RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2414
(114 letters)
>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 121
Score = 29.4 bits (66), Expect = 0.048
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 62 KCPYCESVYSRVDTLKLHAKRVHGLGISRYIHGL 95
C +C+ +++ + H K H I +H
Sbjct: 17 PCLFCDRLFASAEETFSHCKLEHQFNIDSMVHKH 50
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 27.3 bits (60), Expect = 0.068
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 61 HKCPYCESVYSRVDTLKLHAK 81
HKC C +SR D LK H +
Sbjct: 2 HKCEVCGKCFSRKDKLKTHMR 22
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 28.1 bits (63), Expect = 0.078
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 24 DSIFYPDPASPGMYKCVICLKSVRSRWHHLQTHF-SRNHK 62
++ F PD G+++C+ C + +L+THF S++HK
Sbjct: 3 NAEFDPDLPGGGLHRCLACARYFIDS-TNLKTHFRSKDHK 41
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 26.9 bits (60), Expect = 0.12
Identities = 6/25 (24%), Positives = 15/25 (60%)
Query: 61 HKCPYCESVYSRVDTLKLHAKRVHG 85
++C C + +++ T+K+H + H
Sbjct: 9 YECYICHARFTQSGTMKMHILQKHT 33
Score = 23.8 bits (52), Expect = 1.4
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 37 YKCVICLKSVRSRWHHLQTHFSRNH 61
Y+C IC ++ ++ H + H
Sbjct: 9 YECYICHARF-TQSGTMKMHILQKH 32
>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 25.4 bits (55), Expect = 0.31
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 61 HKCPYCESVYSRVDTLKLHAKRVH 84
CP+C++V +R L +H ++ H
Sbjct: 3 FHCPHCDTVIARKSDLGVHLRKQH 26
>d2fzcb2 g.41.7.1 (B:101-153) Aspartate carbamoyltransferase,
Regulatory-chain, C-terminal domain {Escherichia coli
[TaxId: 562]}
Length = 53
Score = 25.8 bits (57), Expect = 0.33
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 46 VRSRWHHLQTHFSRNHKCPYCESVYSR 72
V S + + KC YCE +S
Sbjct: 21 VSSSFAVRKRANDIALKCKYCEKEFSH 47
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 25.3 bits (56), Expect = 0.37
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 61 HKCPYCESVYSRVDTLKLHAKRVH 84
+ C C +SR D L H K+VH
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVH 29
Score = 22.6 bits (49), Expect = 4.4
Identities = 10/25 (40%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 37 YKCVICLKSVRSRWHHLQTHFSRNH 61
Y C C K SR HL H + H
Sbjct: 6 YICQSCGKGF-SRPDHLNGHIKQVH 29
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 31
Score = 25.2 bits (55), Expect = 0.47
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 63 CPYCESVYSRVDTLKLHAKRVHG 85
C C ++R D L HA+++H
Sbjct: 4 CGLCNRAFTRRDLLIRHAQKIHS 26
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 25.4 bits (55), Expect = 0.51
Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 6/52 (11%)
Query: 37 YKCVICLKSVRSRW----HHLQTHFSRNHKCPYCESVYSRVDTLKLHAKRVH 84
Y C C KS + H R + C C + L H ++H
Sbjct: 4 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH-MKIH 53
>d1gyza_ a.144.2.1 (A:) Ribosomal protein L20 {Aquifex aeolicus
[TaxId: 63363]}
Length = 60
Score = 25.3 bits (56), Expect = 0.69
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 80 AKRVHGLGISRYIHGL 95
A R +GL S +I+GL
Sbjct: 8 AVRAYGLNYSTFINGL 23
>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha
{Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 24.4 bits (53), Expect = 1.5
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 62 KCPYCESVYSRVDTLKL 78
KCP C S ++ ++ +L
Sbjct: 16 KCPVCSSTFTDLEANQL 32
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 24.1 bits (52), Expect = 2.1
