLVLLNV-QNA-KAWNAFNLSCKILLTT---RFKQVTDFLSAATTTHISL----DHHSM 296
Query: 326 PATDWFSAETFSQDLGEFTVPDIPASLKARPGGPS--SIIVSWTPPADQSIMVRGFTLGW 383
T + L D+P P SII +R W
Sbjct: 297 TLTPDEVKSLLLKYLDC-RPQDLPRE--VLTTNPRRLSIIAE---------SIRDGLATW 344
Query: 384 GKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQ 443
++ + + S + LEP R + ++ L
Sbjct: 345 -DNWKHVNCDKLTTIIESS--LNVLEPA-----EYR---------KMFDRL--------- 378
Query: 444 A--PK-VLIPPMGLKSEVLSPYSMRISW--IDTTLPDQF----------QQHGEEGRHYL 488
+ P IP +LS + W + + ++ +E +
Sbjct: 379 SVFPPSAHIPT-----ILLS-----LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 489 -------------VRYTH--LLGASNPRYKYINANITSVQINDLRPST--QYEFT----- 526
H ++ N + + +DL P QY ++
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDS--------DDLIPPYLDQYFYSHIGHH 480
Query: 527 -VKVVRAKKESEWSMIVLN-----------TTQEAAPASAPRDLTVVSK------EGDPS 568
+ ++ + + M+ L+ +T A S L + + DP
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
Query: 569 ---LVN--LNWQPPKSANGQISGYT 588
LVN L++ P N S YT
Sbjct: 541 YERLVNAILDFLPKIEENLICSKYT 565
Score = 46.8 bits (110), Expect = 3e-05
Identities = 50/432 (11%), Positives = 116/432 (26%), Gaps = 124/432 (28%)
Query: 334 ETFSQDLGEFTVPDIPAS-LKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFV 392
+ F + V D+P S L I+ ++ + L + + +FV
Sbjct: 27 DAFVDNFDCKDVQDMPKSILSKEE---IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83
Query: 393 KQILD------VKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESL-RTRNEPPPQ-- 443
+++L + E + I R + + + Q + +R +P +
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR--DRLYNDNQVFAKYNVSRLQPYLKLR 141
Query: 444 --------APKVLIPPMG------LKSEVLSPYSM------RISWI-------DTTLPDQ 476
A VLI + + +V Y + +I W+ T+ +
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 477 FQQHGEEGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKES 536
Q+ Y + + + + + ++ L S YE
Sbjct: 202 LQK-----LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN----------- 245
Query: 537 EWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLV---NLNWQPPKSANGQISGYTILYSS 593
++VL + V + NL+ + +L +
Sbjct: 246 --CLLVL------------LN---VQ---NAKAWNAFNLSCK------------ILLTTR 273
Query: 594 DPN-TDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASDM-Q 651
TD + + + L P D+ +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTP----------DEVKS---LLLKYLDCRPQDLPR 320
Query: 652 EAGGIPNSNQVSNTMILYVKGNTGGKQQAPATQINPPDLWIHHDQMELKAIEKSSQGSLD 711
E N ++S +I + + W + + + + SL+
Sbjct: 321 EVLTT-NPRRLS--II-------------AESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 712 LAPTTQLQGEYE 723
+ + + ++
Sbjct: 365 VLEPAEYRKMFD 376
Score = 44.5 bits (104), Expect = 2e-04
Identities = 83/613 (13%), Positives = 164/613 (26%), Gaps = 221/613 (36%)
Query: 35 MTASPLDTSTGSIEAINETL----TLPSAPQSVSAIMVGPRSVALR----WLPPTLPRGE 86
++ +D S +A++ TL TL S + + V LR +L + + E
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE---VLRINYKFLMSPI-KTE 101
Query: 87 ILVYCVLYKREGSERERAYNAT--------ARVEAI------IQGLHPNTSYTFRVVAYN 132
++ + +R+R YN +R++ + L P V+
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK----NVLIDG 157
Query: 133 ALGAG---LASSAL---------------------------------------PVKTEPE 150
LG+G +A P T
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 151 DHVPSPPLNVNIPVVGTSSLLVTWEKPT-------VTNGE-IKHY-----TLYYLEEDTS 197
DH + L ++ LL + V N + + L
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL-LTTRFKQ 276
Query: 198 V-----ERHVVTPQLSYELTGLSHF---TLYSIWVVAHNGNGAGTTSQELSVQTLSDKP- 248
V L + L+ +L ++ Q+L + L+ P
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL--------DCRPQDLPREVLTTNPR 328
Query: 249 ---------SEPPANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETV------- 292
+ A W +K V DK T+
Sbjct: 329 RLSIIAESIRDGLA-----TWD----------------NWKH--VNCDKLTTIIESSLNV 365
Query: 293 -TTAGDRRLY---VITGLNKST-----TYQIKLWAMNVNGSGPATDWFSAETFSQDLGEF 343
A R+++ + S + +W D+ +
Sbjct: 366 LEPAEYRKMFDRLSV--FPPSAHIPTILLSL-IW--------------------FDVIKS 402
Query: 344 TVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFV--KQILD---V 398
V + L S++ P + +I + L + +E+ + I+D +
Sbjct: 403 DVMVVVNKLHKY-----SLVEKQ--PKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 399 KQRSDEITGLEPNSD-YVIS-----LRAFNEMGDG----PQKYESLR-----TRNE-PPP 442
+ D + P D Y S L+ E + + R R++
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNI-EHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 443 QAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRY-THLLGASNPR 501
A ++ + L Y I D +++ +L + +L+
Sbjct: 515 NASGSILNTLQ----QLKFYKPYICDNDPK----YERLVNAILDFLPKIEENLI-----C 561
Query: 502 YKYINANITSVQI 514
KY ++ ++I
Sbjct: 562 SKY--TDL--LRI 570
>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin
domain, cytokine-cytokine REC complex; HET: NAG; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B*
2erj_B*
Length = 214
Score = 57.1 bits (137), Expect = 2e-09
Identities = 20/135 (14%), Positives = 43/135 (31%), Gaps = 10/135 (7%)
Query: 519 PSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPK 578
V + ++ + AP L VV E N++W+ +
Sbjct: 74 TVDIVTLRVLCREGVRWRVMAIQDFKPFENLRL-MAPISLQVVHVETHR--CNISWEISQ 130
Query: 579 SANGQISGYTILYSSDPNTDQWIE---ESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGS 635
+++ + W E ++ + + L P Y F+++ + G
Sbjct: 131 ASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQGE 190
Query: 636 ----SPYSSTVTWTT 646
SP+S + + T
Sbjct: 191 FTTWSPWSQPLAFRT 205
Score = 55.6 bits (133), Expect = 7e-09
Identities = 29/151 (19%), Positives = 53/151 (35%), Gaps = 17/151 (11%)
Query: 116 QGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHV-PSPPLNVNIPVVGTSSLLVTW 174
Q L T RV+ + +P +++ P+++ + V T ++W
Sbjct: 70 QKLTTVDIVTLRVLCREGVRW---RVMAIQDFKPFENLRLMAPISLQVVHVETHRCNISW 126
Query: 175 EKPTVTNGEIKH--YTLYYLEEDTSVE----RHVVTPQLSYELTGLSHFTLYSIWVVAHN 228
E ++ +H + L + E + Q L L+ T Y V
Sbjct: 127 EISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKP 186
Query: 229 GNGAGTT----SQELSVQTLSDKPSEPPANS 255
G TT SQ L+ +T KP+ ++
Sbjct: 187 LQGEFTTWSPWSQPLAFRT---KPAALGKDT 214
Score = 53.3 bits (127), Expect = 5e-08
Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 15/113 (13%)
Query: 448 LIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGA-SNPRYKYIN 506
L+ P+ L+ + + ISW + F++H + R +
Sbjct: 106 LMAPISLQVVHVETHRCNISWEISQASHYFERH----LEFEARTLSPGHTWEEAPLLTLK 161
Query: 507 ANITSVQINDLRPSTQYEFTVKVVRAKKE-------SEWSMIVLNTTQEAAPA 552
+ + L P TQYEF VR K S WS + T+ AA
Sbjct: 162 QKQEWICLETLTPDTQYEFQ---VRVKPLQGEFTTWSPWSQPLAFRTKPAALG 211
Score = 46.7 bits (110), Expect = 7e-06
Identities = 25/150 (16%), Positives = 40/150 (26%), Gaps = 11/150 (7%)
Query: 11 LAISDMDPSSSTPPNQYHLTSTTSMTASPLDTSTGSIEAINETLTLPSAPQSVSAIMVGP 70
L + D T + L + + AP S+ + V
Sbjct: 62 LILGAPDSQKLTTVDIVTLRVLCREGVRWRVMAIQDFKPFENLR--LMAPISLQVVHVET 119
Query: 71 RSVALRWLPPTL--PRGEILVYCVLYKREGSERERAYNATARV---EAIIQGLHPNTSYT 125
+ W L + G E A T + ++ L P+T Y
Sbjct: 120 HRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYE 179
Query: 126 FRVVAYNALGAGLA----SSALPVKTEPED 151
F+V G S L +T+P
Sbjct: 180 FQVRVKPLQGEFTTWSPWSQPLAFRTKPAA 209
Score = 46.3 bits (109), Expect = 9e-06
Identities = 13/178 (7%), Positives = 43/178 (24%), Gaps = 21/178 (11%)
Query: 173 TWEKPTVTNGEIKHYTLYYLEEDTSVERHVVT----------PQLSYELTGLSHFTLYSI 222
W + + ++ + + L+ + ++
Sbjct: 21 VWSQDGALQDTSCQVHAWPDRRRWQQTCELLPVSQASWACNLILGAPDSQKLTTVDIVTL 80
Query: 223 WVVAHNGNGAGTTSQELSVQTLSDKPSEPPAN---------SITVRWQPPSRRGQNGIIT 273
V+ G + + + + P + + W+
Sbjct: 81 RVLCREGVRWRVMAIQDFKPFENLRL-MAPISLQVVHVETHRCNISWEISQASHYFERHL 139
Query: 274 GYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGS-GPATDW 330
++ R ++ +T + + L T Y+ ++ + G + W
Sbjct: 140 EFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQGEFTTWSPW 197
Score = 38.2 bits (88), Expect = 0.004
Identities = 25/183 (13%), Positives = 42/183 (22%), Gaps = 18/183 (9%)
Query: 255 SITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRR------LYVITGLNK 308
I+ W T ++ + + + L
Sbjct: 17 QISCVWSQ----DGALQDTSCQVHAWPDRRRWQQTCELLPVSQASWACNLILGAPDSQKL 72
Query: 309 STTYQIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTP 368
+T + L + G W E P SL+ +SW
Sbjct: 73 TTVDIVTLRVLCREGVR----WRVMAIQDFKPFENLRLMAPISLQVVHVETHRCNISWEI 128
Query: 369 PADQSIMVRGFTL---GWGKGVPDEFVKQI-LDVKQRSDEITGLEPNSDYVISLRAFNEM 424
R G E + L KQ + L P++ Y +R
Sbjct: 129 SQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQ 188
Query: 425 GDG 427
G+
Sbjct: 189 GEF 191
>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine
receptor, sugarbridge, fibronectine domain, signaling,
cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC;
2.80A {Homo sapiens}
Length = 219
Score = 57.1 bits (137), Expect = 2e-09
Identities = 31/202 (15%), Positives = 59/202 (29%), Gaps = 30/202 (14%)
Query: 69 GPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAIIQGLHPNTSYTFRV 128
