Query psy2410
Match_columns 198
No_of_seqs 244 out of 2012
Neff 7.3
Searched_HMMs 46136
Date Sat Aug 17 00:17:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2410.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2410hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1280 RhtB Putative threonin 100.0 1.2E-30 2.6E-35 213.8 16.9 164 1-165 1-189 (208)
2 PRK10520 rhtB homoserine/homos 100.0 3.9E-29 8.5E-34 203.9 16.6 164 1-165 1-186 (205)
3 PRK10323 cysteine/O-acetylseri 100.0 1.6E-28 3.5E-33 199.2 18.7 156 1-156 1-173 (195)
4 PRK10958 leucine export protei 100.0 5.2E-28 1.1E-32 198.6 16.5 164 1-164 5-192 (212)
5 PRK10229 threonine efflux syst 99.9 4.3E-25 9.2E-30 180.1 14.4 124 4-127 3-141 (206)
6 PRK09304 arginine exporter pro 99.9 2.3E-24 5.1E-29 176.3 16.0 159 4-165 3-184 (207)
7 TIGR00948 2a75 L-lysine export 99.9 5.8E-24 1.3E-28 169.7 13.4 146 17-165 2-170 (177)
8 TIGR00949 2A76 The Resistance 99.9 1.1E-23 2.3E-28 168.8 13.3 144 19-163 1-169 (185)
9 PF01810 LysE: LysE type trans 99.9 2.4E-22 5.3E-27 161.5 15.3 142 15-156 2-166 (191)
10 KOG0673|consensus 99.8 1E-19 2.3E-24 148.3 5.5 95 104-198 199-293 (293)
11 TIGR03284 thym_sym thymidylate 99.8 3.9E-20 8.4E-25 157.5 0.3 96 103-198 201-296 (296)
12 PRK01827 thyA thymidylate synt 99.8 9.1E-20 2E-24 153.8 0.6 96 103-198 169-264 (264)
13 COG0207 ThyA Thymidylate synth 99.8 2E-19 4.3E-24 150.2 2.0 96 103-198 173-268 (268)
14 PRK13821 thyA thymidylate synt 99.7 3.1E-19 6.8E-24 153.3 1.0 96 103-198 217-323 (323)
15 PTZ00164 bifunctional dihydrof 99.7 7.4E-18 1.6E-22 153.8 2.9 96 103-198 419-514 (514)
16 COG1279 Lysine efflux permease 99.6 1.2E-13 2.6E-18 111.3 13.9 160 3-165 2-184 (202)
17 PF00303 Thymidylat_synt: Thym 99.5 1.7E-16 3.6E-21 134.9 -6.7 96 103-198 174-269 (269)
18 PF11139 DUF2910: Protein of u 97.5 0.01 2.2E-07 48.6 15.8 83 11-93 3-90 (214)
19 TIGR03717 R_switched_YjbE inte 96.8 0.17 3.7E-06 40.5 15.6 71 18-95 10-84 (176)
20 PRK10995 inner membrane protei 95.8 0.58 1.3E-05 38.7 14.2 40 54-93 55-95 (221)
21 TIGR03716 R_switched_YkoY inte 94.9 0.35 7.7E-06 40.0 10.0 67 21-94 8-78 (215)
22 PF03741 TerC: Integral membra 94.1 0.6 1.3E-05 37.5 9.4 68 21-94 11-82 (183)
23 TIGR03718 R_switched_Alx integ 93.2 1.1 2.4E-05 38.9 10.1 72 18-95 73-150 (302)
24 PF02417 Chromate_transp: Chro 91.8 5.2 0.00011 31.4 11.9 81 12-92 46-131 (169)
25 TIGR00427 membrane protein, Ma 85.8 18 0.00038 29.5 11.2 39 55-93 56-94 (201)
26 TIGR00937 2A51 chromate transp 82.5 25 0.00053 31.4 11.3 83 12-94 38-125 (368)
27 COG1280 RhtB Putative threonin 81.5 22 0.00048 28.8 10.0 102 26-127 30-144 (208)
28 TIGR00937 2A51 chromate transp 80.4 36 0.00079 30.3 11.7 85 9-93 244-332 (368)
29 PF14159 CAAD: CAAD domains of 79.1 11 0.00025 26.7 6.5 33 61-93 39-71 (90)
30 PRK11111 hypothetical protein; 78.8 28 0.00061 28.6 9.7 23 71-93 75-97 (214)
31 PF03596 Cad: Cadmium resistan 78.1 35 0.00076 27.7 10.4 53 38-94 24-78 (191)
32 PF01914 MarC: MarC family int 73.6 37 0.0008 27.6 9.0 27 69-95 67-93 (203)
33 PLN02777 photosystem I P subun 71.1 11 0.00023 29.9 5.0 33 61-93 114-146 (167)
34 PRK00956 thyA thymidylate synt 70.7 0.44 9.6E-06 39.1 -2.9 53 103-155 155-207 (208)
35 COG4280 Predicted membrane pro 70.1 20 0.00044 29.5 6.6 84 1-93 1-85 (236)
36 PRK10323 cysteine/O-acetylseri 67.7 61 0.0013 25.8 9.9 98 27-124 31-134 (195)
37 COG2059 ChrA Chromate transpor 67.1 68 0.0015 26.1 11.3 82 13-94 52-138 (195)
38 COG0861 TerC Membrane protein 65.2 85 0.0019 26.6 10.0 79 10-95 20-103 (254)
39 COG0785 CcdA Cytochrome c biog 62.0 90 0.002 25.8 9.7 84 7-90 14-103 (220)
40 PRK00293 dipZ thiol:disulfide 61.5 1.4E+02 0.003 28.2 11.4 81 5-90 168-262 (571)
41 COG1279 Lysine efflux permease 59.7 78 0.0017 26.0 8.2 64 29-92 135-201 (202)
42 COG2095 MarC Multiple antibiot 57.2 1.1E+02 0.0023 25.1 10.9 43 52-94 53-95 (203)
43 TIGR03717 R_switched_YjbE inte 56.8 64 0.0014 25.7 7.2 23 69-91 152-174 (176)
44 PF02683 DsbD: Cytochrome C bi 56.0 1.1E+02 0.0023 24.6 8.8 52 40-91 41-93 (211)
45 PRK11469 hypothetical protein; 54.0 1.1E+02 0.0025 24.5 9.9 21 73-93 68-88 (188)
46 PF03741 TerC: Integral membra 51.5 86 0.0019 25.1 7.2 22 69-90 160-181 (183)
47 PRK10520 rhtB homoserine/homos 51.3 1.2E+02 0.0027 24.0 8.5 98 27-124 31-139 (205)
48 PRK10958 leucine export protei 48.0 1.5E+02 0.0032 24.0 9.0 98 27-124 35-144 (212)
49 cd00351 TS_Pyrimidine_HMase Th 47.4 1 2.2E-05 37.1 -4.7 48 103-150 167-214 (215)
50 TIGR03716 R_switched_YkoY inte 47.1 1.1E+02 0.0023 25.3 7.2 25 69-93 150-174 (215)
51 KOG3438|consensus 47.0 12 0.00026 27.3 1.4 13 179-191 41-54 (105)
52 COG4956 Integral membrane prot 43.6 86 0.0019 27.6 6.3 54 39-92 77-132 (356)
53 PRK10019 nickel/cobalt efflux 43.0 2.2E+02 0.0047 24.5 10.8 79 11-89 182-269 (279)
54 PF09656 PGPGW: Putative trans 42.9 30 0.00066 22.1 2.7 19 9-27 11-29 (53)
55 PRK10739 putative antibiotic t 39.7 2E+02 0.0044 23.2 10.1 24 70-93 68-91 (197)
56 TIGR02840 spore_YtaF putative 34.2 2.5E+02 0.0055 22.7 8.9 21 73-93 62-82 (206)
57 PRK09509 fieF ferrous iron eff 34.0 2.9E+02 0.0064 23.4 10.5 47 48-94 155-202 (299)
58 PF05661 DUF808: Protein of un 33.3 1.3E+02 0.0029 26.1 5.8 25 67-91 83-107 (295)
59 PF01810 LysE: LysE type trans 32.8 2.3E+02 0.0051 21.9 9.9 57 35-92 131-190 (191)
60 PF15654 Tox-WTIP: Toxin with 31.4 21 0.00045 22.9 0.5 23 70-92 16-38 (54)
61 PF14851 FAM176: FAM176 family 29.6 79 0.0017 24.8 3.6 25 34-58 18-42 (153)
62 PF03487 IL13: Interleukin-13; 28.4 19 0.00042 21.7 0.0 17 8-24 8-24 (43)
63 COG0053 MMT1 Predicted Co/Zn/C 28.0 3.9E+02 0.0085 23.0 9.4 58 38-95 147-205 (304)
64 PRK10062 hypothetical protein; 27.4 3.2E+02 0.0069 23.8 7.2 25 67-91 83-107 (303)
65 COG2215 ABC-type uncharacteriz 27.3 4.2E+02 0.0092 23.1 11.4 83 9-93 204-300 (303)
66 TIGR00802 nico high-affinity n 25.3 1E+02 0.0022 26.6 3.8 51 37-87 37-92 (280)
67 PF11351 DUF3154: Protein of u 24.1 3.1E+02 0.0066 20.4 6.1 20 72-91 98-117 (123)
68 PF01169 UPF0016: Uncharacteri 23.5 2.5E+02 0.0054 19.1 7.2 56 25-83 19-75 (78)
69 TIGR02611 conserved hypothetic 22.9 95 0.0021 23.4 2.8 19 9-27 35-53 (121)
70 KOG3360|consensus 22.9 92 0.002 22.5 2.6 36 147-183 59-97 (98)
71 COG5521 Predicted integral mem 22.5 4.9E+02 0.011 22.2 7.4 75 17-93 193-267 (275)
72 PF06789 UPF0258: Uncharacteri 22.2 27 0.00059 27.3 -0.2 13 177-189 100-115 (159)
73 PRK03557 zinc transporter ZitB 21.8 5.1E+02 0.011 22.2 8.1 54 40-93 153-208 (312)
74 PRK02983 lysS lysyl-tRNA synth 21.7 3E+02 0.0064 28.4 6.9 32 24-55 62-93 (1094)
75 COG0861 TerC Membrane protein 21.3 4.1E+02 0.009 22.5 6.8 24 70-93 189-212 (254)
76 PF06442 DHFR_2: R67 dihydrofo 21.0 47 0.001 22.3 0.8 25 173-197 47-72 (78)
77 PRK10019 nickel/cobalt efflux 20.1 5.7E+02 0.012 22.0 12.4 79 12-90 23-106 (279)
78 PF02411 MerT: MerT mercuric t 20.1 3.7E+02 0.0081 19.9 8.2 56 38-93 13-73 (116)
No 1
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=99.97 E-value=1.2e-30 Score=213.78 Aligned_cols=164 Identities=20% Similarity=0.327 Sum_probs=138.8
Q ss_pred CCHHHHHHHHHHHHHhhccCchHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHH
Q psy2410 1 MIFKTWISFLLFSIITSISPGPGNILTINHALRYGWRKTLSLIIGQEIALVLIILAISEGAELLL-SSSSILIFIKIFGI 79 (198)
Q Consensus 1 M~~~~~~~~~~~~~~~~~~PGP~~~~v~~~~~~~G~r~~~~~~~G~~~g~~~~~~~~~~Gl~~l~-~~~~~~~~l~~~G~ 79 (198)
|+++.+++|+.++++..++|||++++++++++++|+|+|+.+++|+.+|+.+|++++++|++.++ .+|.+++++|++|+
T Consensus 1 m~~~~~l~~~~~~~~~~~~PGP~~~~v~~~~~~~G~~~g~~~~~G~~~G~~v~~~l~~~Gl~all~~~~~~f~~lk~~Ga 80 (208)
T COG1280 1 MMLTNLLAFLLAALVLAATPGPDNLLVLARSLSRGRRAGLATALGIALGDLVHMLLAALGLAALLATSPALFTVLKLAGA 80 (208)
T ss_pred CCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999988 79999999999999
Q ss_pred HHHHHHHHHHHhhccCc---C-----Cc----chhhhhhccchhHHHHHHHHHHHhhhcCchHH----HH--------HH
Q psy2410 80 IWLMYTSFQMWCASINK---K-----DS----TYICETIRLPFNIASYSLLIHIIAHETGLKVG----DF--------IW 135 (198)
Q Consensus 80 ~yL~ylg~~~~r~~~~~---~-----~~----~~~~~~l~n~~Npk~~~~~~~~~~~~~~~~~~----~~--------v~ 135 (198)
+||+|+|+|++|++.+. + +. .|+++++.|..|||.++|+.+++||+.+...+ ++ +.
T Consensus 81 aYL~ylg~~~~ra~~~~~~~~~~~~~~~~~~~~f~~G~~~~l~NPK~~lf~la~~pqfv~~~~~~~~~~~~~l~~~~~~~ 160 (208)
T COG1280 81 AYLLYLGWKALRAGGAALAEEAAGAPSSSRRKAFRRGLLVNLLNPKAILFFLAFLPQFVDPGAGLVLLQALILGLVFILV 160 (208)
T ss_pred HHHHHHHHHHHhcccccccccccccccchhHHHHHHHHHHHhhCcHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHH
Confidence 99999999999986431 1 11 38999999999999888887777777543331 11 12
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCeee
Q psy2410 136 TGGDCHLYLNHLDQARKQLLRNPGSLPNLT 165 (198)
Q Consensus 136 ~~~~~~vya~~~~~lr~~L~r~p~~~~~l~ 165 (198)
.+.+...|....++.++++++ |+..++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~ 189 (208)
T COG1280 161 GFVVLALYALLAARLRRLLRR-PRASRIIN 189 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-hHHHHHHH
Confidence 444556778888888998876 88776655
No 2
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=99.96 E-value=3.9e-29 Score=203.87 Aligned_cols=164 Identities=21% Similarity=0.292 Sum_probs=134.5
Q ss_pred CCHHHHHHHHHHHHHhhccCchHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHH
Q psy2410 1 MIFKTWISFLLFSIITSISPGPGNILTINHALRYGWRKTLSLIIGQEIALVLIILAISEGAELLL-SSSSILIFIKIFGI 79 (198)
Q Consensus 1 M~~~~~~~~~~~~~~~~~~PGP~~~~v~~~~~~~G~r~~~~~~~G~~~g~~~~~~~~~~Gl~~l~-~~~~~~~~l~~~G~ 79 (198)
|++++++.|+.++++..++|||++++++++++++|+|+++.+++|+.+|+.+|++++++|++.++ ++|.++.++|++|+
T Consensus 1 m~~~~~~~~~~~~~~~~~sPGP~~~~v~~~~~~~G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~~Ga 80 (205)
T PRK10520 1 MTLEWWLAYLLTSIILSLSPGSGAINTMSTSISHGYRGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWAGA 80 (205)
T ss_pred CCHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999988 78999999999999
Q ss_pred HHHHHHHHHHHhhccCc-----C-C----cchhhhhhccchhHHHHHHHHHHHhhhcCchH---HH-HH-------HHHH
Q psy2410 80 IWLMYTSFQMWCASINK-----K-D----STYICETIRLPFNIASYSLLIHIIAHETGLKV---GD-FI-------WTGG 138 (198)
Q Consensus 80 ~yL~ylg~~~~r~~~~~-----~-~----~~~~~~~l~n~~Npk~~~~~~~~~~~~~~~~~---~~-~v-------~~~~ 138 (198)
+||+|+|+|+||++.+. + + +.|+++++.|..|||.++|+.++++++.+.+. .+ +. ....
