Query psy2416
Match_columns 405
No_of_seqs 297 out of 1989
Neff 8.4
Searched_HMMs 29240
Date Sat Aug 17 00:25:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2416.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2416hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ivx_A Cyclin-T2; transcriptio 100.0 2.7E-47 9.2E-52 357.7 28.2 233 24-261 3-242 (257)
2 2pk2_A Cyclin-T1, protein TAT; 100.0 4.6E-47 1.6E-51 370.5 19.4 241 17-262 3-250 (358)
3 2i53_A Cyclin K; cell cycle, t 100.0 9.1E-46 3.1E-50 347.6 25.2 230 23-264 12-256 (258)
4 3rgf_B Cyclin-C; protein kinas 100.0 1.1E-45 3.7E-50 351.2 18.8 231 21-261 11-244 (285)
5 1zp2_A RNA polymerase II holoe 100.0 6.5E-43 2.2E-47 323.5 16.2 217 21-262 5-223 (235)
6 1jkw_A Cyclin H; cell cycle, c 100.0 3E-40 1E-44 318.6 24.6 243 20-282 5-281 (323)
7 3g33_B CCND3 protein; Ser/Thr 100.0 1E-35 3.5E-40 284.9 16.3 217 26-261 44-269 (306)
8 2b9r_A Human cyclin B1; cell c 100.0 2.4E-35 8E-40 278.0 17.0 232 25-288 12-250 (269)
9 2cch_B Cyclin A2, cyclin-A; co 100.0 1.4E-35 4.6E-40 278.4 13.5 214 44-288 31-251 (260)
10 1g3n_C V-cyclin; cyclin-depend 100.0 9.1E-35 3.1E-39 272.3 17.2 201 43-262 42-251 (257)
11 2w96_A G1/S-specific cyclin-D1 100.0 1.6E-34 5.4E-39 272.8 15.8 218 25-261 29-259 (271)
12 2f2c_A Cyclin homolog, V-cycli 100.0 1.5E-33 5.2E-38 263.6 17.8 203 37-261 37-250 (254)
13 1c9b_A General transcription f 100.0 7E-32 2.4E-36 244.8 17.1 182 52-257 5-187 (207)
14 1f5q_B Gamma herpesvirus cycli 100.0 3.8E-32 1.3E-36 252.7 14.5 200 41-262 38-245 (252)
15 1w98_B Cyclin E, G1/S-specific 100.0 2.2E-31 7.6E-36 252.4 16.1 188 44-258 42-241 (283)
16 1ais_B TFB TFIIB, protein (tra 100.0 2E-27 6.8E-32 214.2 18.0 183 53-259 10-195 (200)
17 3k7a_M Transcription initiatio 99.9 5.3E-27 1.8E-31 228.1 7.4 223 8-258 71-321 (345)
18 4bbr_M Transcription initiatio 99.9 2.1E-22 7.1E-27 195.1 10.1 229 3-259 65-322 (345)
19 1ais_B TFB TFIIB, protein (tra 98.2 5.3E-06 1.8E-10 73.7 8.8 89 56-165 109-197 (200)
20 2pmi_B PHO85 cyclin PHO80, ami 97.9 5.9E-05 2E-09 70.0 10.3 104 56-181 78-185 (293)
21 1c9b_A General transcription f 97.7 8.8E-05 3E-09 66.1 7.8 67 56-122 103-169 (207)
22 3k7a_M Transcription initiatio 96.4 0.00054 1.8E-08 66.0 0.0 67 56-122 236-302 (345)
23 4bbr_M Transcription initiatio 96.1 0.016 5.5E-07 55.5 8.9 90 167-259 126-216 (345)
24 1zp2_A RNA polymerase II holoe 95.6 0.022 7.4E-07 51.5 7.0 56 56-111 135-190 (235)
25 3rgf_B Cyclin-C; protein kinas 95.3 0.062 2.1E-06 50.0 9.0 87 171-259 47-150 (285)
26 2b9r_A Human cyclin B1; cell c 95.0 0.11 3.7E-06 47.9 9.7 87 171-259 42-131 (269)
27 2i53_A Cyclin K; cell cycle, t 94.8 0.055 1.9E-06 49.4 7.2 57 56-112 152-212 (258)
28 1jkw_A Cyclin H; cell cycle, c 94.7 0.13 4.5E-06 48.7 9.5 85 172-259 62-156 (323)
29 2ivx_A Cyclin-T2; transcriptio 94.6 0.23 7.7E-06 45.3 10.7 86 171-259 35-139 (257)
30 1g3n_C V-cyclin; cyclin-depend 94.4 0.12 4.2E-06 47.1 8.5 87 171-259 55-144 (257)
31 2f2c_A Cyclin homolog, V-cycli 94.2 0.16 5.5E-06 46.2 8.7 86 172-259 57-145 (254)
32 2cch_B Cyclin A2, cyclin-A; co 94.1 0.093 3.2E-06 48.0 7.0 86 172-259 44-132 (260)
33 3g33_B CCND3 protein; Ser/Thr 94.0 0.14 4.8E-06 48.1 8.1 86 172-259 76-164 (306)
34 2pk2_A Cyclin-T1, protein TAT; 94.0 0.16 5.3E-06 48.9 8.6 56 171-228 42-98 (358)
35 2w96_A G1/S-specific cyclin-D1 93.9 0.22 7.5E-06 45.8 9.1 86 172-259 62-150 (271)
36 1w98_B Cyclin E, G1/S-specific 93.4 0.21 7.2E-06 46.3 8.1 86 172-259 55-144 (283)
37 3h4c_A Transcription factor TF 91.6 0.78 2.7E-05 39.7 8.4 66 55-120 15-83 (260)
38 1f5q_B Gamma herpesvirus cycli 91.1 0.46 1.6E-05 43.2 7.1 86 172-259 54-142 (252)
39 3m03_A ORC6, origin recognitio 91.1 1.3 4.5E-05 33.6 8.4 61 59-120 6-71 (95)
40 3m03_A ORC6, origin recognitio 89.4 1.4 4.8E-05 33.5 7.3 80 175-258 7-92 (95)
41 4ell_A Retinoblastoma-associat 87.1 1.8 6E-05 42.0 8.2 68 55-122 282-352 (411)
42 2r7g_A PP110, retinoblastoma-a 86.8 1.9 6.6E-05 40.9 8.2 68 55-122 218-288 (347)
43 2qdj_A Retinoblastoma-associat 85.6 2.1 7.2E-05 39.9 7.7 64 59-122 6-73 (304)
44 2pmi_B PHO85 cyclin PHO80, ami 85.6 3.7 0.00013 37.9 9.1 90 169-260 76-169 (293)
45 4elj_A Retinoblastoma-associat 81.9 4.6 0.00016 41.5 9.0 70 54-123 526-598 (656)
46 3pgw_S U1-70K; protein-RNA com 74.1 4.5 0.00015 39.7 6.1 17 203-219 146-162 (437)
47 4elj_A Retinoblastoma-associat 69.2 11 0.00036 38.9 7.6 64 58-122 7-75 (656)
48 3beg_B Splicing factor, argini 48.3 6.8 0.00023 30.3 1.5 9 241-249 28-36 (115)
49 3h4c_A Transcription factor TF 47.3 48 0.0016 28.7 6.7 23 208-230 55-77 (260)
50 2ys8_A RAB-related GTP-binding 36.2 1.2E+02 0.0042 22.0 6.9 54 233-286 27-84 (90)
51 1unl_D Cyclin-dependent kinase 35.6 48 0.0016 27.8 4.7 21 90-110 119-139 (208)
52 2wh0_Q Pkcev3, protein kinase 35.0 29 0.001 19.4 2.3 17 148-164 13-29 (31)
53 3o0g_D Cyclin-dependent kinase 33.4 81 0.0028 25.2 5.5 22 89-110 73-94 (149)
54 2r7g_A PP110, retinoblastoma-a 26.4 3.1E+02 0.011 25.7 9.3 84 144-229 165-279 (347)
55 2ljx_A Protein E6; metal bindi 22.3 1.9 6.6E-05 32.0 -5.4 54 58-111 13-78 (84)
No 1
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=2.7e-47 Score=357.75 Aligned_cols=233 Identities=25% Similarity=0.422 Sum_probs=212.9
Q ss_pred cccccChhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccchhhHHHHHHH
Q psy2416 24 SNCLLPEEKLNPTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVC 103 (405)
Q Consensus 24 ~~wlft~~~l~~tps~~~gi~~~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~ 103 (405)
++|+||.+||+++||+.+|++.+.|..+|..+++||.++|..|+|++.|+++|++||||||..+++.++++++||+||||
T Consensus 3 ~~w~~t~e~l~~~ps~~~g~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~ 82 (257)
T 2ivx_A 3 SRWFFTREQLENTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALF 82 (257)
T ss_dssp GGGSCCHHHHHSCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHH
T ss_pred CCeeecHHHHHhChHhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCcCHHHHHHHHHHHHHhhccCCCCcccchhHhhHHHHHHHHHHHHHHHHcCcceeeCChHHHHHHHHHHhCC
Q psy2416 104 LASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLGC 183 (405)
Q Consensus 104 LA~K~ee~~~~l~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~E~~iL~~L~F~l~~~~P~~~l~~~l~~l~~ 183 (405)
||||+||+++++.|++.+++.+.+... ......++.|...+++|+.||..||++|+|+|+++||+.||.+|++.++.
T Consensus 83 lA~K~EE~p~~l~d~~~~~~~~~~~~~---~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~ 159 (257)
T 2ivx_A 83 LAAKVEEQARKLEHVIKVAHACLHPLE---PLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRA 159 (257)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHCTTS---CCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTC
T ss_pred HHhccccCCcCHHHHHHHHHHHhccCC---CCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCC
Confidence 999999999999999999887754321 11123467888889999999999999999999999999999999999987
Q ss_pred CccHHHHHHH-HHHHHhc-CCcccccCChHHHHHHHHHHHHHHcCCCCCC---Ccchhhhh--hcchhhHHHHHHHHHHH
Q psy2416 184 EKNQKLMQLA-NYMNDSL-RTDVFVRYDPETIASACIYLTARKLRIPLPR---NPAWYSLF--HVLESDIQDVCKRILRL 256 (405)
Q Consensus 184 ~~~~~l~~~A-~~l~d~~-~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~---~~~w~~~~--~~~~~~l~~~~~~il~l 256 (405)
+ .++.+.| +++++++ .+++|+.|+|++||+||||+|+.++|.++|. +..||+.| +++.++|.+|+.+|+++
T Consensus 160 ~--~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l~~~~~~i~~~ 237 (257)
T 2ivx_A 160 S--KDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQI 237 (257)
T ss_dssp C--HHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHHHHHHHHHHHH
T ss_pred C--cHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 5 6799999 9999998 4889999999999999999999999988763 45799988 68999999999999999
Q ss_pred hcCCC
Q psy2416 257 YTRPK 261 (405)
Q Consensus 257 y~~~~ 261 (405)
|...+
T Consensus 238 ~~~~~ 242 (257)
T 2ivx_A 238 LEKTP 242 (257)
T ss_dssp HHTSH
T ss_pred HHhCh
Confidence 98765
No 2
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=100.00 E-value=4.6e-47 Score=370.49 Aligned_cols=241 Identities=26% Similarity=0.445 Sum_probs=215.2
Q ss_pred ccccccccccccChhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccchhh
Q psy2416 17 GKIALSLSNCLLPEEKLNPTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMET 96 (405)
Q Consensus 17 ~~~~~~~~~wlft~~~l~~tps~~~gi~~~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~l 96 (405)
|+...+.++||||.+||+++||+.+|++.+.|..+|.++++||.++|..|+|++.|+++|++||||||..+++.++++++
T Consensus 3 ~~~~~~~~~wlft~eeL~~~pS~~dgi~~~~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~ql 82 (358)
T 2pk2_A 3 GERKNNNKRWYFTREQLENSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNS 82 (358)
T ss_dssp -----CCSSSSCCSHHHHTCTTHHHHCCHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHH
T ss_pred CCcCCCCCCceeCHHHHHhChhhhcCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHH
Confidence 55666778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHhhccCCCCcccchhHhhHHHHHHHHHHHHHHHHcCcceeeCChHHHHHH
Q psy2416 97 TAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVT 176 (405)
Q Consensus 97 va~acl~LA~K~ee~~~~l~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~E~~iL~~L~F~l~~~~P~~~l~~ 176 (405)
|++||||||||+||+++++.||+.+++.+.+.. ...+.+.++.|...+++|+.||..||++|+|+|.++||+.||.+
T Consensus 83 va~acLfLA~K~EE~p~~l~d~v~v~~~~~~~~---~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~ 159 (358)
T 2pk2_A 83 VAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQ---ESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVK 159 (358)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHTTHHHHHCSS---SCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHH
T ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHhccc---cccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHH
Confidence 999999999999999999999999887765421 11222356778878999999999999999999999999999999
Q ss_pred HHHHhCCCccHHHHHHH-HHHHHhcC-CcccccCChHHHHHHHHHHHHHHcCCCCCC---Ccchhhhh--hcchhhHHHH
Q psy2416 177 YLQVLGCEKNQKLMQLA-NYMNDSLR-TDVFVRYDPETIASACIYLTARKLRIPLPR---NPAWYSLF--HVLESDIQDV 249 (405)
Q Consensus 177 ~l~~l~~~~~~~l~~~A-~~l~d~~~-t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~---~~~w~~~~--~~~~~~l~~~ 249 (405)
|++.++.. .++.++| +|+++++. +++|+.|+|++||+||||+|+.+++.++|. +..||+.| ++++++|.+|
T Consensus 160 ~~~~l~~~--~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~l~~i 237 (358)
T 2pk2_A 160 CTQLVRAS--KDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDEL 237 (358)
T ss_dssp HHHHTTCC--HHHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHHHHHH
T ss_pred HHHHcCCC--HHHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHHHHHHH
Confidence 99999875 6799999 99999984 889999999999999999999999988764 35799998 5899999999
Q ss_pred HHHHHHHhcCCCC
Q psy2416 250 CKRILRLYTRPKA 262 (405)
Q Consensus 250 ~~~il~ly~~~~~ 262 (405)
+.+|+++|...+.
