Query psy2417
Match_columns 391
No_of_seqs 257 out of 2342
Neff 9.6
Searched_HMMs 29240
Date Sat Aug 17 00:26:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2417.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2417hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o83_A Peptide arylation enzym 100.0 6.1E-43 2.1E-47 348.9 25.0 282 81-384 28-320 (544)
2 3r44_A Fatty acyl COA syntheta 100.0 5.2E-43 1.8E-47 347.3 22.8 283 78-384 11-297 (517)
3 3g7s_A Long-chain-fatty-acid-- 100.0 8.8E-43 3E-47 348.2 24.2 283 82-383 18-308 (549)
4 1mdb_A 2,3-dihydroxybenzoate-A 100.0 3.8E-43 1.3E-47 350.0 21.2 278 82-385 24-312 (539)
5 3ivr_A Putative long-chain-fat 100.0 1.3E-42 4.6E-47 343.8 24.0 277 82-383 5-284 (509)
6 3ni2_A 4-coumarate:COA ligase; 100.0 5.2E-43 1.8E-47 348.9 19.4 290 78-385 17-311 (536)
7 1t5h_X 4-chlorobenzoyl COA lig 100.0 2.1E-42 7.1E-47 342.1 23.5 272 83-385 2-286 (504)
8 1v25_A Long-chain-fatty-acid-C 100.0 2.5E-42 8.7E-47 344.2 24.1 283 82-384 17-306 (541)
9 3rix_A Luciferase, luciferin 4 100.0 2.5E-42 8.5E-47 345.0 22.1 291 82-384 19-320 (550)
10 2vsq_A Surfactin synthetase su 100.0 5.5E-43 1.9E-47 380.7 18.7 319 27-383 388-732 (1304)
11 3etc_A AMP-binding protein; ad 100.0 1.2E-41 4E-46 341.8 24.5 291 80-385 52-355 (580)
12 1pg4_A Acetyl-COA synthetase; 100.0 4.3E-42 1.5E-46 349.5 20.3 295 83-385 76-392 (652)
13 4dg8_A PA1221; ANL superfamily 100.0 4.4E-42 1.5E-46 347.0 19.5 262 81-384 25-289 (620)
14 3rg2_A Enterobactin synthase c 100.0 3E-41 1E-45 341.5 25.4 279 80-384 24-315 (617)
15 1ry2_A Acetyl-coenzyme A synth 100.0 1E-41 3.6E-46 347.0 22.1 296 83-385 82-398 (663)
16 3e7w_A D-alanine--poly(phospho 100.0 8.7E-42 3E-46 338.2 19.6 266 83-383 1-272 (511)
17 3t5a_A Long-chain-fatty-acid-- 100.0 1E-41 3.4E-46 335.1 19.7 275 82-384 23-324 (480)
18 3fce_A D-alanine--poly(phospho 100.0 1.2E-41 3.9E-46 337.4 19.4 268 83-384 1-274 (512)
19 4gr5_A Non-ribosomal peptide s 100.0 1.5E-41 5.2E-46 340.7 19.8 265 80-384 72-339 (570)
20 1amu_A GRSA, gramicidin synthe 100.0 4.6E-41 1.6E-45 336.4 21.8 267 80-384 36-306 (563)
21 3tsy_A Fusion protein 4-coumar 100.0 3.5E-41 1.2E-45 357.8 20.3 296 77-383 55-356 (979)
22 2d1s_A Luciferase, luciferin 4 100.0 6.9E-41 2.4E-45 334.3 20.9 284 82-384 24-322 (548)
23 3c5e_A Acyl-coenzyme A synthet 100.0 3.1E-40 1.1E-44 330.9 24.7 284 83-384 38-335 (570)
24 3l8c_A D-alanine--poly(phospho 100.0 2.4E-40 8.3E-45 328.6 21.4 266 82-384 3-277 (521)
25 3ipl_A 2-succinylbenzoate--COA 100.0 1E-40 3.5E-45 329.7 18.2 283 84-384 2-287 (501)
26 3kxw_A Saframycin MX1 syntheta 100.0 2.9E-40 1E-44 332.9 21.0 282 80-384 8-302 (590)
27 4fuq_A Malonyl COA synthetase; 100.0 1.2E-40 4.1E-45 329.3 16.0 272 87-383 4-280 (503)
28 2v7b_A Benzoate-coenzyme A lig 100.0 2.4E-40 8.3E-45 329.2 18.0 283 82-384 23-313 (529)
29 3gqw_A Fatty acid AMP ligase; 100.0 5.9E-39 2E-43 322.4 21.5 278 79-384 17-312 (576)
30 3ite_A SIDN siderophore synthe 100.0 8.8E-38 3E-42 313.0 22.0 283 77-384 14-307 (562)
31 3nyq_A Malonyl-COA ligase; A/B 100.0 1.4E-38 4.8E-43 314.6 12.1 257 82-383 21-284 (505)
32 4gs5_A Acyl-COA synthetase (AM 99.9 7.3E-23 2.5E-27 193.0 2.8 127 255-385 36-162 (358)
33 3qov_A Phenylacetate-coenzyme 99.7 1.4E-18 4.9E-23 168.1 6.1 129 253-384 82-219 (436)
34 2y27_A Phenylacetate-coenzyme 99.7 3.8E-18 1.3E-22 165.2 8.4 130 252-384 86-223 (437)
35 3hgu_A EHPF; phenazine, antibi 99.7 1.1E-18 3.8E-23 165.2 4.3 132 253-384 88-244 (369)
36 2y4o_A Phenylacetate-coenzyme 99.7 4.8E-18 1.6E-22 164.8 7.6 129 253-384 89-225 (443)
37 2y27_A Phenylacetate-coenzyme 91.4 2 7E-05 40.3 12.3 121 96-218 88-221 (437)
38 2y4o_A Phenylacetate-coenzyme 90.9 2.3 7.9E-05 40.0 12.2 121 96-218 90-223 (443)
39 3qov_A Phenylacetate-coenzyme 88.1 2.7 9.3E-05 39.4 10.3 119 98-218 86-217 (436)
40 3ipl_A 2-succinylbenzoate--COA 84.0 18 0.00063 34.3 14.0 118 96-218 161-285 (501)
41 1v25_A Long-chain-fatty-acid-C 79.9 19 0.00065 34.7 12.5 102 254-361 31-134 (541)
42 3rix_A Luciferase, luciferin 4 79.6 5.3 0.00018 38.8 8.4 104 255-363 34-139 (550)
43 3hgu_A EHPF; phenazine, antibi 79.1 14 0.00048 33.5 10.7 120 96-218 89-242 (369)
44 3ivr_A Putative long-chain-fat 78.2 15 0.0005 35.1 11.0 99 254-362 19-119 (509)
45 3g7s_A Long-chain-fatty-acid-- 78.1 22 0.00076 34.3 12.3 107 254-362 32-140 (549)
46 4b2g_A GH3-1 auxin conjugating 76.2 1.9 6.6E-05 42.4 4.0 54 231-284 72-128 (609)
47 1t5h_X 4-chlorobenzoyl COA lig 75.9 25 0.00086 33.4 11.9 99 254-360 15-117 (504)
48 3ni2_A 4-coumarate:COA ligase; 75.4 17 0.0006 34.9 10.7 101 254-362 35-137 (536)
49 4epl_A Jasmonic acid-amido syn 74.8 1.5 5.1E-05 43.0 2.7 54 230-283 70-126 (581)
50 3c5e_A Acyl-coenzyme A synthet 74.6 38 0.0013 32.8 13.0 103 254-361 56-161 (570)
51 2d1s_A Luciferase, luciferin 4 73.6 20 0.0007 34.6 10.7 118 98-218 192-320 (548)
52 3t5a_A Long-chain-fatty-acid-- 73.5 43 0.0015 31.3 12.8 107 254-362 37-148 (480)
53 1mdb_A 2,3-dihydroxybenzoate-A 73.0 45 0.0015 32.0 12.9 118 96-218 180-309 (539)
54 3o83_A Peptide arylation enzym 72.9 39 0.0013 32.5 12.5 118 96-218 189-318 (544)
55 4fuq_A Malonyl COA synthetase; 71.1 29 0.001 33.0 11.0 99 255-360 14-114 (503)
56 2v7b_A Benzoate-coenzyme A lig 71.0 21 0.0007 34.3 10.0 98 254-361 36-135 (529)
57 1ry2_A Acetyl-coenzyme A synth 70.9 44 0.0015 33.1 12.6 98 254-355 95-195 (663)
58 4eql_A 4-substituted benzoates 70.8 2.3 7.7E-05 41.7 2.9 55 230-284 65-122 (581)
59 3kxw_A Saframycin MX1 syntheta 69.6 49 0.0017 32.0 12.5 102 254-361 24-130 (590)
60 1amu_A GRSA, gramicidin synthe 69.6 36 0.0012 33.0 11.4 95 254-358 52-148 (563)
61 3r44_A Fatty acyl COA syntheta 68.5 49 0.0017 31.5 12.1 100 254-361 29-130 (517)
62 3etc_A AMP-binding protein; ad 68.3 40 0.0014 32.7 11.5 97 254-355 69-167 (580)
63 1pg4_A Acetyl-COA synthetase; 67.1 42 0.0014 33.2 11.5 98 254-355 89-188 (652)
64 3fce_A D-alanine--poly(phospho 66.4 31 0.0011 32.8 10.1 119 96-218 142-272 (512)
65 4gr5_A Non-ribosomal peptide s 64.1 49 0.0017 32.0 11.1 93 254-356 88-182 (570)
66 3e7w_A D-alanine--poly(phospho 63.0 56 0.0019 31.0 11.2 119 96-218 141-271 (511)
67 3tsy_A Fusion protein 4-coumar 61.8 23 0.00078 37.1 8.7 99 254-360 74-174 (979)
68 4dg8_A PA1221; ANL superfamily 57.9 88 0.003 30.6 11.8 118 96-218 162-287 (620)
69 3tbh_A O-acetyl serine sulfhyd 57.9 49 0.0017 29.7 9.2 67 129-195 60-127 (334)
70 3l8c_A D-alanine--poly(phospho 56.2 55 0.0019 31.1 9.8 91 254-354 17-109 (521)
71 3rg2_A Enterobactin synthase c 55.8 1.4E+02 0.0047 29.1 12.9 117 97-218 183-313 (617)
72 4gs5_A Acyl-COA synthetase (AM 54.7 63 0.0021 29.1 9.5 115 96-217 35-158 (358)
73 3nyq_A Malonyl-COA ligase; A/B 49.1 1.6E+02 0.0053 27.8 11.7 95 96-195 153-252 (505)
74 3ite_A SIDN siderophore synthe 46.8 1.7E+02 0.0058 27.9 11.7 99 254-355 33-135 (562)
75 3gqw_A Fatty acid AMP ligase; 44.8 1.5E+02 0.0051 28.3 11.0 88 273-361 47-143 (576)
76 3vc3_A Beta-cyanoalnine syntha 44.0 1.2E+02 0.0041 27.2 9.4 65 131-195 77-142 (344)
77 4eez_A Alcohol dehydrogenase 1 42.1 1.4E+02 0.0049 26.3 9.8 79 114-195 136-217 (348)
78 1z7w_A Cysteine synthase; tran 39.7 1.4E+02 0.0049 26.2 9.2 65 131-195 57-122 (322)
79 4aec_A Cysteine synthase, mito 38.4 1.4E+02 0.0049 27.7 9.2 65 131-195 165-230 (430)
80 3ist_A Glutamate racemase; str 37.9 1.3E+02 0.0046 25.8 8.4 63 87-153 19-81 (269)
81 3ju7_A Putative PLP-dependent 37.8 75 0.0026 28.8 7.2 64 128-194 67-137 (377)
82 3gdw_A Sigma-54 interaction do 36.9 1.4E+02 0.0048 22.8 8.6 90 267-360 1-105 (139)
83 2q3b_A Cysteine synthase A; py 34.9 1.9E+02 0.0067 25.2 9.3 66 129-195 56-122 (313)
84 1eg5_A Aminotransferase; PLP-d 34.9 1.4E+02 0.0049 26.3 8.6 56 137-193 87-146 (384)
85 2ayi_A Aminopeptidase T; metal 34.6 1.3E+02 0.0045 27.8 8.2 49 121-169 5-57 (408)
86 3dzz_A Putative pyridoxal 5'-p 34.0 1.3E+02 0.0045 26.7 8.2 56 136-194 106-168 (391)
87 3ffh_A Histidinol-phosphate am 32.2 2.6E+02 0.0088 24.5 11.9 54 136-193 105-162 (363)
88 4h1h_A LMO1638 protein; MCCF-l 32.0 1.3E+02 0.0046 26.7 7.6 85 135-219 8-117 (327)
89 1o69_A Aminotransferase; struc 31.1 1.8E+02 0.0062 26.1 8.7 61 131-194 64-130 (394)
90 3ijw_A Aminoglycoside N3-acety 30.8 71 0.0024 27.7 5.3 45 125-169 18-72 (268)
91 3tqh_A Quinone oxidoreductase; 30.7 1.9E+02 0.0065 25.2 8.5 77 114-195 125-205 (321)
92 2v03_A Cysteine synthase B; py 30.3 2.7E+02 0.0092 24.1 9.5 65 130-195 51-116 (303)
93 3jv7_A ADH-A; dehydrogenase, n 29.6 2E+02 0.0069 25.3 8.6 86 115-203 143-233 (345)
94 2egu_A Cysteine synthase; O-ac 29.6 2.2E+02 0.0076 24.7 8.7 66 129-195 54-120 (308)
95 2pqm_A Cysteine synthase; OASS 29.4 2E+02 0.007 25.5 8.5 64 131-195 69-133 (343)
96 1zjc_A Aminopeptidase AMPS; me 29.4 1.7E+02 0.0059 27.1 8.0 49 120-168 7-59 (418)
97 3sr3_A Microcin immunity prote 28.1 1.8E+02 0.0063 25.9 7.8 86 135-220 9-119 (336)
98 3s2e_A Zinc-containing alcohol 27.9 3E+02 0.01 24.1 9.4 78 114-195 139-219 (340)
99 3dwg_A Cysteine synthase B; su 27.4 2.9E+02 0.0099 24.3 9.1 64 131-195 64-128 (325)
100 1zsy_A Mitochondrial 2-enoyl t 26.9 2.4E+02 0.0081 25.1 8.6 79 114-193 139-223 (357)
101 2e7j_A SEP-tRNA:Cys-tRNA synth 25.8 3E+02 0.01 24.0 9.1 56 136-194 90-155 (371)
102 2nyg_A YOKD protein; PFAM02522 25.0 1.1E+02 0.0036 26.6 5.4 22 126-147 17-38 (273)
103 1mdo_A ARNB aminotransferase; 25.0 1.7E+02 0.0057 26.1 7.2 59 131-193 71-134 (393)
104 3ri6_A O-acetylhomoserine sulf 24.7 2.2E+02 0.0075 26.3 8.0 14 181-194 141-154 (430)
105 2jtq_A Phage shock protein E; 24.7 1.6E+02 0.0054 19.7 5.4 45 113-164 22-66 (85)
106 3tla_A MCCF; serine protease, 24.7 2E+02 0.0069 26.1 7.5 86 135-220 39-149 (371)
107 3a2b_A Serine palmitoyltransfe 24.1 3.8E+02 0.013 23.8 9.5 55 136-194 124-181 (398)
108 3acd_A Hypoxanthine-guanine ph 24.0 1.1E+02 0.0037 24.6 5.0 45 113-158 12-56 (181)
109 3nra_A Aspartate aminotransfer 23.9 3.8E+02 0.013 23.7 12.2 53 136-192 123-185 (407)
110 2vsq_A Surfactin synthetase su 23.9 3.1E+02 0.011 29.5 10.0 93 254-356 477-571 (1304)
111 4e5s_A MCCFLIKE protein (BA_56 23.8 2.1E+02 0.0073 25.4 7.4 86 135-220 8-118 (331)
112 2duw_A Putative COA-binding pr 23.4 1.3E+02 0.0045 22.9 5.3 51 139-190 71-121 (145)
113 3l6b_A Serine racemase; pyrido 22.7 1.9E+02 0.0066 25.8 7.0 52 144-195 80-131 (346)
114 2d59_A Hypothetical protein PH 22.6 1.5E+02 0.005 22.6 5.4 49 140-189 79-127 (144)
115 3isl_A Purine catabolism prote 22.6 3.1E+02 0.01 24.4 8.6 58 136-194 83-144 (416)
116 2jgn_A DBX, DDX3, ATP-dependen 22.2 2.7E+02 0.0092 22.0 7.2 91 122-218 31-124 (185)
117 1c7n_A Cystalysin; transferase 21.9 3.2E+02 0.011 24.2 8.6 25 268-292 243-268 (399)
118 3b8x_A WBDK, pyridoxamine 5-ph 21.9 2.9E+02 0.0099 24.6 8.2 54 135-192 76-134 (390)
119 2ch1_A 3-hydroxykynurenine tra 21.5 3.4E+02 0.012 24.0 8.6 57 136-193 90-150 (396)
120 3lvm_A Cysteine desulfurase; s 21.4 3.3E+02 0.011 24.4 8.5 57 137-194 111-171 (423)
121 3hbm_A UDP-sugar hydrolase; PS 21.3 67 0.0023 28.0 3.4 84 122-219 19-103 (282)
122 4a2c_A Galactitol-1-phosphate 21.3 4.1E+02 0.014 23.2 9.9 72 129-204 151-223 (346)
123 3uhf_A Glutamate racemase; str 21.2 3.1E+02 0.011 23.6 7.7 62 87-152 38-99 (274)
124 1y81_A Conserved hypothetical 21.1 1.9E+02 0.0064 21.9 5.7 51 139-190 70-120 (138)
125 1y7l_A O-acetylserine sulfhydr 20.9 4.1E+02 0.014 23.0 9.0 65 130-195 52-117 (316)
126 3ohp_A Hypoxanthine phosphorib 20.8 1.9E+02 0.0065 23.0 5.9 47 113-159 7-53 (177)
127 1gu7_A Enoyl-[acyl-carrier-pro 20.8 2.8E+02 0.0095 24.6 7.8 79 114-193 138-223 (364)
128 2z9v_A Aspartate aminotransfer 20.8 2.9E+02 0.0099 24.4 7.9 58 136-194 80-142 (392)
129 4b7c_A Probable oxidoreductase 20.7 4.2E+02 0.014 23.0 9.8 61 132-195 143-204 (336)
130 2jfz_A Glutamate racemase; cel 20.4 1.8E+02 0.0062 24.6 6.0 61 87-151 14-74 (255)
131 2cf5_A Atccad5, CAD, cinnamyl 20.4 2.3E+02 0.0079 25.2 7.1 78 114-194 152-233 (357)
132 3oon_A Outer membrane protein 20.2 2.6E+02 0.0088 20.4 6.2 60 85-144 35-94 (123)
133 2gzm_A Glutamate racemase; enz 20.1 4E+02 0.014 22.6 8.9 61 87-151 17-77 (267)
134 3two_A Mannitol dehydrogenase; 20.1 3.7E+02 0.013 23.6 8.4 74 114-191 149-225 (348)
No 1
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=6.1e-43 Score=348.93 Aligned_cols=282 Identities=13% Similarity=0.105 Sum_probs=233.9
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHH
Q psy2417 81 DVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAY 160 (391)
Q Consensus 81 ~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~ 160 (391)
...|+.++|+++++++||++|+.+.+ +.+||+||+++++++|++|+++|+++|++|+|+++|+++|++++|||+
T Consensus 28 ~~~tl~~~l~~~a~~~p~~~Al~~~~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~ 101 (544)
T 3o83_A 28 IDQPLTRILTVGVQSHPHSLAIICGE------RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALL 101 (544)
T ss_dssp CCCCTTHHHHHHHHHCTTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCceEEEcCC------CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 45689999999999999999999876 799999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcc-------hhHHHhhcccCccEEEEecCcchHHHHHHhhCCceE
Q psy2417 161 CYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSK-------CNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEI 233 (391)
Q Consensus 161 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-------~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~ 233 (391)
++|+++||+++.++.+++.+++++++++++|++.... ...+..... ..+.++.++.... .