T Consensus 81 ~YL~~lg~~~~~s~~~~~~~~~~~~~~~~~~f~~g~~~~l~NPKailf~~a~~p~f~~~~~~~~~~~~~l~~~~~~~~~~ 160 (205)
T PRK10520 81 AYLIWLGIQQWRAAGAIDLHTLASTQSRRRLFKRAVFVNLTNPKSIVFLAALFPQFIMPQQPQLMQYLVLGVTTVVVDII 160 (205)
T ss_pred HHHHHHHHHHHhCCCccccccccCCccHHHHHHHHHHHHhhCcHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999975211 1 1 23789999999999999999988888754321 11 11 2233
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCeee
Q psy2410 139 DCHLYLNHLDQARKQLLRNPGSLPNLT 165 (198)
Q Consensus 139 ~~~vya~~~~~lr~~L~r~p~~~~~l~ 165 (198)
+...|+..+.+.++.++ +||..+++|
T Consensus 161 ~~~~~a~~~~~~~~~~~-~~~~~~~i~ 186 (205)
T PRK10520 161 VMIGYATLAQRIARWIK-GPKQMKALN 186 (205)
T ss_pred HHHHHHHHHHHHHHHHc-CcHHHHHHH
Confidence 44567777777777664 555555443
No 3
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=99.96 E-value=1.6e-28 Score=199.19 Aligned_cols=156 Identities=12% Similarity=0.181 Sum_probs=131.4
Q ss_pred CCHHHHHHHHHHHHHhhccCchHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHH
Q psy2410 1 MIFKTWISFLLFSIITSISPGPGNILTINHALRYGWRKTLSLIIGQEIALVLIILAISEGAELLL-SSSSILIFIKIFGI 79 (198)
Q Consensus 1 M~~~~~~~~~~~~~~~~~~PGP~~~~v~~~~~~~G~r~~~~~~~G~~~g~~~~~~~~~~Gl~~l~-~~~~~~~~l~~~G~ 79 (198)
|+.+.+++|+.++++..++|||+|++++++++++|+|++++.++|+.+|+.++++++..|++.+. ++|+++.++|++|+
T Consensus 1 ~~~~~~~~f~~~~~~~~~sPGP~~~~v~~~~~~~G~r~a~~~~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~Ga 80 (195)
T PRK10323 1 MTPTLLSAFWTYTLITAMTPGPNNILALSSATSHGFRQSTRVLAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGA 80 (195)
T ss_pred CCHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999998877 78999999999999
Q ss_pred HHHHHHHHHHHhhccCc---CC--cchhhhhhccchhHHHHHHHHHHHhhhcCchH---H-HHH-------HHHHHHHHH
Q psy2410 80 IWLMYTSFQMWCASINK---KD--STYICETIRLPFNIASYSLLIHIIAHETGLKV---G-DFI-------WTGGDCHLY 143 (198)
Q Consensus 80 ~yL~ylg~~~~r~~~~~---~~--~~~~~~~l~n~~Npk~~~~~~~~~~~~~~~~~---~-~~v-------~~~~~~~vy 143 (198)
+||+|+|+|+||++.++ ++ ..|+++++.|..|||.++++.++++++.+++. . .++ ....+...|
T Consensus 81 ~YLlyLg~~~~~s~~~~~~~~~~~~~f~~G~~~~l~NPKa~lf~~a~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 160 (195)
T PRK10323 81 AYIVWLAWKIATSPTKEDGLQAKPISFWASFALQFVNVKIILYGITALSTFVLPQTQALSWVVGVSVLLAMIGTFGNVCW 160 (195)
T ss_pred HHHHHHHHHHHhccCccccCCCCChhHHHHHHHHhHCHHHHHHHHHHHHHhhCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999975422 11 25899999999999999888888888765421 1 111 122334578
Q ss_pred HHHHHHHHHHHhc
Q psy2410 144 LNHLDQARKQLLR 156 (198)
Q Consensus 144 a~~~~~lr~~L~r 156 (198)
+..+.++++.++|
T Consensus 161 ~~~~~~~~~~~~~ 173 (195)
T PRK10323 161 ALAGHLFQRLFRQ 173 (195)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887764
No 4
>PRK10958 leucine export protein LeuE; Provisional
Probab=99.96 E-value=5.2e-28 Score=198.62 Aligned_cols=164 Identities=15% Similarity=0.194 Sum_probs=134.7
Q ss_pred CCHHHHHHHHHHHHHhhccCchHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHH
Q psy2410 1 MIFKTWISFLLFSIITSISPGPGNILTINHALRYGWRKTLSLIIGQEIALVLIILAISEGAELLL-SSSSILIFIKIFGI 79 (198)
Q Consensus 1 M~~~~~~~~~~~~~~~~~~PGP~~~~v~~~~~~~G~r~~~~~~~G~~~g~~~~~~~~~~Gl~~l~-~~~~~~~~l~~~G~ 79 (198)
|+++++++|+.+++...++|||+|++++++++++|+|+++..++|+.+|+.++++++++|++.+. .+|+++.++|++|+
T Consensus 5 ~~~~~~l~f~~~~~~~~~sPGP~~~~v~~~~~~~G~r~~~~~~~G~~~g~~~~~~~~~~G~~~l~~~~p~~~~~l~~~G~ 84 (212)
T PRK10958 5 FGVTDLWTYLVGAIFIVLLPGPNSLYVLSTAARRGVKAGYRAACGVFIGDAVLMFLAAAGVASLLKATPLLFNVVKYLGA 84 (212)
T ss_pred CCHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999988 78999999999999
Q ss_pred HHHHHHHHHHHhhccC----c-C--C----cchhhhhhccchhHHHHHHHHHHHhhhcCch----HHHH-H-------HH
Q psy2410 80 IWLMYTSFQMWCASIN----K-K--D----STYICETIRLPFNIASYSLLIHIIAHETGLK----VGDF-I-------WT 136 (198)
Q Consensus 80 ~yL~ylg~~~~r~~~~----~-~--~----~~~~~~~l~n~~Npk~~~~~~~~~~~~~~~~----~~~~-v-------~~ 136 (198)
+||+|+|+|+||++.+ + + + +.|+++++.|..|||.+.++.++++|+.+.+ ..+. . ..
T Consensus 85 ~yL~~la~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~l~NPKa~lf~~a~~~~fi~~~~~~~~~~~~~l~~~~~~~~ 164 (212)
T PRK10958 85 AYLLYLGVKMLRAALRRWRRRAASAAPPYGAPFRRALILSLTNPKAILFFVSFFVQFVDPNYAHPALSFLILATILQLVS 164 (212)
T ss_pred HHHHHHHHHHHHhhcccccccccccCcchhHHHHHHHHHHhhChHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHH
Confidence 9999999999997521 1 1 1 2378999999999999998888888775432 1111 1 23
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCee
Q psy2410 137 GGDCHLYLNHLDQARKQLLRNPGSLPNL 164 (198)
Q Consensus 137 ~~~~~vya~~~~~lr~~L~r~p~~~~~l 164 (198)
..+...|...+.+++++++++++..+++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i 192 (212)
T PRK10958 165 FCYLSFLIFSGARLAAYFRRRKKLAAGG 192 (212)
T ss_pred HHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 3444567777888888777665444443
No 5
>PRK10229 threonine efflux system; Provisional
Probab=99.93 E-value=4.3e-25 Score=180.09 Aligned_cols=124 Identities=14% Similarity=0.251 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHhhccCchHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHH
Q psy2410 4 KTWISFLLFSIITSISPGPGNILTINHALRYGWRKTLSLIIGQEIALVLIILAISEGAELLL-SSSSILIFIKIFGIIWL 82 (198)
Q Consensus 4 ~~~~~~~~~~~~~~~~PGP~~~~v~~~~~~~G~r~~~~~~~G~~~g~~~~~~~~~~Gl~~l~-~~~~~~~~l~~~G~~yL 82 (198)
+.++.++.++++..++|||+|++++++++++|+|+++..++|++.|+.+++.++++|++.++ .+|.++.++|++|++||
T Consensus 3 ~~~~~~~~~~~~~~~sPGP~~~~vi~~~~~~G~~~~~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~~Ga~yL 82 (206)
T PRK10229 3 MLFLTVAMVHIVALMSPGPDFFFVSQTAVSRSRKEAMMGVLGITCGVMVWAGVALLGLHLILEKMAWLHTIIMVGGGLYL 82 (206)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999988 78999999999999999
Q ss_pred HHHHHHHHhhccC----c--C---C-----cchhhhhhccchhHHHHHHHHHHHhhhcC
Q psy2410 83 MYTSFQMWCASIN----K--K---D-----STYICETIRLPFNIASYSLLIHIIAHETG 127 (198)
Q Consensus 83 ~ylg~~~~r~~~~----~--~---~-----~~~~~~~l~n~~Npk~~~~~~~~~~~~~~ 127 (198)
+|+|+++||++.+ . + + +.|+++++.|..|||.+.|+.++++++.+
T Consensus 83 lylg~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~G~l~~l~NPka~lf~~ai~~~f~~ 141 (206)
T PRK10229 83 CWMGYQMLRGALKKEDVAAEEPQVELAKSGRSFLKGLLTNLSNPKAIIYFGSVFSLFVG 141 (206)
T ss_pred HHHHHHHHHhcccccccccccccccCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Confidence 9999999996521 1 0 1 12788999999999999888888887744
No 6
>PRK09304 arginine exporter protein; Provisional
Probab=99.92 E-value=2.3e-24 Score=176.25 Aligned_cols=159 Identities=13% Similarity=0.052 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHhhccCchHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHH
Q psy2410 4 KTWISFLLFSIITSISPGPGNILTINHALRYGWRKTLSLIIGQEIALVLIILAISEGAELLL-SSSSILIFIKIFGIIWL 82 (198)
Q Consensus 4 ~~~~~~~~~~~~~~~~PGP~~~~v~~~~~~~G~r~~~~~~~G~~~g~~~~~~~~~~Gl~~l~-~~~~~~~~l~~~G~~yL 82 (198)
..++..+..++.+.++|||+|++++++++++ |.++..++|+.+||.++.+++++|++.++ ++|+++.++|++|++||
T Consensus 3 ~~~~~g~~~g~~~~~tPGP~~~~v~~~~~~~--~~~~~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l~~~Ga~YL 80 (207)
T PRK09304 3 SYYFQGFALGAAMILPLGPQNAFVMNQGIRR--QYHLMIALLCALSDLVLICAGIFGGSALLMQSPWLLALVTWGGVAFL 80 (207)
T ss_pred HHHHHHHHHHHHHHhccChHHHHHHHHHHcc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788999999999999999999999985 67999999999999999999999999988 79999999999999999
Q ss_pred HHHHHHHHhhccC--c-----C---C---cchhhhhhccchhHHHHHH----HHHHHhhhcCchHH-----HHHHHHHHH
Q psy2410 83 MYTSFQMWCASIN--K-----K---D---STYICETIRLPFNIASYSL----LIHIIAHETGLKVG-----DFIWTGGDC 140 (198)
Q Consensus 83 ~ylg~~~~r~~~~--~-----~---~---~~~~~~~l~n~~Npk~~~~----~~~~~~~~~~~~~~-----~~v~~~~~~ 140 (198)
+|+|||+||++.+ . + + +.|+++++.|..|||.+++ ++++++++.+.... .+...+.+.
T Consensus 81 lyLg~~~~rs~~~~~~~~~~~~~~~~~~~~~f~~G~~~~l~NPKa~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (207)
T PRK09304 81 LWYGFGAFKTAMSSNIELASAEVMKQGRWKIIATMLAVTWLNPHVYLDTFVVLGSLGGQLDVEPKRWFALGTISASFLWF 160 (207)
T ss_pred HHHHHHHHHHhcccccccccccccCccHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH
Confidence 9999999997521 1 1 1 1378899999999998875 55555655321111 111344556
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCeee
Q psy2410 141 HLYLNHLDQARKQLLRNPGSLPNLT 165 (198)
Q Consensus 141 ~vya~~~~~lr~~L~r~p~~~~~l~ 165 (198)
..|+..+.++|++++ +||..+++|
T Consensus 161 ~~~a~~~~~~~~~~~-~~~~~~~in 184 (207)
T PRK09304 161 FGLALLAAWLAPRLR-TAKAQRIIN 184 (207)
T ss_pred HHHHHHHHHHHHHhc-CchHHHHHH
Confidence 688888888887775 566665544
No 7
>TIGR00948 2a75 L-lysine exporter.