T Consensus 238 ~~~il~~y~~~~~ 250 (358)
T 2pk2_A 238 THEFLQILEKTPN 250 (358)
T ss_dssp HHHHHHHTTTCTT
T ss_pred HHHHHHHHHhCcc
Confidence 9999999988774
No 3
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=9.1e-46 Score=347.60 Aligned_cols=230 Identities=34% Similarity=0.580 Sum_probs=208.6
Q ss_pred ccccccChhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccchhhHHHHHH
Q psy2416 23 LSNCLLPEEKLNPTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCV 102 (405)
Q Consensus 23 ~~~wlft~~~l~~tps~~~gi~~~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl 102 (405)
..+|+|+++||+.+||+.+|++++.|..+|..+++||.++|..|+|++.|+++|++||||||..+++.++++++||+|||
T Consensus 12 ~~~w~~~~~el~~~ps~~~~~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL 91 (258)
T 2i53_A 12 KPCWYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCL 91 (258)
T ss_dssp SSSCCCCGGGGGGCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHH
T ss_pred ccCCccCHHHHHhCchhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCcCHHHHHHHHHHHHHhhccCCCCcccchhHhh----HHHHHHHHHHHHHHHHcCcceeeCChHHHHHHHH
Q psy2416 103 CLASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLTTQYM----TLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYL 178 (405)
Q Consensus 103 ~LA~K~ee~~~~l~~i~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~i~~~E~~iL~~L~F~l~~~~P~~~l~~~l 178 (405)
|||||+||.+++++||+.++..+. .+..|. ..+++|+.||..||++|+|+|++++|+.||.+|+
T Consensus 92 ~lA~K~eE~~~~l~d~~~~~~~~~------------~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~ 159 (258)
T 2i53_A 92 FLAGKVEETPKKCKDIIKTARSLL------------NDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYA 159 (258)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHS------------CHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHH
T ss_pred HHHHccccccccHHHHHHHHHHHh------------chhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHH
Confidence 999999999999999998875432 122331 2478999999999999999999999999999999
Q ss_pred HHhCCCcc--HHHHHHH-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCCCCC------CCcchhhhh--hcchhhHH
Q psy2416 179 QVLGCEKN--QKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLP------RNPAWYSLF--HVLESDIQ 247 (405)
Q Consensus 179 ~~l~~~~~--~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~------~~~~w~~~~--~~~~~~l~ 247 (405)
+.++.+.+ +++.+.| +++++++.++.|+.|+|+.||+||||+|+.+++.+++ ....||..| |++.++|.
T Consensus 160 ~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~l~ 239 (258)
T 2i53_A 160 KQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLE 239 (258)
T ss_dssp HTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHHHHH
T ss_pred HHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccCCCHHHHH
Confidence 99987632 2689999 9999999999999999999999999999999998653 235799998 99999999
Q ss_pred HHHHHHHHHhcCCCCCh
Q psy2416 248 DVCKRILRLYTRPKANT 264 (405)
Q Consensus 248 ~~~~~il~ly~~~~~~~ 264 (405)
+|+.+|+++|...+.+.
T Consensus 240 ~~~~~il~ly~~~~~~~ 256 (258)
T 2i53_A 240 DICHQILDLYSQGKQQM 256 (258)
T ss_dssp HHHHHHHTTTSSSCCCC
T ss_pred HHHHHHHHHHhcccccC
Confidence 99999999999887654
No 4
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.1e-45 Score=351.23 Aligned_cols=231 Identities=28% Similarity=0.364 Sum_probs=207.8
Q ss_pred ccccccccChhhhcCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccchhhHHH
Q psy2416 21 LSLSNCLLPEEKLNPTPS-MLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAM 99 (405)
Q Consensus 21 ~~~~~wlft~~~l~~tps-~~~gi~~~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~ 99 (405)
.+.++|+||++||..+++ ..+|++.++|..+|..+++||.++|..|+|++.|+++|++||||||..+++.++++++|++
T Consensus 11 s~~~~Wlft~~el~~~~~~~~~~l~~~~e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~ 90 (285)
T 3rgf_B 11 SHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAP 90 (285)
T ss_dssp HHHHHHSCCHHHHHHHHTTGGGTSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHH
T ss_pred cccCCcCcCHHHHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHH
Confidence 356799999999987655 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCc-CHHHHHHHHHHHHHhhccCCCCcccchhHhhHHHHHHHHHHHHHHHHcCcceeeCChHHHHHHHH
Q psy2416 100 GCVCLASKIEEAPR-RIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYL 178 (405)
Q Consensus 100 acl~LA~K~ee~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~E~~iL~~L~F~l~~~~P~~~l~~~l 178 (405)
||||||||+||+++ .+.+|+.++..+.+... ....+++|...+++|+.||..||++|+|+|.++||+.||.+|+
T Consensus 91 acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~-----~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~ 165 (285)
T 3rgf_B 91 TCVFLASKVEEFGVVSNTRLIAAATSVLKTRF-----SYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYV 165 (285)
T ss_dssp HHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHC-----TTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHH
T ss_pred HHHHHHHhhhccccccHHHHHHHHHHHHcccc-----cccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHH
Confidence 99999999999987 58999988766543211 1123445666789999999999999999999999999999999
Q ss_pred HHhCCCccHHHHHHH-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCCCCCCCcchhhhhhcchhhHHHHHHHHHHHh
Q psy2416 179 QVLGCEKNQKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLFHVLESDIQDVCKRILRLY 257 (405)
Q Consensus 179 ~~l~~~~~~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~~~~~~~~~l~~~~~~il~ly 257 (405)
+.++.+ .++.+.| +|++|++.+++|+.|+|++||+||||+|+.+++.+. ..||+.|+++.++|.+|+.+|+++|
T Consensus 166 ~~l~~~--~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~~---~~W~~~~~~~~~~l~~~~~~il~ly 240 (285)
T 3rgf_B 166 QDMGQE--DMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDA---RQWFAELSVDMEKILEIIRVILKLY 240 (285)
T ss_dssp HHHTCH--HHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTCCC---HHHHHTSCSCHHHHHHHHHHHHHHH
T ss_pred HHhCCC--HHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCCCh---hhHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999975 6899999 999999999999999999999999999999998754 5899999999999999999999999
Q ss_pred cCCC
Q psy2416 258 TRPK 261 (405)
Q Consensus 258 ~~~~ 261 (405)
..++
T Consensus 241 ~~~~ 244 (285)
T 3rgf_B 241 EQWK 244 (285)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 9754
No 5
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.5e-43 Score=323.51 Aligned_cols=217 Identities=21% Similarity=0.297 Sum_probs=192.3
Q ss_pred ccccccccChhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccc-cchhhHHH
Q psy2416 21 LSLSNCLLPEEKLNPTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVR-HPMETTAM 99 (405)
Q Consensus 21 ~~~~~wlft~~~l~~tps~~~gi~~~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~-~~~~lva~ 99 (405)
.+.++|+||++||..+|+..++ + |..+++||.++|..|+||+.|+++|++||||||..+++.+ +++++|++
T Consensus 5 s~~~~w~ft~~~l~~~~~~~~~-----~---R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~ 76 (235)
T 1zp2_A 5 SQLTQLFLSTDLESLEPTCLSK-----D---TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVA 76 (235)
T ss_dssp GGGTGGGSCSSCTTSSCCCSCH-----H---HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHH
T ss_pred CCCCCCccCHHHHHHCCcchhH-----H---HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHH
Confidence 4678999999999988876532 1 9999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHhhcCCCcCHHHHHHHHHHHHHhhccCCCCcccchhHhhHHHHHHHHHHHHHHHHcCcceeeCChHHHHHHHHH
Q psy2416 100 GCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQ 179 (405)
Q Consensus 100 acl~LA~K~ee~~~~l~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~E~~iL~~L~F~l~~~~P~~~l~~~l~ 179 (405)
||||||||+||++++++||+.++..+. .+.|...+++|+.||..||++|+|+|.+++|+.||.+|++
T Consensus 77 acL~lA~K~Ee~~~~l~d~~~~~~~~~-------------~~~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~ 143 (235)
T 1zp2_A 77 TCIYLSCKVEECPVHIRTICNEANDLW-------------SLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFH 143 (235)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHTTC-------------CCSSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHH
T ss_pred HHHHHHhccccCcccHHHHHHHHHHHc-------------cchhhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHH
Confidence 999999999999999999998764321 0123334789999999999999999999999999999999
Q ss_pred HhCCCccHHHHHHH-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCCCCCCCcchhhhhhcchhhHHHHHHHHHHHhc
Q psy2416 180 VLGCEKNQKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLFHVLESDIQDVCKRILRLYT 258 (405)
Q Consensus 180 ~l~~~~~~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~~~~~~~~~l~~~~~~il~ly~ 258 (405)
.++.. +++.+.| +++++++.+++|+.|+|+.||+||||+|+.+++.++|....||. |+++++|.+|+.+|+++|.
T Consensus 144 ~~~~~--~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~i~~ly~ 219 (235)
T 1zp2_A 144 DGIIN--QKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIPKLLDLIK--STDAFKVILCVQRIISIYY 219 (235)
T ss_dssp TTSSC--HHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCTTHHHHHHHHCC--HHHHHHHHHHHHHHHHHHT
T ss_pred HcCCC--HHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcCCCCCCCcchhh--cCCHHHHHHHHHHHHHHHh
Confidence 87764 6789999 99999999999999999999999999999998876543335665 9999999999999999999
Q ss_pred CCCC
Q psy2416 259 RPKA 262 (405)
Q Consensus 259 ~~~~ 262 (405)
..+.
T Consensus 220 ~~~~ 223 (235)
T 1zp2_A 220 FEDI 223 (235)
T ss_dssp SSSH
T ss_pred hCCc
Confidence 8763
No 6
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=100.00 E-value=3e-40 Score=318.62 Aligned_cols=243 Identities=20% Similarity=0.286 Sum_probs=201.1
Q ss_pred cccccccccCh-hhhcC-------------------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC--CCHHHHHHHH
Q psy2416 20 ALSLSNCLLPE-EKLNP-------------------TPSMLDGLDPEVETDLRIIGCELIQTAGILLK--LPQVAMATGQ 77 (405)
Q Consensus 20 ~~~~~~wlft~-~~l~~-------------------tps~~~gi~~~~e~~~R~~~v~~I~~v~~~L~--L~~~t~~~A~ 77 (405)
..|..+|+|+. ++|+. .++..+|+++++|..+|..+++||.++|..|+ ||+.|+++|+
T Consensus 5 Stq~~~W~f~~~~~L~~~r~~~n~~~~~~~~~~~~~~~~~~~~lt~eeE~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~ 84 (323)
T 1jkw_A 5 SSQKRHWTFSSEEQLARLRADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTAC 84 (323)
T ss_dssp ------CCCSCHHHHHHHHHHHHHHHHHHHHHTSSSCTTCTTSCCHHHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHH
T ss_pred CccccccccCCHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45778999996 67642 26778899999999999999999999999999 9999999999
Q ss_pred HHHHHhcccCCccccchhhHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHhhccCCCCcccchhHhhHHHHHHHHHHHHH
Q psy2416 78 VLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRV 157 (405)
Q Consensus 78 ~~~~Rf~~~~s~~~~~~~lva~acl~LA~K~ee~~~~l~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~E~~i 157 (405)
+||||||..+++.++++++||+||||||||+||+++++.+|+.++. ..| ..+.+++++|+.||..|
T Consensus 85 ~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~~----------~~p----~~~~~~~~~Il~~E~~i 150 (323)
T 1jkw_A 85 MYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLR----------ESP----LGQEKALEQILEYELLL 150 (323)
T ss_dssp HHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSS----------SCH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHhc----------cCh----hhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999976320 011 11245689999999999
Q ss_pred HHHcCcceeeCChHHHHHHHHHHh-----CCCccHHHHHHH-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCCCCCC
Q psy2416 158 LKELGFCVHVKHPHKIIVTYLQVL-----GCEKNQKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPR 231 (405)
Q Consensus 158 L~~L~F~l~~~~P~~~l~~~l~~l-----~~~~~~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~ 231 (405)
|++|+|+|.++||+.||..|+..+ ++.....+.+.| .|+++++.+++|+.|+|++||+||||+|+..++.+++
T Consensus 151 L~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~IAaAai~lA~~~~~~~~~- 229 (323)
T 1jkw_A 151 IQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITME- 229 (323)
T ss_dssp HHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHHHHHHHHHHHHHHHHSCCCT-
T ss_pred HHHCCCcEEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCHHHHHHHHHHHHHHHcCCChH-
Confidence 999999999999999999999776 344346788999 9999999999999999999999999999999998764
Q ss_pred Ccchhhh-hh-----cchhhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHH
Q psy2416 232 NPAWYSL-FH-----VLESDIQDVCKRILRLYTRPKANTDELERQIEVIKKEYQLSK 282 (405)
Q Consensus 232 ~~~w~~~-~~-----~~~~~l~~~~~~il~ly~~~~~~~~~l~~~l~~~r~~~~~~k 282 (405)
.|+.. ++ ++.++|.+++..|.++|..+... -.+.++.+.+++..-.