P ++ L W + C L++ + Y + H F V
Sbjct: 24 HPSTLTLTWQDQYEELKDEATSCSLHRSAHNATHATYTCH------MDVFHFMADDIFSV 77
Query: 129 VAYNALGAGLASSALPVKTEPEDHV-PSPPLNVNIPVVGTSSLLVTWEKP------TVTN 181
+ G S + + P+PP +V V + ++W +
Sbjct: 78 QITDQSGQ---YSQECGSFLLAESIKPAPPFDVT--VTFSGQYQISWRSDYEDPAFYMLK 132
Query: 182 GEIKHYTLYYLEEDTSVER------HVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTT 235
G++++ Y D V + +S + Y + V A G+
Sbjct: 133 GKLQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKDSSYELQVRAGPMPGSSYQ 192
Query: 236 ------SQELSVQTLSDKPSEP 251
S + QT S++ E
Sbjct: 193 GTWSEWSDPVIFQTQSEELKEH 214
Score = 49.4 bits (117), Expect = 1e-06
Identities = 22/152 (14%), Positives = 45/152 (29%), Gaps = 20/152 (13%)
Query: 513 QINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNL 572
++ F+V++ + + P + P D+TV +
Sbjct: 63 HMDVFHFMADDIFSVQITDQSGQYSQECGSFLLAESIKP-APPFDVTVTFSGQ----YQI 117
Query: 573 NWQPPKSANGQISG-----YTILYSSDPNT----DQWIEESVVGDKMSTNVRGLEPGRIY 623
+W+ Y + Y + + + SV +S Y
Sbjct: 118 SWRSDYEDPAFYMLKGKLQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKDSSY 177
Query: 624 YFKIKARNSAGS------SPYSSTVTWTTASD 649
+++A GS S +S V + T S+
Sbjct: 178 ELQVRAGPMPGSSYQGTWSEWSDPVIFQTQSE 209
Score = 43.6 bits (102), Expect = 8e-05
Identities = 28/157 (17%), Positives = 49/157 (31%), Gaps = 25/157 (15%)
Query: 409 EPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISW 468
+D + S++ ++ G Q+ S P P + V +ISW
Sbjct: 68 HFMADDIFSVQITDQSGQYSQECGSFLLAESIKPAPPFDV--------TVTFSGQYQISW 119
Query: 469 IDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANI----TSVQINDLRPSTQYE 524
+ D + Y ++Y + + ++ S+ + R + YE
Sbjct: 120 -RSDYEDPAFYMLKGKLQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKDSSYE 178
Query: 525 FTVKVVRAKKE---------SEWSMIVLNTTQEAAPA 552
VRA SEWS V+ TQ
Sbjct: 179 LQ---VRAGPMPGSSYQGTWSEWSDPVIFQTQSEELK 212
Score = 40.9 bits (95), Expect = 6e-04
Identities = 18/120 (15%), Positives = 34/120 (28%), Gaps = 21/120 (17%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLPRGEI-----LVYCVLYKREGSERERAYNAT--- 108
P+ P V+ G + W L Y + Y+ G +
Sbjct: 101 PAPPFDVTVTFSG--QYQISWRSDYEDPAFYMLKGKLQYELQYRNRGDPWAVSPRRKLIS 158
Query: 109 ---ARVEAIIQGLHPNTSYTFRVVAYNALGAGLA------SSALPVKTEPEDHVPSPPLN 159
V + ++SY +V A G+ S + +T+ E+ +
Sbjct: 159 VDSRSVSLLPLEFRKDSSYELQVRAGPMPGSSYQGTWSEWSDPVIFQTQSEE--LKEHHH 216
Score = 32.4 bits (73), Expect = 0.40
Identities = 22/140 (15%), Positives = 41/140 (29%), Gaps = 28/140 (20%)
Query: 328 TDWFSAETFSQDLGEFTV-----PDIPASLKARPGGPSSIIVSWTPPADQS--------- 373
+ +SQ+ G F + P P + G +SW +
Sbjct: 78 QITDQSGQYSQECGSFLLAESIKPAPPFDVTVTFSG--QYQISWRSDYEDPAFYMLKGKL 135
Query: 374 ---IMVRGFTLGWGKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQK 430
+ R W + + +D + S +S Y + +RA G Q
Sbjct: 136 QYELQYRNRGDPWAVSPRRKLIS--VDSRSVSLLPLEFRKDSSYELQVRAGPMPGSSYQG 193
Query: 431 YES-------LRTRNEPPPQ 443
S +T++E +
Sbjct: 194 TWSEWSDPVIFQTQSEELKE 213
>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor,
fibronectin type 3 fold, membrane and SOL glycosylation,
immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens}
PDB: 3di3_B* 3di2_B*
Length = 223
Score = 56.7 bits (136), Expect = 4e-09
Identities = 23/130 (17%), Positives = 50/130 (38%), Gaps = 10/130 (7%)
Query: 523 YEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANG 582
+ + V +K I L T + P DL+VV +EG + +
Sbjct: 87 GKSNICVKVGEKSLTCKKIDLTTIVKPEA---PFDLSVVYREGANDF-VVTFNTSHLQKK 142
Query: 583 QISG--YTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGS----S 636
+ + + Y + + ++W ++ K++ R L+P +Y K+++ S
Sbjct: 143 YVKVLMHDVAYRQEKDENKWTHVNLSSTKLTLLQRKLQPAAMYEIKVRSIPDHYFKGFWS 202
Query: 637 PYSSTVTWTT 646
+S + + T
Sbjct: 203 EWSPSYYFRT 212
Score = 47.5 bits (112), Expect = 4e-06
Identities = 18/113 (15%), Positives = 45/113 (39%), Gaps = 5/113 (4%)
Query: 21 STPPNQYHLTSTTSMTASPLDTSTGSIEAINETLTLPSAPQSVSAIMV-GPRSVALRWLP 79
++ L +++ + S + T+ P AP +S + G + +
Sbjct: 77 FIETKKFLLIGKSNICVKVGEKSLTCKKIDLTTIVKPEAPFDLSVVYREGANDFVVTFNT 136
Query: 80 PTLPRGEI--LVYCVLYKREGSERERAY--NATARVEAIIQGLHPNTSYTFRV 128
L + + L++ V Y++E E + + ++ ++ + + L P Y +V
Sbjct: 137 SHLQKKYVKVLMHDVAYRQEKDENKWTHVNLSSTKLTLLQRKLQPAAMYEIKV 189
Score = 47.5 bits (112), Expect = 5e-06
Identities = 31/195 (15%), Positives = 60/195 (30%), Gaps = 22/195 (11%)
Query: 167 TSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTPQLSYELTGLSHFTLYSIWVVA 226
SL +E P V ++ L E V+ F L
Sbjct: 36 QHSLTCAFEDPDVNTTNLEFEICGALVE---VKCLNFRKLQEIYFIETKKFLLIG-KSNI 91
Query: 227 HNGNGAGTTSQELSVQTLSDKPSEP---------PANSITVRWQPPSRRGQNGIITGYKL 277
G + + + T KP P AN V + + + + + +
Sbjct: 92 CVKVGEKSLTCKKIDLTTIVKPEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKVLMHDV 151
Query: 278 RYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWA-MNVNGSGPATDWFSAETF 336
Y+++ + V + + + L + Y+IK+ + + G ++W S +
Sbjct: 152 AYRQEKDENKW-THVNLSSTKLTLLQRKLQPAAMYEIKVRSIPDHYFKGFWSEW-SPSYY 209
Query: 337 SQDLGEFTVPDIPAS 351
F P+I S
Sbjct: 210 ------FRTPEINNS 218
Score = 46.3 bits (109), Expect = 1e-05
Identities = 19/116 (16%), Positives = 37/116 (31%), Gaps = 15/116 (12%)
Query: 450 PPMGLKSEVLSPY-SMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINAN 508
P L +++ Q+ + + V Y + + +++
Sbjct: 115 APFDLSVVYREGANDFVVTF----NTSHLQKKYVKVLMHDVAYRQEKDENKWTHVNLSST 170
Query: 509 ITSVQINDLRPSTQYEFTVKVVRAKKE-------SEWSMIVLNTTQEAAPASAPRD 557
++ L+P+ YE VR+ + SEWS T E +S D
Sbjct: 171 KLTLLQRKLQPAAMYEIK---VRSIPDHYFKGFWSEWSPSYYFRTPEINNSSGEMD 223
Score = 35.9 bits (82), Expect = 0.028
Identities = 27/200 (13%), Positives = 56/200 (28%), Gaps = 21/200 (10%)
Query: 233 GTTSQELSVQTLSDKPSEPPANSITVRWQPPSRRGQNGI--------ITGYKLRYKKKDV 284
G+ + Q + +E S + Q Q+ + + L ++
Sbjct: 1 GSHMESGYAQNGDLEDAELDDYSFSCYSQLEVNGSQHSLTCAFEDPDVNTTNLEFEICGA 60
Query: 285 KKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLGEFT 344
+ ++ T K K G S DL
Sbjct: 61 LVEVKCLNFRKLQEIYFIET---KKFLLIGKSNICVKVGEK------SLTCKKIDLTTIV 111
Query: 345 VPDIPASLKARP-GGPSSIIVSWTPPADQSIMVRGFTL---GWGKGVPDEFVKQILDVKQ 400
P+ P L G + +V++ Q V+ + +++ L +
Sbjct: 112 KPEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDENKWTHVNLSSTK 171
Query: 401 RSDEITGLEPNSDYVISLRA 420
+ L+P + Y I +R+
Sbjct: 172 LTLLQRKLQPAAMYEIKVRS 191
>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine
receptor,interleukin-4, cytokine/receptor complex; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B*
3bpn_B* 3bpo_B*
Length = 207
Score = 55.0 bits (132), Expect = 1e-08
Identities = 27/158 (17%), Positives = 58/158 (36%), Gaps = 15/158 (9%)
Query: 500 PRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLT 559
P + + ++D+ + Y + A ++ W ++ P AP +LT
Sbjct: 51 PENNGGAGCVCHLLMDDVVSADNYTLDL---WAGQQLLWKGSF-KPSEHVKP-RAPGNLT 105
Query: 560 VVSKEGDPSLVNLNWQPPKSANGQISG---YTILYSSDPNTDQWIEESVVGDKMSTNV-- 614
V + D + L W P + + Y + S+ + + +V + S +
Sbjct: 106 VHTNVSDT--LLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAA 163
Query: 615 RGLEPGRIYYFKIKARNSAGS---SPYSSTVTWTTASD 649
L+ G Y +++A A + S +S + W +
Sbjct: 164 STLKSGISYRARVRAWAQAYNTTWSEWSPSTKWHNSYR 201
Score = 54.3 bits (130), Expect = 2e-08
Identities = 25/184 (13%), Positives = 53/184 (28%), Gaps = 27/184 (14%)
Query: 173 TWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTPQ--------LSYELTGLSHFTLYSIWV 224
W+ TN + LY L S E H P+ + + Y++ +
Sbjct: 20 EWKMNGPTNCSTELRLLYQLVFLLS-EAHTCIPENNGGAGCVCHLLMDDVVSADNYTLDL 78
Query: 225 VAHNGNGAGTTSQ-ELSVQTLSDKPSEPPAN---------SITVRWQPPSRRGQNGIITG 274
A + + V+ P N ++ + W P
Sbjct: 79 WAGQQLLWKGSFKPSEHVKP------RAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHL 132
Query: 275 -YKLRYKKKDVKKD-KGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFS 332
Y + ++ D + VT + L +Y+ ++ A + ++W
Sbjct: 133 TYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSP 192
Query: 333 AETF 336
+ +
Sbjct: 193 STKW 196
Score = 54.3 bits (130), Expect = 2e-08
Identities = 26/147 (17%), Positives = 45/147 (30%), Gaps = 19/147 (12%)
Query: 116 QGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHV-PSPPLNVNIPVVGTSSLLVTW 174
+ +YT + A L +P +HV P P N+ + + +LL+TW
Sbjct: 66 DDVVSADNYTLDLWAGQQLL-------WKGSFKPSEHVKPRAPGNLTVHTNVSDTLLLTW 118
Query: 175 EKPTVTNGEIKHYTLYYLE--------EDTSVERHVVTPQLSYELTGLSHFTLYSIWVVA 226
P + + ++ Y + + + P L + L Y V A
Sbjct: 119 SNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRA 178
Query: 227 HNGNGAGT---TSQELSVQTLSDKPSE 250
T S +P E
Sbjct: 179 WAQAYNTTWSEWSPSTKWHNSYREPFE 205
Score = 50.8 bits (121), Expect = 3e-07
Identities = 30/205 (14%), Positives = 57/205 (27%), Gaps = 29/205 (14%)
Query: 360 SSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSD-----EITGLEPNSDY 414
S W + L + E I + + + + +Y
Sbjct: 15 SISTCEWKMNGPTNCSTELRLLYQLVFLLSEAHTCIPENNGGAGCVCHLLMDDVVSADNY 74
Query: 415 VISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLP 474
+ L A ++ S + P+ P L ++ ++W + P
Sbjct: 75 TLDLWAGQQLLWK----GSFKPSEHVKPR------APGNLTVHTNVSDTLLLTWSNPYPP 124