Probab=99.91 E-value=5.8e-24 Score=169.69 Aligned_cols=146 Identities=14% Similarity=0.061 Sum_probs=112.1
Q ss_pred hccCchHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy2410 17 SISPGPGNILTINHALRYGWRKTLSLIIGQEIALVLIILAISEGAELLL-SSSSILIFIKIFGIIWLMYTSFQMWCASIN 95 (198)
Q Consensus 17 ~~~PGP~~~~v~~~~~~~G~r~~~~~~~G~~~g~~~~~~~~~~Gl~~l~-~~~~~~~~l~~~G~~yL~ylg~~~~r~~~~ 95 (198)
+++|||++++++++++++ |+++.+++|+.+||.+|++++.+|++.++ ++|.++..+|++|++||+|+|+|+||++.+
T Consensus 2 ~~~pGP~~~~vi~~~~~~--~~g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~~~~ 79 (177)
T TIGR00948 2 ILPIGAQNAFVLRQGIRR--EHVLLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKTAWR 79 (177)
T ss_pred eeeecchHHHHHHHHHcc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 679999999999999996 45999999999999999999999999988 799999999999999999999999997522
Q ss_pred ---c-----CC-----cchhhhhhccchhHHHHH----HHHHHHhhhcCchHHH-----HHHHHHHHHHHHHHHHHHHHH
Q psy2410 96 ---K-----KD-----STYICETIRLPFNIASYS----LLIHIIAHETGLKVGD-----FIWTGGDCHLYLNHLDQARKQ 153 (198)
Q Consensus 96 ---~-----~~-----~~~~~~~l~n~~Npk~~~----~~~~~~~~~~~~~~~~-----~v~~~~~~~vya~~~~~lr~~ 153 (198)
+ ++ +.|+++++.|..|||.++ +++++++++....... +...+.+...|+..+++.|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~f~~G~~~~l~NPKa~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 159 (177)
T TIGR00948 80 GPGALVPDEPKKMGLKKVLAMTLAVTLLNPHVYLDTVVLIGALGLQFSDLLRWLFAAGAIAASLVWFASLAFGAARLSPL 159 (177)
T ss_pred cccccccccccccCHHHHHHHHHHHHHhCchHHHHHHHHHHhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11 126789999999999887 5566666543222211 112344555677788888776
Q ss_pred HhcCCCCCCeee
Q psy2410 154 LLRNPGSLPNLT 165 (198)
Q Consensus 154 L~r~p~~~~~l~ 165 (198)
++ +||..+++|
T Consensus 160 ~~-~~~~~~~i~ 170 (177)
T TIGR00948 160 LA-SPKVWRIIN 170 (177)
T ss_pred hc-CccHHHHHH
Confidence 64 555554443
No 8
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=99.91 E-value=1.1e-23 Score=168.84 Aligned_cols=144 Identities=16% Similarity=0.147 Sum_probs=112.1
Q ss_pred cCchHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHhhccC--
Q psy2410 19 SPGPGNILTINHALRYGWRKTLSLIIGQEIALVLIILAISEGAELLL-SSSSILIFIKIFGIIWLMYTSFQMWCASIN-- 95 (198)
Q Consensus 19 ~PGP~~~~v~~~~~~~G~r~~~~~~~G~~~g~~~~~~~~~~Gl~~l~-~~~~~~~~l~~~G~~yL~ylg~~~~r~~~~-- 95 (198)
+|||+|++++++++++|+|++++.++|+.+||.++++++++|++.++ .+|.++.++|++|++||+|+|+++||++.+
T Consensus 1 tPGP~~~~~~~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~~~~~~~ 80 (185)
T TIGR00949 1 SPGPNFFVVMQTSLSSGRRAGVLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLRKKSKKQ 80 (185)
T ss_pred CCCcchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 79999999999999999999999999999999999999999999988 789999999999999999999999995311
Q ss_pred ------c--CC----cchhhhhhccchhHHHHHHHHHHHhhhcCch---HHH-------HHHHHHHHHHHHHHHHHHHHH
Q psy2410 96 ------K--KD----STYICETIRLPFNIASYSLLIHIIAHETGLK---VGD-------FIWTGGDCHLYLNHLDQARKQ 153 (198)
Q Consensus 96 ------~--~~----~~~~~~~l~n~~Npk~~~~~~~~~~~~~~~~---~~~-------~v~~~~~~~vya~~~~~lr~~ 153 (198)
+ ++ +.|+++++.|..|||.++++.++++++.+.+ ... +...+.+...|+..+.+.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~f~~g~~~~~~NPk~ilf~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (185)
T TIGR00949 81 SPAAQVELAEQTTWKKSFRRGLLTNLSNPKAVLFFISIFSQFINPNTPTWQLIVLGLTIIVETILWFYVLSLIFSRPAVR 160 (185)
T ss_pred ccccccccccCccHHHHHHHHHHHhccChHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 1 11 1378899999999999988888888774321 111 112344455666666666554
Q ss_pred HhcCCCCCCe
Q psy2410 154 LLRNPGSLPN 163 (198)
Q Consensus 154 L~r~p~~~~~ 163 (198)
+. +|+..++
T Consensus 161 ~~-~~~~~~~ 169 (185)
T TIGR00949 161 RK-YSKQQKW 169 (185)
T ss_pred HH-HHHHHHH
Confidence 43 4443333
No 9
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=99.89 E-value=2.4e-22 Score=161.49 Aligned_cols=142 Identities=20% Similarity=0.334 Sum_probs=117.0
Q ss_pred HhhccCchHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2410 15 ITSISPGPGNILTINHALRYGWRKTLSLIIGQEIALVLIILAISEGAELLL-SSSSILIFIKIFGIIWLMYTSFQMWCAS 93 (198)
Q Consensus 15 ~~~~~PGP~~~~v~~~~~~~G~r~~~~~~~G~~~g~~~~~~~~~~Gl~~l~-~~~~~~~~l~~~G~~yL~ylg~~~~r~~ 93 (198)
.+.++|||+|++++++++++|+|+++..++|..+||.+++.++.+|++.+. .+|+++..++++|++||+|+|++++|++
T Consensus 2 ~~~~~PGP~~~~~i~~~~~~G~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~~ 81 (191)
T PF01810_consen 2 SLAIPPGPVNLLVISNGLRKGFKAGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRSK 81 (191)
T ss_pred eEEecCCHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 357899999999999999999999999999999999999999999999998 5999999999999999999999999986
Q ss_pred cCcC-------C-----cchhhhhhccchhHHHHHHHHHHHhhhcCch-H--H-------HHHHHHHHHHHHHHHHHHHH
Q psy2410 94 INKK-------D-----STYICETIRLPFNIASYSLLIHIIAHETGLK-V--G-------DFIWTGGDCHLYLNHLDQAR 151 (198)
Q Consensus 94 ~~~~-------~-----~~~~~~~l~n~~Npk~~~~~~~~~~~~~~~~-~--~-------~~v~~~~~~~vya~~~~~lr 151 (198)
.+.+ + +.|+++++.|..|||.+.++.++++++.+.+ . . .+...+.+...|+....+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~f~~g~~~~~~NPk~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 161 (191)
T PF01810_consen 82 FSSKSSTQSEAKKQSKSKSFLTGFLLNLLNPKAILFWLAVFPQFISPEYSSTQFLVFILGIFLGSLLWFLLLALLGSRLR 161 (191)
T ss_pred cCcchhhhhhhccccHHHHHHHHHHHHHHhHHHHHHHHHhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5421 1 2478899999999999988888888775521 1 1 11134455566777777777
Q ss_pred HHHhc
Q psy2410 152 KQLLR 156 (198)
Q Consensus 152 ~~L~r 156 (198)
+++++
T Consensus 162 ~~~~~ 166 (191)
T PF01810_consen 162 RKFSS 166 (191)
T ss_pred HHHhh
Confidence 77653
No 10
>KOG0673|consensus
Probab=99.79 E-value=1e-19 Score=148.27 Aligned_cols=95 Identities=44% Similarity=0.720 Sum_probs=92.2
Q ss_pred hhhccchhHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeecCCCCCCCCCcccCeEE
Q psy2410 104 ETIRLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQI 183 (198)
Q Consensus 104 ~~l~n~~Npk~~~~~~~~~~~~~~~~~~~~v~~~~~~~vya~~~~~lr~~L~r~p~~~~~l~i~~~~~~~~d~~~~~~~~ 183 (198)
..++.|.|+-.|+++..+++.-+++.++.++++++.+|+|..+.+.++++|+|+||+.++++|+|+.|+|+||+.||||+
T Consensus 199 mglGVPFnIASYsLLT~miAhv~gl~pgdfiH~lGdahvy~~Hv~al~~Ql~r~PrpFPkl~i~~~~k~id~F~~~df~l 278 (293)
T KOG0673|consen 199 MGLGVPFNIASYSLLTCMIAHVCGLKPGDFIHVLGDAHVYKDHVDALQEQLQRPPRPFPKLKINPEVKDIDDFQAEDFEL 278 (293)
T ss_pred cccCccchhHHHHHHHHHHHHHhCCCCCceEEecchhhhhHHHHHHHHHHHhcCCCCCCceeecccccccccccccceee
Confidence 55778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCccccC
Q psy2410 184 NSYNPQKSIYAPIAI 198 (198)
Q Consensus 184 ~~y~~~~~i~~~~a~ 198 (198)
+||+|||+|+|+|||
T Consensus 279 ~~y~php~I~M~Mav 293 (293)
T KOG0673|consen 279 VGYDPHPKIKMKMAV 293 (293)
T ss_pred eccCCCCCccccccC
Confidence 999999999999996
No 11
>TIGR03284 thym_sym thymidylate synthase. Members of this protein family are thymidylate synthase, an enzyme that produces dTMP from dUMP. In prokaryotes, its gene usually is found close to that for dihydrofolate reductase, and in some systems the two enzymes are found as a fusion protein. This model excludes a set of related proteins (TIGR03283) that appears to replace this family in archaeal methanogens, where tetrahydrofolate is replaced by tetrahydromethanopterin.
Probab=99.77 E-value=3.9e-20 Score=157.50 Aligned_cols=96 Identities=49% Similarity=0.867 Sum_probs=93.1
Q ss_pred hhhhccchhHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeecCCCCCCCCCcccCeE
Q psy2410 103 CETIRLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQ 182 (198)
Q Consensus 103 ~~~l~n~~Npk~~~~~~~~~~~~~~~~~~~~v~~~~~~~vya~~~~~lr~~L~r~p~~~~~l~i~~~~~~~~d~~~~~~~ 182 (198)
+.+++.|.|...++++..++++.++..++.++|.++++|+|..+.+.++++|+|+|+..|+++|+|++|+|+||++|||+
T Consensus 201 D~~lG~pfNiasyalL~~mvA~~~Gl~~G~~~h~igdaHIY~nhi~~v~~qL~R~p~~~P~l~i~~~~~~i~d~~~~Df~ 280 (296)
T TIGR03284 201 DVFLGVPFNIASYALLTHMIAQETGLEVGEFVHTLGDAHLYSNHLEQAKLQLTREPRPLPKLKLNPEKKDIFDFEYEDIE 280 (296)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhCCEeEEEEEEEEEEEEehhHHHHHHHHhcCCCCCCCEEEECCCCCccccCChhHEE
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCccccC
Q psy2410 183 INSYNPQKSIYAPIAI 198 (198)
Q Consensus 183 ~~~y~~~~~i~~~~a~ 198 (198)
|+||+|||+||+||||
T Consensus 281 l~~Y~~hp~ik~~~av 296 (296)
T TIGR03284 281 LEGYDPHPAIKAPVAV 296 (296)
T ss_pred EeCCCCCCcCCccccC
Confidence 9999999999999997
No 12
>PRK01827 thyA thymidylate synthase; Reviewed
Probab=99.76 E-value=9.1e-20 Score=153.80 Aligned_cols=96 Identities=53% Similarity=0.906 Sum_probs=92.8
Q ss_pred hhhhccchhHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeecCCCCCCCCCcccCeE
Q psy2410 103 CETIRLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQ 182 (198)
Q Consensus 103 ~~~l~n~~Npk~~~~~~~~~~~~~~~~~~~~v~~~~~~~vya~~~~~lr~~L~r~p~~~~~l~i~~~~~~~~d~~~~~~~ 182 (198)
+.+++.|.|...++++..++++.++..++.+.|.++++|+|..+.+.++++++|+|+..|+++|||++|+++||++|||+
T Consensus 169 D~~lG~p~Ni~~y~~L~~~vA~~~gl~~G~~~h~~g~~HIY~~h~~~~~~ql~r~p~~~P~l~i~~~~~~~~~~~~~Df~ 248 (264)
T PRK01827 169 DVFLGVPFNIASYALLTHMIAQQTGLKVGEFVHTIGDAHIYSNHLEQAREQLSREPRPLPKLVINPDIKSIFDFEFEDFE 248 (264)
T ss_pred hhhccccchHHHHHHHHHHHHHHcCCeeEEEEEEEeeEEEEhhHhhHHHHHhcCCCCCCCEEEECCCCCCcccCCHhHEE
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCccccC
Q psy2410 183 INSYNPQKSIYAPIAI 198 (198)
Q Consensus 183 ~~~y~~~~~i~~~~a~ 198 (198)
|+||+|||+||+||||
T Consensus 249 l~~Y~~~p~ik~~~av 264 (264)
T PRK01827 249 LEGYDPHPAIKAPVAV 264 (264)
T ss_pred EeCCCCCCcCCccccC
Confidence 9999999999999997
No 13
>COG0207 ThyA Thymidylate synthase [Nucleotide transport and metabolism]
Probab=99.75 E-value=2e-19 Score=150.18 Aligned_cols=96 Identities=49% Similarity=0.849 Sum_probs=92.2
Q ss_pred hhhhccchhHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeecCCCCCCCCCcccCeE
Q psy2410 103 CETIRLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQ 182 (198)
Q Consensus 103 ~~~l~n~~Npk~~~~~~~~~~~~~~~~~~~~v~~~~~~~vya~~~~~lr~~L~r~p~~~~~l~i~~~~~~~~d~~~~~~~ 182 (198)
+.+++.|.|...++.+..++++.++..++.++|.++++|+|..+.++++.+++|+|+..+++.|||+.++++||++||||
T Consensus 173 Di~lg~pfNi~syalL~~mvA~~~Gle~G~f~h~~~daHIY~nh~e~~~~ql~R~p~~~pkl~in~~~~~~f~~~~~Df~ 252 (268)
T COG0207 173 DVFLGVPFNIASYALLTHMVAQVTGLEPGEFVHTIGDAHIYDNHFDQAKEQLKREPRPLPKLVINPKDKDLFDFTFEDFE 252 (268)
T ss_pred cccccccHHHHHHHHHHHHHHHHhCCcceEEEEEeeeeEEEhhhHHHHHHHhccCCCCCCeEEecCCccccccccccceE
Confidence 47899999999999999999999999999999999999999999999999999999999999999866778999999999
Q ss_pred EeCCCCCCCCCccccC
Q psy2410 183 INSYNPQKSIYAPIAI 198 (198)
Q Consensus 183 ~~~y~~~~~i~~~~a~ 198 (198)
|+||+|||+||+||||
T Consensus 253 l~~Y~~~~~ik~~~av 268 (268)
T COG0207 253 LVGYDPHPAIKAPVAV 268 (268)
T ss_pred EECCCCCccccccccC
Confidence 9999999999999997
No 14
>PRK13821 thyA thymidylate synthase; Provisional
Probab=99.74 E-value=3.1e-19 Score=153.30 Aligned_cols=96 Identities=28% Similarity=0.424 Sum_probs=91.3
Q ss_pred hhhhccchhHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeecCCCC-----------
Q psy2410 103 CETIRLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPK----------- 171 (198)
Q Consensus 103 ~~~l~n~~Npk~~~~~~~~~~~~~~~~~~~~v~~~~~~~vya~~~~~lr~~L~r~p~~~~~l~i~~~~~----------- 171 (198)
