BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2416
(405 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I53|A Chain A, Crystal Structure Of Cyclin K
Length = 258
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 130/252 (51%), Gaps = 28/252 (11%)
Query: 26 CLLPEEK-LNPTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFY 84
C ++K L TPS L+GLDP E R G I G L L +ATG + F RFY
Sbjct: 14 CWYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFY 73
Query: 85 YSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLTTQYM 144
SF + P T C+ LA K+EE P++ +D+I K+ +L Q+
Sbjct: 74 MFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDII------------KTARSLLNDVQFG 121
Query: 145 TL----KTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLGCEKN--QKLMQLA-NYMN 197
K +V+ ER +L+ + F + V+HP++ ++ Y + L +KN QKL+Q+A ++N
Sbjct: 122 QFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVN 181
Query: 198 DSLRTDVFVRYDPETIASACIYLTARKLRIPL------PRNPAWYSLF--HVLESDIQDV 249
DSL T + ++++PE IA A +YL R + + P W+ F V ++D+
Sbjct: 182 DSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDI 241
Query: 250 CKRILRLYTRPK 261
C +IL LY++ K
Sbjct: 242 CHQILDLYSQGK 253
>pdb|2PK2|A Chain A, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
pdb|2PK2|B Chain B, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
pdb|2PK2|C Chain C, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
pdb|2PK2|D Chain D, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
Length = 358
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 100/202 (49%), Gaps = 7/202 (3%)
Query: 31 EKLNPTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFV 90
E+L +PS G+DP+ E R L+Q G L + Q+ + T V RFY +SF
Sbjct: 17 EQLENSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFT 76
Query: 91 RHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQV 150
R P + A + LA+K+EE P+++ VI V H ++ + P + Y+ +
Sbjct: 77 RFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAH---TCLHPQESLPDTRSEAYLQQVQDL 133
Query: 151 IKAERRVLKELGFCVHVKHPHKIIVTYLQVLGCEKNQKLMQLANYM-NDSLRTDVF-VRY 208
+ E +L+ LGF + + HPH +V Q++ K+ L Q + +M +SL F ++Y
Sbjct: 134 VILESIILQTLGFELTIDHPHTHVVKCTQLVRASKD--LAQTSYFMATNSLHLTTFSLQY 191
Query: 209 DPETIASACIYLTARKLRIPLP 230
P +A CI+L + +P
Sbjct: 192 TPPVVACVCIHLACKWSNWEIP 213
>pdb|3MI9|B Chain B, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb
pdb|3MIA|B Chain B, Crystal Structure Of Hiv-1 Tat Complexed With Atp-Bound
Human P-Tefb
Length = 266
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 100/202 (49%), Gaps = 7/202 (3%)
Query: 31 EKLNPTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFV 90
E+L +PS G+DP+ E R L+Q G L + Q+ + T V RFY +SF
Sbjct: 17 EQLENSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFT 76
Query: 91 RHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQV 150
+ P + A + LA+K+EE P+++ VI V H ++ + P + Y+ +
Sbjct: 77 QFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAH---TCLHPQESLPDTRSEAYLQQVQDL 133
Query: 151 IKAERRVLKELGFCVHVKHPHKIIVTYLQVLGCEKNQKLMQLANYM-NDSLRTDVF-VRY 208
+ E +L+ LGF + + HPH +V Q++ K+ L Q + +M +SL F ++Y
Sbjct: 134 VILESIILQTLGFELTIDHPHTHVVKCTQLVRASKD--LAQTSYFMATNSLHLTTFSLQY 191
Query: 209 DPETIASACIYLTARKLRIPLP 230
P +A CI+L + +P
Sbjct: 192 TPPVVACVCIHLACKWSNWEIP 213
>pdb|3TNH|B Chain B, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|3TNI|B Chain B, Structure Of Cdk9CYCLIN T F241L
Length = 259
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 100/202 (49%), Gaps = 7/202 (3%)
Query: 31 EKLNPTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFV 90
E+L +PS G+DP+ E R L+Q G L + Q+ + T V RFY +SF
Sbjct: 17 EQLENSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFT 76
Query: 91 RHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQV 150
+ P + A + LA+K+EE P+++ VI V H ++ + P + Y+ +
Sbjct: 77 QFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAH---TCLHPQESLPDTRSEAYLQQVQDL 133
Query: 151 IKAERRVLKELGFCVHVKHPHKIIVTYLQVLGCEKNQKLMQLANYM-NDSLRTDVF-VRY 208
+ E +L+ LGF + + HPH +V Q++ K+ L Q + +M +SL F ++Y
Sbjct: 134 VILESIILQTLGFELTIDHPHTHVVKCTQLVRASKD--LAQTSYFMATNSLHLTTFSLQY 191
Query: 209 DPETIASACIYLTARKLRIPLP 230
P +A CI+L + +P
Sbjct: 192 TPPVVACVCIHLACKWSNWEIP 213
>pdb|2W2H|A Chain A, Structural Basis Of Transcription Activation By The Cyclin
