Query psy2410
Match_columns 198
No_of_seqs 244 out of 2012
Neff 7.3
Searched_HMMs 29240
Date Sat Aug 17 00:18:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2410.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2410hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f28_A Thymidylate synthase; b 99.8 3.5E-21 1.2E-25 163.3 -2.8 95 104-198 203-297 (297)
2 3ed7_A Tsase, TS, thymidylate 99.8 2.8E-21 9.6E-26 163.2 -4.0 96 103-198 200-295 (295)
3 2g8o_A TS, tsase, thymidylate 99.8 6.5E-21 2.2E-25 159.5 -2.6 96 103-198 169-264 (264)
4 1bkp_A Thymidylate synthase A; 99.8 6.7E-21 2.3E-25 160.3 -3.1 96 103-198 183-278 (278)
5 3uwl_A TS, tsase, thymidylate 99.8 6.9E-21 2.3E-25 163.0 -3.3 96 103-198 220-315 (315)
6 1j3k_C Bifunctional dihydrofol 99.8 7.9E-21 2.7E-25 162.5 -3.4 96 103-198 233-328 (328)
7 1hw4_A TS, thymidylate synthas 99.8 8.3E-21 2.8E-25 163.4 -3.7 96 103-198 260-355 (355)
8 3qj7_A TS, tsase, thymidylate 99.8 7.3E-21 2.5E-25 158.7 -4.0 95 103-198 170-264 (264)
9 2aaz_A TS, tsase, thymidylate 99.8 1.1E-20 3.8E-25 161.2 -3.4 95 104-198 220-317 (317)
10 4dq1_A TS, tsase, thymidylate 99.8 9.6E-21 3.3E-25 161.3 -4.1 95 103-198 227-321 (321)
11 3kgb_A Thymidylate synthase 1/ 99.7 1.5E-20 5.1E-25 158.8 -4.5 95 103-197 197-293 (294)
12 3ix6_A TS, tsase, thymidylate 99.7 2E-20 6.8E-25 162.3 -5.2 96 103-198 265-360 (360)
13 3v8h_A TS, tsase, thymidylate 99.7 1.9E-20 6.5E-25 160.1 -6.0 96 103-198 221-327 (327)
14 3nrr_A Dihydrofolate reductase 99.7 1E-19 3.4E-24 164.7 -3.1 96 103-198 420-515 (515)
15 3hj3_A Chain A, crystal struct 99.7 1E-19 3.5E-24 164.8 -3.5 96 103-198 426-521 (521)
16 3irm_A Bifunctional dihydrofol 99.7 1.2E-19 4.1E-24 164.3 -3.8 96 103-198 426-521 (521)
17 3qg2_A Bifunctional dihydrofol 99.7 2E-19 7E-24 164.5 -3.1 96 103-198 513-608 (608)
18 1tis_A Thymidylate synthase; t 99.7 2.4E-20 8.2E-25 157.3 -12.0 96 103-198 179-286 (286)
19 1b5e_A Protein (deoxycytidylat 92.7 0.0012 4.1E-08 54.4 -7.4 58 103-160 171-235 (246)
20 2rh2_A Dihydrofolate reductase 24.0 29 0.00099 21.2 1.1 24 174-197 32-56 (62)
No 1
>1f28_A Thymidylate synthase; beta-sheet, protein-inhibitor complex, transferase; HET: UMP F89; 1.90A {Pneumocystis carinii} SCOP: d.117.1.1 PDB: 1ci7_A*
Probab=99.78 E-value=3.5e-21 Score=163.26 Aligned_cols=95 Identities=39% Similarity=0.743 Sum_probs=92.2
Q ss_pred hhhccchhHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeecCCCCCCCCCcccCeEE
Q psy2410 104 ETIRLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQI 183 (198)
Q Consensus 104 ~~l~n~~Npk~~~~~~~~~~~~~~~~~~~~v~~~~~~~vya~~~~~lr~~L~r~p~~~~~l~i~~~~~~~~d~~~~~~~~ 183 (198)
.+++.|.|+..++++..++++.++..++.++|+++++|+|..+.++++++|+|+|+..|++.|||++|||+||++|||+|
T Consensus 203 ~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~e~v~~qL~R~p~~~P~l~i~~~~~~i~d~~~~Df~l 282 (297)
T 1f28_A 203 MGLGVPFNIASYALLTCMIAHVCDLDPGDFIHVMGDCHIYKDHIEALQQQLTRSPRPFPTLSLNRSITDIEDFTLDDFNI 282 (297)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEHHHHHHHHTGGGSCCCCCCEEEECSCCCSGGGCCGGGEEE
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhCCeeEEEEEEeeeeEeeHhHHHHHHHHHhcCCCCCCEeeeCCCCCchhhCChhHEEE
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCccccC
Q psy2410 184 NSYNPQKSIYAPIAI 198 (198)
Q Consensus 184 ~~y~~~~~i~~~~a~ 198 (198)
+||+|||+||+||||
T Consensus 283 ~~Y~~hp~Ik~~~av 297 (297)
T 1f28_A 283 QNYHPYETIKMKMSI 297 (297)
T ss_dssp ESCCCCCCCCCCCCC
T ss_pred eCCCCCCCCcccccC
Confidence 999999999999997
No 2
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} SCOP: d.117.1.1 PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 4gyh_A 4h1i_A 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* ...
