BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2417
(391 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 119/288 (41%), Gaps = 34/288 (11%)
Query: 84 TLYDAFRKGAKESNNGRCLGWRQNISRPYQWIH-YNQALLRARNFGSGLLGLGVNPGSFV 142
+L+D + E CL I+ P ++ Y+ + +R + LGVN V
Sbjct: 62 SLHDYIFQNISEFATKPCL-----INGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVV 116
Query: 143 GIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQII 202
+ NCPE++++ A A P A I QA+ S ++I
Sbjct: 117 MLLLPNCPEFVLSFLAASFRGATATAANPFFTP---AEIAKQAKAS---------NTKLI 164
Query: 203 DRAPRCLKKIISIRE---VRMATMQRARSRAIE--IIRFDEIER--VGAQKMFEEVPPKP 255
R + KI ++ V + + S I +RF E+ + A ++ + V P
Sbjct: 165 ITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDSVEISP 224
Query: 256 TDLCTICYTSGTTGNPKGVMLTH-GNVXXXXXXXXXXXXDHRPKYSDVLISFLPLAHMLE 314
D+ + Y+SGTTG PKGVMLTH G V + DV++ LP+ H+
Sbjct: 225 DDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYA 284
Query: 315 RTCESAMFLVGGSIGYY-----SGDIKNLTEDMKTLKPTIMPAVPRLL 357
+++ L G +G +I L E ++ K T+ P VP ++
Sbjct: 285 L---NSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIV 329
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 102/252 (40%), Gaps = 32/252 (12%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPD 176
Y L AR SGL +G+ G + ++ + PE+++ GA II A P
Sbjct: 52 YADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPA 111
Query: 177 ACAFIINQAEISVLIVDDDSKC--NQIIDRAPRCLKKIISIREVRMATMQRARSRAIEII 234
A + +LI C ++ D A K++ + + + E+
Sbjct: 112 ELAKHAKASRAKLLIT---QACYYEKVKDFARESDVKVMCVDSAPDGCLHFS-----ELT 163
Query: 235 RFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVXXXXXXXXXXXXD 294
+ DE E +V P D+ + Y+SGTTG PKGVMLTH +
Sbjct: 164 QADENEA-------PQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNP 216
Query: 295 HRPKYS-DVLISFLPLAHMLERTCESAMFLVGGSIG--------YYSGDIKNLTEDMKTL 345
+ +S DV++ LP+ H+ +++ L G +G + G + L E K
Sbjct: 217 NLYFHSEDVILCVLPMFHIY---ALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKV- 272
Query: 346 KPTIMPAVPRLL 357
+I P VP ++
Sbjct: 273 --SIAPVVPPVM 282
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 94/248 (37%), Gaps = 23/248 (9%)
Query: 121 LLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAF 180
L RA SGLL GV+ G V I SQNC E I I++ + L D AF
Sbjct: 38 LARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAF 97
Query: 181 IINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIE 240
++ SV++ D + I++ + +++A + F +
Sbjct: 98 VLGDGAPSVVVAGTD-------------YRDIVAGVLPSLGGVKKAYAIGDGSGPFAPFK 144
Query: 241 RVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVXXXXXXXXXXXXDHRPKYS 300
+ + F D I +T+ G P+G +++ GN+ R +
Sbjct: 145 DLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW---RLTEA 201
Query: 301 DVLISFLPLAHM----LERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRL 356
DV + LPL H+ L T + A G S+ D D++ K T+M +
Sbjct: 202 DVNLGMLPLFHVTGLGLMLTLQQAG---GASVIAAKFDPAQAARDIEAHKVTVMAEFAPM 258
Query: 357 LNRMYDKV 364
L + D+
Sbjct: 259 LGNILDQA 266
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 17/85 (20%)
Query: 209 LKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEE------------VPPKPT 256
++ I+ + RM Q+ I I+F+ G ++FEE VP K T
Sbjct: 128 IQYILDDSQARMLLTQKHLVHLIHNIQFN-----GQVEIFEEDTIKIREGTNLHVPSKST 182
Query: 257 DLCTICYTSGTTGNPKGVMLTHGNV 281
DL + YTSGTTGNPKG ML H +