T1-Tat-Tar Rna Complex From Eiav
pdb|2W2H|B Chain B, Structural Basis Of Transcription Activation By The Cyclin
T1-Tat-Tar Rna Complex From Eiav
Length = 264
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 99/202 (49%), Gaps = 7/202 (3%)
Query: 31 EKLNPTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFV 90
E+L +PS GLDP+ E R L+Q G L + Q+ + T V RFY +SF
Sbjct: 14 EQLENSPSRRFGLDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFT 73
Query: 91 RHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQV 150
R + A + LA+K+EE P+++ VI V H ++ + P + Y+ +
Sbjct: 74 RFHRNSVAPAALFLAAKVEEQPKKLEHVIKVAH---TCLHPQESLPDTRSEAYLQQVQDL 130
Query: 151 IKAERRVLKELGFCVHVKHPHKIIVTYLQVLGCEKNQKLMQLANYM-NDSLRTDVF-VRY 208
+ E +L+ LGF + + HPH +V Q++ K+ L Q + +M +SL F ++Y
Sbjct: 131 VILESIILQTLGFELTIDHPHTHVVKCTQLVRASKD--LAQTSYFMATNSLHLTTFSLQY 188
Query: 209 DPETIASACIYLTARKLRIPLP 230
P +A CI+L + +P
Sbjct: 189 TPPVVACVCIHLACKWSNWEIP 210
>pdb|3BLH|B Chain B, Crystal Structure Of Human Cdk9CYCLINT1
pdb|3BLQ|B Chain B, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
ATP
pdb|3BLR|B Chain B, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
Flavopiridol
pdb|3MY1|B Chain B, Structure Of Cdk9CYCLINT1 IN COMPLEX WITH DRB
pdb|3LQ5|B Chain B, Structure Of Cdk9CYCLINT IN COMPLEX WITH S-Cr8
pdb|3TN8|B Chain B, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|4EC8|B Chain B, Structure Of Full Length Cdk9 In Complex With Cyclint And
Drb
pdb|4EC9|B Chain B, Crystal Structure Of Full-Length Cdk9 In Complex With
Cyclin T
pdb|4BCF|B Chain B, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCH|B Chain B, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCI|B Chain B, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCJ|B Chain B, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 260
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 99/202 (49%), Gaps = 7/202 (3%)
Query: 31 EKLNPTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFV 90
E+L +PS G+DP+ E R L+Q G L + Q+ + T V RFY +SF
Sbjct: 18 EQLENSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFT 77
Query: 91 RHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQV 150
R P + A + LA+K+E P+++ VI V H ++ + P + Y+ +
Sbjct: 78 RFPGNSVAPAALFLAAKVEGQPKKLEHVIKVAH---TCLHPQESLPDTRSEAYLQQVQDL 134
Query: 151 IKAERRVLKELGFCVHVKHPHKIIVTYLQVLGCEKNQKLMQLANYM-NDSLRTDVF-VRY 208
+ E +L+ LGF + + HPH +V Q++ K+ L Q + +M +SL F ++Y
Sbjct: 135 VILESIILQTLGFELTIDHPHTHVVKCTQLVRASKD--LAQTSYFMATNSLHLTTFSLQY 192
Query: 209 DPETIASACIYLTARKLRIPLP 230
P +A CI+L + +P
Sbjct: 193 TPPVVACVCIHLACKWSNWEIP 214
>pdb|2IVX|A Chain A, Crystal Structure Of Human Cyclin T2 At 1.8 A Resolution
(Casp Target)
pdb|2IVX|B Chain B, Crystal Structure Of Human Cyclin T2 At 1.8 A Resolution
(Casp Target)
Length = 257
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 11/211 (5%)
Query: 24 SNCLLPEEKLNPTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRF 83
S E+L TPS G++ + E R LIQ G L + Q+ + T V RF
Sbjct: 3 SRWFFTREQLENTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRF 62
Query: 84 YYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLT--T 141
Y SF + + + LA+K+EE R++ VI V H + P+L T
Sbjct: 63 YMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLH-----PLEPLLDTKCD 117
Query: 142 QYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLGCEKNQKLMQLANYM-NDSL 200
Y+ +++ E +L+ LGF + ++HPH +V Q++ K+ L Q + +M +SL
Sbjct: 118 AYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASKD--LAQTSYFMATNSL 175
Query: 201 RTDVF-VRYDPETIASACIYLTARKLRIPLP 230
F ++Y P IA CI+L + +P
Sbjct: 176 HLTTFCLQYKPTVIACVCIHLACKWSNWEIP 206
>pdb|3RGF|B Chain B, Crystal Structure Of Human Cdk8CYCC
Length = 285
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 111/242 (45%), Gaps = 19/242 (7%)
Query: 40 LDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAM 99
L L E L+I +IQ G LKL Q +AT V F+RFY S A
Sbjct: 31 LKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAP 90
Query: 100 GCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLT----TQYMTLKTQVIKAER 155
CV LASK+EE V + R + S+ + ++ +++ E
Sbjct: 91 TCVFLASKVEE--------FGVVSNTRLIAAATSVLKTRFSYAFPKEFPYRMNHILECEF 142
Query: 156 RVLKELGFCVHVKHPHKIIVTYLQVLGCEKNQKLMQLA-NYMNDSLRTDVFVRYDPETIA 214