Probab=99.78 E-value=2.8e-21 Score=163.18 Aligned_cols=96 Identities=50% Similarity=0.791 Sum_probs=89.1
Q ss_pred hhhhccchhHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeecCCCCCCCCCcccCeE
Q psy2410 103 CETIRLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQ 182 (198)
Q Consensus 103 ~~~l~n~~Npk~~~~~~~~~~~~~~~~~~~~v~~~~~~~vya~~~~~lr~~L~r~p~~~~~l~i~~~~~~~~d~~~~~~~ 182 (198)
+.+++.|.|...++++..++++.++..++.++|+++++|+|..+.++++++|+|+|+..|+++|||++|||+||+.|||+
T Consensus 200 D~~lG~PfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nH~e~~~~qL~R~p~~~P~l~i~~~~~~i~df~~~Df~ 279 (295)
T 3ed7_A 200 DMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRILRKVEKIDDFKAEDFQ 279 (295)
T ss_dssp ETTTHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHHHTTSCCCCCCEEEECSCCCSGGGCCGGGEE
T ss_pred hhHHhhhhhHHHHHHHHHHHHHHhCCeeeEEEEEEEEEEecHHHHHHHHHHhcCCCCCCCEEEECCCCCChhcCCHhHEE
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCccccC
Q psy2410 183 INSYNPQKSIYAPIAI 198 (198)
Q Consensus 183 ~~~y~~~~~i~~~~a~ 198 (198)
|+||+|||+||+||||
T Consensus 280 l~~Y~~hp~Ik~~~aV 295 (295)
T 3ed7_A 280 IEGYNPHPTIKMEMAV 295 (295)
T ss_dssp EESCCCCCCCCC----
T ss_pred EECCcCCCccCccccC
Confidence 9999999999999997
No 3
>2g8o_A TS, tsase, thymidylate synthase; methyltransferase, DUMP, antifolate, high-resolution, ternar complex, beta sheet, alpha/beta protein; HET: CXM UMP CB3; 1.30A {Escherichia coli} SCOP: d.117.1.1 PDB: 1aob_A* 1f4c_A* 1f4e_A* 1f4f_A* 1jtq_A* 1jtu_A* 1jut_A* 1kce_A* 1kzi_A* 1tls_A* 1tsn_A* 1f4b_A* 2bbq_A* 2ftq_A* 2a9w_A* 2kce_A* 3b9h_A* 3bhl_A* 3bhr_A* 3tms_A ...
Probab=99.77 E-value=6.5e-21 Score=159.52 Aligned_cols=96 Identities=56% Similarity=1.004 Sum_probs=92.8
Q ss_pred hhhhccchhHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeecCCCCCCCCCcccCeE
Q psy2410 103 CETIRLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQ 182 (198)
Q Consensus 103 ~~~l~n~~Npk~~~~~~~~~~~~~~~~~~~~v~~~~~~~vya~~~~~lr~~L~r~p~~~~~l~i~~~~~~~~d~~~~~~~ 182 (198)
+.+++.|.|...++++..++++.++..++.++|.++++|+|..+.++++++|+|+|+..|++.|||++|||+||++|||+
T Consensus 169 D~~lG~pfNi~syalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~~~v~~qL~r~p~~~P~l~i~~~~~~~~d~~~~df~ 248 (264)
T 2g8o_A 169 DVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIFDYRFEDFE 248 (264)
T ss_dssp ETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHHTSCCCCCCEEEECCCCSSTTCCCGGGEE
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHCCeeeEEEEEEeeeEeccchHHHHHHHhccCCCCCCeeecCCCCCchhcCChhHEE
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCccccC
Q psy2410 183 INSYNPQKSIYAPIAI 198 (198)
Q Consensus 183 ~~~y~~~~~i~~~~a~ 198 (198)
|+||+|||+||+||||
T Consensus 249 l~~Y~~hp~ik~~~av 264 (264)
T 2g8o_A 249 IEGYDPHPGIKAPVAI 264 (264)
T ss_dssp EESCCCCCCCCCCCCC
T ss_pred EeCCCCCCCCcccccC
Confidence 9999999999999997
No 4
>1bkp_A Thymidylate synthase A; methyltransferase, DTMP synthase; 1.70A {Bacillus subtilis} SCOP: d.117.1.1 PDB: 1bko_A 1bsf_A 1bsp_A 1b02_A*
Probab=99.77 E-value=6.7e-21 Score=160.30 Aligned_cols=96 Identities=30% Similarity=0.587 Sum_probs=92.9
Q ss_pred hhhhccchhHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeecCCCCCCCCCcccCeE
Q psy2410 103 CETIRLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQ 182 (198)
Q Consensus 103 ~~~l~n~~Npk~~~~~~~~~~~~~~~~~~~~v~~~~~~~vya~~~~~lr~~L~r~p~~~~~l~i~~~~~~~~d~~~~~~~ 182 (198)
+.+++.|.|...++++..++++.++..++.++|.++++|+|..+.++++++|+|+|+..|+++|||++|||+||+.|||+
T Consensus 183 D~~lG~pfNi~syalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~e~v~~qL~r~p~~~P~l~i~~~~~~~~d~~~~Df~ 262 (278)
T 1bkp_A 183 DMALGNPFNVFQYNVLQRMIAQVTGYELGEYIFNIGDCHVYTRHIDNLKIQMEREQFEAPELWINPEVKDFYDFTIDDFK 262 (278)
T ss_dssp ETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHHHHHSCCCCCCEEEECTTCCSGGGCCGGGEE
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHhCCeeEEEEEEEEeEEEcHHHHHHHHHHhcCCCCCCCEEEECCCCCchhhCCHhHEE
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCccccC
Q psy2410 183 INSYNPQKSIYAPIAI 198 (198)
Q Consensus 183 ~~~y~~~~~i~~~~a~ 198 (198)
|+||+|||+||+||||
T Consensus 263 l~~Y~~hp~ik~~~av 278 (278)
T 1bkp_A 263 LINYKHGDKLLFEVAV 278 (278)
T ss_dssp EESCCCCCCCCCCCBC
T ss_pred EeCCCCCCcCcccccC
Confidence 9999999999999997
No 5
>3uwl_A TS, tsase, thymidylate synthase; methyltransferase, transferase; HET: CME FOZ; 2.07A {Enterococcus faecalis} PDB: 3ik0_A* 1lcb_A* 1lce_A* 1lca_A* 1thy_A* 1tsl_A* 1tsm_A* 2tdm_A* 3bnz_A* 3byx_A* 3bz0_A* 3c06_A* 3c0a_A* 1nje_A* 3ijz_A* 3ik1_A* 4tms_A 1tsy_A* 1tsz_A 2g86_A* ...
