RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2410
(198 letters)
>d1tswa_ d.117.1.1 (A:) Thymidylate synthase {Lactobacillus casei
[TaxId: 1582]}
Length = 316
Score = 107 bits (268), Expect = 6e-29
Identities = 47/121 (38%), Positives = 71/121 (58%), Gaps = 3/121 (2%)
Query: 81 WLMYTSFQMWCASINKKDSTYICET---IRLPFNIASYSLLIHIIAHETGLKVGDFIWTG 137
+T +Q + Y + +PFNIASY+LL H++AHE GL+VG+FI T
Sbjct: 196 PPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECGLEVGEFIHTF 255
Query: 138 GDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIA 197
GD HLY+NHLDQ ++QL R P P L + D++ +D ++ +Y+P +I AP+A
Sbjct: 256 GDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLNYDPYPAIKAPVA 315
Query: 198 I 198
+
Sbjct: 316 V 316
>d1j3kc_ d.117.1.1 (C:) Bifunctional enzyme dihydrofolate
reductase-thymidylate synthase, TS domain {Malaria
parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 326
Score = 100 bits (251), Expect = 2e-26
Identities = 34/92 (36%), Positives = 49/92 (53%)
Query: 106 IRLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLT 165
+ +PFNIASYS+ H+IA L+ FI G+ H+Y NH+D + QL R P P L
Sbjct: 234 LGVPFNIASYSIFTHMIAQVCNLQPAQFIHVLGNAHVYNNHIDSLKIQLNRIPYPFPTLK 293
Query: 166 ILCKPKSSLDYNFEDFQINSYNPQKSIYAPIA 197
+ K+ D+ DF I +Y + I +A
Sbjct: 294 LNPDIKNIEDFTISDFTIQNYVHHEKISMDMA 325
>d1f28a_ d.117.1.1 (A:) Thymidylate synthase {Pneumocystis carinii
[TaxId: 4754]}
Length = 295
Score = 99.7 bits (248), Expect = 3e-26
Identities = 37/91 (40%), Positives = 57/91 (62%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL +IAH L GDFI GDCH+Y +H++ ++QL R+P P L++
Sbjct: 205 VPFNIASYALLTCMIAHVCDLDPGDFIHVMGDCHIYKDHIEALQQQLTRSPRPFPTLSLN 264
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
D+ +DF I +Y+P ++I ++I
Sbjct: 265 RSITDIEDFTLDDFNIQNYHPYETIKMKMSI 295
>d1hvya_ d.117.1.1 (A:) Thymidylate synthase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 288
Score = 99.8 bits (248), Expect = 3e-26
Identities = 48/91 (52%), Positives = 61/91 (67%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R P P L IL
Sbjct: 198 VPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRIL 257
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
K + D+ EDFQI YNP +I +A+
Sbjct: 258 RKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 288
>d2g8oa1 d.117.1.1 (A:1-264) Thymidylate synthase {Escherichia coli
[TaxId: 562]}
Length = 264
Score = 97.8 bits (243), Expect = 9e-26
Identities = 65/180 (36%), Positives = 90/180 (50%), Gaps = 12/180 (6%)
Query: 27 TINHALRYGWRKTLSLIIGQEIALVLIILAISEGAELLLSSSSILIFIKIFGIIWLM--- 83
+ WR + + ++ + + S I++ G + M
Sbjct: 89 DLGPVYGKQWRAWPTPDGRHIDQITTVLNQLKNDPD----SRRIIVSAWNVGELDKMALA 144
Query: 84 --YTSFQMWCASINKKDSTYI--CETI-RLPFNIASYSLLIHIIAHETGLKVGDFIWTGG 138
+ FQ + A Y C+ LPFNIASY+LL+H++A + L+VGDF+WTGG
Sbjct: 145 PCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGG 204
Query: 139 DCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
D HLY NH+DQ QL R P LP L I KP+S DY FEDF+I Y+P I AP+AI
Sbjct: 205 DTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>d1seja2 d.117.1.1 (A:233-521) Bifunctional enzyme dihydrofolate
reductase-thymidylate synthase, TS domain
{Cryptosporidium hominis [TaxId: 237895]}
Length = 289
Score = 97.4 bits (242), Expect = 2e-25
Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 9/141 (6%)
Query: 67 SSSILIFIKIFGIIWLMYTSFQMWCASINKKDSTYICETIRLP---------FNIASYSL 117
++ + M + + + + FNIASY++
Sbjct: 149 DRRHILTAWNPSALSQMALPPCHVLSQYYVTNDNCLSCNLYQRSCDLGLGSPFNIASYAI 208
Query: 118 LIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYN 177
L ++A G + G+ GD H+Y NHL Q ++QL R P P L K ++ D+
Sbjct: 209 LTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKEQLSRTPRPFPQLKFKRKVENIEDFK 268
Query: 178 FEDFQINSYNPQKSIYAPIAI 198
+ED ++ Y P +I +A+
Sbjct: 269 WEDIELIGYYPYPTIKMDMAV 289
>d1bkpa_ d.117.1.1 (A:) Thymidylate synthase {Bacillus subtilis
[TaxId: 1423]}