Sbjct: 183 DLAYVIYTSGTTGNPKGTMLEHKGI 207
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 84/216 (38%), Gaps = 37/216 (17%)
Query: 74 FLSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQW-IH---YNQALLRARNFGS 129
F ST+ D+ L+D + A G ++ +SR + +H Y + RAR
Sbjct: 9 FPSTMMDEELNLWDFLERAAA------LFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMG 62
Query: 130 GLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISV 189
GL LGV G V N + ++ L P A+I+N AE V
Sbjct: 63 GLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKV 122
Query: 190 LIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVG----AQ 245
L+ D P L + +IR + T+Q + DE G +
Sbjct: 123 LLFD------------PNLLPLVEAIRG-ELKTVQH-------FVVMDEKAPEGYLAYEE 162
Query: 246 KMFEEVPP---KPTDLCTICYTSGTTGNPKGVMLTH 278
+ EE P C + YT+GTTG PKGV+ +H
Sbjct: 163 ALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSH 198
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 85/216 (39%), Gaps = 17/216 (7%)
Query: 94 KESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWI 153
+E+ + + W + + + I Y + F + LL LG+ G V IY PE
Sbjct: 87 QENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAA 146
Query: 154 ITEQGAYCYSMIIVALYDTLGPDACAF-IINQAEISVLIVDDDSKCNQIIDRAPRCLKKI 212
+ + ++ P+A A II+ + V+ D+ + + I LKK
Sbjct: 147 VAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIP-----LKKN 201
Query: 213 I--SIREVRMATMQRA--RSRAIEIIRFDEIERVGAQKMFEEVPPK-------PTDLCTI 261
+ +++ + +++ R I + E + + + E+ P+ D I
Sbjct: 202 VDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFI 261
Query: 262 CYTSGTTGNPKGVMLTHGNVXXXXXXXXXXXXDHRP 297
YTSG+TG PKGV+ T G D+ P
Sbjct: 262 LYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHP 297
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 85/216 (39%), Gaps = 17/216 (7%)
Query: 94 KESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWI 153
+E+ + + W + + + I Y + F + LL LG+ G V IY PE
Sbjct: 87 QENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAA 146
Query: 154 ITEQGAYCYSMIIVALYDTLGPDACAF-IINQAEISVLIVDDDSKCNQIIDRAPRCLKKI 212
+ + ++ P+A A II+ + V+ D+ + + I LKK
Sbjct: 147 VAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIP-----LKKN 201
Query: 213 I--SIREVRMATMQRA--RSRAIEIIRFDEIERVGAQKMFEEVPPK-------PTDLCTI 261
+ +++ + +++ R I + E + + + E+ P+ D I
Sbjct: 202 VDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFI 261
Query: 262 CYTSGTTGNPKGVMLTHGNVXXXXXXXXXXXXDHRP 297
YTSG+TG PKGV+ T G D+ P
Sbjct: 262 LYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHP 297
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 85/216 (39%), Gaps = 17/216 (7%)
Query: 94 KESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWI 153
+E+ + + W + + + I Y + F + LL LG+ G V IY PE
Sbjct: 87 QENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAA 146
Query: 154 ITEQGAYCYSMIIVALYDTLGPDACAF-IINQAEISVLIVDDDSKCNQIIDRAPRCLKKI 212
+ + ++ P+A A II+ + V+ D+ + + I LKK
Sbjct: 147 VAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIP-----LKKN 201
Query: 213 I--SIREVRMATMQRA--RSRAIEIIRFDEIERVGAQKMFEEVPPK-------PTDLCTI 261
+ +++ + +++ R I + E + + + E+ P+ D I
Sbjct: 202 VDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFI 261
Query: 262 CYTSGTTGNPKGVMLTHGNVXXXXXXXXXXXXDHRP 297
YTSG+TG PKGV+ T G D+ P
Sbjct: 262 LYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHP 297