Probab=99.77 E-value=6.9e-21 Score=162.97 Aligned_cols=96 Identities=48% Similarity=0.829 Sum_probs=91.4
Q ss_pred hhhhccchhHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeecCCCCCCCCCcccCeE
Q psy2410 103 CETIRLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQ 182 (198)
Q Consensus 103 ~~~l~n~~Npk~~~~~~~~~~~~~~~~~~~~v~~~~~~~vya~~~~~lr~~L~r~p~~~~~l~i~~~~~~~~d~~~~~~~ 182 (198)
+.+++.|.|...++++..++++.++..++.++|.++++|+|..+.++++++|+|+|+..|+++|||++|+|+||++|||+
T Consensus 220 D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gd~HIY~nh~e~~~~ql~R~p~~~P~L~in~~~~~i~d~~~~Df~ 299 (315)
T 3uwl_A 220 DVFLGVPFNIASYALLTHLIAHETGLEVGEFVHTLGDAHLYQNHVEQMQEQLSREVRSFPTLVLNPDKASVFDFDMEDIK 299 (315)
T ss_dssp ETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHHTSCCCCCCEEEECTTCCCGGGCCGGGEE
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhCCccceEEEEeeeeEeeHhHHHHHHHHhCCCCCCCCeEEECCCCCccccCCHHHEE
Confidence 47888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCccccC
Q psy2410 183 INSYNPQKSIYAPIAI 198 (198)
Q Consensus 183 ~~~y~~~~~i~~~~a~ 198 (198)
|+||+|||+||+||||
T Consensus 300 l~~Y~~hp~Ik~~~AV 315 (315)
T 3uwl_A 300 VEGYDPHPTIKAPIAV 315 (315)
T ss_dssp EESCCCCCCCCCCC--
T ss_pred EeCCCCCCCCCcCCcC
Confidence 9999999999999997
No 6
>1j3k_C Bifunctional dihydrofolate reductase-thymidylate synthase; oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A {Plasmodium falciparum} SCOP: d.117.1.1 PDB: 1j3i_C* 1j3j_C* 3dg8_C* 3dga_C*
Probab=99.77 E-value=7.9e-21 Score=162.51 Aligned_cols=96 Identities=35% Similarity=0.556 Sum_probs=92.9
Q ss_pred hhhhccchhHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeecCCCCCCCCCcccCeE
Q psy2410 103 CETIRLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQ 182 (198)
Q Consensus 103 ~~~l~n~~Npk~~~~~~~~~~~~~~~~~~~~v~~~~~~~vya~~~~~lr~~L~r~p~~~~~l~i~~~~~~~~d~~~~~~~ 182 (198)
+.+++.|.|+..++++..++++.++..++.++|+++++|+|..+.++++++|+|+|+..|+++|||++|||+||++|||+
T Consensus 233 D~~LG~PfNiasyalL~~miAq~~Gle~Gefih~igdaHIY~nhie~v~~qL~R~P~~~P~l~i~~~~~~i~df~~~Df~ 312 (328)
T 1j3k_C 233 DLGLGVPFNIASYSIFTHMIAQVCNLQPAQFIHVLGNAHVYNNHIDSLKIQLNRIPYPFPTLKLNPDIKNIEDFTISDFT 312 (328)
T ss_dssp ETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHTTSCCCCCCEEEECTTCCSGGGCCGGGEE
T ss_pred hHHHhhcchHHHHHHHHHHHHHHHCCeeeEEEEEEeeeEeeHHHHHHHHHHhcCCCCCCCeeEeCCCCCchhhCCHhHEE
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCccccC
Q psy2410 183 INSYNPQKSIYAPIAI 198 (198)
Q Consensus 183 ~~~y~~~~~i~~~~a~ 198 (198)
|+||+|||+||+||||
T Consensus 313 l~~Y~~hp~Ik~~vAV 328 (328)
T 1j3k_C 313 IQNYVHHEKISMDMAA 328 (328)
T ss_dssp EECCCCCCCCCCCSCC
T ss_pred EeCCCCCCcCcccccC
Confidence 9999999999999997
No 7
>1hw4_A TS, thymidylate synthase; methyltransferase, transferase; HET: CME; 2.06A {Homo sapiens} SCOP: d.117.1.1 PDB: 3n5e_A 3n5g_A*
Probab=99.76 E-value=8.3e-21 Score=163.40 Aligned_cols=96 Identities=50% Similarity=0.791 Sum_probs=90.2
Q ss_pred hhhhccchhHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeecCCCCCCCCCcccCeE
Q psy2410 103 CETIRLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQ 182 (198)
Q Consensus 103 ~~~l~n~~Npk~~~~~~~~~~~~~~~~~~~~v~~~~~~~vya~~~~~lr~~L~r~p~~~~~l~i~~~~~~~~d~~~~~~~ 182 (198)
+.+++.|.|+..|+++..++++.++..++.++|+++++|+|..+.++++++|+|+|+..|+++|||++|||+||++|||+
T Consensus 260 D~~LGvPfNIasyalLt~miAq~~Gle~GefvhtigdaHIY~nHie~vkeqL~ReP~~~P~L~in~~~~~i~df~~eDf~ 339 (355)
T 1hw4_A 260 DMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRILRKVEKIDDFKAEDFQ 339 (355)
T ss_dssp ETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHTTSCCCCCCEEEECSCCCSGGGCCGGGEE
