Query psy2416
Match_columns 405
No_of_seqs 297 out of 1989
Neff 8.4
Searched_HMMs 46136
Date Sat Aug 17 00:24:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2416.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2416hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0835|consensus 100.0 8E-54 1.7E-58 391.5 31.2 259 32-290 3-262 (367)
2 KOG0834|consensus 100.0 6.8E-47 1.5E-51 356.9 21.8 233 24-262 10-250 (323)
3 TIGR00569 ccl1 cyclin ccl1. Un 100.0 1.3E-38 2.8E-43 301.8 22.7 222 20-260 4-258 (305)
4 KOG0794|consensus 100.0 3.6E-37 7.8E-42 269.4 14.0 231 22-262 10-243 (264)
5 COG5333 CCL1 Cdk activating ki 100.0 1E-30 2.3E-35 240.7 14.4 175 43-230 36-211 (297)
6 KOG0656|consensus 99.9 1.3E-24 2.7E-29 205.5 16.7 193 41-251 67-268 (335)
7 PRK00423 tfb transcription ini 99.9 7.1E-23 1.5E-27 197.0 22.9 219 10-257 59-304 (310)
8 KOG2496|consensus 99.9 9.7E-24 2.1E-28 192.6 13.4 190 21-227 6-224 (325)
9 KOG0655|consensus 99.9 5.9E-24 1.3E-28 195.4 10.8 187 46-259 139-337 (408)
10 KOG0653|consensus 99.9 2.2E-22 4.8E-27 199.3 14.5 209 48-286 154-370 (391)
11 COG5024 Cyclin [Cell division 99.9 5.7E-21 1.2E-25 187.1 14.0 189 48-262 209-404 (440)
12 KOG0654|consensus 99.8 1.8E-21 3.9E-26 185.8 8.6 257 5-289 88-348 (359)
13 KOG1597|consensus 99.8 1.1E-18 2.4E-23 159.2 19.0 226 3-256 44-287 (308)
14 PF00134 Cyclin_N: Cyclin, N-t 99.7 2.3E-17 4.9E-22 138.3 9.9 102 46-166 25-127 (127)
15 COG1405 SUA7 Transcription ini 99.7 7.7E-16 1.7E-20 144.7 19.8 182 53-258 98-280 (285)
16 cd00043 CYCLIN Cyclin box fold 99.4 3.4E-13 7.4E-18 104.5 8.3 87 52-158 2-88 (88)
17 smart00385 CYCLIN domain prese 99.3 3.3E-12 7.2E-17 97.8 7.1 83 57-159 1-83 (83)
18 PF02984 Cyclin_C: Cyclin, C-t 99.2 1.2E-11 2.6E-16 101.9 3.1 112 168-287 1-113 (118)
19 KOG0835|consensus 99.0 9.4E-09 2E-13 95.7 15.9 56 57-112 143-200 (367)
20 KOG1598|consensus 98.8 1.7E-08 3.7E-13 100.2 9.7 154 54-229 69-227 (521)
21 PF00382 TFIIB: Transcription 98.7 1.2E-07 2.6E-12 70.9 8.0 64 59-122 1-64 (71)
22 smart00385 CYCLIN domain prese 98.6 1.7E-07 3.6E-12 71.4 7.6 80 172-254 1-82 (83)
23 cd00043 CYCLIN Cyclin box fold 98.5 3.6E-07 7.8E-12 70.3 8.2 84 167-253 2-87 (88)
24 KOG4164|consensus 98.4 4.2E-07 9.1E-12 86.6 5.8 102 58-177 388-490 (497)
25 KOG4368|consensus 98.2 5.9E-06 1.3E-10 82.3 9.7 15 245-259 552-566 (757)
26 PF08613 Cyclin: Cyclin; Inte 98.1 2.5E-05 5.5E-10 67.2 10.1 90 55-165 54-149 (149)
27 PRK00423 tfb transcription ini 97.9 4.3E-05 9.4E-10 73.9 9.4 67 56-122 220-286 (310)
28 PF00382 TFIIB: Transcription 97.8 6.2E-05 1.3E-09 56.1 6.3 69 174-245 1-70 (71)
29 KOG4368|consensus 97.4 0.00037 7.9E-09 69.9 7.4 8 150-157 281-288 (757)
30 COG1405 SUA7 Transcription ini 96.5 0.0086 1.9E-07 56.9 7.8 68 55-122 194-261 (285)
31 KOG2548|consensus 96.1 0.003 6.5E-08 62.8 2.1 13 56-68 38-50 (653)
32 PF00134 Cyclin_N: Cyclin, N-t 96.0 0.04 8.7E-07 45.4 8.3 86 171-258 35-123 (127)
33 KOG1597|consensus 95.7 0.042 9.1E-07 51.4 7.7 68 55-122 203-270 (308)
34 KOG2548|consensus 95.5 0.0066 1.4E-07 60.5 1.8 13 74-86 131-143 (653)
35 PF01857 RB_B: Retinoblastoma- 95.5 0.079 1.7E-06 44.6 8.0 68 55-122 14-83 (135)
36 KOG0151|consensus 95.3 0.039 8.5E-07 57.1 6.6 24 62-85 450-473 (877)
37 PF02984 Cyclin_C: Cyclin, C-t 94.2 0.18 4E-06 40.7 6.9 56 56-111 4-59 (118)
38 KOG0151|consensus 93.7 0.14 2.9E-06 53.3 6.1 13 168-180 556-568 (877)
39 TIGR00569 ccl1 cyclin ccl1. Un 93.4 0.3 6.5E-06 47.0 7.7 84 173-259 62-152 (305)
40 KOG1674|consensus 93.4 0.39 8.5E-06 43.9 8.1 92 57-168 80-181 (218)
41 KOG0834|consensus 93.0 0.06 1.3E-06 51.9 2.2 54 59-112 155-212 (323)
42 KOG1598|consensus 92.8 0.14 3.1E-06 51.8 4.6 56 70-125 184-239 (521)
43 KOG1847|consensus 92.6 0.17 3.7E-06 52.0 4.9 13 55-67 375-387 (878)
44 KOG4557|consensus 92.5 6.8 0.00015 35.3 14.1 174 58-261 2-185 (262)
45 KOG1847|consensus 92.4 0.18 3.8E-06 51.9 4.6 9 57-65 373-381 (878)
46 KOG2146|consensus 90.8 5.9 0.00013 37.1 12.3 13 246-258 96-108 (354)
47 KOG0132|consensus 90.3 0.61 1.3E-05 49.2 6.2 17 147-163 124-140 (894)
48 PF08613 Cyclin: Cyclin; Inte 90.0 2 4.3E-05 36.8 8.3 88 169-258 53-146 (149)
49 KOG1675|consensus 89.6 0.89 1.9E-05 43.0 6.1 83 75-178 213-298 (343)
50 KOG0656|consensus 88.9 4.1 9E-05 39.5 10.3 82 147-230 49-143 (335)
51 KOG0794|consensus 88.5 0.86 1.9E-05 41.4 5.0 73 187-259 59-146 (264)
52 KOG2146|consensus 86.6 13 0.00028 35.0 11.5 14 150-163 14-27 (354)
53 KOG0796|consensus 86.0 0.59 1.3E-05 44.5 2.7 11 246-256 188-198 (319)
54 COG5333 CCL1 Cdk activating ki 78.4 3.7 8.1E-05 39.0 4.9 86 172-259 50-143 (297)
55 PF07420 DUF1509: Protein of u 77.1 2.7 5.9E-05 39.4 3.5 25 48-72 41-65 (377)
56 KOG2888|consensus 77.0 1.5 3.3E-05 41.7 2.0 7 157-163 156-162 (453)
57 KOG2496|consensus 76.2 5.9 0.00013 37.6 5.5 55 173-227 62-117 (325)
58 PF09080 K-cyclin_vir_C: K cyc 61.1 73 0.0016 24.4 7.6 87 170-257 4-99 (106)
59 KOG1010|consensus 60.9 20 0.00043 38.9 6.2 68 55-122 680-749 (920)
60 KOG4246|consensus 53.1 6.4 0.00014 42.2 1.1 8 76-83 76-83 (1194)
61 COG5024 Cyclin [Cell division 51.7 23 0.00049 35.9 4.7 74 187-260 231-307 (440)
62 PF09241 Herp-Cyclin: Herpesvi 51.2 1.1E+02 0.0023 23.2 8.7 87 170-259 4-100 (106)
63 PF11357 Spy1: Cell cycle regu 48.4 1.2E+02 0.0026 25.3 7.6 83 66-168 25-110 (131)
64 KOG3869|consensus 46.7 13 0.00028 36.8 2.0 13 154-166 52-64 (450)
65 KOG0653|consensus 44.4 57 0.0012 32.7 6.3 80 178-259 169-252 (391)
66 KOG3263|consensus 43.5 5.5 0.00012 34.4 -0.9 6 360-365 65-70 (196)
67 KOG0655|consensus 42.9 72 0.0016 30.9 6.2 21 211-231 189-209 (408)
68 KOG4557|consensus 38.5 3.1E+02 0.0067 25.0 10.3 57 174-230 3-62 (262)
69 PF13591 MerR_2: MerR HTH fami 35.8 59 0.0013 24.7 3.8 28 57-84 46-73 (84)
70 COG4047 Uncharacterized protei 34.6 2.2E+02 0.0047 25.8 7.5 45 232-276 59-105 (243)
71 PRK13280 N-glycosylase/DNA lya 33.9 72 0.0016 30.1 4.7 46 232-277 66-113 (269)
72 COG5552 Uncharacterized conser 28.9 1.8E+02 0.004 21.5 5.1 52 209-261 16-67 (88)
73 PF01857 RB_B: Retinoblastoma- 27.5 2E+02 0.0044 24.1 6.0 55 172-228 16-73 (135)
74 KOG0654|consensus 24.4 1.1E+02 0.0024 30.1 4.4 37 74-110 257-293 (359)
75 PF03261 CDK5_activator: Cycli 23.9 1.2E+02 0.0026 29.6 4.4 18 92-109 270-287 (346)
76 cd00171 Sec7 Sec7 domain; Doma 22.6 5.3E+02 0.012 22.7 8.4 67 163-229 74-146 (185)
77 PF12244 DUF3606: Protein of u 21.6 75 0.0016 22.3 2.0 20 234-253 25-44 (57)
78 PF09171 DUF1886: Domain of un 20.9 1.3E+02 0.0027 28.1 3.9 45 232-276 56-102 (246)
79 PHA02779 E6 protein; Provision 20.8 12 0.00025 32.2 -2.7 54 58-111 12-77 (150)
No 1
>KOG0835|consensus
Probab=100.00 E-value=8e-54 Score=391.48 Aligned_cols=259 Identities=56% Similarity=0.941 Sum_probs=243.4
Q ss_pred hhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccchhhHHHHHHHHHHhhcCC
Q psy2416 32 KLNPTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEA 111 (405)
Q Consensus 32 ~l~~tps~~~gi~~~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~LA~K~ee~ 111 (405)
.|..+|+..+|++.+.|..+|..+|+||++.|..|+||+.+++|+.++|+|||..+++..+++..|++|||+||+|+||.
T Consensus 3 ~i~~~~s~qd~l~~e~e~el~~LG~e~Iqea~ILL~L~q~a~atgqVLFqRf~~~ks~v~~~~e~vv~ACv~LASKiEE~ 82 (367)
T KOG0835|consen 3 KIDSTPSLQDGLSLETEEELRILGCELIQEAGILLNLPQVAMATGQVLFQRFCYSKSFVRHDFEIVVMACVLLASKIEEE 82 (367)
T ss_pred cccCchhhhcccccchHHHHHHHhHHHHHhhhHhhcCcHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHhhhccc
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHHhhccCCCCcccchhHhhHHHHHHHHHHHHHHHHcCcceeeCChHHHHHHHHHHhCCCccHHHHH
Q psy2416 112 PRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLGCEKNQKLMQ 191 (405)
Q Consensus 112 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~E~~iL~~L~F~l~~~~P~~~l~~~l~~l~~~~~~~l~~ 191 (405)
|.+++||++|++.+.+........+.+.+..|..++..++.+|..||.+|||+++|.|||.++..|++.|++..+..|.|
T Consensus 83 Prr~rdVinVFh~L~~r~~~~~~~~~~~~~~~~~lk~~~ir~e~~ILr~LGF~~Hv~hPhklii~YLqtL~~~~~~~l~Q 162 (367)
T KOG0835|consen 83 PRRIRDVINVFHYLEQRRESEAAEHLILARLYINLKMQVIRAERRILRELGFDVHVEHPHKLIIMYLQTLQLPPNLKLLQ 162 (367)
T ss_pred cccHhHHHHHHHHHHHHHhccCcchhhhhhHHhhhhhHHHHHHHHHHHHhCCeeeeeccHHHHHHHHHHhcCCCchhHHH
Confidence 99999999999999876555555555667788889999999999999999999999999999999999999998888999
Q ss_pred HH-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCCCCCCCcchhhhhhcchhhHHHHHHHHHHHhcCCCCChhHHHHH
Q psy2416 192 LA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLFHVLESDIQDVCKRILRLYTRPKANTDELERQ 270 (405)
Q Consensus 192 ~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~~~~~~~~~l~~~~~~il~ly~~~~~~~~~l~~~ 270 (405)
.+ +|+||++.|++|+.|+|..|||||||||+..+++++|..+.||..|+++.++|+++|..++.+|...+++..-++..
T Consensus 163 ~~wNfmNDslRT~v~vry~pe~iACaciyLaAR~~eIpLp~~P~Wf~~Fd~~k~eid~ic~~l~~lY~~~~p~~~li~~~ 242 (367)
T KOG0835|consen 163 AAWNFMNDSLRTDVFVRYSPESIACACIYLAARNLEIPLPFQPHWFKAFDTTKREIDEICYRLIPLYKRAKPDETLIEAF 242 (367)
T ss_pred HHHHhhhhccccceeeecCHHHHHHHHHHHHHhhhcCCCCCCccHHHHcCCcHHHHHHHHHHHHHHHHhcccCHHHHHHH
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHhhhhccCC
Q psy2416 271 IEVIKKEYQLSKDRKVLVSG 290 (405)
Q Consensus 271 l~~~r~~~~~~k~k~~~~~~ 290 (405)
++..+.+|+.+..+.++...
T Consensus 243 vd~~k~~~~da~~k~~~~~d 262 (367)
T KOG0835|consen 243 VDRLKRKFSDASGKAKGAND 262 (367)
T ss_pred HHHhhHHHHhccCCccchhh
Confidence 88888889998888777664
No 2
>KOG0834|consensus
Probab=100.00 E-value=6.8e-47 Score=356.93 Aligned_cols=233 Identities=38% Similarity=0.653 Sum_probs=216.8
Q ss_pred cccccChhhhc-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccchhhHHHHHH
Q psy2416 24 SNCLLPEEKLN-PTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCV 102 (405)
Q Consensus 24 ~~wlft~~~l~-~tps~~~gi~~~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl 102 (405)
..|+|+.+|++ ++||+.+|++.+.|...|..++.||+++|.+|++++.|+++|++||||||+.+++..+++++||++||
T Consensus 10 ~~w~~s~e~~~~~tpSr~~g~~~~~E~~~r~~~~~fI~elg~~L~~~~~ti~tA~~~~hRFy~~~s~~~~~~~~vA~scl 89 (323)
T KOG0834|consen 10 SRWYFSKEQLEENTPSRRDGIDLKKELRLRQEGAKFIQELGVRLKMPQKTIATAIVIFHRFYMFHSFKKFDPYTVAASCL 89 (323)
T ss_pred cccccCHHHHccCChhhccCCchhHHHHHHHHHHHHHHHHHHHcCCCccchhhhhhhhhhhhhhcccccCcHHHHHHHHH
Confidence 48999999998 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCcCHHHHHHHHHHHHHhhccCCCCcccchhHhhHHHHHHHHHHHHHHHHcCcceeeCChHHHHHHHHHHhC
Q psy2416 103 CLASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLG 182 (405)
Q Consensus 103 ~LA~K~ee~~~~l~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~E~~iL~~L~F~l~~~~P~~~l~~~l~~l~ 182 (405)
|||+|+||++++++|||.+.+.+.+... +..++.|++.++.|+.+|..||++|+|||+|.|||.||.+|++.++
T Consensus 90 fLAgKvEetp~kl~dIi~~s~~~~~~~~------~~~~~~~~~~~~~Iv~~E~~lL~tl~Fdl~v~hPy~~ll~~~k~l~ 163 (323)
T KOG0834|consen 90 FLAGKVEETPRKLEDIIKVSYRYLNPKD------LELEEVYWELKERIVQLELLLLETLGFDLNVEHPYKYLLKYLKKLK 163 (323)
T ss_pred HHHhhcccCcccHHHHHHHHHHHcCccc------ccHHHHHHHHHHHHHHHHHHHHHHccCceeccCchHHHHHHHHHhh
Confidence 9999999999999999999988765311 3456789999999999999999999999999999999999999998
Q ss_pred CCccH--HHHHHH-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCCCCCC--Ccchhhhhh--cchhhHHHHHHHHHH
Q psy2416 183 CEKNQ--KLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPR--NPAWYSLFH--VLESDIQDVCKRILR 255 (405)
Q Consensus 183 ~~~~~--~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~--~~~w~~~~~--~~~~~l~~~~~~il~ 255 (405)
.+.+. .+.++| .|++|++.+.+||.|.|.+||+|||++|+.+.++++|. ...||..|+ ++.++|.+++.++++
T Consensus 164 ~~~~~~~~~a~~Aw~~~nD~~~t~~cL~y~p~~IAva~i~lA~~~~~~~~~~~~~~~w~~~~d~~vt~e~l~~i~~~~l~ 243 (323)
T KOG0834|consen 164 ADENLKQPLAQAAWNFVNDSLRTTLCLQYSPHSIAVACIHLAAKLLGVELPSDTDKRWWREFDETVTNELLDDICHEFLD 243 (323)
T ss_pred hhhhccccHHHHHHHHhchhheeeeeEeecCcEEEeehhhHHHHHcCCCCCCCcccchhhhhcccCCHHHHHHHHHHHHH
Confidence 87542 589999 99999999999999999999999999999999998764 236999998 999999999999999
Q ss_pred HhcCCCC
Q psy2416 256 LYTRPKA 262 (405)
Q Consensus 256 ly~~~~~ 262 (405)
+|.....
T Consensus 244 ~y~~~~~ 250 (323)
T KOG0834|consen 244 LYEQTPQ 250 (323)
T ss_pred HHhhccc
Confidence 9988654
No 3
>TIGR00569 ccl1 cyclin ccl1. University).