+.++++|.|...++++..++++.++..++.++|.++++|+|..+.++++++|+|+|+..|++.|+++++
T Consensus 217 D~~LG~PfNiasyalL~~miA~~~gl~~G~~ih~igdaHIY~nhi~~v~eqL~R~P~~~P~l~i~~~~~~~~~~~~~~~~ 296 (323)
T PRK13821 217 DVGLGTPFNLTEGAALLSLVGRLTGYTPRWFTYFIGDAHIYENQLDMLQEQLTREPYESPRLVISDRVPEYAKTGVYEPE 296 (323)
T ss_pred cccccccHHHHHHHHHHHHHHHHhCCEeeeEEEEEEEEEEeHhHHHHHHHHhcCCCCCCCEEEECCCccccccccccccc
Confidence 478899999999999999999999999999999999999999999999999999999999999998754
Q ss_pred CCCCCcccCeEEeCCCCCCCCCccccC
Q psy2410 172 SSLDYNFEDFQINSYNPQKSIYAPIAI 198 (198)
Q Consensus 172 ~~~d~~~~~~~~~~y~~~~~i~~~~a~ 198 (198)
+|+||++|||+|+||+|||+||+||||
T Consensus 297 ~i~d~~~dDf~l~~Y~~hp~Ik~~~av 323 (323)
T PRK13821 297 WLEKIEPSDFSLVGYRHHEPLTAPMAV 323 (323)
T ss_pred chhcCCHhHeEEeCCCCCCCccccccC
Confidence 688999999999999999999999997
No 15
>PTZ00164 bifunctional dihydrofolate reductase-thymidylate synthase; Provisional
Probab=99.69 E-value=7.4e-18 Score=153.83 Aligned_cols=96 Identities=38% Similarity=0.651 Sum_probs=93.1
Q ss_pred hhhhccchhHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeecCCCCCCCCCcccCeE
Q psy2410 103 CETIRLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQ 182 (198)
Q Consensus 103 ~~~l~n~~Npk~~~~~~~~~~~~~~~~~~~~v~~~~~~~vya~~~~~lr~~L~r~p~~~~~l~i~~~~~~~~d~~~~~~~ 182 (198)
+.+++.|.|...++++..++++.++..++.++|.++++|+|..+.++++++|+|+|+..|+++|||+.|+++||++|||+
T Consensus 419 D~~lG~pfNi~~ya~L~~~iA~~~gl~~G~~~h~~g~~HIY~~h~~~~~~ql~r~p~~~P~l~i~~~~~~~~d~~~~Df~ 498 (514)
T PTZ00164 419 DMGLGVPFNIASYALLTHMIAQVCGLRPGEFVHFLGDAHVYSNHVDALKEQLERVPYPFPTLKLKREVENIEDFTIEDIE 498 (514)
T ss_pred hhhhcchhhHHHHHHHHHHHHHHhCCEeeEEEEEeccceeehhhHHHHHHHhcCCCCCCCeEEECCCCCccccCChhHEE
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCccccC
Q psy2410 183 INSYNPQKSIYAPIAI 198 (198)
Q Consensus 183 ~~~y~~~~~i~~~~a~ 198 (198)
|+||+|||+||+||||
T Consensus 499 l~~Y~~~p~i~~~~av 514 (514)
T PTZ00164 499 VIGYVPHPKIKMEMAV 514 (514)
T ss_pred EeCCCCCCcCCccccC
Confidence 9999999999999997
No 16
>COG1279 Lysine efflux permease [General function prediction only]
Probab=99.56 E-value=1.2e-13 Score=111.31 Aligned_cols=160 Identities=16% Similarity=0.124 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHhhccCchHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHH
Q psy2410 3 FKTWISFLLFSIITSISPGPGNILTINHALRYGWRKTLSLIIGQEIALVLIILAISEGAELLL-SSSSILIFIKIFGIIW 81 (198)
Q Consensus 3 ~~~~~~~~~~~~~~~~~PGP~~~~v~~~~~~~G~r~~~~~~~G~~~g~~~~~~~~~~Gl~~l~-~~~~~~~~l~~~G~~y 81 (198)
++.++.-+..++.+++.-||+|+++++||+++ ++.++.++=+.+.|.+.++++++|++.++ ++|.+..++++.|++|
T Consensus 2 ~~~~l~Gfll~~~LI~pIGaQNaFVl~QGi~r--~~~l~~~~~c~i~D~~Li~~gv~G~~~li~~~p~l~~i~~~~G~~F 79 (202)
T COG1279 2 MSAFLQGFLLGASLILPIGAQNAFVLNQGIRR--EYVLPIALLCAISDIVLISAGVFGVGALIAKSPWLLLIVRWGGAAF 79 (202)
T ss_pred hHHHHHHHHHHHHHHHhccchhHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 45677788899999999999999999999998 88999999999999999999999999998 8999999999999999
Q ss_pred HHHHHHHHHhhccCc-CC--------cch----hhhhhccchhHHHHH----HHHHHHhhhcCchHHHH-----HHHHHH
Q psy2410 82 LMYTSFQMWCASINK-KD--------STY----ICETIRLPFNIASYS----LLIHIIAHETGLKVGDF-----IWTGGD 139 (198)
Q Consensus 82 L~ylg~~~~r~~~~~-~~--------~~~----~~~~l~n~~Npk~~~----~~~~~~~~~~~~~~~~~-----v~~~~~ 139 (198)
|+|+|++.||++.+. ++ ... ........+||-.|. +.-+.-.++.+.....| ..++.|
T Consensus 80 Ll~yg~~a~~~a~~~~~~~~~~~~~~~~~~~~l~~alavT~LNPhvyLDtvvliGs~~~~~~~~~k~~F~~Ga~~aS~~W 159 (202)
T COG1279 80 LLYYGLLALKSAPRGPSQLQVAEFTKLKLKKVLLFALAVTLLNPHVYLDTVVLIGSLAAQLSDEAKWFFALGAISASFLW 159 (202)
T ss_pred HHHHHHHHHHhhccchhhccccccccccHHHHHHHHHHHHHhCchhhhhhHhhhhhhhhhcCcchhhHHHHHHHHHHHHH
Confidence 999999999987662 11 111 123344668887553 33344444444432222 233344
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCeee
Q psy2410 140 CHLYLNHLDQARKQLLRNPGSLPNLT 165 (198)
Q Consensus 140 ~~vya~~~~~lr~~L~r~p~~~~~l~ 165 (198)
....+..+..+++.+ ++|+..+.+|
T Consensus 160 F~~L~~~a~~l~~~~-~~pk~~riin 184 (202)
T COG1279 160 FFLLALGARWLSPLL-ANPKAWRIIN 184 (202)
T ss_pred HHHHHHHHHHHchhc-cCcHHHHHHH
Confidence 444444455555544 3565555544
No 17
>PF00303 Thymidylat_synt: Thymidylate synthase; InterPro: IPR000398 Thymidylate synthase (2.1.1.45 from EC) [, ] catalyzes the reductive methylation of dUMP to dTMP with concomitant conversion of 5,10-methylenetetrahydrofolate to dihydrofolate: 5,10-methylenetetrahydrofolate + dUMP = dihydrofolate + dTMP This provides the sole de novo pathway for production of dTMP and is the only enzyme in folate metabolism in which the 5,10-methylenetetrahydrofolate is oxidised during one-carbon transfer []. The enzyme is essential for regulating the balanced supply of the 4 DNA precursors in normal DNA replication: defects in the enzyme activity affecting the regulation process cause various biological and genetic abnormalities, such as thymineless death []. The enzyme is an important target for certain chemotherapeutic drugs. Thymidylate synthase is an enzyme of about 30 to 35 Kd in most species except in protozoan and plants where it exists as a bifunctional enzyme that includes a dihydrofolate reductase domain []. A cysteine residue is involved in the catalytic mechanism (it covalently binds the 5,6-dihydro-dUMP intermediate). The sequence around the active site of this enzyme is conserved from phages to vertebrates.; GO: 0004799 thymidylate synthase activity, 0006231 dTMP biosynthetic process; PDB: 2AAZ_O 3DL5_D 2OIP_B 3DL6_E 3HJ3_C 1TSN_A 1TDU_B 3B5B_A 1KZJ_E 3B9H_A ....
Probab=99.51 E-value=1.7e-16 Score=134.86 Aligned_cols=96 Identities=41% Similarity=0.648 Sum_probs=78.4
Q ss_pred hhhhccchhHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeecCCCCCCCCCcccCeE
Q psy2410 103 CETIRLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQ 182 (198)
Q Consensus 103 ~~~l~n~~Npk~~~~~~~~~~~~~~~~~~~~v~~~~~~~vya~~~~~lr~~L~r~p~~~~~l~i~~~~~~~~d~~~~~~~ 182 (198)
+.+++.|.|...+..+..+++..++..++.+.+.+.++|+|....++++++++|+|+..+++.+++++|+++||++|||+
T Consensus 174 D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~~~~~~~~~l~~~~~~~p~l~~~~~~~~~~~~~~~d~~ 253 (269)
T PF00303_consen 174 DAFLGLPFNIFQYALLQEMIARELGLKPGTYTHFIGSAHIYENHIDAAKEQLKREPYPFPKLEINPEKKSIDDFKPEDFK 253 (269)
T ss_dssp ETTTHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEEEEEEEEGGGHHHHHHHHTS---S--EEEESSTHSSGGGH-GGGEE
T ss_pred hhhhhhcccHHHHHHHHHHHHHHhCCcceEEEEEEcccEeeHhHHHHHHHHHhcCCCCCCEEEeCCCCCChhhCchhhEE
Confidence 36777889999999999999999988888777888999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCccccC
Q psy2410 183 INSYNPQKSIYAPIAI 198 (198)
Q Consensus 183 ~~~y~~~~~i~~~~a~ 198 (198)
|+||+|||+||+||||
T Consensus 254 l~~Y~~~~~i~~~~av 269 (269)
T PF00303_consen 254 LEGYQPHPKIKFEMAV 269 (269)
T ss_dssp EES---SS--SSSSTE
T ss_pred EeCCCCCCCCCccccC
Confidence 9999999999999997
No 18
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=97.50 E-value=0.01 Score=48.61 Aligned_cols=83 Identities=16% Similarity=0.263 Sum_probs=70.0
Q ss_pred HHHHHhhccCchHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h----hHHHHHHHHHHHHHHHHHH
Q psy2410 11 LFSIITSISPGPGNILTINHALRYGWRKTLSLIIGQEIALVLIILAISEGAELLL-S----SSSILIFIKIFGIIWLMYT 85 (198)
Q Consensus 11 ~~~~~~~~~PGP~~~~v~~~~~~~G~r~~~~~~~G~~~g~~~~~~~~~~Gl~~l~-~----~~~~~~~l~~~G~~yL~yl 85 (198)
...+...++|++-.+.+.=-+.++++|+++...+|..++......+..++...+. . .+.....++++-+..++.+
T Consensus 3 ~LAl~~a~sP~~i~~~vlll~~~r~~~~~~af~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lGv~ll~~ 82 (214)
T PF11139_consen 3 PLALVDALSPLPIVIAVLLLSRPRPRRNLLAFLAGWFLGYLAVGLVLLFGLDALPSGSSSAPSPVVGWLQLVLGVLLLLL 82 (214)
T ss_pred HHHHHHHhChHHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCccHHHHHHHHHHHHHHHH
Confidence 3466788999997777765665889999999999999999999999988887776 3 2577889999999999999
Q ss_pred HHHHHhhc
Q psy2410 86 SFQMWCAS 93 (198)
Q Consensus 86 g~~~~r~~ 93 (198)
|++.|+++
T Consensus 83 a~~~~~~~ 90 (214)
T PF11139_consen 83 AVRVWRRR 90 (214)
T ss_pred HHHHhhcc
Confidence 99999876
No 19
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=96.78 E-value=0.17 Score=40.52 Aligned_cols=71 Identities=25% Similarity=0.370 Sum_probs=42.7
Q ss_pred ccCchHHHHHHHHHHhh----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2410 18 ISPGPGNILTINHALRY----GWRKTLSLIIGQEIALVLIILAISEGAELLLSSSSILIFIKIFGIIWLMYTSFQMWCAS 93 (198)
Q Consensus 18 ~~PGP~~~~v~~~~~~~----G~r~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~l~~~G~~yL~ylg~~~~r~~ 93 (198)
+.-|-||+.+++-..++ -+|+... .|...+..+-.....+|-. +++ +..++++|++||+|.|+++++.+
T Consensus 10 ~vLs~DN~~vi~~~t~~lp~~~r~~~~~--~G~~~A~vlr~if~~~G~~-ll~----~~~~~iaGGllLl~ia~~ml~~~ 82 (176)
T TIGR03717 10 LVLGGDNAVVIALAARNLPAHQRKKAIF--WGTAGAIVLRILLTAVAVY-LLA----IPFLKLIGGLLLLWIGWKLLLEE 82 (176)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH-HHH----hHHHHHHHHHHHHHHHHHHHhcc
Confidence 34456888887765322 2233333 3333444444444444433 334 46779999999999999999865
Q ss_pred cC
Q psy2410 94 IN 95 (198)
Q Consensus 94 ~~ 95 (198)
.+
T Consensus 83 ~~ 84 (176)
T TIGR03717 83 EE 84 (176)
T ss_pred cc
Confidence 44
No 20
>PRK10995 inner membrane protein; Provisional
Probab=95.81 E-value=0.58 Score=38.66 Aligned_cols=40 Identities=13% Similarity=0.243 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2410 54 ILAISEGAELLL-SSSSILIFIKIFGIIWLMYTSFQMWCAS 93 (198)
Q Consensus 54 ~~~~~~Gl~~l~-~~~~~~~~l~~~G~~yL~ylg~~~~r~~ 93 (198)
.++.+++-..++ ....-...+|++|++.|+++|+++++++
T Consensus 55 ll~f~~~G~~il~~fgIs~~a~rIaGGilL~~igi~ml~~~ 95 (221)
T PRK10995 55 MMVAFYAGQLVMSTFGISIPGLRIAGGLIVAFIGFRMLFPQ 95 (221)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 334444445555 3444467899999999999999999764
No 21
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=94.91 E-value=0.35 Score=39.96 Aligned_cols=67 Identities=21% Similarity=0.337 Sum_probs=40.0
Q ss_pred chHHHHHHHHHHhh----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy2410 21 GPGNILTINHALRY----GWRKTLSLIIGQEIALVLIILAISEGAELLLSSSSILIFIKIFGIIWLMYTSFQMWCASI 94 (198)
Q Consensus 21 GP~~~~v~~~~~~~----G~r~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~l~~~G~~yL~ylg~~~~r~~~ 94 (198)
|-||+.+++-..++ -+|++ ...|...+.+.=+.+..+|. .+++.+ .++++|++||+|.|+|.+++..
T Consensus 8 S~DN~~via~~~~~LP~~~r~~a--l~~Gi~gAivlR~i~i~~~~-~Ll~~~----~l~~iGG~~Ll~~~~k~l~~~~ 78 (215)
T TIGR03716 8 SADNALVLAVMVKHLPEKQRKKA--LFYGLIGAYVFRFIALFLAS-FLIKFW----WIKAIGALYLLYLAIKHFRKKK 78 (215)
T ss_pred HhhHHHHHHHHHhhCCHHHHHHH--HHHHHHHHHHHHHHHHHHHH-HHHHHH----HHHHHHHHHHHHHHHHHHHhcc
Confidence 44666666655432 22333 34444455444444444433 333444 4789999999999999998753
No 22
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=94.08 E-value=0.6 Score=37.55 Aligned_cols=68 Identities=28% Similarity=0.304 Sum_probs=41.3
Q ss_pred chHHHHHHHHHHhh----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy2410 21 GPGNILTINHALRY----GWRKTLSLIIGQEIALVLIILAISEGAELLLSSSSILIFIKIFGIIWLMYTSFQMWCASI 94 (198)
Q Consensus 21 GP~~~~v~~~~~~~----G~r~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~l~~~G~~yL~ylg~~~~r~~~ 94 (198)
|=||+++++...++ -+++++..+++ .+..+=..+..++. .+++. +..++++|++||+|.|+|.+++..