T ss_pred hhhhhhcchHHHHHHHHHHHHHHHCCeeEEEEEEEEEeEeeHHHHHHHHHHHhcCCCCCCeeEeCCCCCchhhCChhHEE
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCccccC
Q psy2410 183 INSYNPQKSIYAPIAI 198 (198)
Q Consensus 183 ~~~y~~~~~i~~~~a~ 198 (198)
|+||+|||+||+||||
T Consensus 340 l~~Y~~hp~Ik~~vAV 355 (355)
T 1hw4_A 340 IEGYNPHPTIKMEMAV 355 (355)
T ss_dssp EESCCCCCCCCCC---
T ss_pred EeCCCCCCcCcccccC
Confidence 9999999999999997
No 8
>3qj7_A TS, tsase, thymidylate synthase; thymidilate synthase, structural genomics, TB structural GEN consortium, TBSGC, transferase; HET: UMP SPM; 2.50A {Mycobacterium tuberculosis} SCOP: d.117.1.1
Probab=99.76 E-value=7.3e-21 Score=158.69 Aligned_cols=95 Identities=47% Similarity=0.943 Sum_probs=88.9
Q ss_pred hhhhccchhHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeecCCCCCCCCCcccCeE
Q psy2410 103 CETIRLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQ 182 (198)
Q Consensus 103 ~~~l~n~~Npk~~~~~~~~~~~~~~~~~~~~v~~~~~~~vya~~~~~lr~~L~r~p~~~~~l~i~~~~~~~~d~~~~~~~ 182 (198)
+.+++.|.|...|+++..++++.++..++.++|+++++|+|..+.++++++|+|+|+..|+++| |++|||+||+.|||+
T Consensus 170 D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~e~~~~qL~R~p~~~P~l~i-~~~~~~~d~~~~Df~ 248 (264)
T 3qj7_A 170 DLFLGVPFNIASYALLTHMMAAQAGLSVGEFIWTGGDCHIYDNHVEQVRLQLSREPRPYPKLLL-ADRDSIFEYTYEDIV 248 (264)
T ss_dssp ETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHHHHTSCCCCCCEEEE-ECCSSGGGCCGGGEE
T ss_pred hHHHHhhccHHHHHHHHHHHHHhcCCeeeEEEEEEEEEEEEHHHHHHHHHHhcCCCCCCCEEEe-CCCCChhcCCHhHEE
Confidence 4778899999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred EeCCCCCCCCCccccC
Q psy2410 183 INSYNPQKSIYAPIAI 198 (198)
Q Consensus 183 ~~~y~~~~~i~~~~a~ 198 (198)
|+||+|||+||+||||
T Consensus 249 l~~Y~~hp~ik~~~av 264 (264)
T 3qj7_A 249 VKNYDPHPAIKAPVAV 264 (264)
T ss_dssp EESCCCCCCCCCC---
T ss_pred EECCcCCCccCccccC
Confidence 9999999999999997
No 9
>2aaz_A TS, tsase, thymidylate synthase; methyl transferase, nucleotide biosynthesis, transferase; HET: UMP CB3; 2.08A {Filobasidiella neoformans}
Probab=99.76 E-value=1.1e-20 Score=161.23 Aligned_cols=95 Identities=34% Similarity=0.555 Sum_probs=92.0
Q ss_pred hhhccchhHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeecCC---CCCCCCCcccC
Q psy2410 104 ETIRLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCK---PKSSLDYNFED 180 (198)
Q Consensus 104 ~~l~n~~Npk~~~~~~~~~~~~~~~~~~~~v~~~~~~~vya~~~~~lr~~L~r~p~~~~~l~i~~~---~~~~~d~~~~~ 180 (198)
.+++.|.|+..++++..++++.++..++.++|+++++|+|..+.++++++|+|+|+..|+++|||+ +|||+||++||
T Consensus 220 ~~LGvPfNiasyalL~~miA~~~gl~~G~f~h~~gdaHIY~nH~e~v~~qL~R~p~~~P~l~i~~~~~~~~~i~d~~~eD 299 (317)
T 2aaz_A 220 LGLGVPFNIASYALLTHMIALITDTEPHEFILQMGDAHVYRDHVEPLKTQLEREPRDFPKLKWARSKEEIGDIDGFKVED 299 (317)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHHHHTSCCCCCCEEEESSCHHHHCSTTCCCGGG
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhCCeeEEEEEEeeeeEeeHhHHHHHHHHHhcCCCCCCeEEECCccCCCCchhhCChhH
Confidence 678889999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred eEEeCCCCCCCCCccccC
Q psy2410 181 FQINSYNPQKSIYAPIAI 198 (198)
Q Consensus 181 ~~~~~y~~~~~i~~~~a~ 198 (198)
|+|+||+|||+||+||||
T Consensus 300 f~l~~Y~~hp~Ik~~vaV 317 (317)
T 2aaz_A 300 FVVEGYKPWGKIDMKMSA 317 (317)
T ss_dssp EEEECCCCCCCCCCCCCC
T ss_pred EEEeCCCCCCcCcccccC
Confidence 999999999999999997
No 10
>4dq1_A TS, tsase, thymidylate synthase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: UMP; 2.71A {Staphylococcus aureus}
Probab=99.76 E-value=9.6e-21 Score=161.25 Aligned_cols=95 Identities=47% Similarity=0.760 Sum_probs=87.9