Query: 475 DQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANITSVQI--NDLRPSTQYEFTVKVVRA 532
D + + Y V ++ R + S++I + L+ Y V RA
Sbjct: 125 DNYLYNHLT---YAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARV---RA 178
Query: 533 KKE------SEWSMIVLNTTQEAAP 551
+ SEWS P
Sbjct: 179 WAQAYNTTWSEWSPSTKWHNSYREP 203
Score = 43.9 bits (103), Expect = 5e-05
Identities = 26/185 (14%), Positives = 55/185 (29%), Gaps = 23/185 (12%)
Query: 254 NSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYV----ITGLNKS 309
+ T W+ + T +L Y+ + + + V + + +
Sbjct: 15 SISTCEWKMNGPTNCS---TELRLLYQLVFLLSEAHTCIPENNGGAGCVCHLLMDDVVSA 71
Query: 310 TTYQIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPP 369
Y + LWA S E P P +L +++++W+ P
Sbjct: 72 DNYTLDLWAGQQLLW----------KGSFKPSEHVKPRAPGNLTVHTNVSDTLLLTWSNP 121
Query: 370 ADQSIMVRGFTLG----WGKGVPDEFVKQILDVKQRSDEITG--LEPNSDYVISLRAFNE 423
+ W + P +F + + S I L+ Y +RA+ +
Sbjct: 122 YPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQ 181
Query: 424 MGDGP 428
+
Sbjct: 182 AYNTT 186
Score = 43.5 bits (102), Expect = 9e-05
Identities = 22/105 (20%), Positives = 32/105 (30%), Gaps = 10/105 (9%)
Query: 57 PSAPQSVSAIMVGPRSVALRW---LPPTLPRGEILVYCVLYKREGSERE-RAYNATA--- 109
P AP +++ ++ L W PP L Y V E + R YN T
Sbjct: 98 PRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEP 157
Query: 110 RVEAIIQGLHPNTSYTFRVVAYNALGAGLAS---SALPVKTEPED 151
+ L SY RV A+ S + +
Sbjct: 158 SLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPSTKWHNSYRE 202
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain,
carbohydrase, horizontal gene transfer, hydrolase; NMR
{Bacillus circulans} SCOP: b.1.2.1
Length = 88
Score = 51.9 bits (125), Expect = 1e-08
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 13/98 (13%)
Query: 550 APASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDK 609
AP +AP +L ++ S + L+W + N ++GY + + T +V G
Sbjct: 3 AP-TAPTNLASTAQ--TTSSITLSWTAS-TDNVGVTGYDVYNGTALAT------TVTGT- 51
Query: 610 MSTNVRGLEPGRIYYFKIKARNSAG-SSPYSSTVTWTT 646
+ + GL Y F +KA+++AG S S+ V+ T
Sbjct: 52 -TATISGLAADTSYTFTVKAKDAAGNVSAASNAVSVKT 88
Score = 51.5 bits (124), Expect = 2e-08
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAIIQ 116
P+AP ++++ S+ L W T G + Y V + TA +
Sbjct: 4 PTAPTNLASTAQTTSSITLSWTASTDNVG-VTGYDVY--NGTALATTVTGTTATIS---- 56
Query: 117 GLHPNTSYTFRVVAYNALG-AGLASSALPVKT 147
GL +TSYTF V A +A G AS+A+ VKT
Sbjct: 57 GLAADTSYTFTVKAKDAAGNVSAASNAVSVKT 88
Score = 43.8 bits (104), Expect = 9e-06
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Query: 154 PSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTPQLSYELTG 213
P+ P N+ TSS+ ++W T N + Y +Y + ++G
Sbjct: 4 PTAPTNLASTAQTTSSITLSWTAST-DNVGVTGYDVY--NGTALA---TTVTGTTATISG 57
Query: 214 LSHFTLYSIWVVAHNGNG-AGTTSQELSVQT 243
L+ T Y+ V A + G S +SV+T
Sbjct: 58 LAADTSYTFTVKAKDAAGNVSAASNAVSVKT 88
Score = 35.3 bits (82), Expect = 0.008
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Query: 253 ANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTY 312
+SIT+ W + N +TGY DV T G I+GL T+Y
Sbjct: 17 TSSITLSWTAST---DNVGVTGY-------DVYNGTALATTVTGTT--ATISGLAADTSY 64
Query: 313 QIKLWAMNVNG 323
+ A + G
Sbjct: 65 TFTVKAKDAAG 75
Score = 34.6 bits (80), Expect = 0.014
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 344 TVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSD 403
P P +L + SSI +SWT D V G+ + G V +
Sbjct: 2 MAPTAPTNLASTAQTTSSITLSWTASTDNVG-VTGYDVYNGT-------ALATTVTGTTA 53
Query: 404 EITGLEPNSDYVISLRAFNEMG 425
I+GL ++ Y +++A + G
Sbjct: 54 TISGLAADTSYTFTVKAKDAAG 75
Score = 28.0 bits (63), Expect = 3.4
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 510 TSVQINDLRPSTQYEFTVKVV-RAKKESEWSMIVLNTT 546
T+ I+ L T Y FTVK A S S V T
Sbjct: 51 TTATISGLAADTSYTFTVKAKDAAGNVSAASNAVSVKT 88
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 112
Score = 52.3 bits (125), Expect = 2e-08
Identities = 26/114 (22%), Positives = 38/114 (33%), Gaps = 15/114 (13%)
Query: 147 TEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTPQ 206
+ +++ V TSSL + WE P G + L + S P
Sbjct: 2 SSGSSGSRPRLSQLSVTDVTTSSLRLNWEAP---PGAFDSFLLRFGVPSPSTLEPHPRPL 58
Query: 207 L-----------SYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPS 249
L S L L TLYS+ + G + Q + +TLS S
Sbjct: 59 LQRELMVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQ-GTARTLSGPSS 111
Score = 51.9 bits (124), Expect = 2e-08
Identities = 19/112 (16%), Positives = 34/112 (30%), Gaps = 15/112 (13%)
Query: 545 TTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSD--------PN 596
+ + P L+V + S + LNW+ P G + + + P
Sbjct: 4 GSSGSRPR--LSQLSVT--DVTTSSLRLNWEAP---PGAFDSFLLRFGVPSPSTLEPHPR 56
Query: 597 TDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTAS 648
E V G + S +R L G +Y + + T +
Sbjct: 57 PLLQRELMVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTARTLSG 108
Score = 50.0 bits (119), Expect = 1e-07
Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 6/104 (5%)
Query: 345 VPDIPASLKARPGGPSSIIVSWTPPAD--QSIMVRGFTLGWGKGVPDEFVKQILDVK--- 399
+ L SS+ ++W P S ++R P ++
Sbjct: 8 SRPRLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPG 67
Query: 400 -QRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPP 442
+ S + L + Y ++L + RT + P
Sbjct: 68 TRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTARTLSGPSS 111
Score = 47.7 bits (113), Expect = 7e-07
Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 12/86 (13%)
Query: 249 SEPPANSITVRWQPPSRRGQNGIITGYKLRYKKKD-------VKKDKGETVTTAGDRRLY 301
++ +S+ + W+ P G + LR+ + + G R
Sbjct: 18 TDVTTSSLRLNWEAPP-----GAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSA 72
Query: 302 VITGLNKSTTYQIKLWAMNVNGSGPA 327
V+ L T Y + L+ + +
Sbjct: 73 VLRDLRSGTLYSLTLYGLRGPHKADS 98
Score = 43.4 bits (102), Expect = 2e-05
Identities = 12/108 (11%), Positives = 26/108 (24%), Gaps = 14/108 (12%)
Query: 53 TLTLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVE 112
+ +S V S+ L W P G + + + +
Sbjct: 5 SSGSRPRLSQLSVTDVTTSSLRLNWEAPP---GAFDSFLLRFGVPSPSTLEPHPRPLLQR 61
Query: 113 ----------AIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPE 150
A+++ L T Y+ + + +T
Sbjct: 62 ELMVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQG-TARTLSG 108
Score = 40.0 bits (93), Expect = 3e-04
Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 18/100 (18%)
Query: 460 SPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGAS--------NPRYKYINANITS 511
+ S+R++W P +L+R+ ++ R + S
Sbjct: 21 TTSSLRLNW---EAPPG------AFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHS 71
Query: 512 VQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAP 551
+ DLR T Y T+ +R +++ S+ T
Sbjct: 72 AVLRDLRSGTLYSLTLYGLRGPHKAD-SIQGTARTLSGPS 110
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 53.7 bits (129), Expect = 1e-07
Identities = 21/105 (20%), Positives = 32/105 (30%), Gaps = 1/105 (0%)
Query: 54 LTLPSAPQSVSAIMVGPRSVALRWLPPTLPRG-EILVYCVLYKREGSERERAYNATARVE 112
+ P P+ + +V L W PP L G + Y + + +
Sbjct: 7 VPEPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKSRYTY 66
Query: 113 AIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPP 157
I+GL Y FR++A N G P D
Sbjct: 67 TTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKRRR 111
Score = 52.1 bits (125), Expect = 5e-07
Identities = 23/97 (23%), Positives = 33/97 (34%), Gaps = 9/97 (9%)
Query: 553 SAPRDLTVVSKEGDPSLVNLNWQPPKSANGQ-ISGYTILYSSDPNTDQWIEESVVGDKMS 611
PR + + + V L+W+PP G ++ YTI W
Sbjct: 11 EPPRFPIIENILDEA--VILSWKPPALDGGSLVTNYTIEKREAMG-GSWSP---CAKSRY 64
Query: 612 T--NVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTT 646
T + GL G+ Y F+I A N G S
Sbjct: 65 TYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVL 101
Score = 47.5 bits (113), Expect = 1e-05
Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 13/95 (13%)
Query: 239 LSVQTLSDKPSEPPA-----NSITVRWQPPSRRGQNGIITGYKLRYKKK--DVKKDKGET 291
++ + P P ++ + W+PP+ G ++T Y + ++ ++
Sbjct: 4 VADVPEPEPPRFPIIENILDEAVILSWKPPALDG-GSLVTNYTIEKREAMGGSWSPCAKS 62
Query: 292 VTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGP 326
T I GL Y+ ++ A N +G
Sbjct: 63 RYT-----YTTIEGLRAGKQYEFRIIAENKHGQSK 92
Score = 45.6 bits (108), Expect = 5e-05
Identities = 19/152 (12%), Positives = 42/152 (27%), Gaps = 2/152 (1%)
Query: 154 PSPPLNVNIPVVGTSSLLVTWEKPTVTNG-EIKHYTLYYLEEDTSVERHV-VTPQLSYEL 211
P PP I + +++++W+ P + G + +YT+ E + +
Sbjct: 10 PEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKSRYTYTTI 69
Query: 212 TGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPANSITVRWQPPSRRGQNGI 271
GL Y ++A N +G + + + + R
Sbjct: 70 EGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKRRRGYDVDEQGKIVRGKGTVS 129
Query: 272 ITGYKLRYKKKDVKKDKGETVTTAGDRRLYVI 303
+ + + Y I
Sbjct: 130 SNYDNYVFDIWKQYYPQPVEIKHDHVLDHYDI 161
Score = 41.7 bits (98), Expect = 7e-04
Identities = 21/138 (15%), Positives = 41/138 (29%), Gaps = 4/138 (2%)