T Consensus 11 s~DN~~vi~~~~~~lp~~~r~kal~~Gi~--~A~~lR~~~i~~~~-~ll~~---~~~i~~igG~~Ll~~a~k~~~~~~ 82 (183)
T PF03741_consen 11 SIDNAFVIAMIFRKLPPEQRRKALFWGII--GAIVLRIIFIFLAS-WLLSI---FPWILLIGGLFLLYIAIKLLHEER 82 (183)
T ss_pred HhhHHHHHHHHHhCCCHHHhhhhHHHhHH--HHHHHHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45788777766543 23444444433 33333333333322 22222 467999999999999999998864
No 23
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=93.16 E-value=1.1 Score=38.87 Aligned_cols=72 Identities=22% Similarity=0.154 Sum_probs=43.6
Q ss_pred ccCchHHHHHHHHHHh------hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2410 18 ISPGPGNILTINHALR------YGWRKTLSLIIGQEIALVLIILAISEGAELLLSSSSILIFIKIFGIIWLMYTSFQMWC 91 (198)
Q Consensus 18 ~~PGP~~~~v~~~~~~------~G~r~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~l~~~G~~yL~ylg~~~~r 91 (198)
.+-+-||+++...-.+ +-+++++. .|+..+.+.=......|...+.+. ..++++|++||+|.|+|+++
T Consensus 73 ~~LSvDN~fV~~~if~~f~vP~~~q~rvL~--~Gi~gAlvlR~i~i~~g~~Li~~f----~wi~~ifG~fLi~~a~k~~~ 146 (302)
T TIGR03718 73 KSLSVDNLFVFLLIFSYFAVPREYQHRVLF--WGILGALVLRAIFIALGAALIEQF----HWVLYIFGAFLLYTGIKMLF 146 (302)
T ss_pred HHHHhHHHHHHHHHHHhcCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHh
Confidence 4445688887766321 22334433 344444444444555554443333 45899999999999999998
Q ss_pred hccC
Q psy2410 92 ASIN 95 (198)
Q Consensus 92 ~~~~ 95 (198)
+..+
T Consensus 147 ~~~~ 150 (302)
T TIGR03718 147 EGDE 150 (302)
T ss_pred hccc
Confidence 6543
No 24
>PF02417 Chromate_transp: Chromate transporter; InterPro: IPR003370 This entry represents chromate transporters (CHR) [, ]. These proteins reduce chromate accumulation and are essential for chromate resistance. They are composed of one or two copies of this region. The short-chain CHR proteins form heterodimer transporters which efflux chromate ions from the cytoplasm, while the long chain CHR proteins appear to have arisen from a gene fusion event of two short chain transporters[].; GO: 0015109 chromate transmembrane transporter activity, 0015703 chromate transport
Probab=91.81 E-value=5.2 Score=31.40 Aligned_cols=81 Identities=16% Similarity=0.120 Sum_probs=53.8
Q ss_pred HHHHhhccCchHHH-HHHHHHH-hhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHH
Q psy2410 12 FSIITSISPGPGNI-LTINHAL-RYGWRKTLSLIIGQEIALVLIILAISEGAELLLSSSSI---LIFIKIFGIIWLMYTS 86 (198)
Q Consensus 12 ~~~~~~~~PGP~~~-~v~~~~~-~~G~r~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~---~~~l~~~G~~yL~ylg 86 (198)
...+.-++|||... ...--|. .+|+..++.+.+|..+-..+.+.+..........+|.+ +..++-+-+..++..+
T Consensus 46 ~~al~q~~PGP~~~n~a~~iG~~~~G~~Gai~a~~~~~lP~~l~~~~~~~~~~~~~~~~~v~~~l~g~~~~~~gli~~~~ 125 (169)
T PF02417_consen 46 GLALAQALPGPIAINLATFIGYRLAGFLGAIVATIGFILPSFLLILLLSPLYSRFRENPWVQAFLKGVRPAVVGLILAAA 125 (169)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456789999865 4443333 45777777777777777777666655555554445544 4555666667888888
Q ss_pred HHHHhh
Q psy2410 87 FQMWCA 92 (198)
Q Consensus 87 ~~~~r~ 92 (198)
++++|+
T Consensus 126 ~~l~~~ 131 (169)
T PF02417_consen 126 IKLAKK 131 (169)
T ss_pred HHHHHH
Confidence 888876
No 25
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=85.83 E-value=18 Score=29.50 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2410 55 LAISEGAELLLSSSSILIFIKIFGIIWLMYTSFQMWCAS 93 (198)
Q Consensus 55 ~~~~~Gl~~l~~~~~~~~~l~~~G~~yL~ylg~~~~r~~ 93 (198)
....+|-..+....-=...+|++|++-|+..|+++++.+
T Consensus 56 ~f~~~G~~iL~~fgIsl~afrIaGGiiL~~ia~~ml~~~ 94 (201)
T TIGR00427 56 IFLVFGDTILKLFGISIDAFRIAGGILLFTIAMDMLSGE 94 (201)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 334444332222333357889999999999999999654
No 26
>TIGR00937 2A51 chromate transporter, chromate ion transporter (CHR) family. Cutoffs for this model have now been lowered, compared to a previous version, giving the model a scope more similar to that of Pfam model pfam02417. Members of the original, more narrowly defined family score above 500.00 bits.
Probab=82.45 E-value=25 Score=31.37 Aligned_cols=83 Identities=11% Similarity=0.073 Sum_probs=57.6
Q ss_pred HHHHhhccCchHHHHHH-HHH-HhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHH
Q psy2410 12 FSIITSISPGPGNILTI-NHA-LRYGWRKTLSLIIGQEIALVLIILAISEGAELLLSSS---SILIFIKIFGIIWLMYTS 86 (198)
Q Consensus 12 ~~~~~~~~PGP~~~~v~-~~~-~~~G~r~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~---~~~~~l~~~G~~yL~ylg 86 (198)
...+.-++|||+.+-+. --| ..+|+..++.+.+|..+-..+.+.+.........+.| .++..++-..++.++.-+
T Consensus 38 ~~alaq~~PGP~~~n~a~~iG~~~~G~~Gal~a~~~~~lP~~ili~~l~~~~~~~~~~~~~~~~~~g~~~~~vgli~~a~ 117 (368)
T TIGR00937 38 LVALAQFLPGPASSQVAIYLGYLLGGIVGAILAGLAFTLPSFLLVVALAWAYVHYGSLPAVGAWFYGLQAAVIALIAQAV 117 (368)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHH
Confidence 34456789999876332 222 3458888888888888887777765555444443334 466778888888888999
Q ss_pred HHHHhhcc
Q psy2410 87 FQMWCASI 94 (198)
Q Consensus 87 ~~~~r~~~ 94 (198)
+++.|+..
T Consensus 118 ~~l~~~~~ 125 (368)
T TIGR00937 118 WKLGKKLV 125 (368)
T ss_pred HHHHHHHh
Confidence 99988764
No 27
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=81.53 E-value=22 Score=28.83 Aligned_cols=102 Identities=14% Similarity=0.185 Sum_probs=66.4
Q ss_pred HHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh---------ccC-
Q psy2410 26 LTINHALRYGWRKTLSLIIGQEIALVLIILAISEGAELLLSSSSILIFIKIFGIIWLMYTSFQMWCA---------SIN- 95 (198)
Q Consensus 26 ~v~~~~~~~G~r~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~l~~~G~~yL~ylg~~~~r~---------~~~- 95 (198)
.-+++|-++|...++-..+|..+-..+...-...-+..--.--.......-+=-+||-|-.++.-+. ...
T Consensus 30 ~~~~~G~~~g~~~~~G~~~G~~v~~~l~~~Gl~all~~~~~~f~~lk~~GaaYL~ylg~~~~ra~~~~~~~~~~~~~~~~ 109 (208)
T COG1280 30 RSLSRGRRAGLATALGIALGDLVHMLLAALGLAALLATSPALFTVLKLAGAAYLLYLGWKALRAGGAALAEEAAGAPSSS 109 (208)
T ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccch
Confidence 4568889999999999999988775555543223333333223444555556667888887775421 011
Q ss_pred --cCCcchhhhhhccchhHHHH-HHHHHHHhhhcC
Q psy2410 96 --KKDSTYICETIRLPFNIASY-SLLIHIIAHETG 127 (198)
Q Consensus 96 --~~~~~~~~~~l~n~~Npk~~-~~~~~~~~~~~~ 127 (198)
+.=.......+.|||...|| +++||++++..+
T Consensus 110 ~~~~f~~G~~~~l~NPK~~lf~la~~pqfv~~~~~ 144 (208)
T COG1280 110 RRKAFRRGLLVNLLNPKAILFFLAFLPQFVDPGAG 144 (208)
T ss_pred hHHHHHHHHHHHhhCcHHHHHHHHHHhhhcCCCCc
Confidence 23233457889999999877 588999976654
No 28
>TIGR00937 2A51 chromate transporter, chromate ion transporter (CHR) family. Cutoffs for this model have now been lowered, compared to a previous version, giving the model a scope more similar to that of Pfam model pfam02417. Members of the original, more narrowly defined family score above 500.00 bits.
Probab=80.42 E-value=36 Score=30.29 Aligned_cols=85 Identities=16% Similarity=0.115 Sum_probs=52.3
Q ss_pred HHHHHHHhhccCchHHHHHHHHHH-hhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHH
Q psy2410 9 FLLFSIITSISPGPGNILTINHAL-RYGWRKTLSLIIGQEIALVLIILAISEGAELLLSSSS---ILIFIKIFGIIWLMY 84 (198)
Q Consensus 9 ~~~~~~~~~~~PGP~~~~v~~~~~-~~G~r~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~---~~~~l~~~G~~yL~y 84 (198)
|.-...+.-++|||......--|. .+|...++.+.+|..+-..+.+.....-...+.++|. ++..++-+-...++.
T Consensus 244 F~~~~alaq~~PGP~~~~a~~iG~~~~G~~Ga~~A~~g~~lP~~lli~~l~~~~~~~~~~~~v~~~l~Gi~~avvgli~~ 323 (368)
T TIGR00937 244 FLDGIALAQITPGPLFITATFIGYLVAGFPGAIAATVAIFLPSFLLVLGVLPYFKKLGKNPIIRAFLDGVNAGVVGLLVA 323 (368)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhHHHHHHHHHH
Confidence 334445577999998764443333 3466677777777766666555444333333334554 455666677777788
Q ss_pred HHHHHHhhc
Q psy2410 85 TSFQMWCAS 93 (198)
Q Consensus 85 lg~~~~r~~ 93 (198)
.++++.|+.
T Consensus 324 a~~~l~~~~ 332 (368)
T TIGR00937 324 ATIDLARTS 332 (368)
T ss_pred HHHHHHHHH
Confidence 888888754
No 29
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=79.07 E-value=11 Score=26.69 Aligned_cols=33 Identities=6% Similarity=0.121 Sum_probs=26.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2410 61 AELLLSSSSILIFIKIFGIIWLMYTSFQMWCAS 93 (198)
Q Consensus 61 l~~l~~~~~~~~~l~~~G~~yL~ylg~~~~r~~ 93 (198)
++++-.-|-+-..+.++|-.|..|..+|-+..+
T Consensus 39 l~aIn~iPll~~llElvGlgyt~wF~~ryLL~~ 71 (90)
T PF14159_consen 39 LDAINSIPLLPGLLELVGLGYTGWFVYRYLLFA 71 (90)
T ss_pred HHHHHcCcchHHHHHHHHHHHHhHHHHHHHcCh
Confidence 344446788888899999999999999977543
No 30
>PRK11111 hypothetical protein; Provisional
Probab=78.76 E-value=28 Score=28.63 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q psy2410 71 LIFIKIFGIIWLMYTSFQMWCAS 93 (198)
Q Consensus 71 ~~~l~~~G~~yL~ylg~~~~r~~ 93 (198)
...+|++|++-|+..|+++++.+
T Consensus 75 l~afrIaGGiiL~~ial~Ml~g~ 97 (214)
T PRK11111 75 IDSFRIAGGILVVTIAMSMISGK 97 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC
Confidence 56889999999999999999654
No 31
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=78.11 E-value=35 Score=27.66 Aligned_cols=53 Identities=23% Similarity=0.447 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHH-hhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy2410 38 KTLSLIIGQEIALVLIILAISEGA-ELLL-SSSSILIFIKIFGIIWLMYTSFQMWCASI 94 (198)
Q Consensus 38 ~~~~~~~G~~~g~~~~~~~~~~Gl-~~l~-~~~~~~~~l~~~G~~yL~ylg~~~~r~~~ 94 (198)
+-....+|--+|..+.+.++..+. +... -.+|+ +.++|- -=+++|+|.+.++.
T Consensus 24 ~~~~I~~GqylG~~~Lv~~Sl~~~~~l~~ip~~wi---LGlLGl-iPI~lGi~~l~~~~ 78 (191)
T PF03596_consen 24 RRRQIVIGQYLGFTILVLASLLGAFGLLFIPPEWI---LGLLGL-IPIYLGIKALFSGE 78 (191)
T ss_pred ChhhhhhhHHHHHHHHHHHHHHHHHHHHhCCHHHH---HHHHHH-HHHHHHHHHHHcCC
Confidence 345688899999888877777653 2222 23343 344443 45788998775544
No 32
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=73.56 E-value=37 Score=27.59 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy2410 69 SILIFIKIFGIIWLMYTSFQMWCASIN 95 (198)
Q Consensus 69 ~~~~~l~~~G~~yL~ylg~~~~r~~~~ 95 (198)
-=...+|++|++-|+.+|+++++.+.+
T Consensus 67 Isl~af~IaGGiiL~~ia~~ml~~~~~ 93 (203)
T PF01914_consen 67 ISLPAFRIAGGIILFLIALEMLFGSPS 93 (203)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 335688999999999999999976543
No 33
>PLN02777 photosystem I P subunit (PSI-P)
Probab=71.06 E-value=11 Score=29.93 Aligned_cols=33 Identities=6% Similarity=0.065 Sum_probs=26.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2410 61 AELLLSSSSILIFIKIFGIIWLMYTSFQMWCAS 93 (198)
Q Consensus 61 l~~l~~~~~~~~~l~~~G~~yL~ylg~~~~r~~ 93 (198)
++++-..|-+=..+.++|.+|..|+.||-+..+
T Consensus 114 L~AId~lPLlP~lLELVGigYs~WF~yRyLLfk 146 (167)
T PLN02777 114 ISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFK 146 (167)
T ss_pred HHHHhccccccchHHHhhhhhhhhhhhhHhcCc
Confidence 344445688888999999999999999977544
No 34
>PRK00956 thyA thymidylate synthase; Provisional
Probab=70.75 E-value=0.44 Score=39.10 Aligned_cols=53 Identities=17% Similarity=0.196 Sum_probs=48.3
Q ss_pred hhhhccchhHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2410 103 CETIRLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLL 155 (198)
Q Consensus 103 ~~~l~n~~Npk~~~~~~~~~~~~~~~~~~~~v~~~~~~~vya~~~~~lr~~L~ 155 (198)
+.+++.|.|...++.+..++++.++...+.+.+...++|+|....+.++++++
T Consensus 155 D~~~g~p~N~~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~~~~~v~~~l~ 207 (208)
T PRK00956 155 DAGGAFHANAIGLIKLGEYVAEKVGVELGTYTHHSVSAHIYERDWDYLEKIFK 207 (208)
T ss_pred hhhcccchHHHHHHHHHHHHHHHhCCcceEEEEEEEEEEEeHHHHHHHHHHhc
Confidence 47788899999999999999999999998888999999999999999999875
No 35
>COG4280 Predicted membrane protein [Function unknown]
Probab=70.12 E-value=20 Score=29.50 Aligned_cols=84 Identities=19% Similarity=0.333 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHHhhccCchHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Q psy2410 1 MIFKTWISFLLFSIITSISPGPGNILTINHALRYGWRKTLSLIIGQEIALVLIILAISEGAELLLS-SSSILIFIKIFGI 79 (198)
Q Consensus 1 M~~~~~~~~~~~~~~~~~~PGP~~~~v~~~~~~~G~r~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~-~~~~~~~l~~~G~ 79 (198)
|+++.+++-+..+++=..--| ..+..-+..+++|.++. |..+|..+...++ +-++-.++ -| .+.++++-+
T Consensus 1 Mnwsi~lAAl~sSlvElvEa~---aIa~avg~~~~wr~al~---ga~lglalvl~l~-lvlGk~L~lvP--ln~lqiv~g 71 (236)
T COG4280 1 MNWSIFLAALGSSLVELVEAG---AIAAAVGNIYKWRLALI---GAVLGLALVLILT-LVLGKLLYLVP--LNYLQIVSG 71 (236)
T ss_pred CcHHHHHHHHHHHHHHHHHHH---HHHHhhhhhccccHHHH---HHHHHHHHHHHHH-HHHccceeeee--chHHHHHHH
Confidence 777777776666665444332 33444455667777554 3334433322221 11222221 12 367888999
Q ss_pred HHHHHHHHHHHhhc
Q psy2410 80 IWLMYTSFQMWCAS 93 (198)
Q Consensus 80 ~yL~ylg~~~~r~~ 93 (198)
.-|+|+|+|-.|++
T Consensus 72 vLLllFG~rw~Rsa 85 (236)
T COG4280 72 VLLLLFGYRWIRSA 85 (236)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999875
No 36
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=67.75 E-value=61 Score=25.82 Aligned_cols=98 Identities=13% Similarity=0.009 Sum_probs=54.0
Q ss_pred HHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh-----hccCcCCcch
Q psy2410 27 TINHALRYGWRKTLSLIIGQEIALVLIILAISEGAELLLSSSSILIFIKIFGIIWLMYTSFQMWC-----ASINKKDSTY 101 (198)
Q Consensus 27 v~~~~~~~G~r~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~l~~~G~~yL~ylg~~~~r-----~~~~~~~~~~ 101 (198)
-+++|.+++.+...-...|..+-..+.......-+...-..-.+..+...+=-+||-|-.+|.=. +.++..-...