Probab=100.00 E-value=1.3e-38 Score=301.81 Aligned_cols=222 Identities=23% Similarity=0.306 Sum_probs=184.9
Q ss_pred cccccccccC-hhhhcCC-------------------CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC--CCHHHHHHHH
Q psy2416 20 ALSLSNCLLP-EEKLNPT-------------------PSMLDGLDPEVETDLRIIGCELIQTAGILLK--LPQVAMATGQ 77 (405)
Q Consensus 20 ~~~~~~wlft-~~~l~~t-------------------ps~~~gi~~~~e~~~R~~~v~~I~~v~~~L~--L~~~t~~~A~ 77 (405)
..|..+|+|+ +++|... +....+++.++|..++..++.+|.++|..|+ ||+.|++||+
T Consensus 4 StQ~r~W~F~~~~~L~~~R~~~N~~~~~~~~~~~~~~~~~~~~Lt~eeE~~l~~~y~~~i~~~~~~lkp~Lpq~viaTAi 83 (305)
T TIGR00569 4 SSQKRHWTFTSEEQLQEKRADANAKFREAHEEEEKVLEAKPIFLTPEEELDLVKYYEKRLLDFCSAFKPTMPTSVVGTAI 83 (305)
T ss_pred CcccccCcCCCHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 4678899999 8776421 1223479999999999999999999999999 9999999999
Q ss_pred HHHHHhcccCCccccchhhHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHhhccCCCCcccchhHhhHHHHHHHHHHHHH
Q psy2416 78 VLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRV 157 (405)
Q Consensus 78 ~~~~Rf~~~~s~~~~~~~lva~acl~LA~K~ee~~~~l~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~E~~i 157 (405)
+||||||..+++..+++++|++||||||||+||+++++.++++... ..+..++++|+++|..|
T Consensus 84 vyf~RFy~~~Sv~~~~p~~Ia~tclfLA~KvEE~~~si~~fv~~~~-----------------~~~~~~~~~Il~~E~~l 146 (305)
T TIGR00569 84 MYFKRFYLNNSVMEYHPKIIMLTCVFLACKVEEFNVSIDQFVGNLK-----------------ETPLKALEQVLEYELLL 146 (305)
T ss_pred HHHhHHhccCchhhcCHHHHHHHHHHHHHhccccCcCHHHHHhhcc-----------------CCchhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999986431 11224578999999999
Q ss_pred HHHcCcceeeCChHHHHHHHHHHhC-----CCccHHHHHHH-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCCCCCC
Q psy2416 158 LKELGFCVHVKHPHKIIVTYLQVLG-----CEKNQKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPR 231 (405)
Q Consensus 158 L~~L~F~l~~~~P~~~l~~~l~~l~-----~~~~~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~ 231 (405)
|++|+|+|.++|||.+|..|+..++ ......+.+.| .|+||+++|++|+.|+|++||+||||+|+..+++++|.
T Consensus 147 L~~L~F~L~V~hPyr~L~~~l~dl~~~l~~~~~~~~l~q~a~~~lndsl~Td~~L~y~Ps~IAlAAI~lA~~~~~~~l~~ 226 (305)
T TIGR00569 147 IQQLNFHLIVHNPYRPLEGFLIDIKTRLPGLENPEYLRKHADKFLNRTLLTDAYLLYTPSQIALAAILHTASRAGLNMES 226 (305)
T ss_pred HHHCCCcEEeeCccHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCceecCCHHHHHHHHHHHHHHHhCCCCcc
Confidence 9999999999999999999987654 22235688999 99999999999999999999999999999999999887
Q ss_pred Ccchhhhhhc--chhhHHH---HHHHHHHHhcCC
Q psy2416 232 NPAWYSLFHV--LESDIQD---VCKRILRLYTRP 260 (405)
Q Consensus 232 ~~~w~~~~~~--~~~~l~~---~~~~il~ly~~~ 260 (405)
. .| +.+++ +.+++.. .+..+..+....
T Consensus 227 ~-~~-e~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 258 (305)
T TIGR00569 227 Y-LT-EQLSVPGNREELPQLIDIMRELRILVKKY 258 (305)
T ss_pred c-ch-hhhcccccHHHHHHHHHHHHHHHHHHHcC
Confidence 4 34 77866 4555444 444444444443
No 4
>KOG0794|consensus
Probab=100.00 E-value=3.6e-37 Score=269.43 Aligned_cols=231 Identities=31% Similarity=0.480 Sum_probs=200.0
Q ss_pred cccccccChhhhcC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccchhhHHHH
Q psy2416 22 SLSNCLLPEEKLNP-TPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMG 100 (405)
Q Consensus 22 ~~~~wlft~~~l~~-tps~~~gi~~~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~a 100 (405)
+.++|+|++++|.. -|--..|++.++...++..+..+|..+|++++|-+.+++||++||.|||.+++++++++.+++.|
T Consensus 10 h~~qwl~dk~el~k~r~~D~r~l~~d~~~~l~i~~~n~I~~lg~~lklRQ~ViATAivY~rRfy~r~S~k~~~p~lla~T 89 (264)
T KOG0794|consen 10 HYQQWLLDKTELLKERQLDLRGLSEDEYSKLKIFMANVIQKLGQHLKLRQRVIATAIVYFRRFYLRKSLKEIEPRLLAPT 89 (264)
T ss_pred hhhhHhcCHHHHhhhccchhhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHH
Confidence 45789999999853 33334478888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCC-cCHHHHHHHHHHHHHhhccCCCCcccchhHhhHHHHHHHHHHHHHHHHcCcceeeCChHHHHHHHHH
Q psy2416 101 CVCLASKIEEAP-RRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQ 179 (405)
Q Consensus 101 cl~LA~K~ee~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~E~~iL~~L~F~l~~~~P~~~l~~~l~ 179 (405)
|||||||+||++ ..++-+++....+...- ..+ +..+......|++||..||+.|++.|.|.||+.-|..+++
T Consensus 90 ClyLAcKvEE~~i~~~r~l~~~a~~L~~~f---~~~----~e~~~~~~~~I~e~Ef~llE~Ld~~LIVhHPYrsL~q~~q 162 (264)
T KOG0794|consen 90 CLYLACKVEECPIVHIRLLVNEAKVLKTRF---SYW----PEKFPYERKDILEMEFYLLEALDCYLIVHHPYRSLLQFVQ 162 (264)
T ss_pred HHHHHhhhhhcchHHHHHHHHHHHHHhhhc---ccc----hhhcCCCcCcchhhhhhHHhhhceeEEEecCCccHHHHHH
Confidence 999999999998 55666666655543321 011 2333444679999999999999999999999999999999
Q ss_pred HhCCCccHHHHHHH-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCCCCCCCcchhhhhhcchhhHHHHHHHHHHHhc
Q psy2416 180 VLGCEKNQKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLFHVLESDIQDVCKRILRLYT 258 (405)
Q Consensus 180 ~l~~~~~~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~~~~~~~~~l~~~~~~il~ly~ 258 (405)
..|... +++.++| .++||++.+++||.|+|.+||+|||++|+...+.+.+ +.|+..+.+|.+.|.+|+.+|+++|.
T Consensus 163 d~gi~d-~~~l~~~W~ivNDSyr~Dl~Ll~PPh~IalAcl~Ia~~~~~k~~~--~~w~~el~vD~ekV~~~v~~I~~lYe 239 (264)
T KOG0794|consen 163 DMGIND-QKLLQLAWSIVNDSYRMDLCLLYPPHQIALACLYIACVIDEKDIP--KAWFAELSVDMEKVKDIVQEILKLYE 239 (264)
T ss_pred Hhcccc-hhhhhhhHhhhcchhhcceeeecCHHHHHHHHHHHHHhhcCCChH--HHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 999853 6789999 9999999999999999999999999999999998765 47999999999999999999999999
Q ss_pred CCCC
Q psy2416 259 RPKA 262 (405)
Q Consensus 259 ~~~~ 262 (405)
..+.
T Consensus 240 ~wk~ 243 (264)
T KOG0794|consen 240 LWKI 243 (264)
T ss_pred HHhh
Confidence 8763
No 5
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=1e-30 Score=240.71 Aligned_cols=175 Identities=31% Similarity=0.485 Sum_probs=153.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccchhhHHHHHHHHHHhhcCCCcCHHHHHHHH
Q psy2416 43 LDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVF 122 (405)
Q Consensus 43 i~~~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~LA~K~ee~~~~l~~i~~~~ 122 (405)
++.+.|..++.++..||..+|.+|+||+.+++||+.||+||+.+++++.++++.|+.||||||||+||++.- |....
T Consensus 36 l~~~~e~~l~i~~~k~i~~l~~~L~lp~~~laTAi~~f~Rf~Lk~sv~e~~~~~vv~tcv~LA~K~ed~~~~---I~i~~ 112 (297)
T COG5333 36 LTLEKELNLVIYYLKLIMDLCTRLNLPQTVLATAILFFSRFYLKNSVEEISLYSVVTTCVYLACKVEDTPRD---ISIES 112 (297)
T ss_pred cchhhhhhHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhhcccccccHHHHHHhheeeeeecccccch---hhHHH
Confidence 777899999999999999999999999999999999999999999999999999999999999999998543 33322
Q ss_pred HHHHHhhccCCCCcccchhHhhHHHHHHHHHHHHHHHHcCcceeeCChHHHHHHHHHHhCCCccHHHHHHH-HHHHHhcC
Q psy2416 123 HHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLGCEKNQKLMQLA-NYMNDSLR 201 (405)
Q Consensus 123 ~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~E~~iL~~L~F~l~~~~P~~~l~~~l~~l~~~~~~~l~~~A-~~l~d~~~ 201 (405)
....+ +| .+.++.+++.|+++|..||++|+|||.|+|||.++..|++.+....+.++.++| .+++|++.
T Consensus 113 ~~~~~------~~----se~~~~sr~~Il~~E~~lLEaL~fd~~V~hPy~~l~~f~~~~q~~~~~~~~~~aw~~inDa~~ 182 (297)
T COG5333 113 FEARD------LW----SEEPKSSRERILEYEFELLEALDFDLHVHHPYKYLEGFLKDLQEKDKYKLLQIAWKIINDALR 182 (297)
T ss_pred HHhhc------cc----cccccccHHHHHHHHHHHHHHcccceEeccccHHHHHHHHHHHhccHHHHHHHHHHHHHhhhh
Confidence 22211 12 223455689999999999999999999999999999999998876555799999 99999999
Q ss_pred CcccccCChHHHHHHHHHHHHHHcCCCCC
Q psy2416 202 TDVFVRYDPETIASACIYLTARKLRIPLP 230 (405)
Q Consensus 202 t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~ 230 (405)
+.+|+.|+|+.||+||+++|+..+|.+++
T Consensus 183 t~~~llypphiIA~a~l~ia~~~~~~~~~ 211 (297)
T COG5333 183 TDLCLLYPPHIIALAALLIACEVLGMPII 211 (297)
T ss_pred ceeeeecChHHHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999999887543
No 6
>KOG0656|consensus
Probab=99.92 E-value=1.3e-24 Score=205.49 Aligned_cols=193 Identities=17% Similarity=0.241 Sum_probs=148.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccc---hhhHHHHHHHHHHhhcCCC-cCHH
Q psy2416 41 DGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHP---METTAMGCVCLASKIEEAP-RRIR 116 (405)
Q Consensus 41 ~gi~~~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~---~~lva~acl~LA~K~ee~~-~~l~ 116 (405)
.+++...-..+|.++++||.++|..+++.+.|+.+|++|||||+..+.+.+.+ +|++|+|||+||+|+||+. +-+-
T Consensus 67 ~~~~~~~~~~~R~~A~~WIl~V~~~~~~~~~~~~LA~NYlDRFls~~~l~k~k~W~lQLlAvaCLsLAsKmeE~~vPll~ 146 (335)
T KOG0656|consen 67 LCVQKLILSSMRKQALDWILKVCEEYNFEPLVFLLAMNYLDRFLSSQKLPKDKPWMLQLLAVACLSLASKMEETDVPLLA 146 (335)
T ss_pred hhcccccccHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHhhcccccCCCchHHHHHHHHHHHHHHHhhcCcCCchhh
Confidence 34455555678999999999999999999999999999999999999999999 9999999999999999985 3344
Q ss_pred HHHHHHHHHHHhhccCCCCcccchhHhhHHHHHHHHHHHHHHHHcCcceeeCChHHHHHHHHHHhCCCcc--HHHHHHH-
Q psy2416 117 DVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLGCEKN--QKLMQLA- 193 (405)
Q Consensus 117 ~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~E~~iL~~L~F~l~~~~P~~~l~~~l~~l~~~~~--~~l~~~A- 193 (405)
|+.-. +.+|....+.|.+||..||.+|+|+++.+||++|+..|+.+++.... ..+...|
T Consensus 147 dl~v~------------------~~~~~feaktI~rmELLVLstL~Wrl~aVTP~sF~~~fl~ki~~~~~~~~~~~~~~s 208 (335)
T KOG0656|consen 147 DLQVE------------------YTDNVFEAKTIQRMELLVLSTLKWRLRAVTPFSFIDHFLSKISQKDHNKHLFLKHAS 208 (335)
T ss_pred hhhhc------------------cccccccHHHHHHHHHHHHhhccccccCCCchHHHHHHHHHcCcccchHHHHHHHHH
Confidence 44321 12344557899999999999999999999999999999999987421 3566677
Q ss_pred HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCC-CCCC-CcchhhhhhcchhhHHHHHH
Q psy2416 194 NYMNDSLRTDVFVRYDPETIASACIYLTARKLRI-PLPR-NPAWYSLFHVLESDIQDVCK 251 (405)
Q Consensus 194 ~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~-~l~~-~~~w~~~~~~~~~~l~~~~~ 251 (405)
.++.......-++.|.|++||+|++..+...... .... .......+.++.+.+..|+.
T Consensus 209 ~~ll~~~~d~~Fl~y~pSviAaa~~~~v~~~~~~l~~~~~~~~~~~~~~l~~e~~~~~~~ 268 (335)
T KOG0656|consen 209 LFLLSVITDIKFLEYPPSVIAAAAILSVSASVDGLDFREYENNLLSLLSLSKEKVNRCYD 268 (335)
T ss_pred HHHHHHhhhhhhhcCChHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhHHhhhcchh
Confidence 7776666677899999999999998777664432 1111 01122223455555555555
No 7
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=99.91 E-value=7.1e-23 Score=196.95 Aligned_cols=219 Identities=14% Similarity=0.200 Sum_probs=181.7
Q ss_pred CCCCCCCccccccccccccChhhhcCCCCC------CCCCCH--------------------HHHHHHHHHHHHHHHHHH
Q psy2416 10 KAPPKPYGKIALSLSNCLLPEEKLNPTPSM------LDGLDP--------------------EVETDLRIIGCELIQTAG 63 (405)
Q Consensus 10 ~~~~~~~~~~~~~~~~wlft~~~l~~tps~------~~gi~~--------------------~~e~~~R~~~v~~I~~v~ 63 (405)
+++++++|... ++++....|.+.-+. ...++. ..|..+ ..+...|.++|
T Consensus 59 ~~~~~RvG~~~----~~~~~~~gl~T~I~~~~~~~~g~~l~~~~~~~~~rl~~~~~~~~~~~~~er~l-~~a~~~I~~~~ 133 (310)
T PRK00423 59 REKRSRVGAPM----TYTIHDKGLSTDIDWRNKDSYGKSISGKNRAQLYRLRKWQRRIRVSNAAERNL-AFALSELDRIA 133 (310)
T ss_pred cCCccccCCCC----CccccCCCCceEeecCCcccccccccHHHHHHHHHHHHHhhhcccCChHhHHH-HHHHHHHHHHH
Confidence 34889999997 666666666543211 111221 112223 55678899999
Q ss_pred HhcCCCHHHHHHHHHHHHHhcccCCccccchhhHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHhhccCCCCcccchhHh
Q psy2416 64 ILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLTTQY 143 (405)
Q Consensus 64 ~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~LA~K~ee~~~~l~~i~~~~~~~~~~~~~~~~~~~~~d~~~ 143 (405)
..|+||..++.+|..||++++..+.++......+++||||+|||.++.|+.+.||+.++. .
T Consensus 134 ~~L~Lp~~v~e~A~~iyk~~~~~~~~rgrs~~~i~AAclYiACR~~~~prtl~eI~~~~~---------------v---- 194 (310)
T PRK00423 134 SQLGLPRSVREEAAVIYRKAVEKGLIRGRSIEGVVAAALYAACRRCKVPRTLDEIAEVSR---------------V---- 194 (310)
T ss_pred HHcCCCHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHcCCCcCHHHHHHHhC---------------C----
Confidence 999999999999999999999999999999999999999999999999999999987642 1
Q ss_pred hHHHHHHHHHHHHHHHHcCcceeeCChHHHHHHHHHHhCCCccHHHHHHH-HHHHHhcCCcccccCChHHHHHHHHHHHH
Q psy2416 144 MTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLGCEKNQKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTA 222 (405)
Q Consensus 144 ~~~~~~i~~~E~~iL~~L~F~l~~~~P~~~l~~~l~~l~~~~~~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~ 222 (405)
.+++|...+..|++.|++++...+|++||.+|+..|++. .++.+.| .+++++..+.++....|..|||||||+|+
T Consensus 195 --~~k~i~~~~~~l~k~L~~~~~~~~p~~~i~r~~~~L~L~--~~v~~~A~~i~~~a~~~~l~~Gr~P~sIAAAaIYlA~ 270 (310)
T PRK00423 195 --SRKEIGRCYRFLLRELNLKLPPTDPIDYVPRFASELGLS--GEVQKKAIEILQKAKEKGLTSGKGPTGLAAAAIYIAS 270 (310)
T ss_pred --CHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHH
Confidence 156888999999999999999999999999999999997 5789999 99999988889999999999999999999
Q ss_pred HHcCCCCCCCcchhhhhhcchhhHHHHHHHHHHHh
Q psy2416 223 RKLRIPLPRNPAWYSLFHVLESDIQDVCKRILRLY 257 (405)
Q Consensus 223 ~~~~~~l~~~~~w~~~~~~~~~~l~~~~~~il~ly 257 (405)
.++|.+... .+.....+++...|...+++|...+
T Consensus 271 ~~~g~~~t~-keIa~v~~Vs~~tI~~~ykel~~~l 304 (310)
T PRK00423 271 LLLGERRTQ-REVAEVAGVTEVTVRNRYKELAEKL 304 (310)
T ss_pred HHhCCCCCH-HHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 999986532 3566777899999999999998754
No 8
>KOG2496|consensus
Probab=99.91 E-value=9.7e-24 Score=192.59 Aligned_cols=190 Identities=22% Similarity=0.263 Sum_probs=147.2
Q ss_pred ccccccccChhhhcCCC-------------------CCCCCCCHHHHHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHH
Q psy2416 21 LSLSNCLLPEEKLNPTP-------------------SMLDGLDPEVETDLRIIGCELIQTAGILLK--LPQVAMATGQVL 79 (405)
Q Consensus 21 ~~~~~wlft~~~l~~tp-------------------s~~~gi~~~~e~~~R~~~v~~I~~v~~~L~--L~~~t~~~A~~~ 79 (405)
.|-..|.||++||+..- .-..-++.+.+..+-.....-+++.|.++. ||..++.||+.|
T Consensus 6 sq~r~W~fte~qL~e~r~~~N~k~i~~~ee~~~~~~~~e~~v~~~ee~tl~k~~E~~l~~f~~k~~p~lp~~Vv~TA~~f 85 (325)
T KOG2496|consen 6 SQYRKWIFTEEQLAERRVDANQKAIQMLEEEAHNLDENEVFVLEAEELTLTKEEELSLVNFYSKFKPNLPTSVVSTAIEF 85 (325)
T ss_pred hhhhcccccHHHHHHHHHHHHHHHHHHHHHhccCCCccchhccccccccccHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 35568999999986520 000013334445555555566677777665 899999999999
Q ss_pred HHHhcccCCccccchhhHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHhhccCCCCcccchhHhhHHHHHHHHHHHHHHH
Q psy2416 80 FQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLK 159 (405)
Q Consensus 80 ~~Rf~~~~s~~~~~~~lva~acl~LA~K~ee~~~~l~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~E~~iL~ 159 (405)
|.|||..++++.+++..|++||+|||||++|..+++.+|++.+. ..-+...+.|++.|..+|+
T Consensus 86 FkRffL~nsvme~~pk~I~~tc~flA~Kieef~ISieqFvkn~~-----------------~~~~k~~e~vLk~E~~llq 148 (325)
T KOG2496|consen 86 FKRFFLENSVMEYSPKIIMATCFFLACKIEEFYISIEQFVKNMN-----------------GRKWKTHEIVLKYEFLLLQ 148 (325)
T ss_pred HHHHHHhcchhhcChHHHHHHHHHHHhhhHhheecHHHHHhhcc-----------------CcccccHHHHHhchHHHHH
Confidence 99999999999999999999999999999999999999997541 0112347899999999999
Q ss_pred HcCcceeeCChHHHHHHHHHHhCC----CccHHHH---HHH-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCC
Q psy2416 160 ELGFCVHVKHPHKIIVTYLQVLGC----EKNQKLM---QLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRI 227 (405)
Q Consensus 160 ~L~F~l~~~~P~~~l~~~l~~l~~----~~~~~l~---~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~ 227 (405)
.|+|+|.+.+|+.-|+.|+-.++. -.|.++. ... .+++.+++|++++.|+|++||+|||..|+...|+
T Consensus 149 sL~f~L~vh~PyRPleGFl~D~kt~l~~~~n~d~~~~~~d~~~fl~~~lltDa~lLytPsQIALaAil~a~~~~~~ 224 (325)
T KOG2496|consen 149 SLKFSLTVHNPYRPLEGFLLDMKTRLPALENPDILRKHDDSKKFLDRALLTDAYLLYTPSQIALAAILHAAGRTGE 224 (325)
T ss_pred hhhhhheecCCCCchHHHHHHHHHHHHhccCHHHHhhhhhHHHHHHHHHHhccceecChHHHHHHHHHHHhccccc
Confidence 999999999999999998865532 1123222 233 6889999999999999999999999777666665
No 9
>KOG0655|consensus
Probab=99.90 E-value=5.9e-24 Score=195.35 Aligned_cols=187 Identities=13% Similarity=0.177 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhccc-CCccccchhhHHHHHHHHHHhhcCC-CcCHHHHHHHHH
Q psy2416 46 EVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYS-KSFVRHPMETTAMGCVCLASKIEEA-PRRIRDVINVFH 123 (405)
Q Consensus 46 ~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~-~s~~~~~~~lva~acl~LA~K~ee~-~~~l~~i~~~~~ 123 (405)
..+.+||.+++||+.+||+-++|..+|+++|+-|||||+.. +.+.+.++|+||+||||||+|+||+ |+++.++..+.