T Consensus 230 --~w~~~l~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~---~~~~~k~i~~KL~~c~ 281 (323)
T 1jkw_A 230 --SYLSESLMLKENRTCLSQLLDIMKSMRNLVKKYEPP---RSEEVAVLKQKLDRCH 281 (323)
T ss_dssp --THHHHHTTSCSSSCCTHHHHHHHHHHHHHHHTCCCC---CHHHHHHHHHHHHHHH
T ss_pred --HHHHHHhccccccccHHHHHHHHHHHHHHHHccCCC---CHHHHHHHHHHHHHHh
Confidence 58874 34 47899999999999999986431 2345666666655444
No 7
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=1e-35 Score=284.87 Aligned_cols=217 Identities=16% Similarity=0.151 Sum_probs=183.1
Q ss_pred cccChhhh-cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccchhhHHHHHHHH
Q psy2416 26 CLLPEEKL-NPTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCL 104 (405)
Q Consensus 26 wlft~~~l-~~tps~~~gi~~~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~L 104 (405)
+|+..|+- .-.|++.++++.+.+..+|..+++||.+++..|+|++.|+++|++|||||+..+.+.+.++++||+|||||
T Consensus 44 ~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~l 123 (306)
T 3g33_B 44 SLLRLEERYVPRASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLL 123 (306)
T ss_dssp HHHHHGGGGSCSSCCTTTSTTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHhhcCccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 44444443 23456677778888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCC-CcCHHHHHHHHHHHHHhhccCCCCcccchhHhhHHHHHHHHHHHHHHHHcCcceeeCChHHHHHHHHHHhCC
Q psy2416 105 ASKIEEA-PRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLGC 183 (405)
Q Consensus 105 A~K~ee~-~~~l~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~E~~iL~~L~F~l~~~~P~~~l~~~l~~l~~ 183 (405)
|||+||. ++.+.+++.++ +..| .+++|+.||..||++|+|+|+++||++||..|++.++.
T Consensus 124 AsK~eE~~p~~~~~l~~~~-----------------~~~~--~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~ 184 (306)
T 3g33_B 124 ASKLRETTPLTIEKLCIYT-----------------DHAV--SPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSL 184 (306)
T ss_dssp HHHHHCSSCCCTTHHHHHT-----------------TTSS--CHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSC
T ss_pred HHHhccCCCCCHHHHHHHh-----------------ccCc--cHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCC
Confidence 9999996 56888887643 1222 37899999999999999999999999999999999876
Q ss_pred Ccc--HHHHHHH-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCCCCCCCcchhhhh----hcchhhHHHHHHHHHHH
Q psy2416 184 EKN--QKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLF----HVLESDIQDVCKRILRL 256 (405)
Q Consensus 184 ~~~--~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~~~----~~~~~~l~~~~~~il~l 256 (405)
... ..+.+.| +|+++++.+..|+.|+|++||+|||++|...++....+...|+..+ |++.++|.+|+..|+++
T Consensus 185 ~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~~~~l~~c~~~I~~l 264 (306)
T 3g33_B 185 PRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAA 264 (306)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 532 2366788 9999999999999999999999999999999986544444566655 89999999999999999
Q ss_pred hcCCC
Q psy2416 257 YTRPK 261 (405)
Q Consensus 257 y~~~~ 261 (405)
|...-
T Consensus 265 ~~~~l 269 (306)
T 3g33_B 265 LRESL 269 (306)
T ss_dssp HHTC-
T ss_pred HHHHH
Confidence 98753
No 8
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=2.4e-35 Score=277.99 Aligned_cols=232 Identities=21% Similarity=0.273 Sum_probs=194.4
Q ss_pred ccccChhhh-cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccchhhHHHHHHH
Q psy2416 25 NCLLPEEKL-NPTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVC 103 (405)
Q Consensus 25 ~wlft~~~l-~~tps~~~gi~~~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~ 103 (405)
+++...|.- .-.|+..++ + +.+..+|..+++||.++|..++|++.|+++|++|||||+..+++.+.++++||+||||
T Consensus 12 ~~l~~~E~~~~~~~~y~~~-q-~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~ 89 (269)
T 2b9r_A 12 AYLRQLEAAQAVRPKYLLG-R-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMF 89 (269)
T ss_dssp TTHHHHHHTTCCCTTTTSS-S-SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCcccccC-C-CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHH
Confidence 445544442 234555544 2 4556899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCC-CcCHHHHHHHHHHHHHhhccCCCCcccchhHhhHHHHHHHHHHHHHHHHcCcceeeCChHHHHHHHHHHhC
Q psy2416 104 LASKIEEA-PRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLG 182 (405)
Q Consensus 104 LA~K~ee~-~~~l~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~E~~iL~~L~F~l~~~~P~~~l~~~l~~l~ 182 (405)
||||+||. ++.+.|++.++ +..| .+++|+.||..||++|+|+++++||++||.+|++.++
T Consensus 90 iA~K~eE~~~p~~~d~~~~~-----------------~~~~--~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~ 150 (269)
T 2b9r_A 90 IASKYEEMYPPEIGDFAFVT-----------------DNTY--TKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGE 150 (269)
T ss_dssp HHHHHHCSSCCCHHHHHHHT-----------------CSSS--CHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSC
T ss_pred HHHhcccccCccHHHHHHHh-----------------cCCC--CHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcC
Confidence 99999998 77899998643 1122 3789999999999999999999999999999999887
Q ss_pred CCccHHHHHHH-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCCCCCCCcchhhh----hhcchhhHHHHHHHHHHHh
Q psy2416 183 CEKNQKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSL----FHVLESDIQDVCKRILRLY 257 (405)
Q Consensus 183 ~~~~~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~~----~~~~~~~l~~~~~~il~ly 257 (405)
.+ .++..+| +++++++.+..++.|+|+.||+|||++|..+++.+ .|... .|+++++|.+|+..|.+++
T Consensus 151 ~~--~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~-----~w~~~l~~~tg~~~~~l~~~~~~l~~~~ 223 (269)
T 2b9r_A 151 VD--VEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNG-----EWTPTLQHYLSYTEESLLPVMQHLAKNV 223 (269)
T ss_dssp CC--HHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCC-----CSCTTHHHHSCCCSSTTTTHHHHHHHHH
T ss_pred CC--HHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCC-----CCCHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 65 6788999 99999999999999999999999999999999874 45554 4899999999999999998
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHhhhhcc
Q psy2416 258 TRPKANTDELERQIEVIKKEYQLSKDRKVLV 288 (405)
Q Consensus 258 ~~~~~~~~~l~~~l~~~r~~~~~~k~k~~~~ 288 (405)
...... +..+.++++||...+...+..
T Consensus 224 ~~~~~~----~~~~~ai~~Ky~~~~~~~vs~ 250 (269)
T 2b9r_A 224 VMVNQG----LTKHMTVKNKYATSKHAKIST 250 (269)
T ss_dssp HHTTTS----CCSCCHHHHHTTSGGGTTGGG
T ss_pred HHhcCC----CcchHHHHHHhcchhhCcccC
Confidence 754321 134678899999888766653
No 9
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=1.4e-35 Score=278.44 Aligned_cols=214 Identities=22% Similarity=0.305 Sum_probs=186.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccchhhHHHHHHHHHHhhcCC-CcCHHHHHHHH
Q psy2416 44 DPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEA-PRRIRDVINVF 122 (405)
Q Consensus 44 ~~~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~LA~K~ee~-~~~l~~i~~~~ 122 (405)
+.+.+..+|..+++||.+++..|+|++.|+++|++|||||+..+++.+.+++++|+||||||||+||. ++.+.|++.++
T Consensus 31 q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~ 110 (260)
T 2cch_B 31 QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYIT 110 (260)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHH
Confidence 34445689999999999999999999999999999999999999999999999999999999999998 88999998743
Q ss_pred HHHHHhhccCCCCcccchhHhhHHHHHHHHHHHHHHHHcCcceeeCChHHHHHHHHHHhCCCccHHHHHHH-HHHHHhcC
Q psy2416 123 HHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLGCEKNQKLMQLA-NYMNDSLR 201 (405)
Q Consensus 123 ~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~E~~iL~~L~F~l~~~~P~~~l~~~l~~l~~~~~~~l~~~A-~~l~d~~~ 201 (405)
+..| .+++|+.||..||++|+|+++++||++||.+|++.++.+. .++.++| +++++++.
T Consensus 111 -----------------~~~~--~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~-~~~~~~a~~l~e~sl~ 170 (260)
T 2cch_B 111 -----------------DDTY--TKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPAN-CKVESLAMFLGELSLI 170 (260)
T ss_dssp -----------------TSSS--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCC-HHHHHHHHHHHHHHHH
T ss_pred -----------------cCCc--CHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHHHH
Confidence 1223 3789999999999999999999999999999999988753 4788999 99999887
Q ss_pred Ccc-cccCChHHHHHHHHHHHHHHcCCCCCCCcchhhhh----hcchhhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHH
Q psy2416 202 TDV-FVRYDPETIASACIYLTARKLRIPLPRNPAWYSLF----HVLESDIQDVCKRILRLYTRPKANTDELERQIEVIKK 276 (405)
Q Consensus 202 t~~-~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~~~----~~~~~~l~~~~~~il~ly~~~~~~~~~l~~~l~~~r~ 276 (405)
+.. ++.|+|+.||+|||++|...++. +.|+..+ |++.++|.+|+..|.++|..... ..+.++++
T Consensus 171 ~~~~~~~~~Ps~iAaAai~lA~~~~~~-----~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~~~~~------~~~~~i~~ 239 (260)
T 2cch_B 171 DADPYLKYLPSVIAGAAFHLALYTVTG-----QSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQ------HAQQSIRE 239 (260)
T ss_dssp CHHHHTTSCHHHHHHHHHHHHHHHHHS-----CCSCHHHHHHHCCCHHHHHHHHHHHHHHHHHGGG------SSCCHHHH
T ss_pred hHHHHhCCCHHHHHHHHHHHHHHHhCC-----CcchHHHHHHhCcCHHHHHHHHHHHHHHHHhcCC------cchHHHHH
Confidence 776 99999999999999999999875 3577654 89999999999999999876432 24578888
Q ss_pred HHHHHHhhhhcc
Q psy2416 277 EYQLSKDRKVLV 288 (405)
Q Consensus 277 ~~~~~k~k~~~~ 288 (405)
||...+...+..
T Consensus 240 Ky~~~~~~~vs~ 251 (260)
T 2cch_B 240 KYKNSKYHGVSL 251 (260)
T ss_dssp HHTSGGGTTGGG
T ss_pred HHCcccccceeC
Confidence 998887766553
No 10
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=9.1e-35 Score=272.33 Aligned_cols=201 Identities=14% Similarity=0.143 Sum_probs=173.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccchhhHHHHHHHHHHhhcCC-CcCHHHHHHH
Q psy2416 43 LDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEA-PRRIRDVINV 121 (405)
Q Consensus 43 i~~~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~LA~K~ee~-~~~l~~i~~~ 121 (405)
.+.+.+..+|..+|+||.+++..|+|+++|+++|++|||||+..+.+.+.+++++|+||||||||+||. ++.+.+++.+
T Consensus 42 ~q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~ 121 (257)
T 1g3n_C 42 FQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYA 121 (257)
T ss_dssp HTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHH
T ss_pred cCccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHH
Confidence 444556789999999999999999999999999999999999999999999999999999999999997 7889999864
Q ss_pred HHHHHHhhccCCCCcccchhHhhHHHHHHHHHHHHHHHHcCcceeeCChHHHHHHHHHHhCCCcc--HHHHHHH-HHHHH
Q psy2416 122 FHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLGCEKN--QKLMQLA-NYMND 198 (405)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~E~~iL~~L~F~l~~~~P~~~l~~~l~~l~~~~~--~~l~~~A-~~l~d 198 (405)
+ +..| .+++|+.||..||++|+|+++++||++||..|++.++.+.. ..+.+.| +++++
T Consensus 122 ~-----------------~~~~--~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~ 182 (257)
T 1g3n_C 122 A-----------------ADSF--SRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQHLDFWHHEVNTLITK 182 (257)
T ss_dssp T-----------------TTCS--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHH
T ss_pred H-----------------CCCC--CHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHH
Confidence 3 2223 37899999999999999999999999999999999987542 2356778 99999
Q ss_pred hcCCcccccCChHHHHHHHHHHHHHHcCCCCCC-Ccchhhhh----hcchhhHHHHHHHHHHHhcCCCC
Q psy2416 199 SLRTDVFVRYDPETIASACIYLTARKLRIPLPR-NPAWYSLF----HVLESDIQDVCKRILRLYTRPKA 262 (405)
Q Consensus 199 ~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~-~~~w~~~~----~~~~~~l~~~~~~il~ly~~~~~ 262 (405)
++.+..++.|+|+.||+|||++|...++.+.+. .+.|...+ |++.++|.+|+..|.++|...+.