T Consensus 31 ~~~~G~r~a~~~~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~Ga~YLlyLg~~~~~s~~~~~~~~~~~~~f~~G 110 (195)
T PRK10323 31 ATSHGFRQSTRVLAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAYIVWLAWKIATSPTKEDGLQAKPISFWAS 110 (195)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCCCChhHHHH
Confidence 45677777777777777777765443332222222232222333334444444555555555311 1122333334
Q ss_pred hhhhhccchhHHHH-HHHHHHHhh
Q psy2410 102 ICETIRLPFNIASY-SLLIHIIAH 124 (198)
Q Consensus 102 ~~~~l~n~~Npk~~-~~~~~~~~~ 124 (198)
....+.|||...++ +++|+++++
T Consensus 111 ~~~~l~NPKa~lf~~a~~~~f~~~ 134 (195)
T PRK10323 111 FALQFVNVKIILYGITALSTFVLP 134 (195)
T ss_pred HHHHhHCHHHHHHHHHHHHHhhCc
Confidence 57889999999876 578998865
No 37
>COG2059 ChrA Chromate transport protein ChrA [Inorganic ion transport and metabolism]
Probab=67.12 E-value=68 Score=26.11 Aligned_cols=82 Identities=16% Similarity=0.092 Sum_probs=47.3
Q ss_pred HHHhhccCchHHHHHHH-HHH-hhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH
Q psy2410 13 SIITSISPGPGNILTIN-HAL-RYGWRKTLSLIIGQEIALVLIILAISEGAELLLSSS---SILIFIKIFGIIWLMYTSF 87 (198)
Q Consensus 13 ~~~~~~~PGP~~~~v~~-~~~-~~G~r~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~---~~~~~l~~~G~~yL~ylg~ 87 (198)
....-++|||...-+.. -|. ..|.+.++...++..+-..+.+.....-...+-..| .++..+|.+=.+-++-.+|
T Consensus 52 laisq~lPGP~a~~la~~vGy~~~G~~Ga~ia~lafvLPs~i~~~~l~~~~~~~~~~~~v~~~~~glk~~ii~lv~~~~~ 131 (195)
T COG2059 52 LAISQLLPGPIATQLAIYVGYKLAGILGALIAGLAFVLPSILIMLGLALLLKRFGDLPLVKGILKGLKPAIIALVLQAVW 131 (195)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567899998544332 232 346666666666655555554433333233332344 4556677777777777788
Q ss_pred HHHhhcc
Q psy2410 88 QMWCASI 94 (198)
Q Consensus 88 ~~~r~~~ 94 (198)
++.|+..
T Consensus 132 ~l~~~~~ 138 (195)
T COG2059 132 RLGKKAL 138 (195)
T ss_pred HHHHHhh
Confidence 8887653
No 38
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=65.20 E-value=85 Score=26.60 Aligned_cols=79 Identities=23% Similarity=0.295 Sum_probs=46.9
Q ss_pred HHHHHHhhccCchHHHHHHHHHHhh----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHH
Q psy2410 10 LLFSIITSISPGPGNILTINHALRY----GWRKTLSLIIGQEIALVLIILAISEGAELLLS-SSSILIFIKIFGIIWLMY 84 (198)
Q Consensus 10 ~~~~~~~~~~PGP~~~~v~~~~~~~----G~r~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~-~~~~~~~l~~~G~~yL~y 84 (198)
+.++.++=..-|-||+.+++-..++ =|++++...++ .+.+.=..+... .+.++. .++++. +.+.||+|
T Consensus 20 l~tl~~lE~vL~iDN~iviai~~~~Lp~~qr~ral~~Gl~--~A~v~R~~ll~~-~s~Ll~l~~~l~~----~fg~~L~~ 92 (254)
T COG0861 20 LLTLILLEIVLGIDNAIVIAILASKLPPKQRKKALFIGLA--GALVLRIILLAS-ISWLLTLTQPLLY----IFGLYLLW 92 (254)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhCCHHHHHHHHHHHHH--HHHHHHHHHHHH-HHHHHHhhHHHHH----HHHHHHHH
Confidence 3345555567788999998877643 34566554443 333333333322 334443 333333 38999999
Q ss_pred HHHHHHhhccC
Q psy2410 85 TSFQMWCASIN 95 (198)
Q Consensus 85 lg~~~~r~~~~ 95 (198)
.++++++....
T Consensus 93 ~~~~ll~~~~~ 103 (254)
T COG0861 93 RDIKLLLGGLF 103 (254)
T ss_pred HHHHHHhcchh
Confidence 99999987543
No 39
>COG0785 CcdA Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]
Probab=61.99 E-value=90 Score=25.77 Aligned_cols=84 Identities=12% Similarity=0.132 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhccCc-----hHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHH
Q psy2410 7 ISFLLFSIITSISPG-----PGNILTINHALRYGWRKTLSLIIGQEIALVLIILAISEGAELLL-SSSSILIFIKIFGII 80 (198)
Q Consensus 7 ~~~~~~~~~~~~~PG-----P~~~~v~~~~~~~G~r~~~~~~~G~~~g~~~~~~~~~~Gl~~l~-~~~~~~~~l~~~G~~ 80 (198)
...+...+...+||= |..+..+...-.+.+++.....++...|..........+.+.+- ..+.....++++++.
T Consensus 14 ~~aflaGlls~lSPCilpllP~~l~~~~~~~~~~r~~~~~~~l~FvlG~~~vf~~lG~~~~~~~~~~~~~~~~l~~i~gi 93 (220)
T COG0785 14 LLAFLAGLLSFLSPCVLPLLPAYLSYLAGGSLGARKSVLLASLLFVLGFATVFVLLGIGASGLGAFLPLNRLYLRYIAGI 93 (220)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666664 23333332222222566666666666666555555555554444 356666699999999
Q ss_pred HHHHHHHHHH
Q psy2410 81 WLMYTSFQMW 90 (198)
Q Consensus 81 yL~ylg~~~~ 90 (198)
.++-+|++..
T Consensus 94 ~li~~Gl~~l 103 (220)
T COG0785 94 LLILLGLLFL 103 (220)
T ss_pred HHHHHHHHHH
Confidence 9999997655
No 40
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=61.47 E-value=1.4e+02 Score=28.24 Aligned_cols=81 Identities=16% Similarity=0.217 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhhccCc-----hHHHHHHHH-----HHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHH
Q psy2410 5 TWISFLLFSIITSISPG-----PGNILTINH-----ALRYGWRKTLSLIIGQEIALVLIILAISEGAELLL----SSSSI 70 (198)
Q Consensus 5 ~~~~~~~~~~~~~~~PG-----P~~~~v~~~-----~~~~G~r~~~~~~~G~~~g~~~~~~~~~~Gl~~l~----~~~~~ 70 (198)
.++.+++..+++.++|= |-....+.. +.+++++.++...+|..+.+.+...+++. ++..+ ++|
T Consensus 168 ~l~~afl~Glll~l~PCvlP~lpi~~~~~~~~~~~~~~~~~~~~~l~y~lG~~~ty~~lG~~a~~-~G~~~~~~~q~~-- 244 (571)
T PRK00293 168 SLLWFFLIGIGLAFTPCVLPMYPILSGIVLGGKQRLSTARALLLSFVYVQGMALTYTLLGLVVAA-AGLQFQAALQHP-- 244 (571)
T ss_pred HHHHHHHHHHHHhccchhhHhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhH--
Confidence 34556677777777773 322222211 11223444566777777776665444332 22222 223
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy2410 71 LIFIKIFGIIWLMYTSFQMW 90 (198)
Q Consensus 71 ~~~l~~~G~~yL~ylg~~~~ 90 (198)
++.+..++.++.+|..++
T Consensus 245 --~~~~~~~~l~v~lgL~~~ 262 (571)
T PRK00293 245 --YVLIGLSILFVLLALSMF 262 (571)
T ss_pred --HHHHHHHHHHHHHHHHHh
Confidence 334444566667777654
No 41
>COG1279 Lysine efflux permease [General function prediction only]
Probab=59.67 E-value=78 Score=25.96 Aligned_cols=64 Identities=13% Similarity=0.102 Sum_probs=50.1
Q ss_pred HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2410 29 NHALRYGWRKTLSLIIGQEIALVLIILAISEGAELLL---SSSSILIFIKIFGIIWLMYTSFQMWCA 92 (198)
Q Consensus 29 ~~~~~~G~r~~~~~~~G~~~g~~~~~~~~~~Gl~~l~---~~~~~~~~l~~~G~~yL~ylg~~~~r~ 92 (198)
+.+.+.+--.-+..++|..++..+|-..-++|...+. .+|...+++-.+-++-+.-+|.++.+.
T Consensus 135 s~~~~~~~~~k~~F~~Ga~~aS~~WF~~L~~~a~~l~~~~~~pk~~riin~vva~vM~~ia~~L~~~ 201 (202)
T COG1279 135 SLAAQLSDEAKWFFALGAISASFLWFFLLALGARWLSPLLANPKAWRIINLVVAVVMWALAVKLAVQ 201 (202)
T ss_pred hhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHchhccCcHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4445555556688999999999999877777765553 578999999999999999999887653
No 42
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=57.16 E-value=1.1e+02 Score=25.08 Aligned_cols=43 Identities=16% Similarity=0.216 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy2410 52 LIILAISEGAELLLSSSSILIFIKIFGIIWLMYTSFQMWCASI 94 (198)
Q Consensus 52 ~~~~~~~~Gl~~l~~~~~~~~~l~~~G~~yL~ylg~~~~r~~~ 94 (198)
+......+|-..+.....-...++++|++-|++.|++++..+.
T Consensus 53 ill~f~~~G~~il~~fgIsi~a~rIAGGilLf~ia~~ml~~~~ 95 (203)
T COG2095 53 ILLVFLLLGEGILRFFGISIDAFRIAGGILLFLIALRMLFGPT 95 (203)
T ss_pred HHHHHHHHHHHHHHHhCCchhHHHHhhhHHHHHHHHHHhcCCc
Confidence 3333344443333233444578899999999999999997654
No 43
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=56.77 E-value=64 Score=25.67 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy2410 69 SILIFIKIFGIIWLMYTSFQMWC 91 (198)
Q Consensus 69 ~~~~~l~~~G~~yL~ylg~~~~r 91 (198)
+-+..++++|+++|.|.|.|++-
T Consensus 152 ~~~p~l~~~~~~~L~~ig~kl~~ 174 (176)
T TIGR03717 152 DRFPWIIYIGAALLGYVAGEMIV 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44678899999999999999874
No 44
>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation. DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=55.96 E-value=1.1e+02 Score=24.65 Aligned_cols=52 Identities=17% Similarity=0.177 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2410 40 LSLIIGQEIALVLIILAISEGAELLL-SSSSILIFIKIFGIIWLMYTSFQMWC 91 (198)
Q Consensus 40 ~~~~~G~~~g~~~~~~~~~~Gl~~l~-~~~~~~~~l~~~G~~yL~ylg~~~~r 91 (198)
+...+...+|..+...+...+.+.+. ..+.....+.++.+..++.+|...+.
T Consensus 41 ~~~~l~f~~G~~~~~~~lG~~~~~~g~~~~~~~~~~~~i~g~~~i~~Gl~~l~ 93 (211)
T PF02683_consen 41 LLLGLAFVLGFALVFALLGLGAGALGSFFGQISPWLYIIAGVLLILFGLSLLG 93 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444433333333333333 23455667778888888888887763
No 45
>PRK11469 hypothetical protein; Provisional
Probab=53.98 E-value=1.1e+02 Score=24.46 Aligned_cols=21 Identities=10% Similarity=0.213 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q psy2410 73 FIKIFGIIWLMYTSFQMWCAS 93 (198)
Q Consensus 73 ~l~~~G~~yL~ylg~~~~r~~ 93 (198)
.-+|+|+.-|+++|.++++++
T Consensus 68 ~~~~i~~~lL~~lG~~mi~e~ 88 (188)
T PRK11469 68 WNHWIAFVLLIFLGGRMIIEG 88 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 448999999999999999876
No 46
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=51.50 E-value=86 Score=25.06 Aligned_cols=22 Identities=9% Similarity=0.224 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy2410 69 SILIFIKIFGIIWLMYTSFQMW 90 (198)
Q Consensus 69 ~~~~~l~~~G~~yL~ylg~~~~ 90 (198)
+-+..+++.|+++|.|.|.+++
T Consensus 160 ~~~p~l~~~~~~~L~~ig~~li 181 (183)
T PF03741_consen 160 ERFPYLKYLAAAILGFIGVKLI 181 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4456789999999999999986
No 47
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=51.26 E-value=1.2e+02 Score=24.05 Aligned_cols=98 Identities=18% Similarity=0.180 Sum_probs=52.8
Q ss_pred HHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---h------h-ccCc
Q psy2410 27 TINHALRYGWRKTLSLIIGQEIALVLIILAISEGAELLLSSSSILIFIKIFGIIWLMYTSFQMW---C------A-SINK 96 (198)
Q Consensus 27 v~~~~~~~G~r~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~l~~~G~~yL~ylg~~~~---r------~-~~~~ 96 (198)
.++++.++|...++-..+|..+-..+...-...-+...-..-....++.-+=-.||-|-.+|.- . + +...
T Consensus 31 ~~~~G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg~~~~~s~~~~~~~~~~~~~~~~~ 110 (205)
T PRK10520 31 SISHGYRGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWAGAAYLIWLGIQQWRAAGAIDLHTLASTQSRRR 110 (205)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccCCccHHH
Confidence 4577888888888777777766544333222222333332233344444444455555555531 0 0 1123
Q ss_pred CCcchhhhhhccchhHHHH-HHHHHHHhh
Q psy2410 97 KDSTYICETIRLPFNIASY-SLLIHIIAH 124 (198)
Q Consensus 97 ~~~~~~~~~l~n~~Npk~~-~~~~~~~~~ 124 (198)
.-.......+.|||...|+ +++|+++++
T Consensus 111 ~f~~g~~~~l~NPKailf~~a~~p~f~~~ 139 (205)
T PRK10520 111 LFKRAVFVNLTNPKSIVFLAALFPQFIMP 139 (205)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHcccccCC
Confidence 2223457778888888765 467787643
No 48
>PRK10958 leucine export protein LeuE; Provisional
Probab=47.95 E-value=1.5e+02 Score=23.95 Aligned_cols=98 Identities=8% Similarity=0.160 Sum_probs=53.2
Q ss_pred HHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--h---------hccC
Q psy2410 27 TINHALRYGWRKTLSLIIGQEIALVLIILAISEGAELLLSSSSILIFIKIFGIIWLMYTSFQMW--C---------ASIN 95 (198)
Q Consensus 27 v~~~~~~~G~r~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~l~~~G~~yL~ylg~~~~--r---------~~~~ 95 (198)
-++++.++|...++-..+|..+-..+.......-+...-..-....++..+=-+||-|-.+|.= + ++..