+L+ + C+ V HP++ ++ Y+Q +G E L+ LA +ND+ RTD+ + Y P IA
Sbjct: 143 YLLELMDCCLIVYHPYRPLLQYVQDMGQE--DMLLPLAWRIVNDTYRTDLCLLYPPFMIA 200
Query: 215 SACIYLTARKLRIPLPRNPAWYSLFHVLESDIQDVCKRILRLYTRPKANTDELERQIEVI 274
AC+++ + W++ V I ++ + IL+LY + K N DE + ++
Sbjct: 201 LACLHVAC---VVQQKDARQWFAELSVDMEKILEIIRVILKLYEQWK-NFDERKEMATIL 256
Query: 275 KK 276
K
Sbjct: 257 SK 258
>pdb|1ZP2|A Chain A, Structure Of The Mediator Subunit Cyclin C
Length = 235
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 40 LDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVR-HPMETTA 98
L+ L+P + I +++QT G L+L Q +AT VL +R+ K+ + +E
Sbjct: 16 LESLEPTCLSKDTIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALV 75
Query: 99 MGCVCLASKIEEAPRRIRDVIN 120
C+ L+ K+EE P IR + N
Sbjct: 76 ATCIYLSCKVEECPVHIRTICN 97
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 261
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 71/183 (38%), Gaps = 29/183 (15%)
Query: 45 PEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCL 104
P++ +R I + + G KL + RF S S +R ++ + L
Sbjct: 33 PDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLL 92
Query: 105 ASKIEEA-PRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGF 163
ASK EE P + + + + T K QV++ E VLK L F
Sbjct: 93 ASKFEEIYPPEVAEFVYI-------------------TDDTYSKKQVLRMEHLVLKVLAF 133
Query: 164 CVHVKHPHKIIVTY---LQVLGCEKNQKLMQLANYMND--SLRTDVFVRYDPETIASACI 218
+ ++ + Y LQ C K+ LA ++ + + D +++Y P IA A
Sbjct: 134 DLAAPTVNQFLTQYFLHLQPANC----KVESLAMFLGELSLIDADPYLKYLPSLIAGAAF 189
Query: 219 YLT 221
+L
Sbjct: 190 HLA 192
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 264
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 71/183 (38%), Gaps = 29/183 (15%)
Query: 45 PEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCL 104
P++ +R I + + G KL + RF S S +R ++ + L
Sbjct: 34 PDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLL 93
Query: 105 ASKIEEA-PRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGF 163
ASK EE P + + + + T K QV++ E VLK L F
Sbjct: 94 ASKFEEIYPPEVAEFVYI-------------------TDDTYTKKQVLRMEHLVLKVLAF 134
Query: 164 CVHVKHPHKIIVTYL---QVLGCEKNQKLMQLANYMND--SLRTDVFVRYDPETIASACI 218
+ ++ + Y Q C K+ LA ++ + + D +++Y P IA+A
Sbjct: 135 DLAAPTINQFLTQYFLHQQPANC----KVESLAMFLGELSLIDADPYLKYLPSVIAAAAF 190
Query: 219 YLT 221
+L
Sbjct: 191 HLA 193
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
Length = 262
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 23/180 (12%)
Query: 45 PEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCL 104
P++ +R I + + G KL + RF S S +R ++ + L
Sbjct: 34 PDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLL 93
Query: 105 ASKIEEA-PRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGF 163
ASK EE P + + + + T K QV++ E VLK L F
Sbjct: 94 ASKFEEIYPPEVAEFVYI-------------------TDDTYTKKQVLRMEHLVLKVLAF 134
Query: 164 CVHVKHPHKIIVTYLQVLGCEKNQKLMQLANYMND--SLRTDVFVRYDPETIASACIYLT 221
+ ++ + Y + N K+ LA ++ + + D +++Y P IA+A +L
Sbjct: 135 DLAAPTINQFLTQYF-LHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAAAAFHLA 193
>pdb|1VIN|A Chain A, Bovine Cyclin A3
Length = 268
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 23/180 (12%)
Query: 45 PEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCL 104
P++ +R I + + G KL + RF S S +R ++ + L
Sbjct: 34 PDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLL 93
Query: 105 ASKIEEA-PRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGF 163
ASK EE P + + + + T K QV++ E VLK L F
Sbjct: 94 ASKFEEIYPPEVAEFVYI-------------------TDDTYTKKQVLRMEHLVLKVLAF 134
Query: 164 CVHVKHPHKIIVTYLQVLGCEKNQKLMQLANYMND--SLRTDVFVRYDPETIASACIYLT 221
+ ++ + Y + N K+ LA ++ + + D +++Y P IA+A +L
Sbjct: 135 DLAAPTINQFLTQYF-LHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAAAAFHLA 193
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
Length = 269
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 71/183 (38%), Gaps = 29/183 (15%)
Query: 45 PEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCL 104
P++ +R I + + G KL + RF S S +R ++ + L
Sbjct: 34 PDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLL 93
Query: 105 ASKIEEA-PRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGF 163
ASK EE P + + + + T K QV++ E VLK L F