Q ss_pred hhhhccchhHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeecCCCCCCCCCcccCeE
Q psy2410 103 CETIRLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQ 182 (198)
Q Consensus 103 ~~~l~n~~Npk~~~~~~~~~~~~~~~~~~~~v~~~~~~~vya~~~~~lr~~L~r~p~~~~~l~i~~~~~~~~d~~~~~~~ 182 (198)
+.+++.|.|...|+++..++++.++..++.++|+++++|+|..+.++++++|+|+|+..|+++|||+ |||+||+.|||+
T Consensus 227 D~~lG~PfNiasyalL~~miAq~~Gl~~G~fih~~gdaHIY~nH~e~~~~qL~R~p~~~P~l~in~~-~~i~df~~eDf~ 305 (321)
T 4dq1_A 227 DIFLGVPFNIASYALLTHLIAKECGLEVGEFVHTFGDAHIYSNHIDAIQTQLARESFNPPTLKINSD-KSIFDINYEDLE 305 (321)
T ss_dssp ETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEETTSHHHHHHHHHSCCCCCCEEEECCC-SCGGGCCGGGEE
T ss_pred hHHHHhhccHHHHHHHHHHHHHHhCCcceEEEEEEEEEEEeHHHHHHHHHHhCCCCCCCCEEEECCC-CCcccCCHhHEE
Confidence 4778899999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred EeCCCCCCCCCccccC
Q psy2410 183 INSYNPQKSIYAPIAI 198 (198)
Q Consensus 183 ~~~y~~~~~i~~~~a~ 198 (198)
|+||+|||+||+||||
T Consensus 306 l~~Y~~hp~Ik~~vAV 321 (321)
T 4dq1_A 306 IVDYESHPAIKAPIAV 321 (321)
T ss_dssp EESCCCCCCCCC----
T ss_pred EeCCcCCCccCccccC
Confidence 9999999999999997
No 11
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynt transferase, structural genomics; 2.20A {Encephalitozoon cuniculi} SCOP: d.117.1.1
Probab=99.75 E-value=1.5e-20 Score=158.83 Aligned_cols=95 Identities=39% Similarity=0.720 Sum_probs=84.0
Q ss_pred hhhhccchhHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeecCC--CCCCCCCcccC
Q psy2410 103 CETIRLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCK--PKSSLDYNFED 180 (198)
Q Consensus 103 ~~~l~n~~Npk~~~~~~~~~~~~~~~~~~~~v~~~~~~~vya~~~~~lr~~L~r~p~~~~~l~i~~~--~~~~~d~~~~~ 180 (198)
+.+++.|.|+..++++..++++.++..++.++|+++++|+|..+.++++++|+|+|+..|+++|||+ +|||+||+.||
T Consensus 197 D~~lG~PfNiasyalL~~miA~~~gl~~G~f~h~~gdaHIY~nH~e~~~~qL~R~p~~~P~l~i~~~~~~~~i~df~~~D 276 (294)
T 3kgb_A 197 DMGLGVPFNIASYSLLTILVAHLTGLQPGEFVHFLGDAHVYLDHVDSLRQQIQRPPRAFPKLFVSPKGPRTEPEHFQYED 276 (294)
T ss_dssp ETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHTTSCCCCCCEEEECCSSCCCSGGGCCGGG
T ss_pred hhhHHhhccHHHHHHHHHHHHHHhCCeeEEEEEEEEeEEecHHHHHHHHHHhcCCCCCCCEEEECCcCCCCchhcCCHhH
Confidence 4778899999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred eEEeCCCCCCCCCcccc
Q psy2410 181 FQINSYNPQKSIYAPIA 197 (198)
Q Consensus 181 ~~~~~y~~~~~i~~~~a 197 (198)
|+|+||+|||+||+|||
T Consensus 277 f~l~~Y~~hp~Ik~~~a 293 (294)
T 3kgb_A 277 FELVGYDPHPAIKMNMS 293 (294)
T ss_dssp EEEESCCCC--------
T ss_pred EEEeCCcCCCcCCCCCC
Confidence 99999999999999997
No 12
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=99.74 E-value=2e-20 Score=162.34 Aligned_cols=96 Identities=48% Similarity=0.771 Sum_probs=80.1
Q ss_pred hhhhccchhHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeecCCCCCCCCCcccCeE
Q psy2410 103 CETIRLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQ 182 (198)
Q Consensus 103 ~~~l~n~~Npk~~~~~~~~~~~~~~~~~~~~v~~~~~~~vya~~~~~lr~~L~r~p~~~~~l~i~~~~~~~~d~~~~~~~ 182 (198)
+.+++.|.|...|+++..++++.++..++.++|+++++|+|..+.++++++|+|+|+..|+++|||++|||+||+.|||+
T Consensus 265 D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~e~~~~qL~R~p~~~P~l~i~~~~~~~~d~~~~Df~ 344 (360)
T 3ix6_A 265 DIFLGVPFNIASYALLTMMIAQVTGLKPGEFIHTLGDAHIYSNHFEQARLQLTRTPKKLPVMHINPDVKDLFAFRFEDFR 344 (360)
T ss_dssp ETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHHHTTSCCCCCCEEEECTTCCSGGGCCGGGEE
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHhCCcceEEEEEEeeeEEeHHHHHHHHHHhcCCCCCCCEEEECCCCCChhcCCHhHEE
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCccccC
Q psy2410 183 INSYNPQKSIYAPIAI 198 (198)