T Consensus 183 ~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~~~~~l~~c~~~i~~l~~~~~~ 251 (257)
T 1g3n_C 183 ALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGCDVSVLQAAVEQILTSVSDFDL 251 (257)
T ss_dssp HHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTCCHHHHHHHHHHHHHHHHHCCC
T ss_pred HHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCH
Confidence 999999999999999999999999999864322 13577765 89999999999999999877653
No 11
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=1.6e-34 Score=272.77 Aligned_cols=218 Identities=16% Similarity=0.221 Sum_probs=178.6
Q ss_pred ccccChhhhc-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccchhhHHHHHHH
Q psy2416 25 NCLLPEEKLN-PTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVC 103 (405)
Q Consensus 25 ~wlft~~~l~-~tps~~~gi~~~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~ 103 (405)
++++..|+.. ..|+...+++.+....+|.++++||.+++..++|++.|+++|++|||||+...++.+.++++||+||||
T Consensus 29 ~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~ 108 (271)
T 2w96_A 29 RAMLKAEETCAPSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMF 108 (271)
T ss_dssp HHHHHHHHHTCCCTTHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHhcCCcCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHH
Confidence 3444444421 233333344555567899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCC-CcCHHHHHHHHHHHHHhhccCCCCcccchhHhhHHHHHHHHHHHHHHHHcCcceeeCChHHHHHHHHHHhC
Q psy2416 104 LASKIEEA-PRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLG 182 (405)
Q Consensus 104 LA~K~ee~-~~~l~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~E~~iL~~L~F~l~~~~P~~~l~~~l~~l~ 182 (405)
||||+||+ |+.+.+++.++ +..| .+++|+.||..||++|+|+++++||++||.+|+..++
T Consensus 109 iAsK~EE~~p~~~~~~~~~~-----------------~~~~--~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~ 169 (271)
T 2w96_A 109 VASKMKETIPLTAEKLCIYT-----------------DNSI--RPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMP 169 (271)
T ss_dssp HHHHHHCSSCCCHHHHHHHT-----------------TTSS--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSC
T ss_pred HHHHHhhcCCCCHHHHHHHh-----------------cCCC--CHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcC
Confidence 99999998 88999997642 2223 4789999999999999999999999999999999988
Q ss_pred CCcc--HHHHHHH-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCCCCCCCcchhh--------hhhcchhhHHHHHH
Q psy2416 183 CEKN--QKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYS--------LFHVLESDIQDVCK 251 (405)
Q Consensus 183 ~~~~--~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~--------~~~~~~~~l~~~~~ 251 (405)
.... ..+.+.| +++++++.+..++.|+|+.||+||||+|...++.+.+..+.|+. ..|+++++|.+|++
T Consensus 170 ~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~~v~~~~l~~c~~ 249 (271)
T 2w96_A 170 EAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRACQE 249 (271)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 7532 1234678 89998888888999999999999999999988754333334543 24899999999999
Q ss_pred HHHHHhcCCC
Q psy2416 252 RILRLYTRPK 261 (405)
Q Consensus 252 ~il~ly~~~~ 261 (405)
.|.++|....
T Consensus 250 ~i~~l~~~~~ 259 (271)
T 2w96_A 250 QIEALLESSL 259 (271)
T ss_dssp HHHHHHTTTT
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 12
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=1.5e-33 Score=263.58 Aligned_cols=203 Identities=14% Similarity=0.230 Sum_probs=170.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccchhhHHHHHHHHHHhhcCC-CcCH
Q psy2416 37 PSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEA-PRRI 115 (405)
Q Consensus 37 ps~~~gi~~~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~LA~K~ee~-~~~l 115 (405)
|...++.+.+.+..+|..+++||.+++..|+|+++|+++|++|||||+..+.+.+.+++++|+||||||||+||. ++.+
T Consensus 37 ~~y~~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~ 116 (254)
T 2f2c_A 37 FTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTV 116 (254)
T ss_dssp CSSTTTTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCH
T ss_pred chhhhhcCccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCH
Confidence 344444556667789999999999999999999999999999999999999999999999999999999999995 7889
Q ss_pred HHHHHHHHHHHHhhccCCCCcccchhHhhHHHHHHHHHHHHHHHHcCcceeeCChHHHHHHHHHHhCCCcc--HHHHHHH
Q psy2416 116 RDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLGCEKN--QKLMQLA 193 (405)
Q Consensus 116 ~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~E~~iL~~L~F~l~~~~P~~~l~~~l~~l~~~~~--~~l~~~A 193 (405)
.|++.++ +..| .+++|+.||..||++|+|+++++||++||..|++.++.+.. ..+.+.|
T Consensus 117 ~d~~~~~-----------------~~~~--~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a 177 (254)
T 2f2c_A 117 SKLTYLS-----------------CDCF--TNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDLWPQLYEAA 177 (254)
T ss_dssp HHHSTTC--------------------C--CHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGGGHHHHHHHH
T ss_pred HHHHHHh-----------------CCCC--CHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhhHHHHHHHH
Confidence 9987532 2233 37899999999999999999999999999999999987542 1346678
Q ss_pred -HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCCCCCCCcch---hh----hhhcchhhHHHHHHHHHHHhcCCC
Q psy2416 194 -NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAW---YS----LFHVLESDIQDVCKRILRLYTRPK 261 (405)
Q Consensus 194 -~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w---~~----~~~~~~~~l~~~~~~il~ly~~~~ 261 (405)
+++++++.+..++.|+|+.||+|||++|....+.. ...| .. ..|++.++|.+|++.|.+++..+.
T Consensus 178 ~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~---~~~w~~~~~~l~~~tg~~~~~l~~c~~~i~~~~~~~~ 250 (254)
T 2f2c_A 178 STTICKALIQPNIALLSPGLICAGGLLTTIETDNTN---CRPWTCYLEDLSSILNFSTNTVRTVKDQVSEAFSLYD 250 (254)
T ss_dssp HHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCS---SCCTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCC---CCChHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999985221 0113 22 238999999999999999987764
No 13
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.98 E-value=7e-32 Score=244.78 Aligned_cols=182 Identities=18% Similarity=0.247 Sum_probs=166.7
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccchhhHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHhhcc
Q psy2416 52 RIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQ 131 (405)
Q Consensus 52 R~~~v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~LA~K~ee~~~~l~~i~~~~~~~~~~~~~ 131 (405)
...+.++|.++|..|+||+.|+++|++||+||+..+++++.++++|++||||||||+||.|+++.||+.++.
T Consensus 5 l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~-------- 76 (207)
T 1c9b_A 5 MMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-------- 76 (207)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSS--------
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHC--------
Confidence 356889999999999999999999999999999999999999999999999999999999999999987541
Q ss_pred CCCCcccchhHhhHHHHHHHHHHHHHHHHcCcceeeCChHHHHHHHHHHhCCCccHHHHHHH-HHHHHhcCCcccccCCh
Q psy2416 132 KSITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLGCEKNQKLMQLA-NYMNDSLRTDVFVRYDP 210 (405)
Q Consensus 132 ~~~~~~~~d~~~~~~~~~i~~~E~~iL~~L~F~l~~~~P~~~l~~~l~~l~~~~~~~l~~~A-~~l~d~~~t~~~l~~~P 210 (405)
..+++|..+|..||+.|+|++.+++|+.||.+|++.++++ .++.+.| .++++++.++++++|+|
T Consensus 77 -------------~~~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~--~~~~~~A~~i~~~~~~~~l~~g~~P 141 (207)
T 1c9b_A 77 -------------ISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLP--KQVQMAATHIARKAVELDLVPGRSP 141 (207)
T ss_dssp -------------SCHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHTTCSTTCCH
T ss_pred -------------CCHHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHcCccCCCCh
Confidence 1156899999999999999999999999999999999986 6788999 99999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcchhhhhhcchhhHHHHHHHHHHHh
Q psy2416 211 ETIASACIYLTARKLRIPLPRNPAWYSLFHVLESDIQDVCKRILRLY 257 (405)
Q Consensus 211 s~IAaA~i~lA~~~~~~~l~~~~~w~~~~~~~~~~l~~~~~~il~ly 257 (405)
+.||+||||+|+.++|.+.+. .+|...+|+++.+|.+++++|.+..
T Consensus 142 ~~IAaAaiylA~~~~~~~~~~-~~i~~~~~v~~~tI~~~~~~l~~~l 187 (207)
T 1c9b_A 142 ISVAAAAIYMASQASAEKRTQ-KEIGDIAGVADVTIRQSYRLIYPRA 187 (207)
T ss_dssp HHHHHHHHHHHHHTSSSCCCH-HHHHHHHTCCHHHHHHHHHHHGGGH
T ss_pred HHHHHHHHHHHHHHHCCCCCH-HHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 999999999999999987543 4788999999999999999987653
No 14
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=99.98 E-value=3.8e-32 Score=252.68 Aligned_cols=200 Identities=13% Similarity=0.154 Sum_probs=166.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccchhhHHHHHHHHHHhhcCC-CcCHHHHH
Q psy2416 41 DGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEA-PRRIRDVI 119 (405)
Q Consensus 41 ~gi~~~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~LA~K~ee~-~~~l~~i~ 119 (405)
.+.+.+....+|..+|+||.+|+..++|.++|+++|++|||||+..+.+.+.++|+||+||||||||+||. |+.+.+++
T Consensus 38 ~~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~ 117 (252)
T 1f5q_B 38 VNVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLA 117 (252)
T ss_dssp SSHHHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHH
T ss_pred CccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 34566677889999999999999999999999999999999999999999999999999999999999997 67889987
Q ss_pred HHHHHHHHhhccCCCCcccchhHhhHHHHHHHHHHHHHHHHcCcceeeCChHHHHHHHHHHhCCCcc--HHHHHHH-HHH
Q psy2416 120 NVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLGCEKN--QKLMQLA-NYM 196 (405)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~E~~iL~~L~F~l~~~~P~~~l~~~l~~l~~~~~--~~l~~~A-~~l 196 (405)
..+ +..| .+++|+.||..||++|+|+++++||++||..|++.++.... ..+...| +++
T Consensus 118 ~~~-----------------~~~y--t~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~~~~~~~~~~a~~~l 178 (252)
T 1f5q_B 118 YLC-----------------GGAT--TADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPREDYLNIYNLCRPKI 178 (252)
T ss_dssp HHH-----------------CTTC--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHh-----------------CCCC--CHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHH
Confidence 643 2223 37899999999999999999999999999999999887532 2466788 888
Q ss_pred HHhcCCcccccCChHHHHHHHHHHHHHHcCCCCCCCcchh----hhhhcchhhHHHHHHHHHHHhcCCCC
Q psy2416 197 NDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWY----SLFHVLESDIQDVCKRILRLYTRPKA 262 (405)
Q Consensus 197 ~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~----~~~~~~~~~l~~~~~~il~ly~~~~~ 262 (405)
..++....++.|+|++||+||+.++. +...++...|. ...|++.++|.+|++.|.+++.....
T Consensus 179 ~~~l~d~~~l~~~PS~iAaaa~~~~l---~~~~~~~~~~~~~L~~~t~~~~~~l~~C~~~i~~~l~~~~~ 245 (252)
T 1f5q_B 179 FCALCDGRSAMKRPVLITLACMHLTM---NQKYDYYENRIDGVCKSLYITKEELHQCCDLVDIAIVSFDE 245 (252)
T ss_dssp HHHHHCHHHHTSCHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHhchhhhccCHHHHHHHHHHHHh---ccCCCchhhHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhCh
Confidence 88888888999999999999965443 32222211222 34489999999999999988866554
No 15
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.97 E-value=2.2e-31 Score=252.42 Aligned_cols=188 Identities=14% Similarity=0.212 Sum_probs=162.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhccc-CCccccchhhHHHHHHHHHHhhcCC-CcCHHHHHHH
Q psy2416 44 DPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYS-KSFVRHPMETTAMGCVCLASKIEEA-PRRIRDVINV 121 (405)
Q Consensus 44 ~~~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~-~s~~~~~~~lva~acl~LA~K~ee~-~~~l~~i~~~ 121 (405)
+.+....+|..+++||.+++..++|++.|+++|++|||||+.. +.+.+.+++++|+||||||||+||. ++.+.+++.+
T Consensus 42 q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i 121 (283)
T 1w98_B 42 HPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYV 121 (283)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHH
Confidence 3444568999999999999999999999999999999999997 6899999999999999999999998 7789999764
Q ss_pred HHHHHHhhccCCCCcccchhHhhHHHHHHHHHHHHHHHHcCcceeeCChHHHHHHHHHHhCCCcc---------HHHHHH
Q psy2416 122 FHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLGCEKN---------QKLMQL 192 (405)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~E~~iL~~L~F~l~~~~P~~~l~~~l~~l~~~~~---------~~l~~~ 192 (405)
+ +..| .+++|+.||..||++|+|+++++||++||..|++.++.+.. ......
T Consensus 122 ~-----------------~~~~--~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~ 182 (283)
T 1w98_B 122 T-----------------DGAC--SGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQ 182 (283)
T ss_dssp T-----------------TTSS--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHH
T ss_pred H-----------------cCCC--CHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCchhhHHHHhhhHHHHHH
Confidence 2 2223 37899999999999999999999999999999998876421 223345
Q ss_pred H-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCCCCCCCcchhhhhhcchhhHHHHHHHHHHHhc
Q psy2416 193 A-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLFHVLESDIQDVCKRILRLYT 258 (405)
Q Consensus 193 A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~~~~~~~~~l~~~~~~il~ly~ 258 (405)
+ ++++.++.+..++.|+|++|||||||+|+. .+.|....|+++++|.+|++.|..++.