Sbjct: 94 ASKFEEIYPPEVAEFVYI-------------------TDDTYTKKQVLRMEHLVLKVLAF 134
Query: 164 CVHVKHPHKIIVTYL---QVLGCEKNQKLMQLANYMND--SLRTDVFVRYDPETIASACI 218
+ ++ + Y Q C K+ LA ++ + + D +++Y P IA+A
Sbjct: 135 DLAAPTINQFLTQYFLHQQPANC----KVESLAMFLGELSLIDADPYLKYLPSVIAAAAF 190
Query: 219 YLT 221
+L
Sbjct: 191 HLA 193
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
Length = 268
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 71/183 (38%), Gaps = 29/183 (15%)
Query: 45 PEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCL 104
P++ +R I + + G KL + RF S S +R ++ + L
Sbjct: 34 PDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLL 93
Query: 105 ASKIEEA-PRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGF 163
ASK EE P + + + + T K QV++ E VLK L F
Sbjct: 94 ASKFEEIYPPEVAEFVYI-------------------TDDTYTKKQVLRMEHLVLKVLAF 134
Query: 164 CVHVKHPHKIIVTYL---QVLGCEKNQKLMQLANYMND--SLRTDVFVRYDPETIASACI 218
+ ++ + Y Q C K+ LA ++ + + D +++Y P IA+A
Sbjct: 135 DLAAPTINQFLTQYFLHQQPANC----KVESLAMFLGELSLIDADPYLKYLPSVIAAAAF 190
Query: 219 YLT 221
+L
Sbjct: 191 HLA 193
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|B Chain B, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|D Chain D, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|B Chain B, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|D Chain D, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
Length = 262
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 71/183 (38%), Gaps = 29/183 (15%)
Query: 45 PEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCL 104
P++ +R I + + G KL + RF S S +R ++ + L
Sbjct: 34 PDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLL 93
Query: 105 ASKIEEA-PRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGF 163
ASK EE P + + + + T K QV++ E VLK L F
Sbjct: 94 ASKFEEIYPPEVAEFVYI-------------------TDDTYTKKQVLRMEHLVLKVLAF 134
Query: 164 CVHVKHPHKIIVTYL---QVLGCEKNQKLMQLANYMND--SLRTDVFVRYDPETIASACI 218
+ ++ + Y Q C K+ LA ++ + + D +++Y P IA+A
Sbjct: 135 DLAAPTINQFLTQYFLHQQPANC----KVESLAMFLGELSLIDADPYLKYLPSVIAAAAF 190
Query: 219 YLT 221
+L
Sbjct: 191 HLA 193
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|D Chain D, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 257
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 70/180 (38%), Gaps = 23/180 (12%)
Query: 45 PEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCL 104
P++ +R I + + G KL + RF S S +R ++ + L
Sbjct: 30 PDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLL 89
Query: 105 ASKIEEA-PRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGF 163
ASK EE P + + + + T K QV++ E VLK L F
Sbjct: 90 ASKFEEIYPPEVAEFVYI-------------------TDDTYSKKQVLRMEHLVLKVLAF 130
Query: 164 CVHVKHPHKIIVTYLQVLGCEKNQKLMQLANYMND--SLRTDVFVRYDPETIASACIYLT 221
+ ++ + Y L N K+ LA ++ + + D +++Y P IA A +L
Sbjct: 131 DLAAPTVNQFLTQYFLHLQ-PANCKVESLAMFLGELSLIDADPYLKYLPSLIAGAAFHLA 189
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|D Chain D, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 258
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 70/180 (38%), Gaps = 23/180 (12%)
Query: 45 PEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCL 104
P++ +R I + + G KL + RF S S +R ++ + L
Sbjct: 30 PDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLL 89
Query: 105 ASKIEEA-PRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGF 163
ASK EE P + + + + T K QV++ E VLK L F
Sbjct: 90 ASKFEEIYPPEVAEFVYI-------------------TDDTYSKKQVLRMEHLVLKVLAF 130
Query: 164 CVHVKHPHKIIVTYLQVLGCEKNQKLMQLANYMND--SLRTDVFVRYDPETIASACIYLT 221
+ ++ + Y L N K+ LA ++ + + D +++Y P IA A +L
Sbjct: 131 DLAAPTVNQFLTQYFLHLQ-PANCKVESLAMFLGELSLIDADPYLKYLPSLIAGAAFHLA 189
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 71/183 (38%), Gaps = 29/183 (15%)
Query: 45 PEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCL 104
P++ +R I + + G KL + RF S S +R ++ + L
Sbjct: 34 PDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLL 93
Query: 105 ASKIEEA-PRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGF 163
ASK EE P + + + + T K QV++ E VLK L F
Sbjct: 94 ASKFEEIYPPEVAEFVYI-------------------TDDTYTKKQVLRMEHLVLKVLTF 134
Query: 164 CVHVKHPHKIIVTYL---QVLGCEKNQKLMQLANYMND--SLRTDVFVRYDPETIASACI 218
+ ++ + Y Q C K+ LA ++ + + D +++Y P IA+A