T Consensus 139 dlqp~mRaILlDWlmEVCEvykLHRETFyLAvDy~DRyl~t~~~v~kt~lQLIGitsLFIAAK~EEIYpPKl~eFAyvT- 217 (408)
T KOG0655|consen 139 DLQPQMRAILLDWLMEVCEVYKLHRETFYLAVDYFDRYLETQVEVSKTNLQLIGITSLFIAAKLEEIYPPKLIEFAYVT- 217 (408)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHhhccCccccceeeec-
Confidence 34578999999999999999999999999999999999875 5667889999999999999999997 67888887653
Q ss_pred HHHHhhccCCCCcccchhHhhHHHHHHHHHHHHHHHHcCcceeeCChHHHHHHHHHHhCCCcc----------HHHHHHH
Q psy2416 124 HIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLGCEKN----------QKLMQLA 193 (405)
Q Consensus 124 ~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~E~~iL~~L~F~l~~~~P~~~l~~~l~~l~~~~~----------~~l~~~A 193 (405)
|+.+. -++|+.||..||++|+|+|...|...+|.-|++..+.++. .+..++|
T Consensus 218 ----------------DgAcs--~ddIltmE~iilkal~W~l~PiTii~WL~vylQv~~~n~~~k~l~Pq~~~~efiqia 279 (408)
T KOG0655|consen 218 ----------------DGACS--EDDILTMELIILKALKWELSPITIISWLNVYLQVDALNDAPKVLLPQYSQEEFIQIA 279 (408)
T ss_pred ----------------cCccc--hHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHhcCCCCceeccccchHHHHHHH
Confidence 33332 4699999999999999999999999999999988765431 3567888
Q ss_pred HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCCCCCCCcchhhhhhcchhhHHHHHHHHHHHhcC
Q psy2416 194 NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLFHVLESDIQDVCKRILRLYTR 259 (405)
Q Consensus 194 ~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~~~~~~~~~l~~~~~~il~ly~~ 259 (405)
.+|+.+.+.--++.|+..+||||||+.-.... -....-|+....|++|+.-|.-++..
T Consensus 280 qlLDlc~ldids~~fsYrilaAAal~h~~s~e--------~v~kaSG~~w~~ie~cv~wm~Pf~rv 337 (408)
T KOG0655|consen 280 QLLDLCILDIDSLEFSYRILAAAALCHFTSIE--------VVKKASGLEWDSIEECVDWMVPFVRV 337 (408)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHhHHH--------HHHHcccccHHHHHHHHHHHHHHHHH
Confidence 88888778788999999999999998544311 11233467778888888777665543
No 10
>KOG0653|consensus
Probab=99.88 E-value=2.2e-22 Score=199.31 Aligned_cols=209 Identities=18% Similarity=0.243 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccchhhHHHHHHH-HHHhhcCCCcC-HHHHHHHHHHH
Q psy2416 48 ETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVC-LASKIEEAPRR-IRDVINVFHHI 125 (405)
Q Consensus 48 e~~~R~~~v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~-LA~K~ee~~~~-l~~i~~~~~~~ 125 (405)
...||.+.+|||++|+..|+|.++|+++|++|+|||+....+...++++||++||| ||||+||...+ +.|++.+
T Consensus 154 ~~~mR~iLvdwlvevh~~F~L~~ETL~LaVnliDRfL~~~~v~~~~lqLvgvsalf~IA~K~EE~~~P~v~dlv~i---- 229 (391)
T KOG0653|consen 154 RAKMRAILVDWLVEVHEKFGLSPETLYLAVNLIDRFLSKVKVPLKKLQLVGVSALLSIACKYEEISLPSVEDLVLI---- 229 (391)
T ss_pred cHHHHHHHHHHHHHhhhhcCcCHHHHHHHHHHHHHHHHHhcccHHHhhHHhHHHHHHHHHhhhhccCCccceeEee----
Confidence 35899999999999999999999999999999999999988889999999999977 99999997544 6666543
Q ss_pred HHhhccCCCCcccchhHhhHHHHHHHHHHHHHHHHcCcceeeCChHHHHHHHHHHhCCCccHHHHHHH-HHHHHhcCCcc
Q psy2416 126 RQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLGCEKNQKLMQLA-NYMNDSLRTDV 204 (405)
Q Consensus 126 ~~~~~~~~~~~~~~d~~~~~~~~~i~~~E~~iL~~L~F~l~~~~P~~~l~~~l~~l~~~~~~~l~~~A-~~l~d~~~t~~ 204 (405)
.|+.| .+++|+.||..||.+|+|++.+++|+.||.+|++....+ .+...++ +++..++...-
T Consensus 230 -------------sd~~~--s~~~il~mE~~il~~L~f~l~~p~~~~FLrr~~ka~~~d--~~~~~~~k~~~El~l~d~~ 292 (391)
T KOG0653|consen 230 -------------TDGAY--SREEILRMEKYILNVLEFDLSVPTPLSFLRRFLKAADYD--IKTRTLVKYLLELSLCDYS 292 (391)
T ss_pred -------------eCCcc--chHHHHHHHHHHHhccCeeecCCchHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHhhhH
Confidence 23333 478999999999999999999999999999999988854 4566777 77778888888
Q ss_pred cccCChHHHHHHHHHHHHHHcCCCCCCCcchhhhh----hcchhhHHHHHHHHHHHhcCCCCChhHHHHHHH-HHHHHHH
Q psy2416 205 FVRYDPETIASACIYLTARKLRIPLPRNPAWYSLF----HVLESDIQDVCKRILRLYTRPKANTDELERQIE-VIKKEYQ 279 (405)
Q Consensus 205 ~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~~~----~~~~~~l~~~~~~il~ly~~~~~~~~~l~~~l~-~~r~~~~ 279 (405)
++.++|+.+|+|++++|..+...+. .|...+ |....++.++...+..+........ .+. .+..+|+
T Consensus 293 ~~~~~~s~~aaa~~~~~~~~~~~~~----~w~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ky~ 363 (391)
T KOG0653|consen 293 MLSIPPSSSAAASFTLALRMLSKGD----VWSPTLEHYSGYSESYLFECARSLSALSLSSLQNP-----SLRASVLNKYN 363 (391)
T ss_pred HhccCcHHHHHHHHHHHHHHhccCC----ccCCCCeeccCCCcHHHHHHHHHHHHHHHHhcccc-----hhHHHHHHHhc
Confidence 9999999999999999999988743 466544 5555577777777666333221111 111 5777777
Q ss_pred HHHhhhh
Q psy2416 280 LSKDRKV 286 (405)
Q Consensus 280 ~~k~k~~ 286 (405)
..+....
T Consensus 364 ~~~~~~~ 370 (391)
T KOG0653|consen 364 SSKFLPA 370 (391)
T ss_pred ccccchh
Confidence 7666433
No 11
>COG5024 Cyclin [Cell division and chromosome partitioning]
Probab=99.85 E-value=5.7e-21 Score=187.14 Aligned_cols=189 Identities=18% Similarity=0.217 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccchhhHHHHHHHHHHhhcCCCcC-HHHHHHHHHHHH
Q psy2416 48 ETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRR-IRDVINVFHHIR 126 (405)
Q Consensus 48 e~~~R~~~v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~LA~K~ee~~~~-l~~i~~~~~~~~ 126 (405)
+..||..+++||.+++..|+|-++|+.+|++++|||+....+.-..+++||++|||||||+||+..+ +.+++.++.
T Consensus 209 ~~~mR~~Lv~wlvevH~~F~llpeTL~lainiiDrfLs~~~v~l~k~QLvg~s~LfIa~K~EE~~~p~i~~l~~~t~--- 285 (440)
T COG5024 209 EWSMRSILVDWLVEVHGKFGLLPETLFLAINIIDRFLSSRVVSLEKYQLVGISALFIASKYEEVNCPSIKDLVYATD--- 285 (440)
T ss_pred HHhHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHhHhHhcCHHHHHHHHHHc---
Confidence 4589999999999999999999999999999999999999998889999999999999999998554 666665542
Q ss_pred HhhccCCCCcccchhHhhHHHHHHHHHHHHHHHHcCcceeeCChHHHHHHHHHHhCCCccHHHHHHH-HHHHHhcCCccc
Q psy2416 127 QVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLGCEKNQKLMQLA-NYMNDSLRTDVF 205 (405)
Q Consensus 127 ~~~~~~~~~~~~~d~~~~~~~~~i~~~E~~iL~~L~F~l~~~~P~~~l~~~l~~l~~~~~~~l~~~A-~~l~d~~~t~~~ 205 (405)
..| ..++|+.+|..+|.+|+|++..|.|+-||.++.+.-+.+ ......+ +++.-+....-+
T Consensus 286 --------------g~~--t~~~i~~aE~~ml~~l~f~is~P~P~sFLRriSka~dyd--~~srt~~k~~~e~s~~~~~f 347 (440)
T COG5024 286 --------------GAF--TRDDIIRAERYMLEVLDFNISWPSPMSFLRRISKASDYD--IFSRTPAKFSSEISPVDYKF 347 (440)
T ss_pred --------------ccc--cHHHHHHHHHHHhhhcccccCCCChHHHHHHHHhhcccc--hhhhhhHhhhCCchHhhhhh
Confidence 222 378999999999999999999999999998888776654 2344566 666767777777
Q ss_pred ccCChHHHHHHHHHHHHHHcCCCCCCCcchhhhh----h-cchhhHHHHHHHHHHHhcCCCC
Q psy2416 206 VRYDPETIASACIYLTARKLRIPLPRNPAWYSLF----H-VLESDIQDVCKRILRLYTRPKA 262 (405)
Q Consensus 206 l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~~~----~-~~~~~l~~~~~~il~ly~~~~~ 262 (405)
+.+.|+.+|+||.|+|..+++.. .|-..+ | ++..++..++..+++.......
T Consensus 348 ~~~~~S~~~aaa~~~s~~~~~~~-----~w~~~l~~ySg~y~~~~l~~~~~~~~~~l~~~~~ 404 (440)
T COG5024 348 IQISPSWCAAAAMYLSRKILSQN-----QWDRTLIHYSGNYTNPDLKPLNESNKENLQNPSV 404 (440)
T ss_pred ccCCchHHHHHHHHHHHhhhccC-----CCCccccccCCCCCchhHHHHHHHHHHHhcccch
Confidence 88889999999999999999863 366666 4 7878899999999888666543
No 12
>KOG0654|consensus
Probab=99.85 E-value=1.8e-21 Score=185.76 Aligned_cols=257 Identities=20% Similarity=0.284 Sum_probs=198.6
Q ss_pred CCCCCCCCCCCCccccccccccccChhhh--cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q psy2416 5 KPESLKAPPKPYGKIALSLSNCLLPEEKL--NPTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQR 82 (405)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~wlft~~~l--~~tps~~~gi~~~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~A~~~~~R 82 (405)
.+|+.+.+++.-..+...+.+.+=-.+-. ...|+..+-++.+....||..+|+|.+++++.+++..++++.+.++.+|
T Consensus 88 ~~ds~~~dp~~c~~~~~~I~~~~r~~ei~~~rp~~~~~e~vq~d~t~smrgilvdwlvevsee~r~~~e~l~ls~~~~dr 167 (359)
T KOG0654|consen 88 RIDSVGEDPQMCLKIAAKIYNTLRVSDIKSERPLPSKFEFVQADITPSMRGILVDWLVEVSEEYRLTFETLYLSVNYRDR 167 (359)
T ss_pred chhhcccchHHHHHHHHHHhhcccccchhhccCcccceeeeecCCCcchhhhhhhhhhHHHHHHHhhhhheeecHHHHHH
Confidence 34455555555544443333321111111 1223344445566667899999999999999999999999999999999
Q ss_pred hcccCCccccchhhHHHHHHHHHHhhcCC-CcCHHHHHHHHHHHHHhhccCCCCcccchhHhhHHHHHHHHHHHHHHHHc
Q psy2416 83 FYYSKSFVRHPMETTAMGCVCLASKIEEA-PRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKEL 161 (405)
Q Consensus 83 f~~~~s~~~~~~~lva~acl~LA~K~ee~-~~~l~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~E~~iL~~L 161 (405)
|+....+.+...++++.+|++||+|+||. ++.+.+++..+ |..| +..++..||..||..|
T Consensus 168 fl~~~~~~~~k~ql~g~s~m~I~sk~ee~~~~~~~ef~~it-----------------d~ty--~~~qv~~~~~~il~~l 228 (359)
T KOG0654|consen 168 FLSYKEVNKQKLQLVGISAMLIASKYEEIKEPRVEEFCYIT-----------------DNTY--TYWQVLRMEIDILNAL 228 (359)
T ss_pred HhccCccHHHHHHHhCcccceeeccchhhcchHHHHHHhhh-----------------hhhh--HHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999997 45678887643 4344 4669999999999999
Q ss_pred CcceeeCChHHHHHHHHHHhCCCccHHHHHHH-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCCCCCCCcchhhhhh
Q psy2416 162 GFCVHVKHPHKIIVTYLQVLGCEKNQKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLFH 240 (405)
Q Consensus 162 ~F~l~~~~P~~~l~~~l~~l~~~~~~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~~~~ 240 (405)
.|++..++...|+..|+...... ..++..+| ++...++....++.|.|+.||||||++|...++. -||.+..+..-+
T Consensus 229 ~~~~~~pt~~~~l~~~~~~~~~~-~~~~e~~~~yl~elsll~~~~l~y~PSliAasAv~lA~~~~~~-~pW~~~L~~~T~ 306 (359)
T KOG0654|consen 229 TFELVRPTSKTFLRRFLRVAQTP-ELQVEPLANYLTELSLLDYIFLKYLPSLIAASAVFLARLTLDF-HPWNQTLEDYTG 306 (359)
T ss_pred HHHHhCchHHHHHHHHHHhhcch-hHHHHHHHHHHHHhhhhhHHHhccChHHHHHHHHHHHHhhccC-CCCchhhHHhhc
Confidence 99999999999999998766532 25677888 7777788877899999999999999999999993 233333344448
Q ss_pred cchhhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHhhhhccC
Q psy2416 241 VLESDIQDVCKRILRLYTRPKANTDELERQIEVIKKEYQLSKDRKVLVS 289 (405)
Q Consensus 241 ~~~~~l~~~~~~il~ly~~~~~~~~~l~~~l~~~r~~~~~~k~k~~~~~ 289 (405)
++.++++.|+..|. +|..... .-+.+++++|++.+.+.+..-
T Consensus 307 y~~edl~~~v~~L~-~~l~~~~------~~l~air~ky~~~k~~~Va~~ 348 (359)
T KOG0654|consen 307 YKAEDLKPCVLDLH-LYLNASG------TDLPAIREKYKQSKFKEVALL 348 (359)
T ss_pred ccHHHHHHHHHHHh-cccCCCC------CchHHHHHHhhhhhhhhhhcc
Confidence 99999999999999 7776654 568999999999998877654
No 13
>KOG1597|consensus
Probab=99.82 E-value=1.1e-18 Score=159.24 Aligned_cols=226 Identities=18% Similarity=0.215 Sum_probs=179.9
Q ss_pred CCCCCCCCCCCCCCccccccccccccChhhhcCCCCCCCCCCHHH---------------HHHHHHHHHHHHHHHHHhcC
Q psy2416 3 SHKPESLKAPPKPYGKIALSLSNCLLPEEKLNPTPSMLDGLDPEV---------------ETDLRIIGCELIQTAGILLK 67 (405)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~wlft~~~l~~tps~~~gi~~~~---------------e~~~R~~~v~~I~~v~~~L~ 67 (405)
+|+-|..+.||+++|+.. |+++...+|...-+-..|-.... ...--..+...|..||+.++
T Consensus 44 tfsnd~~~~DPsrvG~~s----NPlL~~g~L~T~I~~g~g~~s~~~s~l~~~Q~~~sm~~~d~~~~~a~~~I~~m~d~~~ 119 (308)
T KOG1597|consen 44 TFSNDDSDADPSRVGASS----NPLLDGGDLSTFISKGTGTSSSFASSLGKAQNRNSMSNSDRVLKAAFKEITAMCDRLS 119 (308)
T ss_pred ccccCCCCCCccccCCCC----CCCCCCCCcceeeecCCCCCHHHHHHHHHHhcccccCCccHHHHHHHHHHHHHHHHhC
Confidence 567778899999999996 99999999876433333322211 11223456778999999999
Q ss_pred CCHHHHHHHHHHHHHhcccCCccccchhhHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHhhccCCCCcccchhHhhHHH
Q psy2416 68 LPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLK 147 (405)
Q Consensus 68 L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~LA~K~ee~~~~l~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 147 (405)
||..+...|..+|++|...+.++......+++||||+||+.++.|+.+.+|..+.. + .+
T Consensus 120 Lp~~I~d~A~~ifk~v~~~k~lrGks~eai~AAclyiACRq~~~pRT~kEI~~~an-v--------------------~k 178 (308)
T KOG1597|consen 120 LPATIKDRANEIFKLVEDSKLLRGKSVEALAAACLYIACRQEDVPRTFKEISAVAN-V--------------------SK 178 (308)
T ss_pred CchHHHHHHHHHHHHHHHhhhhcCccHHHHHHHHHHHHHHhcCCCchHHHHHHHHc-C--------------------CH
Confidence 99999999999999999999999999999999999999999999999999998763 2 14
Q ss_pred HHHHHHHHHHHHHcCcceeeC--ChHHHHHHHHHHhCCCccHHHHHHH-HHHHHhcCCcccccCChHHHHHHHHHHHHHH
Q psy2416 148 TQVIKAERRVLKELGFCVHVK--HPHKIIVTYLQVLGCEKNQKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARK 224 (405)
Q Consensus 148 ~~i~~~E~~iL~~L~F~l~~~--~P~~~l~~~l~~l~~~~~~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~ 224 (405)
++|-++=..|++.|+-..... +.-+|+.+||..|++. ..+...| ++..-+-..+++-...|-.||||+|||++.+
T Consensus 179 KEIgr~~K~i~~~l~~s~~~~s~~t~~~m~RFCs~L~L~--~~~q~aA~e~a~ka~~~~~~~gRsPiSIAAa~IYmisql 256 (308)
T KOG1597|consen 179 KEIGRCVKLIGEALETSVDLISISTGDFMPRFCSNLGLP--KSAQEAATEIAEKAEEMDIRAGRSPISIAAAAIYMISQL 256 (308)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHh
Confidence 566666677888877666554 4789999999999997 5677777 7776666566777799999999999999999
Q ss_pred cCCCCCCCcchhhhhhcchhhHHHHHHHHHHH
Q psy2416 225 LRIPLPRNPAWYSLFHVLESDIQDVCKRILRL 256 (405)
Q Consensus 225 ~~~~l~~~~~w~~~~~~~~~~l~~~~~~il~l 256 (405)
...+.+. .+.-.+.||.+..|...+++|+..