T Consensus 183 ~~~llelsl~d~~~l~~~PS~iAaAai~la~~--------~~~l~~~tg~~~~~i~~c~~~l~~~~~ 241 (283)
T 1w98_B 183 IAELLDLCVLDVDCLEFPYGILAASALYHFSS--------SELMQKVSGYQWCDIENCVKWMVPFAM 241 (283)
T ss_dssp HHHHHHHHHHSGGGGGSCHHHHHHHHHHHTSC--------HHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHC--------hHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 6 888888888889999999999999999863 246788889999999999999998865
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.95 E-value=2e-27 Score=214.25 Aligned_cols=183 Identities=14% Similarity=0.242 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccchhhHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHhhccC
Q psy2416 53 IIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQK 132 (405)
Q Consensus 53 ~~~v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~LA~K~ee~~~~l~~i~~~~~~~~~~~~~~ 132 (405)
..++++|.++|..|+||+.++.+|+.||++|+..+.+.+.+++.|++||||+|||+|+.|+.+.||+.++.
T Consensus 10 ~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~--------- 80 (200)
T 1ais_B 10 AFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIAR--------- 80 (200)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTT---------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHC---------
Confidence 47889999999999999999999999999999999999999999999999999999999999999987642
Q ss_pred CCCcccchhHhhHHHHHHHHHHHHHHHHcCcceee--CChHHHHHHHHHHhCCCccHHHHHHH-HHHHHhcCCcccccCC
Q psy2416 133 SITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHV--KHPHKIIVTYLQVLGCEKNQKLMQLA-NYMNDSLRTDVFVRYD 209 (405)
Q Consensus 133 ~~~~~~~d~~~~~~~~~i~~~E~~iL~~L~F~l~~--~~P~~~l~~~l~~l~~~~~~~l~~~A-~~l~d~~~t~~~l~~~ 209 (405)
. .+.+|..+|..|++.|||++.+ .+|+.||.+|+..++++ .++.+.| .+++++..++++.++.
T Consensus 81 ------v------~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~--~~v~~~A~~i~~~~~~~~~~~gr~ 146 (200)
T 1ais_B 81 ------V------DKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLS--EKVRRRAIEILDEAYKRGLTSGKS 146 (200)
T ss_dssp ------S------CHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCC--HHHHHHHHHHHHHHHHTTCCTTSC
T ss_pred ------C------CHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHcCcccCCC
Confidence 1 1568999999999999999999 99999999999999986 6789999 9999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCcchhhhhhcchhhHHHHHHHHHHHhcC
Q psy2416 210 PETIASACIYLTARKLRIPLPRNPAWYSLFHVLESDIQDVCKRILRLYTR 259 (405)
Q Consensus 210 Ps~IAaA~i~lA~~~~~~~l~~~~~w~~~~~~~~~~l~~~~~~il~ly~~ 259 (405)
|..||+||||+|+.++|.+.+. .++....|+++.+|.+++++|.+.+..
T Consensus 147 P~~iAaAaly~A~~~~~~~~t~-~ei~~~~~vs~~ti~~~~~~l~~~l~~ 195 (200)
T 1ais_B 147 PAGLVAAALYIASLLEGEKRTQ-REVAEVARVTEVTVRNRYKELVEKLKI 195 (200)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCH-HHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhCCCCCH-HHHHHHhCCCHHHHHHHHHHHHHHcCC
Confidence 9999999999999999986533 367777899999999999999887653
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.93 E-value=5.3e-27 Score=228.10 Aligned_cols=223 Identities=16% Similarity=0.146 Sum_probs=92.7
Q ss_pred CCCCCCCCCccccccccccccChhhhcCCCCCCCCCCHH--H------H-------HHHHHHHHHHHHHHHHhcCCCHHH
Q psy2416 8 SLKAPPKPYGKIALSLSNCLLPEEKLNPTPSMLDGLDPE--V------E-------TDLRIIGCELIQTAGILLKLPQVA 72 (405)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~wlft~~~l~~tps~~~gi~~~--~------e-------~~~R~~~v~~I~~v~~~L~L~~~t 72 (405)
+++++++++|... +.++....|...-....+-+.. . . ..--..+..+|..+|..|+||+.+
T Consensus 71 ~~~~~~srvG~~~----~~~~~~~~l~T~I~~~~~~~~~~~r~l~~~~~~~~~~~~er~l~~a~~~I~~~~~~L~Lp~~v 146 (345)
T 3k7a_M 71 HNGDDPSRVGEAS----NPLLDGNNLSTRIGKGETTDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAELPKIV 146 (345)
T ss_dssp ----------CCC----CCSSSCCCCCCCCCCTTSCCHHHHHHHHHHHHHHTTSSCCTTHHHHHHHHHHHHHHTTCCHHH
T ss_pred ccCCCCCccCCCC----CccccCCCCceeeccCCCCCchhhhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 4577899999986 6666666665433321100100 0 0 011246779999999999999999
Q ss_pred HHHHHHHHHHhcccCCccccchhhHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHhhccCCCCcccchhHhhHHHHHHHH
Q psy2416 73 MATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIK 152 (405)
Q Consensus 73 ~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~LA~K~ee~~~~l~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~ 152 (405)
+.+|+.||++|+..+.++..+.+.|++||||||||.|+.|+.+.||+.++. + .+++|..
T Consensus 147 ~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~prtl~ei~~~~~---------------v------~~keIgr 205 (345)
T 3k7a_M 147 KDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIH---------------V------KTKEFGK 205 (345)
T ss_dssp HTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBSSCCHHHHHHSSS---------------C------CSHHHHH
T ss_pred HHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHC---------------C------CHHHHHH
Confidence 999999999999999999999999999999999999999999999987541 0 1458889
Q ss_pred HHHHHHHHcC------------cceeeCChHHHHHHHHHHhCCCccHHHHHHH-HHHHHhcCCcccccCChHHHHHHHHH
Q psy2416 153 AERRVLKELG------------FCVHVKHPHKIIVTYLQVLGCEKNQKLMQLA-NYMNDSLRTDVFVRYDPETIASACIY 219 (405)
Q Consensus 153 ~E~~iL~~L~------------F~l~~~~P~~~l~~~l~~l~~~~~~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~ 219 (405)
++..|++.|+ |++.+.+|+.||.+|+..|+++ .++.+.| .+++++..+.++..+.|..||+||||
T Consensus 206 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~--~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIy 283 (345)
T 3k7a_M 206 TLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLP--MQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIY 283 (345)
T ss_dssp HHHHHHHHHTCC--------------------------------------------------------------------
T ss_pred HHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHH
Confidence 9999999998 9999999999999999999986 6789999 99999999999999999999999999
Q ss_pred HHHHHcCCCCCCCcchhhhhhcchhhHHHHHHHHHHHhc
Q psy2416 220 LTARKLRIPLPRNPAWYSLFHVLESDIQDVCKRILRLYT 258 (405)
Q Consensus 220 lA~~~~~~~l~~~~~w~~~~~~~~~~l~~~~~~il~ly~ 258 (405)
+|+.+++.+++. .+|....++++..|.+++++|.+.+.
T Consensus 284 lAa~~~~~~~t~-~eIa~~~~Vse~TIr~~ykel~~~~~ 321 (345)
T 3k7a_M 284 LNILLFQIPITA-AKVGQTLQVTEGTIKSGYKILYEHRD 321 (345)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHCCCCCH-HHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 999999987643 57999999999999999999988764
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.87 E-value=2.1e-22 Score=195.12 Aligned_cols=229 Identities=16% Similarity=0.153 Sum_probs=102.0
Q ss_pred CCCC-CCCCCCCCCCccccccccccccChhhhcCCCCCCCCCCH--HHHH---HH----------HHHHHHHHHHHHHhc
Q psy2416 3 SHKP-ESLKAPPKPYGKIALSLSNCLLPEEKLNPTPSMLDGLDP--EVET---DL----------RIIGCELIQTAGILL 66 (405)
Q Consensus 3 ~~~~-~~~~~~~~~~~~~~~~~~~wlft~~~l~~tps~~~gi~~--~~e~---~~----------R~~~v~~I~~v~~~L 66 (405)
+|.. |+++++++++|... |.++....|.+.-+...+-+. ...+ +. -..+...|.++|..|
T Consensus 65 ~f~~d~~~~~d~sRvG~~~----~~~~~~~glsT~I~~~~~~~~~~~~~L~r~q~r~~~~~~er~L~~a~~~I~~~~~~L 140 (345)
T 4bbr_M 65 TFSNDDHNGDDPSRVGEAS----NPLLDGNNLSTRIGKGETTDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAA 140 (345)
T ss_dssp TTSCSCSSSCCSSCCEEEE----CHHHHCSCCCCEEECCSSCCHHHHHHHHHHHHHTCCCCSSSSTTHHHHHHHHHHHHT
T ss_pred CCCcccccCCCcCCCCCCC----CccccCCCcceeecCCCCcchhhHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHc
Confidence 3444 34789999999986 666666666443222222221 1111 11 155778999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccCCccccchhhHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHhhccCCCCcccchhHhhHH
Q psy2416 67 KLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTL 146 (405)
Q Consensus 67 ~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~LA~K~ee~~~~l~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 146 (405)
+||..+..+|..||++++..+.++......|++||||+|||.++.|+.+.||..++. + +
T Consensus 141 ~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl~eI~~~~~-v--------------~------ 199 (345)
T 4bbr_M 141 ELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIH-V--------------K------ 199 (345)
T ss_dssp TCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHHT-C--------------C------
T ss_pred CCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccHHHHHHHhC-C--------------C------
Confidence 999999999999999999999999999999999999999999999999999988652 1 1
Q ss_pred HHHHHHHHHHHHHHcCcc------------eeeCChHHHHHHHHHHhCCCccHHHHHHH-HHHHHhcCCcccccCChHHH
Q psy2416 147 KTQVIKAERRVLKELGFC------------VHVKHPHKIIVTYLQVLGCEKNQKLMQLA-NYMNDSLRTDVFVRYDPETI 213 (405)
Q Consensus 147 ~~~i~~~E~~iL~~L~F~------------l~~~~P~~~l~~~l~~l~~~~~~~l~~~A-~~l~d~~~t~~~l~~~Ps~I 213 (405)
+.+|..+...|++.|++. +...+|.+||.+|+..|++. .++...| .++..+....++....|..|
T Consensus 200 ~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~--~~v~~~A~~i~~~~~~~~i~~GR~P~~I 277 (345)
T 4bbr_M 200 TKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLP--MQVTTSAEYTAKKCKEIKEIAGKSPITI 277 (345)
T ss_dssp TTHHHHHHHHHHHCC-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHHhcccccCCChHHH
Confidence 347778888888888864 66789999999999999986 6788999 99999988889999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCcchhhhhhcchhhHHHHHHHHHHHhcC
Q psy2416 214 ASACIYLTARKLRIPLPRNPAWYSLFHVLESDIQDVCKRILRLYTR 259 (405)
Q Consensus 214 AaA~i~lA~~~~~~~l~~~~~w~~~~~~~~~~l~~~~~~il~ly~~ 259 (405)
|+||||+|+.+++.++.. .+.....++++..|.+.+++|++....
T Consensus 278 AAAaIylAa~l~g~~~t~-~eIa~v~~Vse~TIr~rykel~~~~~~ 322 (345)
T 4bbr_M 278 AVVSIYLNILLFQIPITA-AKVGQTLQVTEGTIKSGYKILYEHRDK 322 (345)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHHHhCCCCCH-HHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999986643 357778899999999999888766443
No 19
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=98.16 E-value=5.3e-06 Score=73.73 Aligned_cols=89 Identities=15% Similarity=0.132 Sum_probs=75.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccchhhHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHhhccCCCC
Q psy2416 56 CELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKSIT 135 (405)
Q Consensus 56 v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~LA~K~ee~~~~l~~i~~~~~~~~~~~~~~~~~ 135 (405)
.++|..+|..|+|+..+..+|..++++......+..+.+..|++||||+||+..+.++...+|..+...
T Consensus 109 ~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~~v----------- 177 (200)
T 1ais_B 109 TDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARV----------- 177 (200)
T ss_dssp GGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTC-----------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCC-----------
Confidence 478999999999999999999999999998888889999999999999999999999999999876521
Q ss_pred cccchhHhhHHHHHHHHHHHHHHHHcCcce
Q psy2416 136 PMLLTTQYMTLKTQVIKAERRVLKELGFCV 165 (405)
Q Consensus 136 ~~~~d~~~~~~~~~i~~~E~~iL~~L~F~l 165 (405)
....|...-.+|.+.||.++
T Consensus 178 ----------s~~ti~~~~~~l~~~l~~~~ 197 (200)
T 1ais_B 178 ----------TEVTVRNRYKELVEKLKIKV 197 (200)
T ss_dssp ----------CHHHHHHHHHHHHHHHTCCC
T ss_pred ----------CHHHHHHHHHHHHHHcCCCC
Confidence 13466666777788887654
No 20
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=97.88 E-value=5.9e-05 Score=69.96 Aligned_cols=104 Identities=10% Similarity=0.006 Sum_probs=77.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcccC---CccccchhhHHHHHHHHHHhhcC-CCcCHHHHHHHHHHHHHhhcc
Q psy2416 56 CELIQTAGILLKLPQVAMATGQVLFQRFYYSK---SFVRHPMETTAMGCVCLASKIEE-APRRIRDVINVFHHIRQVMNQ 131 (405)
Q Consensus 56 v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~---s~~~~~~~lva~acl~LA~K~ee-~~~~l~~i~~~~~~~~~~~~~ 131 (405)
.+||..+...-+++..++-.|++|++|+.... .+.....+-+.+|||.||+|+-+ ..-.-.....+. .