Sbjct: 135 DLAAPTVNQFLTQYFLHQQPANC----KVESLAMFLGELSLIDADPYLKYLPSVIAAAAF 190
Query: 219 YLT 221
+L
Sbjct: 191 HLA 193
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 71/183 (38%), Gaps = 29/183 (15%)
Query: 45 PEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCL 104
P++ +R I + + G KL + RF S S +R ++ + L
Sbjct: 34 PDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLL 93
Query: 105 ASKIEEA-PRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGF 163
ASK EE P + + + + T K QV++ E VLK L F
Sbjct: 94 ASKFEEIYPPEVAEFVYI-------------------TDDTYTKKQVLRMEHLVLKVLTF 134
Query: 164 CVHVKHPHKIIVTYL---QVLGCEKNQKLMQLANYMND--SLRTDVFVRYDPETIASACI 218
+ ++ + Y Q C K+ LA ++ + + D +++Y P IA+A
Sbjct: 135 DLAAPTVNQFLTQYFLHQQPANC----KVESLAMFLGELSLIDADPYLKYLPSVIAAAAF 190
Query: 219 YLT 221
+L
Sbjct: 191 HLA 193
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|D Chain D, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|B Chain B, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|D Chain D, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|B Chain B, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|D Chain D, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|B Chain B, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|D Chain D, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|B Chain B, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|D Chain D, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|B Chain B, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|D Chain D, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|B Chain B, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|D Chain D, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|B Chain B, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|D Chain D, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 265
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 70/180 (38%), Gaps = 23/180 (12%)
Query: 45 PEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCL 104
P++ +R I + + G KL + RF S S +R ++ + L
Sbjct: 37 PDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLL 96
Query: 105 ASKIEEA-PRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGF 163
ASK EE P + + + + T K QV++ E VLK L F
Sbjct: 97 ASKFEEIYPPEVAEFVYI-------------------TDDTYTKKQVLRMEHLVLKVLTF 137
Query: 164 CVHVKHPHKIIVTYLQVLGCEKNQKLMQLANYMND--SLRTDVFVRYDPETIASACIYLT 221
+ ++ + Y + N K+ LA ++ + + D +++Y P IA A +L
Sbjct: 138 DLAAPTVNQFLTQYF-LHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLA 196
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 71/183 (38%), Gaps = 29/183 (15%)
Query: 45 PEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCL 104
P++ +R I + + G KL + RF S S +R ++ + L
Sbjct: 34 PDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLL 93
Query: 105 ASKIEEA-PRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGF 163
ASK EE P + + + + T K QV++ E VLK L F
Sbjct: 94 ASKFEEIYPPEVAEFVYI-------------------TDDTYTKKQVLRMEHLVLKVLTF 134
Query: 164 CVHVKHPHKIIVTYL---QVLGCEKNQKLMQLANYMND--SLRTDVFVRYDPETIASACI 218
+ ++ + Y Q C K+ LA ++ + + D +++Y P IA+A
Sbjct: 135 DLAAPTVNQFLTQYFLHQQPANC----KVESLAMFLGELSLIDADPYLKYLPSVIAAAAF 190
Query: 219 YLT 221
+L
Sbjct: 191 HLA 193
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|D Chain D, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1JSU|B Chain B, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FVV|B Chain B, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|D Chain D, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1OKV|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|B Chain B, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|D Chain D, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|B Chain B, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|D Chain D, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1URC|B Chain B, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|D Chain D, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|2C5O|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2CCH|B Chain B, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|D Chain D, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2I40|B Chain B, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|D Chain D, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|3EID|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|B Chain B, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|D Chain D, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2WEV|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 260
