BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2410
(198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NCE|A Chain A, Crystal Structure Of A Ternary Complex Of E. Coli
Thymidylate Synthase D169c With Dump And The Antifolate
Cb3717
pdb|1NCE|B Chain B, Crystal Structure Of A Ternary Complex Of E. Coli
Thymidylate Synthase D169c With Dump And The Antifolate
Cb3717
Length = 264
Score = 121 bits (303), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 55/96 (57%), Positives = 68/96 (70%)
Query: 103 CETIRLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLP 162
C + LPFNIASY+LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP
Sbjct: 169 CVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLP 228
Query: 163 NLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
L I KP+S DY FEDF+I Y+P I AP+AI
Sbjct: 229 KLIIKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1EVF|A Chain A, Crystal Structure Analysis Of Cys167 Mutant Of Escherichia
Coli
Length = 264
Score = 121 bits (303), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 66/91 (72%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
LPFNIASY+LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I
Sbjct: 174 LPFNIASYALLVHMMAQQXDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIK 233
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
KP+S DY FEDF+I Y+P I AP+AI
Sbjct: 234 RKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1EV5|A Chain A, Crystal Structure Analysis Of Ala167 Mutant Of Escherichia
Coli
Length = 264
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 66/91 (72%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
LPFNIASY+LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I
Sbjct: 174 LPFNIASYALLVHMMAQQXDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIK 233
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
KP+S DY FEDF+I Y+P I AP+AI
Sbjct: 234 RKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1EV8|A Chain A, Crystal Structure Analysis Of Cys167 Mutant Of Escherichia
Coli
Length = 264
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 66/91 (72%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
LPFNIASY+LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I
Sbjct: 174 LPFNIASYALLVHMMAQQXDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIK 233
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
KP+S DY FEDF+I Y+P I AP+AI
Sbjct: 234 RKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1EVG|A Chain A, Crystal Structure Analysis Of Cys167 Mutant Of Escherichia
Coli With Unmodified Catalytic Cysteine
Length = 264
Score = 120 bits (301), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 66/91 (72%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
LPFNIASY+LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I
Sbjct: 174 LPFNIASYALLVHMMAQQXDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIK 233
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
KP+S DY FEDF+I Y+P I AP+AI
Sbjct: 234 RKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|3BGX|A Chain A, E. Coli Thymidylate Synthase C146s Mutant Complexed With
Dtmp And Mtf
pdb|1TYS|A Chain A, Water-Mediated Substrate(Slash)product Discrimination: The
Product Complex Of Thymidylate Synthase At 1.83
Angstroms
Length = 264
Score = 120 bits (300), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 66/91 (72%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
LPFNIASY+LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I
Sbjct: 174 LPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIK 233
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
KP+S DY FEDF+I Y+P I AP+AI
Sbjct: 234 RKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1F4D|A Chain A, Crystal Structure Of E. Coli Thymidylate Synthase C146s,
L143c Covalently Modified At C143 With
N-[tosyl-D-Prolinyl]amino- Ethanethiol
pdb|1F4D|B Chain B, Crystal Structure Of E. Coli Thymidylate Synthase C146s,
L143c Covalently Modified At C143 With
N-[tosyl-D-Prolinyl]amino- Ethanethiol
Length = 264
Score = 120 bits (300), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 66/91 (72%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
LPFNIASY+LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I
Sbjct: 174 LPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIK 233
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
KP+S DY FEDF+I Y+P I AP+AI
Sbjct: 234 RKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|2VET|A Chain A, Crystal Structure Of The Thymidylate Synthase K48q
Complexed With Dump
pdb|3B5B|A Chain A, Crystal Structure Of The Thymidylate Synthase K48q
pdb|3B5B|B Chain B, Crystal Structure Of The Thymidylate Synthase K48q
Length = 264
Score = 120 bits (300), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 66/91 (72%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
LPFNIASY+LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I
Sbjct: 174 LPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIK 233
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
KP+S DY FEDF+I Y+P I AP+AI
Sbjct: 234 RKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1TLC|A Chain A, Thymidylate Synthase Complexed With Dgmp And Folate Analog
1843u89
pdb|1TLC|B Chain B, Thymidylate Synthase Complexed With Dgmp And Folate Analog
1843u89
pdb|1TSD|A Chain A, Thymidylate Synthase Complex With 2'-deoxyuridine 5'-
Monophosphate (dump) And Folate Analog 1843u89
pdb|1TSD|B Chain B, Thymidylate Synthase Complex With 2'-deoxyuridine 5'-
Monophosphate (dump) And Folate Analog 1843u89
pdb|1DDU|A Chain A, E. Coli Thymidylate Synthase In Complex With Cb3717 And
2', 5'-Dideoxyuridine (Ddurd)
pdb|1DDU|B Chain B, E. Coli Thymidylate Synthase In Complex With Cb3717 And
2', 5'-Dideoxyuridine (Ddurd)
pdb|1TDU|A Chain A, E. Coli Thymidylate Synthase In Complex With Cb3717 And
2'- Deoxyuridine (durd)
pdb|1TDU|B Chain B, E. Coli Thymidylate Synthase In Complex With Cb3717 And
2'- Deoxyuridine (durd)
pdb|1AN5|A Chain A, E. Coli Thymidylate Synthase In Complex With Cb3717
pdb|1AN5|B Chain B, E. Coli Thymidylate Synthase In Complex With Cb3717
pdb|1AXW|A Chain A, E. Coli Thymidylate Synthase In Complex With Methotrexate
(Mtx) And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1AXW|B Chain B, E. Coli Thymidylate Synthase In Complex With Methotrexate
(Mtx) And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1BDU|A Chain A, E. Coli Thymidylate Synthase Complexed With Durd
pdb|1BID|A Chain A, E. Coli Thymidylate Synthase Complexed With Dump
pdb|1TJS|A Chain A, E. Coli Thymidylate Synthase
pdb|1TRG|A Chain A, E. Coli Thymidylate Synthase In Symmetric Complex With
Cb3717 And 2'- Deoxyuridine 5'-Monophosphate (Dump)
pdb|1SYN|A Chain A, E. Coli Thymidylate Synthase In Complex With Bw1843u89 And
2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1SYN|B Chain B, E. Coli Thymidylate Synthase In Complex With Bw1843u89 And
2'-Deoxyuridine 5'-Monophosphate (Dump)
Length = 265
Score = 120 bits (300), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 66/91 (72%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
LPFNIASY+LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I
Sbjct: 175 LPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIK 234
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
KP+S DY FEDF+I Y+P I AP+AI
Sbjct: 235 RKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 265
>pdb|2BBQ|A Chain A, Structural Basis For Recognition Of Polyglutamyl Folates
By Thymidylate Synthase
pdb|2BBQ|B Chain B, Structural Basis For Recognition Of Polyglutamyl Folates
By Thymidylate Synthase
pdb|2KCE|A Chain A, Binding Of The Anticancer Drug Zd1694 To E. Coli
Thymidylate Synthase: Assessing Specificity And Affinity
pdb|2KCE|B Chain B, Binding Of The Anticancer Drug Zd1694 To E. Coli
Thymidylate Synthase: Assessing Specificity And Affinity
pdb|3TMS|A Chain A, Plastic Adaptation Toward Mutations In Proteins:
Structural Comparison Of Thymidylate Synthases
pdb|1AOB|A Chain A, E. Coli Thymidylate Synthase Complexed With Ddurd
Length = 264
Score = 120 bits (300), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 66/91 (72%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
LPFNIASY+LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I
Sbjct: 174 LPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIK 233
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
KP+S DY FEDF+I Y+P I AP+AI
Sbjct: 234 RKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1AIQ|A Chain A, Crystal Structure Of Thymidylate Synthase R126e Mutant
pdb|1AIQ|B Chain B, Crystal Structure Of Thymidylate Synthase R126e Mutant
pdb|1AJM|A Chain A, Crystal Structure Of Thymidylate Synthase R126e Mutant
Length = 264
Score = 120 bits (300), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 66/91 (72%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
LPFNIASY+LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I
Sbjct: 174 LPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIK 233
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
KP+S DY FEDF+I Y+P I AP+AI
Sbjct: 234 RKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1FFL|A Chain A, Crystal Structure Of The Apo-Thymidylate Synthase R166q
Mutant
pdb|1FWM|A Chain A, Crystal Structure Of The Thymidylate Synthase R166q Mutant
pdb|1FWM|B Chain B, Crystal Structure Of The Thymidylate Synthase R166q Mutant
Length = 264
