RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2416
(405 letters)
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 143
Score = 127 bits (321), Expect = 2e-36
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 3/146 (2%)
Query: 22 SLSNCLLPEEKLNPTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQ 81
+ S E+L TPS G++ + E R LIQ G L + Q+ + T V
Sbjct: 1 ASSRWFFTREQLENTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMH 60
Query: 82 RFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLTT 141
RFY SF + + + LA+K+EE R++ VI V H + T
Sbjct: 61 RFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPLEPLLDTKC---D 117
Query: 142 QYMTLKTQVIKAERRVLKELGFCVHV 167
Y+ +++ E +L+ LGF + +
Sbjct: 118 AYLQQTRELVILETIMLQTLGFEITI 143
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId:
9606]}
Length = 144
Score = 125 bits (316), Expect = 1e-35
Identities = 43/144 (29%), Positives = 63/144 (43%), Gaps = 8/144 (5%)
Query: 24 SNCLLPEEKLNPTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRF 83
++ L TPS L+GLDP E R G I G L L +ATG + F RF
Sbjct: 9 PCWYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRF 68
Query: 84 YYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLTTQY 143
Y SF + P T C+ LA K+EE P++ +D+I + +
Sbjct: 69 YMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLN--------DVQFGQFG 120
Query: 144 MTLKTQVIKAERRVLKELGFCVHV 167
K +V+ ER +L+ + F + V
Sbjct: 121 DDPKEEVMVLERILLQTIKFDLQV 144
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId:
9606]}
Length = 110
Score = 108 bits (270), Expect = 2e-29
Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 11/108 (10%)
Query: 168 KHPHKIIVTYLQVLGCEKN--QKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARK 224
+HP++ ++ Y + L +KN QKL+Q+A ++NDSL T + ++++PE IA A +YL R
Sbjct: 1 EHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRL 60
Query: 225 LRIPLPRN------PAWYSLF--HVLESDIQDVCKRILRLYTRPKANT 264
+ + W+ F V ++D+C +IL LY++ K
Sbjct: 61 CKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQGKQQM 108
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 97.2 bits (242), Expect = 3e-25
Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 9/107 (8%)
Query: 169 HPHKIIVTYLQVLGCEKNQKLMQLA-NYMNDSLR-TDVFVRYDPETIASACIYLTARKLR 226
HPH +V Q++ K+ L Q + +SL T ++Y P IA CI+L +
Sbjct: 2 HPHTDVVKCTQLVRASKD--LAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSN 59
Query: 227 IPLPRNPA---WYSLFH--VLESDIQDVCKRILRLYTRPKANTDELE 268
+P + W+ V + ++ L++ + ++
Sbjct: 60 WEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQILEKTPNRLKKIR 106
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 151
Score = 95.1 bits (236), Expect = 5e-24
Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 16/140 (11%)
Query: 30 EEKLNPTPSMLDGLDPEVETDLRIIGCELIQTAGILLK--LPQVAMATGQVLFQRFYYSK 87
P+ L+P E L + + + K +P+ + T + F+RFY +
Sbjct: 25 VANGKVLPNDPVFLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNN 84
Query: 88 SFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLK 147
S + + + C LA K++E +
Sbjct: 85 SVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESP--------------LGQEKAL 130
Query: 148 TQVIKAERRVLKELGFCVHV 167
Q+++ E ++++L F + V
Sbjct: 131 EQILEYELLLIQQLNFHLIV 150
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 126
Score = 93.0 bits (231), Expect = 1e-23
Identities = 18/121 (14%), Positives = 45/121 (37%), Gaps = 6/121 (4%)
Query: 169 HPHK-----IIVTYLQVLGCEKNQKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTA 222
+P++ +I + E + L + A +++N TD ++ Y P IA I +A
Sbjct: 1 NPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSA 60
Query: 223 RKLRIPLPRNPAWYSLFHVLESDIQDVCKRILRLYTRPKANTDELERQIEVIKKEYQLSK 282
+ I + + + + + + + + K ++ V+K++
Sbjct: 61 SRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNLVKKYEPPRSEEVAVLKQKLDRCH 120
Query: 283 D 283
Sbjct: 121 S 121
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's