T Consensus 102 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------------~ 168 (544)
T 3o83_A 102 KAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNL-SPEIILMLNHQAT------------D 168 (544)
T ss_dssp HHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTC-CCSEEEEETCCTT------------S
T ss_pred HhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhccc-CcceEEEecCCcc------------c
Confidence 9999999999999999999999999999999987632 111222222 4455665554211 1
Q ss_pred EeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHH
Q psy2417 234 IRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHML 313 (391)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 313 (391)
..+.++...............+++++||+|||||||.||||+++|+++.+.+......++ +.++|++++++|++|.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~---~~~~d~~l~~~p~~h~~ 245 (544)
T 3o83_A 169 FGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICG---LNSNTRLLCALPAPHNF 245 (544)
T ss_dssp EEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTT---CCTTCEEEECSCTTSHH
T ss_pred cchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhC---CCCCCeEEEecCcceEe
Confidence 234444433322222224456899999999999999999999999999999999888888 99999999999999999
Q ss_pred HHHH--HHHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH-HhcCchhHHHHHHHHHHHH
Q psy2417 314 ERTC--ESAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM-AQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 314 g~~~--~~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~-~~~~~~slr~~~~gga~~~ 384 (391)
++.. .+.+|..|+++++.+. ++..+++.|+++++|++.++|+++..+++... ...++++||.+++||+...
T Consensus 246 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~ 320 (544)
T 3o83_A 246 MLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFP 320 (544)
T ss_dssp HHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCC
T ss_pred ecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCC
Confidence 9875 5889999999999876 99999999999999999999999999988743 3455678888888887653
No 2
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=5.2e-43 Score=347.28 Aligned_cols=283 Identities=23% Similarity=0.175 Sum_probs=228.5
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHH
Q psy2417 78 LYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQ 157 (391)
Q Consensus 78 ~~~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~l 157 (391)
..+...|+.++|+++++++|+++|+++.+. .+.+||+||+++++++|++|+++|+++|++|+|+++|+++|++++|
T Consensus 11 ~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 86 (517)
T 3r44_A 11 DDDKMKNIGWMLRQRATVSPRLQAYVEPST----DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFY 86 (517)
T ss_dssp -CGGGGCHHHHHHHHHHHSTTSEEEEEGGG----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcccccCHHHHHHHHHHhCCCCeEEEeCCc----CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHH
Confidence 345567999999999999999999998651 2589999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc--CccEEEEecCcchHHHHHHhhCCceEEe
Q psy2417 158 GAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR--CLKKIISIREVRMATMQRARSRAIEIIR 235 (391)
Q Consensus 158 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~--~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (391)
||+++|+++||++|.++.+++.+++++++++++|++... ...+...... ....++.+... ..
T Consensus 87 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~ 150 (517)
T 3r44_A 87 GAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPS-APVIDAIRAQADPPGTVTDWIGA---------------DS 150 (517)
T ss_dssp HHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGG-HHHHHHHHHSSSCCTTCCEEEEH---------------HH
T ss_pred HHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCch-HHHHHHHHhccCCccEEEEccCc---------------cc
Confidence 999999999999999999999999999999999998752 2222111110 11111111110 01
Q ss_pred HHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHH
Q psy2417 236 FDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLER 315 (391)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 315 (391)
+.+...... ...+.....+++++||+|||||||.||||+++|+++.+.+......++ +.++|++++.+|++|++++
T Consensus 151 ~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~---~~~~d~~l~~~p~~~~~~~ 226 (517)
T 3r44_A 151 LAERLRSAA-ADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTID---VRYRDRLLLPLPMFHVAAL 226 (517)
T ss_dssp HHHHHHHCC-CCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSC---CCTTCEEEECSCTTSHHHH
T ss_pred HHHHhhccC-cCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcC---CCCCCEEEEeCchHHHHHH
Confidence 222222211 112234457899999999999999999999999999999998888887 9999999999999999999
Q ss_pred HHHHHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHH-HHHhcCchhHHHHHHHHHHHH
Q psy2417 316 TCESAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDK-VMAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 316 ~~~~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~-~~~~~~~~slr~~~~gga~~~ 384 (391)
...+.+++.|+++++.+. ++..+++.+.++++|++.++|++++.+.+. .....++++||.+++||+...
T Consensus 227 ~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~ 297 (517)
T 3r44_A 227 TTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMP 297 (517)
T ss_dssp HHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCC
T ss_pred HHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCC
Confidence 987666669999999876 999999999999999999999999999876 345667889999999887653
No 3
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=8.8e-43 Score=348.20 Aligned_cols=283 Identities=21% Similarity=0.246 Sum_probs=237.0
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeec--CCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHH
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQN--ISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGA 159 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~--~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~ 159 (391)
..|+.++|+++++++||++|+++.+. .++..+++||+||+++++++|++|+++|+++|++|+|+++|+++|++++|||
T Consensus 18 ~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~ 97 (549)
T 3g7s_A 18 KISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYAL 97 (549)
T ss_dssp CCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 56899999999999999999998763 1233478999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc-CccEEEEecCcchHHHHHHhhCCceEEeHHH
Q psy2417 160 YCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR-CLKKIISIREVRMATMQRARSRAIEIIRFDE 238 (391)
Q Consensus 160 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (391)
+++|+++||++|.++.+++.+++++++++++|++... ...+...... .++.++.++.. ...+++
T Consensus 98 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 162 (549)
T 3g7s_A 98 WRVAATPVPINPMYKSFELEHILNDSEATTLVVHSML-YENFKPVLEKTGVERVFVVGGE--------------VNSLSE 162 (549)
T ss_dssp HHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGG-HHHHHHHHTTSCCCEEEEETCS--------------SSCHHH
T ss_pred HHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHH-HHHHHHHHhhCCCcEEEEeCCC--------------CcCHHH
Confidence 9999999999999999999999999999999998863 3333332222 45566666532 124555
Q ss_pred HHHhhhccCCCCCCCC-CCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHH
Q psy2417 239 IERVGAQKMFEEVPPK-PTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTC 317 (391)
Q Consensus 239 l~~~~~~~~~~~~~~~-~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~ 317 (391)
+...+.... ...... +++++||+|||||||.||||+++|+++.+.+......++ +.++|++++.+|++|++++..
T Consensus 163 ~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~---~~~~d~~~~~~p~~~~~~~~~ 238 (549)
T 3g7s_A 163 VMDSGSEDF-ENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATG---LSHMDTIVGCMPMFHSAEFGL 238 (549)
T ss_dssp HHHHSCSCC-CCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHC---CCTTCEEECCSCTTSHHHHHH
T ss_pred HHhcCcccc-ccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcC---CCCCCEEEEeCcHHHHHHHHH
Confidence 555433322 222233 389999999999999999999999999999998888888 999999999999999999988
Q ss_pred HHHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHh---cCchhHHHHHHHHHHH
Q psy2417 318 ESAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQ---IRPSFIKRLMFNMAMG 383 (391)
Q Consensus 318 ~~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~---~~~~slr~~~~gga~~ 383 (391)
.+.++..|+++++.+. ++..+++.|+++++|+++++|+++..|.+..... .+++++|.+++||++.
T Consensus 239 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l 308 (549)
T 3g7s_A 239 VNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPV 308 (549)
T ss_dssp HTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCC
T ss_pred HHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccC
Confidence 8889999999999876 9999999999999999999999999999875432 5677888888888644
No 4
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=3.8e-43 Score=350.03 Aligned_cols=278 Identities=19% Similarity=0.194 Sum_probs=231.7
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
..|+.++|+++++++||++|+.+.+ +++||+||+++++++|++|+++|+++|++|+|+++|+++|++++|||++
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 97 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCGN------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFR 97 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeCC------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHH
Confidence 4689999999999999999999866 7999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcc-------hhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEE
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSK-------CNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEII 234 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-------~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (391)
+|+++||++|.++.+++.+++++++++++|++.... ...+....+ .++.++..+.... +.
T Consensus 98 ~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------------~~ 164 (539)
T 1mdb_A 98 LGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLP-TLKNIIVAGEAEE------------FL 164 (539)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCT-TCCCEEEESCCTT------------SE
T ss_pred cCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCC-CccEEEEcCCccc------------hh
Confidence 999999999999999999999999999999987521 112222222 4455555443110 01
Q ss_pred eHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHH
Q psy2417 235 RFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLE 314 (391)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 314 (391)
.+ ..... .........+++++||+|||||||.||||+++|+++++.+......++ +.++|++++.+|++|+++
T Consensus 165 ~~---~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~---~~~~d~~l~~~p~~h~~~ 237 (539)
T 1mdb_A 165 PL---EDLHT-EPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCW---LDHSTVYLAALPMAHNYP 237 (539)
T ss_dssp EG---GGCCC-CCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHT---CCTTCEEEECSCTTSHHH
T ss_pred hh---hhccc-cccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhC---CCCCCEEEEeecccccch
Confidence 11 11001 111123356899999999999999999999999999999988888887 899999999999999999
Q ss_pred HHH--HHHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH-HhcCchhHHHHHHHHHHHHH
Q psy2417 315 RTC--ESAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM-AQIRPSFIKRLMFNMAMGSK 385 (391)
Q Consensus 315 ~~~--~~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~-~~~~~~slr~~~~gga~~~k 385 (391)
+.. .+.+|+.|+++++.+. ++..+++.|+++++|++.++|+++..+++... ...++++||.+++||+...+
T Consensus 238 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~ 312 (539)
T 1mdb_A 238 LSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSA 312 (539)
T ss_dssp HHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCH
T ss_pred hhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCH
Confidence 985 6899999999999876 99999999999999999999999999988743 45678899999999886544
No 5
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=1.3e-42 Score=343.84 Aligned_cols=277 Identities=23% Similarity=0.268 Sum_probs=225.2
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
..|+.++|+++++++||++|+.+.+ +.+||+||+++++++|++|+++|+++|++|+|+++|+++|++++|||++
T Consensus 5 ~~tl~~~l~~~a~~~pd~~Al~~~~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 78 (509)
T 3ivr_A 5 DFTLADVYRRNAALFPDRTAFMVDG------VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVAL 78 (509)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHCCCceEEEECC------cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 5689999999999999999999866 7999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc--CccEEEEecCcchHHHHHHhhCCceEEeHHHH
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR--CLKKIISIREVRMATMQRARSRAIEIIRFDEI 239 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~--~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (391)
+|+++||++|.++.+++.+++++++++++|++... ...+...... .++.++.++.... .+..+
T Consensus 79 ~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~--- 143 (509)
T 3ivr_A 79 IGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDY-RDIVAGVLPSLGGVKKAYAIGDGSG-----------PFAPF--- 143 (509)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTT-HHHHHHHGGGCSSCCEEEESSCCCS-----------SCEEG---
T ss_pred hCCEEEecCCCCCHHHHHHHHHhcCceEEEECcch-hhhHHhhhcccCCceEEEEcCCCCc-----------ChhhH---
Confidence 99999999999999999999999999999999863 2222222221 5566666654210 01111
Q ss_pred HHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHH
Q psy2417 240 ERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCES 319 (391)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~ 319 (391)
...............++|++||+|||||||.||||+++|+++.+.+......++ +.++|++++.+|++|++++...+
T Consensus 144 ~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~---~~~~d~~l~~~p~~~~~g~~~~~ 220 (509)
T 3ivr_A 144 KDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWR---LTEADVNLGMLPLFHVTGLGLML 220 (509)
T ss_dssp GGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTT---CCTTCEEEECSCTTSHHHHHHHH
T ss_pred hhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhC---CCCCcEEEEeCCCcchhHHHHHH
Confidence 110111111223457899999999999999999999999999999999888887 99999999999999999999887
Q ss_pred HHHHhCcEEEEe-CCCHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q psy2417 320 AMFLVGGSIGYY-SGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMG 383 (391)
Q Consensus 320 ~~L~~G~~vv~~-~~~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~ 383 (391)
.+++.|++.++. ..++..+++.|+++++|+++++|+++..+++.. ...+++++|.++.+|+..