Score = 120 bits (300), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 66/91 (72%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
LPFNIASY+LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I
Sbjct: 174 LPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIK 233
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
KP+S DY FEDF+I Y+P I AP+AI
Sbjct: 234 RKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1JG0|A Chain A, Crystal Structure Of Escherichia Coli Thymidylate Synthase
Complexed With 2'-Deoxyuridine-5'-Monophosphate And
N,O-Didansyl-L-Tyrosine
pdb|1JG0|B Chain B, Crystal Structure Of Escherichia Coli Thymidylate Synthase
Complexed With 2'-Deoxyuridine-5'-Monophosphate And
N,O-Didansyl-L-Tyrosine
Length = 264
Score = 120 bits (300), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 66/91 (72%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
LPFNIASY+LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I
Sbjct: 174 LPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIK 233
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
KP+S DY FEDF+I Y+P I AP+AI
Sbjct: 234 RKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|2VF0|A Chain A, Crystal Structure Of The Thymidylate Synthase K48q
Complexed With 5no2dump And Bw1843u89
pdb|2VF0|B Chain B, Crystal Structure Of The Thymidylate Synthase K48q
Complexed With 5no2dump And Bw1843u89
Length = 264
Score = 120 bits (300), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 66/91 (72%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
LPFNIASY+LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I
Sbjct: 174 LPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIK 233
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
KP+S DY FEDF+I Y+P I AP+AI
Sbjct: 234 RKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1KCE|A Chain A, E. Coli Thymidylate Synthase Mutant E58q In Complex With
Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1KCE|B Chain B, E. Coli Thymidylate Synthase Mutant E58q In Complex With
Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1TLS|A Chain A, Thymidylate Synthase Ternary Complex With Fdump And
Methylenetetrahydrofolate
pdb|1TLS|B Chain B, Thymidylate Synthase Ternary Complex With Fdump And
Methylenetetrahydrofolate
pdb|1F4B|A Chain A, Crystal Structure Of Escherichia Coli Thymidylate Synthase
pdb|1F4C|A Chain A, Crystal Structure Of E. Coli Thymidylate Synthase
Covalently Modified At C146 With
N-[tosyl-D-Prolinyl]amino-Ethanethiol
pdb|1F4C|B Chain B, Crystal Structure Of E. Coli Thymidylate Synthase
Covalently Modified At C146 With
N-[tosyl-D-Prolinyl]amino-Ethanethiol
pdb|1F4E|A Chain A, Crystal Structure Of E. Coli Thymidylate Synthase
Complexed With Tosyl-D-Proline
pdb|1F4F|A Chain A, Crystal Structure Of E. Coli Thymidylate Synthase
Complexed With Sp- 722
pdb|1F4F|B Chain B, Crystal Structure Of E. Coli Thymidylate Synthase
Complexed With Sp- 722
pdb|1JTQ|A Chain A, E. Coli Ts Complex With Dump And The
Pyrrolo(2,3-D)pyrimidine-Based Antifolate Ly341770
pdb|1JTQ|B Chain B, E. Coli Ts Complex With Dump And The
Pyrrolo(2,3-D)pyrimidine-Based Antifolate Ly341770
pdb|1JTU|A Chain A, E. Coli Thymidylate Synthase In A Complex With Dump And
Ly338913, A Polyglutamylated
Pyrrolo(2,3-d)pyrimidine-based Antifolate
pdb|1JTU|B Chain B, E. Coli Thymidylate Synthase In A Complex With Dump And
Ly338913, A Polyglutamylated
Pyrrolo(2,3-d)pyrimidine-based Antifolate
pdb|1JUT|A Chain A, E. Coli Thymidylate Synthase Bound To Dump And Ly338529, A
Pyrrolo(2, 3-d)pyrimidine-based Antifolate
pdb|1JUT|B Chain B, E. Coli Thymidylate Synthase Bound To Dump And Ly338529, A
Pyrrolo(2, 3-d)pyrimidine-based Antifolate
pdb|1KZI|A Chain A, Crystal Structure Of EctsDUMPTHF COMPLEX
pdb|1KZI|B Chain B, Crystal Structure Of EctsDUMPTHF COMPLEX
pdb|2A9W|A Chain A, E. Coli Ts Complexed With Dump And Inhibitor Ga9
pdb|2A9W|B Chain B, E. Coli Ts Complexed With Dump And Inhibitor Ga9
pdb|2A9W|C Chain C, E. Coli Ts Complexed With Dump And Inhibitor Ga9
pdb|2A9W|D Chain D, E. Coli Ts Complexed With Dump And Inhibitor Ga9
pdb|2FTQ|A Chain A, E. Coli Thymidylate Synthase At 1.8 A Resolution
pdb|1TSN|A Chain A, Thymidylate Synthase Ternary Complex With Fdump And
Methylenetetrahydrofolate
pdb|3B9H|A Chain A, E. Coli Thymidylate Synthase Complexed With
5-Nitro-2'-Deoxy Uridine
pdb|3BHL|A Chain A, E.Coli Thymidylate Synthase Complexes With 5-No2dump And
Tetrahydrofolate At 1.4 A Resolution
pdb|3BHL|B Chain B, E.Coli Thymidylate Synthase Complexes With 5-No2dump And
Tetrahydrofolate At 1.4 A Resolution
pdb|3BHR|A Chain A, E. Coli Ts Complexed With 5-No2dump And Tetrahydrofolate
At 1.9 A Resolution (Space Group 152)
pdb|4IW5|A Chain A, Thymidylate Synthase Ternary Complex With Dump And Cb3717
pdb|4IW5|B Chain B, Thymidylate Synthase Ternary Complex With Dump And Cb3717
Length = 264
Score = 120 bits (300), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 66/91 (72%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
LPFNIASY+LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I
Sbjct: 174 LPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIK 233
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
KP+S DY FEDF+I Y+P I AP+AI
Sbjct: 234 RKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1KZJ|A Chain A, Crystal Structure Of Ects W80g/dump/cb3717 Complex
pdb|1KZJ|B Chain B, Crystal Structure Of Ects W80g/dump/cb3717 Complex
pdb|1KZJ|C Chain C, Crystal Structure Of Ects W80g/dump/cb3717 Complex
pdb|1KZJ|D Chain D, Crystal Structure Of Ects W80g/dump/cb3717 Complex
pdb|1KZJ|E Chain E, Crystal Structure Of Ects W80g/dump/cb3717 Complex
pdb|1KZJ|F Chain F, Crystal Structure Of Ects W80g/dump/cb3717 Complex
Length = 264
Score = 120 bits (300), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 66/91 (72%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
LPFNIASY+LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I
Sbjct: 174 LPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIK 233
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
KP+S DY FEDF+I Y+P I AP+AI
Sbjct: 234 RKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1ZPR|A Chain A, E. Coli Thymidylate Synthase Mutant E58q In Complex With
Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1ZPR|B Chain B, E. Coli Thymidylate Synthase Mutant E58q In Complex With
Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump)
Length = 264
Score = 120 bits (300), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 66/91 (72%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
LPFNIASY+LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I
Sbjct: 174 LPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIK 233
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
KP+S DY FEDF+I Y+P I AP+AI
Sbjct: 234 RKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|2FTN|A Chain A, E. Coli Thymidylate Synthase Y94f Mutant
pdb|2FTO|X Chain X, Y94f Mutant Of Thymidylate Synthase Bound To
Thymidine-5'-Phosphate And 10-Propargyl-5,8-Dideazafolid
Acid
Length = 264
Score = 120 bits (300), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 66/91 (72%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
LPFNIASY+LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I
Sbjct: 174 LPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIK 233
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
KP+S DY FEDF+I Y+P I AP+AI
Sbjct: 234 RKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1DNA|A Chain A, D221(169)n Mutant Does Not Promote Opening Of The Cofactor
Imidazolidine Ring
pdb|1DNA|B Chain B, D221(169)n Mutant Does Not Promote Opening Of The Cofactor
Imidazolidine Ring
pdb|1BJG|A Chain A, D221(169)n Mutant Does Not Promote Opening Of The Cofactor
Imidazolidine Ring
Length = 264
Score = 120 bits (300), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 66/91 (72%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
LPFNIASY+LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I
Sbjct: 174 LPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIK 233
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
KP+S DY FEDF+I Y+P I AP+AI
Sbjct: 234 RKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1F4G|A Chain A, Crystal Structure Of E. Coli Thymidylate Synthase
Complexed With Sp- 876
pdb|1F4G|B Chain B, Crystal Structure Of E. Coli Thymidylate Synthase
Complexed With Sp- 876
Length = 264
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 65/91 (71%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
LPFNIASY+LL+H+ A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I
Sbjct: 174 LPFNIASYALLVHMXAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIK 233
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
KP+S DY FEDF+I Y+P I AP+AI
Sbjct: 234 RKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|2G8M|A Chain A, Escherichia Coli Thymidylate Synthase Y209w In Complex
With Substrate, Dump, And A Cofactor Analog, Cb3717
pdb|2G8M|B Chain B, Escherichia Coli Thymidylate Synthase Y209w In Complex
With Substrate, Dump, And A Cofactor Analog, Cb3717
pdb|2G8X|A Chain A, Escherichia Coli Y209w Apoprotein
pdb|2G8X|B Chain B, Escherichia Coli Y209w Apoprotein
pdb|4GEV|A Chain A, E. Coli Thymidylate Synthase Y209w Variant In Complex With
Substrate And A Cofactor Analog
pdb|4GEV|B Chain B, E. Coli Thymidylate Synthase Y209w Variant In Complex With
Substrate And A Cofactor Analog
Length = 264
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 66/91 (72%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