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 85/216 (39%), Gaps = 17/216 (7%)
Query: 94 KESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWI 153
+E+ + + W + + + I Y + F + LL LG+ G V IY PE
Sbjct: 87 QENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAA 146
Query: 154 ITEQGAYCYSMIIVALYDTLGPDACAF-IINQAEISVLIVDDDSKCNQIIDRAPRCLKKI 212
+ + ++ P+A A II+ + V+ D+ + + I LKK
Sbjct: 147 VAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIP-----LKKN 201
Query: 213 I--SIREVRMATMQRA--RSRAIEIIRFDEIERVGAQKMFEEVPPK-------PTDLCTI 261
+ +++ + +++ R I + E + + + E+ P+ D I
Sbjct: 202 VDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFI 261
Query: 262 CYTSGTTGNPKGVMLTHGNVXXXXXXXXXXXXDHRP 297
YTSG+TG PKGV+ T G D+ P
Sbjct: 262 LYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHP 297
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 85/216 (39%), Gaps = 17/216 (7%)
Query: 94 KESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWI 153
+E+ + + W + + + I Y + F + LL LG+ G V IY PE
Sbjct: 87 QENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAA 146
Query: 154 ITEQGAYCYSMIIVALYDTLGPDACAF-IINQAEISVLIVDDDSKCNQIIDRAPRCLKKI 212
+ + ++ P+A A II+ + V+ D+ + + I LKK
Sbjct: 147 VAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIP-----LKKN 201
Query: 213 I--SIREVRMATMQRA--RSRAIEIIRFDEIERVGAQKMFEEVPPK-------PTDLCTI 261
+ +++ + +++ R I + E + + + E+ P+ D I
Sbjct: 202 VDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFI 261
Query: 262 CYTSGTTGNPKGVMLTHGNVXXXXXXXXXXXXDHRP 297
YTSG+TG PKGV+ T G D+ P
Sbjct: 262 LYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHP 297
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 85/216 (39%), Gaps = 17/216 (7%)
Query: 94 KESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWI 153
+E+ + + W + + + I Y + F + LL LG+ G V IY PE
Sbjct: 87 QENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAA 146
Query: 154 ITEQGAYCYSMIIVALYDTLGPDACAF-IINQAEISVLIVDDDSKCNQIIDRAPRCLKKI 212
+ + ++ P+A A II+ + V+ D+ + + I LKK
Sbjct: 147 VAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIP-----LKKN 201
Query: 213 I--SIREVRMATMQR--ARSRAIEIIRFDEIERVGAQKMFEEVPPK-------PTDLCTI 261
+ +++ + +++ R I + E + + + E+ P+ D I
Sbjct: 202 VDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFI 261
Query: 262 CYTSGTTGNPKGVMLTHGNVXXXXXXXXXXXXDHRP 297
YTSG+TG PKGV+ T G D+ P
Sbjct: 262 LYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHP 297
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 84/216 (38%), Gaps = 17/216 (7%)
Query: 94 KESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWI 153
+E+ + + W + + + I Y + F + LL LG+ G V IY PE
Sbjct: 87 QENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAA 146
Query: 154 ITEQGAYCYSMIIVALYDTLGPDACAF-IINQAEISVLIVDDDSKCNQIIDRAPRCLKKI 212
+ + ++ P+A A II+ + V+ D+ + I LKK
Sbjct: 147 VAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGASIP-----LKKN 201
Query: 213 I--SIREVRMATMQRA--RSRAIEIIRFDEIERVGAQKMFEEVPPK-------PTDLCTI 261
+ +++ + +++ R I + E + + + E+ P+ D I
Sbjct: 202 VDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFI 261
Query: 262 CYTSGTTGNPKGVMLTHGNVXXXXXXXXXXXXDHRP 297
YTSG+TG PKGV+ T G D+ P
Sbjct: 262 LYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHP 297
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 253 PKPTDLCTICYTSGTTGNPKGVMLTHGNV 281
P D+ + YTSGTTGNPKGV + H NV