T Consensus 221 ~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~-~~~~l~~lr~~~~~g~~~ 284 (509)
T 3ivr_A 221 TLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA-APAQLASLRAVTGLDTPE 284 (509)
T ss_dssp HHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC-CGGGGTTCCEEEEECCHH
T ss_pred HHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc-cccchhhhheecccCChH
Confidence 655555555544 449999999999999999999999999998764 344566788777777663
No 6
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=5.2e-43 Score=348.86 Aligned_cols=290 Identities=22% Similarity=0.290 Sum_probs=236.4
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHH
Q psy2417 78 LYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQ 157 (391)
Q Consensus 78 ~~~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~l 157 (391)
+.+...|+.++|+++++++||++|+++.+. .+++||+||+++++++|++|+++|+++|++|+|+++|+++|++++|
T Consensus 17 ~~p~~~~l~~~l~~~a~~~p~~~a~~~~~~----~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 92 (536)
T 3ni2_A 17 YIPKNLPLHSYVLENLSNHSSKPCLINGAN----GDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFL 92 (536)
T ss_dssp CCCSSCCHHHHHTTTGGGSTTSEEEEETTT----CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHhhcCCCceEEEECCC----CCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence 345567999999999999999999988531 2789999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc-CccEEEEecCcchHHHHHHhhCCceEEeH
Q psy2417 158 GAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR-CLKKIISIREVRMATMQRARSRAIEIIRF 236 (391)
Q Consensus 158 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (391)
||+++|+++||++|.++.+++.+++++++++++|++... ...+.+.... .+ .++.++... .....+
T Consensus 93 a~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~-~~~~~~~~~~~~~-~~~~~~~~~-----------~~~~~~ 159 (536)
T 3ni2_A 93 GASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACY-YEKVKDFARESDV-KVMCVDSAP-----------DGCLHF 159 (536)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGG-THHHHHHHHHHTC-EEEESSCCC-----------TTCEET
T ss_pred HHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHH-HHHHHHHHhhcCc-eEEEecCCC-----------CCccCH
Confidence 999999999999999999999999999999999998753 3333222211 22 345554321 123456
Q ss_pred HHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCC-CCCCCCEEEEcCChHHHHHH
Q psy2417 237 DEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDH-RPKYSDVLISFLPLAHMLER 315 (391)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~g~ 315 (391)
+++....... .+.....++|++||+|||||||.||||+++|+++++.+.......... .+.++|++++.+|++|++++
T Consensus 160 ~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~ 238 (536)
T 3ni2_A 160 SELTQADENE-APQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYAL 238 (536)
T ss_dssp HHHHTSCGGG-CCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHH
T ss_pred HHHhhccccc-cccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHH
Confidence 6655433222 233446789999999999999999999999999998877665422111 27889999999999999999
Q ss_pred HHH-HHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHH
Q psy2417 316 TCE-SAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLMFNMAMGSK 385 (391)
Q Consensus 316 ~~~-~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~~gga~~~k 385 (391)
... +.+|..|+++++.+. ++..+++.++++++|++.++|+++..+.+.. ....++++||.+++||+...+
T Consensus 239 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~ 311 (536)
T 3ni2_A 239 NSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGK 311 (536)
T ss_dssp HHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCH
T ss_pred HHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCH
Confidence 765 889999999999876 9999999999999999999999999998763 355678899999999876543
No 7
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=2.1e-42 Score=342.05 Aligned_cols=272 Identities=17% Similarity=0.221 Sum_probs=219.7
Q ss_pred CCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhc
Q psy2417 83 KTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCY 162 (391)
Q Consensus 83 ~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~ 162 (391)
.|+.++|+++++++||++|+.+.+. .+++||+||+++++++|++|+++|+++|++|+|+++|+++|++++|||+++
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~----~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 77 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPAR----GLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRL 77 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTT----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCC----CceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence 5799999999999999999998621 178999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEccCCCCHHHHHHHHHhcCccEEEE--cCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHH
Q psy2417 163 SMIIVALYDTLGPDACAFIINQAEISVLIV--DDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIE 240 (391)
Q Consensus 163 G~~~vpl~~~~~~~~l~~il~~~~~~~vi~--~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (391)
|+++||++|.++.+++.+++++++++++++ +... ...+..... .++ ++ .++++.
T Consensus 78 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~-~~~~~~~~~-~~~-~~---------------------~~~~~~ 133 (504)
T 1t5h_X 78 GAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV-ADAIFQSGS-GAR-II---------------------FLGDLV 133 (504)
T ss_dssp TCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CH-HHHHHHHCC-CCE-EE---------------------EGGGTE
T ss_pred CcEEEecCCccChHHHHHHHhhcCCcEEEEecchhh-hhhhhhccc-cce-eE---------------------Eecchh
Confidence 999999999999999999999999999999 5531 222212222 222 22 222221
Q ss_pred Hhhh----ccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCC--CCCCEEEEcCChHHHHH
Q psy2417 241 RVGA----QKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRP--KYSDVLISFLPLAHMLE 314 (391)
Q Consensus 241 ~~~~----~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~--~~~d~~l~~~pl~h~~g 314 (391)
..+. ..........+++++||+|||||||.||||+++|+++.+.+......++ + .++|++++.+|++|++|
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~g 210 (504)
T 1t5h_X 134 RDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVG---LRHGRHNVVLGLMPLYHVVG 210 (504)
T ss_dssp ETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTC---CCSSTTCEEEECSCTTSHHH
T ss_pred hcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhC---CCCCCCceEEeecchhhcch
Confidence 1110 0011113346799999999999999999999999999999888777776 6 78999999999999999
Q ss_pred HHH-HHHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-H--HhcCchhHHHHHHHHHHHHH
Q psy2417 315 RTC-ESAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-M--AQIRPSFIKRLMFNMAMGSK 385 (391)
Q Consensus 315 ~~~-~~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~--~~~~~~slr~~~~gga~~~k 385 (391)
+.. .+.+|+.|+++++.+. ++..+++.|+++++|+++++|++++.|.+.. . ...++++||.+++||+....
T Consensus 211 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~ 286 (504)
T 1t5h_X 211 FFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPD 286 (504)
T ss_dssp HTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCH
T ss_pred HHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCH
Confidence 854 5899999999999876 9999999999999999999999999998864 2 33467899999999886543
No 8
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=2.5e-42 Score=344.21 Aligned_cols=283 Identities=22% Similarity=0.254 Sum_probs=230.9
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
..|+.++|+++++++||++|+.+.+ ++..+++||+||+++++++|++|+++|+++|++|+|+++|+++|++++|||++
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~~--~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 94 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRLH--TGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPG 94 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEECT--TSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEEec--CCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHh
Confidence 4689999999999999999998632 12237899999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc--CccEEEEecCcchHHHHHHhhCCceEEeHHHH
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR--CLKKIISIREVRMATMQRARSRAIEIIRFDEI 239 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~--~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (391)
+|+++||++|.++.+++.+++++++++++|++... ...+...... .++.++.++..... ....++++
T Consensus 95 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 163 (541)
T 1v25_A 95 MGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNL-LPLVEAIRGELKTVQHFVVMDEKAPE----------GYLAYEEA 163 (541)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGG-HHHHHHHGGGCSSCCEEEESSSCCCT----------TCEEHHHH
T ss_pred cCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhH-HHHHHHHHhhCCCccEEEEecCCCCc----------ccccHHHH
Confidence 99999999999999999999999999999998752 2222222111 45567766543210 12345554
Q ss_pred HHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHH--HHhhcCCCCCCCCEEEEcCChHHHHHHHH
Q psy2417 240 ERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAA--LLQLSDHRPKYSDVLISFLPLAHMLERTC 317 (391)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~~~~d~~l~~~pl~h~~g~~~ 317 (391)
..... ......++++++|+|||||||.||||+++|+++++..... ...++ +.++|++++.+|++|++++..
T Consensus 164 ~~~~~----~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~---~~~~d~~l~~~p~~h~~~~~~ 236 (541)
T 1v25_A 164 LGEEA----DPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTA---LSEKDVVLPVVPMFHVNAWCL 236 (541)
T ss_dssp CCSCC----CCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTC---CCTTCEEEECSCTTSHHHHTH
T ss_pred hhccC----CcccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhccccc---CCCCCEEEEeccchhhhHHHH
Confidence 32111 1133467899999999999999999999999998776542 23344 789999999999999999977
Q ss_pred HHHHHHhCcEEEEeCC--CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH-HhcCchhHHHHHHHHHHHH
Q psy2417 318 ESAMFLVGGSIGYYSG--DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM-AQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 318 ~~~~L~~G~~vv~~~~--~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~-~~~~~~slr~~~~gga~~~ 384 (391)
.+.+++.|+++++.+. ++..+++.++++++|+++++|+++..|.+... ...++++||.+++||+...
T Consensus 237 ~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~ 306 (541)
T 1v25_A 237 PYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAP 306 (541)
T ss_dssp HHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCC
T ss_pred HHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCC
Confidence 7899999999999864 89999999999999999999999999988743 4567789999998887654
No 9
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=2.5e-42 Score=345.01 Aligned_cols=291 Identities=15% Similarity=0.139 Sum_probs=231.0
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
..|+.++|+++++++|+++|++.... +...+.+||+||+++++++|++|+++|+++|++|+|+++|+++|++++|||++
T Consensus 19 ~~tl~~~l~~~a~~~p~~~a~~a~~~-~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 97 (550)
T 3rix_A 19 DGTAGEQLHKAMKRYALVPGTIAFTD-AHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALF 97 (550)
T ss_dssp CSCHHHHHHHHHHHHHTSTTCEEEEE-TTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCCceEEEeee-cCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHH
Confidence 46999999999999999999762211 11237899999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHh---hcccCccEEEEecCcchHHHHHHhhCCceEEeHHH
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIID---RAPRCLKKIISIREVRMATMQRARSRAIEIIRFDE 238 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~---~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (391)
+|+++||+++.++.+++.+++++++++++|++... ...+.. ..+ .++.++.++.... ......+.+
T Consensus 98 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~---------~~~~~~~~~ 166 (550)
T 3rix_A 98 IGVAVAPANDIYNERELLNSMNISQPTVVFVSKKG-LQKILNVQKKLP-IIQKIIIMDSKTD---------YQGFQSMYT 166 (550)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGG-HHHHHHHHHHCT-TCCEEEETTCSSC---------BTTBCBHHH
T ss_pred cCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHH-HHHHHHHHhhCC-CcceEEEEcCCcc---------ccCcccHHH
Confidence 99999999999999999999999999999998863 333322 222 5667777665321 112345666
Q ss_pred HHHhhhccCC-----CC-CCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHH
Q psy2417 239 IERVGAQKMF-----EE-VPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHM 312 (391)
Q Consensus 239 l~~~~~~~~~-----~~-~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 312 (391)
+......... .+ ....++++++|+|||||||.||||+++|+++++.+......+....+.++|++++.+|++|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~ 246 (550)
T 3rix_A 167 FVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHG 246 (550)
T ss_dssp HHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSH
T ss_pred HhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHH
Confidence 6544332111 11 12245789999999999999999999999999887766554211127889999999999999
Q ss_pred HHHHHHHHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHH-HHHhcCchhHHHHHHHHHHHH
Q psy2417 313 LERTCESAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDK-VMAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 313 ~g~~~~~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~-~~~~~~~~slr~~~~gga~~~ 384 (391)
+|+...+.+++.|+++++.+. ++..+++.|+++++|+++++|+++..+.+. .....++++||.+++||+...
T Consensus 247 ~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~ 320 (550)
T 3rix_A 247 FGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLS 320 (550)
T ss_dssp HHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCC
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCC
Confidence 999888999999999999866 999999999999999999999999999887 345667889999999987653
No 10
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=5.5e-43 Score=380.71 Aligned_cols=319 Identities=18% Similarity=0.182 Sum_probs=245.3
Q ss_pred hhhhhccccchhhhhhhhccccccccc----------------CCCCccCccCcccc------cCCCCCcceeccCCCCC
Q psy2417 27 QNLALVGTNETMRLRFYYQSDRSSNLR----------------GRGREVVRVSKFFS------GASEGKFLSTLYDDVKT 84 (391)
Q Consensus 27 l~~~~~~~~~~l~~~~~y~~~~~~~~~----------------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~t 84 (391)
|++.+ ..++++.++|+|++++|++.+ ..+.......++.. .....+....+.+ ..+
T Consensus 388 L~l~~-~~~~~l~~~~~y~~~lf~~~~i~~l~~~~~~lL~~l~~~p~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~-~~~ 465 (1304)
T 2vsq_A 388 LNLMA-SPGDEMLIKLAYNENVFDEAFILRLKSQLLTAIQQLIQNPDQPVSTINLVDDREREFLLTGLNPPAQAHE-TKP 465 (1304)
T ss_dssp EEEEE-ECSSSCEEEEEEETTTSCHHHHHHHHHHHHHHHHHHHHSTTSBGGGCCCCCHHHHHHHHTTTSCCCCCCC-CCC
T ss_pred eEEEE-ecCCcEEEEEEECCccCCHHHHHHHHHHHHHHHHHhccCccccccccCCCCHHHHHHHHHhcCCCCCCCC-CCC
Confidence 66654 457889999999999999976 22222222222211 0111111112222 368
Q ss_pred HHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcCC
Q psy2417 85 LYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSM 164 (391)
Q Consensus 85 l~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~ 164 (391)
++++|+++++++||++|+.+.+ +.+||+||+++++++|++|+++|+++|++|+|+++|++++++++|||+++|+
T Consensus 466 l~~~~~~~~~~~p~~~Av~~~~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~ 539 (1304)
T 2vsq_A 466 LTYWFKEAVNANPDAPALTYSG------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGA 539 (1304)
T ss_dssp HHHHHHHHHHHCTTSEEEESSS------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCCeEEEECC------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999876 7999999999999999999999999999999999999999999999999999
Q ss_pred eEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHHHhhh
Q psy2417 165 IIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGA 244 (391)
Q Consensus 165 ~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 244 (391)
++|||||.+|.+++.++++++++++++++... . ......+ ....++.+++... ...
T Consensus 540 ~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~-~-~~~~~~~-~~~~~~~~~~~~~---------------------~~~ 595 (1304)
T 2vsq_A 540 AYLPVDPKLPEDRISYMLADSAAACLLTHQEM-K-EQAAELP-YTGTTLFIDDQTR---------------------FEE 595 (1304)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTCCEEEECSTT-C-TTSTTCC-CCSEEEESSCGGG---------------------GGS
T ss_pred EEEEECCCCHHHHHHHHHHHcCCCEEEECcch-h-hhhhccC-CCCcEEEeccccc---------------------ccc
Confidence 99999999999999999999999999998752 1 1111111 1223333332110 000
Q ss_pred ccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHh
Q psy2417 245 QKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLV 324 (391)
Q Consensus 245 ~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~ 324 (391)
..........++++|||+|||||||+||||+++|+++.+. .+....++ ++++|+++++.|++|+.+....+.+|+.
T Consensus 596 ~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~---~~~~d~~l~~~~~~fd~~~~~~~~~l~~ 671 (1304)
T 2vsq_A 596 QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMA---FSDQDTFLSVSNYAFDAFTFDFYASMLN 671 (1304)
T ss_dssp CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSC---CCTTCEEEECSCTTSTHHHHHHHHHHTT
T ss_pred ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcC---CCCCCEEEEECCccHHHHHHHHHHHHHc
Confidence 1111223457899999999999999999999999999876 33333444 8899999999999999999888999999
Q ss_pred CcEEEEeCC----CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q psy2417 325 GGSIGYYSG----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMG 383 (391)
Q Consensus 325 G~~vv~~~~----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~ 383 (391)
|+++++.+. ++..+.+.|.++++|+++++|++++.+.+.. ...+++||.+++||+..