Query: 344 TVPDIPASLKARPGGPSSIIVSWTPPA-DQSIMVRGFTLGWGKGVPDEFVKQILDVKQRS 402
P+ P ++I+SW PPA D +V +T+ + + + +
Sbjct: 8 PEPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSW-SPCAKSRYTY 66
Query: 403 DEITGLEPNSDYVISLRAFNEMGDGPQKYES--LRTRNEPPPQAPKVLIPPMGLKSEVLS 460
I GL Y + A N+ G + + + + + G
Sbjct: 67 TTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKRRRGYDVDEQGKIVRGKG 126
Query: 461 PYSMRISWIDTTLPDQFQ 478
S + Q+
Sbjct: 127 TVSSNYDNYVFDIWKQYY 144
>3dlq_R Interleukin-22 receptor subunit alpha-1; cytokine-receptor complex,
fibronectin-III, cytokine, glycoprotein, polymorphism,
secreted, membrane; 1.90A {Homo sapiens} PDB: 3dgc_R*
Length = 211
Score = 51.2 bits (122), Expect = 3e-07
Identities = 32/189 (16%), Positives = 57/189 (30%), Gaps = 22/189 (11%)
Query: 149 PEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTS----VERHVVT 204
PED +V ++L TW+ Y++ Y +
Sbjct: 1 PED-PSDLLQHVKFQSSNFENIL-TWD-SGPEGTPDTVYSIEYKTYGERDWVAKKGCQRI 57
Query: 205 PQLSYELTG--LSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPA-------NS 255
+ S LT + LY V A + G T +L +PP S
Sbjct: 58 TRKSCNLTVETGNLTELYYARVTAVSAGGRSATKMTDRFSSLQHTTLKPPDVTCISKVRS 117
Query: 256 ITVRWQPPSR--RGQNGIITGYKLRYK----KKDVKKDKGETVTTAGDRRLYVITGLNKS 309
I + P R +G + + +++ ++ + G +R Y GL
Sbjct: 118 IQMIVHPTPTPIRAGDGHRLTLEDIFHDLFYHLELQVNRTYQMHLGGKQREYEFFGLTPD 177
Query: 310 TTYQIKLWA 318
T + +
Sbjct: 178 TEFLGTIMI 186
Score = 48.9 bits (116), Expect = 2e-06
Identities = 32/195 (16%), Positives = 57/195 (29%), Gaps = 26/195 (13%)
Query: 248 PSEPPAN--------SITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRR 299
PS+ + + W + + + Y ++D KG T
Sbjct: 4 PSDLLQHVKFQSSNFENILTWDSGPEGTPDTVYSIEYKTYGERDWVAKKGCQRITRKSCN 63
Query: 300 LYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGP 359
L V T N + Y ++ A++ G + + FS P +
Sbjct: 64 LTVET-GNLTELYYARVTAVSAGGR---SATKMTDRFSSL---QHTTLKPPDVTCISKV- 115
Query: 360 SSIIVSWTPPADQSIMVRGFTLGWGKGVPD----------EFVKQILDVKQRSDEITGLE 409
SI + P G L D + L KQR E GL
Sbjct: 116 RSIQMIVHPTPTPIRAGDGHRLTLEDIFHDLFYHLELQVNRTYQMHLGGKQREYEFFGLT 175
Query: 410 PNSDYVISLRAFNEM 424
P+++++ ++
Sbjct: 176 PDTEFLGTIMILVPT 190
Score = 48.2 bits (114), Expect = 2e-06
Identities = 35/212 (16%), Positives = 60/212 (28%), Gaps = 25/212 (11%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAI-- 114
Q V ++ L W VY + YK G A R+
Sbjct: 5 SDLLQHVKFQSSNFENI-LTWDSGPEG-TPDTVYSIEYKTYGERDWVAKKGCQRITRKSC 62
Query: 115 ---IQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLL 171
++ + Y RV A +A G H P +V + S+
Sbjct: 63 NLTVETGNLTELYYARVTAVSAGGRSATKMTDRF--SSLQHTTLKPPDVTC-ISKVRSIQ 119
Query: 172 VTWEKPTVTNGEIKHYTLYY------------LEEDTSVERHVVTPQLSYELTGLSHFTL 219
+ + L L+ + + + H+ Q YE GL+ T
Sbjct: 120 MIVHPTPTPIRAGDGHRLTLEDIFHDLFYHLELQVNRTYQMHLGGKQREYEFFGLTPDTE 179
Query: 220 Y--SIWVVAHNGNGAGTTSQELSVQTLSDKPS 249
+ +I ++ V+TL D+
Sbjct: 180 FLGTIMILVPTWAKESAPYMCR-VKTLPDRTW 210
Score = 32.4 bits (73), Expect = 0.42
Identities = 25/196 (12%), Positives = 61/196 (31%), Gaps = 19/196 (9%)
Query: 363 IVSWTPPADQSIMVRGFTLGWGKGVPDE--FVKQILDVKQRSDEITG--LEPNSDYVISL 418
I++W + + +++ + + K + ++S +T Y +
Sbjct: 21 ILTWDSGPEGTPDTV-YSIEYKTYGERDWVAKKGCQRITRKSCNLTVETGNLTELYYARV 79
Query: 419 RAFNEMGDGP-QKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQF 477
A + G + + + + P V S+++ T P +
Sbjct: 80 TAVSAGGRSATKMTDRFSSLQHTTLKPPDVTCISKV--------RSIQMIVHPTPTPIRA 131
Query: 478 QQHGE---EGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVV--RA 532
E + + Y L + ++ + L P T++ T+ ++
Sbjct: 132 GDGHRLTLEDIFHDLFYHLELQVNRTYQMHLGGKQREYEFFGLTPDTEFLGTIMILVPTW 191
Query: 533 KKESEWSMIVLNTTQE 548
KES M + T +
Sbjct: 192 AKESAPYMCRVKTLPD 207
Score = 32.0 bits (72), Expect = 0.45
Identities = 16/107 (14%), Positives = 33/107 (30%), Gaps = 13/107 (12%)
Query: 551 PASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKM 610
P+ + + S + L W + Y+I Y W+ + G +
Sbjct: 4 PSDLLQHVKFQSSNFENIL---TWDSGPE-GTPDTVYSIEYK-TYGERDWV--AKKGCQR 56
Query: 611 STNVR------GLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASDMQ 651
T +YY ++ A ++ G S T +++
Sbjct: 57 ITRKSCNLTVETGNLTELYYARVTAVSAGGRSATKMTDRFSSLQHTT 103
>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha;
cytokine, leukemia inhibitory factor, cytokine receptor;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 109
Score = 48.5 bits (115), Expect = 3e-07
Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 7/100 (7%)
Query: 555 PRDLTVVSKEGDPSLVNLNWQPPKSANGQIS---GYTILYSSDPNTDQWIEESVVGDKMS 611
P ++ +P + + WQ P + S + + Y DQW + + + +
Sbjct: 11 PENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPL-ILDQW-QHVELSNGTA 68
Query: 612 TNVRGLEPGRIYYFKIKARNSAGS--SPYSSTVTWTTASD 649
+ G+ Y ++ A+++ S +S T ++
Sbjct: 69 HTITDAYAGKEYIIQVAAKDNEIGTWSDWSVAAHATPWTE 108
Score = 48.1 bits (114), Expect = 5e-07
Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 5/77 (6%)
Query: 57 PSAPQ--SVSAIMVGPRSVALRWLPPTL---PRGEILVYCVLYKREGSERERAYNATARV 111
P P+ + PR + + W P+ P L + + Y+ ++ + +
Sbjct: 8 PDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSNGT 67
Query: 112 EAIIQGLHPNTSYTFRV 128
I + Y +V
Sbjct: 68 AHTITDAYAGKEYIIQV 84
Score = 44.2 bits (104), Expect = 1e-05
Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 13/110 (11%)
Query: 149 PEDHV-PSPPLNVNIPVVGTSS--LLVTWEKPTVTNGEIKHYTL-----YYLEEDTSVER 200
P V P PP NV V ++ L VTW+ P+ T + + + L Y +
Sbjct: 2 PLGSVKPDPPENVVARPVPSNPRRLEVTWQTPS-TWPDPESFPLKFFLRYRPLILDQWQH 60
Query: 201 HVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGT---TSQELSVQTLSDK 247
++ ++ +T Y I V A + N GT S +++
Sbjct: 61 VELSNGTAHTITDAYAGKEYIIQVAAKD-NEIGTWSDWSVAAHATPWTEE 109
Score = 42.3 bits (99), Expect = 5e-05
Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 5/85 (5%)
Query: 247 KPSEPPANSITVRWQPP-SRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITG 305
+P + V WQ P + + LRY+ + + IT
Sbjct: 17 RPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLI---LDQWQHVELSNGTAHTITD 73
Query: 306 LNKSTTYQIKLWAMNVNGSGPATDW 330
Y I++ A + N G +DW
Sbjct: 74 AYAGKEYIIQVAAKD-NEIGTWSDW 97
Score = 37.7 bits (87), Expect = 0.002
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 6/80 (7%)
Query: 346 PDIPASLKARP--GGPSSIIVSWTPPADQSIMVRGFTLG---WGKGVPDEFVKQILDVKQ 400
PD P ++ ARP P + V+W P+ F L + + + + +
Sbjct: 8 PDPPENVVARPVPSNPRRLEVTWQTPSTWPDP-ESFPLKFFLRYRPLILDQWQHVELSNG 66
Query: 401 RSDEITGLEPNSDYVISLRA 420
+ IT +Y+I + A
Sbjct: 67 TAHTITDAYAGKEYIIQVAA 86
Score = 35.7 bits (82), Expect = 0.009
Identities = 20/104 (19%), Positives = 35/104 (33%), Gaps = 15/104 (14%)
Query: 450 PPMGL--KSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINA 507
PP + + +P + ++W P + + +RY L + +
Sbjct: 10 PPENVVARPVPSNPRRLEVTW---QTPSTWPDPESFPLKFFLRYRPL--ILDQWQHVELS 64
Query: 508 NITSVQINDLRPSTQYEFTVKVVRAKKE-----SEWSMIVLNTT 546
N T+ I D +Y V AK S+WS+ T
Sbjct: 65 NGTAHTITDAYAGKEYIIQ---VAAKDNEIGTWSDWSVAAHATP 105
>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine
phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine
phosphatase receptor type J; NMR {Homo sapiens}
Length = 104
Score = 48.1 bits (114), Expect = 4e-07
Identities = 21/101 (20%), Positives = 30/101 (29%), Gaps = 4/101 (3%)
Query: 55 TLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAI 114
+ V+A+ + S+ L W Y + E + A+
Sbjct: 6 SGAIQVFDVTAVNISATSLTLIWKVSDNESSSNYTYKIHVAGETDSSNLNVSEP---RAV 62
Query: 115 IQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPS 155
I GL +T Y V G L V T P PS
Sbjct: 63 IPGLRSSTFYNITVCPVLGDIEGTPGF-LQVHTPPVPSGPS 102
Score = 45.4 bits (107), Expect = 3e-06
Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 6/102 (5%)
Query: 344 TVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSD 403
+ + A +S+ + W ++S + + E L+V +
Sbjct: 6 SGAIQVFDVTAVNISATSLTLIWKVSDNESSSNYTYKIHV----AGETDSSNLNVSEPRA 61
Query: 404 EITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQAP 445
I GL ++ Y I++ +G + + T P P P
Sbjct: 62 VIPGLRSSTFYNITVCPVLGDIEGTPGFLQVHTP--PVPSGP 101
Score = 42.8 bits (100), Expect = 3e-05
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 2/83 (2%)
Query: 154 PSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTPQLSYELTG 213
+V + +SL + W+ N +YT + ++ + + G
Sbjct: 8 AIQVFDVTAVNISATSLTLIWKVSD--NESSSNYTYKIHVAGETDSSNLNVSEPRAVIPG 65
Query: 214 LSHFTLYSIWVVAHNGNGAGTTS 236
L T Y+I V G+ GT
Sbjct: 66 LRSSTFYNITVCPVLGDIEGTPG 88
Score = 38.5 bits (89), Expect = 8e-04
Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 12/105 (11%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANI 509
+ + +S S+ + W + + Y + A +N +
Sbjct: 10 QVFDVTAVNISATSLTLIW----------KVSDNESSSNYTY-KIHVAGETDSSNLNVSE 58
Query: 510 TSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQE-AAPAS 553
I LR ST Y TV V E + ++T + P+S
Sbjct: 59 PRAVIPGLRSSTFYNITVCPVLGDIEGTPGFLQVHTPPVPSGPSS 103
Score = 38.1 bits (88), Expect = 0.001
Identities = 12/111 (10%), Positives = 31/111 (27%), Gaps = 8/111 (7%)