sarcoma-associated herpesvirus [TaxId: 37296]}
Length = 132
Score = 46.8 bits (111), Expect = 3e-07
Identities = 20/142 (14%), Positives = 44/142 (30%), Gaps = 20/142 (14%)
Query: 23 LSNCLLPEEKLNPTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQR 82
N L E + + S+ + + +R + + + L +A L R
Sbjct: 7 FYNILEIEPRFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDR 66
Query: 83 FYYSKSFVRHPMETTAMGCVCLASKIEEA-PRRIRDVINVFHHIRQVMNQKSITPMLLTT 141
K + + T C+ +ASK+ P +
Sbjct: 67 LLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYA-------------------A 107
Query: 142 QYMTLKTQVIKAERRVLKELGF 163
+ ++I E+ +L++L +
Sbjct: 108 ADSFSRQELIDQEKELLEKLAW 129
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri
[TaxId: 10381]}
Length = 127
Score = 42.2 bits (99), Expect = 1e-05
Identities = 24/140 (17%), Positives = 45/140 (32%), Gaps = 20/140 (14%)
Query: 25 NCLLPEEKLNPTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFY 84
N L E L P + L + EV D R I + +L + + R+
Sbjct: 4 NNLKLRELLLPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYL 63
Query: 85 YSKSFVRHPMETTAMGCVCLASKIEEA-PRRIRDVINVFHHIRQVMNQKSITPMLLTTQY 143
K + ++ CV + SKI P + + + +
Sbjct: 64 CKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYL-------------------SCD 104
Query: 144 MTLKTQVIKAERRVLKELGF 163
++I E+ +L+ L +
Sbjct: 105 CFTNLELINQEKDILEALKW 124
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68
[TaxId: 33708]}
Length = 141
Score = 40.3 bits (94), Expect = 7e-05
Identities = 16/138 (11%), Positives = 38/138 (27%), Gaps = 20/138 (14%)
Query: 30 EEKLNPTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSF 89
E+ + + +D + R + + L+ L + S
Sbjct: 22 SEREHDARMVGVNVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRI 81
Query: 90 VRHPMETTAMGCVCLASKIEEA-PRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKT 148
R ++TA + +A K+ P + + + T
Sbjct: 82 DRENYQSTAAVALHIAGKVRAYMPIKATQLAYL-------------------CGGATTAD 122
Query: 149 QVIKAERRVLKELGFCVH 166
+++ E + L L +
Sbjct: 123 KLLTLEVKSLDTLSWVAD 140
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId:
9913]}
Length = 128
Score = 39.9 bits (93), Expect = 9e-05
Identities = 32/134 (23%), Positives = 47/134 (35%), Gaps = 19/134 (14%)
Query: 30 EEKLNPTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSF 89
E K P + P++ +R I + + G KL + RF S S
Sbjct: 10 EVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSV 68
Query: 90 VRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQ 149
+R ++ + LASK E + +V IT T K Q
Sbjct: 69 LRGKLQLVGTAAMLLASKFE------------EIYPPEVAEFVYITDDTYT------KKQ 110
Query: 150 VIKAERRVLKELGF 163
V++ E VLK L F
Sbjct: 111 VLRMEHLVLKVLTF 124
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId:
9913]}
Length = 124
Score = 38.7 bits (90), Expect = 2e-04
Identities = 18/103 (17%), Positives = 39/103 (37%), Gaps = 9/103 (8%)
Query: 186 NQKLMQLANYMNDS--LRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLFHVLE 243
N K+ LA ++ + + D +++Y P IA A +L A +
Sbjct: 18 NCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHL-ALYTVTGQSWPESLIRKTGYTL 76
Query: 244 SDIQDVCKRILRLYTRPKANTDELERQIEVIKKEYQLSKDRKV 286
++ + + Y + + + I+++Y+ SK V
Sbjct: 77 ESLKPCLMDLHQTYLKAP------QHAQQSIREKYKNSKYHGV 113
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 140
Score = 38.8 bits (90), Expect = 2e-04
Identities = 21/136 (15%), Positives = 48/136 (35%), Gaps = 22/136 (16%)
Query: 30 EEKLNPTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSF 89
E+ L+ P ++ +R I + + + KL + Q F R+ ++
Sbjct: 22 EKTYLRDQHFLEQ-HPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQEN 80
Query: 90 VRHPM-ETTAMGCVCLASKIEEA-PRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLK 147
V + + + + +A+K+EE P ++ V T
Sbjct: 81 VVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYV-------------------TDGACSG 121
Query: 148 TQVIKAERRVLKELGF 163
+++ E ++K L +
Sbjct: 122 DEILTMELMIMKALKW 137