Length = 278
Score = 91.0 bits (225), Expect = 6e-23
Identities = 29/91 (31%), Positives = 51/91 (56%)
Query: 108 LPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
PFN+ Y++L +IA TG ++G++I+ GDCH+Y H+D + Q+ R P L I
Sbjct: 188 NPFNVFQYNVLQRMIAQVTGYELGEYIFNIGDCHVYTRHIDNLKIQMEREQFEAPELWIN 247
Query: 168 CKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 198
+ K D+ +DF++ +Y + +A+
Sbjct: 248 PEVKDFYDFTIDDFKLINYKHGDKLLFEVAV 278
>d1tisa_ d.117.1.1 (A:) Thymidylate synthase {Bacteriophage T4
[TaxId: 10665]}
Length = 286
Score = 82.9 bits (204), Expect = 5e-20
Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 12/105 (11%)
Query: 106 IRLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLT 165
+ LPFNIASY+ L+HI+A L GD I++GG+ H+Y+NH++Q ++ L R P L L
Sbjct: 182 LGLPFNIASYATLVHIVAKMCNLIPGDLIFSGGNTHIYMNHVEQCKEILRREPKELCELV 241
Query: 166 ILCKP------------KSSLDYNFEDFQINSYNPQKSIYAPIAI 198
I P K L +DF +N+Y I +A+
Sbjct: 242 ISGLPYKFRYLSTKEQLKYVLKLRPKDFVLNNYVSHPPIKGKMAV 286
>d1b5ea_ d.117.1.1 (A:) dCMP hydroxymethylase {Bacteriophage T4
[TaxId: 10665]}
Length = 241
Score = 63.9 bits (155), Expect = 3e-13
Identities = 9/58 (15%), Positives = 15/58 (25%), Gaps = 7/58 (12%)
Query: 108 LPFNIASYSLLIHIIAHE-------TGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNP 158
+ A ++ + + K G IW G H+Y H
Sbjct: 176 FRNDYAWQKYVLDKLVSDLNAGDSTRQYKAGSIIWNVGSLHVYSRHFYLVDHWWKTGE 233
>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 117
Score = 34.2 bits (78), Expect = 0.002
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 122 IAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPK 171
IAH+ GL+ GD + +L QAR ++ + P
Sbjct: 54 IAHQAGLEYGDQLLEFNGINLRSATEQQAR-LIIGQQCDTITILAQYNPH 102
>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 82
Score = 31.1 bits (70), Expect = 0.017
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 123 AHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
A GL I ++ Q +L G++ +TI+
Sbjct: 36 AARNGLLTEHNICEINGQNVIGLKDSQIAD-ILSTSGTVVTITIM 79
>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 104
Score = 30.8 bits (69), Expect = 0.033
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 123 AHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
A GL++GDF+ ++ Q ++R G+ + ++
Sbjct: 56 AWRAGLRMGDFLIEVNGQNVVKVGHRQVV-NMIRQGGNTLMVKVV 99
>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 27.9 bits (62), Expect = 0.24
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 123 AHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKP 170
A GL+ GD + + D+A K L + G +TI +P
Sbjct: 38 ASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRP 85
>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 88
Score = 26.8 bits (59), Expect = 0.60
Identities = 8/45 (17%), Positives = 13/45 (28%), Gaps = 1/45 (2%)
Query: 123 AHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
A G+ G + D + + PG+ LT
Sbjct: 29 AANAGVPKGVVVTK-VDDRPINSADALVAAVRSKAPGATVALTFQ 72
>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor
protein-binding family A member 1 (APBA1, X11) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 26.7 bits (59), Expect = 0.63
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 123 AHETGLKVGD-FIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
A G++VG I G + H +L N ++ +
Sbjct: 33 AERGGVRVGHRIIEINGQSVVATPHEKIV--HILSNAVGEIHMKTM 76
>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF
{Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 26.3 bits (58), Expect = 0.92
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 123 AHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
A + GL GD + ++ Q +R + L ++
Sbjct: 40 AEKAGLLAGDRLVEVNGENVEKETHQQVV-SRIRAALNAVRLLVV 83
>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 26.4 bits (58), Expect = 1.1
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 122 IAHETGL-KVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKS 172