Sbjct: 172 PGAEDMAYVIYTSGTTGNPKGVPVRHANV 200
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 63/175 (36%), Gaps = 36/175 (20%)
Query: 113 QWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDT 172
Q + Y + A L G GS V +Y++ E +I G + A Y
Sbjct: 488 QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGV----LKAGAAYLP 543
Query: 173 LGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIE 232
+ P + + IS ++ D + C + T Q + +A E
Sbjct: 544 VDPK-----LPEDRISYMLADSAAAC---------------------LLTHQEMKEQAAE 577
Query: 233 IIRFDEIERVGAQKMFEEVPPKPT------DLCTICYTSGTTGNPKGVMLTHGNV 281
+ + Q FEE P D I YTSGTTG PKG + TH N+
Sbjct: 578 LPYTGTTLFIDDQTRFEEQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANI 632
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 253 PKPTDLCTICYTSGTTGNPKGVMLTHGNVXXXXXXXXXXXXDHRPKYSDVLISFLPLAH 311
P P D+ + YTSG+T P+GV++TH V RP D +S+LP H
Sbjct: 172 PVPNDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDGIKLRP--GDRCVSWLPFYH 228
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 16/152 (10%)
Query: 134 LGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVD 193
+GV G V +Y PE IIT I ++ ++ IN + V+I
Sbjct: 134 MGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITT 193
Query: 194 DDS-------KCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQK 246
D+S + +I+D A L++ +R V + S A R +++ +K
Sbjct: 194 DESNRGGKVIETKRIVDDA---LRETPGVRHVLVYRKTNNPSVAFHAPR--DLDWATEKK 248
Query: 247 MFEE----VPPKPTDLCTICYTSGTTGNPKGV 274
++ P D + YTSG+TG PKGV
Sbjct: 249 KYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGV 280
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 43/106 (40%), Gaps = 7/106 (6%)
Query: 257 DLCTICYTSGTTGNPKGVMLTHGNVXXXXXXXXXXXXDHRPKYSDVLISFLPL--AHMLE 314
DL I YTSGTTG G ML+H N+ R DVLI LP+ H L
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYW---RFTPDDVLIHALPIYHTHGLF 212
Query: 315 RTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRM 360
+F G I D + + M + T++ VP R+
Sbjct: 213 VASNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFYTRL 256
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 43/106 (40%), Gaps = 7/106 (6%)
Query: 257 DLCTICYTSGTTGNPKGVMLTHGNVXXXXXXXXXXXXDHRPKYSDVLISFLPL--AHMLE 314
DL I YTSGTTG G ML+H N+ R DVLI LP+ H L
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYW---RFTPDDVLIHALPIYHTHGLF 212
Query: 315 RTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRM 360
+F G I D + + M + T++ VP R+
Sbjct: 213 VASNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFYTRL 256
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 43/106 (40%), Gaps = 7/106 (6%)
Query: 257 DLCTICYTSGTTGNPKGVMLTHGNVXXXXXXXXXXXXDHRPKYSDVLISFLPL--AHMLE 314
DL I YTSGTTG G ML+H N+ R DVLI LP+ H L
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYW---RFTPDDVLIHALPIYHTHGLF 212
Query: 315 RTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRM 360
+F G I D + + M + T++ VP R+
Sbjct: 213 VASNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFYTRL 256
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 257 DLCTICYTSGTTGNPKGVMLTHGNVXXXXXXXXXXXXDHRPKYSDVLISFLPLAH 311
DL I YTSGTTG KG L+H N+ R DVLI LP+ H
Sbjct: 156 DLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYW---RFTPDDVLIHALPIYH 207
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 261 ICYTSGTTGNPKGVMLTHGNVXXXXXXXXXXXXDHRPKYSDVLISFLPLAHMLERT 316