Query: 545 TTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEES 604
++ + D+T V+ + + L W+ + + Y I + + + +
Sbjct: 2 SSGSSGA-IQVFDVTAVNI--SATSLTLIWKVSDNESSSNYTYKIHVAGETD-----SSN 53
Query: 605 VVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASDMQEAGG 655
+ + + GL Y + T + G
Sbjct: 54 LNVSEPRAVIPGLRSSTFYNITVCPVLGDIEGTPGFLQVHTPPVPSGPSSG 104
Score = 32.7 bits (74), Expect = 0.092
Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 8/94 (8%)
Query: 233 GTTSQELSVQTLSDKPSEPPANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETV 292
G++ ++Q A S+T+ W+ N + Y + V
Sbjct: 1 GSSGSSGAIQVFDVTAVNISATSLTLIWKVSD----NESSSNYTYKIHVAGETDSSNLNV 56
Query: 293 TTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGP 326
+ VI GL ST Y I + + + G
Sbjct: 57 SEPR----AVIPGLRSSTFYNITVCPVLGDIEGT 86
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 49.0 bits (115), Expect = 3e-06
Identities = 19/150 (12%), Positives = 50/150 (33%), Gaps = 12/150 (8%)
Query: 499 NPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDL 558
N Y+Y S E V V K +++ ++ P++L
Sbjct: 162 NKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYEQYTSSF--FIRDIIKPDPPKNL 219
Query: 559 TVVSKEGDPSLVNLNWQPPKSANGQISGYTILYS---SDPNTDQWIEESVVGDKMSTNVR 615
+ + V ++W+ P + + S +++ + + + +
Sbjct: 220 QL-KPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFT----DKTSA 274
Query: 616 GLEPGRIYYFKIKARNSAGSSPYS--STVT 643
+ + ++A++ SS +S ++V
Sbjct: 275 TVICRKNASISVRAQDRYYSSSWSEWASVP 304
Score = 39.7 bits (91), Expect = 0.002
Identities = 23/144 (15%), Positives = 48/144 (33%), Gaps = 12/144 (8%)
Query: 97 EGSERERAYNATARVEAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSP 156
G +E Y+ + ++ + V A + L + P P
Sbjct: 159 RGDNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKY---EQYTSSFFIRDIIKPDP 215
Query: 157 PLNVNI-PVVGTSSLLVTWEKPTVTNGEIKHYTL-----YYLEEDTSVERHVVTPQLSYE 210
P N+ + P+ + + V+WE P + +++L + + V T + S
Sbjct: 216 PKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFTDKTSAT 275
Query: 211 LTGLSHFTLYSIWVVAHNGNGAGT 234
+ SI V A + + +
Sbjct: 276 VI---CRKNASISVRAQDRYYSSS 296
Score = 39.3 bits (90), Expect = 0.003
Identities = 14/105 (13%), Positives = 32/105 (30%), Gaps = 8/105 (7%)
Query: 38 SPLDTSTGSIEAINETLTLPSAPQSVSA-IMVGPRSVALRWLPP----TLPRGEILVYCV 92
L + + P P+++ + R V + W P T L +CV
Sbjct: 194 HKLKYEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCV 253
Query: 93 LYKREGSERERAYNATARVEAIIQGLHPNTSYTFRVVAYNALGAG 137
+ + ++ T + + + + V A + +
Sbjct: 254 QVQGKSKREKKDRVFT---DKTSATVICRKNASISVRAQDRYYSS 295
>2csp_A RIM-BP2, RIM binding protein 2; FN3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 45.1 bits (106), Expect = 6e-06
Identities = 22/109 (20%), Positives = 36/109 (33%), Gaps = 18/109 (16%)
Query: 232 AGTTSQELSVQTLSDKPSEPPAN----------SITVRWQPPSRR---GQNGI-ITGYKL 277
+ S + TL P PP + +I V W+PP NG +TGY +
Sbjct: 1 GSSGSSGVEFSTLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGV 60
Query: 278 RYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGP 326
K + V E + D + L + + ++ G
Sbjct: 61 YAKGQRVA----EVIFPTADSTAVELVRLRSLEAKGVTVRTLSAQGESV 105
Score = 37.0 bits (85), Expect = 0.005
Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 10/111 (9%)
Query: 536 SEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPP------KSANGQISGYTI 589
S S V +T A P + P+D+TV P+ + ++W+PP S ++GY +
Sbjct: 2 SSGSSGVEFSTLPAGPPAPPQDVTV-QAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGV 60
Query: 590 LYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSS 640
+ D + + L ++ ++ G S S+
Sbjct: 61 YAKGQRVAEV---IFPTADSTAVELVRLRSLEAKGVTVRTLSAQGESVDSA 108
Score = 36.7 bits (84), Expect = 0.006
Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 11/114 (9%)
Query: 56 LPSAPQSVSAIM-VGPRSVALRWLPPTLP------RGEILVYCVLYKREGSERERAYNAT 108
P+ PQ V+ V P ++ + W PP L + Y V Y + E +
Sbjct: 17 PPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGV-YAKGQRVAEVIFPTA 75
Query: 109 ARVEAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTE---PEDHVPSPPLN 159
+ L + V +A G + S+ V E P PS P +
Sbjct: 76 DSTAVELVRLRSLEAKGVTVRTLSAQGESVDSAVAAVPPELLVPPTPHPSGPSS 129
Score = 34.0 bits (77), Expect = 0.052
Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 5/117 (4%)
Query: 342 EFTVPDIPASLKARPG-GPSSIIVSWTPPADQSIMV--RGFTLGWGKGVPDEFVKQILD- 397
P P + + G P++I VSW PP + G+G + V +++
Sbjct: 14 PAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAKGQRVAEVIFP 73
Query: 398 -VKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPPMG 453
+ E+ L +++R + G+ + P P P G
Sbjct: 74 TADSTAVELVRLRSLEAKGVTVRTLSAQGESVDSAVAAVPPELLVPPTPHPSGPSSG 130
Score = 34.0 bits (77), Expect = 0.054
Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 10/124 (8%)
Query: 435 RTRNEPPPQAPK-VLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTH 493
T PP P+ V + ++P ++R+SW L +G Y V +
Sbjct: 11 STLPAGPPAPPQDVTV------QAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGV---Y 61
Query: 494 LLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPAS 553
G + A+ T+V++ LR TV+ + A+ ES S + + P +
Sbjct: 62 AKGQRVAEVIFPTADSTAVELVRLRSLEAKGVTVRTLSAQGESVDSAVAAVPPELLVPPT 121
Query: 554 APRD 557
Sbjct: 122 PHPS 125
>1y6k_R Interleukin-10 receptor alpha chain; helix bundle, receptor
complex, immune system; 2.52A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1j7v_R* 1lqs_R 1y6m_R 1y6n_R
Length = 214
Score = 45.1 bits (106), Expect = 2e-05
Identities = 23/172 (13%), Positives = 48/172 (27%), Gaps = 20/172 (11%)
Query: 486 HYLVRYTHLLGASNPRYKYINANIT----SVQINDLRPSTQYEFTVKVVRAKKESEWSMI 541
Y V G + + + DL S Y V+ V + S+W++
Sbjct: 35 CYEVALL-RYGIESWNSISQCSQTLSYDLTAVTLDLYHSNGYRARVRAVDGSRHSQWTVT 93
Query: 542 VLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQIS---------GYTILYS 592
+ + + + L + PK A Q + Y I
Sbjct: 94 NTRFSVDEVTLTVGS--VNLEIHNGFILGKIQLPRPKMAPAQDTYESIFSHFREYEIAIR 151
Query: 593 SDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKAR--NSAGSSPYSSTV 642
P + + V ++ S + + ++K + + +S
Sbjct: 152 KVPGQFTFTHKKVKHEQFS--LLTSGEVGEFCVQVKPSVASRSNKGMWSKEE 201
Score = 42.0 bits (98), Expect = 2e-04
Identities = 28/188 (14%), Positives = 54/188 (28%), Gaps = 23/188 (12%)
Query: 75 LRWLPPTLPRGEILVYCVLYKREGSER-----ERAYNATARVEAIIQGLHPNTSYTFRVV 129
L W P E Y V R G E + + + + A+ L+ + Y RV
Sbjct: 22 LHWTPIPQQ-SESTCYEVALLRYGIESWNSISQCSQTLSYDLTAVTLDLYHSNGYRARVR 80
Query: 130 AYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGE------ 183
A + G+ + + D V +VN+ + +L + P
Sbjct: 81 AVD--GSRHSQWTVTNTRFSVDEVTLTVGSVNLEIHNG-FILGKIQLPRPKMAPAQDTYE 137
Query: 184 -----IKHYTLYYLEEDTSVER-HVVTPQLSYELTGLSHFTLY--SIWVVAHNGNGAGTT 235
+ Y + + H + L + + + + G
Sbjct: 138 SIFSHFREYEIAIRKVPGQFTFTHKKVKHEQFSLLTSGEVGEFCVQVKPSVASRSNKGMW 197
Query: 236 SQELSVQT 243
S+E +
Sbjct: 198 SKEECISL 205
Score = 34.3 bits (78), Expect = 0.097
Identities = 20/185 (10%), Positives = 47/185 (25%), Gaps = 15/185 (8%)
Query: 363 IVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQR----SDEITGLEPNSDYVISL 418
I+ WTP QS + + + + + + + L ++ Y +
Sbjct: 21 ILHWTPIPQQSESTC-YEVALLRYGIESWNSISQCSQTLSYDLTAVTLDLYHSNGYRARV 79
Query: 419 RAFNEMGD-GPQKYESLRTRNEPPPQAPKVLIPPMGLKSEV-LSPYSMRISWIDTTLPDQ 476
RA + + + +E V + + +++ T
Sbjct: 80 RAVDGSRHSQWTVTNTRFSVDEVTLTVGSVNLEIHNGFILGKIQLPRPKMAPAQDTYESI 139
Query: 477 FQQHGEEGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVV--RAKK 534
F R Y + + + + ++ VK
Sbjct: 140 FSHF----REYEIAIRK--VPGQFTFTHKKVKHEQFSLLTSGEVGEFCVQVKPSVASRSN 193
Query: 535 ESEWS 539
+ WS
Sbjct: 194 KGMWS 198
Score = 30.1 bits (67), Expect = 2.1
Identities = 14/100 (14%), Positives = 34/100 (34%), Gaps = 9/100 (9%)
Query: 554 APRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTN 613
+P + ++ L +W P + Y + + W S +S +
Sbjct: 7 SPPSVWFEAEFFHHIL---HWTPIPQQSESTC-YEVALLRYGI-ESWNSISQCSQTLSYD 61
Query: 614 V----RGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASD 649
+ L Y +++A + + S ++ T T + +
Sbjct: 62 LTAVTLDLYHSNGYRARVRAVDGSRHSQWTVTNTRFSVDE 101
>1wft_A 1700129L13RIK protein; FN3 domain, similar to HOST cell factor 2,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 123
Score = 42.2 bits (98), Expect = 7e-05
Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 18/118 (15%)
Query: 553 SAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESV------V 606
AP + + + ++L+W+PP S +G I Y+ + Q +
Sbjct: 9 GAPSTVRI---SKNVDGIHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQLVFMRIYC 65
Query: 607 GDKMSTNVRGLEPGRIYY---------FKIKARNSAGSSPYSSTVTWTTASDMQEAGG 655
G K S V + + F+I A+N G P + S + G
Sbjct: 66 GLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQIRWLQGNSKSGPSSG 123
Score = 33.3 bits (75), Expect = 0.075
Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 19/105 (18%)
Query: 55 TLPSAPQSVSAIMV--GPRSVALRWLPPTLPRGEILVYCVLY--KREGSERERAYNATAR 110
+ S P + S + + + L W PPT P G IL Y + + + R
Sbjct: 3 SGSSGPGAPSTVRISKNVDGIHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQLVFMR 62