T Consensus 672 G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~--~~~~~~lr~~~~gGe~l 732 (1304)
T 2vsq_A 672 AARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG--EDWMKGLRCILFGGERA 732 (1304)
T ss_dssp TCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC--SHHHHTCSEEEEESSCC
T ss_pred CCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc--hhcCCCccEEEEecCCC
Confidence 999999864 8999999999999999999999999997641 12245778788887643
No 11
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=1.2e-41 Score=341.79 Aligned_cols=291 Identities=14% Similarity=0.125 Sum_probs=235.2
Q ss_pred CCCCCH-HHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHH
Q psy2417 80 DDVKTL-YDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQG 158 (391)
Q Consensus 80 ~~~~tl-~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA 158 (391)
+...++ +++|+++++++||++|+.+.+. ++..+.+||+||+++++++|.+|+++|+++||+|+|+++|+++|++++||
T Consensus 52 ~~~~n~~~~~l~~~a~~~pd~~Al~~~~~-~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA 130 (580)
T 3etc_A 52 PENFNFAYDVVDVYARDSPEKLAMIWCDD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLG 130 (580)
T ss_dssp CSSCCHHHHTHHHHHHHCTTCEEEEEEES-SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHH
T ss_pred cccchHHHHHHHHHHhhCCCCEEEEEEcC-CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 334444 5999999999999999998653 23458999999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcch-h---HHHhhcccCc-cEEEEecCcchHHHHHHhhCCceE
Q psy2417 159 AYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKC-N---QIIDRAPRCL-KKIISIREVRMATMQRARSRAIEI 233 (391)
Q Consensus 159 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~-~---~~~~~~~~~l-~~ii~~~~~~~~~~~~~~~~~~~~ 233 (391)
|+++|+++||+++.++.+++.+++++++++++|++.+... . .+....+ .+ ..++.++... ...+
T Consensus 131 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----------~~~~ 199 (580)
T 3etc_A 131 LHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECG-DIPLKKAKVGGDV----------LEGW 199 (580)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHC-SCCCEEEEESSSC----------CTTC
T ss_pred HHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCC-CcceEEEEeCCcc----------cccc
Confidence 9999999999999999999999999999999999876421 2 2222222 33 4555555421 1124
Q ss_pred EeHHHHHHhhhccCCCC---CCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChH
Q psy2417 234 IRFDEIERVGAQKMFEE---VPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLA 310 (391)
Q Consensus 234 ~~~~~l~~~~~~~~~~~---~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 310 (391)
..+.+...........+ ....++|+++|+|||||||.||||+++|.++++.+.......+ +.+++++++.+|++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 276 (580)
T 3etc_A 200 IDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQN---VEDDGLHYTVADSG 276 (580)
T ss_dssp EEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSC---CCTTCEEEECCCTT
T ss_pred ccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhC---CCCCceEEEeCChH
Confidence 56766655433322112 2457899999999999999999999999999988776665555 88999999999999
Q ss_pred HHHHHHHH-HHHHHhCcEEEEeC---CCHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Q psy2417 311 HMLERTCE-SAMFLVGGSIGYYS---GDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMGSK 385 (391)
Q Consensus 311 h~~g~~~~-~~~L~~G~~vv~~~---~~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~~k 385 (391)
|+.+++.. +.++..|+++++.+ .++..+++.|+++++|+++++|++++.|.+......++++||.+++||++...
T Consensus 277 ~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~l~~lr~i~~gGe~l~~ 355 (580)
T 3etc_A 277 WGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYNFSTLKYAVVAGEPLNP 355 (580)
T ss_dssp STHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC---CCTTCCEEEECSSCCCH
T ss_pred HHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcccccCCCccceEEEEccCCCCH
Confidence 99998875 88999999999873 28999999999999999999999999998764445677899999998876543
No 12
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=4.3e-42 Score=349.50 Aligned_cols=295 Identities=15% Similarity=0.208 Sum_probs=234.6
Q ss_pred CCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhc
Q psy2417 83 KTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCY 162 (391)
Q Consensus 83 ~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~ 162 (391)
.++.++|+++++++||++|+++.+..++..+.+||+||+++++++|++|+++|+++|++|+|+++|++++++++|||+++
T Consensus 76 n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 155 (652)
T 1pg4_A 76 NLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARI 155 (652)
T ss_dssp CHHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHc
Confidence 46889999999999999999985432234589999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcc-----------hhHHHhhcc-cCccEEEEecCcchHHHHHHhhCC
Q psy2417 163 SMIIVALYDTLGPDACAFIINQAEISVLIVDDDSK-----------CNQIIDRAP-RCLKKIISIREVRMATMQRARSRA 230 (391)
Q Consensus 163 G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----------~~~~~~~~~-~~l~~ii~~~~~~~~~~~~~~~~~ 230 (391)
|++++|+++.++.+++.++++++++++||++.... ....+.... ..++.++.++...... ....
T Consensus 156 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~----~~~~ 231 (652)
T 1pg4_A 156 GAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI----DWQE 231 (652)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCC----CCCB
T ss_pred CcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcc----cccC
Confidence 99999999999999999999999999999987521 111222111 1356777765421100 0000
Q ss_pred ceEEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHH-HHHHhhcCCCCCCCCEEEEcCCh
Q psy2417 231 IEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAIS-AALLQLSDHRPKYSDVLISFLPL 309 (391)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~~~~d~~l~~~pl 309 (391)
.....|+++...... ...+....+++++||+|||||||.||||+++|++++..+. .....++ +.++|++++++|+
T Consensus 232 ~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~---~~~~d~~l~~~~~ 307 (652)
T 1pg4_A 232 GRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFD---YHPGDIYWCTADV 307 (652)
T ss_dssp TTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTT---CCTTCEEEECSCT
T ss_pred CCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcC---CCCCCEEEEccCC
Confidence 123567777643221 1122344689999999999999999999999999987764 3444566 8899999999999
Q ss_pred HHHHHHHHH-HHHHHhCcEEEEeCC-----CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH---HhcCchhHHHHHHHH
Q psy2417 310 AHMLERTCE-SAMFLVGGSIGYYSG-----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM---AQIRPSFIKRLMFNM 380 (391)
Q Consensus 310 ~h~~g~~~~-~~~L~~G~~vv~~~~-----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~---~~~~~~slr~~~~gg 380 (391)
+|++|+... +.+|+.|+++++.+. ++..+++.|+++++|+++++|++++.|.+... ...++++||.+++||
T Consensus 308 ~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gG 387 (652)
T 1pg4_A 308 GWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVG 387 (652)
T ss_dssp TSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEES
T ss_pred eeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEec
Confidence 999999554 899999999999863 78999999999999999999999999987632 345678999999888
Q ss_pred HHHHH
Q psy2417 381 AMGSK 385 (391)
Q Consensus 381 a~~~k 385 (391)
+....
T Consensus 388 e~l~~ 392 (652)
T 1pg4_A 388 EPINP 392 (652)
T ss_dssp SCCCH
T ss_pred CCCCH
Confidence 76543
No 13
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=4.4e-42 Score=346.99 Aligned_cols=262 Identities=17% Similarity=0.098 Sum_probs=217.9
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHH
Q psy2417 81 DVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAY 160 (391)
Q Consensus 81 ~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~ 160 (391)
...|++++|+++++++||++|+.+.+ +.+||+||+++++++|++|+++|+++|++|+|+++|+++|++++|||+
T Consensus 25 ~~~tl~~~~~~~a~~~Pd~~Av~~~~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lail 98 (620)
T 4dg8_A 25 AHPTVVARFSEMAALHPHREAIRDRF------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAIL 98 (620)
T ss_dssp GSCCHHHHHHHHHHHCTTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCeEEEcCC------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 35699999999999999999999877 799999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHH
Q psy2417 161 CYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIE 240 (391)
Q Consensus 161 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (391)
++|+++||+||.++.+++.+++++++++++++...... . .. .+..+ .+.. .
T Consensus 99 kaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~-~-~~----~~~~~-~~~~---------------------~- 149 (620)
T 4dg8_A 99 LSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPT-P-AN----GLPCV-PVRH---------------------L- 149 (620)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCC-C-CT----TSCEE-EGGG---------------------C-
T ss_pred HhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccc-c-cc----CCcee-eecc---------------------C-
Confidence 99999999999999999999999999999997664210 0 00 11111 0000 0
Q ss_pred HhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHH
Q psy2417 241 RVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESA 320 (391)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~ 320 (391)
.............+++++||+|||||||.||||+++|+++.+.+.. ...++ +.++|++++++|++|++++...+.
T Consensus 150 -~~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~---~~~~d~~l~~~p~~~~~~~~~~~~ 224 (620)
T 4dg8_A 150 -PAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLA---FAPQMRFLVNSPLSFDAATLEIWG 224 (620)
T ss_dssp -CCCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGT---TCTTCEEEECSCTTSTHHHHHHHH
T ss_pred -CcCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhC---CCCCCEEEEECccCHHHHHHHHHH
Confidence 0000011112346899999999999999999999999999887655 34455 889999999999999999999999
Q ss_pred HHHhCcEEEEeCC---CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q psy2417 321 MFLVGGSIGYYSG---DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 321 ~L~~G~~vv~~~~---~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~~ 384 (391)
+|+.|+++++.+. ++..+++.|+++++|+++++|++++.+.+. ...++++||.+++||+...
T Consensus 225 ~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~--~~~~l~~lr~v~~gGe~l~ 289 (620)
T 4dg8_A 225 ALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDL--DPDCLGGLRQLLTGGDILS 289 (620)
T ss_dssp HHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHH--CGGGGTTCSEEEEESSCCC
T ss_pred HHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhc--ChhhCCCccEEEEEeCcCC
Confidence 9999999999742 899999999999999999999999999764 2345678898888887543
No 14
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=3e-41 Score=341.50 Aligned_cols=279 Identities=16% Similarity=0.159 Sum_probs=231.5
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHH
Q psy2417 80 DDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGA 159 (391)
Q Consensus 80 ~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~ 159 (391)
....|+.++|+++++ ||++|+.+.+ +.+||+||+++++++|++|+++|+++|++|+|+++|++++++++|||
T Consensus 24 ~~~~~l~~~~~~~a~--pd~~Av~~~~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~ 95 (617)
T 3rg2_A 24 WQDLPLTDILTRHAA--SDSIAVIDGE------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFAL 95 (617)
T ss_dssp CCCCCTTHHHHTTTT--CCSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred CCcCCHHHHHHHhhC--CCCeEEecCC------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHH
Confidence 456789999999988 9999999877 79999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcc-------hhHHHhhcccCccEEEEecCcchHHHHHHhhCCce
Q psy2417 160 YCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSK-------CNQIIDRAPRCLKKIISIREVRMATMQRARSRAIE 232 (391)
Q Consensus 160 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-------~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (391)
+++|+++||+++.++.+++.++++++++++++++.... ...+..... .++.+..++....
T Consensus 96 l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------------ 162 (617)
T 3rg2_A 96 LKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHS-SIRVVQLLNDSGE------------ 162 (617)
T ss_dssp HHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHST-TCCEEEEETCCST------------
T ss_pred HhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCC-ccceeeecccccc------------
Confidence 99999999999999999999999999999999987632 111122222 4455555543221
Q ss_pred EEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHH
Q psy2417 233 IIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHM 312 (391)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 312 (391)
..+.+....... .....+..++++|||+|||||||.||||+++|+++.+.+......++ +.++|++++++|++|.
T Consensus 163 -~~~~~~~~~~~~-~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~---~~~~~~~l~~~p~~~~ 237 (617)
T 3rg2_A 163 -HNLQDAINHPAE-DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQ---FTQQTRYLCAIPAAHN 237 (617)
T ss_dssp -TBHHHHHHSCCS-SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHT---CCTTCEEEECSCTTSH
T ss_pred -cchhhhhccccc-ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcC---CCCcceEEEeccchhh
Confidence 122333222111 11223456899999999999999999999999999999999888888 9999999999999999
Q ss_pred HHHHH--HHHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHh---cCchhHHHHHHHHHHHH
Q psy2417 313 LERTC--ESAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQ---IRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 313 ~g~~~--~~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~---~~~~slr~~~~gga~~~ 384 (391)
+++.. .+.+|+.|+++++.+. ++..+++.++++++|++.++|+++..+.+..... .++++||.+++||+...
T Consensus 238 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~ 315 (617)
T 3rg2_A 238 YAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLS 315 (617)
T ss_dssp HHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCC
T ss_pred hhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCC
Confidence 99875 5899999999999865 8999999999999999999999999998875432 25778998888887653
No 15
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=1e-41 Score=346.99 Aligned_cols=296 Identities=17% Similarity=0.179 Sum_probs=235.1
Q ss_pred CCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHH-hCCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 83 KTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLL-GLGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 83 ~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
.++.++|+++++++||++|+++.+...+..+++||+||+++++++|++|+ ++|+++||+|+|+++|++|+++++|||++
T Consensus 82 n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~ 161 (663)
T 1ry2_A 82 NACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISR 161 (663)
T ss_dssp CHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 57889999999999999999986432234589999999999999999999 99999999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcch--------hHHHhhccc--CccEEEEecCcchHHHHHHhhCCc
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKC--------NQIIDRAPR--CLKKIISIREVRMATMQRARSRAI 231 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~--------~~~~~~~~~--~l~~ii~~~~~~~~~~~~~~~~~~ 231 (391)
+|++++|+++.++.+++.++++++++++||++..... ..+.+.... .++.+++++...... ......
T Consensus 162 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~---~~~~~~ 238 (663)
T 1ry2_A 162 IGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPS---VAFHAP 238 (663)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSS---CCCCSS
T ss_pred cCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCc---cccCCC
Confidence 9999999999999999999999999999999875311 111122211 456777775421100 000011
Q ss_pred eEEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHH-HHHhhcCCCCCCCCEEEEcCChH
Q psy2417 232 EIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISA-ALLQLSDHRPKYSDVLISFLPLA 310 (391)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~~~~~d~~l~~~pl~ 310 (391)
....|+++...... ...+.+..+++++||+|||||||.||||+++|++++..... ....+. +.++|++++.+|++
T Consensus 239 ~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~---~~~~d~~~~~~~~~ 314 (663)
T 1ry2_A 239 RDLDWATEKKKYKT-YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFD---THQEDVFFTAGDIG 314 (663)
T ss_dssp SEEEHHHHHTTSCS-CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSC---CCSSCEEEECSCTT
T ss_pred ccccHHHHHhhcCC-CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcC---CCCCcEEEEcCCcH
Confidence 24567776543221 11233456899999999999999999999999999877643 344566 88999999999999
Q ss_pred HHHHHHHH-HHHHHhCcEEEEeCC-----CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH---HhcCchhHHHHHHHHH
Q psy2417 311 HMLERTCE-SAMFLVGGSIGYYSG-----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM---AQIRPSFIKRLMFNMA 381 (391)
Q Consensus 311 h~~g~~~~-~~~L~~G~~vv~~~~-----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~---~~~~~~slr~~~~gga 381 (391)
|++|+... +.+|+.|+++++.+. ++..+++.|++++||+++++|++++.|.+... ...++++||.+++||+
T Consensus 315 ~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe 394 (663)
T 1ry2_A 315 WITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGE 394 (663)
T ss_dssp SHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSS
T ss_pred HhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcC
Confidence 99999554 899999999999863 78899999999999999999999999976522 3456789999998887
Q ss_pred HHHH
Q psy2417 382 MGSK 385 (391)
Q Consensus 382 ~~~k 385 (391)
+...
T Consensus 395 ~l~~ 398 (663)
T 1ry2_A 395 PIAA 398 (663)
T ss_dssp CCCH
T ss_pred CCCH
Confidence 6544
No 16
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=8.7e-42 Score=338.17 Aligned_cols=266 Identities=16% Similarity=0.175 Sum_probs=226.0
Q ss_pred CCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhC-CCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 83 KTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGL-GVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 83 ~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
.++.++|+++++++||++|+.+.+ +++||+||+++++++|++|.+. |.++|++|+++++|+++|++++|||++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~~------~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~ 74 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQG------QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVK 74 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETT------EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcCC------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHH
Confidence 378999999999999999999876 7999999999999999999985 888999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHHH
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIER 241 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 241 (391)
+|+++||+++.++.+++.+++++++++++|++.......+ . ..+..+.++++..
T Consensus 75 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~----~----------------------~~~~~~~~~~~~~ 128 (511)
T 3e7w_A 75 AGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAV----G----------------------QQIQTVSAEELLE 128 (511)
T ss_dssp HTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCC----C----------------------CSSCEEEHHHHHT
T ss_pred hCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhc----c----------------------cccceecHhhhhc
Confidence 9999999999999999999999999999999765311110 0 0122345555544
Q ss_pred hhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHH
Q psy2417 242 VGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAM 321 (391)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~ 321 (391)
.............++++++|+|||||||.||||+++|+++.+.+......++ +.++|++++++|++|++++...+.+
T Consensus 129 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~---~~~~d~~l~~~p~~~~~~~~~~~~~ 205 (511)
T 3e7w_A 129 NEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFP---VSGGKIFLNQAPFSFDLSVMDLYPC 205 (511)
T ss_dssp SCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHST---TTTTCEEEECSCTTSTHHHHHHHHH
T ss_pred cccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcC---CCccceEEEeCCccHHHHHHHHHHH
Confidence 3222222223456899999999999999999999999999999998888887 8999999999999999999888999
Q ss_pred HHhCcEEEEeCC----CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHHHHHHHH
Q psy2417 322 FLVGGSIGYYSG----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLMFNMAMG 383 (391)
Q Consensus 322 L~~G~~vv~~~~----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~~gga~~ 383 (391)
|..|+++++.+. ++..+++.++++++|++.++|+++..+++.. ....+++++|.+++||+..