LPFNIASY+LL+H++A + L+VGDF+WTGGD HL+ NH+DQ QL R P LP L I
Sbjct: 174 LPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLWSNHMDQTHLQLSREPRPLPKLIIK 233
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
KP+S DY FEDF+I Y+P I AP+AI
Sbjct: 234 RKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|2TSC|A Chain A, Structure, Multiple Site Binding, And Segmental
Accomodation In Thymidylate Synthase On Binding DUMP AND
An Anti-Folate
pdb|2TSC|B Chain B, Structure, Multiple Site Binding, And Segmental
Accomodation In Thymidylate Synthase On Binding DUMP AND
An Anti-Folate
Length = 264
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 65/91 (71%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
LPFNIASY+LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I
Sbjct: 174 LPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIK 233
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
P+S DY FEDF+I Y+P I AP+AI
Sbjct: 234 RAPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1QQQ|A Chain A, Crystal Structure Analysis Of Ser254 Mutant Of Escherichia
Coli Thymidylate Synthase
Length = 264
Score = 117 bits (294), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 65/91 (71%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
LPFNIASY+LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I
Sbjct: 174 LPFNIASYALLVHMMAQQXDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIK 233
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
KP+S DY FEDF+I Y+ I AP+AI
Sbjct: 234 RKPESIFDYRFEDFEIEGYDSHPGIKAPVAI 264
>pdb|1BQ1|A Chain A, E. Coli Thymidylate Synthase Mutant N177a In Complex With
Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1BQ1|B Chain B, E. Coli Thymidylate Synthase Mutant N177a In Complex With
Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1BQ2|A Chain A, E. Coli Thymidylate Synthase Mutant N177a
Length = 264
Score = 117 bits (293), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 65/91 (71%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
LPF IASY+LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I
Sbjct: 174 LPFAIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIK 233
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
KP+S DY FEDF+I Y+P I AP+AI
Sbjct: 234 RKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|3BFI|A Chain A, E. Coli Thymidylate Synthase Y209m Mutant Complexed With
5-nitro-dump
Length = 264
Score = 117 bits (292), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 65/91 (71%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
LPFNIASY+LL+H++A + L+VGDF+WTGGD HL NH+DQ QL R P LP L I
Sbjct: 174 LPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLMSNHMDQTHLQLSREPRPLPKLIIK 233
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
KP+S DY FEDF+I Y+P I AP+AI
Sbjct: 234 RKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|4F2V|A Chain A, Crystal Structure Of De Novo Designed Serine Hydrolase,
Northeast Structural Genomics Consortium (Nesg) Target
Or165
pdb|4F2V|B Chain B, Crystal Structure Of De Novo Designed Serine Hydrolase,
Northeast Structural Genomics Consortium (Nesg) Target
Or165
Length = 272
Score = 106 bits (265), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/93 (54%), Positives = 61/93 (65%)
Query: 106 IRLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLT 165
+ LPF IAS +LL+H A + L+VGDF+ TGGD HLY NH DQ QL R P LP L
Sbjct: 172 LSLPFAIASGALLVHXXAQQCDLEVGDFVXTGGDTHLYSNHXDQTHLQLSREPRPLPKLI 231
Query: 166 ILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
I KP+S DY FEDF+I Y+P I AP+AI
Sbjct: 232 IKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|3QJ7|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis
Thymidylate Synthase (Thya) Bound To Dump
pdb|3QJ7|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis
Thymidylate Synthase (Thya) Bound To Dump
pdb|3QJ7|C Chain C, Crystal Structure Of The Mycobacterium Tuberculosis
Thymidylate Synthase (Thya) Bound To Dump
pdb|3QJ7|D Chain D, Crystal Structure Of The Mycobacterium Tuberculosis
Thymidylate Synthase (Thya) Bound To Dump
Length = 264
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 64/91 (70%), Gaps = 1/91 (1%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL H++A + GL VG+FIWTGGDCH+Y NH++Q R QL R P P L +L
Sbjct: 175 VPFNIASYALLTHMMAAQAGLSVGEFIWTGGDCHIYDNHVEQVRLQLSREPRPYPKL-LL 233
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
S +Y +ED + +Y+P +I AP+A+
Sbjct: 234 ADRDSIFEYTYEDIVVKNYDPHPAIKAPVAV 264
>pdb|3UWL|B Chain B, Crystal Structure Of Enteroccocus Faecalis Thymidylate
Synthase (efts) In Complex With 5-formyl
Tetrahydrofolate
pdb|3UWL|D Chain D, Crystal Structure Of Enteroccocus Faecalis Thymidylate
Synthase (efts) In Complex With 5-formyl
Tetrahydrofolate
Length = 315
Score = 103 bits (257), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 64/91 (70%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL H+IAHETGL+VG+F+ T GD HLY NH++Q ++QL R S P L +
Sbjct: 225 VPFNIASYALLTHLIAHETGLEVGEFVHTLGDAHLYQNHVEQMQEQLSREVRSFPTLVLN 284
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
S D++ ED ++ Y+P +I APIA+
Sbjct: 285 PDKASVFDFDMEDIKVEGYDPHPTIKAPIAV 315
>pdb|3UWL|A Chain A, Crystal Structure Of Enteroccocus Faecalis Thymidylate
Synthase (efts) In Complex With 5-formyl
Tetrahydrofolate
pdb|3UWL|C Chain C, Crystal Structure Of Enteroccocus Faecalis Thymidylate
Synthase (efts) In Complex With 5-formyl
Tetrahydrofolate
Length = 315
Score = 103 bits (257), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 64/91 (70%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL H+IAHETGL+VG+F+ T GD HLY NH++Q ++QL R S P L +
Sbjct: 225 VPFNIASYALLTHLIAHETGLEVGEFVHTLGDAHLYQNHVEQMQEQLSREVRSFPTLVLN 284
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
S D++ ED ++ Y+P +I APIA+
Sbjct: 285 PDKASVFDFDMEDIKVEGYDPHPTIKAPIAV 315
>pdb|1VZB|A Chain A, L. Casei Thymidylate Synthase Mutant E60q Binary Complex
With Dump
pdb|1VZC|A Chain A, L. Casei Thymidylate Synthase Mutant E60q Binary Complex
With Fdump
pdb|1VZD|A Chain A, L. Casei Thymidylate Synthase Mutant E60q Ternary Complex
With Fdump And Cb3717
pdb|1VZE|A Chain A, L. Casei Thymidylate Synthase Mutant E60q Ternary Complex
With Dump And Cb3717
Length = 316
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 64/91 (70%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL H++AHE GL+VG+FI T GD HLY+NHLDQ ++QL R P P L +
Sbjct: 226 VPFNIASYALLTHLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLN 285
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
D++ +D ++ +Y+P +I AP+A+
Sbjct: 286 PDKHDIFDFDMKDIKLLNYDPYPAIKAPVAV 316
>pdb|1BPJ|A Chain A, Thymidylate Synthase R178t, R179t Double Mutant
Length = 316
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 64/91 (70%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL H++AHE GL+VG+FI T GD HLY+NHLDQ ++QL R P P L +
Sbjct: 226 VPFNIASYALLTHLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLN 285
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
D++ +D ++ +Y+P +I AP+A+
Sbjct: 286 PDKHDIFDFDMKDIKLLNYDPYPAIKAPVAV 316
>pdb|1VZA|A Chain A, Thymidylate Synthase E60d Mutant Binary Complex With 2'-
Deoxyuridine 5'-Monophosphate (Dump)
Length = 316
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 64/91 (70%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL H++AHE GL+VG+FI T GD HLY+NHLDQ ++QL R P P L +
Sbjct: 226 VPFNIASYALLTHLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLN 285
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
D++ +D ++ +Y+P +I AP+A+
Sbjct: 286 PDKHDIFDFDMKDIKLLNYDPYPAIKAPVAV 316
>pdb|1LCA|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And Cb3717
pdb|1LCB|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dtmp And H2folate
pdb|1LCE|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And Ch2thf
pdb|1NJE|A Chain A, Thymidylate Synthase With 2'-Deoxycytidine
5'-Monophosphate (Dcmp)
pdb|1THY|A Chain A, Refined Structures Of Substrate-Bound And Phosphate-Bound
Thymidylate Synthase From Lactobacillus Casei
pdb|1TSL|A Chain A, L. Casei Thymidylate Synthase With Species Specific
Inhibitor
pdb|1TSM|A Chain A, L. Casei Thymidylate Synthase With Species Specific
Inhibitor
pdb|2TDM|A Chain A, Structure Of Thymidylate Synthase
pdb|4TMS|A Chain A, Plastic Adaptation Toward Mutations In Proteins:
Structural Comparison Of Thymidylate Synthases
pdb|3BNZ|A Chain A, Crystal Structure Of Thymidylate Synthase Ternary Complex
With Dump And 8a Inhibitor
pdb|3BYX|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And The Phtalimidic Derivative C00 In Multiple
Binding Modes
pdb|3BZ0|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And The Phtalimidic Derivative C00
pdb|3C06|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And The Phtalimidic Derivative 14c In Multiple
Binding Modes-Mode 1
pdb|3C0A|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And The Phtalimidic Derivative 14c In Multiple
Binding Modes-Mode 2
pdb|3IJZ|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And Pthalimidic Derivative 15c
pdb|3IK0|A Chain A, Lactobacillus Casei Thymidylate Synthase In Ternary
Complex With Dump And The Phtalimidic Derivative 7c1
pdb|3IK1|A Chain A, Lactobacillus Casei Thymidylate Synthase In Ternary
Complex With Dump And The Phtalimidic Derivative 20c
Length = 316
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 64/91 (70%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL H++AHE GL+VG+FI T GD HLY+NHLDQ ++QL R P P L +