Query: 111 V------EAIIQGLHPNTSYT---------FRVVAYNALGAGLAS 140
+ + ++ FR+ A N G G A+
Sbjct: 63 IYCGLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPAT 107
Score = 29.1 bits (64), Expect = 2.3
Identities = 22/116 (18%), Positives = 35/116 (30%), Gaps = 19/116 (16%)
Query: 154 PSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERH------------ 201
P P V I + ++WE PT +G I Y+ Y ++ +
Sbjct: 8 PGAPSTVRISKN-VDGIHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQLVFMRIYCG 66
Query: 202 ------VVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEP 251
V QL+ + + A N G G +Q +Q S
Sbjct: 67 LKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQIRWLQGNSKSGPSS 122
>3o71_B Peptide of deleted in colorectal cancer; protein-peptide complex,
kinase, DCC, transferase-protein BI complex; 1.95A
{Rattus norvegicus}
Length = 27
Score = 38.6 bits (89), Expect = 1e-04
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 677 KQQAPATQINPPDLWIHHDQMELKAIE 703
K++ + PPDLWIHH++ME+K IE
Sbjct: 1 KRKGSQKDLRPPDLWIHHEEMEMKNIE 27
>3og6_B Interleukin 28 receptor, alpha (interferon, lambd receptor);
helical bundle, fibronectin type III domain,
beta-sandwich, signaling, membrane; HET: BMA NAG; 2.10A
{Homo sapiens} PDB: 3og4_B*
Length = 226
Score = 43.1 bits (101), Expect = 1e-04
Identities = 28/179 (15%), Positives = 52/179 (29%), Gaps = 18/179 (10%)
Query: 149 PEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVV----- 203
P +PP NV + S L TW P + N + Y + Y T V
Sbjct: 1 PGRPRLAPPQNVTLLSQNFSVYL-TWL-PGLGNPQDVTYFVAYQSSPTRRRWREVEECAG 58
Query: 204 TPQLSYELTGLSHFTL---YSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPP-------A 253
T +L + L L + V + + + + L + PP
Sbjct: 59 TKELLCSMMCLKKQDLYNKFKGRVRTVSPSSKSPWVESEYLDYLFEVEPAPPVLVLTQTE 118
Query: 254 NSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTY 312
++ + Y++ + K+ K T + + + S +
Sbjct: 119 EILSANATYQLPPCMPPLDLKYEVAFWKEGAGN-KTLFPVTPHGQPVQITLQPAASEHH 176
Score = 36.6 bits (84), Expect = 0.017
Identities = 13/133 (9%), Positives = 38/133 (28%), Gaps = 4/133 (3%)
Query: 508 NITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDP 567
++ ++ D +++ V+ V +S W + P V+++ +
Sbjct: 65 SMMCLKKQD--LYNKFKGRVRTVSPSSKSPWVESEYLDYLFEVEPAPPV--LVLTQTEEI 120
Query: 568 SLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKI 627
N +Q P Y + + + ++ + + +
Sbjct: 121 LSANATYQLPPCMPPLDLKYEVAFWKEGAGNKTLFPVTPHGQPVQITLQPAASEHHCLSA 180
Query: 628 KARNSAGSSPYSS 640
+ + YS
Sbjct: 181 RTIYTFSVPKYSK 193
Score = 36.2 bits (83), Expect = 0.025
Identities = 24/188 (12%), Positives = 50/188 (26%), Gaps = 14/188 (7%)
Query: 75 LRWLPPTLPRGEILVYCVLYKREGSERE-RAYNATARVEAI------IQGLHPNTSYTFR 127
L WLP + + Y V Y+ + R R A + + ++ + R
Sbjct: 23 LTWLPGLGN-PQDVTYFVAYQSSPTRRRWREVEECAGTKELLCSMMCLKKQDLYNKFKGR 81
Query: 128 VVAYNALGAGLASSALPVKTEPEDHV-PSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKH 186
V + + + + V P+PP+ V S T++ P
Sbjct: 82 VRTVSPSSKSPWVESEYL--DYLFEVEPAPPVLVLTQTEEILSANATYQLPPCMPPLDLK 139
Query: 187 YTLYYLEEDTSVERHVVTPQLSYELTGLSHF---TLYSIWVVAHNGNGAGTTSQELSVQT 243
Y + + +E + + + + S+
Sbjct: 140 YEVAFWKEGAGNKTLFPVTPHGQPVQITLQPAASEHHCLSARTIYTFSVPKYSKFSKPTC 199
Query: 244 LSDKPSEP 251
+ E
Sbjct: 200 FLLEVPEA 207
Score = 34.7 bits (79), Expect = 0.083
Identities = 16/103 (15%), Positives = 38/103 (36%), Gaps = 9/103 (8%)
Query: 554 APRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMS-- 611
P+++T++S+ L W P N Q Y + Y S P +W E
Sbjct: 8 PPQNVTLLSQNFSVYL---TWLPGLG-NPQDVTYFVAYQSSPTRRRWREVEECAGTKELL 63
Query: 612 ---TNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASDMQ 651
++ + + +++ + + SP+ + +++
Sbjct: 64 CSMMCLKKQDLYNKFKGRVRTVSPSSKSPWVESEYLDYLFEVE 106
Score = 29.7 bits (66), Expect = 2.7
Identities = 13/83 (15%), Positives = 24/83 (28%), Gaps = 2/83 (2%)
Query: 55 TLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAI 114
P+ P V S + P L Y V + +EG+ + + T + +
Sbjct: 105 VEPAPPVLVLTQTEEILSANATYQLPPCMPPLDLKYEVAFWKEGAGNKTLFPVTPHGQPV 164
Query: 115 IQGLHP--NTSYTFRVVAYNALG 135
L P + +
Sbjct: 165 QITLQPAASEHHCLSARTIYTFS 187
>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III
module, structural protein; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 98
Score = 39.8 bits (92), Expect = 3e-04
Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Query: 552 ASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMS 611
+S P ++ + P+ + W P+ + IS Y + + + +W E ++ G S
Sbjct: 5 SSGPVEVFITETPSQPNSHPIQWNAPQPS--HISKYILRWRPKNSVGRWKEATIPGHLNS 62
Query: 612 TNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTAS 648
++GL+PG +Y ++ + G + +TT S
Sbjct: 63 YTIKGLKPGVVYEGQLISIQQYGHQE-VTRFDFTTTS 98
Score = 37.9 bits (87), Expect = 0.001
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 243 TLSDKPSEPPANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYV 302
+++ PS+P NS ++W P Q I+ Y LR++ K+ + + T G Y
Sbjct: 12 FITETPSQP--NSHPIQWNAP----QPSHISKYILRWRPKN-SVGRWKEATIPGHLNSYT 64
Query: 303 ITGLNKSTTYQIKLWAMNVNGSGPAT 328
I GL Y+ +L ++ G T
Sbjct: 65 IKGLKPGVVYEGQLISIQQYGHQEVT 90
Score = 30.5 bits (68), Expect = 0.47
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 356 PGGPSSIIVSWTPPADQSIMVRGFTLGWG-KGVPDEFVKQILDVKQRSDEITGLEPNSDY 414
P P+S + W P Q + + L W K + + + S I GL+P Y
Sbjct: 17 PSQPNSHPIQWNAP--QPSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVY 74
Query: 415 VISLRAFNEMG 425
L + + G
Sbjct: 75 EGQLISIQQYG 85
Score = 28.2 bits (62), Expect = 2.9
Identities = 12/66 (18%), Positives = 23/66 (34%)
Query: 481 GEEGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSM 540
Y++R+ + I ++ S I L+P YE + ++ E +
Sbjct: 32 PSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTR 91
Query: 541 IVLNTT 546
TT
Sbjct: 92 FDFTTT 97
>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome,
unknown function; 1.72A {Clostridium thermocellum} PDB:
3pdg_A
Length = 190
Score = 40.0 bits (93), Expect = 0.001
Identities = 22/138 (15%), Positives = 46/138 (33%), Gaps = 9/138 (6%)
Query: 120 PNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLN--VNIPVVGTSSLLVTWEKP 177
+Y + VA + G + S PV + N+ G L +T
Sbjct: 59 AVGAYNLKAVAVLSDGRRIESPVTPVLVKVIVKPTVKLTAPKSNVVAYGNEFLKITAT-A 117
Query: 178 TVTNGEIKHYTLYYLEEDTSVERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQ 237
+ ++G+I + + P YE + + I V+A++ + A +T
Sbjct: 118 SDSDGKISRVDFLV--DGEVIGSDREAP---YEYEWKAVEGNHEISVIAYDDDDAASTPD 172
Query: 238 ELSVQTLSDKPSEPPANS 255
+ + + E +
Sbjct: 173 SVKI-FVKQARLEHHHHH 189
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 36.0 bits (82), Expect = 0.039
Identities = 16/149 (10%), Positives = 41/149 (27%), Gaps = 11/149 (7%)
Query: 114 IIQGLHPNTSYTFRVVAYNALGAGLASSALP-VKTEPEDHVPSPPLNVNIPVVGTSSLLV 172
+ + +++V + S + ++ + P + + L
Sbjct: 55 TVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHA 114
Query: 173 TWEK---PTVTNGEIKHYTLYYLEEDTSVERHVVTPQLSYELTGLSHFTLYSIWVVAHNG 229
T + T + HY+ E+ T ++ + +Y+ V
Sbjct: 115 TVKFSGGKTPADNYELHYSWSKGEDVIDT-----TQDITIQEFTADKNGVYT--VKVWGE 167
Query: 230 NGAGTTSQELSVQTLSDKPSEPPANSITV 258
+ S + + + S TV
Sbjct: 168 SEDSAASASTKIMLATMNVDQDVVESKTV 196
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 35.3 bits (80), Expect = 0.043
Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 4/137 (2%)
Query: 508 NITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKE-GD 566
NI Q L + Q + +VR I + ++ T +
Sbjct: 57 NIEHGQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAAT 116
Query: 567 PSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFK 626
P+ + ++W +S Y I Y E +V + + GL+PG Y
Sbjct: 117 PTSLLISWDASY---YGVSYYRITYGETGGNSPVQEFTVPYSSSTATISGLKPGVDYTIT 173
Query: 627 IKARNSAGSSPYSSTVT 643
+ A + S + S ++
Sbjct: 174 VYAYSDYYGSHHYSPIS 190
Score = 31.1 bits (69), Expect = 1.0
Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 9/111 (8%)
Query: 427 GPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRH 486
G + +R R E + V P L+ +P S+ ISW + +
Sbjct: 83 GNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPTSLLISWDASYYGV---------SY 133
Query: 487 YLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESE 537
Y + Y G S + + + ++ I+ L+P Y TV S
Sbjct: 134 YRITYGETGGNSPVQEFTVPYSSSTATISGLKPGVDYTITVYAYSDYYGSH 184
Score = 30.3 bits (67), Expect = 1.7
Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 7/134 (5%)
Query: 112 EAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTS-SL 170
+ L + ++ + V+ + S V T SL
Sbjct: 61 GQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPTSL 120
Query: 171 LVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVT---PQLSYELTGLSHFTLYSIWVVAH 227
L++W+ + +Y + Y E + T + ++GL Y+I V A+
Sbjct: 121 LISWDASY---YGVSYYRITYGETGGNSPVQEFTVPYSSSTATISGLKPGVDYTITVYAY 177
Query: 228 NGNGAGTTSQELSV 241
+ +S+
Sbjct: 178 SDYYGSHHYSPISI 191
Score = 29.9 bits (66), Expect = 2.4
Identities = 29/185 (15%), Positives = 57/185 (30%), Gaps = 14/185 (7%)