T Consensus 206 l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l 272 (511)
T 3e7w_A 206 LQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVL 272 (511)
T ss_dssp HHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCC
T ss_pred HhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCC
Confidence 999999999764 7899999999999999999999999988753 2344567888888888654
No 17
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=1e-41 Score=335.11 Aligned_cols=275 Identities=18% Similarity=0.183 Sum_probs=217.5
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeec---CCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHH
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQN---ISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQG 158 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~---~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA 158 (391)
..|+.++|+++++++||++|+++.+. .++..+++||+||+++++++|++|+++|+ +|++|+|+++|+++|++++||
T Consensus 23 ~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA 101 (480)
T 3t5a_A 23 VRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLG 101 (480)
T ss_dssp -CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHH
T ss_pred cccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHH
Confidence 56899999999999999999998762 12234799999999999999999999996 999999999999999999999
Q ss_pred HHhcCCeEEEccC---CCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc----CccEEEEecCcchHHHHHHhhCCc
Q psy2417 159 AYCYSMIIVALYD---TLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR----CLKKIISIREVRMATMQRARSRAI 231 (391)
Q Consensus 159 ~~~~G~~~vpl~~---~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~----~l~~ii~~~~~~~~~~~~~~~~~~ 231 (391)
|+++|+++||+++ .++.+++.+++++++++++|++... ...+.+.... ....++.++...
T Consensus 102 ~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 168 (480)
T 3t5a_A 102 ALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSA-VDDVVQHVARRPGESPPSIIEVDLLD------------ 168 (480)
T ss_dssp HHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTT-HHHHHHTCC------CCEEEEGGGSC------------
T ss_pred HHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhH-HHHHHHHHhccccccccceeEecccc------------
Confidence 9999999999999 8889999999999999999999863 3333332221 111333332211
Q ss_pred eEEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCC------CCEEEE
Q psy2417 232 EIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKY------SDVLIS 305 (391)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~------~d~~l~ 305 (391)
. ............+++++||+|||||||.||||+++|+++++.+......+. +.. +|++++
T Consensus 169 ---------~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~---~~~~~~~~~~d~~l~ 235 (480)
T 3t5a_A 169 ---------L-DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYF---ADTDGIPPPNSALVS 235 (480)
T ss_dssp ---------T-TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHC---TTTTTCCCTTEEEEE
T ss_pred ---------c-ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhc---cccccCCCCCCeEEE
Confidence 0 001111223456889999999999999999999999999999988888776 666 999999
Q ss_pred cCChHHHHHHHHH-HHHHHhCcEEEEeCC-----CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-----HHhcCchhHH
Q psy2417 306 FLPLAHMLERTCE-SAMFLVGGSIGYYSG-----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-----MAQIRPSFIK 374 (391)
Q Consensus 306 ~~pl~h~~g~~~~-~~~L~~G~~vv~~~~-----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-----~~~~~~~slr 374 (391)
++|++|++|+... +.+|+.|+++++.+. ++..+++.++++++| +..+|+++..++... ....++++||
T Consensus 236 ~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr 314 (480)
T 3t5a_A 236 WLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNIL 314 (480)
T ss_dssp CCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCC
T ss_pred eCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhh
Confidence 9999999998765 899999999999863 889999999999999 889999988887642 2345678999
Q ss_pred HHHHHHHHHH
Q psy2417 375 RLMFNMAMGS 384 (391)
Q Consensus 375 ~~~~gga~~~ 384 (391)
.+++||+...
T Consensus 315 ~i~~gG~~l~ 324 (480)
T 3t5a_A 315 TILSGSERVQ 324 (480)
T ss_dssp EEEECCTTCC
T ss_pred eeeecCCcCC
Confidence 9999987653
No 18
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.2e-41 Score=337.39 Aligned_cols=268 Identities=18% Similarity=0.194 Sum_probs=220.5
Q ss_pred CCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhc
Q psy2417 83 KTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCY 162 (391)
Q Consensus 83 ~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~ 162 (391)
.|+.++|+++++++||++|+.+.+ +++||+||+++++++|++|.++|+++|++|+|+++|+++|++++|||+++
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~ 74 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWRD------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKA 74 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHCCCceEEEeCC------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 378999999999999999999877 79999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHHHh
Q psy2417 163 SMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERV 242 (391)
Q Consensus 163 G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (391)
|+++||+++.++.+++.++++++++++++++....... . . ..++..+ .+.++...
T Consensus 75 G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~----~--~-~~~~~~~------------------~~~~~~~~ 129 (512)
T 3fce_A 75 GHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD----L--P-VRIVSED------------------NLKDIFFT 129 (512)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC----C--S-SEEEETH------------------HHHHHHHH
T ss_pred CCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc----c--c-cceechh------------------hhhhhccc
Confidence 99999999999999999999999999999986531110 0 0 0111111 01111111
Q ss_pred hhc-cCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHH
Q psy2417 243 GAQ-KMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAM 321 (391)
Q Consensus 243 ~~~-~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~ 321 (391)
... .........++++++|+|||||||.||||+++|+++.+.+......++ +.++|++++++|++|++++...+.+
T Consensus 130 ~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~---~~~~d~~l~~~p~~~~~~~~~~~~~ 206 (512)
T 3fce_A 130 HKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFN---LQTGQVFLNQAPFSFDLSVMDIYPS 206 (512)
T ss_dssp TTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTT---CCSSCEEEECSCTTSGGGHHHHHHH
T ss_pred ccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcC---CCCCCEEEEeCCccHhHHHHHHHHH
Confidence 111 111223457899999999999999999999999999999998888887 8999999999999999999888999
Q ss_pred HHhCcEEEEeCC----CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHHHHHHHHH
Q psy2417 322 FLVGGSIGYYSG----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 322 L~~G~~vv~~~~----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~~gga~~~ 384 (391)
++.|+++++.+. ++..+++.++++++|++.++|+++..++... ....+++++|.+++||+...
T Consensus 207 l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~ 274 (512)
T 3fce_A 207 LVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLP 274 (512)
T ss_dssp HHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCC
T ss_pred HhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCC
Confidence 999999999874 8899999999999999999999999987653 34456778998888887653
No 19
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=1.5e-41 Score=340.66 Aligned_cols=265 Identities=18% Similarity=0.168 Sum_probs=218.6
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHH
Q psy2417 80 DDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGA 159 (391)
Q Consensus 80 ~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~ 159 (391)
+...+++++|+++++++||++|+.+.+ +.+||+||+++++++|++|+++|+++|++|+|+++|+++|++++|||
T Consensus 72 ~~~~~l~~~l~~~a~~~pd~~A~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~ 145 (570)
T 4gr5_A 72 PAGACVHELFEAQAARAPDAVALLHEA------DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAV 145 (570)
T ss_dssp CCSCCHHHHHHHHHHHCTTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHCCCCeEEECCC------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 345799999999999999999999876 79999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHH
Q psy2417 160 YCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEI 239 (391)
Q Consensus 160 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (391)
+++|+++||++|.++.+++.+++++++++++|++... . .... ....++..+...
T Consensus 146 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~-~----~~~~-~~~~~~~~~~~~-------------------- 199 (570)
T 4gr5_A 146 LKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPL-S----GRLT-GTTTLYVEDEAA-------------------- 199 (570)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTT-T----TSSC-SSEEEECCC-----------------------
T ss_pred HHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchh-h----hccc-CCcceeeecccc--------------------
Confidence 9999999999999999999999999999999998752 1 1111 222222211100
Q ss_pred HHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHH
Q psy2417 240 ERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCES 319 (391)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~ 319 (391)
.............++|+++|+|||||||.||||+++|+++.+.... ...++ +.++|++++++|++|+.+....+
T Consensus 200 --~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~---~~~~d~~l~~~p~~~~~~~~~~~ 273 (570)
T 4gr5_A 200 --SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAG---FGPDEVFLQCSPVSWDAFGLELF 273 (570)
T ss_dssp ------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSC---CSTTCEEEECSCTTSSTHHHHHH
T ss_pred --ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcC---CCCCCEEEEecCccHHHHHHHHH
Confidence 0011111223457899999999999999999999999999876544 22333 88999999999999988888889
Q ss_pred HHHHhCcEEEEeCC---CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q psy2417 320 AMFLVGGSIGYYSG---DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 320 ~~L~~G~~vv~~~~---~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~~ 384 (391)
.+|+.|+++++.+. ++..+++.|+++++|++.++|++++.|.+... .++++||.+++||+...
T Consensus 274 ~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~~lr~~~~gG~~l~ 339 (570)
T 4gr5_A 274 GALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP--EAFEGVRYAITGGEPAS 339 (570)
T ss_dssp HHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG--GGGTTCSEEEEESSCCC
T ss_pred HHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch--hhCCCceEEEEecccCC
Confidence 99999999999763 89999999999999999999999999987532 34678888888887543
No 20
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=4.6e-41 Score=336.42 Aligned_cols=267 Identities=19% Similarity=0.211 Sum_probs=216.9
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHH
Q psy2417 80 DDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGA 159 (391)
Q Consensus 80 ~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~ 159 (391)
+...++.++|+++++++||++|+.+.+ +++||+||+++++++|++|.++|+++|++|+|+++|+++|++++|||
T Consensus 36 ~~~~~l~~~l~~~a~~~p~~~Al~~~~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 109 (563)
T 1amu_A 36 PRDKTIHQLFEEQVSKRPNNVAIVCEN------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAV 109 (563)
T ss_dssp CTTCCHHHHHHHHHHHCTTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHCCCCeEEEeCC------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 445689999999999999999999866 79999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHH
Q psy2417 160 YCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEI 239 (391)
Q Consensus 160 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (391)
+++|+++||+++.++.+++.+++++++++++|++.. ......... ....++.++... +
T Consensus 110 ~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~--~~~~~~~~~-~~~~~~~~~~~~-------------------~ 167 (563)
T 1amu_A 110 LKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKH--LVHLIHNIQ-FNGQVEIFEEDT-------------------I 167 (563)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGG--GHHHHTTSC-CCSEEEECCCST-------------------T
T ss_pred HHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCc--hhhhhhhcc-ccCceeeecchh-------------------h
Confidence 999999999999999999999999999999999875 222222221 111233332210 0
Q ss_pred HHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHH
Q psy2417 240 ERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCES 319 (391)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~ 319 (391)
. .........+..++|+++|+|||||||.||||+++|+++.+.+......++ +.++|++++++|++|++++...+
T Consensus 168 ~--~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~---~~~~d~~l~~~p~~~~~~~~~~~ 242 (563)
T 1amu_A 168 K--IREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLN---VTEKDRIGQFASISFDASVWEMF 242 (563)
T ss_dssp T--TSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSC---CCTTCEEEECSCTTSTHHHHHHH
T ss_pred c--cccCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcC---CCCCCEEEEeCCccHHHHHHHHH
Confidence 0 000111123456789999999999999999999999999998888777777 89999999999999999998889
Q ss_pred HHHHhCcEEEEeCC----CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q psy2417 320 AMFLVGGSIGYYSG----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 320 ~~L~~G~~vv~~~~----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~~ 384 (391)
.+|+.|+++++.+. ++..+++.+.++++|++.++|+++..+.. .++++||.+++||+...
T Consensus 243 ~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~-----~~~~~lr~~~~gG~~l~ 306 (563)
T 1amu_A 243 MALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP-----ERILSIQTLITAGSATS 306 (563)
T ss_dssp HHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT-----TTCCSCSEEEEESSCCC
T ss_pred HHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh-----cccccccEEEEEEecCC
Confidence 99999999999764 88999999999999999999999987753 24567888888877543
No 21
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=3.5e-41 Score=357.79 Aligned_cols=296 Identities=21% Similarity=0.270 Sum_probs=235.8
Q ss_pred eccCCCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHH
Q psy2417 77 TLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITE 156 (391)
Q Consensus 77 ~~~~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~ 156 (391)
.+.+...|++++|+++++++||++|+++.+. .+++||+||+++++++|++|+++|+++|++|+|+++|+++|++++
T Consensus 55 ~~~p~~~tl~~~l~~~a~~~pd~~Al~~~~~----~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~ 130 (979)
T 3tsy_A 55 IYIPNHLSLHDYIFQNISEFATKPCLINGPT----GHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSF 130 (979)
T ss_dssp CCCCTTSCHHHHHTTTGGGTTTSEEEEETTT----CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHhCCCCeEEEECCC----CcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHH
Confidence 4455678999999999999999999998531 178999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeH
Q psy2417 157 QGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRF 236 (391)
Q Consensus 157 lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (391)
|||+++|+++||++|.++.+++.+++++++++++|++... ...+..........++.++..... ........+
T Consensus 131 lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 203 (979)
T 3tsy_A 131 LAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARY-VDKIKPLQNDDGVVIVCIDDNESV------PIPEGCLRF 203 (979)
T ss_dssp HHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTT-TTTSHHHHHTSCCEEEECCCCTTS------CCCTTEEEG
T ss_pred HHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHH-HHHHHHHhhcCCceEEEeCCcccc------cCCcccccH
Confidence 9999999999999999999999999999999999998763 222222111112234555432110 011124455
Q ss_pred HHHHHhhhc--cCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCC-CCCCCCEEEEcCChHHHH
Q psy2417 237 DEIERVGAQ--KMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDH-RPKYSDVLISFLPLAHML 313 (391)
Q Consensus 237 ~~l~~~~~~--~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~ 313 (391)
+++...... .........++|++||+|||||||.||||+++|+++++.+.......... .+.++|++++.+|++|++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~ 283 (979)
T 3tsy_A 204 TELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIY 283 (979)
T ss_dssp GGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHH
T ss_pred HHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHH
Confidence 554332221 11123446789999999999999999999999999999887665432111 278899999999999999
Q ss_pred HHHHH-HHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHHHHHHHH
Q psy2417 314 ERTCE-SAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLMFNMAMG 383 (391)
Q Consensus 314 g~~~~-~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~~gga~~ 383 (391)
++... +.+|..|+++++.+. ++..+++.++++++|++.++|+++..+.+.. ....++++||.+++||++.
T Consensus 284 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l 356 (979)
T 3tsy_A 284 ALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPL 356 (979)
T ss_dssp HHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCC
T ss_pred HHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCC
Confidence 99765 789999999999876 9999999999999999999999999998763 4556788999999888764
No 22
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=6.9e-41 Score=334.30 Aligned_cols=284 Identities=15% Similarity=0.159 Sum_probs=227.8
Q ss_pred CCCHHH-HHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHH
Q psy2417 82 VKTLYD-AFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAY 160 (391)
Q Consensus 82 ~~tl~~-~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~ 160 (391)
..|+.+ ++.++++++ |++|+++.+. .+.+||+||+++++++|++|+++|+++|++|+|+++|+++|++++|||+
T Consensus 24 ~~~l~~~~l~~~~~~~-~~~A~~~~~~----~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~ 98 (548)
T 2d1s_A 24 SAGTQLRKYMERYAKL-GAIAFTNAVT----GVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGL 98 (548)
T ss_dssp CHHHHHHHHHHHHHHH-TCEEEEETTT----CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHH
T ss_pred cCcHHHHHHHhhhccc-CCceEEEcCC----CCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHH
Confidence 358999 899999999 9999987321 1789999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc--CccEEEEecCcchHHHHHHhhCCceEEeHHH
Q psy2417 161 CYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR--CLKKIISIREVRMATMQRARSRAIEIIRFDE 238 (391)
Q Consensus 161 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~--~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (391)
++|+++||+++.++.+++.+++++++++++|++... ...+...... ....++.++.... ...+..|++
T Consensus 99 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 168 (548)
T 2d1s_A 99 FIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKG-LDKVITVQKTVTTIKTIVILDSKVD---------YRGYQCLDT 168 (548)
T ss_dssp HHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTT-HHHHHHHHHHSTTCCEEEETTCSSC---------BTTBCBHHH
T ss_pred hhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHH-HHHHHHHhcCCCCCCEEEEeCCccc---------ccccccHHH
Confidence 999999999999999999999999999999999863 3333221111 2455666654210 001234666
Q ss_pred HHHhhhccCCCCCCCC-----C-CCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHh---hcCCCCCCCCEEEEcCCh
Q psy2417 239 IERVGAQKMFEEVPPK-----P-TDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQ---LSDHRPKYSDVLISFLPL 309 (391)
Q Consensus 239 l~~~~~~~~~~~~~~~-----~-~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~~~~d~~l~~~pl 309 (391)
+...+........... + +++++|+|||||||.||||+++|+++.+.+...... ++ +.++|++++++|+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~---~~~~d~~l~~~p~ 245 (548)
T 2d1s_A 169 FIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQ---VSPGTAVLTVVPF 245 (548)
T ss_dssp HHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCC---CCTTCEEEECSCT
T ss_pred HHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccC---CCccceEEEeccH
Confidence 6544321101111111 3 899999999999999999999999999988777665 44 7889999999999
Q ss_pred HHHHHHHHH-HHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHHHHHHHHH
Q psy2417 310 AHMLERTCE-SAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 310 ~h~~g~~~~-~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~~gga~~~ 384 (391)
+|++++... +.++ .|+++++.+. ++..+++.|+++++|+++++|++++.|.+.. ....++++||.+++||+...