Sbjct: 226 VPFNIASYALLTHLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLN 285
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
D++ +D ++ +Y+P +I AP+A+
Sbjct: 286 PDKHDIFDFDMKDIKLLNYDPYPAIKAPVAV 316
>pdb|1BO7|A Chain A, Thymidylate Synthase R179t Mutant
Length = 316
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 64/91 (70%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL H++AHE GL+VG+FI T GD HLY+NHLDQ ++QL R P P L +
Sbjct: 226 VPFNIASYALLTHLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLN 285
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
D++ +D ++ +Y+P +I AP+A+
Sbjct: 286 PDKHDIFDFDMKDIKLLNYDPYPAIKAPVAV 316
>pdb|1BO8|A Chain A, Thymidylate Synthase R178t Mutant
Length = 316
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 64/91 (70%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL H++AHE GL+VG+FI T GD HLY+NHLDQ ++QL R P P L +
Sbjct: 226 VPFNIASYALLTHLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLN 285
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
D++ +D ++ +Y+P +I AP+A+
Sbjct: 286 PDKHDIFDFDMKDIKLLNYDPYPAIKAPVAV 316
>pdb|1BP0|A Chain A, Thymidylate Synthase R23i Mutant
Length = 316
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 64/91 (70%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL H++AHE GL+VG+FI T GD HLY+NHLDQ ++QL R P P L +
Sbjct: 226 VPFNIASYALLTHLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLN 285
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
D++ +D ++ +Y+P +I AP+A+
Sbjct: 286 PDKHDIFDFDMKDIKLLNYDPYPAIKAPVAV 316
>pdb|1TSX|A Chain A, Thymidylate Synthase R179e Mutant
Length = 316
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 64/91 (70%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL H++AHE GL+VG+FI T GD HLY+NHLDQ ++QL R P P L +
Sbjct: 226 VPFNIASYALLTHLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLN 285
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
D++ +D ++ +Y+P +I AP+A+
Sbjct: 286 PDKHDIFDFDMKDIKLLNYDPYPAIKAPVAV 316
>pdb|1TSV|A Chain A, Thymidylate Synthase R179a Mutant
pdb|1TSW|A Chain A, Thymidylate Synthase R179a Mutant
Length = 316
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 64/91 (70%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL H++AHE GL+VG+FI T GD HLY+NHLDQ ++QL R P P L +
Sbjct: 226 VPFNIASYALLTHLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLN 285
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
D++ +D ++ +Y+P +I AP+A+
Sbjct: 286 PDKHDIFDFDMKDIKLLNYDPYPAIKAPVAV 316
>pdb|1TSY|A Chain A, Thymidylate Synthase R179k Mutant
pdb|1TSZ|A Chain A, Thymidylate Synthase R179k Mutant
Length = 316
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 64/91 (70%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL H++AHE GL+VG+FI T GD HLY+NHLDQ ++QL R P P L +
Sbjct: 226 VPFNIASYALLTHLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLN 285
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
D++ +D ++ +Y+P +I AP+A+
Sbjct: 286 PDKHDIFDFDMKDIKLLNYDPYPAIKAPVAV 316
>pdb|1BP6|A Chain A, Thymidylate Synthase R23i, R179t Double Mutant
Length = 316
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 64/91 (70%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL H++AHE GL+VG+FI T GD HLY+NHLDQ ++QL R P P L +
Sbjct: 226 VPFNIASYALLTHLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLN 285
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
D++ +D ++ +Y+P +I AP+A+
Sbjct: 286 PDKHDIFDFDMKDIKLLNYDPYPAIKAPVAV 316
>pdb|1HW3|A Chain A, Structure Of Human Thymidylate Synthase Suggests
Advantages Of Chemotherapy With Noncompetitive
Inhibitors
pdb|1YPV|A Chain A, Structure Of Human Thymidylate Synthase At Low Salt
Conditions
pdb|2ONB|A Chain A, Human Thymidylate Synthase At Low Salt Conditions With
Pdpa Bound
Length = 313
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 61/91 (67%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R P P L IL
Sbjct: 223 VPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRIL 282
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
K + D+ EDFQI YNP +I +A+
Sbjct: 283 RKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|3N5G|A Chain A, Crystal Structure Of Histidine-Tagged Human Thymidylate
Synthase
Length = 325
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 61/91 (67%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R P P L IL
Sbjct: 235 VPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRIL 294
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
K + D+ EDFQI YNP +I +A+
Sbjct: 295 RKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 325
>pdb|3EGY|X Chain X, Crystal Structure Of Human Thymidyalte Synthase A191k With
Loop 181- 197 Stabilized In The Inactive Conformation
Length = 313
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 61/91 (67%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R P P L IL
Sbjct: 223 VPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRIL 282
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
K + D+ EDFQI YNP +I +A+
Sbjct: 283 RKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|3N5E|A Chain A, Crystal Structure Of Human Thymidylate Synthase Bound To A
Peptide Inhibitor
Length = 325
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 61/91 (67%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R P P L IL
Sbjct: 235 VPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRIL 294
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
K + D+ EDFQI YNP +I +A+
Sbjct: 295 RKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 325
>pdb|3EBU|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
Length = 313
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 61/91 (67%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R P P L IL
Sbjct: 223 VPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRIL 282
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
K + D+ EDFQI YNP +I +A+
Sbjct: 283 RKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|1HW4|A Chain A, Structure Of Thymidylate Synthase Suggests Advantages Of
Chemotherapy With Noncompetitive Inhibitors
Length = 355
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 61/91 (67%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R P P L IL
Sbjct: 265 VPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRIL 324
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
K + D+ EDFQI YNP +I +A+
Sbjct: 325 RKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 355
>pdb|4E28|A Chain A, Structure Of Human Thymidylate Synthase In Inactive
Conformation With A Novel Non-Peptidic Inhibitor
Length = 325
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 61/91 (67%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R P P L IL
Sbjct: 235 VPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRIL 294
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
K + D+ EDFQI YNP +I +A+
Sbjct: 295 RKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 325
>pdb|3N5E|B Chain B, Crystal Structure Of Human Thymidylate Synthase Bound To A
Peptide Inhibitor
Length = 325
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 61/91 (67%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R P P L IL
Sbjct: 235 VPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRIL 294
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
K + D+ EDFQI YNP +I +A+
Sbjct: 295 RKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 325
>pdb|3EHI|X Chain X, Crystal Structure Of Human Thymidyalte Synthase M190k With
Loop 181- 197 Stabilized In The Inactive Conformation
Length = 313
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 61/91 (67%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R P P L IL
Sbjct: 223 VPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRIL 282
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
K + D+ EDFQI YNP +I +A+
Sbjct: 283 RKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|2RD8|B Chain B, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
Length = 313
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 61/91 (67%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R P P L IL
Sbjct: 223 VPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRIL 282
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
K + D+ EDFQI YNP +I +A+
Sbjct: 283 RKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|3EAW|X Chain X, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
Length = 313
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 61/91 (67%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R P P L IL
Sbjct: 223 VPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRIL 282
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
K + D+ EDFQI YNP +I +A+
Sbjct: 283 RKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|2RD8|A Chain A, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
pdb|2RDA|A Chain A, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
pdb|2RDA|B Chain B, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
pdb|2RDA|C Chain C, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
pdb|2RDA|D Chain D, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
pdb|2RDA|E Chain E, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
pdb|2RDA|F Chain F, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