T Consensus 257 s~~kkt~-keI~~vtgVaE~TIr~sYK~Lyp~ 287 (308)
T KOG1597|consen 257 SDEKKTQ-KEIGEVTGVAEVTIRNSYKDLYPH 287 (308)
T ss_pred ccCcccH-HHHHHHhhhhHHHHHHHHHHHhhc
Confidence 8864332 355677789999999999888654
No 14
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. Cyclins contain two domains of similar all-alpha fold, of which this entry is associated with the N-terminal domain.; PDB: 2W2H_B 3RGF_B 1KXU_A 1JKW_A 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D ....
Probab=99.72 E-value=2.3e-17 Score=138.31 Aligned_cols=102 Identities=29% Similarity=0.467 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccchhhHHHHHHHHHHhhcCC-CcCHHHHHHHHHH
Q psy2416 46 EVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEA-PRRIRDVINVFHH 124 (405)
Q Consensus 46 ~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~LA~K~ee~-~~~l~~i~~~~~~ 124 (405)
+.....|..+++||.+++..++++..|+++|+.|||||+....+...+++++++|||+||||++|. +..+.+++..+
T Consensus 25 ~~~~~~r~~~~~~i~~~~~~~~l~~~~~~~A~~~~dr~~~~~~~~~~~~~li~~~cl~lA~K~~e~~~~~~~~~~~~~-- 102 (127)
T PF00134_consen 25 EITPEMRQIIIDWIIELCQRLKLSPETLHLAIYLFDRFLSKRPVNRSKLQLIALACLFLASKMEEDNPPSISDLIRIS-- 102 (127)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTT-BHHHHHHHHHHHHHHHTTS-TTCCGHHHHHHHHHHHHHHHHTSS--HHHHHHHHT--
T ss_pred hcCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhcccccchhhhhhhhHHHHhhhhhccccchHHHHHHHH--
Confidence 456689999999999999999999999999999999999999999999999999999999999998 66778887643
Q ss_pred HHHhhccCCCCcccchhHhhHHHHHHHHHHHHHHHHcCccee
Q psy2416 125 IRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGFCVH 166 (405)
Q Consensus 125 ~~~~~~~~~~~~~~~d~~~~~~~~~i~~~E~~iL~~L~F~l~ 166 (405)
+. ...+++|+.||..||.+|+|+++
T Consensus 103 ---------------~~--~~~~~~i~~~E~~iL~~L~f~ln 127 (127)
T PF00134_consen 103 ---------------DN--TFTKKDILEMEREILSALNFDLN 127 (127)
T ss_dssp ---------------TT--SSHHHHHHHHHHHHHHHTTT---
T ss_pred ---------------cC--CCCHHHHHHHHHHHHHHCCCCcC
Confidence 11 22378999999999999999985
No 15
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=99.71 E-value=7.7e-16 Score=144.66 Aligned_cols=182 Identities=19% Similarity=0.286 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccchhhHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHhhccC
Q psy2416 53 IIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQK 132 (405)
Q Consensus 53 ~~~v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~LA~K~ee~~~~l~~i~~~~~~~~~~~~~~ 132 (405)
..+...|..++..|+||..+..+|+.+|...+..+.++....+-+++||||+||+.++.|+.+.+|..+..
T Consensus 98 ~~a~~~l~~~~~~l~LP~~v~e~A~~iyr~a~~~~l~rGRsie~v~AA~iY~acR~~~~prtl~eIa~a~~--------- 168 (285)
T COG1405 98 ITALEELERIASALGLPESVRETAARIYRKAVDKGLLRGRSIESVAAACIYAACRINGVPRTLDEIAKALG--------- 168 (285)
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCcCCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHC---------
Confidence 34567899999999999999999999999999999999999999999999999999999999999988753
Q ss_pred CCCcccchhHhhHHHHHHHHHHHHHHHHcCcceeeCChHHHHHHHHHHhCCCccHHHHHHH-HHHHHhcCCcccccCChH
Q psy2416 133 SITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLGCEKNQKLMQLA-NYMNDSLRTDVFVRYDPE 211 (405)
Q Consensus 133 ~~~~~~~d~~~~~~~~~i~~~E~~iL~~L~F~l~~~~P~~~l~~~l~~l~~~~~~~l~~~A-~~l~d~~~t~~~l~~~Ps 211 (405)
+ .+.+|..+...+...|+-.+....|.+|+.+|+..|++. .++...| .++..+....+...-.|.
T Consensus 169 ------V------~~kei~rtyr~~~~~L~l~~~~~~p~~yi~rf~s~L~l~--~~v~~~a~ei~~~~~~~g~~~Gk~P~ 234 (285)
T COG1405 169 ------V------SKKEIGRTYRLLVRELKLKIPPVDPSDYIPRFASKLGLS--DEVRRKAIEIVKKAKRAGLTAGKSPA 234 (285)
T ss_pred ------C------CHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHhCcccCCCch
Confidence 1 146888999999999999999899999999999999997 6889999 999998888888899999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcchhhhhhcchhhHHHHHHHHHHHhc
Q psy2416 212 TIASACIYLTARKLRIPLPRNPAWYSLFHVLESDIQDVCKRILRLYT 258 (405)
Q Consensus 212 ~IAaA~i~lA~~~~~~~l~~~~~w~~~~~~~~~~l~~~~~~il~ly~ 258 (405)
.||+||||+|+.++++.... .......|+++..|.+-+.+|.+...
T Consensus 235 glAaaaiy~as~l~~~~~tq-~eva~v~~vtevTIrnrykel~~~~~ 280 (285)
T COG1405 235 GLAAAAIYLASLLLGERRTQ-KEVAKVAGVTEVTIRNRYKELADALD 280 (285)
T ss_pred hHHHHHHHHHHHHhCCchHH-HHHHHHhCCeeeHHHHHHHHHHHhhc
Confidence 99999999999999975422 35667779999999999988877543
No 16
>cd00043 CYCLIN Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB is a transcription factor that binds the TATA box. Cyclins, TFIIB and RB contain 2 copies of the domain.
Probab=99.44 E-value=3.4e-13 Score=104.49 Aligned_cols=87 Identities=21% Similarity=0.341 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccchhhHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHhhcc
Q psy2416 52 RIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQ 131 (405)
Q Consensus 52 R~~~v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~LA~K~ee~~~~l~~i~~~~~~~~~~~~~ 131 (405)
|..+++||.+++..++++..+..+|+.|+++|+..+.+..++++++++||||||||+++.+..+.+++.....
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ia~a~l~lA~k~~~~~~~~~~~~~~~~~------- 74 (88)
T cd00043 2 RPTPLDFLRRVAKALGLSPETLTLAVNLLDRFLLDYSVLGRSPSLVAAAALYLAAKVEEIPPWLKDLVHVTGY------- 74 (88)
T ss_pred cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHcCCCCCHHHHhHHhCC-------
Confidence 4567899999999999999999999999999999999999999999999999999999998899999875411
Q ss_pred CCCCcccchhHhhHHHHHHHHHHHHHH
Q psy2416 132 KSITPMLLTTQYMTLKTQVIKAERRVL 158 (405)
Q Consensus 132 ~~~~~~~~d~~~~~~~~~i~~~E~~iL 158 (405)
. ..++|..+|..||
T Consensus 75 ------------~-~~~~i~~~e~~il 88 (88)
T cd00043 75 ------------A-TEEEILRMEKLLL 88 (88)
T ss_pred ------------C-CHHHHHHHHHHhC
Confidence 0 3668999998875
No 17
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma. A helical domain present in cyclins and TFIIB (twice) and Retinoblastoma (once). A protein recognition domain functioning in cell-cycle and transcription control.
Probab=99.33 E-value=3.3e-12 Score=97.79 Aligned_cols=83 Identities=19% Similarity=0.350 Sum_probs=71.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccchhhHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHhhccCCCCc
Q psy2416 57 ELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKSITP 136 (405)
Q Consensus 57 ~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~LA~K~ee~~~~l~~i~~~~~~~~~~~~~~~~~~ 136 (405)
+||.+++..++++..+..+|+.|+++|+..+.+..++++++|+||||||||++|.++...++...+.
T Consensus 1 ~~l~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~ia~a~l~lA~k~~~~~~~~~~~~~~~~------------- 67 (83)
T smart00385 1 DFLRRVCKALNLDPETLNLAVNLLDRFLSDYKFLKYSPSLIAAAALYLAAKTEEIPPWTKELVHYTG------------- 67 (83)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcCCCCchhHhHhhC-------------
Confidence 5999999999999999999999999999977777899999999999999999999877788765431
Q ss_pred ccchhHhhHHHHHHHHHHHHHHH
Q psy2416 137 MLLTTQYMTLKTQVIKAERRVLK 159 (405)
Q Consensus 137 ~~~d~~~~~~~~~i~~~E~~iL~ 159 (405)
+ ...++|..+|..||+
T Consensus 68 ------~-~~~~~i~~~~~~il~ 83 (83)
T smart00385 68 ------Y-FTEEEILRMEKLLLE 83 (83)
T ss_pred ------C-CCHHHHHHHHHHHhC
Confidence 0 125689999999873
No 18
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This is the C-terminal domain of cyclins.; GO: 0005634 nucleus; PDB: 3QHR_D 3QHW_B 1W98_B 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D 2IW9_D ....
Probab=99.17 E-value=1.2e-11 Score=101.89 Aligned_cols=112 Identities=23% Similarity=0.347 Sum_probs=83.2
Q ss_pred CChHHHHHHHHHHhCCCccHHHHHHH-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCCCCCCCcchhhhhhcchhhH
Q psy2416 168 KHPHKIIVTYLQVLGCEKNQKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLFHVLESDI 246 (405)
Q Consensus 168 ~~P~~~l~~~l~~l~~~~~~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~~~~~~~~~l 246 (405)
|||++||..|++..+. ++++..+| ++++.++.+..++.|+|++||+|||++|..+++.+.++...+....|++.++|
T Consensus 1 PTp~~Fl~~~~~~~~~--~~~~~~~a~~l~el~l~~~~fl~~~PS~iAaAai~lA~~~~~~~~~~~~~l~~~t~~~~~~l 78 (118)
T PF02984_consen 1 PTPYDFLRRFLKISNA--DQEVRNLARYLLELSLLDYEFLQYPPSVIAAAAILLARKILGKEPPWPESLEKLTGYDKEDL 78 (118)
T ss_dssp --HHHHHHHHHTSSSH--HHHHHHHHHHHHHHHHHSHHHTTS-HHHHHHHHHHHHHHHHHSSTCSHHHHHHHHTS-HHHH
T ss_pred CcHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhCccccCCccchhhcCCCHHHH
Confidence 6899999999654333 36789999 99999999999999999999999999999998853333223344558999999
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHhhhhc
Q psy2416 247 QDVCKRILRLYTRPKANTDELERQIEVIKKEYQLSKDRKVL 287 (405)
Q Consensus 247 ~~~~~~il~ly~~~~~~~~~l~~~l~~~r~~~~~~k~k~~~ 287 (405)
.+|+..|.+++.... .....+++++|...+...+.
T Consensus 79 ~~c~~~i~~~~~~~~------~~~~~ai~~Kys~~~~~~vs 113 (118)
T PF02984_consen 79 KECIELIQELLSKAS------NSKLQAIRKKYSSQKFSSVS 113 (118)
T ss_dssp HHHHHHHHHHHHHCC------GSSCTHHHHHTTSGGGTTGG
T ss_pred HHHHHHHHHHHHhcC------CccchHHHHHhCccccCCcc
Confidence 999999999987544 23456777777776665443
No 19
>KOG0835|consensus
Probab=99.03 E-value=9.4e-09 Score=95.74 Aligned_cols=56 Identities=27% Similarity=0.335 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCCCHHH--HHHHHHHHHHhcccCCccccchhhHHHHHHHHHHhhcCCC
Q psy2416 57 ELIQTAGILLKLPQVA--MATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAP 112 (405)
Q Consensus 57 ~~I~~v~~~L~L~~~t--~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~LA~K~ee~~ 112 (405)
.+|+.....|++++.- +..|++|++--+....++.|.+.+|||||+|||+..+|+|
T Consensus 143 klii~YLqtL~~~~~~~l~Q~~wNfmNDslRT~v~vry~pe~iACaciyLaAR~~eIp 200 (367)
T KOG0835|consen 143 KLIIMYLQTLQLPPNLKLLQAAWNFMNDSLRTDVFVRYSPESIACACIYLAARNLEIP 200 (367)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHhhhhccccceeeecCHHHHHHHHHHHHHhhhcCC
Confidence 4577778889998654 8999999999999999999999999999999999999986
No 20
>KOG1598|consensus
Probab=98.81 E-value=1.7e-08 Score=100.24 Aligned_cols=154 Identities=15% Similarity=0.141 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccchhhHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHhhccCC
Q psy2416 54 IGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKS 133 (405)
Q Consensus 54 ~~v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~LA~K~ee~~~~l~~i~~~~~~~~~~~~~~~ 133 (405)
.+-..|.+++..|+|+. .+.+|..+|.--...+..+......|.++|+||+|..|.++.-+-|+..+..
T Consensus 69 n~r~~i~~~~~~l~l~~-~~~~a~~~~k~a~~~nftkGr~~~~vvasClY~vcR~e~t~hlliDfS~~Lq---------- 137 (521)
T KOG1598|consen 69 NARRLIEELTERLNLGN-KTEVAFNFFKLAPDRNFTKGRRSTEVVAACLYLVCRLEKTDHLLIDFSSYLQ---------- 137 (521)
T ss_pred HHHhHHHHHHHhcCcch-HHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhhCCceEEEEeccceE----------
Confidence 34568999999999999 9999999999999999889999999999999999999998755444433210
Q ss_pred CCcccchhHhhHHHHHHHHHHHHHHHHcCcc---eeeCChHHHHHHHHHHhCC-CccHHHHHHH-HHHHHhcCCcccccC
Q psy2416 134 ITPMLLTTQYMTLKTQVIKAERRVLKELGFC---VHVKHPHKIIVTYLQVLGC-EKNQKLMQLA-NYMNDSLRTDVFVRY 208 (405)
Q Consensus 134 ~~~~~~d~~~~~~~~~i~~~E~~iL~~L~F~---l~~~~P~~~l~~~l~~l~~-~~~~~l~~~A-~~l~d~~~t~~~l~~ 208 (405)
++ -| ++-.+=..|...|.-+ +....|.-|+.+|...|.. +.+.++...| .+++-....++...-
T Consensus 138 -----v~-Vy-----~LG~~~l~l~~~L~i~en~~plvDpsL~i~Rfa~~L~~g~~~~~Vv~~a~~L~~rMkrdwm~tGR 206 (521)
T KOG1598|consen 138 -----VS-VY-----DLGSNFLEVTDSLSIGENVSPLVDPSLYIVRFSCRLLFGDKTEDVAKTATRLAQRMKRDWMQTGR 206 (521)
T ss_pred -----Ee-hh-----hhhHHHHHHHHHhccccccccccCcceeeechhHhhhcCCchHHHHHHHHHHHHHHHHHHHHhCC
Confidence 00 00 2222334566666666 6667899999999887754 3446788899 888888888999999
Q ss_pred ChHHHHHHHHHHHHHHcCCCC
Q psy2416 209 DPETIASACIYLTARKLRIPL 229 (405)
Q Consensus 209 ~Ps~IAaA~i~lA~~~~~~~l 229 (405)
.|+.|+-|||++|+.++|++.
T Consensus 207 RPsglcGAaLliAar~h~~~r 227 (521)
T KOG1598|consen 207 RPSGLCGAALLIAARMHGFRR 227 (521)
T ss_pred CccchhHHHHHHHHHHcCccc
Confidence 999999999999999999864
No 21
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. In eukaryotes, transcription initiation of all protein encoding genes involves the polymerase II system. This sytem is modulated by both general and specific transcription factors. The general factors (which include TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIG and TFIIH) operate through common promoter elements, such as the TATA box. Transcription factor IIB (TFIIB) is of central importance in transcription of class II genes. It associates with TFIID-TFIIA bound to DNA (the DA complex) to form a ternary TFIID-IIA-IBB (DAB) complex, which is recognised by RNA polymerase II [, ]. TFIIB comprises ~315-340 residues and contains an imperfect C-terminal repeat of a 75-residue domain that may contribute to the symmetry of the folded protein. The basal archaeal transcription machinery resembles that of the eukaryotic polymerase II system and includes a homologue of TFIIB []. This entry represents a cyclin-like domain which is found repeated in the C-terminal region of a variety of eukaryotic TFIIB's and their archaeal counterparts. These domains individually form the typical cyclin fold, and in the transcription complex they straddle the C-terminal region of the TATA-binding protein - an interaction essential for the formation of the transcription initiation complex [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2PHG_A 1C9B_Q 1TFB_A 1VOL_A 3K7A_M 1AIS_B 1D3U_B.
Probab=98.66 E-value=1.2e-07 Score=70.90 Aligned_cols=64 Identities=17% Similarity=0.328 Sum_probs=57.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccchhhHHHHHHHHHHhhcCCCcCHHHHHHHH
Q psy2416 59 IQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVF 122 (405)
Q Consensus 59 I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~LA~K~ee~~~~l~~i~~~~ 122 (405)
|..+|..|+||..+..+|..+++.....+-.....+..+++||||+||+.++.++++.||..++
T Consensus 1 I~r~~~~L~L~~~v~~~A~~i~~~~~~~~~~~Gr~~~~iaAA~iY~acr~~~~~~t~~eIa~~~ 64 (71)
T PF00382_consen 1 IPRICSKLGLPEDVRERAKEIYKKAQERGLLKGRSPESIAAACIYLACRLNGVPRTLKEIAEAA 64 (71)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHHHHTTTSTTS-HHHHHHHHHHHHHHHTTSSSSHHHHHHHC
T ss_pred ChHHHhHcCCCHHHHHHHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHcCCCcCHHHHHHHh
Confidence 5689999999999999999999999998888899999999999999999999999999998754
No 22
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma. A helical domain present in cyclins and TFIIB (twice) and Retinoblastoma (once). A protein recognition domain functioning in cell-cycle and transcription control.