T Consensus 246 ~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~ 322 (548)
T 2d1s_A 246 HHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLS 322 (548)
T ss_dssp TSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCC
T ss_pred HHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCC
Confidence 999999875 5666 9999999875 9999999999999999999999999998763 34457789999998887654
No 23
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=3.1e-40 Score=330.86 Aligned_cols=284 Identities=13% Similarity=0.151 Sum_probs=227.9
Q ss_pred CCHHHHHHHHHHh-----cCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhC-CCCCCCeEEEEccCCHHHHHHH
Q psy2417 83 KTLYDAFRKGAKE-----SNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGL-GVNPGSFVGIYSQNCPEWIITE 156 (391)
Q Consensus 83 ~tl~~~l~~~~~~-----~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~~~~s~e~i~~~ 156 (391)
.++.++|+++++. +||++|+.+.+. ++..+++||+||+++++++|++|+++ |+++|++|+|+++|+++|++++
T Consensus 38 ~~~~~~l~~~a~~~~a~~~p~~~al~~~~~-~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~ 116 (570)
T 3c5e_A 38 NFASDVLDHWADMEKAGKRPPSPALWWVNG-KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVI 116 (570)
T ss_dssp CHHHHTHHHHHHHHHTTSSCCCEEEEEECS-SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHH
T ss_pred cHHHHHHHHHHhhccccCCCCceEEEEEcC-CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHH
Confidence 4568999999999 999999998542 12247899999999999999999999 9999999999999999999999
Q ss_pred HHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc--CccEEEEecCcchHHHHHHhhCCceEE
Q psy2417 157 QGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR--CLKKIISIREVRMATMQRARSRAIEII 234 (391)
Q Consensus 157 lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~--~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (391)
|||+++|+++||+++.++.+++.+++++++++++|++... ...+...... .++.++.++.... ..+.
T Consensus 117 lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 185 (570)
T 3c5e_A 117 LGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEV-IQEVDTVASECPSLRIKLLVSEKSC----------DGWL 185 (570)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTT-HHHHHHHGGGCTTCCEEEEESSSCC----------TTSE
T ss_pred HHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHH-HHHHHHHhhcCCceeEEEEecccCc----------cccc
Confidence 9999999999999999999999999999999999998763 3333222111 4556666654211 0134
Q ss_pred eHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHH--HHHHHHHhhcCCCCCCCCEEEEcCChHHH
Q psy2417 235 RFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIA--AISAALLQLSDHRPKYSDVLISFLPLAHM 312 (391)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~--~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 312 (391)
.++++....... .......++++++|+|||||||.||||+++|+ ++. ..... ..++ +.++|++++.+|++|+
T Consensus 186 ~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~---~~~~d~~~~~~p~~~~ 259 (570)
T 3c5e_A 186 NFKKLLNEASTT-HHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTG---LQASDIMWTISDTGWI 259 (570)
T ss_dssp EHHHHHHHSCSC-CCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTS---CCTTCEEEECCCTTSH
T ss_pred cHHHHhhccccc-ccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcC---CCCCceEEEcCchHHH
Confidence 566665433221 12234568999999999999999999999999 544 33333 4455 8899999999999999
Q ss_pred HHHHHH-HHHHHhCcEEEEeC---CCHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q psy2417 313 LERTCE-SAMFLVGGSIGYYS---GDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 313 ~g~~~~-~~~L~~G~~vv~~~---~~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~~ 384 (391)
+++... +.+|..|+++++.+ .++..+++.|+++++|+++++|++++.+.+......++++||.+++||+...
T Consensus 260 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe~l~ 335 (570)
T 3c5e_A 260 LNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLL 335 (570)
T ss_dssp HHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCTTTCCCTTCCEEEEESSCCC
T ss_pred HHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccccccccccceEEEEcCCcCC
Confidence 999854 89999999999985 3899999999999999999999999999875333446778888888887653
No 24
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=2.4e-40 Score=328.60 Aligned_cols=266 Identities=17% Similarity=0.181 Sum_probs=221.2
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
..++.++|+++++++||++|+.+.+ +.+||+||+++++++|++|.++|+++|++|+|+++|+++|++++|||++
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~ 76 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCLG------ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTK 76 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcceecCC------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 4589999999999999999999877 7899999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHHH
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIER 241 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 241 (391)
+|+++||+++.++.+++.+++++++++++|++.+.. .. .. ++.+..+.++..
T Consensus 77 ~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~--~~---~~-----------------------~~~~~~~~~~~~ 128 (521)
T 3l8c_A 77 SGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFP--LT---IE-----------------------GISLVSLSEIES 128 (521)
T ss_dssp TTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCC--SC---CT-----------------------TSEEEEHHHHHH
T ss_pred hCCEEEecCccccHHHHHHHHHhCCCCEEEecCccc--cc---cc-----------------------cCcccchhhhhh
Confidence 999999999999999999999999999999987521 00 00 122344444433
Q ss_pred hhhcc--CCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHh--hcCCCCCCCCEEEEcCChHHHHHHHH
Q psy2417 242 VGAQK--MFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQ--LSDHRPKYSDVLISFLPLAHMLERTC 317 (391)
Q Consensus 242 ~~~~~--~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~--~~~~~~~~~d~~l~~~pl~h~~g~~~ 317 (391)
..... ........++++++|+|||||||.||||+++|+++.+.+...... +. +..++++++..|++|++++..
T Consensus 129 ~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~ 205 (521)
T 3l8c_A 129 AKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFD---VPKQPQMLAQPPYSFDLSVMY 205 (521)
T ss_dssp HHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTC---CCSSCEEECCSCTTSGGGHHH
T ss_pred cccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccC---CCCCCeEEecCCccHHHHHHH
Confidence 22211 112234578999999999999999999999999999988776665 44 788999999999999999988
Q ss_pred HHHHHHhCcEEEEeCC----CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHHHHHHHHH
Q psy2417 318 ESAMFLVGGSIGYYSG----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 318 ~~~~L~~G~~vv~~~~----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~~gga~~~ 384 (391)
.+.++..|+++++.+. ++..+++.+.++++|++.++|+++..+.... ....++++||.+++||+...
T Consensus 206 ~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~ 277 (521)
T 3l8c_A 206 WAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELT 277 (521)
T ss_dssp HHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCC
T ss_pred HHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCC
Confidence 8999999999998764 8899999999999999999999999887652 23455678888888887543
No 25
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1e-40 Score=329.70 Aligned_cols=283 Identities=16% Similarity=0.141 Sum_probs=214.8
Q ss_pred CHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcC
Q psy2417 84 TLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYS 163 (391)
Q Consensus 84 tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G 163 (391)
|+.++|+++++++||++|+.+.+ +++||+||+++++++|++|+++ +|++|+|+++|+++|++++|||+++|
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~~~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~G 72 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITDGQ------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLAN 72 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEECSS------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhcCCceEEEeCC------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 56789999999999999999876 7999999999999999999987 89999999999999999999999999
Q ss_pred CeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcc-cCccEEEEecCcchHHHHHHhhCCceEE-eHHHHHH
Q psy2417 164 MIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAP-RCLKKIISIREVRMATMQRARSRAIEII-RFDEIER 241 (391)
Q Consensus 164 ~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~-~~l~~ii~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 241 (391)
+++||+++.++.+++.+++++++++++|++.... ........ ..++.+.......... ......... ..+....
T Consensus 73 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 148 (501)
T 3ipl_A 73 IEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLE-LRGFQIVSLDDIEFAGRDITTNGLL---DNTMGIQYDTSNETVVP 148 (501)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCC-CTTSEEEETTC----------------------------------
T ss_pred CEEEecCccCCHHHHHHHHHhcCCCEEEEccccc-cccccccccccceeeeeeccccccc---ccccccccccchhhccc
Confidence 9999999999999999999999999999987631 11100000 0111111100000000 000000000 0011111
Q ss_pred hhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHH
Q psy2417 242 VGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAM 321 (391)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~ 321 (391)
.............+++++||+|||||||.||||+++|+++.+.+......++ +.++|++++.+|++|++|+...+.+
T Consensus 149 ~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~---~~~~d~~l~~~p~~~~~g~~~~~~~ 225 (501)
T 3ipl_A 149 KESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLG---FDRDTNWLSVLPIYHISGLSVLLRA 225 (501)
T ss_dssp -CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTC---CCTTCEEEECSCTTSHHHHHHHHHH
T ss_pred cCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhC---CCccCEEEEeCcHHHHHHHHHHHHH
Confidence 1111111123457899999999999999999999999999999998888887 8999999999999999999988999
Q ss_pred HHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q psy2417 322 FLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 322 L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~~ 384 (391)
++.|+++++.+. ++..+++.++++++|+++++|++++.|.+.... ...+||.+++||+...
T Consensus 226 l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~lr~i~~gG~~l~ 287 (501)
T 3ipl_A 226 VIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH--EPYNLQKILLGGAKLS 287 (501)
T ss_dssp HHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC--SCTTCCEEEECSSCCC
T ss_pred HHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC--CcCcccEEEEeCCCCC
Confidence 999999999876 999999999999999999999999999876321 1127777777776543
No 26
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=2.9e-40 Score=332.85 Aligned_cols=282 Identities=18% Similarity=0.177 Sum_probs=226.4
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHH
Q psy2417 80 DDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGA 159 (391)
Q Consensus 80 ~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~ 159 (391)
....|+.++|+++++++||++|+.+.+ ++..+++||+||+++++++|++|+++|+++|++|+|+++|++++++++|||
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~~--~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~ 85 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFLN--KELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGC 85 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEEE--TTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEEc--CCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHH
Confidence 345799999999999999999999865 222489999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEccCCC---CHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeH
Q psy2417 160 YCYSMIIVALYDTL---GPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRF 236 (391)
Q Consensus 160 ~~~G~~~vpl~~~~---~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (391)
+++|+++||++|.+ +.+++.++++++++++++++... ...+..........+ ..+.++..
T Consensus 86 ~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~----------------~~~~~~~~ 148 (590)
T 3kxw_A 86 LYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADH-IKKFTADELNTNPKF----------------LKIPAIAL 148 (590)
T ss_dssp HHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHH-HHHHCC-----CCEE----------------TTEEEEEG
T ss_pred HHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHH-HHHHHHhhhhhcccc----------------cccceeec
Confidence 99999999999998 45789999999999999998752 222211110000000 00111122
Q ss_pred HHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHH
Q psy2417 237 DEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERT 316 (391)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~ 316 (391)
+++.... .....+....+++++||+|||||||.||||+++|+++++.+......++ +.++|++++++|++|++|+.
T Consensus 149 ~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~---~~~~d~~l~~~p~~h~~g~~ 224 (590)
T 3kxw_A 149 ESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFH---MNDETIIFSWLPPHHDMGLI 224 (590)
T ss_dssp GGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTT---CCTTCEEEECSCTTSHHHHH
T ss_pred hhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhC---CCCcCeEEEecCCCcchhhH
Confidence 1111111 1111234567899999999999999999999999999999999888888 99999999999999999998
Q ss_pred H-HHHHHHhCcEEEEeCC-----CHHhHHHHHHhcCCcEEecChHHHHHHHHHH----HHhcCchhHHHHHHHHHHHH
Q psy2417 317 C-ESAMFLVGGSIGYYSG-----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV----MAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 317 ~-~~~~L~~G~~vv~~~~-----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~----~~~~~~~slr~~~~gga~~~ 384 (391)
. .+.+++.|+++++.+. ++..+++.|+++++|++.++|.++..+.+.. ....++++||.+++||++..
T Consensus 225 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~ 302 (590)
T 3kxw_A 225 GCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVR 302 (590)
T ss_dssp TTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCC
T ss_pred HHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCC
Confidence 8 4899999999999764 7899999999999999999999999988752 23456788998888887653
No 27
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.2e-40 Score=329.28 Aligned_cols=272 Identities=19% Similarity=0.264 Sum_probs=217.9
Q ss_pred HHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcCCeE
Q psy2417 87 DAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMII 166 (391)
Q Consensus 87 ~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~ 166 (391)
++|++.++++|+++++...... .+++||+||+++++++|++|+++|+++|++|+|+++|+++|++++|||+++|+++
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~---~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~ 80 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAA---GDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVY 80 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETT---CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEE
T ss_pred hHHHHHHHhCCCCceEEEecCC---CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEE
Confidence 5788999999999999864321 1689999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCHHHHHHHHHhcCccEEEEcCCcc--hhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHHHhhh
Q psy2417 167 VALYDTLGPDACAFIINQAEISVLIVDDDSK--CNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGA 244 (391)
Q Consensus 167 vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~--~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 244 (391)
||++|.++.+++.+++++++++++|++.... ...+..... ..++.++..... .+.+... ..
T Consensus 81 vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------------~~~~~~~-~~ 143 (503)
T 4fuq_A 81 LPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVG---ATVETLGPDGRG-------------SLTDAAA-GA 143 (503)
T ss_dssp EECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHT---CEEEECCTTSCS-------------HHHHHHH-TS
T ss_pred EecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcC---ceEEEecCCccc-------------ccchhhh-cC
Confidence 9999999999999999999999999987521 122222111 134444332110 1111111 11
Q ss_pred ccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHH-HHHHH
Q psy2417 245 QKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCE-SAMFL 323 (391)
Q Consensus 245 ~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~-~~~L~ 323 (391)
..........++|++||+|||||||.||||+++|+++.+.+......++ +.++|++++.+|++|++|+... +.+++
T Consensus 144 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~---~~~~d~~~~~~p~~~~~g~~~~~~~~l~ 220 (503)
T 4fuq_A 144 SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWR---FTPDDVLIHALPIYHTHGLFVASNVTLF 220 (503)
T ss_dssp CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTT---CCTTCEEEECSCSSSHCCCCCCHHHHHH
T ss_pred CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhC---CCCCCEEEEeCChHHHHHHHHHHHHHHH
Confidence 1112233457899999999999999999999999999999999888888 9999999999999999997654 78999
Q ss_pred hCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH-HhcCchhHHHHHHHHHHH
Q psy2417 324 VGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM-AQIRPSFIKRLMFNMAMG 383 (391)
Q Consensus 324 ~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~-~~~~~~slr~~~~gga~~ 383 (391)
.|+++++.+. ++..+++.++ ++|+++++|+++..+++... ...+++++|.+++||+..