A + G ++GD + + +L ++A L+N + L + KP S
Sbjct: 43 AAQKDGRLQIGDRLLAVNNTNLQDVRHEEAV-ASLKNTSDMVYLKV-AKPGS 92
>d1nr9a_ d.177.1.1 (A:) Putative isomerase YcgM {Escherichia coli
[TaxId: 562]}
Length = 221
Score = 27.1 bits (59), Expect = 1.3
Identities = 11/65 (16%), Positives = 21/65 (32%)
Query: 73 FIKIFGIIWLMYTSFQMWCASINKKDSTYICETIRLPFNIASYSLLIHIIAHETGLKVGD 132
+ G I + +++ + + I LI ++ LK GD
Sbjct: 128 SCPLSGFIPAAEFTGDPQNTTLSLSVNGEQRQQGTTADMIHKIVPLIAYMSKFFTLKAGD 187
Query: 133 FIWTG 137
+ TG
Sbjct: 188 VVLTG 192
>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal
processing protease {Algae (Scenedesmus obliquus)
[TaxId: 3088]}
Length = 92
Score = 25.7 bits (56), Expect = 1.8
Identities = 9/45 (20%), Positives = 14/45 (31%)
Query: 123 AHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
A + G + GD I T + L L S + +
Sbjct: 32 AEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLH 76
>d1gtta1 d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degradation
bifunctional isomerase/decarboxylase HpcE {Escherichia
coli [TaxId: 562]}
Length = 213
Score = 26.4 bits (57), Expect = 1.8
Identities = 9/61 (14%), Positives = 19/61 (31%)
Query: 77 FGIIWLMYTSFQMWCASINKKDSTYICETIRLPFNIASYSLLIHIIAHETGLKVGDFIWT 136
F I + +I + + + + + L+ ++ L GD I
Sbjct: 115 FCPIGETVALSNVDNLTIYTEINGRPADHWNTADLQRNAAQLLSALSEFATLNPGDAILL 174
Query: 137 G 137
G
Sbjct: 175 G 175
>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 104
Score = 25.6 bits (56), Expect = 1.9
Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 125 ETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSL 174
+ L+ D + + A Q LR G + + + K +
Sbjct: 53 DGLLQENDRVVMVNGTPMEDVLHSFAV-QQLRKSGKIAAIVVKRPRKVQV 101
>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 25.2 bits (55), Expect = 2.0
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 123 AHETGLKVGDFIWT-GGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 167
A GL+ D + + ++ A +R+ S L +
Sbjct: 31 AERAGLQQLDTVLQLNERPVEHWKCVELA--HEIRSCPSEIILLVW 74
>d1vqoa2 b.40.4.5 (A:1-90) N-terminal domain of ribosomal protein L2
{Archaeon Haloarcula marismortui [TaxId: 2238]}
Length = 90
Score = 25.4 bits (56), Expect = 2.3
Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 120 HIIAHETGLKVGDFIWTG 137
I+A E G+ VGD + G
Sbjct: 67 LILAPE-GVGVGDELQVG 83
>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 99
Score = 25.6 bits (56), Expect = 2.3
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 122 IAHETG-LKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTI 166
+AH TG L++GD + + L ++ A Q+L+ L L I
Sbjct: 50 VAHRTGTLELGDKLLAIDNIRLDSCSMEDAV-QILQQCEDLVKLKI 94
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 25.8 bits (56), Expect = 2.9
Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 5/86 (5%)
Query: 56 AISEGAELLLSSSSILIFIKIFGIIWLMYTSFQMWCASINKKDSTYICETIRLPFNIASY 115
+ G +LL ++ + K LM + +I K D E + +
Sbjct: 84 MKARGYDLLFVDTAGRLHTKH----NLMEE-LKKVKRAIAKADPEEPKEVWLVLDAVTGQ 138
Query: 116 SLLIHIIAHETGLKVGDFIWTGGDCH 141
+ L + + I T D
Sbjct: 139 NGLEQAKKFHEAVGLTGVIVTKLDGT 164
>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2,
GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 24.6 bits (53), Expect = 5.1
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 122 IAHETG-LKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSL 174
+ +G L GD I + + L +A +LL + L IL P+S
Sbjct: 54 VVDRSGALHPGDHILSIDGTSMEHCSLLEAT-KLLASISEKVRLEILPVPQSQR 106
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.142 0.439
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 743,127
Number of extensions: 32126
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 35
Length of query: 198
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 117
Effective length of database: 1,295,466
Effective search space: 151569522
Effective search space used: 151569522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.2 bits)