pdb|3H9K|A Chain A, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3H9K|B Chain B, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3H9K|C Chain C, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3H9K|D Chain D, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3H9K|E Chain E, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3HB8|A Chain A, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3HB8|B Chain B, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3HB8|C Chain C, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3HB8|D Chain D, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3HB8|E Chain E, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3OB7|A Chain A, Human Thymidylate Synthase R163k With Cys 195 Covalently
Modified By Glutathione
pdb|3OB7|B Chain B, Human Thymidylate Synthase R163k With Cys 195 Covalently
Modified By Glutathione
pdb|3OB7|C Chain C, Human Thymidylate Synthase R163k With Cys 195 Covalently
Modified By Glutathione
pdb|3OB7|D Chain D, Human Thymidylate Synthase R163k With Cys 195 Covalently
Modified By Glutathione
pdb|3OB7|E Chain E, Human Thymidylate Synthase R163k With Cys 195 Covalently
Modified By Glutathione
Length = 313
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 61/91 (67%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R P P L IL
Sbjct: 223 VPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRIL 282
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
K + D+ EDFQI YNP +I +A+
Sbjct: 283 RKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|3GH2|X Chain X, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
Length = 313
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 61/91 (67%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R P P L IL
Sbjct: 223 VPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRIL 282
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
K + D+ EDFQI YNP +I +A+
Sbjct: 283 RKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|1JU6|A Chain A, Human Thymidylate Synthase Complex With Dump And Ly231514,
A Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JU6|B Chain B, Human Thymidylate Synthase Complex With Dump And Ly231514,
A Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JU6|C Chain C, Human Thymidylate Synthase Complex With Dump And Ly231514,
A Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JU6|D Chain D, Human Thymidylate Synthase Complex With Dump And Ly231514,
A Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JUJ|A Chain A, Human Thymidylate Synthase Bound To Dump And Ly231514, A
Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JUJ|B Chain B, Human Thymidylate Synthase Bound To Dump And Ly231514, A
Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JUJ|C Chain C, Human Thymidylate Synthase Bound To Dump And Ly231514, A
Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JUJ|D Chain D, Human Thymidylate Synthase Bound To Dump And Ly231514, A
Pyrrolo(2,3-D)pyrimidine-Based Antifolate
Length = 313
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 61/91 (67%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R P P L IL
Sbjct: 223 VPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRIL 282
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
K + D+ EDFQI YNP +I +A+
Sbjct: 283 RKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|1HZW|A Chain A, Crystal Structure Of Human Thymidylate Synthase
pdb|1HZW|B Chain B, Crystal Structure Of Human Thymidylate Synthase
pdb|1I00|A Chain A, Crystal Structure Of Human Thymidylate Synthase, Ternary
Complex With Dump And Tomudex
pdb|1I00|B Chain B, Crystal Structure Of Human Thymidylate Synthase, Ternary
Complex With Dump And Tomudex
Length = 290
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 61/91 (67%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R P P L IL
Sbjct: 200 VPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRIL 259
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
K + D+ EDFQI YNP +I +A+
Sbjct: 260 RKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 290
>pdb|3EF9|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3GH0|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
Length = 313
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 61/91 (67%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R P P L IL
Sbjct: 223 VPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRIL 282
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
K + D+ EDFQI YNP +I +A+
Sbjct: 283 RKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|3GG5|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3GG5|B Chain B, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3GG5|C Chain C, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3GG5|D Chain D, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
Length = 313
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 61/91 (67%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R P P L IL
Sbjct: 223 VPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRIL 282
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
K + D+ EDFQI YNP +I +A+
Sbjct: 283 RKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|3EDW|X Chain X, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3EJL|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3EJL|B Chain B, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3EJL|C Chain C, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3EJL|D Chain D, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
Length = 313
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 61/91 (67%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R P P L IL
Sbjct: 223 VPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRIL 282
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
K + D+ EDFQI YNP +I +A+
Sbjct: 283 RKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|1HVY|A Chain A, Human Thymidylate Synthase Complexed With Dump And
Raltitrexed, An Antifolate Drug, Is In The Closed
Conformation
pdb|1HVY|B Chain B, Human Thymidylate Synthase Complexed With Dump And
Raltitrexed, An Antifolate Drug, Is In The Closed
Conformation
pdb|1HVY|C Chain C, Human Thymidylate Synthase Complexed With Dump And
Raltitrexed, An Antifolate Drug, Is In The Closed
Conformation
pdb|1HVY|D Chain D, Human Thymidylate Synthase Complexed With Dump And
Raltitrexed, An Antifolate Drug, Is In The Closed
Conformation
Length = 288
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 61/91 (67%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R P P L IL
Sbjct: 198 VPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRIL 257
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
K + D+ EDFQI YNP +I +A+
Sbjct: 258 RKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 288
>pdb|3ED7|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
Length = 295
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 61/91 (67%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R P P L IL
Sbjct: 205 VPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRIL 264
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
K + D+ EDFQI YNP +I +A+
Sbjct: 265 RKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 295
>pdb|4GYH|A Chain A, Structure Of Human Thymidylate Synthase At High Salt
Conditions
pdb|4H1I|A Chain A, Structure Of Human Thymidylate Synthase At Low Salt
Conditions
pdb|4H1I|B Chain B, Structure Of Human Thymidylate Synthase At Low Salt
Conditions
pdb|4H1I|C Chain C, Structure Of Human Thymidylate Synthase At Low Salt
Conditions
pdb|4H1I|D Chain D, Structure Of Human Thymidylate Synthase At Low Salt
Conditions
Length = 318
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 61/91 (67%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R P P L IL
Sbjct: 223 VPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRIL 282
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
K + D+ EDFQI YNP +I +A+
Sbjct: 283 RKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|1TDA|A Chain A, Structures Of Thymidylate Synthase With A C-Terminal
Deletion: Role Of The C-Terminus In Alignment Of DUMP
AND CH2H4FOLATE
pdb|1TDB|A Chain A, Structures Of Thymidylate Synthase With A C-Terminal
Deletion: Role Of The C-Terminus In Alignment Of DUMP
AND CH2H4FOLATE
pdb|1TDC|A Chain A, Structures Of Thymidylate Synthase With A C-Terminal
Deletion: Role Of The C-Terminus In Alignment Of DUMP
AND CH2H4FOLATE
pdb|2TDD|A Chain A, Structures Of Thymidylate Synthase With A C-Terminal
Deletion: Role Of The C-Terminus In Alignment Of DUMP
AND CH2H4FOLATE
Length = 315
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 63/90 (70%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL H++AHE GL+VG+FI T GD HLY+NHLDQ ++QL R P P L +
Sbjct: 226 VPFNIASYALLTHLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLN 285
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIA 197
D++ +D ++ +Y+P +I AP+A
Sbjct: 286 PDKHDIFDFDMKDIKLLNYDPYPAIKAPVA 315
>pdb|2G86|A Chain A, L. Casei Thymidylate Synthase Y261f In Complex With
Substrate, Dump
Length = 316
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 64/91 (70%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL H++AHE GL+VG+FI T GD HL++NHLDQ ++QL R P P L +
Sbjct: 226 VPFNIASYALLTHLVAHECGLEVGEFIHTFGDAHLFVNHLDQIKEQLSRTPRPAPTLQLN 285
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
D++ +D ++ +Y+P +I AP+A+
Sbjct: 286 PDKHDIFDFDMKDIKLLNYDPYPAIKAPVAV 316
>pdb|1NJC|A Chain A, Thymidylate Synthase, Mutation, N229d With
2'-Deoxycytidine 5'- Monophosphate (Dcmp)
pdb|1NJD|A Chain A, Thymidylate Synthase, Mutation, N229d With 2'-Deoxyuridine
5'- Monophosphate (Dump)
Length = 316