T Consensus 78 ~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVg-G------- 149 (293)
T 2pmi_B 78 FNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVG-G------- 149 (293)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHH-T-------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhcc-C-------
Confidence 46888888999999999999999999997742 34566788999999999999754 443333333321 0
Q ss_pred CCCCcccchhHhhHHHHHHHHHHHHHHHHcCcceeeCChHHHHHHHHHHh
Q psy2416 132 KSITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVL 181 (405)
Q Consensus 132 ~~~~~~~~d~~~~~~~~~i~~~E~~iL~~L~F~l~~~~P~~~l~~~l~~l 181 (405)
+ ..++|-.||..+|..|+|+|.+. +.+|...+++..
T Consensus 150 -----------i--sl~ELN~LE~eFL~lLdf~L~V~-~ee~~~cy~E~~ 185 (293)
T 2pmi_B 150 -----------V--RCHELNILENDFLKRVNYRIIPR-DHNITLCSIEQK 185 (293)
T ss_dssp -----------S--CHHHHHHHHHHHHHTTTTCCSCC-TTHHHHHHHHSC
T ss_pred -----------c--CHHHHHHHHHHHHHHcCCceeeC-HHHHHHHHHHHh
Confidence 0 15699999999999999999876 556655555443
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=97.68 E-value=8.8e-05 Score=66.11 Aligned_cols=67 Identities=10% Similarity=0.095 Sum_probs=60.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccchhhHHHHHHHHHHhhcCCCcCHHHHHHHH
Q psy2416 56 CELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVF 122 (405)
Q Consensus 56 v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~LA~K~ee~~~~l~~i~~~~ 122 (405)
..+|..++..|+++..+..+|..+++.-+...-+..+.+..||+||||+||+..+.++...+|..++
T Consensus 103 ~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~~ 169 (207)
T 1c9b_A 103 GDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIA 169 (207)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHh
Confidence 4678999999999999999999999998887778899999999999999999999988888887654
No 22
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.00054 Score=65.99 Aligned_cols=67 Identities=15% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccchhhHHHHHHHHHHhhcCCCcCHHHHHHHH
Q psy2416 56 CELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVF 122 (405)
Q Consensus 56 v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~LA~K~ee~~~~l~~i~~~~ 122 (405)
.++|..+|..|+|+..+..+|+.|+++......+..+.+..||+|||||||.+.+..++..+|..++
T Consensus 236 ~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~ 302 (345)
T 3k7a_M 236 LTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTL 302 (345)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 4778899999999999999999999999887777888999999999999999988777777776654
No 23
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=96.14 E-value=0.016 Score=55.53 Aligned_cols=90 Identities=13% Similarity=0.102 Sum_probs=72.5
Q ss_pred eCChHHHHHHHHHHhCCCccHHHHHHH-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCCCCCCCcchhhhhhcchhh
Q psy2416 167 VKHPHKIIVTYLQVLGCEKNQKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLFHVLESD 245 (405)
Q Consensus 167 ~~~P~~~l~~~l~~l~~~~~~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~~~~~~~~~ 245 (405)
....+..|..++..|++. +.+...| .+...++...+.-......|||||||+|++..+.+..- .+....++++..+
T Consensus 126 L~~a~~~I~~~~~~L~Lp--~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl-~eI~~~~~v~~ke 202 (345)
T 4bbr_M 126 VQAAFAKITMLCDAAELP--KIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTF-KEIQSLIHVKTKE 202 (345)
T ss_dssp TTHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCH-HHHHHHHTCCTTH
T ss_pred HHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccH-HHHHHHhCCCHHH
Confidence 345678889999999986 6788999 88888887777788899999999999999999875432 2566677899999
Q ss_pred HHHHHHHHHHHhcC
Q psy2416 246 IQDVCKRILRLYTR 259 (405)
Q Consensus 246 l~~~~~~il~ly~~ 259 (405)
|..++..|.+.+..
T Consensus 203 igr~~k~l~~~L~l 216 (345)
T 4bbr_M 203 FGKTLNIMKNILRG 216 (345)
T ss_dssp HHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHhCc
Confidence 99999888876653
No 24
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=95.61 E-value=0.022 Score=51.46 Aligned_cols=56 Identities=11% Similarity=-0.029 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccchhhHHHHHHHHHHhhcCC
Q psy2416 56 CELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEA 111 (405)
Q Consensus 56 v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~LA~K~ee~ 111 (405)
..+|..++..++++..+..+|..+++..+....+..+.+..||+||||+|++..+.
T Consensus 135 ~~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~ 190 (235)
T 1zp2_A 135 YTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDEN 190 (235)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcCC
Confidence 35688888889999999999999999998888888999999999999999998654
No 25
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=95.28 E-value=0.062 Score=49.97 Aligned_cols=87 Identities=17% Similarity=0.228 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhCCCccHHHHHHH-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCCCCCCCcchhh------------
Q psy2416 171 HKIIVTYLQVLGCEKNQKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYS------------ 237 (405)
Q Consensus 171 ~~~l~~~l~~l~~~~~~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~------------ 237 (405)
.++|......+++. +++..+| .++.-.+....+-.+.+..||+|||++|+++.+.+.+...+...
T Consensus 47 ~~~I~~v~~~l~L~--~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~~ 124 (285)
T 3rgf_B 47 TNVIQALGEHLKLR--QQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSY 124 (285)
T ss_dssp HHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcccccc
Confidence 35666777777776 6788888 88888777677788999999999999999999886652111111
Q ss_pred ----hhhcchhhHHHHHHHHHHHhcC
Q psy2416 238 ----LFHVLESDIQDVCKRILRLYTR 259 (405)
Q Consensus 238 ----~~~~~~~~l~~~~~~il~ly~~ 259 (405)
.+.++.++|..+-..|++....
T Consensus 125 ~~~~~~~~~~~~Il~~E~~iL~~L~f 150 (285)
T 3rgf_B 125 AFPKEFPYRMNHILECEFYLLELMDC 150 (285)
T ss_dssp TCCSCCCCCHHHHHHHHHHHHHHTTT
T ss_pred cCchhhHHHHHHHHHHHHHHHHHcCC
Confidence 1124567888888888877654
No 26
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=95.01 E-value=0.11 Score=47.90 Aligned_cols=87 Identities=9% Similarity=0.122 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhCCCccHHHHHHH-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCCCCCCCcchhhhh--hcchhhHH
Q psy2416 171 HKIIVTYLQVLGCEKNQKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLF--HVLESDIQ 247 (405)
Q Consensus 171 ~~~l~~~l~~l~~~~~~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~~~--~~~~~~l~ 247 (405)
.++|......+++. ++...+| .+++..+.....-...+..||+|||++|++..+..+|.-.++.... .++.++|.
T Consensus 42 v~wl~~v~~~~~l~--~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~ 119 (269)
T 2b9r_A 42 IDWLVQVQMKFRLL--QETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIR 119 (269)
T ss_dssp HHHHHHHHHHTTCC--HHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHH
T ss_pred HHHHHHHHHHhCCC--HHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHH
Confidence 34566667777775 6788888 8888877666667788999999999999999887555322333333 37889999
Q ss_pred HHHHHHHHHhcC
Q psy2416 248 DVCKRILRLYTR 259 (405)
Q Consensus 248 ~~~~~il~ly~~ 259 (405)
.+-..|++....
T Consensus 120 ~mE~~IL~~L~f 131 (269)
T 2b9r_A 120 QMEMKILRALNF 131 (269)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHcCC
Confidence 998888887654
No 27
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=94.85 E-value=0.055 Score=49.38 Aligned_cols=57 Identities=11% Similarity=0.058 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCCCH----HHHHHHHHHHHHhcccCCccccchhhHHHHHHHHHHhhcCCC
Q psy2416 56 CELIQTAGILLKLPQ----VAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAP 112 (405)
Q Consensus 56 v~~I~~v~~~L~L~~----~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~LA~K~ee~~ 112 (405)
.+||..++..++++. .+...|..+++..+....+..+.+..||+||||+|+++.+..
T Consensus 152 ~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~ 212 (258)
T 2i53_A 152 YQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFE 212 (258)
T ss_dssp HHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCC
Confidence 457888889999886 688899999999988888889999999999999999987653
No 28
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=94.66 E-value=0.13 Score=48.70 Aligned_cols=85 Identities=13% Similarity=0.261 Sum_probs=60.9
Q ss_pred HHHHHHHHHhC--CCccHHHHHHH-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCCCCCCCcchhhhhh-------c
Q psy2416 172 KIIVTYLQVLG--CEKNQKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLFH-------V 241 (405)
Q Consensus 172 ~~l~~~l~~l~--~~~~~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~~~~-------~ 241 (405)
.+|..++..++ +. +.+..+| .++.-.+....+..+.|..||+||||+|+++.+.+.+- .+....+. .
T Consensus 62 ~~I~ev~~~l~~~Lp--~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l-~d~v~~~~~~p~~~~~ 138 (323)
T 1jkw_A 62 KRLLEFCSVFKPAMP--RSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSS-PQFVGNLRESPLGQEK 138 (323)
T ss_dssp HHHHHHHHHCTTTCC--HHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCH-HHHGGGSSSCHHHHHH
T ss_pred HHHHHHHHHHcCCCC--HHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCH-HHHHHHhccChhhhHH
Confidence 45667777777 54 7788899 99998888777889999999999999999999885431 12221121 2
Q ss_pred chhhHHHHHHHHHHHhcC
Q psy2416 242 LESDIQDVCKRILRLYTR 259 (405)
Q Consensus 242 ~~~~l~~~~~~il~ly~~ 259 (405)
+.++|..+-..|++....
T Consensus 139 ~~~~Il~~E~~iL~~L~f 156 (323)
T 1jkw_A 139 ALEQILEYELLLIQQLNF 156 (323)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHCCC
Confidence 346677777777766554
No 29
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=94.61 E-value=0.23 Score=45.25 Aligned_cols=86 Identities=15% Similarity=0.137 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhCCCccHHHHHHH-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCCCCCCCcchhhhh----------
Q psy2416 171 HKIIVTYLQVLGCEKNQKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLF---------- 239 (405)
Q Consensus 171 ~~~l~~~l~~l~~~~~~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~~~---------- 239 (405)
.++|......+++. +++..+| .++.-.+....+-.+.+..||+||||+|+++.+.+.. -.+.....
T Consensus 35 ~~~i~~v~~~l~l~--~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p~~-l~d~~~~~~~~~~~~~~~ 111 (257)
T 2ivx_A 35 ANLIQEMGQRLNVS--QLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARK-LEHVIKVAHACLHPLEPL 111 (257)
T ss_dssp HHHHHHHHHHTTCC--HHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHCTTSCC
T ss_pred HHHHHHHHHHcCCc--HHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCCcC-HHHHHHHHHHHhccCCCC
Confidence 46777888888886 6788899 9988888777788899999999999999999887321 11111111
Q ss_pred --------hcchhhHHHHHHHHHHHhcC
Q psy2416 240 --------HVLESDIQDVCKRILRLYTR 259 (405)
Q Consensus 240 --------~~~~~~l~~~~~~il~ly~~ 259 (405)
....++|..+-..|++....
T Consensus 112 ~~~~~~~y~~~~~~I~~~E~~iL~~L~f 139 (257)
T 2ivx_A 112 LDTKCDAYLQQTRELVILETIMLQTLGF 139 (257)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHccc
Confidence 11266777777777777554
No 30
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=94.43 E-value=0.12 Score=47.12 Aligned_cols=87 Identities=14% Similarity=0.154 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhCCCccHHHHHHH-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCCCCCCCcchhhhh--hcchhhHH
Q psy2416 171 HKIIVTYLQVLGCEKNQKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLF--HVLESDIQ 247 (405)
Q Consensus 171 ~~~l~~~l~~l~~~~~~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~~~--~~~~~~l~ 247 (405)
.++|......+++. ++...+| .+++-.+.....-......||+||+++|+++....+|.-.++.... .++.++|.
T Consensus 55 vdwl~ev~~~~~l~--~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~ 132 (257)
T 1g3n_C 55 GTWMFSVCQEYNLE--PNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELI 132 (257)
T ss_dssp HHHHHHHHHHTTCC--HHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHH
T ss_pred HHHHHHHHHHhCCC--ccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHH
Confidence 34556666667765 6788899 8888877666666778899999999999999887554322332222 37888999
Q ss_pred HHHHHHHHHhcC
Q psy2416 248 DVCKRILRLYTR 259 (405)
Q Consensus 248 ~~~~~il~ly~~ 259 (405)
.+-..|++....
T Consensus 133 ~mE~~iL~~L~~ 144 (257)
T 1g3n_C 133 DQEKELLEKLAW 144 (257)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHCCC
Confidence 988888887654
No 31
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=94.21 E-value=0.16 Score=46.25 Aligned_cols=86 Identities=10% Similarity=0.117 Sum_probs=62.7
Q ss_pred HHHHHHHHHhCCCccHHHHHHH-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCCCCCCCcchhhhh--hcchhhHHH
Q psy2416 172 KIIVTYLQVLGCEKNQKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLF--HVLESDIQD 248 (405)
Q Consensus 172 ~~l~~~l~~l~~~~~~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~~~--~~~~~~l~~ 248 (405)
++|......+++. ++...+| .+++-.+.....-......||+||+++|+++.....|.-.++.... .++.++|..