Probab=98.60 E-value=1.7e-07 Score=71.36 Aligned_cols=80 Identities=25% Similarity=0.379 Sum_probs=67.6
Q ss_pred HHHHHHHHHhCCCccHHHHHHH-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCCCCCCCcchhhhhhc-chhhHHHH
Q psy2416 172 KIIVTYLQVLGCEKNQKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLFHV-LESDIQDV 249 (405)
Q Consensus 172 ~~l~~~l~~l~~~~~~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~~~~~-~~~~l~~~ 249 (405)
+||.+++..++++ .++..+| .+++..+....++.++|+.||+|||++|++..+.+. +..++....++ +.++|.++
T Consensus 1 ~~l~~~~~~~~~~--~~~~~~a~~~~~~~l~~~~~~~~~~~~ia~a~l~lA~k~~~~~~-~~~~~~~~~~~~~~~~i~~~ 77 (83)
T smart00385 1 DFLRRVCKALNLD--PETLNLAVNLLDRFLSDYKFLKYSPSLIAAAALYLAAKTEEIPP-WTKELVHYTGYFTEEEILRM 77 (83)
T ss_pred CHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcCCC-CchhHhHhhCCCCHHHHHHH
Confidence 3788899999886 6899999 999888876777889999999999999999999863 44567777788 99999998
Q ss_pred HHHHH
Q psy2416 250 CKRIL 254 (405)
Q Consensus 250 ~~~il 254 (405)
...|+
T Consensus 78 ~~~il 82 (83)
T smart00385 78 EKLLL 82 (83)
T ss_pred HHHHh
Confidence 88876
No 23
>cd00043 CYCLIN Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB is a transcription factor that binds the TATA box. Cyclins, TFIIB and RB contain 2 copies of the domain.
Probab=98.55 E-value=3.6e-07 Score=70.26 Aligned_cols=84 Identities=21% Similarity=0.266 Sum_probs=69.8
Q ss_pred eCChHHHHHHHHHHhCCCccHHHHHHH-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCCCCCCCcchhhhhhc-chh
Q psy2416 167 VKHPHKIIVTYLQVLGCEKNQKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLFHV-LES 244 (405)
Q Consensus 167 ~~~P~~~l~~~l~~l~~~~~~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~~~~~-~~~ 244 (405)
.++|.+||.+++..++++ .++..+| .+++..+....+..+.|+.||+|||++|+++.+. .++..++....+. +.+
T Consensus 2 ~~~~~~~l~~~~~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~ia~a~l~lA~k~~~~-~~~~~~~~~~~~~~~~~ 78 (88)
T cd00043 2 RPTPLDFLRRVAKALGLS--PETLTLAVNLLDRFLLDYSVLGRSPSLVAAAALYLAAKVEEI-PPWLKDLVHVTGYATEE 78 (88)
T ss_pred cchHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHcCC-CCCHHHHhHHhCCCCHH
Confidence 367999999999999886 6788999 9999988888888999999999999999999988 3333456666677 888
Q ss_pred hHHHHHHHH
Q psy2416 245 DIQDVCKRI 253 (405)
Q Consensus 245 ~l~~~~~~i 253 (405)
+|..+...|
T Consensus 79 ~i~~~e~~i 87 (88)
T cd00043 79 EILRMEKLL 87 (88)
T ss_pred HHHHHHHHh
Confidence 888777665
No 24
>KOG4164|consensus
Probab=98.39 E-value=4.2e-07 Score=86.55 Aligned_cols=102 Identities=21% Similarity=0.364 Sum_probs=82.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccchhhHHHHHHHHHHhhcCCCc-CHHHHHHHHHHHHHhhccCCCCc
Q psy2416 58 LIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPR-RIRDVINVFHHIRQVMNQKSITP 136 (405)
Q Consensus 58 ~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~LA~K~ee~~~-~l~~i~~~~~~~~~~~~~~~~~~ 136 (405)
-|.+++...++...|+++|.+||......+-+.+.+..++|-|||+||+|+.|... .++.+|...
T Consensus 388 EMr~l~~d~~id~~TVa~AyVYFEKliLkglisK~NRKlcAGAclLlaaKmnD~Kks~vKslIek~-------------- 453 (497)
T KOG4164|consen 388 EMRELGEDCGIDVVTVAMAYVYFEKLILKGLISKQNRKLCAGACLLLAAKMNDLKKSTVKSLIEKL-------------- 453 (497)
T ss_pred HHHHhhhccCccceeehhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHH--------------
Confidence 47788888999999999999999999999999999999999999999999997643 245554432
Q ss_pred ccchhHhhHHHHHHHHHHHHHHHHcCcceeeCChHHHHHHH
Q psy2416 137 MLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTY 177 (405)
Q Consensus 137 ~~~d~~~~~~~~~i~~~E~~iL~~L~F~l~~~~P~~~l~~~ 177 (405)
++.|-..+.+++..|.-||-+|.|-|+++ -|+.+.+|
T Consensus 454 ---Ee~fR~nrrdLia~Ef~VlvaLefaL~~~-~~eVlPHy 490 (497)
T KOG4164|consen 454 ---EEQFRLNRRDLIAFEFPVLVALEFALHLP-EHEVLPHY 490 (497)
T ss_pred ---HHHhcccHHhhhhhhhhHHHhhhhhccCC-hhhcchHH
Confidence 33455668999999999999999999864 33344333
No 25
>KOG4368|consensus
Probab=98.23 E-value=5.9e-06 Score=82.32 Aligned_cols=15 Identities=7% Similarity=0.186 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHHhcC
Q psy2416 245 DIQDVCKRILRLYTR 259 (405)
Q Consensus 245 ~l~~~~~~il~ly~~ 259 (405)
..+.+...+-.+|..
T Consensus 552 ~sErl~~aveAfys~ 566 (757)
T KOG4368|consen 552 PSERLLAAVEAFYSP 566 (757)
T ss_pred hHHHHHHHHHHhhcc
Confidence 344445555555655
No 26
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry includes cyclin PHO80 and other cyclins that partner with the cyclin-dependent kinase (CDK) PHO85. The PHO80/PHO85 cyclin-cdk complex is used for a regulatory process other than cell-cycle control []. This entry also includes other PHO80-like cyclins that are involved in the cell-cycle control. They belong to the P/U family and interact preferentially with CDKA1 [].; GO: 0019901 protein kinase binding, 0000079 regulation of cyclin-dependent protein kinase activity; PDB: 2PK9_D 2PMI_D.
Probab=98.10 E-value=2.5e-05 Score=67.22 Aligned_cols=90 Identities=12% Similarity=0.084 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcc---c--CCccccchhhHHHHHHHHHHhhc-CCCcCHHHHHHHHHHHHHh
Q psy2416 55 GCELIQTAGILLKLPQVAMATGQVLFQRFYY---S--KSFVRHPMETTAMGCVCLASKIE-EAPRRIRDVINVFHHIRQV 128 (405)
Q Consensus 55 ~v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~---~--~s~~~~~~~lva~acl~LA~K~e-e~~~~l~~i~~~~~~~~~~ 128 (405)
+.+||.++....+++..++-.|.+|++|+.. . ..+.....+-+.++||.||+|+- |..-.-.....+..
T Consensus 54 i~~fl~ri~~~~~~s~~~~i~aliYl~Rl~~~~~~~~~~~~~~~~~Rl~l~alilA~K~~~D~~~~n~~~a~v~g----- 128 (149)
T PF08613_consen 54 IRDFLSRILKYTQCSPECLILALIYLDRLRQRSRKPNIPLNSSNIHRLFLTALILASKFLDDNTYSNKSWAKVGG----- 128 (149)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHHH--H-TT---STTTHHHHHHHHHHHHHHHH-SS---HHHHHHHHT-----
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHhhcccccccHHHHHhhcC-----
Confidence 5678999999999999999999999999988 2 23456778889999999999975 44444344433220
Q ss_pred hccCCCCcccchhHhhHHHHHHHHHHHHHHHHcCcce
Q psy2416 129 MNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGFCV 165 (405)
Q Consensus 129 ~~~~~~~~~~~d~~~~~~~~~i~~~E~~iL~~L~F~l 165 (405)
...+++-.||..+|..|+|+|
T Consensus 129 ----------------is~~eln~lE~~fL~~l~~~L 149 (149)
T PF08613_consen 129 ----------------ISLKELNELEREFLKLLDYNL 149 (149)
T ss_dssp ----------------S-HHHHHHHHHHHHHHTTT--
T ss_pred ----------------CCHHHHHHHHHHHHHHCCCcC
Confidence 125699999999999999986
No 27
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=97.94 E-value=4.3e-05 Score=73.86 Aligned_cols=67 Identities=15% Similarity=0.058 Sum_probs=61.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccchhhHHHHHHHHHHhhcCCCcCHHHHHHHH
Q psy2416 56 CELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVF 122 (405)
Q Consensus 56 v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~LA~K~ee~~~~l~~i~~~~ 122 (405)
.++|..+|..|+|+..+..+|..+++............+..|++|||||||+..+.++.+++|..++
T Consensus 220 ~~~i~r~~~~L~L~~~v~~~A~~i~~~a~~~~l~~Gr~P~sIAAAaIYlA~~~~g~~~t~keIa~v~ 286 (310)
T PRK00423 220 IDYVPRFASELGLSGEVQKKAIEILQKAKEKGLTSGKGPTGLAAAAIYIASLLLGERRTQREVAEVA 286 (310)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHc
Confidence 5899999999999999999999999999877777889999999999999999999999999997764
No 28
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. In eukaryotes, transcription initiation of all protein encoding genes involves the polymerase II system. This sytem is modulated by both general and specific transcription factors. The general factors (which include TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIG and TFIIH) operate through common promoter elements, such as the TATA box. Transcription factor IIB (TFIIB) is of central importance in transcription of class II genes. It associates with TFIID-TFIIA bound to DNA (the DA complex) to form a ternary TFIID-IIA-IBB (DAB) complex, which is recognised by RNA polymerase II [, ]. TFIIB comprises ~315-340 residues and contains an imperfect C-terminal repeat of a 75-residue domain that may contribute to the symmetry of the folded protein. The basal archaeal transcription machinery resembles that of the eukaryotic polymerase II system and includes a homologue of TFIIB []. This entry represents a cyclin-like domain which is found repeated in the C-terminal region of a variety of eukaryotic TFIIB's and their archaeal counterparts. These domains individually form the typical cyclin fold, and in the transcription complex they straddle the C-terminal region of the TATA-binding protein - an interaction essential for the formation of the transcription initiation complex [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2PHG_A 1C9B_Q 1TFB_A 1VOL_A 3K7A_M 1AIS_B 1D3U_B.
Probab=97.80 E-value=6.2e-05 Score=56.13 Aligned_cols=69 Identities=25% Similarity=0.309 Sum_probs=52.4
Q ss_pred HHHHHHHhCCCccHHHHHHH-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCCCCCCCcchhhhhhcchhh
Q psy2416 174 IVTYLQVLGCEKNQKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLFHVLESD 245 (405)
Q Consensus 174 l~~~l~~l~~~~~~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~~~~~~~~~ 245 (405)
|.+|+..|++. ..+...| .++.......+.-+..|..||+||||+|+...+.+.+. .+.-+.++++..+
T Consensus 1 I~r~~~~L~L~--~~v~~~A~~i~~~~~~~~~~~Gr~~~~iaAA~iY~acr~~~~~~t~-~eIa~~~~Vs~~t 70 (71)
T PF00382_consen 1 IPRICSKLGLP--EDVRERAKEIYKKAQERGLLKGRSPESIAAACIYLACRLNGVPRTL-KEIAEAAGVSEKT 70 (71)
T ss_dssp HHHHHHHTT----HHHHHHHHHHHHHHHHTTTSTTS-HHHHHHHHHHHHHHHTTSSSSH-HHHHHHCTSSHHH
T ss_pred ChHHHhHcCCC--HHHHHHHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHcCCCcCH-HHHHHHhCCCCCc
Confidence 46789999997 5899999 89888888888888999999999999999999986542 2344555665544
No 29
>KOG4368|consensus
Probab=97.43 E-value=0.00037 Score=69.90 Aligned_cols=8 Identities=25% Similarity=0.277 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q psy2416 150 VIKAERRV 157 (405)
Q Consensus 150 i~~~E~~i 157 (405)
|-+||.+|
T Consensus 281 ~~~~e~~~ 288 (757)
T KOG4368|consen 281 MPQMEAEV 288 (757)
T ss_pred hHHHHHhh
Confidence 34444443
No 30
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=96.54 E-value=0.0086 Score=56.85 Aligned_cols=68 Identities=15% Similarity=0.073 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccchhhHHHHHHHHHHhhcCCCcCHHHHHHHH
Q psy2416 55 GCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVF 122 (405)
Q Consensus 55 ~v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~LA~K~ee~~~~l~~i~~~~ 122 (405)
-.++|-.+|..|+|+.++...|..+++............+.-+|+|||||||.+.+..+.-.++..+.
T Consensus 194 p~~yi~rf~s~L~l~~~v~~~a~ei~~~~~~~g~~~Gk~P~glAaaaiy~as~l~~~~~tq~eva~v~ 261 (285)
T COG1405 194 PSDYIPRFASKLGLSDEVRRKAIEIVKKAKRAGLTAGKSPAGLAAAAIYLASLLLGERRTQKEVAKVA 261 (285)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 35788999999999999999999999999998888899999999999999999999887777777654
No 31
>KOG2548|consensus
Probab=96.09 E-value=0.003 Score=62.84 Aligned_cols=13 Identities=23% Similarity=0.383 Sum_probs=6.1
Q ss_pred HHHHHHHHHhcCC
Q psy2416 56 CELIQTAGILLKL 68 (405)
Q Consensus 56 v~~I~~v~~~L~L 68 (405)
++||+-.|..+++
T Consensus 38 ~QflQ~hGrr~kv 50 (653)
T KOG2548|consen 38 IQFLQAHGRRYKV 50 (653)
T ss_pred HHHHHHhchhhee
Confidence 4445555544443
No 32
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. Cyclins contain two domains of similar all-alpha fold, of which this entry is associated with the N-terminal domain.; PDB: 2W2H_B 3RGF_B 1KXU_A 1JKW_A 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D ....
Probab=96.02 E-value=0.04 Score=45.43 Aligned_cols=86 Identities=20% Similarity=0.234 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhCCCccHHHHHHH-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCCCCCCCcchhhhh--hcchhhHH
Q psy2416 171 HKIIVTYLQVLGCEKNQKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLF--HVLESDIQ 247 (405)
Q Consensus 171 ~~~l~~~l~~l~~~~~~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~~~--~~~~~~l~ 247 (405)
.+|+......+++. ......| .+++..+....+....+..||+||+++|+++.....+....|.... .++.++|.
T Consensus 35 ~~~i~~~~~~~~l~--~~~~~~A~~~~dr~~~~~~~~~~~~~li~~~cl~lA~K~~e~~~~~~~~~~~~~~~~~~~~~i~ 112 (127)
T PF00134_consen 35 IDWIIELCQRLKLS--PETLHLAIYLFDRFLSKRPVNRSKLQLIALACLFLASKMEEDNPPSISDLIRISDNTFTKKDIL 112 (127)
T ss_dssp HHHHHHHHHHTT-B--HHHHHHHHHHHHHHHTTS-TTCCGHHHHHHHHHHHHHHHHTSS--HHHHHHHHTTTSSHHHHHH
T ss_pred HHHHHHHHHhcccc--hhHHHHHHHHHHHHHhhcccccchhhhhhhhHHHHhhhhhccccchHHHHHHHHcCCCCHHHHH
Confidence 45566666777775 6677888 8887776666678889999999999999999887554433444333 36788888
Q ss_pred HHHHHHHHHhc
Q psy2416 248 DVCKRILRLYT 258 (405)
Q Consensus 248 ~~~~~il~ly~ 258 (405)
+.-..|+....
T Consensus 113 ~~E~~iL~~L~ 123 (127)
T PF00134_consen 113 EMEREILSALN 123 (127)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHCC
Confidence 88888877654
No 33
>KOG1597|consensus
Probab=95.72 E-value=0.042 Score=51.44 Aligned_cols=68 Identities=10% Similarity=0.101 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccchhhHHHHHHHHHHhhcCCCcCHHHHHHHH
Q psy2416 55 GCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVF 122 (405)
Q Consensus 55 ~v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~LA~K~ee~~~~l~~i~~~~ 122 (405)
.-+||...|..|+||..+...|..+-...-.........+.-|++|+||+++-+.+.++...+|..+.
T Consensus 203 t~~~m~RFCs~L~L~~~~q~aA~e~a~ka~~~~~~~gRsPiSIAAa~IYmisqls~~kkt~keI~~vt 270 (308)
T KOG1597|consen 203 TGDFMPRFCSNLGLPKSAQEAATEIAEKAEEMDIRAGRSPISIAAAAIYMISQLSDEKKTQKEIGEVT 270 (308)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhccCcccHHHHHHHh
Confidence 56899999999999999999999999998887777778999999999999999999888888887765
No 34
>KOG2548|consensus
Probab=95.52 E-value=0.0066 Score=60.50 Aligned_cols=13 Identities=8% Similarity=-0.243 Sum_probs=7.1
Q ss_pred HHHHHHHHHhccc
Q psy2416 74 ATGQVLFQRFYYS 86 (405)
Q Consensus 74 ~~A~~~~~Rf~~~ 86 (405)
++-.+|+|.||..
T Consensus 131 ~L~qiy~~e~~ga 143 (653)
T KOG2548|consen 131 YLKQIYDHERRGA 143 (653)
T ss_pred HHHHHHHHHHhcc
Confidence 4445566666654
No 35
>PF01857 RB_B: Retinoblastoma-associated protein B domain; InterPro: IPR002719 Retinoblastoma-like and retinoblastoma-associated proteins may have a function in cell cycle regulation. They form a complex with adenovirus E1A and SV40 large T antigen, and may bind and modulate the function of certain cellular proteins with which T and E1A compete for pocket binding. The proteins may act as tumor suppressors, and are potent inhibitors of E2F-mediated trans-activation. This domain has the cyclin fold []. The crystal structure of the Rb pocket bound to a nine-residue E7 peptide containing the LxCxE motif, shared by other Rb-binding viral and cellular proteins, shows that the LxCxE peptide binds a highly conserved groove on the B-box portion of the pocket; the A-box portion (see IPR002720 from INTERPRO) appears to be required for the stable folding of the B box. Also highly conserved is the extensive A-B interface, suggesting that it may be an additional protein-binding site. The A and B boxes each contain the cyclin-fold structural motif, with the LxCxE-binding site on the B-box cyclin fold being similar to a Cdk2-binding site of cyclin A and to a TBP-binding site of TFIIB []. The A and B boxes are found at the C-terminal end of the protein; the B-box is on C-terminal side of the A-box.; GO: 0051726 regulation of cell cycle, 0005634 nucleus; PDB: 1GUX_B 3POM_A 1GH6_B 1N4M_A 1O9K_H 4ELL_B 2R7G_C 4ELJ_A.