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 70/183 (38%), Gaps = 29/183 (15%)
Query: 45 PEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCL 104
P++ +R I + + G KL + RF S S +R ++ + L
Sbjct: 32 PDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLL 91
Query: 105 ASKIEEA-PRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGF 163
ASK EE P + + + + T K QV++ E VLK L F
Sbjct: 92 ASKFEEIYPPEVAEFVYI-------------------TDDTYTKKQVLRMEHLVLKVLTF 132
Query: 164 CVHVKHPHKIIVTYL---QVLGCEKNQKLMQLANYMND--SLRTDVFVRYDPETIASACI 218
+ ++ + Y Q C K+ LA ++ + + D +++Y P IA A
Sbjct: 133 DLAAPTVNQFLTQYFLHQQPANC----KVESLAMFLGELSLIDADPYLKYLPSVIAGAAF 188
Query: 219 YLT 221
+L
Sbjct: 189 HLA 191
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|D Chain D, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
Length = 261
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 70/180 (38%), Gaps = 23/180 (12%)
Query: 45 PEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCL 104
P++ +R I + + G KL + RF S S +R ++ + L
Sbjct: 30 PDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLL 89
Query: 105 ASKIEEA-PRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGF 163
ASK EE P + + + + T K QV++ E VLK L F
Sbjct: 90 ASKFEEIYPPEVAEFVYI-------------------TDDTYTKKQVLRMEHLVLKVLTF 130
Query: 164 CVHVKHPHKIIVTYLQVLGCEKNQKLMQLANYMND--SLRTDVFVRYDPETIASACIYLT 221
+ ++ + Y + N K+ LA ++ + + D +++Y P IA A +L
Sbjct: 131 DLAAPTVNQFLTQYF-LHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLA 189
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 261
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 70/183 (38%), Gaps = 29/183 (15%)
Query: 45 PEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCL 104
P++ +R I + + G KL + RF S S +R ++ + L
Sbjct: 33 PDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLL 92
Query: 105 ASKIEEA-PRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGF 163
ASK EE P + + + + T K QV++ E VLK L F
Sbjct: 93 ASKFEEIYPPEVAEFVYI-------------------TDDTYTKKQVLRMEHLVLKVLTF 133
Query: 164 CVHVKHPHKIIVTYL---QVLGCEKNQKLMQLANYMND--SLRTDVFVRYDPETIASACI 218
+ ++ + Y Q C K+ LA ++ + + D +++Y P IA A
Sbjct: 134 DLAAPTVNQFLTQYFLHQQPANC----KVESLAMFLGELSLIDADPYLKYLPSVIAGAAF 189
Query: 219 YLT 221
+L
Sbjct: 190 HLA 192
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|D Chain D, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1GY3|B Chain B, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|D Chain D, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1H1P|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1P5E|B Chain B, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|D Chain D, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1PKD|B Chain B, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|D Chain D, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|2C6T|B Chain B, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|D Chain D, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|B Chain B, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|D Chain D, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CCI|B Chain B, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|D Chain D, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2UZB|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4EOI|B Chain B, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|D Chain D, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOJ|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOK|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOM|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EON|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOO|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOP|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOQ|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOR|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOS|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 258