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 64/91 (70%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PF+IASY+LL H++AHE GL+VG+FI T GD HLY+NHLDQ ++QL R P P L +
Sbjct: 226 VPFDIASYALLTHLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLN 285
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
D++ +D ++ +Y+P +I AP+A+
Sbjct: 286 PDKHDIFDFDMKDIKLLNYDPYPAIKAPVAV 316
>pdb|3IHI|A Chain A, Crystal Structure Of Mouse Thymidylate Synthase
pdb|3IHI|B Chain B, Crystal Structure Of Mouse Thymidylate Synthase
pdb|4E5O|A Chain A, Crystal Structure Of Mouse Thymidylate Synthase In Complex
With Dump
pdb|4E5O|B Chain B, Crystal Structure Of Mouse Thymidylate Synthase In Complex
With Dump
pdb|4E5O|C Chain C, Crystal Structure Of Mouse Thymidylate Synthase In Complex
With Dump
pdb|4E5O|D Chain D, Crystal Structure Of Mouse Thymidylate Synthase In Complex
With Dump
pdb|4E5O|E Chain E, Crystal Structure Of Mouse Thymidylate Synthase In Complex
With Dump
pdb|4E5O|F Chain F, Crystal Structure Of Mouse Thymidylate Synthase In Complex
With Dump
pdb|4EB4|A Chain A, Crystal Structure Of Mouse Thymidylate Synthase In Ternary
Complex With Dump And Tomudex
pdb|4EB4|B Chain B, Crystal Structure Of Mouse Thymidylate Synthase In Ternary
Complex With Dump And Tomudex
pdb|4EB4|C Chain C, Crystal Structure Of Mouse Thymidylate Synthase In Ternary
Complex With Dump And Tomudex
pdb|4EB4|D Chain D, Crystal Structure Of Mouse Thymidylate Synthase In Ternary
Complex With Dump And Tomudex
Length = 307
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 62/91 (68%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL ++IAH TGL+ GDF+ T GD H+YLNH++ + QL R P P L IL
Sbjct: 217 VPFNIASYALLTYMIAHITGLQPGDFVHTLGDAHIYLNHIEPLKIQLQREPRPFPKLKIL 276
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
K ++ D+ EDFQI YNP +I +A+
Sbjct: 277 RKVETIDDFKVEDFQIEGYNPHPTIKMEMAV 307
>pdb|1RTS|A Chain A, Thymidylate Synthase From Rat In Ternary Complex With Dump
And Tomudex
pdb|1RTS|B Chain B, Thymidylate Synthase From Rat In Ternary Complex With Dump
And Tomudex
pdb|2TSR|A Chain A, Thymidylate Synthase From Rat In Ternary Complex With Dump
And Tomudex
pdb|2TSR|B Chain B, Thymidylate Synthase From Rat In Ternary Complex With Dump
And Tomudex
pdb|2TSR|C Chain C, Thymidylate Synthase From Rat In Ternary Complex With Dump
And Tomudex
pdb|2TSR|D Chain D, Thymidylate Synthase From Rat In Ternary Complex With Dump
And Tomudex
Length = 307
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 62/91 (68%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL ++IAH TGL+ GDF+ T GD H+YLNH++ + QL R P P L IL
Sbjct: 217 VPFNIASYALLTYMIAHITGLQPGDFVHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRIL 276
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
K ++ D+ EDFQI YNP +I +A+
Sbjct: 277 RKVETIDDFKVEDFQIEGYNPHPTIKMEMAV 307
>pdb|1JMI|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
pdb|1TVW|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
Length = 316
Score = 96.7 bits (239), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 64/91 (70%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PF+IASY+LL H++AHE GL+VG+FI T GD HLY+NHLDQ ++QL R P P L +
Sbjct: 226 VPFSIASYALLTHLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLN 285
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
D++ +D ++ +Y+P +I AP+A+
Sbjct: 286 PDKHDIFDFDMKDIKLLNYDPYPAIKAPVAV 316
>pdb|2G8D|A Chain A, Lactobacillus Casei Thymidylate Synthase Y261w-dump
Complex
Length = 316
Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 64/91 (70%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL H++AHE GL+VG+FI T GD HL++NHLDQ ++QL R P P L +
Sbjct: 226 VPFNIASYALLTHLVAHECGLEVGEFIHTFGDAHLWVNHLDQIKEQLSRTPRPAPTLQLN 285
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
D++ +D ++ +Y+P +I AP+A+
Sbjct: 286 PDKHDIFDFDMKDIKLLNYDPYPAIKAPVAV 316
>pdb|1JMG|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
Length = 316
Score = 96.3 bits (238), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 63/91 (69%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PF IASY+LL H++AHE GL+VG+FI T GD HLY+NHLDQ ++QL R P P L +
Sbjct: 226 VPFGIASYALLTHLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLN 285
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
D++ +D ++ +Y+P +I AP+A+
Sbjct: 286 PDKHDIFDFDMKDIKLLNYDPYPAIKAPVAV 316
>pdb|1JMF|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
pdb|1TVU|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
Length = 316
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 63/91 (69%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PF IASY+LL H++AHE GL+VG+FI T GD HLY+NHLDQ ++QL R P P L +
Sbjct: 226 VPFAIASYALLTHLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLN 285
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
D++ +D ++ +Y+P +I AP+A+
Sbjct: 286 PDKHDIFDFDMKDIKLLNYDPYPAIKAPVAV 316
>pdb|2G8A|A Chain A, Lactobacillus Casei Y261m In Complex With Substrate, Dump
Length = 316
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 63/91 (69%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL H++AHE GL+VG+FI T GD HL +NHLDQ ++QL R P P L +
Sbjct: 226 VPFNIASYALLTHLVAHECGLEVGEFIHTFGDAHLMVNHLDQIKEQLSRTPRPAPTLQLN 285
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
D++ +D ++ +Y+P +I AP+A+
Sbjct: 286 PDKHDIFDFDMKDIKLLNYDPYPAIKAPVAV 316
>pdb|2G89|A Chain A, L. Casei Thymidylate Synthase Y261a In Complex With
Substrate, Dump
Length = 316
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 63/91 (69%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL H++AHE GL+VG+FI T GD HL +NHLDQ ++QL R P P L +
Sbjct: 226 VPFNIASYALLTHLVAHECGLEVGEFIHTFGDAHLAVNHLDQIKEQLSRTPRPAPTLQLN 285
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
D++ +D ++ +Y+P +I AP+A+
Sbjct: 286 PDKHDIFDFDMKDIKLLNYDPYPAIKAPVAV 316
>pdb|1NJA|A Chain A, Thymidylate Synthase, Mutation, N229c With
2'-deoxycytidine 5'- Monophosphate (dcmp)
pdb|1NJB|A Chain A, Thymidylate Synthase
pdb|1TVV|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
Length = 316
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 63/91 (69%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PF IASY+LL H++AHE GL+VG+FI T GD HLY+NHLDQ ++QL R P P L +
Sbjct: 226 VPFCIASYALLTHLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLN 285
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
D++ +D ++ +Y+P +I AP+A+
Sbjct: 286 PDKHDIFDFDMKDIKLLNYDPYPAIKAPVAV 316
>pdb|1JMH|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
Length = 316
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 63/91 (69%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PF IASY+LL H++AHE GL+VG+FI T GD HLY+NHLDQ ++QL R P P L +
Sbjct: 226 VPFIIASYALLTHLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLN 285
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
D++ +D ++ +Y+P +I AP+A+
Sbjct: 286 PDKHDIFDFDMKDIKLLNYDPYPAIKAPVAV 316
>pdb|3IX6|A Chain A, Crystal Structure Of Thymidylate Synthase Thya From
Brucella Melitensis
pdb|3IX6|B Chain B, Crystal Structure Of Thymidylate Synthase Thya From
Brucella Melitensis
Length = 360
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 59/91 (64%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL +IA TGLK G+FI T GD H+Y NH +QAR QL R P LP + I
Sbjct: 270 VPFNIASYALLTMMIAQVTGLKPGEFIHTLGDAHIYSNHFEQARLQLTRTPKKLPVMHIN 329
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
K + FEDF+++ Y +I APIA+
Sbjct: 330 PDVKDLFAFRFEDFRLDGYEADPTIKAPIAV 360
>pdb|4DQ1|A Chain A, Thymidylate Synthase From Staphylococcus Aureus.
pdb|4DQ1|B Chain B, Thymidylate Synthase From Staphylococcus Aureus
Length = 321
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL H+IA E GL+VG+F+ T GD H+Y NH+D + QL R + P L I
Sbjct: 232 VPFNIASYALLTHLIAKECGLEVGEFVHTFGDAHIYSNHIDAIQTQLARESFNPPTLKI- 290
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
KS D N+ED +I Y +I APIA+
Sbjct: 291 NSDKSIFDINYEDLEIVDYESHPAIKAPIAV 321
>pdb|3KGB|A Chain A, Crystal Structure Of Thymidylate Synthase 12 FROM
ENCEPHALITOZOON Cuniculi At 2.2 A Resolution
Length = 294
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 60/87 (68%), Gaps = 2/87 (2%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASYSLL ++AH TGL+ G+F+ GD H+YL+H+D R+Q+ R P + P L +
Sbjct: 202 VPFNIASYSLLTILVAHLTGLQPGEFVHFLGDAHVYLDHVDSLRQQIQRPPRAFPKLFVS 261
Query: 168 CK-PKSSLD-YNFEDFQINSYNPQKSI 192
K P++ + + +EDF++ Y+P +I
Sbjct: 262 PKGPRTEPEHFQYEDFELVGYDPHPAI 288
>pdb|1CI7|A Chain A, Ternary Complex Of Thymidylate Synthase From Pneumocystis
Carinii
pdb|1CI7|B Chain B, Ternary Complex Of Thymidylate Synthase From Pneumocystis
Carinii
pdb|1F28|A Chain A, Crystal Structure Of Thymidylate Synthase From
Pneumocystis Carinii Bound To Dump And Bw1843u89
pdb|1F28|B Chain B, Crystal Structure Of Thymidylate Synthase From
Pneumocystis Carinii Bound To Dump And Bw1843u89
pdb|1F28|C Chain C, Crystal Structure Of Thymidylate Synthase From
Pneumocystis Carinii Bound To Dump And Bw1843u89
pdb|1F28|D Chain D, Crystal Structure Of Thymidylate Synthase From
Pneumocystis Carinii Bound To Dump And Bw1843u89
Length = 297
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 57/91 (62%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL +IAH L GDFI GDCH+Y +H++ ++QL R+P P L++
Sbjct: 207 VPFNIASYALLTCMIAHVCDLDPGDFIHVMGDCHIYKDHIEALQQQLTRSPRPFPTLSLN 266
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
D+ +DF I +Y+P ++I ++I
Sbjct: 267 RSITDIEDFTLDDFNIQNYHPYETIKMKMSI 297
>pdb|2H2Q|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydrofolate
Reductase- Thymidylate Synthase
pdb|2H2Q|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydrofolate
Reductase- Thymidylate Synthase
pdb|3CL9|A Chain A, Structure Of Bifunctional Tcdhfr-Ts In Complex With Mtx
pdb|3CLB|A Chain A, Structure Of Bifunctional Tcdhfr-Ts In Complex With Tmq
pdb|3CLB|B Chain B, Structure Of Bifunctional Tcdhfr-Ts In Complex With Tmq
pdb|3CLB|C Chain C, Structure Of Bifunctional Tcdhfr-Ts In Complex With Tmq
pdb|3CLB|D Chain D, Structure Of Bifunctional Tcdhfr-Ts In Complex With Tmq
pdb|3HBB|A Chain A, Structures Of Dihydrofolate Reductase-Thymidylate Synthase
Of Trypanosoma Cruzi In The Folate-Free State And In
Complex With Two Antifolate Drugs, Trimetrexate And
Methotrexate
pdb|3HBB|B Chain B, Structures Of Dihydrofolate Reductase-Thymidylate Synthase
Of Trypanosoma Cruzi In The Folate-Free State And In
Complex With Two Antifolate Drugs, Trimetrexate And
Methotrexate
pdb|3HBB|C Chain C, Structures Of Dihydrofolate Reductase-Thymidylate Synthase
Of Trypanosoma Cruzi In The Folate-Free State And In
Complex With Two Antifolate Drugs, Trimetrexate And
Methotrexate
pdb|3HBB|D Chain D, Structures Of Dihydrofolate Reductase-Thymidylate Synthase
Of Trypanosoma Cruzi In The Folate-Free State And In
Complex With Two Antifolate Drugs, Trimetrexate And
Methotrexate
pdb|3KJS|A Chain A, Crystal Structure Of T. Cruzi Dhfr-Ts With 3 High Affinity
D Inhibitors: Dq1 Inhibitor Complex
pdb|3KJS|B Chain B, Crystal Structure Of T. Cruzi Dhfr-Ts With 3 High Affinity
D Inhibitors: Dq1 Inhibitor Complex
pdb|3KJS|C Chain C, Crystal Structure Of T. Cruzi Dhfr-Ts With 3 High Affinity
D Inhibitors: Dq1 Inhibitor Complex
pdb|3KJS|D Chain D, Crystal Structure Of T. Cruzi Dhfr-Ts With 3 High Affinity
D Inhibitors: Dq1 Inhibitor Complex
Length = 521
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 52/91 (57%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL +IA TGL+ G+ + T GD H+Y NH++ +QL R P + P L
Sbjct: 431 VPFNIASYALLTILIAKATGLRPGELVHTLGDAHVYSNHVEPCNEQLKRVPRAFPYLVFR 490
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
+ + DY D ++ Y P I +A+
Sbjct: 491 REREFLEDYEEGDMEVIDYAPYPPISMKMAV 521
>pdb|3INV|A Chain A, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph, Dump And C-448 Antifolate
pdb|3INV|B Chain B, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph, Dump And C-448 Antifolate
pdb|3IRM|A Chain A, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Cycloguanil
pdb|3IRM|B Chain B, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Cycloguanil
pdb|3IRM|C Chain C, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Cycloguanil
pdb|3IRM|D Chain D, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Cycloguanil
pdb|3IRN|A Chain A, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Cycloguanil
pdb|3IRN|B Chain B, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Cycloguanil
pdb|3IRN|C Chain C, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Cycloguanil
pdb|3IRN|D Chain D, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Cycloguanil
pdb|3IRO|A Chain A, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Q-8 Antifolate
pdb|3IRO|B Chain B, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Q-8 Antifolate
pdb|3IRO|C Chain C, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Q-8 Antifolate
pdb|3IRO|D Chain D, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Q-8 Antifolate
Length = 521
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 52/91 (57%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL +IA TGL+ G+ + T GD H+Y NH++ +QL R P + P L
Sbjct: 431 VPFNIASYALLTILIAKATGLRPGELVHTLGDAHVYSNHVEPCNEQLKRVPRAFPYLVFR 490
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
+ + DY D ++ Y P I +A+
Sbjct: 491 REREFLEDYEEGDMEVIDYAPYPPISMKMAV 521
>pdb|1TIS|A Chain A, Crystal Structure Of Thymidylate Synthase From T4 Phage
Length = 286
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 56/103 (54%), Gaps = 12/103 (11%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
LPFNIASY+ L+HI+A L GD I++GG+ H+Y+NH++Q ++ L R P L L I
Sbjct: 184 LPFNIASYATLVHIVAKMCNLIPGDLIFSGGNTHIYMNHVEQCKEILRREPKELCELVIS 243
Query: 168 CKP--------KSSLDYNF----EDFQINSYNPQKSIYAPIAI 198
P K L Y +DF +N+Y I +A+
Sbjct: 244 GLPYKFRYLSTKEQLKYVLKLRPKDFVLNNYVSHPPIKGKMAV 286
>pdb|3DL6|A Chain A, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
pdb|3DL6|B Chain B, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
pdb|3DL6|C Chain C, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
pdb|3DL6|D Chain D, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
pdb|3DL6|E Chain E, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
Length = 521
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%)
Query: 109 PFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILC 168
PFNIASY++L ++A G + G+ GD H+Y NHL Q ++QL R P P L
Sbjct: 432 PFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKEQLSRTPRPFPQLKFKR 491
Query: 169 KPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
K ++ D+ +ED ++ Y P +I +A+
Sbjct: 492 KVENIEDFKWEDIELIGYYPYPTIKMDMAV 521
>pdb|3DL5|A Chain A, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|B Chain B, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|C Chain C, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|D Chain D, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|E Chain E, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
Length = 521
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%)
Query: 109 PFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILC 168
PFNIASY++L ++A G + G+ GD H+Y NHL Q ++QL R P P L
Sbjct: 432 PFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKEQLSRTPRPFPQLKFKR 491
Query: 169 KPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
K ++ D+ +ED ++ Y P +I +A+
Sbjct: 492 KVENIEDFKWEDIELIGYYPYPTIKMDMAV 521
>pdb|1QZF|A Chain A, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1QZF|B Chain B, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1QZF|C Chain C, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1QZF|D Chain D, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1QZF|E Chain E, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1SEJ|A Chain A, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
pdb|1SEJ|B Chain B, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
pdb|1SEJ|C Chain C, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
pdb|1SEJ|D Chain D, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
pdb|1SEJ|E Chain E, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
Length = 521
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%)
Query: 109 PFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILC 168
PFNIASY++L ++A G + G+ GD H+Y NHL Q ++QL R P P L
Sbjct: 432 PFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKEQLSRTPRPFPQLKFKR 491
Query: 169 KPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
K ++ D+ +ED ++ Y P +I +A+
Sbjct: 492 KVENIEDFKWEDIELIGYYPYPTIKMDMAV 521
>pdb|3HJ3|A Chain A, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site
Mut
pdb|3HJ3|B Chain B, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site
Mut
pdb|3HJ3|C Chain C, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site
Mut
pdb|3HJ3|D Chain D, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site
Mut
Length = 521
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%)
Query: 109 PFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILC 168
PFNIASY++L ++A G + G+ GD H+Y NHL Q ++QL R P P L
Sbjct: 432 PFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKEQLSRTPRPFPQLKFKR 491
Query: 169 KPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
K ++ D+ +ED ++ Y P +I +A+
Sbjct: 492 KVENIEDFKWEDIELIGYYPYPTIKMDMAV 521
>pdb|2OIP|A Chain A, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|2OIP|B Chain B, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|2OIP|C Chain C, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|2OIP|D Chain D, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|2OIP|E Chain E, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
Length = 519
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%)
Query: 109 PFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILC 168
PFNIASY++L ++A G + G+ GD H+Y NHL Q ++QL R P P L
Sbjct: 430 PFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKEQLSRTPRPFPQLKFKR 489
Query: 169 KPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
K ++ D+ +ED ++ Y P +I +A+
Sbjct: 490 KVENIEDFKWEDIELIGYYPYPTIKMDMAV 519
>pdb|1BKO|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKO|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKO|C Chain C, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKO|D Chain D, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKP|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKP|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSF|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSF|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSP|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSP|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
Length = 278
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 51/90 (56%)
Query: 109 PFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILC 168
PFN+ Y++L +IA TG ++G++I+ GDCH+Y H+D + Q+ R P L I
Sbjct: 189 PFNVFQYNVLQRMIAQVTGYELGEYIFNIGDCHVYTRHIDNLKIQMEREQFEAPELWINP 248
Query: 169 KPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
+ K D+ +DF++ +Y + +A+
Sbjct: 249 EVKDFYDFTIDDFKLINYKHGDKLLFEVAV 278