Probab=95.48 E-value=0.079 Score=44.61 Aligned_cols=68 Identities=10% Similarity=0.104 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhccc--CCccccchhhHHHHHHHHHHhhcCCCcCHHHHHHHH
Q psy2416 55 GCELIQTAGILLKLPQVAMATGQVLFQRFYYS--KSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVF 122 (405)
Q Consensus 55 ~v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~--~s~~~~~~~lva~acl~LA~K~ee~~~~l~~i~~~~ 122 (405)
+..-|.++|..|+|+..+....++.|+-.+.. .-+.+.++.-+.+.|+|+-||+.....+..+|+..+
T Consensus 14 a~~Rl~~LC~~L~l~~~~~~~iwt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~sF~~Ii~~Y 83 (135)
T PF01857_consen 14 AAVRLQDLCERLDLSSDLREKIWTCFEHSLTHHTELMKDRHLDQIILCAIYGICKVSKEELSFKDIIKAY 83 (135)
T ss_dssp HHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHSGGGGTTS-HHHHHHHHHHHHHHHTT-S--HHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 45568899999999999888889999887753 356777888999999999999999888999999876
No 36
>KOG0151|consensus
Probab=95.33 E-value=0.039 Score=57.13 Aligned_cols=24 Identities=4% Similarity=-0.047 Sum_probs=12.5
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhcc
Q psy2416 62 AGILLKLPQVAMATGQVLFQRFYY 85 (405)
Q Consensus 62 v~~~L~L~~~t~~~A~~~~~Rf~~ 85 (405)
|+..+.+..+-...|..|.+=|+.
T Consensus 450 Ig~aM~FalenA~aa~EI~eci~e 473 (877)
T KOG0151|consen 450 IGDAMVFALENADAAGEIVECITE 473 (877)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHH
Confidence 444555555555555555555543
No 37
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This is the C-terminal domain of cyclins.; GO: 0005634 nucleus; PDB: 3QHR_D 3QHW_B 1W98_B 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D 2IW9_D ....
Probab=94.23 E-value=0.18 Score=40.67 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccchhhHHHHHHHHHHhhcCC
Q psy2416 56 CELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEA 111 (405)
Q Consensus 56 v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~LA~K~ee~ 111 (405)
.+||..+....+....+...|..+++-.+....+..+.+-+||+|||++|.++.+.
T Consensus 4 ~~Fl~~~~~~~~~~~~~~~~a~~l~el~l~~~~fl~~~PS~iAaAai~lA~~~~~~ 59 (118)
T PF02984_consen 4 YDFLRRFLKISNADQEVRNLARYLLELSLLDYEFLQYPPSVIAAAAILLARKILGK 59 (118)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHHHHHSHHHTTS-HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhCc
Confidence 56777776655667789999999999888888899999999999999999998654
No 38
>KOG0151|consensus
Probab=93.69 E-value=0.14 Score=53.35 Aligned_cols=13 Identities=8% Similarity=0.289 Sum_probs=7.1
Q ss_pred CChHHHHHHHHHH
Q psy2416 168 KHPHKIIVTYLQV 180 (405)
Q Consensus 168 ~~P~~~l~~~l~~ 180 (405)
.-|.+||.++...
T Consensus 556 ifpe~~l~~l~~~ 568 (877)
T KOG0151|consen 556 IFPEDFLIGLQNT 568 (877)
T ss_pred hCcHHHHHHHHHH
Confidence 3466666655444
No 39
>TIGR00569 ccl1 cyclin ccl1. University).
Probab=93.39 E-value=0.3 Score=47.02 Aligned_cols=84 Identities=8% Similarity=0.223 Sum_probs=56.2
Q ss_pred HHHHHHHHhC--CCccHHHHHHH-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCCCCCCCcchhhhhh----cchhh
Q psy2416 173 IIVTYLQVLG--CEKNQKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLFH----VLESD 245 (405)
Q Consensus 173 ~l~~~l~~l~--~~~~~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~~~~----~~~~~ 245 (405)
+|..++..++ +. +.+..+| .++...+...-...|+|..||++|||+|++.-+.++.-. .....+. ...++
T Consensus 62 ~i~~~~~~lkp~Lp--q~viaTAivyf~RFy~~~Sv~~~~p~~Ia~tclfLA~KvEE~~~si~-~fv~~~~~~~~~~~~~ 138 (305)
T TIGR00569 62 RLLDFCSAFKPTMP--TSVVGTAIMYFKRFYLNNSVMEYHPKIIMLTCVFLACKVEEFNVSID-QFVGNLKETPLKALEQ 138 (305)
T ss_pred HHHHHHHHhcCCCC--chHHHHHHHHHhHHhccCchhhcCHHHHHHHHHHHHHhccccCcCHH-HHHhhccCCchhhHHH
Confidence 4455566666 54 6788888 888888888778899999999999999999887654210 1111111 12356
Q ss_pred HHHHHHHHHHHhcC
Q psy2416 246 IQDVCKRILRLYTR 259 (405)
Q Consensus 246 l~~~~~~il~ly~~ 259 (405)
|.++-..|++....
T Consensus 139 Il~~E~~lL~~L~F 152 (305)
T TIGR00569 139 VLEYELLLIQQLNF 152 (305)
T ss_pred HHHHHHHHHHHCCC
Confidence 66666666665444
No 40
>KOG1674|consensus
Probab=93.37 E-value=0.39 Score=43.93 Aligned_cols=92 Identities=13% Similarity=0.098 Sum_probs=63.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcccCC---------ccccc-hhhHHHHHHHHHHhhcCCCcCHHHHHHHHHHHH
Q psy2416 57 ELIQTAGILLKLPQVAMATGQVLFQRFYYSKS---------FVRHP-METTAMGCVCLASKIEEAPRRIRDVINVFHHIR 126 (405)
Q Consensus 57 ~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s---------~~~~~-~~lva~acl~LA~K~ee~~~~l~~i~~~~~~~~ 126 (405)
+++.++-+..+..+.++-.|.+||+||..... +.-.+ .+=..++|+-+|||+.+..- .-+.++..
T Consensus 80 ~yleri~k~~~~s~~~lv~al~Yldr~~~~~~~~~~~~~~~i~s~n~vhR~lit~v~vs~kf~~d~~----y~n~~~a~- 154 (218)
T KOG1674|consen 80 QYLERIFKYSKCSPECLVLALVYLDRFVKQPQARSVKPQSLINSLNKVHRLLITTVTVSTKFLDDVY----YSNAYYAK- 154 (218)
T ss_pred HHHHHHHHHhcCCchhhhhhhhhhhhhhhhhcccccCcccccccchhHHHHHHHHHHHHHhhccchh----hhHHHHHH-
Confidence 46677778888999999999999999988511 12233 44478899999999986421 11111111
Q ss_pred HhhccCCCCcccchhHhhHHHHHHHHHHHHHHHHcCcceeeC
Q psy2416 127 QVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVK 168 (405)
Q Consensus 127 ~~~~~~~~~~~~~d~~~~~~~~~i~~~E~~iL~~L~F~l~~~ 168 (405)
. .+ -..+++-.+|..+|..++|.+.+.
T Consensus 155 v--gg-------------l~~~eln~lE~~~l~~~~~~l~i~ 181 (218)
T KOG1674|consen 155 V--GG-------------LTTDELNKLELDLLFLLDFRLIIS 181 (218)
T ss_pred h--CC-------------CChHhhhhhhHHHHhhCCeEEEec
Confidence 0 00 013567799999999999999986
No 41
>KOG0834|consensus
Probab=92.99 E-value=0.06 Score=51.94 Aligned_cols=54 Identities=13% Similarity=0.089 Sum_probs=44.5
Q ss_pred HHHHHHhcCCCH----HHHHHHHHHHHHhcccCCccccchhhHHHHHHHHHHhhcCCC
Q psy2416 59 IQTAGILLKLPQ----VAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAP 112 (405)
Q Consensus 59 I~~v~~~L~L~~----~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~LA~K~ee~~ 112 (405)
+.+++..|+-.. .+..+|+++++..+...-.-.|.++.||+|||+||+|+.+..
T Consensus 155 ll~~~k~l~~~~~~~~~~a~~Aw~~~nD~~~t~~cL~y~p~~IAva~i~lA~~~~~~~ 212 (323)
T KOG0834|consen 155 LLKYLKKLKADENLKQPLAQAAWNFVNDSLRTTLCLQYSPHSIAVACIHLAAKLLGVE 212 (323)
T ss_pred HHHHHHHhhhhhhccccHHHHHHHHhchhheeeeeEeecCcEEEeehhhHHHHHcCCC
Confidence 555566665544 488899999999998887789999999999999999998774
No 42
>KOG1598|consensus
Probab=92.81 E-value=0.14 Score=51.84 Aligned_cols=56 Identities=18% Similarity=0.125 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHhcccCCccccchhhHHHHHHHHHHhhcCCCcCHHHHHHHHHHH
Q psy2416 70 QVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHI 125 (405)
Q Consensus 70 ~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~LA~K~ee~~~~l~~i~~~~~~~ 125 (405)
..|+.+|..+++|--.---.....+--++.|||++||.+.+..+++.||+++.+.+
T Consensus 184 ~~Vv~~a~~L~~rMkrdwm~tGRRPsglcGAaLliAar~h~~~rsi~dIv~vvhV~ 239 (521)
T KOG1598|consen 184 EDVAKTATRLAQRMKRDWMQTGRRPSGLCGAALLIAARMHGFRRTIGDIAKVVHVC 239 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccchhHHHHHHHHHHcCccccHHHHHHHHHHh
Confidence 34778888887765432223455677788899999999999999999999998765
No 43
>KOG1847|consensus
Probab=92.59 E-value=0.17 Score=51.97 Aligned_cols=13 Identities=38% Similarity=0.419 Sum_probs=6.5
Q ss_pred HHHHHHHHHHhcC
Q psy2416 55 GCELIQTAGILLK 67 (405)
Q Consensus 55 ~v~~I~~v~~~L~ 67 (405)
.+++|.+.+..++
T Consensus 375 i~~~i~~a~ke~e 387 (878)
T KOG1847|consen 375 IVDFIQKAGKELE 387 (878)
T ss_pred chhhhhhcCCCcc
Confidence 4455555555444
No 44
>KOG4557|consensus
Probab=92.52 E-value=6.8 Score=35.26 Aligned_cols=174 Identities=17% Similarity=0.226 Sum_probs=102.0
Q ss_pred HHHHHHHhcCCC--HHHHHHHHHHHHHhcc--cCCccccchhhHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHhhccCC
Q psy2416 58 LIQTAGILLKLP--QVAMATGQVLFQRFYY--SKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKS 133 (405)
Q Consensus 58 ~I~~v~~~L~L~--~~t~~~A~~~~~Rf~~--~~s~~~~~~~lva~acl~LA~K~ee~~~~l~~i~~~~~~~~~~~~~~~ 133 (405)
+|-+++.+|+|. +.++..|..|..-.-. ..++-...-.--++-|+=||+=.-.++---...++...
T Consensus 2 lI~~l~~klgL~~ep~~lrKa~E~~RL~~~~~~~~~~~v~E~~kaV~CldlAa~~l~i~fDr~~avKLSG---------- 71 (262)
T KOG4557|consen 2 LISDLGRKLGLDNEPLLLRKAAEIRRLCDAQFDSSIIGVGEICKAVICLDLAATRLQIIFDRQAAVKLSG---------- 71 (262)
T ss_pred cHHHHHHhcCCccChHHHHHHHHHHHHHHhhccCccccccchhHHHHhHHHHHHHhcccccHHHHHHhcc----------
Confidence 577899999994 6777788887764433 23444445555677888888766555433333333210
Q ss_pred CCcccchhHhhHHHHHHHHHHHHHHHHcCcceeeCChHHHHHHHHHHhCCCccHHHHHHH-HHHHHh---c-C-Cccccc
Q psy2416 134 ITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLGCEKNQKLMQLA-NYMNDS---L-R-TDVFVR 207 (405)
Q Consensus 134 ~~~~~~d~~~~~~~~~i~~~E~~iL~~L~F~l~~~~P~~~l~~~l~~l~~~~~~~l~~~A-~~l~d~---~-~-t~~~l~ 207 (405)
.....|... +-..| ..||.+..+. +..++-.+|. -++...| .+|.-. + . ..+-..
T Consensus 72 ----l~k~~Y~~~---~~sfe----~llgln~~~~-----VrdlaVQfgc---~evi~~a~~vl~syk~~lpaT~~~~~D 132 (262)
T KOG4557|consen 72 ----LSKKAYSRS---FNSFE----NLLGLNIKLN-----VRDLAVQFGC---VEVIKSAQNVLSSYKERLPATRRANAD 132 (262)
T ss_pred ----ccHHHHHHH---HHHHH----HHhcchhhcC-----HHHHHHHHhH---HHHHHHHHHHHHHHHhcCchhhhcCCc
Confidence 011223221 11112 2223332221 1223333443 2456666 665421 1 1 245677
Q ss_pred CChHHHHHHHHHHHHHHcCCCCCCCcchhhhhhcchhhHHHHHHHHHHHhcCCC
Q psy2416 208 YDPETIASACIYLTARKLRIPLPRNPAWYSLFHVLESDIQDVCKRILRLYTRPK 261 (405)
Q Consensus 208 ~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~~~~~~~~~l~~~~~~il~ly~~~~ 261 (405)
++-.+.++||+|.|+..++..+... ...+..|+.+.+..-++.++-..|.+..
T Consensus 133 ~SrP~ft~aA~~~ack~lKlKVdK~-kli~~sg~~~s~F~~l~kqler~~~qv~ 185 (262)
T KOG4557|consen 133 FSRPVFTAAAFYLACKKLKLKVDKL-KLIEVSGTSESEFSCLSKQLERNYKQVS 185 (262)
T ss_pred ccchHHHHHHHHHHHHHHHHhhhHh-hcccccCCCHHHHHHHHHHHHHHHHHhc
Confidence 8889999999999999998766432 3556668888888888888888887643
No 45
>KOG1847|consensus
Probab=92.36 E-value=0.18 Score=51.88 Aligned_cols=9 Identities=11% Similarity=-0.282 Sum_probs=3.3
Q ss_pred HHHHHHHHh
Q psy2416 57 ELIQTAGIL 65 (405)
Q Consensus 57 ~~I~~v~~~ 65 (405)
+-|..+...
T Consensus 373 ~~i~~~i~~ 381 (878)
T KOG1847|consen 373 DKIVDFIQK 381 (878)
T ss_pred hhchhhhhh
Confidence 333333333
No 46
>KOG2146|consensus
Probab=90.76 E-value=5.9 Score=37.14 Aligned_cols=13 Identities=8% Similarity=0.186 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHhc
Q psy2416 246 IQDVCKRILRLYT 258 (405)
Q Consensus 246 l~~~~~~il~ly~ 258 (405)
..+.+.+|+.|+.
T Consensus 96 AreFmgeLW~Lli 108 (354)
T KOG2146|consen 96 AREFMGELWSLLI 108 (354)
T ss_pred HHHHHHHHHHHHH
Confidence 3345555554443
No 47
>KOG0132|consensus
Probab=90.29 E-value=0.61 Score=49.20 Aligned_cols=17 Identities=18% Similarity=0.327 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHcCc
Q psy2416 147 KTQVIKAERRVLKELGF 163 (405)
Q Consensus 147 ~~~i~~~E~~iL~~L~F 163 (405)
|.+|+.+=+.|....+-
T Consensus 124 K~e~IqpLlDm~~~s~~ 140 (894)
T KOG0132|consen 124 KSEIIQPLLDMADGSGL 140 (894)
T ss_pred hHHHHHHHHHHHhccCc
Confidence 55666665666555544
No 48
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry includes cyclin PHO80 and other cyclins that partner with the cyclin-dependent kinase (CDK) PHO85. The PHO80/PHO85 cyclin-cdk complex is used for a regulatory process other than cell-cycle control []. This entry also includes other PHO80-like cyclins that are involved in the cell-cycle control. They belong to the P/U family and interact preferentially with CDKA1 [].; GO: 0019901 protein kinase binding, 0000079 regulation of cyclin-dependent protein kinase activity; PDB: 2PK9_D 2PMI_D.
Probab=90.02 E-value=2 Score=36.78 Aligned_cols=88 Identities=13% Similarity=0.244 Sum_probs=59.5
Q ss_pred ChHHHHHHHHHHhCCCccHHHHHHH-HHHHHhcC----Ccc-cccCChHHHHHHHHHHHHHHcCCCCCCCcchhhhhhcc
Q psy2416 169 HPHKIIVTYLQVLGCEKNQKLMQLA-NYMNDSLR----TDV-FVRYDPETIASACIYLTARKLRIPLPRNPAWYSLFHVL 242 (405)
Q Consensus 169 ~P~~~l~~~l~~l~~~~~~~l~~~A-~~l~d~~~----t~~-~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~~~~~~ 242 (405)
.-.+|+.++++....+ ..+.-+| .++.-... ... .-.....-|-++||.+|.+++....-....|-...|++
T Consensus 53 ~i~~fl~ri~~~~~~s--~~~~i~aliYl~Rl~~~~~~~~~~~~~~~~~Rl~l~alilA~K~~~D~~~~n~~~a~v~gis 130 (149)
T PF08613_consen 53 SIRDFLSRILKYTQCS--PECLILALIYLDRLRQRSRKPNIPLNSSNIHRLFLTALILASKFLDDNTYSNKSWAKVGGIS 130 (149)
T ss_dssp -HHHHHHHHHHHTT----HHHHHHHHHHHHHHHH--H-TT---STTTHHHHHHHHHHHHHHHH-SS---HHHHHHHHTS-
T ss_pred cHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHhhcccccccHHHHHhhcCCC
Confidence 3467888888777775 5666677 66554333 222 23467889999999999999876554556799999999
Q ss_pred hhhHHHHHHHHHHHhc
Q psy2416 243 ESDIQDVCKRILRLYT 258 (405)
Q Consensus 243 ~~~l~~~~~~il~ly~ 258 (405)
..++..+-.+++.+..