I YTSGTTG+PKGV+ TH +V D R Y D L+ LP+ H+ T
Sbjct: 175 IMYTSGTTGHPKGVVHTHESV-HSAASSWASTIDVR--YRDRLLLPLPMFHVAALT 227
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 261 ICYTSGTTGNPKGVMLTHGNVXXXXXXXXXXXXDHRPKYSDVLISFLPLAHMLERT 316
I YTSGTTG+PKGV+ TH +V +Y D L+ LP+ H+ T
Sbjct: 161 IMYTSGTTGHPKGVVHTHESVHSAASSWASTID---VRYRDRLLLPLPMFHVAALT 213
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 48/114 (42%), Gaps = 10/114 (8%)
Query: 170 YDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSR 229
YD L A I V + + II+ A L II+I E +
Sbjct: 65 YDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSL--IIAIEEFPLTI------E 116
Query: 230 AIEIIRFDEIERVGAQKM-FEEVPP-KPTDLCTICYTSGTTGNPKGVMLTHGNV 281
I ++ EIE +M +E K D I +TSGTTG PKGV ++H N+
Sbjct: 117 GISLVSLSEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNL 170
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 28/156 (17%)
Query: 123 RARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFII 182
RA L+GLGV PG+ VG++ + + ++ A + Y L P F +
Sbjct: 109 RANRLAHRLVGLGVAPGTLVGVHLERGFDMVV----ALLAVLKAGGGYTMLDPQ---FPV 161
Query: 183 NQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERV 242
+ +S+ +D+ ++ P +S R T+ A + + V
Sbjct: 162 ERLALSL----EDTGAPLLVTSRP------LSGRLTGTTTLYVEDEAASDAPAGNLATGV 211
Query: 243 GAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTH 278
G P D+ + +TSG+TG PKGVM H
Sbjct: 212 G-----------PEDVACVMFTSGSTGRPKGVMSPH 236
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 28/156 (17%)
Query: 123 RARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFII 182
RA L+GLGV PG+ VG++ + + ++ A + Y L P F +
Sbjct: 109 RANRLAHRLVGLGVAPGTLVGVHLERGFDMVV----ALLAVLKAGGGYTMLDPQ---FPV 161
Query: 183 NQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERV 242
+ +S+ +D+ ++ P +S R T+ A + + V
Sbjct: 162 ERLALSL----EDTGAPLLVTSRP------LSGRLTGTTTLYVEDEAASDAPAGNLATGV 211
Query: 243 GAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTH 278
G P D+ + +TSG+TG PKGVM H
Sbjct: 212 G-----------PEDVACVMFTSGSTGRPKGVMSPH 236
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 106/275 (38%), Gaps = 42/275 (15%)
Query: 125 RNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQ 184
+ SG+ GV G VG+ N +++ T + + V + I+N
Sbjct: 63 KKLASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFELEHILND 122
Query: 185 AEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGA 244
+E + L+V + + + L+K ++R E+ E+ G+
Sbjct: 123 SEATTLVVH-----SXLYENFKPVLEK---------TGVERVFVVGGEVNSLSEVXDSGS 168
Query: 245 QKMFEEVPPKPT-DLCTICYTSGTTGNPKGVMLTHGNVXXXXXXXXXXXXDHRPKYSDVL 303
+ FE V P D+ I YT GTTG PKGV LTH N+ + D +
Sbjct: 169 ED-FENVKVNPEEDVALIPYTGGTTGXPKGVXLTHFNLAANALQLAVATG---LSHXDTI 224
Query: 304 ISFLPLAHMLERTCESAMFLVGGS---IGYYSGDIKNLTEDMKTLKPTIMPAVPRLL--- 357
+ P H E + VG G ++ + L E+++ K T AVP L
Sbjct: 225 VGCXPXFHSAEFGLVNLXVTVGNEYVVXGXFNQE--XLAENIEKYKGTFSWAVPPALNVL 282
Query: 358 -------NRMYD----KVMAQ----IRPSFIKRLM 377
N+ YD KV A + P+ +++L+
Sbjct: 283 VNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLL 317
>pdb|2G9H|D Chain D, Crystal Structure Of Staphylococcal Enterotoxin I (Sei) In
Complex With A Human Mhc Class Ii Molecule
Length = 218
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 28 NLALVGTNE-TMRLRFYYQSDRS---SNLRGRGREVVRVSKFFSGASEGKFLSTLYDDVK 83
N LV E ++LR Y Q + + N G+G+E SKF+SG ++GK L L D+