Q Consensus 183 ~~~y~~~~~i~~~~a~ 198 (198)
|+||+|||+||+||||
T Consensus 345 l~~Y~~hp~ik~~~av 360 (360)
T 3ix6_A 345 LDGYEADPTIKAPIAV 360 (360)
T ss_dssp EEC-------------
T ss_pred EECCcCCCcCCccccC
Confidence 9999999999999997
No 13
>3v8h_A TS, tsase, thymidylate synthase; ssgcid, structural genomics, seattle S genomics center for infectious disease, transferase; HET: CIT; 1.65A {Burkholderia thailandensis}
Probab=99.73 E-value=1.9e-20 Score=160.09 Aligned_cols=96 Identities=28% Similarity=0.440 Sum_probs=83.6
Q ss_pred hhhhccchhHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeecCCCCCCCCC------
Q psy2410 103 CETIRLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDY------ 176 (198)
Q Consensus 103 ~~~l~n~~Npk~~~~~~~~~~~~~~~~~~~~v~~~~~~~vya~~~~~lr~~L~r~p~~~~~l~i~~~~~~~~d~------ 176 (198)
+.+++.|.|+..++++..++++.++..++.++|+++++|+|..+.++++++|+|+|+..|+++|||++|||+||
T Consensus 221 D~~lG~PfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nHie~~~eqL~R~p~~~P~l~i~~~~~~i~d~~~y~~~ 300 (327)
T 3v8h_A 221 DVGLGTPFNLAEGAALLTLVGRLTGYSPRWFTYFIGDAHIYENQLDMLKQQLEREPFESPRLELAERVPDYAKTGKYEPQ 300 (327)
T ss_dssp ETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHHHHHSCCCCCCEEEECTTSCCHHHHCCCCTT
T ss_pred hhHhHhhccHHHHHHHHHHHHHHhCCeeeEEEEEEeeeEeehhHHHHHHHHhCCCCCCCCEEEECCCCCCHHHhhccccc
Confidence 36788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -----cccCeEEeCCCCCCCCCccccC
Q psy2410 177 -----NFEDFQINSYNPQKSIYAPIAI 198 (198)
Q Consensus 177 -----~~~~~~~~~y~~~~~i~~~~a~ 198 (198)
++|||+|+||+|||+||+||||
T Consensus 301 w~~~~~~~Df~l~~Y~~hp~Ik~~~AV 327 (327)
T 3v8h_A 301 WLERVEPSDFTLVGYRHHEPLSAPMAV 327 (327)
T ss_dssp HHHHCCGGGEEEESCCCC---------
T ss_pred ccccCCccceEEECCCCCCcCCCCccC
Confidence 7999999999999999999997
No 14
>3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A {Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A*
Probab=99.72 E-value=1e-19 Score=164.65 Aligned_cols=96 Identities=29% Similarity=0.568 Sum_probs=92.8
Q ss_pred hhhhccchhHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeecCCCCCCCCCcccCeE
Q psy2410 103 CETIRLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQ 182 (198)
Q Consensus 103 ~~~l~n~~Npk~~~~~~~~~~~~~~~~~~~~v~~~~~~~vya~~~~~lr~~L~r~p~~~~~l~i~~~~~~~~d~~~~~~~ 182 (198)
+.+++.|.|...|+++..++++.++..++.++|+++++|+|..+.++++++|+|+|+..|+++|||++|||+||+.|||+
T Consensus 420 D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~~~~~~ql~R~p~~~P~l~i~~~~~~~~~~~~~df~ 499 (515)
T 3nrr_A 420 DLGLGVPFNIASYSILTAMVAQVCGLGLGEFVHNLADAHIYVDHVDAVTTQIARIPHPFPRLRLNPDIRNIEDFTIDDIV 499 (515)
T ss_dssp ETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHHTSCCCCCCEEEECTTCCSGGGCCGGGEE
T ss_pred hHHHhhhccHHHHHHHHHHHHHHhCCeeeEEEEEEEeEEEcHHHHHHHHHHhcCCCCCCCEEEECCCCCChhcCCHhHEE
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCccccC
Q psy2410 183 INSYNPQKSIYAPIAI 198 (198)
Q Consensus 183 ~~~y~~~~~i~~~~a~ 198 (198)
|+||+|||+||+||||
T Consensus 500 l~~Y~~~p~ik~~~av 515 (515)
T 3nrr_A 500 VEDYVSHPPIPMAMSA 515 (515)
T ss_dssp EESCCCCCCCCCCCCC
T ss_pred EECCcCCCccCCCccC
Confidence 9999999999999997
No 15
>3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover, non-active site, oxidoreductase; HET: UMP CB3 MTX NDP; 2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A* 3dl5_A* 3dl6_A* 2oip_A*
Probab=99.72 E-value=1e-19 Score=164.76 Aligned_cols=96 Identities=34% Similarity=0.580 Sum_probs=92.6
Q ss_pred hhhhccchhHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeecCCCCCCCCCcccCeE
Q psy2410 103 CETIRLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQ 182 (198)