Query: 245 SDKPSEPPANSITVRWQPPSRRGQNGIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVIT 304
P P + I V P G + L+ K ++ + + + + ++
Sbjct: 15 RGNPFRPDDDGIFVTRVQP-----EGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLK 68
Query: 305 GLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIV 364
+ I N V +P +L+ P+S+++
Sbjct: 69 TFQNTVELIIVREVGNGAKQEIRVRVEKDGGS------GGVSSVPTNLEVVAATPTSLLI 122
Query: 365 SWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEM 424
SW R T G G + + I+GL+P DY I++ A+++
Sbjct: 123 SWDASYYGVSYYR-ITYGETGGNSPVQEFTVPY-SSSTATISGLKPGVDYTITVYAYSDY 180
Query: 425 GDGPQ 429
Sbjct: 181 YGSHH 185
Score = 28.0 bits (61), Expect = 9.4
Identities = 20/121 (16%), Positives = 35/121 (28%), Gaps = 1/121 (0%)
Query: 23 PPNQYHLTSTTSMTASPLDTSTGSIEAINETLTLPSAPQSVSAIMVGPRSVALRWLPPTL 82
N L + +E + + S P ++ + P S+ + W
Sbjct: 70 FQNTVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPTSLLISWDASYY 129
Query: 83 PRGEILVYCVLYKREGSERERAYNATARVEAIIQGLHPNTSYTFRVVAYNALGAGLASSA 142
+ +E ++ A I GL P YT V AY+ S
Sbjct: 130 GVSYYRITYGETGGNSPVQEFTVPYSSS-TATISGLKPGVDYTITVYAYSDYYGSHHYSP 188
Query: 143 L 143
+
Sbjct: 189 I 189
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 33.9 bits (77), Expect = 0.22
Identities = 19/143 (13%), Positives = 36/143 (25%), Gaps = 18/143 (12%)
Query: 124 YTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIP--VVGTSSLLVTWEKPTVTN 181
YTF + N+ + + V T+PE +N + G + W T
Sbjct: 390 YTF--LVSNSDVNAAIAFNVYVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTE 447
Query: 182 GEIKHYTL---YYLEEDTSVERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQE 238
L + + Q S + + H A+N G +
Sbjct: 448 QRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVEC--KAYNDVGKTSAYFN 505
Query: 239 LSVQTLSDKPSEPPANSITVRWQ 261
+ + +
Sbjct: 506 FAFK-------GNN--KEQIHPH 519
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta-
propeller; HET: LBT CIT; 1.70A {Micromonospora
viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB:
1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A
1eus_A*
Length = 601
Score = 33.6 bits (75), Expect = 0.25
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 579 SANGQISGYTILYSSDPNTDQWIEESVVG---DKMSTNVRGLEPGRIYYFKIKARNSAGS 635
SAN Q++ Y I S + T W G ++ Y ++ A +
Sbjct: 529 SANEQVADYEIYTSLNGTT--WDGPVASGRFTTSLAPQRAVFPARDARYIRLVALSEQTG 586
Query: 636 SPYSS 640
Y++
Sbjct: 587 HKYAA 591
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase,
periplasm, beta-helix, glycosidase, EXO-activity; HET:
AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A*
Length = 608
Score = 33.4 bits (76), Expect = 0.29
Identities = 24/168 (14%), Positives = 49/168 (29%), Gaps = 35/168 (20%)
Query: 116 QGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWE 175
Q P T+ ++A +G +A +A + + P L + SS+++ W+
Sbjct: 4 QLQRPRTTGMLVIMASLMVGTPMAMAAKSSSLDAPQQLQVPTLAYD-----ESSIVLVWK 58
Query: 176 KPTVTNGEIKHYTLY------------------------YLEEDTSVERHVVTPQLSYEL 211
P +I Y ++ + + ++ +
Sbjct: 59 APE-DTRKIVDYQIFSAGKLLGKASDNNDNFSPAKPYIDHFYVNDKDNFQHKIVMQNFTV 117
Query: 212 TGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPANSITVR 259
GL T Y V A +G+ + + VR
Sbjct: 118 IGLKPETSYQFTVKAQYADGS-----LSVASKPITAKTSAKPQIVNVR 160
Score = 30.4 bits (68), Expect = 3.0
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 491 YTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAA 550
Y ++ + + + L+P T Y+FTVK ++ S+ V + A
Sbjct: 94 YIDHFYVNDKDNFQHKIVMQNFTVIGLKPETSYQFTVKAQ----YADGSLSVASKPITAK 149
Query: 551 PASAPRDLTVVS 562
++ P+ + V
Sbjct: 150 TSAKPQIVNVRD 161
Score = 28.8 bits (64), Expect = 7.6
Identities = 30/153 (19%), Positives = 52/153 (33%), Gaps = 24/153 (15%)
Query: 24 PNQYHLTSTTSMTASPLDTSTGSIEAINETLTLPSAPQSVSAIMVGPRSVALRWLPPT-- 81
+ T + AS + + ++ A + +L P Q V + S+ L W P
Sbjct: 5 LQRPRTTGMLVIMASLMVGTPMAMAAKSSSLDAPQQLQ-VPTLAYDESSIVLVWKAPEDT 63
Query: 82 --LPRGEILVYCVLYKREGSERERAYNATARVEAI------------------IQGLHPN 121
+ +I L + + A ++ + GL P
Sbjct: 64 RKIVDYQIFSAGKLLGKASDNNDNFSPAKPYIDHFYVNDKDNFQHKIVMQNFTVIGLKPE 123
Query: 122 TSYTFRVVAYNALGA-GLASSALPVKTEPEDHV 153
TSY F V A A G+ +AS + KT + +
Sbjct: 124 TSYQFTVKAQYADGSLSVASKPITAKTSAKPQI 156
>3f2z_A Uncharacterized protein BF3579; the present C-terminal domain is
predominantly composed of B strands., structural
genomics, PSI-2; 1.30A {Bacteroides fragilis} PDB:
2kd7_A
Length = 159
Score = 31.0 bits (70), Expect = 0.69
Identities = 8/67 (11%), Positives = 22/67 (32%)
Query: 574 WQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSA 633
+ +N I S D + I + ++ + ++ Y K+ +
Sbjct: 73 LPRGRGSNNPIKVVRFEASEDGTNWESIGQFGFTNQDAALKYYVKSSTARYIKLVIPDGV 132
Query: 634 GSSPYSS 640
G+ ++
Sbjct: 133 GNGTVAA 139
>3ggl_A Putative chitobiase; X-RAY, structure genomics, NESG, BTR324A,
Q8A9F0_bactn, BT_0865, PSI-2, protein structure
initiative; 3.00A {Bacteroides thetaiotaomicron}
Length = 169
Score = 31.0 bits (70), Expect = 0.72
Identities = 8/67 (11%), Positives = 22/67 (32%)
Query: 574 WQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSA 633
+ +N I S D I ++ + ++ + Y ++ +
Sbjct: 83 LPRGRGSNNPIKVVEFAASEDNVNWTPIGRFGFTNQDAALEYYVKSIKARYIRLTIPDDG 142
Query: 634 GSSPYSS 640
G+S ++
Sbjct: 143 GNSTVAA 149
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 31.2 bits (71), Expect = 0.81
Identities = 23/144 (15%), Positives = 45/144 (31%), Gaps = 29/144 (20%)
Query: 114 IIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNIPVVGTSSLL-- 171
+ + +A N +G SS L ++ P+ H P VG++ L
Sbjct: 66 TVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHV 125
Query: 172 ---------VTWEKPTVTNGEI----KHYTLYYLEEDTSVERHVVTPQLSYELTGLSHFT 218
+TW ++ ++ T+ E T + V + +H
Sbjct: 126 MYIGRPVPAMTWFH----GQKLLQNSENITIENTEHYTHLVMKNVQRK--------THAG 173
Query: 219 LYSIWVVAHNGNGAGTTSQELSVQ 242
Y + N G ++ +Q
Sbjct: 174 KYKV--QLSNVFGTVDAILDVEIQ 195
>2j1a_A Hyaluronidase, CBM32; protein-carbohydrate interaction, glycoside
hydrolase, GH84C, hydrolase; HET: GAL; 1.49A
{Clostridium perfringens} PDB: 2j1e_A* 2j7m_A*
Length = 150
Score = 30.6 bits (69), Expect = 0.85
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 1/78 (1%)
Query: 574 WQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSA 633
S NG+I+GY + S D ++ + D + + Y ++ +S
Sbjct: 71 APRQDSKNGRITGYKVSVSLDGENFTEVKTGTLEDNAAIKFIEFDSVDAKYVRLDVTDSV 130
Query: 634 GSSPYSSTVTWTTASDMQ 651
+ TA+++
Sbjct: 131 SDQANGRG-KFATAAEVN 147
>3eol_A Isocitrate lyase; seattle structural center for infectious disease,
ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A
3p0x_A*
Length = 433
Score = 31.8 bits (71), Expect = 0.86
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 497 ASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKK 534
A R+ I T+ + LR S + ++++ + A +
Sbjct: 15 APKGRFDGIERAHTAEDVKRLRGSVEIKYSLAEMGANR 52
>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A
{Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1
Length = 426
Score = 31.2 bits (70), Expect = 1.3
Identities = 27/127 (21%), Positives = 41/127 (32%), Gaps = 23/127 (18%)
Query: 57 PSAPQSVSAIMVG--PRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARV--- 111
+APQ V R V + W T P + V Y E S+ ++ T
Sbjct: 22 YNAPQQVHITQGDYEGRGVIISW---TTPYDKAGANKVFYWSENSKSQKRAMGTVVTYKY 78
Query: 112 ---------EAIIQGLHPNTSYTFRVVAYNALGAGLASSALPVKTEPEDHVPSPPLNVNI 162
I+ L +T Y +R+ G G A T P+ P + I
Sbjct: 79 YNYTSAFIHHCTIKDLEYDTKYYYRL------GFGDAKRQFWFVTPPKPGPDVPYVFGLI 132
Query: 163 PVVGTSS 169
+G +
Sbjct: 133 GDIGQTH 139
Score = 30.1 bits (67), Expect = 3.4
Identities = 14/124 (11%), Positives = 25/124 (20%), Gaps = 26/124 (20%)
Query: 574 WQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSA 633
W + + G + Y T +I + + LE YY+++
Sbjct: 59 WSENSKSQKRAMGTVVTYKYYNYTSAFIHHCTI--------KDLEYDTKYYYRL------ 104
Query: 634 GSSPYSSTVTWTTASDMQEAGGIPNSNQVSNTMILYVKGNTGGKQQAPATQI----NPPD 689
G + T V L T
Sbjct: 105 GFGDAKRQFWFVTPP--------KPGPDVPYVFGLIGDIGQTHDSNTTLTHYEQNSAKGQ 156
Query: 690 LWIH 693
+
Sbjct: 157 AVLF 160
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 31.3 bits (70), Expect = 1.4
Identities = 16/150 (10%), Positives = 34/150 (22%), Gaps = 25/150 (16%)
Query: 114 IIQGLHPNTSYTFRVVAYNALGAGLASSAL----PVKTEPEDHVPSPPLNVNI------- 162
++ + +A + + P +I
Sbjct: 628 ELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVS 687
Query: 163 -PVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTPQLSYELTGLSHFTLYS 221
G + W K + E L ED+ + L+ LY+
Sbjct: 688 CTASGNPPPQIMWFK----DNET-------LVEDSGIVLKDGNRNLTIRRVRKEDEGLYT 736
Query: 222 IWVVAHNGNGAGTTSQELSVQTLSDKPSEP 251
A + G ++ +K +
Sbjct: 737 --CQACSVLGCAKVEAFFIIEGAQEKTNLE 764
>2hft_A Human tissue factor; coagulation factor; 1.69A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1jps_T 1ahw_C 1boy_A 1tfh_A 1wtg_T*
1wss_T* 1wqv_T* 1wun_T* 1wv7_T* 2zp0_T* 2zwl_T* 2zzu_T*
1z6j_T* 2aei_T* 2flb_T* 2b7d_T* 2f9b_T* 1o5d_T* 2flr_T*
1w0y_T* ...