T Consensus 221 ~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l 280 (503)
T 4fuq_A 221 ARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPL 280 (503)
T ss_dssp TTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCC
T ss_pred hCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCC
Confidence 9999999876 9999999998 89999999999999987632 344567888888888754
No 28
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=2.4e-40 Score=329.20 Aligned_cols=283 Identities=18% Similarity=0.150 Sum_probs=215.4
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
..++.++|+++++ +||++|+++.+ +.+||+||+++++++|++|+++|+++|++|+|+++|+++|++++|||++
T Consensus 23 ~~~~~~~l~~~~~-~p~~~A~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~ 95 (529)
T 2v7b_A 23 FNFAAYLFRLNET-RAGKTAYIDDT------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALY 95 (529)
T ss_dssp CCHHHHHHHHTGG-GTTSEEEECSS------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHH
T ss_pred eeHHHHHHHhhhc-cCCceEEEeCC------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHH
Confidence 3468999999999 99999998765 6899999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcc--cCc-cEEEEecCcchHHHHHHhhCCceEEeHHH
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAP--RCL-KKIISIREVRMATMQRARSRAIEIIRFDE 238 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~--~~l-~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (391)
+|+++||+++.++.+++.+++++++++++|++... ...+..... ..+ ..++.++..... ......+++
T Consensus 96 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 166 (529)
T 2v7b_A 96 AGVVPVVANTLLTPADYVYMLTHSHARAVIASGAL-VQNVTQALESAEHDGCQLIVSQPRESE--------PRLAPLFEE 166 (529)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGG-HHHHHHHHHCC---CCEEEEECC--------------CCCBHHH
T ss_pred cCceEEecCcccCHHHHHHHHhccCCeEEEechhh-hhHHHHHHhhccccCceEEEecccccc--------cccccchhh
Confidence 99999999999999999999999999999998753 222222211 123 445554432110 001124556
Q ss_pred HHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHH-HHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHH
Q psy2417 239 IERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNV-IAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTC 317 (391)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l-~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~ 317 (391)
+...... ........++|++||+|||||||.||||+++|+++ .+........++ +.++|++++.+|++|++++..
T Consensus 167 ~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~---~~~~d~~~~~~p~~~~~g~~~ 242 (529)
T 2v7b_A 167 LIDAAAP-AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILG---IAENDVVFSAAKLFFAYGLGN 242 (529)
T ss_dssp HHHTSCC-CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCC---CCTTCEEEESSCTTSHHHHHH
T ss_pred hhccCCC-cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccC---CCCCcEEEEeecHHHHHHHHH
Confidence 5542221 11223457899999999999999999999999999 555444333444 789999999999999999987
Q ss_pred H-HHHHHhCcEEEEeC-C-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH-HhcCchhHHHHHHHHHHHH
Q psy2417 318 E-SAMFLVGGSIGYYS-G-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM-AQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 318 ~-~~~L~~G~~vv~~~-~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~-~~~~~~slr~~~~gga~~~ 384 (391)
. +.+|..|+++++.+ . ++..+++.+.++++|+++++|+++..+++... ......++|.+++||+...
T Consensus 243 ~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~ 313 (529)
T 2v7b_A 243 GLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALP 313 (529)
T ss_dssp HTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCC
T ss_pred HHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCC
Confidence 6 78999999999873 3 89999999999999999999999999876422 1111126777777776543
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=5.9e-39 Score=322.39 Aligned_cols=278 Identities=19% Similarity=0.189 Sum_probs=221.8
Q ss_pred cCCCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHH
Q psy2417 79 YDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQG 158 (391)
Q Consensus 79 ~~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA 158 (391)
.+...|+.++|+++++.+|+.+++.... +..+++||+||+++++++|++|+++|+++|++|+|+++|+++|++++||
T Consensus 17 ~~~~~tl~~~l~~~a~~~p~~~~~~~~~---~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 93 (576)
T 3gqw_A 17 YADFPTLVDALDYAALSSAGMNFYDRRC---QLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFA 93 (576)
T ss_dssp CSCCSSHHHHHHHHTTSSCEEEEECTTS---CEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHhhCCCCeEEeCCCC---CceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 3556799999999999999977764321 1237899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEEccCCCC-------HHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCc
Q psy2417 159 AYCYSMIIVALYDTLG-------PDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAI 231 (391)
Q Consensus 159 ~~~~G~~~vpl~~~~~-------~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~ 231 (391)
|+++|+++||+++.++ .+++.++++++++++++++.+. ...+..... ... ..
T Consensus 94 ~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~~-~~~-------------------~~ 152 (576)
T 3gqw_A 94 CQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEW-LPLVNAATH-DNP-------------------EL 152 (576)
T ss_dssp HHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGG-HHHHHHHGG-GCT-------------------TC
T ss_pred HHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHH-HHHHHHhhc-cCC-------------------cc
Confidence 9999999999999999 8999999999999999998752 222222111 110 11
Q ss_pred eEEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHh-hcCCCCCCCCEEEEcCChH
Q psy2417 232 EIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQ-LSDHRPKYSDVLISFLPLA 310 (391)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~-~~~~~~~~~d~~l~~~pl~ 310 (391)
.......... ............+++++||+|||||||.||||+++|+++++.+...... ++ +.++|++++++|++
T Consensus 153 ~~~~~~~~~~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~---~~~~d~~l~~~p~~ 228 (576)
T 3gqw_A 153 HVLSHAWFKA-LPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIK---LRPGDRCVSWLPFY 228 (576)
T ss_dssp EEEEHHHHHT-SCCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSC---CCTTCCEEECCCTT
T ss_pred eecchhhhhc-ccccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccC---CCCcceEEEcCCcc
Confidence 1122111111 1111112234568999999999999999999999999999988777654 55 89999999999999
Q ss_pred HHHHHHHH-HHHHHhCcEEEEeCC-----CHHhHHHHHHhcCCcEEecChHHHHHHHHH----HHHhcCchhHHHHHHHH
Q psy2417 311 HMLERTCE-SAMFLVGGSIGYYSG-----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDK----VMAQIRPSFIKRLMFNM 380 (391)
Q Consensus 311 h~~g~~~~-~~~L~~G~~vv~~~~-----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~----~~~~~~~~slr~~~~gg 380 (391)
|++|+... +.++..|+++++.+. ++..+++.++++++|+++++|+++..+.+. .....++++||.+++||
T Consensus 229 h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg 308 (576)
T 3gqw_A 229 HDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGA 308 (576)
T ss_dssp SHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECS
T ss_pred ccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccC
Confidence 99999876 788999999998763 788999999999999999999999887653 23455678888888888
Q ss_pred HHHH
Q psy2417 381 AMGS 384 (391)
Q Consensus 381 a~~~ 384 (391)
++..
T Consensus 309 ~~l~ 312 (576)
T 3gqw_A 309 EPIS 312 (576)
T ss_dssp SCCC
T ss_pred ccCC
Confidence 6643
No 30
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=8.8e-38 Score=312.98 Aligned_cols=283 Identities=14% Similarity=0.056 Sum_probs=214.9
Q ss_pred eccCCCCCHHHHHHHHHHhcCCCceEEEeecC----CCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHH
Q psy2417 77 TLYDDVKTLYDAFRKGAKESNNGRCLGWRQNI----SRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEW 152 (391)
Q Consensus 77 ~~~~~~~tl~~~l~~~~~~~pd~~al~~~~~~----~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~ 152 (391)
..+....|+.++|+++++++||++|+.+.+.. +...+.+||+||+++++++|++|.+.|+ +|++|+|+++|+++|
T Consensus 14 ~~~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~ 92 (562)
T 3ite_A 14 AQYTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIA 92 (562)
T ss_dssp ----CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHH
T ss_pred eeecccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHH
Confidence 34456679999999999999999999986520 1124789999999999999999999999 799999999999999
Q ss_pred HHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCce
Q psy2417 153 IITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIE 232 (391)
Q Consensus 153 i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (391)
++++|||+++|+++||+++.++.+++.+++++++++++|++... ...+ ... ....++..+..
T Consensus 93 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~-~~~~--~~~-~~~~~~~~~~~-------------- 154 (562)
T 3ite_A 93 FAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNN-FDGV--ELP-PETKVLDTKNQ-------------- 154 (562)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTT-TTTC--CCC-TTCEEEETTCH--------------
T ss_pred HHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccc-cccc--ccC-ccceeecccch--------------
Confidence 99999999999999999999999999999999999999998753 1111 001 11122221110
Q ss_pred EEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhc-----CCCCCCCCEEEEcC
Q psy2417 233 IIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLS-----DHRPKYSDVLISFL 307 (391)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~-----~~~~~~~d~~l~~~ 307 (391)
.+.+...... .........++++++|+|||||||.||||+++|+++.+.+......+. ...+...+++++..
T Consensus 155 --~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (562)
T 3ite_A 155 --SFIENLSTQD-TSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLA 231 (562)
T ss_dssp --HHHHHHHHSC-CSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCS
T ss_pred --hhhhhccccc-ccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEec
Confidence 1111111111 111123345788999999999999999999999999988776554321 00267889999999
Q ss_pred ChHHHHHHHHHHHHHHhCcEEEEeCC--CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q psy2417 308 PLAHMLERTCESAMFLVGGSIGYYSG--DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 308 pl~h~~g~~~~~~~L~~G~~vv~~~~--~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~~ 384 (391)
|++|++++...+.++..|+++++.+. .+..+.+.++++++|++.++|++++.+.. ...++++||.+++||+...
T Consensus 232 ~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~---~~~~~~~lr~~~~gG~~l~ 307 (562)
T 3ite_A 232 SRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL---VPEDAPHLVYLGVGGEKMT 307 (562)
T ss_dssp CTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTC---CGGGSTTCCEEEEESSCCC
T ss_pred CchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhccc---CccccCceEEEEEecCCCC
Confidence 99999999888999999999998764 46788999999999999999998876632 2346678888888887653
No 31
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=1.4e-38 Score=314.56 Aligned_cols=257 Identities=18% Similarity=0.216 Sum_probs=208.2
Q ss_pred CCCHHHHHHHHHHhcCC-CceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHH
Q psy2417 82 VKTLYDAFRKGAKESNN-GRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAY 160 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd-~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~ 160 (391)
..++.++|+++++++|+ ++|+.+.+ +.+||+||+++++++|.+|. .|++|+|+++|++++++++|||+
T Consensus 21 ~~tl~~~l~~~a~~~p~d~~Al~~~~------~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~ 89 (505)
T 3nyq_A 21 MSSLFPALSPAPTGAPADRPALRFGE------RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAAL 89 (505)
T ss_dssp ---CCTTTSSCCCSGGGGSEEEEETT------EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHhCCCCCeEEEECC------eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHH
Confidence 45788889989988887 99999876 89999999999999999885 37899999999999999999999
Q ss_pred hcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHH
Q psy2417 161 CYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIE 240 (391)
Q Consensus 161 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (391)
++|+++||++|.++.+++.+++++++++++|++.......... .+..+ .++..
T Consensus 90 ~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~----~~~~~-~~~~~---------------------- 142 (505)
T 3nyq_A 90 LAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPALG----ALERV-DVDVR---------------------- 142 (505)
T ss_dssp HHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCCGGGT----TSEEE-ECCTT----------------------
T ss_pred HhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccchhhc----ccccc-ccccc----------------------
Confidence 9999999999999999999999999999999987532221111 22221 11110
Q ss_pred HhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHH-H
Q psy2417 241 RVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCE-S 319 (391)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~-~ 319 (391)
...........+++++||+|||||||.||||+++|+++.+.+......++ +.++|++++.+|++|.+|+... +
T Consensus 143 ---~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~---~~~~d~~l~~~p~~~~~g~~~~~~ 216 (505)
T 3nyq_A 143 ---ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQ---WTGEDVLVQGLPLFHVHGLVLGIL 216 (505)
T ss_dssp ---CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHT---CCTTCEEEECCCTTSHHHHTTTTH
T ss_pred ---cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhC---CCCCcEEEEeccHHHHHHHHHHHH
Confidence 00111223457899999999999999999999999999999999888888 9999999999999999998765 8
Q ss_pred HHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHH----HHhcCchhHHHHHHHHHHH
Q psy2417 320 AMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV----MAQIRPSFIKRLMFNMAMG 383 (391)
Q Consensus 320 ~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~----~~~~~~~slr~~~~gga~~ 383 (391)
.+|..|+++++.+. ++..+++.+ ++++|+++++|+++..+.+.. ....+++++|.+++||+..
T Consensus 217 ~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l 284 (505)
T 3nyq_A 217 GPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAAL 284 (505)
T ss_dssp HHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCC
T ss_pred HHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCC
Confidence 99999999999865 899999999 889999999999999998742 2233455677777777554
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.85 E-value=7.3e-23 Score=193.00 Aligned_cols=127 Identities=13% Similarity=0.068 Sum_probs=113.0
Q ss_pred CCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCCC
Q psy2417 255 PTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSGD 334 (391)
Q Consensus 255 ~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~~ 334 (391)
.+++|||+|||||||.||||++||+++++++......++ ++++|++++++|++|++|+...+.+++.|+++++.+..
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~---~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~ 112 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALS---LGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT 112 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTT---CCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhC---CCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc
Confidence 478999999999999999999999999999999988888 99999999999999999999889999999999997652
Q ss_pred HHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Q psy2417 335 IKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMGSK 385 (391)
Q Consensus 335 ~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~~k 385 (391)
..+++.++++++|++.++|+++..+++......++++||.+++||+...+
T Consensus 113 -~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~gG~~l~~ 162 (358)
T 4gs5_A 113 -ANPLAGLDHADFDFVAMVPMQLQSILENSATSGQVDRLGKVLLGGAPVNH 162 (358)
T ss_dssp -SCTTTTCSSCCCSEEEECHHHHHHHHHCTTTGGGGGGGCSEEECSSCCCH
T ss_pred -ccHHHHHHHhCCeEEEcChHHHHHhhccccccccCCcceEEEEcccCCCc
Confidence 23467789999999999999999998876566678899999999986543
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.73 E-value=1.4e-18 Score=168.14 Aligned_cols=129 Identities=16% Similarity=0.122 Sum_probs=107.7
Q ss_pred CCC-CCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHh---hcCCCCCCCCEEEEcCChHHHHHHHH-HHHHHHhCcE
Q psy2417 253 PKP-TDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQ---LSDHRPKYSDVLISFLPLAHMLERTC-ESAMFLVGGS 327 (391)
Q Consensus 253 ~~~-~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~L~~G~~ 327 (391)
..+ +++++|+|||||||.||||+++|+++.+........ ++ +.++|++++.+|++|..+... .+.++..|++
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~ 158 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVG---IRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL 158 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTT---CCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcC---CCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence 345 889999999999999999999999998876665433 35 889999999999976555554 4889999999
Q ss_pred EEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH-HhcC--chhHHHHHHHHHHHH
Q psy2417 328 IGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM-AQIR--PSFIKRLMFNMAMGS 384 (391)
Q Consensus 328 vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~-~~~~--~~slr~~~~gga~~~ 384 (391)
+++.+. ++..+++.|++++||+++++|+++..|++... ...+ +++||.+++||+...
T Consensus 159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~ 219 (436)
T 3qov_A 159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHT 219 (436)
T ss_dssp EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCC
T ss_pred EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCC
Confidence 998765 89999999999999999999999999998744 3333 678999999887653
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.73 E-value=3.8e-18 Score=165.16 Aligned_cols=130 Identities=14% Similarity=0.136 Sum_probs=109.3
Q ss_pred CCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHH---hhcCCCCCCCCEEEEcCCh-HHHHHHHHHHHHHHhCcE
Q psy2417 252 PPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALL---QLSDHRPKYSDVLISFLPL-AHMLERTCESAMFLVGGS 327 (391)
Q Consensus 252 ~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~~~~d~~l~~~pl-~h~~g~~~~~~~L~~G~~ 327 (391)
...++++++|+|||||||.||||+++|+++......... .++ +.++|++++.+|+ .|..++...+.++..|++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~ 162 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAG---ARRGDKVHVSYGYGLFTGGLGAHYGAERAGLT 162 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTT---CCTTCEEEECSCCSSSHHHHHHHHHHHHTTCE
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcC---CCCCCEEEEcccccccccchHHHHHHHHcCCE
Confidence 346789999999999999999999999999877654433 455 8899999999999 688888777899999999
Q ss_pred EEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH-HhcC--chhHHHHHHHHHHHH
Q psy2417 328 IGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM-AQIR--PSFIKRLMFNMAMGS 384 (391)
Q Consensus 328 vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~-~~~~--~~slr~~~~gga~~~ 384 (391)
+++.+. ++..+++.|++++||+++++|+++..|++... ...+ ++++|.+++||+...