T Consensus 57 dwl~~v~~~~~l~--~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~ 134 (254)
T 2f2c_A 57 TWMHLLCESFELD--KSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELIN 134 (254)
T ss_dssp HHHHHHHHHTTCC--TTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHH
T ss_pred HHHHHHHHHHCCC--chHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHH
Confidence 4566666677765 5678888 8888877666667788999999999999999876544322222222 378899999
Q ss_pred HHHHHHHHhcC
Q psy2416 249 VCKRILRLYTR 259 (405)
Q Consensus 249 ~~~~il~ly~~ 259 (405)
+-..|++....
T Consensus 135 mE~~IL~~L~~ 145 (254)
T 2f2c_A 135 QEKDILEALKW 145 (254)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHCCC
Confidence 88888887654
No 32
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=94.13 E-value=0.093 Score=48.03 Aligned_cols=86 Identities=15% Similarity=0.206 Sum_probs=58.6
Q ss_pred HHHHHHHHHhCCCccHHHHHHH-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCCCCCCCcchhhhh--hcchhhHHH
Q psy2416 172 KIIVTYLQVLGCEKNQKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLF--HVLESDIQD 248 (405)
Q Consensus 172 ~~l~~~l~~l~~~~~~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~~~--~~~~~~l~~ 248 (405)
++|......+++. ++...+| .+++..+.....-......||+|||++|+++.+..+|.-.++.... .++.++|..
T Consensus 44 dwl~~v~~~~~l~--~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~ 121 (260)
T 2cch_B 44 DWLVEVGEEYKLQ--NETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLR 121 (260)
T ss_dssp HHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHH
T ss_pred HHHHHHHHHhCCC--HHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHH
Confidence 4555666666665 6677778 7777655444445567889999999999999987544322333222 377888888
Q ss_pred HHHHHHHHhcC
Q psy2416 249 VCKRILRLYTR 259 (405)
Q Consensus 249 ~~~~il~ly~~ 259 (405)
+-..|++....
T Consensus 122 mE~~iL~~L~~ 132 (260)
T 2cch_B 122 MEHLVLKVLTF 132 (260)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHcCC
Confidence 88888776553
No 33
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=94.03 E-value=0.14 Score=48.10 Aligned_cols=86 Identities=14% Similarity=0.166 Sum_probs=61.8
Q ss_pred HHHHHHHHHhCCCccHHHHHHH-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCCCCCCCcchhhhh--hcchhhHHH
Q psy2416 172 KIIVTYLQVLGCEKNQKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLF--HVLESDIQD 248 (405)
Q Consensus 172 ~~l~~~l~~l~~~~~~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~~~--~~~~~~l~~ 248 (405)
++|......+++. ++...+| .+++-.+....+-......||++|+++|+++.....|.-.++.... .++.++|..
T Consensus 76 dwl~ev~~~~~l~--~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~ 153 (306)
T 3g33_B 76 YWMLEVCEEQRCE--EEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRD 153 (306)
T ss_dssp HHHHHHHHHTTCC--TTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHH
T ss_pred HHHHHHHHHhCCc--HhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHH
Confidence 4555666667765 5677788 8887766555567788999999999999999876554433333333 377888988
Q ss_pred HHHHHHHHhcC
Q psy2416 249 VCKRILRLYTR 259 (405)
Q Consensus 249 ~~~~il~ly~~ 259 (405)
+-..|++.+..
T Consensus 154 mE~~IL~~L~f 164 (306)
T 3g33_B 154 WEVLVLGKLKW 164 (306)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHcCC
Confidence 88888877554
No 34
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=94.02 E-value=0.16 Score=48.89 Aligned_cols=56 Identities=23% Similarity=0.352 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhCCCccHHHHHHH-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCCC
Q psy2416 171 HKIIVTYLQVLGCEKNQKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIP 228 (405)
Q Consensus 171 ~~~l~~~l~~l~~~~~~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~ 228 (405)
.++|..+...+++. +++..+| .++.-.+....+-.+.+..||+||||+|+++.+.+
T Consensus 42 v~wI~ev~~~l~L~--~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p 98 (358)
T 2pk2_A 42 ANLLQDMGQRLNVS--QLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQP 98 (358)
T ss_dssp HHHHHHHHTTTTCC--HHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCC
Confidence 45666666666765 7788899 99888887777889999999999999999998874
No 35
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=93.90 E-value=0.22 Score=45.79 Aligned_cols=86 Identities=9% Similarity=0.204 Sum_probs=60.9
Q ss_pred HHHHHHHHHhCCCccHHHHHHH-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCCCCCCCcchhhhh--hcchhhHHH
Q psy2416 172 KIIVTYLQVLGCEKNQKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLF--HVLESDIQD 248 (405)
Q Consensus 172 ~~l~~~l~~l~~~~~~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~~~--~~~~~~l~~ 248 (405)
++|......+++. ++...+| .+++-.+.....-......||+|||++|+++.+...+.-.++.... .++.++|..
T Consensus 62 ~wl~~v~~~~~l~--~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~ 139 (271)
T 2w96_A 62 TWMLEVCEEQKCE--EEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQ 139 (271)
T ss_dssp HHHHHHHHHTTCC--TTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHH
T ss_pred HHHHHHHHHHCCc--hhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHH
Confidence 4455555666665 5667888 8888877666667788999999999999999887333222222222 378889998
Q ss_pred HHHHHHHHhcC
Q psy2416 249 VCKRILRLYTR 259 (405)
Q Consensus 249 ~~~~il~ly~~ 259 (405)
+-..|++....
T Consensus 140 mE~~IL~~L~~ 150 (271)
T 2w96_A 140 MELLLVNKLKW 150 (271)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHCCC
Confidence 88888877654
No 36
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=93.44 E-value=0.21 Score=46.29 Aligned_cols=86 Identities=13% Similarity=0.182 Sum_probs=61.1
Q ss_pred HHHHHHHHHhCCCccHHHHHHH-HHHHHhcCC-cccccCChHHHHHHHHHHHHHHcCCCCCCCcchhhhh--hcchhhHH
Q psy2416 172 KIIVTYLQVLGCEKNQKLMQLA-NYMNDSLRT-DVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLF--HVLESDIQ 247 (405)
Q Consensus 172 ~~l~~~l~~l~~~~~~~l~~~A-~~l~d~~~t-~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~~~--~~~~~~l~ 247 (405)
++|......+++. ++...+| .+++..+.. ...-......||+|||++|+++.+..+|.-.++.... .++.++|.
T Consensus 55 ~wl~~v~~~~~l~--~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~ 132 (283)
T 1w98_B 55 DWLMEVCEVYKLH--RETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEIL 132 (283)
T ss_dssp HHHHHHHHHTTCB--HHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHH
T ss_pred HHHHHHHHHhCCC--ccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHH
Confidence 4455566666764 6778888 888776643 3456788999999999999999987555322333222 37788999
Q ss_pred HHHHHHHHHhcC
Q psy2416 248 DVCKRILRLYTR 259 (405)
Q Consensus 248 ~~~~~il~ly~~ 259 (405)
.+-..|++....
T Consensus 133 ~mE~~IL~~L~~ 144 (283)
T 1w98_B 133 TMELMIMKALKW 144 (283)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHcCC
Confidence 988888877654
No 37
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=91.55 E-value=0.78 Score=39.70 Aligned_cols=66 Identities=15% Similarity=0.170 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcccC---CccccchhhHHHHHHHHHHhhcCCCcCHHHHHH
Q psy2416 55 GCELIQTAGILLKLPQVAMATGQVLFQRFYYSK---SFVRHPMETTAMGCVCLASKIEEAPRRIRDVIN 120 (405)
Q Consensus 55 ~v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~---s~~~~~~~lva~acl~LA~K~ee~~~~l~~i~~ 120 (405)
+...|..+.++-++|..++.-|+.+-..|.-.. ...-..++.|++||+.||+--...|.++.++..
T Consensus 15 M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~r~ 83 (260)
T 3h4c_A 15 MLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEVRC 83 (260)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHHHH
Confidence 445678999999999999999999999997642 333456889999999999998888999888753
No 38
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=91.09 E-value=0.46 Score=43.23 Aligned_cols=86 Identities=7% Similarity=0.027 Sum_probs=59.9
Q ss_pred HHHHHHHHHhCCCccHHHHHHH-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCCCCCCCcchh--hhhhcchhhHHH
Q psy2416 172 KIIVTYLQVLGCEKNQKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWY--SLFHVLESDIQD 248 (405)
Q Consensus 172 ~~l~~~l~~l~~~~~~~l~~~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~--~~~~~~~~~l~~ 248 (405)
++|......+++. ++...+| ++++-.+.....-......||++|+++|+++.....|.-..+. ....++.++|..
T Consensus 54 dWl~ev~~~~~l~--~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~ 131 (252)
T 1f5q_B 54 TWMFCVCKDLRQD--NNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLT 131 (252)
T ss_dssp HHHHHHHHHTTCC--TTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHH
T ss_pred HHHHHHHHHcCCC--hHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHH
Confidence 4455566666665 5677888 8887765444445667899999999999999887554322222 222478899999
Q ss_pred HHHHHHHHhcC
Q psy2416 249 VCKRILRLYTR 259 (405)
Q Consensus 249 ~~~~il~ly~~ 259 (405)
+-..|++...-
T Consensus 132 mE~~IL~~L~w 142 (252)
T 1f5q_B 132 LEVKSLDTLSW 142 (252)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHCCC
Confidence 88888887654
No 39
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=91.06 E-value=1.3 Score=33.63 Aligned_cols=61 Identities=10% Similarity=0.060 Sum_probs=44.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcccCC-----ccccchhhHHHHHHHHHHhhcCCCcCHHHHHH
Q psy2416 59 IQTAGILLKLPQVAMATGQVLFQRFYYSKS-----FVRHPMETTAMGCVCLASKIEEAPRRIRDVIN 120 (405)
Q Consensus 59 I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s-----~~~~~~~lva~acl~LA~K~ee~~~~l~~i~~ 120 (405)
|.++|..|+++. ++..|-.++++|-..-. -.++..-.+++||+|.|||.......-..++.
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK~KL~~ 71 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVA 71 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhccccccccHHHHHHHHHHHHHHccCCCHHHHHH
Confidence 678999999987 77788899999864311 12344556788999999999887655444443
No 40
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=89.35 E-value=1.4 Score=33.46 Aligned_cols=80 Identities=13% Similarity=0.213 Sum_probs=57.6
Q ss_pred HHHHHHhCCCccHHHHHHH-HHHHHhcC--C---cccccCChHHHHHHHHHHHHHHcCCCCCCCcchhhhhhcchhhHHH
Q psy2416 175 VTYLQVLGCEKNQKLMQLA-NYMNDSLR--T---DVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLFHVLESDIQD 248 (405)
Q Consensus 175 ~~~l~~l~~~~~~~l~~~A-~~l~d~~~--t---~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~~~~~~~~~l~~ 248 (405)
..++-.+|.. ++...| .+|+..-. . ...+.++-.+-++||+|.|++.+++.++.. ...+..|+.+.+...
T Consensus 7 ~dLcVqfgc~---e~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK~-KL~~~s~lk~~~f~~ 82 (95)
T 3m03_A 7 RDLAVQFSCI---EAVNMASKILKSYESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKN-KMVATSGVKKAIFDR 82 (95)
T ss_dssp HHHHHHHTCG---GGHHHHHHHHHHHHTTSCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCHH-HHHHTTCBCHHHHHH
T ss_pred HHHHHHhCCH---HHHHHHHHHHHHHHHHhHHHhhccccccccHHHHHHHHHHHHHHccCCCHH-HHHHHHCCCHHHHHH
Confidence 3455556664 366667 66654221 1 235677889999999999999999987643 466777899999999
Q ss_pred HHHHHHHHhc
Q psy2416 249 VCKRILRLYT 258 (405)
Q Consensus 249 ~~~~il~ly~ 258 (405)
++..+..+..