T Consensus 131 ~~eln~lE~~fL~~l~ 146 (149)
T PF08613_consen 131 LKELNELEREFLKLLD 146 (149)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCC
Confidence 9999999998888754
No 49
>KOG1675|consensus
Probab=89.59 E-value=0.89 Score=43.01 Aligned_cols=83 Identities=17% Similarity=0.220 Sum_probs=51.8
Q ss_pred HHHHHHHHhccc--CCccccchhhHHHHHHHHHHhhcCCC-cCHHHHHHHHHHHHHhhccCCCCcccchhHhhHHHHHHH
Q psy2416 75 TGQVLFQRFYYS--KSFVRHPMETTAMGCVCLASKIEEAP-RRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVI 151 (405)
Q Consensus 75 ~A~~~~~Rf~~~--~s~~~~~~~lva~acl~LA~K~ee~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~ 151 (405)
...+|+.|.+.. ..+.-+++..+....+++|+|+-+.. ..--|.+..+ + ..+.+++-
T Consensus 213 itL~~~erl~~~~e~~~~p~~w~r~~~g~il~sskv~~dqs~wnvdycqIl---K-----------------d~tveDmN 272 (343)
T KOG1675|consen 213 ITLVYAERLLWLAERDPCPRNWSRAVLGEILLSSKVYDDQSVWNVDYCEIL---K-----------------DQSVDDMN 272 (343)
T ss_pred HHHHhhHhhhhHhhcCCCcchhhhhhhhhheehhhhhhhhhcccHHHHHHH---h-----------------hccHhhHH
Confidence 345666665432 33446677788888899999987642 1111222211 1 11367899
Q ss_pred HHHHHHHHHcCcceeeCChHHHHHHHH
Q psy2416 152 KAERRVLKELGFCVHVKHPHKIIVTYL 178 (405)
Q Consensus 152 ~~E~~iL~~L~F~l~~~~P~~~l~~~l 178 (405)
+||+.+|+.|+|+++++- ..|.-.|+
T Consensus 273 e~ERqfLelLqfNinvp~-svYAKyYf 298 (343)
T KOG1675|consen 273 ALERQFLELLQFNINVPS-SEYAKYYF 298 (343)
T ss_pred HHHHHHHHHHhhccCccH-HHHHHHHH
Confidence 999999999999999873 34544443
No 50
>KOG0656|consensus
Probab=88.88 E-value=4.1 Score=39.55 Aligned_cols=82 Identities=18% Similarity=0.289 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHcCcceee---CCh------HHHHHHHHHHhCCCccHHHHHHH-HHHHHhcCCcccccCC---hHHH
Q psy2416 147 KTQVIKAERRVLKELGFCVHV---KHP------HKIIVTYLQVLGCEKNQKLMQLA-NYMNDSLRTDVFVRYD---PETI 213 (405)
Q Consensus 147 ~~~i~~~E~~iL~~L~F~l~~---~~P------~~~l~~~l~~l~~~~~~~l~~~A-~~l~d~~~t~~~l~~~---Ps~I 213 (405)
-..++..|..-....++.+.+ .+| .++|...++..+.+ ..+.-+| ++++-.+...-+-... -..|
T Consensus 49 i~~ll~kEe~~~p~~~~~~~~~~~~~~~~R~~A~~WIl~V~~~~~~~--~~~~~LA~NYlDRFls~~~l~k~k~W~lQLl 126 (335)
T KOG0656|consen 49 LANLLEKEEQHNPSLDYFLCVQKLILSSMRKQALDWILKVCEEYNFE--PLVFLLAMNYLDRFLSSQKLPKDKPWMLQLL 126 (335)
T ss_pred HHHHHHHHHHhCCCCchhhhcccccccHHHHHHHHHHHHHHHHhCCc--hHHHHHHHHHHHHhhcccccCCCchHHHHHH
Confidence 446677777766666644433 233 46677777777776 6788899 9998877776677777 5789
Q ss_pred HHHHHHHHHHHcCCCCC
Q psy2416 214 ASACIYLTARKLRIPLP 230 (405)
Q Consensus 214 AaA~i~lA~~~~~~~l~ 230 (405)
|+||+.||+++-...+|
T Consensus 127 AvaCLsLAsKmeE~~vP 143 (335)
T KOG0656|consen 127 AVACLSLASKMEETDVP 143 (335)
T ss_pred HHHHHHHHHhhcCcCCc
Confidence 99999999999877554
No 51
>KOG0794|consensus
Probab=88.49 E-value=0.86 Score=41.40 Aligned_cols=73 Identities=19% Similarity=0.342 Sum_probs=54.1
Q ss_pred HHHHHHH-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCCCCC-------------C-CcchhhhhhcchhhHHHHHH
Q psy2416 187 QKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLP-------------R-NPAWYSLFHVLESDIQDVCK 251 (405)
Q Consensus 187 ~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~-------------~-~~~w~~~~~~~~~~l~~~~~ 251 (405)
+.+..+| -++...+.-.-.-.+.|..+|..|||+|++....++. . -.-|.+.+.++..+|.++--
T Consensus 59 Q~ViATAivY~rRfy~r~S~k~~~p~lla~TClyLAcKvEE~~i~~~r~l~~~a~~L~~~f~~~~e~~~~~~~~I~e~Ef 138 (264)
T KOG0794|consen 59 QRVIATAIVYFRRFYLRKSLKEIEPRLLAPTCLYLACKVEECPIVHIRLLVNEAKVLKTRFSYWPEKFPYERKDILEMEF 138 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHhhhcccchhhcCCCcCcchhhhh
Confidence 6677777 6666666555577899999999999999998877532 1 01477777888888888887
Q ss_pred HHHHHhcC
Q psy2416 252 RILRLYTR 259 (405)
Q Consensus 252 ~il~ly~~ 259 (405)
.+++....
T Consensus 139 ~llE~Ld~ 146 (264)
T KOG0794|consen 139 YLLEALDC 146 (264)
T ss_pred hHHhhhce
Confidence 77777554
No 52
>KOG2146|consensus
Probab=86.57 E-value=13 Score=35.01 Aligned_cols=14 Identities=21% Similarity=0.610 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHcCc
Q psy2416 150 VIKAERRVLKELGF 163 (405)
Q Consensus 150 i~~~E~~iL~~L~F 163 (405)
+-..|..||..|.|
T Consensus 14 FSdkeKKLmkqmKF 27 (354)
T KOG2146|consen 14 FSDKEKKLMKQMKF 27 (354)
T ss_pred cchHHHHHHHhccc
Confidence 34456666666666
No 53
>KOG0796|consensus
Probab=86.05 E-value=0.59 Score=44.51 Aligned_cols=11 Identities=27% Similarity=0.703 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q psy2416 246 IQDVCKRILRL 256 (405)
Q Consensus 246 l~~~~~~il~l 256 (405)
|.++|...|.+
T Consensus 188 VCeVCGa~L~~ 198 (319)
T KOG0796|consen 188 VCEVCGAFLSV 198 (319)
T ss_pred HHHhhhHHHhc
Confidence 33444444433
No 54
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=78.42 E-value=3.7 Score=38.98 Aligned_cols=86 Identities=13% Similarity=0.193 Sum_probs=59.5
Q ss_pred HHHHHHHHHhCCCccHHHHHHH-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCC--CCC-----CCcchhhhhhcch
Q psy2416 172 KIIVTYLQVLGCEKNQKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRI--PLP-----RNPAWYSLFHVLE 243 (405)
Q Consensus 172 ~~l~~~l~~l~~~~~~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~--~l~-----~~~~w~~~~~~~~ 243 (405)
.+|..++..|++. ..+..+| .++.-.+.-.-.-.+++..||.+|||+|++..+. .+- ....|.+...-++
T Consensus 50 k~i~~l~~~L~lp--~~~laTAi~~f~Rf~Lk~sv~e~~~~~vv~tcv~LA~K~ed~~~~I~i~~~~~~~~~se~~~~sr 127 (297)
T COG5333 50 KLIMDLCTRLNLP--QTVLATAILFFSRFYLKNSVEEISLYSVVTTCVYLACKVEDTPRDISIESFEARDLWSEEPKSSR 127 (297)
T ss_pred HHHHHHHHhcCCC--cchHHHHHHHHHHHHhhcccccccHHHHHHhheeeeeecccccchhhHHHHHhhccccccccccH
Confidence 4556667777765 5677888 7777666555577899999999999999998873 221 1124555556677
Q ss_pred hhHHHHHHHHHHHhcC
Q psy2416 244 SDIQDVCKRILRLYTR 259 (405)
Q Consensus 244 ~~l~~~~~~il~ly~~ 259 (405)
+.|-+.-.+|++....
T Consensus 128 ~~Il~~E~~lLEaL~f 143 (297)
T COG5333 128 ERILEYEFELLEALDF 143 (297)
T ss_pred HHHHHHHHHHHHHccc
Confidence 7777777777766443
No 55
>PF07420 DUF1509: Protein of unknown function (DUF1509); InterPro: IPR010883 This family consists of several uncharacterised viral proteins, which include LORF2 from the Marek's disease-like viruses (Meleagrid herpesvirus 1 (MeHV-1) and LORF3 from Gallid herpesvirus 2. Members of this family are typically around 400 residues in length. The function of this family is unknown.
Probab=77.13 E-value=2.7 Score=39.37 Aligned_cols=25 Identities=16% Similarity=0.018 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCHHH
Q psy2416 48 ETDLRIIGCELIQTAGILLKLPQVA 72 (405)
Q Consensus 48 e~~~R~~~v~~I~~v~~~L~L~~~t 72 (405)
-.++..++-.||..|....+....|
T Consensus 41 l~~~~Re~R~yi~~~sg~v~~~~at 65 (377)
T PF07420_consen 41 LEQLCREGREYIRMLSGTVMANHAT 65 (377)
T ss_pred HHHHHHHHHHHHHHhhcccccCccc
Confidence 3445556667777776666555444
No 56
>KOG2888|consensus
Probab=77.05 E-value=1.5 Score=41.73 Aligned_cols=7 Identities=43% Similarity=1.046 Sum_probs=3.9
Q ss_pred HHHHcCc
Q psy2416 157 VLKELGF 163 (405)
Q Consensus 157 iL~~L~F 163 (405)
-+.+|||
T Consensus 156 YIRalGF 162 (453)
T KOG2888|consen 156 YIRALGF 162 (453)
T ss_pred hhhhhee
Confidence 3455666
No 57
>KOG2496|consensus
Probab=76.20 E-value=5.9 Score=37.60 Aligned_cols=55 Identities=13% Similarity=0.369 Sum_probs=44.5
Q ss_pred HHHHHHHHhCCCccHHHHHHH-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCC
Q psy2416 173 IIVTYLQVLGCEKNQKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRI 227 (405)
Q Consensus 173 ~l~~~l~~l~~~~~~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~ 227 (405)
.+..|+..+.......+..+| .|..-.|+.+....|.|..|.++|+++|++.-..
T Consensus 62 ~l~~f~~k~~p~lp~~Vv~TA~~fFkRffL~nsvme~~pk~I~~tc~flA~Kieef 117 (325)
T KOG2496|consen 62 SLVNFYSKFKPNLPTSVVSTAIEFFKRFFLENSVMEYSPKIIMATCFFLACKIEEF 117 (325)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHhcchhhcChHHHHHHHHHHHhhhHhh
Confidence 355666666554446788999 8889999999999999999999999999997643
No 58
>PF09080 K-cyclin_vir_C: K cyclin, C terminal; InterPro: IPR015164 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This domain adopts a secondary structure consisting of a five alpha-helix cyclin fold. Interaction with cyclin dependent kinases (CDKs) at a PSTAIRE sequence motif within the catalytic cleft of CDK results in the regulation of CDK activity []. ; PDB: 1G3N_C.
Probab=61.14 E-value=73 Score=24.43 Aligned_cols=87 Identities=15% Similarity=0.182 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHhCCCcc--HHHHHHH-HHHHHhcCCcccccCChHHHHHH-HHHHHHHHcCCCCCC--C---cchhhhhh
Q psy2416 170 PHKIIVTYLQVLGCEKN--QKLMQLA-NYMNDSLRTDVFVRYDPETIASA-CIYLTARKLRIPLPR--N---PAWYSLFH 240 (405)
Q Consensus 170 P~~~l~~~l~~l~~~~~--~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA-~i~lA~~~~~~~l~~--~---~~w~~~~~ 240 (405)
|-+-+...+-++++... ..+.... ..+..++-++..-..+|+.||+| |-.+..-. -++.+. + +...+.+|
T Consensus 4 ~TD~~~~~L~K~~~~~e~L~~~H~~V~~~v~KAiV~P~TG~Lp~SlvaAA~CAL~~~~~-~~P~~~~~~~~~~~LA~~~G 82 (106)
T PF09080_consen 4 PTDAIGPLLFKSGFTKEQLFAWHSEVVESVHKAIVNPKTGGLPPSLVAAAGCALFSLGA-AAPPDTHSGGVVPQLAEALG 82 (106)
T ss_dssp CHHHHHHHHHHHS-SSTTHHHHHHHHHHHHHHHHCSTTGGGS-HHHHHHHHHHHHS-GG-GS--------HHHHHHHHHT
T ss_pred ccccccHHHHHHcccHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHhhhhhccccc-cCCCccccccchHHHHHHhC
Confidence 33444444434444321 1334444 66677777888889999999998 54433221 111111 1 25677889
Q ss_pred cchhhHHHHHHHHHHHh
Q psy2416 241 VLESDIQDVCKRILRLY 257 (405)
Q Consensus 241 ~~~~~l~~~~~~il~ly 257 (405)
++...+...++.|+-..
T Consensus 83 ~~~a~L~AA~E~v~Tt~ 99 (106)
T PF09080_consen 83 VSAATLQAAAESVATTL 99 (106)
T ss_dssp --HHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 99999988888776543
No 59
>KOG1010|consensus
Probab=60.86 E-value=20 Score=38.86 Aligned_cols=68 Identities=7% Similarity=0.104 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcccC--CccccchhhHHHHHHHHHHhhcCCCcCHHHHHHHH
Q psy2416 55 GCELIQTAGILLKLPQVAMATGQVLFQRFYYSK--SFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVF 122 (405)
Q Consensus 55 ~v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~--s~~~~~~~lva~acl~LA~K~ee~~~~l~~i~~~~ 122 (405)
+.--|..+|++|.|.+++...-+.+|+--+... -+++.++.=+.+.|+|+-||+.+...+..+|+..|
T Consensus 680 AavRL~~Lc~rL~l~~e~r~~IWtlFehsl~~et~Lm~dRHLDQillCaiy~i~KV~~~~ltF~eIm~~Y 749 (920)
T KOG1010|consen 680 AAVRLNDLCERLSLSDELREQIWTLFEHSLTNETELMRDRHLDQILLCAIYGIAKVKKEDLTFSEIMRAY 749 (920)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccHHHHHhhhHHHHHHHHHHhheehhcccchHHHHHHHH
Confidence 334588999999999999999999998665532 34566777788999999999999999999999876
No 60
>KOG4246|consensus
Probab=53.07 E-value=6.4 Score=42.19 Aligned_cols=8 Identities=38% Similarity=0.534 Sum_probs=3.6
Q ss_pred HHHHHHHh
Q psy2416 76 GQVLFQRF 83 (405)
Q Consensus 76 A~~~~~Rf 83 (405)
+..++++-
T Consensus 76 s~~~l~~q 83 (1194)
T KOG4246|consen 76 SSVLLNRQ 83 (1194)
T ss_pred HHHHhhcc
Confidence 44444443
No 61
>COG5024 Cyclin [Cell division and chromosome partitioning]
Probab=51.73 E-value=23 Score=35.92 Aligned_cols=74 Identities=12% Similarity=0.140 Sum_probs=56.0
Q ss_pred HHHHHHH-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCCCCCCCcchhhhh--hcchhhHHHHHHHHHHHhcCC
Q psy2416 187 QKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLF--HVLESDIQDVCKRILRLYTRP 260 (405)
Q Consensus 187 ~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~~~--~~~~~~l~~~~~~il~ly~~~ 260 (405)
++-.-+| .|++-.+-...+..-.-..++++|+++|+++..+..|....+.-.+ .++.++|...-..|++.....
T Consensus 231 peTL~lainiiDrfLs~~~v~l~k~QLvg~s~LfIa~K~EE~~~p~i~~l~~~t~g~~t~~~i~~aE~~ml~~l~f~ 307 (440)
T COG5024 231 PETLFLAINIIDRFLSSRVVSLEKYQLVGISALFIASKYEEVNCPSIKDLVYATDGAFTRDDIIRAERYMLEVLDFN 307 (440)
T ss_pred chHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHhHhHhcCHHHHHHHHHHcccccHHHHHHHHHHHhhhcccc
Confidence 4556777 8887777667776677789999999999999988776533333333 488999999999998887664
No 62
>PF09241 Herp-Cyclin: Herpesviridae viral cyclin; InterPro: IPR015322 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry represents a domain found in a family of viral cyclins that specifically activate CDK6 of host cells to a very high degree []. This domain adopts a helical structure consisting of five alpha-helices, with one helix surrounded by the others.; PDB: 1XO2_A 1JOW_A 2F2C_A 2EUF_A 1BU2_A.
Probab=51.20 E-value=1.1e+02 Score=23.25 Aligned_cols=87 Identities=10% Similarity=0.182 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHhCCCcc--HHHHHHH-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCCCCCCCcchhhhh-------
Q psy2416 170 PHKIIVTYLQVLGCEKN--QKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLF------- 239 (405)
Q Consensus 170 P~~~l~~~l~~l~~~~~--~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~~~------- 239 (405)
.-+||...+..+++.+. +++...+ ..+-.++..+..-..+|-.|.++-+......-+-+. .+|...+
T Consensus 4 ~tdflip~c~alkipe~~wpql~e~~s~tickaliqpniall~p~licaggllttiet~ntn~---~~wt~yledl~~il 80 (106)
T PF09241_consen 4 STDFLIPVCHALKIPEDFWPQLFEATSITICKALIQPNIALLPPCLICAGGLLTTIETDNTNC---QPWTCYLEDLSCIL 80 (106)
T ss_dssp GGGGHHHHHHHTT--GGGHHHHHHHHHHHHHHHTTSGGGGGS-HHHHHHHHHHHHHHTS-TSS---STCHHHHHHHHHHH
T ss_pred hhhhHHHhhhhccCcHHHhHHHHHHHHHHHHHHHcCCCccccCcceeecccceEEEeccCCCC---cchhhhHHhhHHHh
Confidence 45688888988887542 5788888 666666777777778999999999888777655432 3564332
Q ss_pred hcchhhHHHHHHHHHHHhcC
Q psy2416 240 HVLESDIQDVCKRILRLYTR 259 (405)
Q Consensus 240 ~~~~~~l~~~~~~il~ly~~ 259 (405)
+++-..+..+-.++-+.+..
T Consensus 81 nfstntirt~kdqv~ea~~~ 100 (106)
T PF09241_consen 81 NFSTNTIRTVKDQVSEAFST 100 (106)
T ss_dssp TCHHHHHHHHHHHHHHHHHT
T ss_pred hcccchhhhHHHHHHHHHHh
Confidence 34455555555555554443
No 63
>PF11357 Spy1: Cell cycle regulatory protein; InterPro: IPR020984 Speedy (Spy1) is a cell cycle regulatory protein which activates CDK2, the major kinase that allows progression through G1/S phase and further replication events. Spy1 expression overcomes a p27-induced cell cycle arrest to allow for DNA synthesis, so cell cycle progression occurs due to an interaction between Spy1 and p27 []. Spy1 is also known as Ringo protein A.
Probab=48.43 E-value=1.2e+02 Score=25.33 Aligned_cols=83 Identities=14% Similarity=0.182 Sum_probs=49.7
Q ss_pred cCCCH-HHHHHHHHHHHHhcccC-CccccchhhHHHHHHHHHHhhcCCCcC-HHHHHHHHHHHHHhhccCCCCcccchhH
Q psy2416 66 LKLPQ-VAMATGQVLFQRFYYSK-SFVRHPMETTAMGCVCLASKIEEAPRR-IRDVINVFHHIRQVMNQKSITPMLLTTQ 142 (405)
Q Consensus 66 L~L~~-~t~~~A~~~~~Rf~~~~-s~~~~~~~lva~acl~LA~K~ee~~~~-l~~i~~~~~~~~~~~~~~~~~~~~~d~~ 142 (405)
+++.+ ..+++.++||.|--... .+...+ -..|||||+-+||.... -.+|.--++ +.+
T Consensus 25 ~~~sDKYLLAmV~~YF~Ragl~~~~Y~ri~----FFlALYLAndmEED~~~~K~~If~f~~----------------G~~ 84 (131)
T PF11357_consen 25 LRVSDKYLLAMVIAYFSRAGLFSWQYQRIH----FFLALYLANDMEEDDEEPKYEIFPFLY----------------GKN 84 (131)
T ss_pred hhhhhHHHHHHHHHHHHhcccchhhcchHH----HHHHHHHhhHHHhccchHHHHHHHHHH----------------Ccc
Confidence 44544 47788999999875422 122222 34689999999986432 334432221 111
Q ss_pred hhHHHHHHHHHHHHHHHHcCcceeeC
Q psy2416 143 YMTLKTQVIKAERRVLKELGFCVHVK 168 (405)
Q Consensus 143 ~~~~~~~i~~~E~~iL~~L~F~l~~~ 168 (405)
.........++=..+...+||..-|.