>pdb|1B02|A Chain A, Crystal Structure Of Thymidylate Synthase A From Bacillus
Subtilis
Length = 279
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 51/90 (56%)
Query: 109 PFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILC 168
PFN+ Y++L +IA TG ++G++I+ GDCH+Y H+D + Q+ R P L I
Sbjct: 190 PFNVFQYNVLQRMIAQVTGYELGEYIFNIGDCHVYTRHIDNLKIQMEREQFEAPELWINP 249
Query: 169 KPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
+ K D+ +DF++ +Y + +A+
Sbjct: 250 EVKDFYDFTIDDFKLINYKHGDKLLFEVAV 279
>pdb|3UM5|A Chain A, Double Mutant (A16v+s108t) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts-T994) COMPLEXED WITH Pyrimethamine, Nadph,
And Dump
pdb|3UM5|B Chain B, Double Mutant (A16v+s108t) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts-T994) COMPLEXED WITH Pyrimethamine, Nadph,
And Dump
pdb|3UM6|A Chain A, Double Mutant (A16v+s108t) Plasmodium Falciparum Dhfr-Ts
(T994) Complexed With Cycloguanil, Nadph And Dump
pdb|3UM6|B Chain B, Double Mutant (A16v+s108t) Plasmodium Falciparum Dhfr-Ts
(T994) Complexed With Cycloguanil, Nadph And Dump
Length = 608
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 48/90 (53%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASYS+ H+IA L+ FI G+ H+Y NH+D + QL R P P L +
Sbjct: 518 VPFNIASYSIFTHMIAQVCNLQPAQFIHVLGNAHVYNNHIDSLKIQLNRIPYPFPTLKLN 577
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIA 197
K+ D+ DF I +Y + I +A
Sbjct: 578 PDIKNIEDFTISDFTIQNYVHHEKISMDMA 607
>pdb|3QGT|A Chain A, Crystal Structure Of Wild-Type Pfdhfr-Ts Complexed With
Nadph, Dump And Pyrimethamine
pdb|3QGT|B Chain B, Crystal Structure Of Wild-Type Pfdhfr-Ts Complexed With
Nadph, Dump And Pyrimethamine
pdb|3UM8|A Chain A, Wild-Type Plasmodium Falciparum Dhfr-Ts Complexed With
Cycloguanil And Nadph
pdb|3UM8|B Chain B, Wild-Type Plasmodium Falciparum Dhfr-Ts Complexed With
Cycloguanil And Nadph
pdb|4DPD|A Chain A, Wild Type Plasmodium Falciparum Dihydrofolate
Reductase-Thymidylate Synthase (Pfdhfr-Ts), Dhf Complex,
Nadp+, Dump
pdb|4DPD|B Chain B, Wild Type Plasmodium Falciparum Dihydrofolate
Reductase-Thymidylate Synthase (Pfdhfr-Ts), Dhf Complex,
Nadp+, Dump
Length = 608
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 48/90 (53%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASYS+ H+IA L+ FI G+ H+Y NH+D + QL R P P L +
Sbjct: 518 VPFNIASYSIFTHMIAQVCNLQPAQFIHVLGNAHVYNNHIDSLKIQLNRIPYPFPTLKLN 577
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIA 197
K+ D+ DF I +Y + I +A
Sbjct: 578 PDIKNIEDFTISDFTIQNYVHHEKISMDMA 607
>pdb|3JSU|A Chain A, Quadruple Mutant(N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate
Synthase(Pfdhfr-Ts) Complexed With Qn254, Nadph, And
Dump
pdb|3JSU|B Chain B, Quadruple Mutant(N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate
Synthase(Pfdhfr-Ts) Complexed With Qn254, Nadph, And
Dump
pdb|3QG2|A Chain A, Plasmodium Falciparum Dhfr-Ts Qradruple Mutant
(N51i+c59r+s108n+i164l, V1S) PYRIMETHAMINE COMPLEX
pdb|3QG2|B Chain B, Plasmodium Falciparum Dhfr-Ts Qradruple Mutant
(N51i+c59r+s108n+i164l, V1S) PYRIMETHAMINE COMPLEX
pdb|4DP3|A Chain A, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P218 And Nadph
pdb|4DP3|B Chain B, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P218 And Nadph
pdb|4DPH|A Chain A, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P65 And Nadph
pdb|4DPH|B Chain B, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P65 And Nadph
Length = 608
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 48/90 (53%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASYS+ H+IA L+ FI G+ H+Y NH+D + QL R P P L +
Sbjct: 518 VPFNIASYSIFTHMIAQVCNLQPAQFIHVLGNAHVYNNHIDSLKIQLNRIPYPFPTLKLN 577
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIA 197
K+ D+ DF I +Y + I +A
Sbjct: 578 PDIKNIEDFTISDFTIQNYVHHEKISMDMA 607
>pdb|1J3I|C Chain C, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With Wr99210,
Nadph, And Dump
pdb|1J3I|D Chain D, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With Wr99210,
Nadph, And Dump
pdb|1J3J|C Chain C, Double Mutant (C59r+s108n) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase (Pfdhfr-Ts)
Complexed With Pyrimethamine, Nadph, And Dump
pdb|1J3J|D Chain D, Double Mutant (C59r+s108n) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase (Pfdhfr-Ts)
Complexed With Pyrimethamine, Nadph, And Dump
pdb|1J3K|C Chain C, Quadruple Mutant (n51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-thymidylate Synthase
(pfdhfr-ts) Complexed With Wr99210, Nadph, And Dump
pdb|1J3K|D Chain D, Quadruple Mutant (n51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-thymidylate Synthase
(pfdhfr-ts) Complexed With Wr99210, Nadph, And Dump
pdb|3DG8|C Chain C, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With Rjf670, Nadph, And Dump
pdb|3DG8|D Chain D, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With Rjf670, Nadph, And Dump
pdb|3DGA|C Chain C, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With
Rjf01302, Nadph, And Dump
pdb|3DGA|D Chain D, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With
Rjf01302, Nadph, And Dump
Length = 328
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 48/90 (53%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASYS+ H+IA L+ FI G+ H+Y NH+D + QL R P P L +
Sbjct: 238 VPFNIASYSIFTHMIAQVCNLQPAQFIHVLGNAHVYNNHIDSLKIQLNRIPYPFPTLKLN 297
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIA 197
K+ D+ DF I +Y + I +A
Sbjct: 298 PDIKNIEDFTISDFTIQNYVHHEKISMDMA 327
>pdb|3I3R|A Chain A, X-Ray Structure Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis At 2.35a Resolution
pdb|3I3R|B Chain B, X-Ray Structure Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis At 2.35a Resolution
pdb|3K2H|A Chain A, Co-Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE From Babesia Bovis With Dump, Pemetrexed And
Nadp
pdb|3K2H|B Chain B, Co-Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE From Babesia Bovis With Dump, Pemetrexed And
Nadp
pdb|3KJR|A Chain A, Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis Determined Using Slipchip
Based Microfluidics
pdb|3KJR|B Chain B, Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis Determined Using Slipchip
Based Microfluidics
Length = 511
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASYS+L ++A GL +G+F+ D H+Y++H+D Q+ R P P L +
Sbjct: 421 VPFNIASYSILTAMVAQVCGLGLGEFVHNLADAHIYVDHVDAVTTQIARIPHPFPRLRLN 480
Query: 168 CKPKSSLDYNFEDFQINSY 186
++ D+ +D + Y
Sbjct: 481 PDIRNIEDFTIDDIVVEDY 499
>pdb|3NRR|A Chain A, Co-Crystal Structure Of Dihydrofolate
Reductase-Thymidylate Synthase From Babesia Bovis With
Dump, Raltitrexed And Nadp
pdb|3NRR|B Chain B, Co-Crystal Structure Of Dihydrofolate
Reductase-Thymidylate Synthase From Babesia Bovis With
Dump, Raltitrexed And Nadp
Length = 515
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASYS+L ++A GL +G+F+ D H+Y++H+D Q+ R P P L +
Sbjct: 425 VPFNIASYSILTAMVAQVCGLGLGEFVHNLADAHIYVDHVDAVTTQIARIPHPFPRLRLN 484
Query: 168 CKPKSSLDYNFEDFQINSY 186
++ D+ +D + Y
Sbjct: 485 PDIRNIEDFTIDDIVVEDY 503
>pdb|2AAZ|A Chain A, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|B Chain B, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|C Chain C, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|D Chain D, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|E Chain E, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|F Chain F, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|G Chain G, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|H Chain H, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|I Chain I, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|J Chain J, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|K Chain K, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|L Chain L, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|M Chain M, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|N Chain N, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|O Chain O, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|P Chain P, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
Length = 317
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL H+IA T + +FI GD H+Y +H++ + QL R P P L
Sbjct: 224 VPFNIASYALLTHMIALITDTEPHEFILQMGDAHVYRDHVEPLKTQLEREPRDFPKLKWA 283
Query: 168 CKPKSSLD---YNFEDFQINSYNP 188
+ D + EDF + Y P
Sbjct: 284 RSKEEIGDIDGFKVEDFVVEGYKP 307
>pdb|3V8H|A Chain A, Crystal Structure Of Thymidylate Synthase From
Burkholderia Thailandensis
pdb|3V8H|B Chain B, Crystal Structure Of Thymidylate Synthase From
Burkholderia Thailandensis
pdb|3V8H|C Chain C, Crystal Structure Of Thymidylate Synthase From
Burkholderia Thailandensis
pdb|3V8H|D Chain D, Crystal Structure Of Thymidylate Synthase From
Burkholderia Thailandensis
Length = 327
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 11/101 (10%)
Query: 109 PFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILC 168
PFN+A + L+ ++ TG F + GD H+Y N LD ++QL R P P L +
Sbjct: 227 PFNLAEGAALLTLVGRLTGYSPRWFTYFIGDAHIYENQLDMLKQQLEREPFESPRLELAE 286
Query: 169 K-PKSSLDYNFE----------DFQINSYNPQKSIYAPIAI 198
+ P + +E DF + Y + + AP+A+
Sbjct: 287 RVPDYAKTGKYEPQWLERVEPSDFTLVGYRHHEPLSAPMAV 327
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.456
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,008,844
Number of Sequences: 62578
Number of extensions: 173240
Number of successful extensions: 593
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 492
Number of HSP's gapped (non-prelim): 98
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)