Q Consensus 103 ~~~l~n~~Npk~~~~~~~~~~~~~~~~~~~~v~~~~~~~vya~~~~~lr~~L~r~p~~~~~l~i~~~~~~~~d~~~~~~~ 182 (198)
+.+++.|.|...|+++..++++.++..++.++|+++++|+|..+.++++++|+|+|+..|+++|||++|||+||+.|||+
T Consensus 426 D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~~~~~~ql~R~p~~~P~l~i~~~~~~~~d~~~~df~ 505 (521)
T 3hj3_A 426 DLGLGSPFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKEQLSRTPRPFPQLKFKRKVENIEDFKWEDIE 505 (521)
T ss_dssp BTTTHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHHHTTSCCCCCCEEEESSCCSSGGGCCGGGEE
T ss_pred hhhhhhcccHHHHHHHHHHHHHHhCCcceEEEEEeeeeEEehhHHHHHHHHhcCCCCCCCEEEECCCCCChhcCCHhHEE
Confidence 36788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCccccC
Q psy2410 183 INSYNPQKSIYAPIAI 198 (198)
Q Consensus 183 ~~~y~~~~~i~~~~a~ 198 (198)
|+||+|||+||+||||
T Consensus 506 l~~Y~~hp~ik~~~av 521 (521)
T 3hj3_A 506 LIGYYPYPTIKMDMAV 521 (521)
T ss_dssp EESCCCCCCCCCCCCC
T ss_pred EECCcCCCccCCCccC
Confidence 9999999999999997
No 16
>3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS antifolate complex, methyltransfe multifunctional enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB: 3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A* 3kjs_A*
Probab=99.72 E-value=1.2e-19 Score=164.33 Aligned_cols=96 Identities=36% Similarity=0.598 Sum_probs=92.1
Q ss_pred hhhhccchhHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeecCCCCCCCCCcccCeE
Q psy2410 103 CETIRLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQ 182 (198)
Q Consensus 103 ~~~l~n~~Npk~~~~~~~~~~~~~~~~~~~~v~~~~~~~vya~~~~~lr~~L~r~p~~~~~l~i~~~~~~~~d~~~~~~~ 182 (198)
+.+++.|.|...|+++..++++.++..++.++|+++++|+|..+.++++++|+|+|+..|+++|||++|||+||+.|||+
T Consensus 426 D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~~~~~~ql~R~p~~~P~l~i~~~~~~~~~~~~~df~ 505 (521)
T 3irm_A 426 DMGLGVPFNIASYALLTILIAKATGLRPGELVHTLGDAHVYSNHVEPCNEQLKRVPRAFPYLVFRREREFLEDYEEGDME 505 (521)
T ss_dssp ETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHTTSCCCCCCEEEESCCCSBGGGCCGGGEE
T ss_pred hhhhhhcccHHHHHHHHHHHHHHhCCcceEEEEEEEEEEEehhHHHHHHHHhcCCCCCCCEEEECCCCCChhcCCHhHEE
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCccccC
Q psy2410 183 INSYNPQKSIYAPIAI 198 (198)
Q Consensus 183 ~~~y~~~~~i~~~~a~ 198 (198)
|+||+|||+||+||||
T Consensus 506 l~~Y~~hp~ik~~~av 521 (521)
T 3irm_A 506 VIDYAPYPPISMKMAV 521 (521)
T ss_dssp EESCCCCCCCSCCCC-
T ss_pred EECCcCCCccCCCccC
Confidence 9999999999999997
No 17
>3qg2_A Bifunctional dihydrofolate reductase-thymidylate; pyrimethamine, antifolate resistance, oxidoreductase, transferase; HET: CP6 NDP UMP; 2.30A {Plasmodium falciparum} PDB: 3jsu_A* 4dp3_A* 4dph_A* 3qgt_A* 3um8_A* 4dpd_A* 3um5_A* 3um6_A*
Probab=99.71 E-value=2e-19 Score=164.47 Aligned_cols=96 Identities=35% Similarity=0.556 Sum_probs=92.9
Q ss_pred hhhhccchhHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeecCCCCCCCCCcccCeE
Q psy2410 103 CETIRLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQ 182 (198)
Q Consensus 103 ~~~l~n~~Npk~~~~~~~~~~~~~~~~~~~~v~~~~~~~vya~~~~~lr~~L~r~p~~~~~l~i~~~~~~~~d~~~~~~~ 182 (198)
+.+++.|.|...|+++..++++.++..++.++|+++++|+|..+.++++++|+|+|+..|+++|||++|||+||+.|||+
T Consensus 513 D~~lG~PfNiasyalL~~miA~~~gl~~G~fih~~gdaHIY~nH~e~~~~qL~R~p~~~P~l~i~~~~~~i~df~~~Df~ 592 (608)
T 3qg2_A 513 DLGLGVPFNIASYSIFTHMIAQVCNLQPAQFIHVLGNAHVYNNHIDSLKIQLNRIPYPFPTLKLNPDIKNIEDFTISDFT 592 (608)
T ss_dssp ETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHHTSCCCCCCEEEECTTCCSGGGCCGGGEE
T ss_pred hhhhhhhccHHHHHHHHHHHHHHhCCeeeEEEEEeeeeEEeHhHHHHHHHHhcCCCCCCCEEEECCCCCChhcCCHhHEE
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCccccC
Q psy2410 183 INSYNPQKSIYAPIAI 198 (198)
Q Consensus 183 ~~~y~~~~~i~~~~a~ 198 (198)
|+||+|||+||+||||
T Consensus 593 l~~Y~~hp~Ik~~~av 608 (608)
T 3qg2_A 593 IQNYVHHEKISMDMAA 608 (608)
T ss_dssp EESCCCCCCCCSSCCC
T ss_pred EeCCcCCCccCcCccC
Confidence 9999999999999997
No 18
>1tis_A Thymidylate synthase; transferase(methyltransferase); 2.70A {Enterobacteria phage T4} SCOP: d.117.1.1
Probab=99.68 E-value=2.4e-20 Score=157.28 Aligned_cols=96 Identities=39% Similarity=0.635 Sum_probs=92.4
Q ss_pred hhhhccchhHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeecCC------------C
Q psy2410 103 CETIRLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCK------------P 170 (198)
Q Consensus 103 ~~~l~n~~Npk~~~~~~~~~~~~~~~~~~~~v~~~~~~~vya~~~~~lr~~L~r~p~~~~~l~i~~~------------~ 170 (198)
+.+++.|.|...++++..++++.++..++.++|+++++|+|..+.++++++|+|+|+..|++.|||+ +
T Consensus 179 D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~e~v~~qL~R~p~~~P~l~i~~~~~~~~~~~~~~~~ 258 (286)
T 1tis_A 179 DVFLGLPFNIASYATLVHIVAKMCNLIPGDLIFSGGNTHIYMNHVEQCKEILRREPKELCELVISGLPYKFRYLSTKEQL 258 (286)
T ss_dssp ETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEESSCCTTTGGGSSCCCCSCCCCEECCCCGGGGGSCHHHHH
T ss_pred hHHHhhcchHHHHHHHHHHHHHHHCCeeEEEEEEEeeeEeeHHHHHHHHHHHcCCCCCCCeEEECCcccccccccccccC
Confidence 4788899999999999999999999999999999999999999999999999999999999999998 8
Q ss_pred CCCCCCcccCeEEeCCCCCCCCCccccC
Q psy2410 171 KSSLDYNFEDFQINSYNPQKSIYAPIAI 198 (198)
Q Consensus 171 ~~~~d~~~~~~~~~~y~~~~~i~~~~a~ 198 (198)
|||+||++|||+|+||+|||+||+||||
T Consensus 259 ~~~~d~~~~Df~l~~Y~~hp~ik~~~av 286 (286)
T 1tis_A 259 KYVLKLRPKDFVLNNYVSHPPIKGKMAV 286 (286)
T ss_dssp HHHHTCCGGGEECSSCCCCCCCCCCCCC
T ss_pred CchhcCCceeEEEeCCCCCCcCCcCccC
Confidence 9999999999999999999999999997
No 19
>1b5e_A Protein (deoxycytidylate hydroxymethylase); DNTP synthesizing complex, transferase; HET: DCM; 1.60A {Enterobacteria phage T4} SCOP: d.117.1.1 PDB: 1b49_A* 1b5d_A*
Probab=92.73 E-value=0.0012 Score=54.45 Aligned_cols=58 Identities=19% Similarity=0.243 Sum_probs=53.8
Q ss_pred hhhhccchhHH-----HHHHHHHHHhhh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy2410 103 CETIRLPFNIA-----SYSLLIHIIAHE--TGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGS 160 (198)
Q Consensus 103 ~~~l~n~~Npk-----~~~~~~~~~~~~--~~~~~~~~v~~~~~~~vya~~~~~lr~~L~r~p~~ 160 (198)
+.+++.|.|.. .++++..++++. ++..++.++|.++++|+|..+.++++++|+|.|+.
T Consensus 171 D~~lG~pfNi~~~~~~syalL~~miA~~~~~gl~~G~~~h~~gdaHIY~nh~e~~~~~L~r~~~~ 235 (246)
T 1b5e_A 171 DVVFGFRNDYAWQKYVLDKLVSDLNAGDSTRQYKAGSIIWNVGSLHVYSRHFYLVDHWWKTGETH 235 (246)
T ss_dssp ETTHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEEEEEEEEEEEEEEEGGGHHHHHHHHHHCCSC
T ss_pred hhhhhccchHHHhhhHHHHHHHHHHhhhhccCCceeEEEEEEEeEEEcHHHHHHHHHHHhhCCcc
Confidence 47788999999 999999999999 99999999999999999999999999999998874
No 20
>2rh2_A Dihydrofolate reductase type 2; folate metabolism, plasmid-encoded R67 DHFR, TMP-resistant DHFR, antibiotic resistance, methotrexate resistance; 0.96A {Escherichia coli} SCOP: b.34.4.1 PDB: 1vif_A* 1vie_A 2gqv_A 2rk1_A* 2rk2_A* 3sfm_A 2p4t_A*
Probab=24.04 E-value=29 Score=21.21 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=18.8
Q ss_pred CCCcccCeEEeCCCCCCCCC-cccc
Q psy2410 174 LDYNFEDFQINSYNPQKSIY-APIA 197 (198)
Q Consensus 174 ~d~~~~~~~~~~y~~~~~i~-~~~a 197 (198)
.+++||.+-+|+=.|-.+++ |||+
T Consensus 32 t~ltpegyaveseshpgsvqiyp~~ 56 (62)
T 2rh2_A 32 TNLTPEGYAVESEAHPGSVQIYPVA 56 (62)
T ss_dssp CSSCSSEEEEEESSSTTCEEEEEGG
T ss_pred ccccccceEEecccCCCcEEEEEhh
Confidence 45789999999877777777 5775
Done!