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 70/180 (38%), Gaps = 23/180 (12%)
Query: 45 PEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCL 104
P++ +R I + + G KL + RF S S +R ++ + L
Sbjct: 30 PDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLL 89
Query: 105 ASKIEEA-PRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGF 163
ASK EE P + + + + T K QV++ E VLK L F
Sbjct: 90 ASKFEEIYPPEVAEFVYI-------------------TDDTYTKKQVLRMEHLVLKVLTF 130
Query: 164 CVHVKHPHKIIVTYLQVLGCEKNQKLMQLANYMND--SLRTDVFVRYDPETIASACIYLT 221
+ ++ + Y + N K+ LA ++ + + D +++Y P IA A +L
Sbjct: 131 DLAAPTVNQFLTQYF-LHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLA 189
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|D Chain D, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1H24|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|B Chain B, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|D Chain D, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2C5N|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2UUE|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2WMA|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 259
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 70/183 (38%), Gaps = 29/183 (15%)
Query: 45 PEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCL 104
P++ +R I + + G KL + RF S S +R ++ + L
Sbjct: 31 PDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLL 90
Query: 105 ASKIEEA-PRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGF 163
ASK EE P + + + + T K QV++ E VLK L F
Sbjct: 91 ASKFEEIYPPEVAEFVYI-------------------TDDTYTKKQVLRMEHLVLKVLTF 131
Query: 164 CVHVKHPHKIIVTYL---QVLGCEKNQKLMQLANYMND--SLRTDVFVRYDPETIASACI 218
+ ++ + Y Q C K+ LA ++ + + D +++Y P IA A
Sbjct: 132 DLAAPTVNQFLTQYFLHQQPANC----KVESLAMFLGELSLIDADPYLKYLPSVIAGAAF 187
Query: 219 YLT 221
+L
Sbjct: 188 HLA 190
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|D Chain D, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|2IW6|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW8|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW9|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 260
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 70/180 (38%), Gaps = 23/180 (12%)
Query: 45 PEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCL 104
P++ +R I + + G KL + RF S S +R ++ + L
Sbjct: 32 PDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLL 91
Query: 105 ASKIEEA-PRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGF 163
ASK EE P + + + + T K QV++ E VLK L F
Sbjct: 92 ASKFEEIYPPEVAEFVYI-------------------TDDTYTKKQVLRMEHLVLKVLTF 132
Query: 164 CVHVKHPHKIIVTYLQVLGCEKNQKLMQLANYMND--SLRTDVFVRYDPETIASACIYLT 221
+ ++ + Y + N K+ LA ++ + + D +++Y P IA A +L
Sbjct: 133 DLAAPTVNQFLTQYF-LHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLA 191
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|D Chain D, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
Length = 256
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 70/180 (38%), Gaps = 23/180 (12%)
Query: 45 PEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCL 104
P++ +R I + + G KL + RF S S +R ++ + L
Sbjct: 28 PDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLL 87
Query: 105 ASKIEEA-PRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGF 163
ASK EE P + + + + T K QV++ E VLK L F
Sbjct: 88 ASKFEEIYPPEVAEFVYI-------------------TDDTYTKKQVLRMEHLVLKVLTF 128
Query: 164 CVHVKHPHKIIVTYLQVLGCEKNQKLMQLANYMND--SLRTDVFVRYDPETIASACIYLT 221
+ ++ + Y + N K+ LA ++ + + D +++Y P IA A +L
Sbjct: 129 DLAAPTVNQFLTQYF-LHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLA 187
>pdb|1JKW|A Chain A, Structure Of Cyclin Mcs2
Length = 323
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 20/168 (11%)
Query: 68 LPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQ 127
+P+ + T + F+RFY + S + + + C LA K++E NV Q
Sbjct: 75 MPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDE--------FNV--SSPQ 124
Query: 128 VMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLGC---- 183
+ +P+ Q L+ Q+++ E ++++L F + V +P++ +L L
Sbjct: 125 FVGNLRESPL---GQEKALE-QILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPI 180
Query: 184 -EKNQKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPL 229