T Consensus 35 ~~~~G~r~~~~~~~G~~~g~~~~~~~~~~G~~~l~~~~p~~~~~l~~~G~~yL~~la~~~~~~~~~~~~~~~~~~~~~~~ 114 (212)
T PRK10958 35 AARRGVKAGYRAACGVFIGDAVLMFLAAAGVASLLKATPLLFNVVKYLGAAYLLYLGVKMLRAALRRWRRRAASAAPPYG 114 (212)
T ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCcchh
Confidence 3567777777777777777766655444333333333332233334444444455555555431 0 0112
Q ss_pred cCCcchhhhhhccchhHHHHH-HHHHHHhh
Q psy2410 96 KKDSTYICETIRLPFNIASYS-LLIHIIAH 124 (198)
Q Consensus 96 ~~~~~~~~~~l~n~~Npk~~~-~~~~~~~~ 124 (198)
..-.......+.|||...++. ++|+++++
T Consensus 115 ~~f~~g~~~~l~NPKa~lf~~a~~~~fi~~ 144 (212)
T PRK10958 115 APFRRALILSLTNPKAILFFVSFFVQFVDP 144 (212)
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHhcccCC
Confidence 322234577888999988664 67777643
No 49
>cd00351 TS_Pyrimidine_HMase Thymidylate synthase and pyrimidine hydroxymethylase: Thymidylate synthase (TS) and deoxycytidylate hydroxymethylase (dCMP-HMase) are homologs that catalyze analogous alkylation of C5 of pyrimidine nucleotides. Both enzymes are involved in the biosynthesis of DNA precursors and are active as homodimers. However, they exhibit distinct pyrimidine base specificities and differ in the details of their catalyzed reactions. TS is biologically ubiquitous and catalyzes the conversion of dUMP and methylene-tetrahydrofolate (CH2THF) to dTMP and dihydrofolate (DHF). It also acts as a regulator of its own expression by binding and inactivating its own RNA. Due to its key role in the de novo pathway for thymidylate synthesis and, hence, DNA synthesis, it is one of the most conserved enzymes across species and phyla. TS is a well-recognized target for anticancer chemotherapy, as well as a valuable new target against infectious diseases. Interestingly, in several protozoa,
Probab=47.45 E-value=1 Score=37.15 Aligned_cols=48 Identities=54% Similarity=0.863 Sum_probs=42.2
Q ss_pred hhhhccchhHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHH
Q psy2410 103 CETIRLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQA 150 (198)
Q Consensus 103 ~~~l~n~~Npk~~~~~~~~~~~~~~~~~~~~v~~~~~~~vya~~~~~l 150 (198)
+.+++.|.|...++++..++++.++..++.+.+.+.++|+|..+.+++
T Consensus 167 D~~~g~~~N~~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~~~~~~ 214 (215)
T cd00351 167 DAFLGVPFNIASYALLTEMIARVTGLEPGEFIHTIGDAHIYENHLEQV 214 (215)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHhcCCEeEEEEEEEEEEEEehhhHhhh
Confidence 477889999999999999999999999888888889999999887654
No 50
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=47.09 E-value=1.1e+02 Score=25.33 Aligned_cols=25 Identities=0% Similarity=0.068 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2410 69 SILIFIKIFGIIWLMYTSFQMWCAS 93 (198)
Q Consensus 69 ~~~~~l~~~G~~yL~ylg~~~~r~~ 93 (198)
+-+..+++.|+++|.|.|.|+.-+.
T Consensus 150 ~r~p~L~~~~~~iL~~ig~kLil~~ 174 (215)
T TIGR03716 150 ERFPELETAAFLLIGWIGVKLLLET 174 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467899999999999999998754
No 51
>KOG3438|consensus
Probab=46.95 E-value=12 Score=27.34 Aligned_cols=13 Identities=23% Similarity=0.572 Sum_probs=10.9
Q ss_pred cCeEEeCCC-CCCC
Q psy2410 179 EDFQINSYN-PQKS 191 (198)
Q Consensus 179 ~~~~~~~y~-~~~~ 191 (198)
+++|++||+ |||.
T Consensus 41 peVefcGYtIPHPs 54 (105)
T KOG3438|consen 41 PEVEFCGYTIPHPS 54 (105)
T ss_pred CceEEEeccCCCCc
Confidence 479999999 7875
No 52
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=43.62 E-value=86 Score=27.64 Aligned_cols=54 Identities=22% Similarity=0.201 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2410 39 TLSLIIGQEIALVLIILAISEGAELLL--SSSSILIFIKIFGIIWLMYTSFQMWCA 92 (198)
Q Consensus 39 ~~~~~~G~~~g~~~~~~~~~~Gl~~l~--~~~~~~~~l~~~G~~yL~ylg~~~~r~ 92 (198)
.....+-...|.++-.+++.+..+.+. ..|.+..++-.++.+.|.|+|++..-+
T Consensus 77 ~~~~ilf~tiGLiiGLlia~l~~~pL~~~~ip~~~~ii~vi~t~il~y~G~~~~~k 132 (356)
T COG4956 77 PVTTILFGTIGLIIGLLIAVLLSSPLFLLPIPFISTIIPVILTIILAYFGFQLADK 132 (356)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhHHhhCCccHHHhHHHHHHHHHHHHHhhHHhhh
Confidence 333444444454444445555544443 468889999999999999999997643
No 53
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=42.97 E-value=2.2e+02 Score=24.52 Aligned_cols=79 Identities=22% Similarity=0.276 Sum_probs=36.2
Q ss_pred HHHHHhhccCchHHHH--HHHHHHhh---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHH---HHHHHH
Q psy2410 11 LFSIITSISPGPGNIL--TINHALRY---GWRKTLSLIIGQEIALVLIILAISEGAELLL-SSSSILIFIK---IFGIIW 81 (198)
Q Consensus 11 ~~~~~~~~~PGP~~~~--v~~~~~~~---G~r~~~~~~~G~~~g~~~~~~~~~~Gl~~l~-~~~~~~~~l~---~~G~~y 81 (198)
.+.+..-+.|=|.-++ +...++.. |.-..+.+++|.+++.....++++.+..... ..+.....++ ++.++.
T Consensus 182 ~igl~~Gl~PCpgAl~VLL~a~~lg~~~~Gi~~vlafslGtaltm~~vgll~~~~~r~~~~~~~~~~~~~~~~p~~s~~l 261 (279)
T PRK10019 182 LFGLTGGLIPCPAAITVLLICIQLKALTLGATLVLSFSIGLALTLVTVGVGAAISVQQAAKRWSGFNTLARRAPYFSSLL 261 (279)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4455555555554444 44444322 2333334444444444443333333322222 3344555556 666666
Q ss_pred HHHHHHHH
Q psy2410 82 LMYTSFQM 89 (198)
Q Consensus 82 L~ylg~~~ 89 (198)
.+-+|+.+
T Consensus 262 ~i~~G~~~ 269 (279)
T PRK10019 262 IGLVGVYM 269 (279)
T ss_pred HHHHHHHH
Confidence 66665543
No 54
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=42.85 E-value=30 Score=22.14 Aligned_cols=19 Identities=32% Similarity=0.592 Sum_probs=14.3
Q ss_pred HHHHHHHhhccCchHHHHH
Q psy2410 9 FLLFSIITSISPGPGNILT 27 (198)
Q Consensus 9 ~~~~~~~~~~~PGP~~~~v 27 (198)
.++..+++...|||....+
T Consensus 11 lv~~Gii~~~lPGpG~l~i 29 (53)
T PF09656_consen 11 LVVAGIIMLPLPGPGLLVI 29 (53)
T ss_pred HHHHHHHhhcCCCCcHHHH
Confidence 5566778889999987654
No 55
>PRK10739 putative antibiotic transporter; Provisional
Probab=39.66 E-value=2e+02 Score=23.24 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q psy2410 70 ILIFIKIFGIIWLMYTSFQMWCAS 93 (198)
Q Consensus 70 ~~~~l~~~G~~yL~ylg~~~~r~~ 93 (198)
=...+|++|++-|+.+|+++++.+
T Consensus 68 sl~afrIAGGilL~~ial~ml~~~ 91 (197)
T PRK10739 68 RTETVSISGGIILFLIAIKMIFPS 91 (197)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCC
Confidence 356788999999999999999765
No 56
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=34.24 E-value=2.5e+02 Score=22.72 Aligned_cols=21 Identities=14% Similarity=0.241 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q psy2410 73 FIKIFGIIWLMYTSFQMWCAS 93 (198)
Q Consensus 73 ~l~~~G~~yL~ylg~~~~r~~ 93 (198)
+-+|+|++-|+++|.+++++.
T Consensus 62 ~~~~ig~~iLi~iG~~mi~~~ 82 (206)
T TIGR02840 62 VTEILGAFILIAIGIWIIYNA 82 (206)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999988754
No 57
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=33.99 E-value=2.9e+02 Score=23.41 Aligned_cols=47 Identities=15% Similarity=0.086 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy2410 48 IALVLIILAISEGAELLL-SSSSILIFIKIFGIIWLMYTSFQMWCASI 94 (198)
Q Consensus 48 ~g~~~~~~~~~~Gl~~l~-~~~~~~~~l~~~G~~yL~ylg~~~~r~~~ 94 (198)
..|.+....+..|+.... ..+++-.+..++-++|+++.|++++|++.
T Consensus 155 ~~D~~~s~~vl~~~~~~~~g~~~~D~i~aiii~~~il~~~~~i~~~~~ 202 (299)
T PRK09509 155 QSDVMMNGAILLALGLSWYGWHRADALFALGIGIYILYSALRMGYEAV 202 (299)
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444433333432222 46788888999999999999999998753
No 58
>PF05661 DUF808: Protein of unknown function (DUF808); InterPro: IPR008526 This family consists of several bacterial proteins of unknown function.
Probab=33.27 E-value=1.3e+02 Score=26.05 Aligned_cols=25 Identities=8% Similarity=0.126 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2410 67 SSSILIFIKIFGIIWLMYTSFQMWC 91 (198)
Q Consensus 67 ~~~~~~~l~~~G~~yL~ylg~~~~r 91 (198)
.||+.+.+-.+|++||+|=|..-+.
T Consensus 83 aPw~itplLmlGG~yLcfEGaEKv~ 107 (295)
T PF05661_consen 83 APWAITPLLMLGGAYLCFEGAEKVW 107 (295)
T ss_pred HHHHHHHHHHHhHHHHHHhHHHHHH
Confidence 4999999999999999999987653
No 59
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=32.81 E-value=2.3e+02 Score=21.89 Aligned_cols=57 Identities=19% Similarity=0.168 Sum_probs=40.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-hH-HHHHHHHHHHHHHHHHHHHHHHhh
Q psy2410 35 GWRKTLSLIIGQEIALVLIILAISEGAELLL-S-SS-SILIFIKIFGIIWLMYTSFQMWCA 92 (198)
Q Consensus 35 G~r~~~~~~~G~~~g~~~~~~~~~~Gl~~l~-~-~~-~~~~~l~~~G~~yL~ylg~~~~r~ 92 (198)
.........+|..+++.+|........+... . .+ ... .+..+.++.++.+|+.++.+
T Consensus 131 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~i~~~~g~~li~~av~l~~~ 190 (191)
T PF01810_consen 131 SSTQFLVFILGIFLGSLLWFLLLALLGSRLRRKFSSRRIR-WINRISGLLLIGFAVYLLYS 190 (191)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHc
Confidence 3344566778888888888877777666554 2 23 344 88888888888999887753
No 60
>PF15654 Tox-WTIP: Toxin with a conserved tryptophan and TIP tripeptide motif
Probab=31.42 E-value=21 Score=22.86 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy2410 70 ILIFIKIFGIIWLMYTSFQMWCA 92 (198)
Q Consensus 70 ~~~~l~~~G~~yL~ylg~~~~r~ 92 (198)
...+..-+|++|++|=++|++-+
T Consensus 16 ~~~~va~~G~gY~iYR~vRmlPS 38 (54)
T PF15654_consen 16 AAKIVAGVGAGYLIYRGVRMLPS 38 (54)
T ss_pred hhhheeecchhhhhhhHHhhccc
Confidence 34555668999999999998754
No 61
>PF14851 FAM176: FAM176 family
Probab=29.58 E-value=79 Score=24.78 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=18.5
Q ss_pred hChHHHHHHHHHHHHHHHHHHHHHH
Q psy2410 34 YGWRKTLSLIIGQEIALVLIILAIS 58 (198)
Q Consensus 34 ~G~r~~~~~~~G~~~g~~~~~~~~~ 58 (198)
+-=|.|+.++.|+++|.++..++.+
T Consensus 18 ~PE~~aLYFv~gVC~GLlLtLcllV 42 (153)
T PF14851_consen 18 NPERFALYFVSGVCAGLLLTLCLLV 42 (153)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999776655443
No 62
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=28.37 E-value=19 Score=21.70 Aligned_cols=17 Identities=29% Similarity=0.292 Sum_probs=0.7
Q ss_pred HHHHHHHHhhccCchHH
Q psy2410 8 SFLLFSIITSISPGPGN 24 (198)
Q Consensus 8 ~~~~~~~~~~~~PGP~~ 24 (198)
...++|+....+|||.-
T Consensus 8 vialtClggLasPgPvp 24 (43)
T PF03487_consen 8 VIALTCLGGLASPGPVP 24 (43)
T ss_dssp ---------------S-
T ss_pred HHHHHHhcccCCCCCCC
Confidence 35677899999999964
No 63
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=28.01 E-value=3.9e+02 Score=23.00 Aligned_cols=58 Identities=19% Similarity=0.147 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy2410 38 KTLSLIIGQEIALVLIILAISEGAELLL-SSSSILIFIKIFGIIWLMYTSFQMWCASIN 95 (198)
Q Consensus 38 ~~~~~~~G~~~g~~~~~~~~~~Gl~~l~-~~~~~~~~l~~~G~~yL~ylg~~~~r~~~~ 95 (198)
.++.+-.=..-.|.+-.+.+..|+.... ..|++-.+..++=++|++|.|++.+|...+
T Consensus 147 ~aL~Ada~h~~sD~~ts~~~lvgl~~~~~g~~~lD~i~a~~I~~~Il~~~~~~~~~s~~ 205 (304)
T COG0053 147 QALIADALHHRSDVLTSLAVLVGLLGSLLGWPWLDPLAALLISLYILKTGFRLFKESVN 205 (304)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566778888888888877444 569999999999999999999999997643
No 64
>PRK10062 hypothetical protein; Provisional
Probab=27.42 E-value=3.2e+02 Score=23.83 Aligned_cols=25 Identities=8% Similarity=0.093 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2410 67 SSSILIFIKIFGIIWLMYTSFQMWC 91 (198)
Q Consensus 67 ~~~~~~~l~~~G~~yL~ylg~~~~r 91 (198)
.||+.+.+-.+|++||+|=|..-+.
T Consensus 83 aPw~itpLLMlGG~yLcfEGaEKv~ 107 (303)
T PRK10062 83 IPWAITPLLMIGGAFLCFEGVEKVL 107 (303)
T ss_pred HHHHHHHHHHHhHHHHHHhhHHHHH
Confidence 4999999999999999999987654
No 65
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=27.35 E-value=4.2e+02 Score=23.14 Aligned_cols=83 Identities=18% Similarity=0.279 Sum_probs=50.9
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHhhChH-HHHHHHHHHHHHHHHHHHHHHHHHHH------HHh---h----HHHHHHH
Q psy2410 9 FLLFSIITSISPGPGNILTINHALRYGWR-KTLSLIIGQEIALVLIILAISEGAEL------LLS---S----SSILIFI 74 (198)
Q Consensus 9 ~~~~~~~~~~~PGP~~~~v~~~~~~~G~r-~~~~~~~G~~~g~~~~~~~~~~Gl~~------l~~---~----~~~~~~l 74 (198)
-..+.+..-+-|=|.-+.|+.-+...|.- .|+..++-..+|..+- ++++++-+ ... + ...-.++
T Consensus 204 ~~~~~l~~GLrPCpgAi~VLlfal~~gl~~~Gil~VlamS~GtalT--vs~lA~~av~ak~~a~~~~g~~~~~~~~~~~~ 281 (303)
T COG2215 204 QWLFGLTGGLRPCPGAIFVLLFALSLGLYTLGILSVLAMSIGTALT--VSALALLAVTAKNTAVRLSGFRTLAKRISYIV 281 (303)
T ss_pred HHHHHHHhcCccCcHHHHHHHHHHHhchHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 34556677788888888888777766543 4555555555554433 22222111 111 1 1234588
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q psy2410 75 KIFGIIWLMYTSFQMWCAS 93 (198)
Q Consensus 75 ~~~G~~yL~ylg~~~~r~~ 93 (198)
+++|+..++|+|+..+...