Sbjct: 116 NKKLVTAQEIDVKLRRYLQEEYNIYGHNSTGKGKEYGYKSKFYSGFNKGKVLFHLNDEKS 175
Query: 84 TLYDAFRKG 92
YD F G
Sbjct: 176 FSYDLFYTG 184
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 261 ICYTSGTTGNPKGVMLTHGNV 281
I YTSG+TGNPKGV ++ N+
Sbjct: 148 IIYTSGSTGNPKGVQISAANL 168
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 254 KPTDLCTICYTSGTTGNPKGVMLTHGNV 281
K D+ + YTSG+T +PKGV ++H N+
Sbjct: 165 KSNDIAFLQYTSGSTXHPKGVXVSHHNL 192
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 16/18 (88%)
Query: 261 ICYTSGTTGNPKGVMLTH 278
I YTSG+TGNPKGV +T+
Sbjct: 149 IIYTSGSTGNPKGVQITY 166
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 16/18 (88%)
Query: 261 ICYTSGTTGNPKGVMLTH 278
I YTSG+TGNPKGV +T+
Sbjct: 149 IIYTSGSTGNPKGVQITY 166
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 263 YTSGTTGNPKGVMLTHGNVXXXXXXXXX---XXXDHRPKYSDVLISFLPLAH 311
YTSG+T P GV+++H NV D P + L+S+LP H
Sbjct: 190 YTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYH 241
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 257 DLCTICYTSGTTGNPKGVMLTHGNV 281
D+ Y+SG+TG PKG + TH N+
Sbjct: 184 DIAFWLYSSGSTGKPKGTVHTHANL 208
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 263 YTSGTTGNPKGVMLTHGNVXXXXXXXXX---XXXDHRPKYSDVLISFLPLAH 311
YTSG+T P GV+ +H NV D P + L+S+LP H
Sbjct: 190 YTSGSTRTPAGVVXSHQNVRVNFEQLXSGYFADTDGIPPPNSALVSWLPFYH 241
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 258 LCTICYTSGTTGNPKGVMLTHGNVXXXXXXXXXXXXDHRPKYSDVLISFLPLAH 311
+ I +SG+TG PKGV LTH N+ ++ +++ +P H
Sbjct: 194 VALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHH 247
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 258 LCTICYTSGTTGNPKGVMLTHGNVXXXXXXXXXXXXDHRPKYSDVLISFLPLAH 311
+ I +SG+TG PKGV LTH N+ ++ +++ +P H
Sbjct: 194 VALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHH 247
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 258 LCTICYTSGTTGNPKGVMLTHGNVXXXXXXXXXXXXDHRPKYSDVLISFLPLAH 311
+ I +SG+TG PKGV LTH N+ ++ +++ +P H
Sbjct: 194 VALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHH 247
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 254 KPTDLCTICYTSGTTGNPKGVMLTHGNV 281
+ T I +SG+TG PKGV LTH N+
Sbjct: 222 RETATALIMNSSGSTGLPKGVELTHKNI 249
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 250 EVPPKPTDLCTICYTSGTTGNPKGVMLTHGN 280
EV K D+C + ++SGT G PK M+ H N
Sbjct: 219 EVSTKNEDICLVYFSSGTAGFPK--MVEHDN 247
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 257 DLCTICYTSGTTGNPKGVMLTHGNVXXXXXXXXXXXXDHRPKYSDVLISFLPLAHM 312
D + YTSGTTG PKG ++ + + DVL+ LPL H+
Sbjct: 156 DPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHV 208
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 239 IERVGAQKMFEEVPPKPTDL-CTICYTSGTTGNPKGVMLTHGNV 281
IE + Q + + P +L + YTSG+TG PKGV ++ N+
Sbjct: 157 IENLSTQDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNL 200
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,060,127
Number of Sequences: 62578
Number of extensions: 439350
Number of successful extensions: 925
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 864
Number of HSP's gapped (non-prelim): 50
length of query: 391
length of database: 14,973,337
effective HSP length: 101
effective length of query: 290
effective length of database: 8,652,959
effective search space: 2509358110
effective search space used: 2509358110
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)