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB),
core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Length = 98
Score = 31.8 bits (72), Expect = 0.037
Identities = 11/65 (16%), Positives = 25/65 (38%)
Query: 59 IQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDV 118
+ LKLP+ L++ +E+ CV A ++ + PR + ++
Sbjct: 9 LDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEI 68
Query: 119 INVFH 123
++
Sbjct: 69 ADIAR 73
>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium
[TaxId: 90371]}
Length = 376
Score = 32.3 bits (72), Expect = 0.092
Identities = 15/187 (8%), Positives = 39/187 (20%), Gaps = 8/187 (4%)
Query: 91 RHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQV 150
++ R+ + K
Sbjct: 194 NPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDA 253
Query: 151 IKAERRVLKELGFCVHVKHPHKIIVTYLQVLGCEKNQKLMQLANYMNDSLRTDVFVRYDP 210
+ A R + P + + + ++++ R +
Sbjct: 254 LNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKT 313
Query: 211 ETIASACIYLTARKLRIPLPRNPAWYSLFHVLESDI-QDVCKRILRLYTRPKANTDELER 269
+ I + + + F L + +RI L P + +R
Sbjct: 314 KGIGTGLHF-------RAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDR 366
Query: 270 QIEVIKK 276
I + +
Sbjct: 367 VITALHQ 373
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 28.7 bits (64), Expect = 0.31
Identities = 16/67 (23%), Positives = 29/67 (43%)
Query: 57 ELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIR 116
+ I T + LP+ + LF++ Y KS + A C+ +A + E PR +
Sbjct: 7 KEITTMADRINLPRNKVDRTNNLFRQAYEQKSLKGRANDAIASACLYIACRQEGVPRTFK 66
Query: 117 DVINVFH 123
++ V
Sbjct: 67 EICAVSR 73
>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis
protein C {Helicobacter pylori [TaxId: 210]}
Length = 371
Score = 29.4 bits (64), Expect = 0.79
Identities = 7/54 (12%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 227 IPLPRNPAWYSLFHVLESDI-QDVCKRILRLYTRPKANTDELERQIEVIKKEYQ 279
P+ + + LF+ +D + L N + ++ + K ++
Sbjct: 316 KPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFE 369
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 27.5 bits (61), Expect = 1.4
Identities = 7/58 (12%), Positives = 20/58 (34%)
Query: 66 LKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFH 123
L LP+ + ++ + A + +AS+ R +++ ++
Sbjct: 15 LCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAG 72
>d1ks9a1 a.100.1.7 (A:168-291) Ketopantoate reductase PanE
{Escherichia coli [TaxId: 562]}
Length = 124
Score = 27.0 bits (59), Expect = 2.0
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 188 KLMQLANYMNDSLRTDVFVRYDPE--TIASACIYLTARKLRIPLPRNPAWYSLFHVLESD 245
+++ S+ D+ E I + AR I +P N + + ES+
Sbjct: 66 QVIDATAENISSMLQDIRALRHTEIDYINGFLLRR-ARAHGIAVPENTRLFEMVKRKESE 124
>d1eswa_ c.1.8.1 (A:) Amylomaltase MalQ {Thermus aquaticus [TaxId:
271]}
Length = 500
Score = 27.3 bits (60), Expect = 3.8
Identities = 6/15 (40%), Positives = 6/15 (40%)
Query: 384 TPPSPDRSPYSSHSR 398
P SPY S S
Sbjct: 50 GPTGYGDSPYQSFSA 64
>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c)
{Campylobacter jejuni [TaxId: 197]}
Length = 374
Score = 27.3 bits (59), Expect = 3.8
Identities = 7/55 (12%), Positives = 20/55 (36%)
Query: 222 ARKLRIPLPRNPAWYSLFHVLESDIQDVCKRILRLYTRPKANTDELERQIEVIKK 276
R L + + L + + ++ + L + + D++ ++I K
Sbjct: 317 TRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILK 371
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.130 0.377
Gapped
Lambda K H
0.267 0.0634 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,429,495
Number of extensions: 65688
Number of successful extensions: 208
Number of sequences better than 10.0: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 31
Length of query: 405
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 318
Effective length of database: 1,213,086
Effective search space: 385761348
Effective search space used: 385761348
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.8 bits)