E + L + A +++N TD ++ Y P IA I +A + I +
Sbjct: 181 LENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITM 228
>pdb|1KXU|A Chain A, Cyclin H, A Positive Regulatory Subunit Of Cdk Activating
Kinase
Length = 333
Score = 34.7 bits (78), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 20/168 (11%)
Query: 68 LPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQ 127
+P+ + T + F+RFY + S + + + C LA K++E NV Q
Sbjct: 85 MPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDE--------FNV--SSPQ 134
Query: 128 VMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLGC---- 183
+ +P+ Q L+ Q+++ E ++++L F + V +P++ +L L
Sbjct: 135 FVGNLRESPL---GQEKALE-QILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPI 190
Query: 184 -EKNQKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPL 229
E + L + A +++N TD ++ Y P IA I +A + I +
Sbjct: 191 LENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITM 238
>pdb|1T7P|A Chain A, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|A Chain A, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|A Chain A, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|A Chain A, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|A Chain A, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|C Chain C, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|A Chain A, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|A Chain A, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|A Chain A, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|A Chain A, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|A Chain A, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|A Chain A, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|A Chain A, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide
Length = 698
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 131 QKSITPMLLTTQYMTLKTQVIKAERRVLKEL-GFCVHVKHPHKIIVTYLQVLGC 183
++SI L+ + Q +K +RR +K L G VHV+ PH + T LQ G
Sbjct: 560 RESIQQTLVESSQWVAGEQQVKWKRRWIKGLDGRKVHVRSPHAALNTLLQSAGA 613
>pdb|2AJQ|A Chain A, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|F Chain F, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
Length = 704
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 131 QKSITPMLLTTQYMTLKTQVIKAERRVLKEL-GFCVHVKHPHKIIVTYLQVLGC 183
++SI L+ + Q +K +RR +K L G VHV+ PH + T LQ G
Sbjct: 566 RESIQQTLVESSQWVAGEQQVKWKRRWIKGLDGRKVHVRSPHAALNTLLQSAGA 619
>pdb|1ZYQ|A Chain A, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
Length = 698
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 131 QKSITPMLLTTQYMTLKTQVIKAERRVLKEL-GFCVHVKHPHKIIVTYLQVLGC 183
++SI L+ + Q +K +RR +K L G VHV+ PH + T LQ G
Sbjct: 560 RESIQQTLVESSQWVAGEQQVKWKRRWIKGLDGRKVHVRSPHAALNTLLQSAGA 613
>pdb|3DZ1|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Rhodopseudomonas Palustris At 1.87a Resolution
Length = 313
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 19/82 (23%)
Query: 8 SLKAPPKPYGKIALSLSNCLLPEEKLNPTPSMLDGLDPEVETDLRI------IGCELIQT 61
SLK P+ G A++ PTP DG +V D R+ +GCE +
Sbjct: 2 SLKLTPEAAGTFAIA------------PTPFHDDGKIDDVSID-RLTDFYAEVGCEGVTV 48
Query: 62 AGILLKLPQVAMATGQVLFQRF 83
GIL + P++ A + + RF
Sbjct: 49 LGILGEAPKLDAAEAEAVATRF 70
>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
Length = 239
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 10/108 (9%)
Query: 36 TPSMLDGLDPEVETDLRIIGCELIQTAG---ILLKLP------QVAMATGQVLFQRFYYS 86
TP + D P ET II C L+ + G +LL +P + AT ++L +
Sbjct: 85 TPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKXFGERA 144
Query: 87 KSF-VRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKS 133
+SF + +G L + EAP I+D+ ++F +N K+
Sbjct: 145 RSFXILIFTRKDDLGDTNLHDYLREAPEDIQDLXDIFGDRYCALNNKA 192
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,873,591
Number of Sequences: 62578
Number of extensions: 329827
Number of successful extensions: 767
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 729
Number of HSP's gapped (non-prelim): 44
length of query: 405
length of database: 14,973,337
effective HSP length: 101
effective length of query: 304
effective length of database: 8,652,959
effective search space: 2630499536
effective search space used: 2630499536
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)