T Consensus 282 ~l~~gli~l~~g~~~l~~~ 300 (303)
T COG2215 282 SLLGGLIGLYFGLHLLLGS 300 (303)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988653
No 66
>TIGR00802 nico high-affinity nickel-transporter, HoxN/HupN/NixA family. This family is found in both Gram-negative and Gram-positive bacteria. The functionally characterized members of the family catalyze uptake of either Ni2+ or Co2+ in a proton motive force-dependent process. Topological analyses with the HoxN Ni2+ transporter of Ralstonia eutropha (Alcaligenes eutrophus) suggest that it possesses 8 TMSs with its N- and C-termini in the cytoplasm.
Probab=25.31 E-value=1e+02 Score=26.57 Aligned_cols=51 Identities=14% Similarity=0.242 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHH----HHHHHHHHHHHHHHH
Q psy2410 37 RKTLSLIIGQEIALVLIILAISEGAELLL-SSSSILI----FIKIFGIIWLMYTSF 87 (198)
Q Consensus 37 r~~~~~~~G~~~g~~~~~~~~~~Gl~~l~-~~~~~~~----~l~~~G~~yL~ylg~ 87 (198)
+.|+...+|+.....+..++.+.+.+.+. ..+.+.. +=..+.+.||+-+|.
T Consensus 37 ~~G~~fslGHs~vV~l~~l~ia~~~~~~~~~~~~~~~igg~iGt~VS~~FL~~ig~ 92 (280)
T TIGR00802 37 GVGFFFSLGHSTVVVLATVLIAVASALLTERLDGLHEIGGLIGTLVSALFLLIIAL 92 (280)
T ss_pred eeeeeecCccHHHHHHHHHHHHHHHHHHHhhchhHHhccceeeHHHHHHHHHHHHH
Confidence 46788899998888877777777766665 4555655 444667788888874
No 67
>PF11351 DUF3154: Protein of unknown function (DUF3154); InterPro: IPR021497 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=24.06 E-value=3.1e+02 Score=20.39 Aligned_cols=20 Identities=15% Similarity=-0.061 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy2410 72 IFIKIFGIIWLMYTSFQMWC 91 (198)
Q Consensus 72 ~~l~~~G~~yL~ylg~~~~r 91 (198)
....++|.+++.|.|.|.+-
T Consensus 98 ~lw~Llg~~vlgy~~~Rs~e 117 (123)
T PF11351_consen 98 PLWWLLGAGVLGYFGARSQE 117 (123)
T ss_pred HHHHHHHHHHhhhHHHhhHH
Confidence 34566889999999988763
No 68
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=23.50 E-value=2.5e+02 Score=19.12 Aligned_cols=56 Identities=23% Similarity=0.209 Sum_probs=30.7
Q ss_pred HHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHH
Q psy2410 25 ILTINHALRYGWRKTLSLIIGQEIALVLIILAISEGAELLL-SSSSILIFIKIFGIIWLM 83 (198)
Q Consensus 25 ~~v~~~~~~~G~r~~~~~~~G~~~g~~~~~~~~~~Gl~~l~-~~~~~~~~l~~~G~~yL~ 83 (198)
+..+.-+.+++ ++-+...+|..+|..+...+++..-..+. ..| ...+++++++-.+
T Consensus 19 l~t~~La~~~~-~~~~~V~~G~~~al~~~~~lav~~G~~l~~~ip--~~~i~~~~~~lFl 75 (78)
T PF01169_consen 19 LATIALAARYP-RNPWPVFAGATLALALATGLAVLLGSWLASRIP--ERYIKWVAGALFL 75 (78)
T ss_pred HHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHH
Confidence 34444455543 56778888998887777666654323332 222 2345555554433
No 69
>TIGR02611 conserved hypothetical protein TIGR02611. Members of this family are Actinobacterial putative proteins of about 150 amino acids in length with three apparent transmembrane helix and an unusual motif with consensus sequence PGPGW.
Probab=22.95 E-value=95 Score=23.38 Aligned_cols=19 Identities=42% Similarity=0.651 Sum_probs=14.2
Q ss_pred HHHHHHHhhccCchHHHHH
Q psy2410 9 FLLFSIITSISPGPGNILT 27 (198)
Q Consensus 9 ~~~~~~~~~~~PGP~~~~v 27 (198)
.++..+++...|||..+.+
T Consensus 35 ~~~~Gi~ml~lPGpG~l~i 53 (121)
T TIGR02611 35 VLIVGIITIPLPGPGWLTI 53 (121)
T ss_pred HHHHHHHHhccCCchHHHH
Confidence 4556777888999987654
No 70
>KOG3360|consensus
Probab=22.88 E-value=92 Score=22.53 Aligned_cols=36 Identities=22% Similarity=0.430 Sum_probs=23.7
Q ss_pred HHHHHHHHhcCCCC---CCeeeecCCCCCCCCCcccCeEE
Q psy2410 147 LDQARKQLLRNPGS---LPNLTILCKPKSSLDYNFEDFQI 183 (198)
Q Consensus 147 ~~~lr~~L~r~p~~---~~~l~i~~~~~~~~d~~~~~~~~ 183 (198)
.+.+++||+++..+ ..+.++. +.|.|.+++-+||++
T Consensus 59 vd~mk~wl~~~gsP~s~I~~~ef~-n~kei~~~~y~~F~I 97 (98)
T KOG3360|consen 59 VDEMKEWLLTRGSPVSAIDRAEFS-NQKEISRYTYKDFSI 97 (98)
T ss_pred HHHHHHHHHhcCChhHheeeeeec-ccceecccccceeee
Confidence 34567788744443 3445554 457899998888876
No 71
>COG5521 Predicted integral membrane protein [Function unknown]
Probab=22.50 E-value=4.9e+02 Score=22.19 Aligned_cols=75 Identities=8% Similarity=0.138 Sum_probs=44.6
Q ss_pred hccCchHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2410 17 SISPGPGNILTINHALRYGWRKTLSLIIGQEIALVLIILAISEGAELLLSSSSILIFIKIFGIIWLMYTSFQMWCAS 93 (198)
Q Consensus 17 ~~~PGP~~~~v~~~~~~~G~r~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~l~~~G~~yL~ylg~~~~r~~ 93 (198)
++.-|..+++-+..--+--.-+.+.-+++.++-..-+-.+++.-+|.+.+++.....++-+|. ++++.|-..|.+
T Consensus 193 ivagg~sffL~iTKrSrlfsiasFkE~~~l~lnclalP~laa~algff~qd~ttim~vqs~g~--vLml~w~FyKTr 267 (275)
T COG5521 193 IVAGGASFFLWITKRSRLFSIASFKEAASLALNCLALPALAAAALGFFHQDLTTIMMVQSCGV--VLMLSWAFYKTR 267 (275)
T ss_pred HHHhhhhheeeeehhhhhhhHHhHHHHHHHHHHhhhhHHHHHHHHHHHhhcHHHHHHHHHHHH--HHHHHHHHhhhc
Confidence 334444444444333333334566667777777777777777777777777777666666664 445555444443
No 72
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=22.24 E-value=27 Score=27.33 Aligned_cols=13 Identities=38% Similarity=0.744 Sum_probs=11.0
Q ss_pred cccC--eEEeC-CCCC
Q psy2410 177 NFED--FQINS-YNPQ 189 (198)
Q Consensus 177 ~~~~--~~~~~-y~~~ 189 (198)
+|+| ||++| |.|+
T Consensus 100 nPndL~fWleDiYTPG 115 (159)
T PF06789_consen 100 NPNDLEFWLEDIYTPG 115 (159)
T ss_pred CCccchHHHhcccCCc
Confidence 7777 99999 8885
No 73
>PRK03557 zinc transporter ZitB; Provisional
Probab=21.82 E-value=5.1e+02 Score=22.18 Aligned_cols=54 Identities=7% Similarity=0.031 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2410 40 LSLIIGQEIALVLIILAISEGAELL--LSSSSILIFIKIFGIIWLMYTSFQMWCAS 93 (198)
Q Consensus 40 ~~~~~G~~~g~~~~~~~~~~Gl~~l--~~~~~~~~~l~~~G~~yL~ylg~~~~r~~ 93 (198)
+....=....|.+-.+.+..|.... ...+++-.+..++-++|++|.|++++|++
T Consensus 153 l~a~~~h~~~D~l~s~~vlv~~~~~~~~g~~~~Dpi~~ilis~~i~~~~~~l~~~~ 208 (312)
T PRK03557 153 VRAAALHVLGDLLGSVGAIIAALIIIWTGWTPADPILSILVSVLVLRSAWRLLKES 208 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334455665544444443222 24677778889999999999999999875
No 74
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=21.74 E-value=3e+02 Score=28.45 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHHHHHHH
Q psy2410 24 NILTINHALRYGWRKTLSLIIGQEIALVLIIL 55 (198)
Q Consensus 24 ~~~v~~~~~~~G~r~~~~~~~G~~~g~~~~~~ 55 (198)
.+++++.|+++++|.+++.+++.....++..+
T Consensus 62 ~Ll~lA~gL~rr~r~Aw~~~~~~~~~~~~~~l 93 (1094)
T PRK02983 62 VLALLAAALRRRKRAAWWVLLAYLVLAALLNV 93 (1094)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999887766555443
No 75
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=21.30 E-value=4.1e+02 Score=22.45 Aligned_cols=24 Identities=8% Similarity=0.224 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q psy2410 70 ILIFIKIFGIIWLMYTSFQMWCAS 93 (198)
Q Consensus 70 ~~~~l~~~G~~yL~ylg~~~~r~~ 93 (198)
=+..++++|.++|.|.|.|+.-..
T Consensus 189 r~p~l~~~~~~iL~~IG~kli~~~ 212 (254)
T COG0861 189 RHPTLKYLALVILLFIGVKLILEG 212 (254)
T ss_pred HchHHHHHHHHHHHHHHHHHHHhh
Confidence 346788999999999999998654
No 76
>PF06442 DHFR_2: R67 dihydrofolate reductase; InterPro: IPR009159 Dihydrofolate reductase (DHFR) (1.5.1.3 from EC) catalyses the NADPH-dependent reduction of dihydrofolate to tetrahydrofolate, an essential step in de novo synthesis both of glycine and of purines and deoxythymidine phosphate (the precursors of DNA synthesis) [], and important also in the conversion of deoxyuridine monophosphate to deoxythymidine monophosphate. Although DHFR is found ubiquitously in prokaryotes and eukaryotes, and is found in all dividing cells, maintaining levels of fully reduced folate coenzymes, the catabolic steps are still not well understood []. Bacterial species possesses distinct DHFR enzymes (based on their pattern of binding diaminoheterocyclic molecules), but mammalian DHFRs are highly similar []. The active site is situated in the N-terminal half of the sequence, which includes a conserved Pro-Trp dipeptide; the tryptophan has been shown [] to be involved in the binding of substrate by the enzyme. Its central role in DNA precursor synthesis, coupled with its inhibition by antagonists such as trimethoprim and methotrexate, which are used as anti-bacterial or anti-cancer agents, has made DHFR a target of anticancer chemotherapy. However, resistance has developed against some drugs, as a result of changes in DHFR itself []. This entry represents a plasmid-encoded DHFR which shows a high level of resistance to the antibiotic trimethoprim. It is a homotetramer with an unusual pore, which contains the active site, passing through the middle of the molecule []. Its structure is unrelated to that of chromosomal DHFRs.; GO: 0004146 dihydrofolate reductase activity, 0042493 response to drug, 0055114 oxidation-reduction process; PDB: 1VIF_A 3SFM_A 2P4T_A 2GQV_A 2RK2_A 2RH2_A 2RK1_A 1VIE_A.
Probab=21.02 E-value=47 Score=22.28 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=17.0
Q ss_pred CCCCcccCeEEeCCCCCCCCC-cccc
Q psy2410 173 SLDYNFEDFQINSYNPQKSIY-APIA 197 (198)
Q Consensus 173 ~~d~~~~~~~~~~y~~~~~i~-~~~a 197 (198)
-+|++||.+-+|+=.|..+++ ||++
T Consensus 47 ~t~ltpegyavese~hpgsvqiyp~~ 72 (78)
T PF06442_consen 47 CTKLTPEGYAVESESHPGSVQIYPVA 72 (78)
T ss_dssp --SS-SSEEEEEESSSTT-EEEEEGG
T ss_pred eccccccceeeecccCCCcEEEEehH
Confidence 357899999999877777777 5765
No 77
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=20.07 E-value=5.7e+02 Score=21.99 Aligned_cols=79 Identities=14% Similarity=0.264 Sum_probs=42.5
Q ss_pred HHHHhhccCchHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhh--HHHHHHHHHHHHHHHHHHH
Q psy2410 12 FSIITSISPGPGNILTINHALRY--GWRKTLSLIIGQEIALVLIILAI-SEGAELLLSS--SSILIFIKIFGIIWLMYTS 86 (198)
Q Consensus 12 ~~~~~~~~PGP~~~~v~~~~~~~--G~r~~~~~~~G~~~g~~~~~~~~-~~Gl~~l~~~--~~~~~~l~~~G~~yL~ylg 86 (198)
..+.=.+-||=..+++.+.-+.+ ..|+++...+...++-...+++. ..++...... +.....+..+.++.++.+|
T Consensus 23 yG~~HAlgPGHGKavi~sYlv~~~~~~~~a~~lgl~~~l~hta~~lv~~~~~~~l~~~~~~~~~~~~le~~S~~lii~lG 102 (279)
T PRK10019 23 LGALHGLEPGHSKTMMAAFIIAIKGTIKQAVMLGLAATISHTAVVWLIAFGGMYLSRRFTAQSAEPWLQLISAVIIISTA 102 (279)
T ss_pred HHHHHhcCCCcchHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 34445678998888777755543 44455544444444432221111 1112211122 3366788888888888887
Q ss_pred HHHH
Q psy2410 87 FQMW 90 (198)
Q Consensus 87 ~~~~ 90 (198)
..++
T Consensus 103 l~ll 106 (279)
T PRK10019 103 FWMF 106 (279)
T ss_pred HHHH
Confidence 6554
No 78
>PF02411 MerT: MerT mercuric transport protein; InterPro: IPR003457 MerT is an mercuric transport integral membrane protein and is responsible for transport of the Hg2+ iron from periplasmic MerP (also part of the transport system) to mercuric reductase (MerA).; GO: 0015097 mercury ion transmembrane transporter activity, 0015694 mercury ion transport, 0016020 membrane
Probab=20.06 E-value=3.7e+02 Score=19.89 Aligned_cols=56 Identities=9% Similarity=0.110 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2410 38 KTLSLIIGQEIALVLIILAISEGAELL-----LSSSSILIFIKIFGIIWLMYTSFQMWCAS 93 (198)
Q Consensus 38 ~~~~~~~G~~~g~~~~~~~~~~Gl~~l-----~~~~~~~~~l~~~G~~yL~ylg~~~~r~~ 93 (198)
.|...+++..+..+.=.++..+|++.. ...+.....+-.+..+.|.|--|+..|.+
T Consensus 13 ~g~laAv~aS~CCi~Pllll~lGvsgaw~~~ls~lepyRp~fi~~tl~~lg~a~~~~yr~~ 73 (116)
T PF02411_consen 13 GGVLAAVLASLCCIGPLLLLSLGVSGAWISNLSWLEPYRPYFIALTLLFLGYAFWRLYRPR 73 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHccc
Confidence 455556665555555555666665432 12334444444455555655556666654
Done!