T Consensus 83 l~~~~e~~~~ 92 (95)
T 3m03_A 83 LCKQLEKIGQ 92 (95)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9988877654
No 41
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=87.14 E-value=1.8 Score=42.05 Aligned_cols=68 Identities=10% Similarity=0.055 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhccc--CCccccchhhHHHHHHHHHHhhcCCCcCHHHHHHHH
Q psy2416 55 GCELIQTAGILLKLPQ-VAMATGQVLFQRFYYS--KSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVF 122 (405)
Q Consensus 55 ~v~~I~~v~~~L~L~~-~t~~~A~~~~~Rf~~~--~s~~~~~~~lva~acl~LA~K~ee~~~~l~~i~~~~ 122 (405)
+.-=|.++|..|+++. ++...-++.|+..+.. .-+.+.++.-+.+.|||+-||+.....+..+|+..|
T Consensus 282 Aa~Rl~~LC~~L~~~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~~Y 352 (411)
T 4ell_A 282 AYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAY 352 (411)
T ss_dssp HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Confidence 4455889999998865 5556667777766543 456777888999999999999998889999999876
No 42
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=86.79 E-value=1.9 Score=40.85 Aligned_cols=68 Identities=10% Similarity=0.041 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhcc--cCCccccchhhHHHHHHHHHHhhcCCCcCHHHHHHHH
Q psy2416 55 GCELIQTAGILLKLPQ-VAMATGQVLFQRFYY--SKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVF 122 (405)
Q Consensus 55 ~v~~I~~v~~~L~L~~-~t~~~A~~~~~Rf~~--~~s~~~~~~~lva~acl~LA~K~ee~~~~l~~i~~~~ 122 (405)
+..=|.++|..|+++. .+....+++|+-.+. ..-+.+.++.-+.+.|+|+-||+.....+..+|+..+
T Consensus 218 a~~Rl~~LC~~L~~~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~tF~~Ii~~Y 288 (347)
T 2r7g_A 218 AYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAY 288 (347)
T ss_dssp HHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 3445899999998765 566667777777765 3456778899999999999999998888999999875
No 43
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=85.63 E-value=2.1 Score=39.86 Aligned_cols=64 Identities=9% Similarity=0.057 Sum_probs=45.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcccC---CccccchhhHHHHHHHHHHhh-cCCCcCHHHHHHHH
Q psy2416 59 IQTAGILLKLPQVAMATGQVLFQRFYYSK---SFVRHPMETTAMGCVCLASKI-EEAPRRIRDVINVF 122 (405)
Q Consensus 59 I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~---s~~~~~~~lva~acl~LA~K~-ee~~~~l~~i~~~~ 122 (405)
..++|..|+|+..|...|+.+|+..-..- +-...+.+...+||||+||.. ++...++-+++..+
T Consensus 6 F~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~acLY~a~~~~~~n~vsLt~LLr~~ 73 (304)
T 2qdj_A 6 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNI 73 (304)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHTCCCSCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccchHHHHHHhHHHHhhccCCCcCcHHHHHHHc
Confidence 45789999999999999999999976631 112234555566779999985 44577888887765
No 44
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=85.56 E-value=3.7 Score=37.89 Aligned_cols=90 Identities=8% Similarity=0.060 Sum_probs=66.5
Q ss_pred ChHHHHHHHHHHhCCCccHHHHHHH-HHHHHhcC--Ccc-cccCChHHHHHHHHHHHHHHcCCCCCCCcchhhhhhcchh
Q psy2416 169 HPHKIIVTYLQVLGCEKNQKLMQLA-NYMNDSLR--TDV-FVRYDPETIASACIYLTARKLRIPLPRNPAWYSLFHVLES 244 (405)
Q Consensus 169 ~P~~~l~~~l~~l~~~~~~~l~~~A-~~l~d~~~--t~~-~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~~~~~~~~ 244 (405)
.-++||.++++...+. ..+.-.| .+++-... ..+ .-....+-|-++||.+|.++++....+...|....|++..
T Consensus 76 SI~~Yl~RI~k~t~ls--~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~ 153 (293)
T 2pmi_B 76 SIFNYFIRLTKFSSLE--HCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCH 153 (293)
T ss_dssp CHHHHHHHHHHTTTCC--HHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHH
T ss_pred cHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHH
Confidence 3478888888777775 4555556 55554332 122 2356789999999999999998766666678888899999
Q ss_pred hHHHHHHHHHHHhcCC
Q psy2416 245 DIQDVCKRILRLYTRP 260 (405)
Q Consensus 245 ~l~~~~~~il~ly~~~ 260 (405)
+|..+-.++|.+....
T Consensus 154 ELN~LE~eFL~lLdf~ 169 (293)
T 2pmi_B 154 ELNILENDFLKRVNYR 169 (293)
T ss_dssp HHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHcCCc
Confidence 9999999999886543
No 45
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=81.95 E-value=4.6 Score=41.48 Aligned_cols=70 Identities=10% Similarity=0.063 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhccc--CCccccchhhHHHHHHHHHHhhcCCCcCHHHHHHHHH
Q psy2416 54 IGCELIQTAGILLKLP-QVAMATGQVLFQRFYYS--KSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFH 123 (405)
Q Consensus 54 ~~v~~I~~v~~~L~L~-~~t~~~A~~~~~Rf~~~--~s~~~~~~~lva~acl~LA~K~ee~~~~l~~i~~~~~ 123 (405)
.+..=|.++|..|+++ +.+....+++|+..+.. .-+.+.++.-+.+.|||.-||+.....+..+|+..+.
T Consensus 526 LAa~Rl~~LC~~L~~~~~~i~~~IWt~fe~~l~~~t~L~~dRHLDQiilCsiY~icKv~~~~ltFk~Ii~~Yr 598 (656)
T 4elj_A 526 LAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYK 598 (656)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhccCCcCHHHHHHHHH
Confidence 3456689999999877 45666788888877653 4567778999999999999999998899999998763
No 46
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=74.06 E-value=4.5 Score=39.68 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=10.8
Q ss_pred cccccCChHHHHHHHHH
Q psy2416 203 DVFVRYDPETIASACIY 219 (405)
Q Consensus 203 ~~~l~~~Ps~IAaA~i~ 219 (405)
..||.|.-..-|.+||.
T Consensus 146 ~aFV~F~~~e~A~~Ai~ 162 (437)
T 3pgw_S 146 YAFIEYEHERDMHSAYK 162 (437)
T ss_pred eEEEeeccHHHHHHHHH
Confidence 45677766666666664
No 47
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=69.19 E-value=11 Score=38.87 Aligned_cols=64 Identities=8% Similarity=0.012 Sum_probs=44.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhccc-----CCccccchhhHHHHHHHHHHhhcCCCcCHHHHHHHH
Q psy2416 58 LIQTAGILLKLPQVAMATGQVLFQRFYYS-----KSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVF 122 (405)
Q Consensus 58 ~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~-----~s~~~~~~~lva~acl~LA~K~ee~~~~l~~i~~~~ 122 (405)
...++|..|+++..|...|+..|...-.. .++.+...+..|+ .+|.||.+++.-.++-.++..+
T Consensus 7 ~f~~lC~~Ln~d~~~~~~Aw~~~~~~~~~~~~l~~tleg~~~~W~aC-~ly~~~~~~gn~vsLt~lLr~~ 75 (656)
T 4elj_A 7 DFTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGIC-IFIAAVDLDEMSFTFTELQKNI 75 (656)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHCSCC-----CCHHHHHHH-HHHHHHHTTCCCSCHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhccccccCCcccchHHhhhh-hheeeeeccCCeeeHHHHHHHh
Confidence 34688999999999999999999988742 2333444444333 3666666788888888887765
No 48
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=48.28 E-value=6.8 Score=30.31 Aligned_cols=9 Identities=22% Similarity=0.084 Sum_probs=4.2
Q ss_pred cchhhHHHH
Q psy2416 241 VLESDIQDV 249 (405)
Q Consensus 241 ~~~~~l~~~ 249 (405)
+++++|.++
T Consensus 28 ~t~~~l~~~ 36 (115)
T 3beg_B 28 GSWQDLKDH 36 (115)
T ss_dssp CCTTHHHHH
T ss_pred CCHHHHHHH
Confidence 445554443
No 49
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=47.30 E-value=48 Score=28.68 Aligned_cols=23 Identities=30% Similarity=0.644 Sum_probs=21.0
Q ss_pred CChHHHHHHHHHHHHHHcCCCCC
Q psy2416 208 YDPETIASACIYLTARKLRIPLP 230 (405)
Q Consensus 208 ~~Ps~IAaA~i~lA~~~~~~~l~ 230 (405)
-.|..+||||+.+|+...+.++|
T Consensus 55 E~q~dVAAAc~miAae~~~~Pip 77 (260)
T 3h4c_A 55 ERQPDVAAACLMIAAEEAQQPLP 77 (260)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCC
T ss_pred cccHHHHHHHHHHHHHHcCCCcc
Confidence 46889999999999999999987
No 50
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.15 E-value=1.2e+02 Score=22.02 Aligned_cols=54 Identities=6% Similarity=0.078 Sum_probs=37.1
Q ss_pred cchhhhhh----cchhhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHhhhh
Q psy2416 233 PAWYSLFH----VLESDIQDVCKRILRLYTRPKANTDELERQIEVIKKEYQLSKDRKV 286 (405)
Q Consensus 233 ~~w~~~~~----~~~~~l~~~~~~il~ly~~~~~~~~~l~~~l~~~r~~~~~~k~k~~ 286 (405)
..+|++|| .+.++|+..+..+...|-..+...+..++.+..+.+.|.......+
T Consensus 27 ~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~ 84 (90)
T 2ys8_A 27 KDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIK 84 (90)
T ss_dssp SSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCccc
Confidence 36888886 4688899999888877765443333455677777777777665544
No 51
>1unl_D Cyclin-dependent kinase 5 activator 1; inhibitor, ATP-analogue, neurodegen diseases; HET: RRC; 2.2A {Homo sapiens} SCOP: a.74.1.1 PDB: 1unh_D* 1ung_D*
Probab=35.57 E-value=48 Score=27.81 Aligned_cols=21 Identities=14% Similarity=0.357 Sum_probs=14.8
Q ss_pred cccchhhHHHHHHHHHHhhcC
Q psy2416 90 VRHPMETTAMGCVCLASKIEE 110 (405)
Q Consensus 90 ~~~~~~lva~acl~LA~K~ee 110 (405)
...+++.+.+||||||=-|-.
T Consensus 119 te~eLqa~vLTCLYlsYSYmG 139 (208)
T 1unl_D 119 SDHELQAVLLTCLYLSYSYMG 139 (208)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHhhC
Confidence 345677888888888776643
No 52
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=34.97 E-value=29 Score=19.39 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHcCcc
Q psy2416 148 TQVIKAERRVLKELGFC 164 (405)
Q Consensus 148 ~~i~~~E~~iL~~L~F~ 164 (405)
++|.++|..|-++|.||
T Consensus 13 qeikelennirkalsfd 29 (31)
T 2wh0_Q 13 QEIKELENNIRKALSFD 29 (31)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 47888999999999997
No 53
>3o0g_D Cyclin-dependent kinase 5 activator 1; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: a.74.1.1 PDB: 1h4l_D
Probab=33.38 E-value=81 Score=25.20 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=17.5
Q ss_pred ccccchhhHHHHHHHHHHhhcC
Q psy2416 89 FVRHPMETTAMGCVCLASKIEE 110 (405)
Q Consensus 89 ~~~~~~~lva~acl~LA~K~ee 110 (405)
-...++|.+.+||||||=-+-.
T Consensus 73 ~se~eLqa~~lTCLYlsYSYmG 94 (149)
T 3o0g_D 73 GSDHELQAVLLTCLYLSYSYMG 94 (149)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHhc
Confidence 3456789999999999987744
No 54
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=26.42 E-value=3.1e+02 Score=25.65 Aligned_cols=84 Identities=14% Similarity=0.241 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHHHHHcCcceeeCChHHH----------------------------HHHHHHHhCCCccHHHHHHH-H
Q psy2416 144 MTLKTQVIKAERRVLKELGFCVHVKHPHKI----------------------------IVTYLQVLGCEKNQKLMQLA-N 194 (405)
Q Consensus 144 ~~~~~~i~~~E~~iL~~L~F~l~~~~P~~~----------------------------l~~~l~~l~~~~~~~l~~~A-~ 194 (405)
.++++.+-.+|..||+.|-|.-+-+ -+.. |..+|+.|+... .++...+ .
T Consensus 165 relvkHL~~iEe~iLeslaW~~~S~-L~~~l~~~~~~~g~~~sl~~f~rKvy~La~~Rl~~LC~~L~~~~-~~~~~~iWt 242 (347)
T 2r7g_A 165 REMIKHLERCEHRIMESLAWLSDSP-LFDLIKQSKDREGKSTSLSLFYKKVYRLAYLRLNTLCERLLSEH-PELEHIIWT 242 (347)
T ss_dssp HHHHHHHHHHHHHHHHTGGGSTTCT-HHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHCTTC-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCH-HHHHHHhccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhCCCc-hHHHHHHHH
Confidence 3568889999999999999986642 1111 223344454332 2333333 3
Q ss_pred HHHHhc--CCcccccCChHHHHHHHHHHHHHHcCCCC
Q psy2416 195 YMNDSL--RTDVFVRYDPETIASACIYLTARKLRIPL 229 (405)
Q Consensus 195 ~l~d~~--~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l 229 (405)
++..++ .+.++....-.+|.++|||..+++.+.++
T Consensus 243 ~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~ 279 (347)
T 2r7g_A 243 LFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDL 279 (347)
T ss_dssp HHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCC
Confidence 333322 46888899999999999999999988654
No 55
>2ljx_A Protein E6; metal binding protein; NMR {Human papillomavirus} PDB: 2ljy_A
Probab=22.26 E-value=1.9 Score=31.97 Aligned_cols=54 Identities=13% Similarity=0.031 Sum_probs=39.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhccc------------CCccccchhhHHHHHHHHHHhhcCC
Q psy2416 58 LIQTAGILLKLPQVAMATGQVLFQRFYYS------------KSFVRHPMETTAMGCVCLASKIEEA 111 (405)
Q Consensus 58 ~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~------------~s~~~~~~~lva~acl~LA~K~ee~ 111 (405)
-|.++|+.+++|...+.+.+++-.+++.. -..++.-++.+...|+.+++|+|..
T Consensus 13 tl~~Lc~~~~i~~~dl~L~CvFC~~~Lt~~E~~~F~~k~L~lVwR~~~pya~C~~Cl~~~a~~e~~ 78 (84)
T 2ljx_A 13 KLPQLCTELQTTIHDIILECVYCKQQLLRREVYDFARRDLCIVYRDGNPYAVCDKCLKFYSKISEY 78 (84)
T ss_dssp SHHHHHHHTTSCTTTCCCEETTTCCBCCHHHHHHHHHTTCCCEEETTEEEECCHHHHHHHTTCSSC
T ss_pred cHHHHHHHHCCCHHHeEeEeeecCCcCCHHHHHHHhhcCeEEEEECCEeeEEcHHHHHHHHHHHHH
Confidence 36788999998877776666655555542 1224556788899999999999874
Done!