T Consensus 85 w~~~~~~F~klr~~~~~~m~~Ra~Vs 110 (131)
T PF11357_consen 85 WRSQIPQFHKLRDQFWRRMDWRAWVS 110 (131)
T ss_pred hHHHhHHHHHHHHHHHHHcCCceeeC
Confidence 11223466777778889999988764
No 64
>KOG3869|consensus
Probab=46.70 E-value=13 Score=36.82 Aligned_cols=13 Identities=31% Similarity=0.036 Sum_probs=5.3
Q ss_pred HHHHHHHcCccee
Q psy2416 154 ERRVLKELGFCVH 166 (405)
Q Consensus 154 E~~iL~~L~F~l~ 166 (405)
|+..|+.--|.+.
T Consensus 52 el~~l~e~~g~~~ 64 (450)
T KOG3869|consen 52 ELRRLQEAVGNSK 64 (450)
T ss_pred HHHHHHHHhcccc
Confidence 3344444444433
No 65
>KOG0653|consensus
Probab=44.44 E-value=57 Score=32.66 Aligned_cols=80 Identities=15% Similarity=0.155 Sum_probs=46.7
Q ss_pred HHHhCCCccHHHHHHH-HHHHHhcCCcccccCChHHHHHHHHH-HHHHHcCCCCCCCcchhhhh--hcchhhHHHHHHHH
Q psy2416 178 LQVLGCEKNQKLMQLA-NYMNDSLRTDVFVRYDPETIASACIY-LTARKLRIPLPRNPAWYSLF--HVLESDIQDVCKRI 253 (405)
Q Consensus 178 l~~l~~~~~~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~-lA~~~~~~~l~~~~~w~~~~--~~~~~~l~~~~~~i 253 (405)
-..+++. .+...+| ++++-.+....+-.-.-..++++|++ +|++...+.+|...+..-.. .++.++|......|
T Consensus 169 h~~F~L~--~ETL~LaVnliDRfL~~~~v~~~~lqLvgvsalf~IA~K~EE~~~P~v~dlv~isd~~~s~~~il~mE~~i 246 (391)
T KOG0653|consen 169 HEKFGLS--PETLYLAVNLIDRFLSKVKVPLKKLQLVGVSALLSIACKYEEISLPSVEDLVLITDGAYSREEILRMEKYI 246 (391)
T ss_pred hhhcCcC--HHHHHHHHHHHHHHHHHhcccHHHhhHHhHHHHHHHHHhhhhccCCccceeEeeeCCccchHHHHHHHHHH
Confidence 3344443 5677788 87744333322323344667778856 99998655555322221111 37888888888777
Q ss_pred HHHhcC
Q psy2416 254 LRLYTR 259 (405)
Q Consensus 254 l~ly~~ 259 (405)
++....
T Consensus 247 l~~L~f 252 (391)
T KOG0653|consen 247 LNVLEF 252 (391)
T ss_pred HhccCe
Confidence 766554
No 66
>KOG3263|consensus
Probab=43.48 E-value=5.5 Score=34.42 Aligned_cols=6 Identities=67% Similarity=0.800 Sum_probs=2.2
Q ss_pred CCCCCC
Q psy2416 360 SRSRTP 365 (405)
Q Consensus 360 ~r~~~~ 365 (405)
++++++
T Consensus 65 sRsR~r 70 (196)
T KOG3263|consen 65 SRSRSR 70 (196)
T ss_pred cccccc
Confidence 333333
No 67
>KOG0655|consensus
Probab=42.91 E-value=72 Score=30.94 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCC
Q psy2416 211 ETIASACIYLTARKLRIPLPR 231 (405)
Q Consensus 211 s~IAaA~i~lA~~~~~~~l~~ 231 (405)
..|-.+|+++|+++..+-.|.
T Consensus 189 QLIGitsLFIAAK~EEIYpPK 209 (408)
T KOG0655|consen 189 QLIGITSLFIAAKLEEIYPPK 209 (408)
T ss_pred HHhhHHHHHHHHHHhhccCcc
Confidence 457778899999988776553
No 68
>KOG4557|consensus
Probab=38.50 E-value=3.1e+02 Score=25.00 Aligned_cols=57 Identities=21% Similarity=0.244 Sum_probs=44.5
Q ss_pred HHHHHHHhCCCccHHHHHHH-HHH--HHhcCCcccccCChHHHHHHHHHHHHHHcCCCCC
Q psy2416 174 IVTYLQVLGCEKNQKLMQLA-NYM--NDSLRTDVFVRYDPETIASACIYLTARKLRIPLP 230 (405)
Q Consensus 174 l~~~l~~l~~~~~~~l~~~A-~~l--~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~ 230 (405)
|..+...+|+..++.+..-| .++ .+.-.+.+.++..-..=|+-|+-+|+.++++.++
T Consensus 3 I~~l~~klgL~~ep~~lrKa~E~~RL~~~~~~~~~~~v~E~~kaV~CldlAa~~l~i~fD 62 (262)
T KOG4557|consen 3 ISDLGRKLGLDNEPLLLRKAAEIRRLCDAQFDSSIIGVGEICKAVICLDLAATRLQIIFD 62 (262)
T ss_pred HHHHHHhcCCccChHHHHHHHHHHHHHHhhccCccccccchhHHHHhHHHHHHHhccccc
Confidence 55677788886667776666 554 5667788888888888899999999999998764
No 69
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=35.78 E-value=59 Score=24.69 Aligned_cols=28 Identities=18% Similarity=0.012 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q psy2416 57 ELIQTAGILLKLPQVAMATGQVLFQRFY 84 (405)
Q Consensus 57 ~~I~~v~~~L~L~~~t~~~A~~~~~Rf~ 84 (405)
..|..++..|+++...++.+..++++..
T Consensus 46 ~~~~rL~~Dl~in~~gi~lil~LLd~i~ 73 (84)
T PF13591_consen 46 RRIRRLHRDLGINLEGIALILDLLDRIE 73 (84)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 5677899999999999999999999864
No 70
>COG4047 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.62 E-value=2.2e+02 Score=25.84 Aligned_cols=45 Identities=13% Similarity=0.395 Sum_probs=33.3
Q ss_pred Ccchhhhhh--cchhhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHH
Q psy2416 232 NPAWYSLFH--VLESDIQDVCKRILRLYTRPKANTDELERQIEVIKK 276 (405)
Q Consensus 232 ~~~w~~~~~--~~~~~l~~~~~~il~ly~~~~~~~~~l~~~l~~~r~ 276 (405)
|.+||..|+ +...++.+++....++.....-+..-.+.++..++.
T Consensus 59 GEewW~eF~kyf~~~~vr~i~ray~~fLp~s~fnrrlieqKlrRi~r 105 (243)
T COG4047 59 GEEWWWEFAKYFRGREVRDIYRAYKEFLPNSRFNRRLIEQKLRRIRR 105 (243)
T ss_pred cHHHHHHHHHHHhhccHHHHHHHHHHhccCCchhHHHHHHHHHHHHH
Confidence 468998885 678889999999988888776555555566655554
No 71
>PRK13280 N-glycosylase/DNA lyase; Provisional
Probab=33.86 E-value=72 Score=30.13 Aligned_cols=46 Identities=24% Similarity=0.463 Sum_probs=34.2
Q ss_pred Ccchhhhhh--cchhhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHH
Q psy2416 232 NPAWYSLFH--VLESDIQDVCKRILRLYTRPKANTDELERQIEVIKKE 277 (405)
Q Consensus 232 ~~~w~~~~~--~~~~~l~~~~~~il~ly~~~~~~~~~l~~~l~~~r~~ 277 (405)
|+.||..|+ .+...+++++..+..++...+-+..-.+.+++.+++-
T Consensus 66 GEe~W~eFs~yf~~~~~~~~~~~~~~Fl~~s~~nrrl~e~KikRi~r~ 113 (269)
T PRK13280 66 GEEWWWEFSKYFSEKGVEDIVEAYIEFLKNSKGNRRLLEQKIKRIEKV 113 (269)
T ss_pred HHHHHHHHHHHhcccCchhHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 457998884 4677788899999999888776666666666666653
No 72
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=28.93 E-value=1.8e+02 Score=21.55 Aligned_cols=52 Identities=13% Similarity=0.211 Sum_probs=41.6
Q ss_pred ChHHHHHHHHHHHHHHcCCCCCCCcchhhhhhcchhhHHHHHHHHHHHhcCCC
Q psy2416 209 DPETIASACIYLTARKLRIPLPRNPAWYSLFHVLESDIQDVCKRILRLYTRPK 261 (405)
Q Consensus 209 ~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~~~~~~~~~l~~~~~~il~ly~~~~ 261 (405)
+|..|+.|++.+..++.|..-|.. .-...|....++|-.+..++|+.+....
T Consensus 16 T~~EvrdAAlQfVRKlSGtT~PS~-~n~~AFe~AV~~iaA~areLLDaLet~q 67 (88)
T COG5552 16 TPVEVRDAALQFVRKLSGTTHPSA-ANAEAFEAAVAEIAATARELLDALETRQ 67 (88)
T ss_pred CcHHHHHHHHHHHHHhcCCCCcch-hhHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 467899999999999999866653 3457777888899999999999887654
No 73
>PF01857 RB_B: Retinoblastoma-associated protein B domain; InterPro: IPR002719 Retinoblastoma-like and retinoblastoma-associated proteins may have a function in cell cycle regulation. They form a complex with adenovirus E1A and SV40 large T antigen, and may bind and modulate the function of certain cellular proteins with which T and E1A compete for pocket binding. The proteins may act as tumor suppressors, and are potent inhibitors of E2F-mediated trans-activation. This domain has the cyclin fold []. The crystal structure of the Rb pocket bound to a nine-residue E7 peptide containing the LxCxE motif, shared by other Rb-binding viral and cellular proteins, shows that the LxCxE peptide binds a highly conserved groove on the B-box portion of the pocket; the A-box portion (see IPR002720 from INTERPRO) appears to be required for the stable folding of the B box. Also highly conserved is the extensive A-B interface, suggesting that it may be an additional protein-binding site. The A and B boxes each contain the cyclin-fold structural motif, with the LxCxE-binding site on the B-box cyclin fold being similar to a Cdk2-binding site of cyclin A and to a TBP-binding site of TFIIB []. The A and B boxes are found at the C-terminal end of the protein; the B-box is on C-terminal side of the A-box.; GO: 0051726 regulation of cell cycle, 0005634 nucleus; PDB: 1GUX_B 3POM_A 1GH6_B 1N4M_A 1O9K_H 4ELL_B 2R7G_C 4ELJ_A.
Probab=27.54 E-value=2e+02 Score=24.10 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=36.0
Q ss_pred HHHHHHHHHhCCCccHHHHHHH-HHHHHhc--CCcccccCChHHHHHHHHHHHHHHcCCC
Q psy2416 172 KIIVTYLQVLGCEKNQKLMQLA-NYMNDSL--RTDVFVRYDPETIASACIYLTARKLRIP 228 (405)
Q Consensus 172 ~~l~~~l~~l~~~~~~~l~~~A-~~l~d~~--~t~~~l~~~Ps~IAaA~i~lA~~~~~~~ 228 (405)
.=|..+|..|++.. ++...+ .++.-++ .+.++..-.-.+|.++|||..+++.+.+
T Consensus 16 ~Rl~~LC~~L~l~~--~~~~~iwt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~ 73 (135)
T PF01857_consen 16 VRLQDLCERLDLSS--DLREKIWTCFEHSLTHHTELMKDRHLDQIILCAIYGICKVSKEE 73 (135)
T ss_dssp HHHHHHHHHHTTST--THHHHHHHHHHHHHHHSGGGGTTS-HHHHHHHHHHHHHHHTT-S
T ss_pred HHHHHHHHHcCCcH--HHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhhcCC
Confidence 34556777777652 343333 3333322 4788888999999999999999988753
No 74
>KOG0654|consensus
Probab=24.39 E-value=1.1e+02 Score=30.14 Aligned_cols=37 Identities=16% Similarity=0.054 Sum_probs=25.0
Q ss_pred HHHHHHHHHhcccCCccccchhhHHHHHHHHHHhhcC
Q psy2416 74 ATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEE 110 (405)
Q Consensus 74 ~~A~~~~~Rf~~~~s~~~~~~~lva~acl~LA~K~ee 110 (405)
.++.++..-.+.-..+.+|-+-++|++|+|||==.-+
T Consensus 257 ~~~~yl~elsll~~~~l~y~PSliAasAv~lA~~~~~ 293 (359)
T KOG0654|consen 257 PLANYLTELSLLDYIFLKYLPSLIAASAVFLARLTLD 293 (359)
T ss_pred HHHHHHHHhhhhhHHHhccChHHHHHHHHHHHHhhcc
Confidence 4444444444444557788899999999999855444
No 75
>PF03261 CDK5_activator: Cyclin-dependent kinase 5 activator protein; InterPro: IPR004944 These proteins are neuron specific activators of cyclin-dependent kinase 5 (CDK5) []. They form a heterodimer with the catalytic subunit (CDK5) [].; GO: 0016534 cyclin-dependent protein kinase 5 activator activity, 0016533 cyclin-dependent protein kinase 5 holoenzyme complex; PDB: 3O0G_D 1H4L_E 1UNH_D 1UNL_E 1UNG_E.
Probab=23.92 E-value=1.2e+02 Score=29.60 Aligned_cols=18 Identities=11% Similarity=0.368 Sum_probs=12.0
Q ss_pred cchhhHHHHHHHHHHhhc
Q psy2416 92 HPMETTAMGCVCLASKIE 109 (405)
Q Consensus 92 ~~~~lva~acl~LA~K~e 109 (405)
.+++.+.+||||||==|.
T Consensus 270 ~~l~~~~l~cly~sysy~ 287 (346)
T PF03261_consen 270 RELQAIVLTCLYLSYSYM 287 (346)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 456677777777776654
No 76
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=22.60 E-value=5.3e+02 Score=22.66 Aligned_cols=67 Identities=15% Similarity=0.085 Sum_probs=36.8
Q ss_pred cceeeCChHHHHHHHHHHhCCCcc-HHHHHHH-HHHHHhcCCccc----ccCChHHHHHHHHHHHHHHcCCCC
Q psy2416 163 FCVHVKHPHKIIVTYLQVLGCEKN-QKLMQLA-NYMNDSLRTDVF----VRYDPETIASACIYLTARKLRIPL 229 (405)
Q Consensus 163 F~l~~~~P~~~l~~~l~~l~~~~~-~~l~~~A-~~l~d~~~t~~~----l~~~Ps~IAaA~i~lA~~~~~~~l 229 (405)
|++....-..-|..|+..+.+... +.+..+- .|...-+...-- -.=....+|.|+|.|...+++..+
T Consensus 74 f~f~~~~i~~ALR~~l~~f~lpgE~Q~Idrile~Fs~~y~~~Np~~~~~~~d~v~~l~~sllmLnTdlHn~~~ 146 (185)
T cd00171 74 FDFSGLRLDEALRKFLQSFRLPGEAQKIDRLLEKFSERYCECNPGIFSSSADAAYTLAYSIIMLNTDLHNPNV 146 (185)
T ss_pred cCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHCCCCCCCChhHHHHHHHHHHHHhHHhcCccc
Confidence 444444455666777777765432 3333333 333332222111 122447888899999988887655
No 77
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=21.62 E-value=75 Score=22.30 Aligned_cols=20 Identities=20% Similarity=0.541 Sum_probs=17.7
Q ss_pred chhhhhhcchhhHHHHHHHH
Q psy2416 234 AWYSLFHVLESDIQDVCKRI 253 (405)
Q Consensus 234 ~w~~~~~~~~~~l~~~~~~i 253 (405)
-|...||++.++|.+++..+
T Consensus 25 ywa~~~gvt~~~L~~AV~~v 44 (57)
T PF12244_consen 25 YWAKRFGVTEEQLREAVRAV 44 (57)
T ss_pred HHHHHHCcCHHHHHHHHHHH
Confidence 58899999999999998765
No 78
>PF09171 DUF1886: Domain of unknown function (DUF1886); InterPro: IPR015254 This entry represents a set of known and suspected archaeal N-glycosylase/DNA lyases. These DNA repair enzymes are part of the base excision repair (BER) pathway; they protect from oxidative damage by removing the major product of DNA oxidation, 8-oxoguanine (GO), from single- and double-stranded DNA substrates [].Cleavage of the N-glycosidic bond between the aberrant base and the sugar-phosphate backbone generates an apurinic (AP) site. Subsequently, the phosphodiester bond 3' from the AP site is cleaved by an elimination reaction, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate. The protein contains two alpha-helical subdomains, with the 8-oxoguanine binding site located in a cleft at their interface. A helix-hairpin-helix (HhH) structural motif and a Gly/Pro-rich sequence followed by a conserved Asp (HhH-GPD motif) are present [].; GO: 0003906 DNA-(apurinic or apyrimidinic site) lyase activity, 0016799 hydrolase activity, hydrolyzing N-glycosyl compounds; PDB: 1XQP_A 1XQO_A 1XG7_A.
Probab=20.92 E-value=1.3e+02 Score=28.12 Aligned_cols=45 Identities=22% Similarity=0.483 Sum_probs=28.7
Q ss_pred Ccchhhhhh--cchhhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHH
Q psy2416 232 NPAWYSLFH--VLESDIQDVCKRILRLYTRPKANTDELERQIEVIKK 276 (405)
Q Consensus 232 ~~~w~~~~~--~~~~~l~~~~~~il~ly~~~~~~~~~l~~~l~~~r~ 276 (405)
|+.||..|+ +....+.+++.++.++....+-+..-.+.+++.+++
T Consensus 56 GEe~W~~Fs~yfs~~~~~~~~~~~~~FL~~s~~n~r~~~~KikRl~k 102 (246)
T PF09171_consen 56 GEEYWWEFSEYFSKRPIEDICEAFIEFLSNSKYNRRLLEQKIKRLRK 102 (246)
T ss_dssp HHHHHHHHHHHHCTS--SSHHHHHHHHCCC-TTS-TTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCchhHHHHHHHHHhhCcchHHHHHHHHHHHHH
Confidence 467999884 555577788888888777665555556666666665
No 79
>PHA02779 E6 protein; Provisional
Probab=20.77 E-value=12 Score=32.16 Aligned_cols=54 Identities=9% Similarity=0.070 Sum_probs=42.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcccC------------CccccchhhHHHHHHHHHHhhcCC
Q psy2416 58 LIQTAGILLKLPQVAMATGQVLFQRFYYSK------------SFVRHPMETTAMGCVCLASKIEEA 111 (405)
Q Consensus 58 ~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~------------s~~~~~~~lva~acl~LA~K~ee~ 111 (405)
-|.++|..|+++-..+.+..++-.+++... ..++.-++.+..+|+...+|+|..
T Consensus 12 tl~~Lc~~~~i~l~dl~L~CvFC~~~Lt~~E~~~F~~k~L~lVwR~g~pyg~C~~Cl~~~a~~e~~ 77 (150)
T PHA02779 12 TIDQLCKQCNLTMHTLQINCVFCKSILQTAEVYSFAYKELYVVWRGDFPFAACAKCLEFYGKVNQY 77 (150)
T ss_pred cHHHHHHHHCCCHHHhEeEeeecCCcCCHHHHHHHHhCCcEEEEECCEeeEEcHHHHHHHHHHHHH
Confidence 477899999999999988888877777431 124556888999999999999863
Done!