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 11/40 (27%)
Query: 38 KCVICLKSVRSR------WHH-----LQTHFSRNHKCPYC 66
+C ICL+ + H + +N CP C
Sbjct: 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLC 46
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 290
Score = 24.9 bits (54), Expect = 2.5
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 10/30 (33%)
Query: 39 CVICLKSVRSRWHHLQTHFSRNHKCPYCES 68
C +C WH+++ KC +CE
Sbjct: 193 CSLC----ACEWHYVRI------KCSHCEE 212
>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger
peptide) {Drosophila melanogaster [TaxId: 7227]}
Length = 26
Score = 22.7 bits (48), Expect = 3.4
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 61 HKCPYCESVYSRVDTLKLHAKRVH 84
+ CP+C ++R D + H K +H
Sbjct: 2 YPCPFCFKEFTRKDNMTAHVKIIH 25
>d1k38a_ e.3.1.1 (A:) Class D beta-lactamase {Salmonella
typhimurium, OXA-2 [TaxId: 90371]}
Length = 241
Score = 24.0 bits (51), Expect = 4.9
Identities = 10/54 (18%), Positives = 18/54 (33%)
Query: 4 FKSRYPPTSPIQPFITRNNTDSIFYPDPASPGMYKCVICLKSVRSRWHHLQTHF 57
K RY P S + T D+ D + V + ++ L++
Sbjct: 40 SKKRYSPASTFKIPHTLFALDAGAVRDEFQIFRWDGVNRGFAGHNQDQDLRSAM 93
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 23.6 bits (50), Expect = 4.9
Identities = 8/54 (14%), Positives = 13/54 (24%), Gaps = 5/54 (9%)
Query: 18 ITRNNTDSIFYPDPASPGMYKCVICLKSVRSRWHH-----LQTHFSRNHKCPYC 66
I RN+ + A+ C + H + CP
Sbjct: 26 ICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 79
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 22.2 bits (48), Expect = 5.3
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 59 RNHKCPYCESVYSRVDTLKLHAKRVH 84
R+ C C ++R + LK H R H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRH-YRSH 25
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 21.9 bits (47), Expect = 7.0
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 59 RNHKCPY--CESVYSRVDTLKLHAKRVH 84
R + CP+ C +++ LK H H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSH-ILTH 27
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 21.8 bits (47), Expect = 8.3
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 61 HKCPYCESVYSRVDTLKLHAKRVH 84
+ C C +SR L H +RVH
Sbjct: 8 YGCVECGKAFSRSSILVQH-QRVH 30
>d2be3a1 d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase SP1097
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 203
Score = 23.5 bits (50), Expect = 8.5
Identities = 7/66 (10%), Positives = 23/66 (34%), Gaps = 7/66 (10%)
Query: 36 MYKCVICLKSVRSRWHHLQTHFSRNHKCPYCESVYSRVDTL-----KLHAKRVHGLGISR 90
Y + ++ + ++ + + +K E V RV + K+ + + +
Sbjct: 11 PYIQAV--GELKIKLRGIRKQYRKQNKHSPIEFVTGRVKPIESIKEKMARRGITYATLEH 68
Query: 91 YIHGLI 96
+ +
Sbjct: 69 DLQDIA 74
>d3dlqi1 a.26.1.3 (I:41-179) Interleukin-22 (IL-22) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 139
Score = 23.2 bits (50), Expect = 8.8
Identities = 7/33 (21%), Positives = 8/33 (24%)
Query: 45 SVRSRWHHLQTHFSRNHKCPYCESVYSRVDTLK 77
V L S H + V LK
Sbjct: 77 EVVPFLARLSNRLSTCHIEGDDLHIQRNVQKLK 109
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.140 0.465
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 447,923
Number of extensions: 18173
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 45
Length of query: 114
Length of database: 2,407,596
Length adjustment: 72
Effective length of query: 42
Effective length of database: 1,419,036
Effective search space: 59599512
Effective search space used: 59599512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.4 bits)