Length = 218
Score = 30.5 bits (68), Expect = 1.6
Identities = 21/119 (17%), Positives = 37/119 (31%), Gaps = 19/119 (15%)
Query: 30 TSTTSMTASPLDTSTGSIEAINETLTLPSAPQSVSAIMVGPRSVALRWLPPTLPR----- 84
+T PL ++ ET P S VG + TL R
Sbjct: 83 VESTGSAGEPLYENSPEFTPYLETNLGQ--PTIQSFEQVGTKVNVTVEDERTLVRRNNTF 140
Query: 85 -------GEILVYCVLYKREGSERERAYNATARVE-----AIIQGLHPNTSYTFRVVAY 131
G+ L+Y + Y + S+ + + + + + + +Y F V A
Sbjct: 141 LSLRDVFGKDLIYTLYYWKSSSQEKGEFRSGKKTAKTNTNEFLIDVDKGENYCFSVQAV 199
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 2.3
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 9/34 (26%)
Query: 695 DQMELKAIEKSSQGSL-----DLAPTTQLQGEYE 723
++ LK ++ SL D AP ++ E
Sbjct: 18 EKQALKKLQ----ASLKLYADDSAPALAIKATME 47
Score = 29.5 bits (65), Expect = 2.5
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 26/48 (54%)
Query: 280 KKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPA 327
+K+ +KK L S +KL+A + S PA
Sbjct: 18 EKQALKK-------------------LQAS----LKLYA---DDSAPA 39
Score = 27.6 bits (60), Expect = 9.4
Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 6/26 (23%)
Query: 661 QVSNTMILYVKGNTGGKQQAPATQIN 686
++ ++ LY + APA I
Sbjct: 24 KLQASLKLYADDS------APALAIK 43
>2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module,
glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil;
3.30A {Clostridium perfringens}
Length = 737
Score = 30.4 bits (67), Expect = 2.6
Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 579 SANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPY 638
S NG+I+GY + S D ++ + D + + Y ++ +S
Sbjct: 663 SKNGRITGYKVSVSLDGENFTEVKTGTLEDNAAIKFIEFDSVDAKYVRLDVTDSVSDQAN 722
Query: 639 SSTVTWTTASDMQ 651
+ TA+++
Sbjct: 723 GRG-KFATAAEVN 734
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane,
transport protein; HET: NAG BMA MAN; 2.50A {Rattus
norvegicus}
Length = 384
Score = 30.1 bits (67), Expect = 3.1
Identities = 9/68 (13%), Positives = 22/68 (32%)
Query: 483 EGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIV 542
G HY++ + ++K AN+T Q+ + + + + +
Sbjct: 210 IGYHYILANLGFMDIDLNKFKESGANVTGFQLVNYTDTIPARIMQQWRTSDSRDHTRVDW 269
Query: 543 LNTTQEAA 550
+A
Sbjct: 270 KRPKYTSA 277
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear,
recombination-recombination complex, DN protein-protein
binding complex; HET: DNA; 5.50A {Homo sapiens}
Length = 186
Score = 29.3 bits (65), Expect = 3.7
Identities = 10/46 (21%), Positives = 18/46 (39%)
Query: 93 LYKREGSERERAYNATARVEAIIQGLHPNTSYTFRVVAYNALGAGL 138
LYK+ G E ++ I P+ ++ +V L +G
Sbjct: 16 LYKKAGFENLYFQGMERKISRIHLVSEPSITHFLQVSWEKTLESGF 61
>1q38_A Fibronectin; amyloid fibril, anastellin, extracellular matrix,
dynamic fluctuations, conformational exchange, chaps,
cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 89
Score = 27.4 bits (60), Expect = 5.3
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 272 ITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPAT 328
I+ Y LR++ K+ + + T G Y I GL Y+ +L ++ G T
Sbjct: 12 ISKYILRWRPKN-SVGRWKEATIPGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVT 67
Score = 26.6 bits (58), Expect = 8.7
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 576 PPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIY 623
P+ ++ IS Y + + + +W E ++ G S ++GL+PG +Y
Sbjct: 6 APQPSH--ISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVY 51
>2zxq_A Endo-alpha-N-acetylgalactosaminidase; broken TIM barrel, glycosidase,
hydrolase; 2.00A {Bifidobacterium longum}
Length = 1376
Score = 29.6 bits (65), Expect = 5.4
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 3/82 (3%)
Query: 572 LNWQPPKSANGQISGYTILYSSD--PNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKA 629
L +ANG+I GY I + D + M + ++
Sbjct: 1290 LPRSGGMNANGKIKGYKITLTLADGTTKDVVTDAEFSTTTMWQKASFDAVENVTAVRLTV 1349
Query: 630 RNSAGSSPYSSTVTWTTASDMQ 651
+SAG S + + +A++++
Sbjct: 1350 LSSAGQSDSQANK-FASAAELR 1370
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed
parallel beta helix fold; 1.45A {Erwinia chrysanthemi}
PDB: 3b8y_A* 3b90_A
Length = 344
Score = 29.1 bits (64), Expect = 5.8
Identities = 13/84 (15%), Positives = 22/84 (26%)
Query: 481 GEEGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSM 540
+ R + R T R ++A + + D Y + V VV + S
Sbjct: 42 SKVARQEVYRGTTSNPDLRERIAVLDAETRTFKDADTNSGLNYWYWVDVVSENQAQVVSN 101
Query: 541 IVLNTTQEAAPASAPRDLTVVSKE 564
V +A
Sbjct: 102 AVTTAPNAGPLRAAKASSECKPGA 125
>1dqu_A Isocitrate lyase; beta barrel; 2.80A {Emericella nidulans} SCOP:
c.1.12.7
Length = 538
Score = 29.1 bits (64), Expect = 6.1
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 497 ASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAK 533
+ R++Y T+ QI R + + E+ V K
Sbjct: 22 WKDSRWRYTKRPFTAEQIVAKRGNLKIEYPSNVQAKK 58
>2j42_A C2-II, C2 toxin component-II; 3.13A {Clostridium botulinum}
Length = 721
Score = 28.8 bits (63), Expect = 8.0
Identities = 23/175 (13%), Positives = 49/175 (28%), Gaps = 17/175 (9%)
Query: 575 QPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVR-GLEPGRIYYFKIKARNSA 633
+P + Y L ++ PN + + ++T+ L G +Y +I+ S
Sbjct: 72 KPSITGE-----YI-LSTNSPNCRVELNGEIFNLSLNTSNTVNLIQGNVYDIRIEQLMSE 125
Query: 634 G-SSPYSSTVTWTTASDMQEAGGIPNSN-------QVSNTMILYVKGNTGGKQQAPATQI 685
+ + IP+ + + A
Sbjct: 126 NQLLKNYEGIKLYWETSDIIKEIIPSEVLLKPNYSNTNEKSKFIPNNTLFSNAKLKANAN 185
Query: 686 NPPDLWIHHDQMELKAIEKSSQGSLDLAPTTQLQG--EYEPPPKSQHNASTPSSN 738
D D+ E+ +Q ++ G +Y P A+ P ++
Sbjct: 186 RDTDRDGIPDEWEINGYTVMNQKAVAWDDKFAANGYKKYVSNPFKPCTANDPYTD 240
>2ope_A PILX; type IV pilin, minor pilin, bacterial pathogenesis, adhesion,
aggregation, filament, cell adhesion; 2.40A {Neisseria
meningitidis} PDB: 2opd_A
Length = 128
Score = 27.5 bits (60), Expect = 8.7
Identities = 14/75 (18%), Positives = 24/75 (32%)
Query: 270 GIITGYKLRYKKKDVKKDKGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATD 329
++GYK+ K + V R ++ T Y + +W +V D
Sbjct: 44 RFVSGYKMNPKIAEKYNVSVHFVNKEKPRAYSLVGVPKTGTGYTLSVWMNSVGDGYKCRD 103
Query: 330 WFSAETFSQDLGEFT 344
SA + L
Sbjct: 104 AASARAHLETLSSDV 118
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell
shape regulation; 2.5A {Listeria monocytogenes}
Length = 255
Score = 28.2 bits (63), Expect = 9.1
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
Query: 252 PANSITVRWQPPSRRGQNGIITGY-------KLRYKKKDVKKDKGETVTTAG 296
N ++ + Q + GII GY +L+ D+K KG+ V T+G
Sbjct: 131 VKNRVSAKVQ--GKENAFGIINGYDSDTKLLELKQLPYDMKFKKGQKVVTSG 180
>2v72_A CBM32, EXO-alpha-sialidase; galactose, bacterial pathogen,
carbohydrate-binding module, sugar-binding protein; HET:
GAL; 2.25A {Clostridium perfringens}
Length = 143
Score = 27.5 bits (61), Expect = 9.2
Identities = 12/56 (21%), Positives = 18/56 (32%)
Query: 579 SANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAG 634
NG I+ Y I ++ E + + + V P KI A G
Sbjct: 76 GNNGFITKYEIHAINNGVETLVAEGTWEENNLVKTVTFDSPIDAEEIKITAIQGVG 131
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.128 0.378
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,261,314
Number of extensions: 670516
Number of successful extensions: 3328
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1854
Number of HSP's successfully gapped: 836
Length of query: 753
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 652
Effective length of database: 3,881,772
Effective search space: 2530915344
Effective search space used: 2530915344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (27.8 bits)