T Consensus 163 ~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~ 223 (437)
T 2y27_A 163 VIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWT 223 (437)
T ss_dssp EECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCC
T ss_pred EEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCC
Confidence 998765 99999999999999999999999999988744 3333 368888888887653
No 35
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.73 E-value=1.1e-18 Score=165.17 Aligned_cols=132 Identities=14% Similarity=0.150 Sum_probs=104.1
Q ss_pred CCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCCh-HHHHHHHHHHHHHHhCcEEEEe
Q psy2417 253 PKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPL-AHMLERTCESAMFLVGGSIGYY 331 (391)
Q Consensus 253 ~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl-~h~~g~~~~~~~L~~G~~vv~~ 331 (391)
..++++++|+|||||||.||||+++|+++.+........+....+.++|++++.+|+ +|++|+...+.++..|+.++..
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~ 167 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI 167 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc
Confidence 367889999999999999999999999999988755433322227889999999999 9999999888889999944433
Q ss_pred CCCHH-----------------------hHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHHHHHHHHH
Q psy2417 332 SGDIK-----------------------NLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 332 ~~~~~-----------------------~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~~gga~~~ 384 (391)
+.+|. .+++.|+++++|++.++|+++..|++.. ....++++||.+++||+...
T Consensus 168 ~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~ 244 (369)
T 3hgu_A 168 DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELN 244 (369)
T ss_dssp CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCC
T ss_pred cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCC
Confidence 33676 7888999999999999999999998763 23355678888888886543
No 36
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.72 E-value=4.8e-18 Score=164.79 Aligned_cols=129 Identities=16% Similarity=0.150 Sum_probs=108.6
Q ss_pred CCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHH---hhcCCCCCCCCEEEEcCCh-HHHHHHHHHHHHHHhCcEE
Q psy2417 253 PKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALL---QLSDHRPKYSDVLISFLPL-AHMLERTCESAMFLVGGSI 328 (391)
Q Consensus 253 ~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~~~~d~~l~~~pl-~h~~g~~~~~~~L~~G~~v 328 (391)
..++++++|+|||||||.||||+++|+++......... .++ +.++|++++.+|+ .|..++...+.++..|+++
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~---~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~ 165 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAG---GRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMV 165 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTT---CCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEE
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcC---CCCCCEEEEeccCcccccHHHHHHHHHHcCCEE
Confidence 46789999999999999999999999999876654443 455 8899999999999 5777777778999999999
Q ss_pred EEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH-HhcC--chhHHHHHHHHHHHH
Q psy2417 329 GYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM-AQIR--PSFIKRLMFNMAMGS 384 (391)
Q Consensus 329 v~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~-~~~~--~~slr~~~~gga~~~ 384 (391)
++.+. ++..+++.|++++||+++++|+++..|++... ...+ +++||.+++||+...
T Consensus 166 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~ 225 (443)
T 2y4o_A 166 VPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWT 225 (443)
T ss_dssp ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCC
T ss_pred EECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCC
Confidence 98765 99999999999999999999999999988743 3333 368888888887653
No 37
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=91.40 E-value=2 Score=40.31 Aligned_cols=121 Identities=12% Similarity=0.011 Sum_probs=85.6
Q ss_pred cCCCceEEEeec--CCCC-ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCC--HHHHHHHHHHHhcCCeEEEcc
Q psy2417 96 SNNGRCLGWRQN--ISRP-YQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNC--PEWIITEQGAYCYSMIIVALY 170 (391)
Q Consensus 96 ~pd~~al~~~~~--~~~~-~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s--~e~i~~~lA~~~~G~~~vpl~ 170 (391)
.++.++.+.... .+.+ ...+|.+.+...+..++..+...|+.+++++..+.+-+ ...+...++.+..|+..+++.
T Consensus 88 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 167 (437)
T 2y27_A 88 PQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFG 167 (437)
T ss_dssp CGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCC
T ss_pred ChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCC
Confidence 445666554332 2333 46689999998888888888889999999999888853 344456788889999988766
Q ss_pred CCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhc--------ccCccEEEEecCc
Q psy2417 171 DTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRA--------PRCLKKIISIREV 218 (391)
Q Consensus 171 ~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~--------~~~l~~ii~~~~~ 218 (391)
. ..++.+...+++.++.++++.... +..+.+.. ..+++.+++-+..
T Consensus 168 ~-~~~~~~~~~i~~~~~t~l~~~Ps~-~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 221 (437)
T 2y27_A 168 G-GQTEKQVQLIQDFRPDIIMVTPSY-MLSIADEIERQGLDPVQSSLRIGIFGAEP 221 (437)
T ss_dssp S-CCHHHHHHHHHHHCCSEEEECHHH-HHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred C-CCHHHHHHHHHHhCCCEEEECHHH-HHHHHHHHHHcCCCcccCCeeEEEEcCcc
Confidence 5 478999999999999999887642 33333321 1267777776544
No 38
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=90.88 E-value=2.3 Score=40.03 Aligned_cols=121 Identities=14% Similarity=0.038 Sum_probs=85.3
Q ss_pred cCCCceEEEee--cCCCC-ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCC--HHHHHHHHHHHhcCCeEEEcc
Q psy2417 96 SNNGRCLGWRQ--NISRP-YQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNC--PEWIITEQGAYCYSMIIVALY 170 (391)
Q Consensus 96 ~pd~~al~~~~--~~~~~-~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s--~e~i~~~lA~~~~G~~~vpl~ 170 (391)
.++.++.+... ..+.+ ...+|.+.+...+..++..+...|+.+++++..+.+-+ ...+...++.+..|+..+++.
T Consensus 90 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 169 (443)
T 2y4o_A 90 PREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMS 169 (443)
T ss_dssp CGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCC
T ss_pred ChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECC
Confidence 34566644433 22333 45689999998888888888889999999999888853 344556788888999988776
Q ss_pred CCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhc--------ccCccEEEEecCc
Q psy2417 171 DTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRA--------PRCLKKIISIREV 218 (391)
Q Consensus 171 ~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~--------~~~l~~ii~~~~~ 218 (391)
.. ..+++...+++.++.++++.... +..+.+.. ..+++.+++-+..
T Consensus 170 ~~-~~~~~~~~i~~~~~t~l~~~Ps~-~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 223 (443)
T 2y4o_A 170 GG-QTEKQVQLIRDFEPKIILVTPSY-MLNLIDEMVRQGMDPAESSLKIGIFGAEP 223 (443)
T ss_dssp SC-CHHHHHHHHHHHCCSEEEECHHH-HHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred CC-CHHHHHHHHHHhCCcEEEECHHH-HHHHHHHHHHcCCCcccCCceEEEECCCc
Confidence 54 78899999999999999887652 33333221 1267777776554
No 39
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=88.08 E-value=2.7 Score=39.43 Aligned_cols=119 Identities=11% Similarity=-0.049 Sum_probs=85.2
Q ss_pred CCceEEEeec--CCCC-ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCC--HHHHHHHHHHHhcCCeEEEccCC
Q psy2417 98 NGRCLGWRQN--ISRP-YQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNC--PEWIITEQGAYCYSMIIVALYDT 172 (391)
Q Consensus 98 d~~al~~~~~--~~~~-~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s--~e~i~~~lA~~~~G~~~vpl~~~ 172 (391)
+.++.+.... .+.+ ...+|.+.+...+..++..+...|+.+++++..+.+-+ ...+..+++.+..|+..++.++
T Consensus 86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~- 164 (436)
T 3qov_A 86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA- 164 (436)
T ss_dssp HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-
T ss_pred CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-
Confidence 5556554432 2333 46789999999999999989889999999999988743 4445567888999998887765
Q ss_pred CCHHHHHHHHHhcCccEEEEcCCcchhHHHhhc--------ccCccEEEEecCc
Q psy2417 173 LGPDACAFIINQAEISVLIVDDDSKCNQIIDRA--------PRCLKKIISIREV 218 (391)
Q Consensus 173 ~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~--------~~~l~~ii~~~~~ 218 (391)
..++.+...+++.++.+++..... +..+.+.. ..+++.+++-+..
T Consensus 165 ~~~~~~~~~i~~~~~t~~~~~P~~-~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 217 (436)
T 3qov_A 165 GNSKRQIKFISDFKTTALHAIPSY-AIRLAEVFQEEGIDPRETTLKTLVIGAEP 217 (436)
T ss_dssp CCHHHHHHHHHHHTCCEEECCHHH-HHHHHHHHHHTTCCTTSSSCCEEEEESSC
T ss_pred CCHHHHHHHHHHHCCCEEEECHHH-HHHHHHHHHHcCCCcccCCccEEEEeCCc
Confidence 467889999999999998887652 33333321 1157777776554
No 40
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=83.99 E-value=18 Score=34.30 Aligned_cols=118 Identities=8% Similarity=-0.031 Sum_probs=81.5
Q ss_pred cCCCceEEEeec--CCCC-ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCH-HHHHHHHHHHhcCCeEEEccC
Q psy2417 96 SNNGRCLGWRQN--ISRP-YQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCP-EWIITEQGAYCYSMIIVALYD 171 (391)
Q Consensus 96 ~pd~~al~~~~~--~~~~-~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~-e~i~~~lA~~~~G~~~vpl~~ 171 (391)
.++.+|++.... .+.+ ...+|.+.+...+..+... .++.+++++..++|-.. -.+..+++.+..|+..+..+
T Consensus 161 ~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~- 236 (501)
T 3ipl_A 161 NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKES---LGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD- 236 (501)
T ss_dssp CTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHH---TCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred CCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHh---hCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-
Confidence 467777666543 2233 4678999888776665544 57889999998888543 33344677888898887765
Q ss_pred CCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc---CccEEEEecCc
Q psy2417 172 TLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR---CLKKIISIREV 218 (391)
Q Consensus 172 ~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~---~l~~ii~~~~~ 218 (391)
.+.++.+...+++.++..+.+.... +..+.+.... +++.+++-+..
T Consensus 237 ~~~~~~~~~~i~~~~~t~~~~~P~~-~~~l~~~~~~~~~~lr~i~~gG~~ 285 (501)
T 3ipl_A 237 KFNAEQILTMIKNERITHISLVPQT-LNWLMQQGLHEPYNLQKILLGGAK 285 (501)
T ss_dssp SCCHHHHHHHHHHSCCCEEEECHHH-HHHHHHHTCCSCTTCCEEEECSSC
T ss_pred CCCHHHHHHHHHHcCCcEEEchHHH-HHHHHhcCCCCcCcccEEEEeCCC
Confidence 4789999999999999999887652 4444443322 57777765543
No 41
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=79.89 E-value=19 Score=34.67 Aligned_cols=102 Identities=11% Similarity=-0.061 Sum_probs=73.1
Q ss_pred CCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCC
Q psy2417 254 KPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG 333 (391)
Q Consensus 254 ~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~ 333 (391)
.++.+|++....+ .+..+|++.+...+..+...+....+.++|++...++-+..+ +...++++..|+..+..+.
T Consensus 31 ~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~ 104 (541)
T 1v25_A 31 FGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRH-LEAYFAVPGMGAVLHTANP 104 (541)
T ss_dssp STTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHhcCcEEEecCc
Confidence 3566776643211 356799999987776665544222278999999998866432 2233788999999988765
Q ss_pred --CHHhHHHHHHhcCCcEEecChHHHHHHH
Q psy2417 334 --DIKNLTEDMKTLKPTIMPAVPRLLNRMY 361 (391)
Q Consensus 334 --~~~~l~~~i~~~~~t~~~~~P~~l~~l~ 361 (391)
..+.+...++..++..++..+.....+.
T Consensus 105 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 134 (541)
T 1v25_A 105 RLSPKEIAYILNHAEDKVLLFDPNLLPLVE 134 (541)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHHH
T ss_pred ccCHHHHHHHHHhCCCcEEEEChhHHHHHH
Confidence 7789999999999999999887765543
No 42
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=79.62 E-value=5.3 Score=38.79 Aligned_cols=104 Identities=11% Similarity=0.082 Sum_probs=74.4
Q ss_pred CCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCC-
Q psy2417 255 PTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG- 333 (391)
Q Consensus 255 ~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~- 333 (391)
++.++.+.+..+.++ ..+|++.+...+..+...+....+.++|++...++-+..+ +...++++..|+..+..+.
T Consensus 34 p~~~a~~a~~~~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~~ 108 (550)
T 3rix_A 34 ALVPGTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF-FMPVLGALFIGVAVAPANDI 108 (550)
T ss_dssp HTSTTCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT-HHHHHHHHHHTCEEEECCTT
T ss_pred CCCceEEEeeecCCC----cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccH-HHHHHHHHHcCCEEeecCCc
Confidence 455565544444333 4789999987776655544211288999999998865432 2233789999999988765
Q ss_pred -CHHhHHHHHHhcCCcEEecChHHHHHHHHH
Q psy2417 334 -DIKNLTEDMKTLKPTIMPAVPRLLNRMYDK 363 (391)
Q Consensus 334 -~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~ 363 (391)
....+...++..++.+++..+..+..+.+.
T Consensus 109 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 139 (550)
T 3rix_A 109 YNERELLNSMNISQPTVVFVSKKGLQKILNV 139 (550)
T ss_dssp CCHHHHHHHHHHHCCSEEEECGGGHHHHHHH
T ss_pred CCHHHHHHHHHhcCCeEEEEcHHHHHHHHHH
Confidence 778999999999999999988877766543
No 43
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=79.14 E-value=14 Score=33.52 Aligned_cols=120 Identities=11% Similarity=0.027 Sum_probs=77.1
Q ss_pred cCCCceEEEeec--CCCC-ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCC--HHHHHHHHHHHhcCCeEEEcc
Q psy2417 96 SNNGRCLGWRQN--ISRP-YQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNC--PEWIITEQGAYCYSMIIVALY 170 (391)
Q Consensus 96 ~pd~~al~~~~~--~~~~-~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s--~e~i~~~lA~~~~G~~~vpl~ 170 (391)
.++.++.+.... .+.+ ...+|.+.+...+..++..+...|+.+++++..+++-+ .--....++++..|+.+++.
T Consensus 89 ~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~- 167 (369)
T 3hgu_A 89 PADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI- 167 (369)
T ss_dssp CTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC-
T ss_pred CccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc-
Confidence 456656554432 2333 45689999988888777778888999999999988862 23334445558889855543
Q ss_pred CCCCHH-----------------------HHHHHHHhcCccEEEEcCCcchhHHHhhc------ccCccEEEEecCc
Q psy2417 171 DTLGPD-----------------------ACAFIINQAEISVLIVDDDSKCNQIIDRA------PRCLKKIISIREV 218 (391)
Q Consensus 171 ~~~~~~-----------------------~l~~il~~~~~~~vi~~~~~~~~~~~~~~------~~~l~~ii~~~~~ 218 (391)
.+.++ ++...+++.++.++++.... +..+++.. ..+++.+++-+..
T Consensus 168 -~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~-~~~l~~~~~~~~~~~~~lr~i~~gGe~ 242 (369)
T 3hgu_A 168 -DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPV-LRELLKRPEVVLQMKQSLAQITLGGTE 242 (369)
T ss_dssp -CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHH-HHHHTTCHHHHHHHHHHCSEEEEESSC
T ss_pred -cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHH-HHHHHhhhhhhccccCCeeEEEECCcc
Confidence 34444 66779999999999887642 33333221 1157777776543
No 44
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=78.22 E-value=15 Score=35.14 Aligned_cols=99 Identities=14% Similarity=0.083 Sum_probs=74.0
Q ss_pred CCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCC
Q psy2417 254 KPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG 333 (391)
Q Consensus 254 ~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~ 333 (391)
.|+.+|++. .+..+|++.+...+..+...+....+.++|++...++-+..+ +...++++..|+..+..+.
T Consensus 19 ~pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~Ga~~vpl~~ 88 (509)
T 3ivr_A 19 FPDRTAFMV---------DGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEM-IELIGAVALIGAILLPVNY 88 (509)
T ss_dssp STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHHhCCEEEecCC
Confidence 467788764 135799999988877666655322288999999999876432 2334788999999998765
Q ss_pred --CHHhHHHHHHhcCCcEEecChHHHHHHHH
Q psy2417 334 --DIKNLTEDMKTLKPTIMPAVPRLLNRMYD 362 (391)
Q Consensus 334 --~~~~l~~~i~~~~~t~~~~~P~~l~~l~~ 362 (391)
..+.+...++..++..++..+.....+.+
T Consensus 89 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 119 (509)
T 3ivr_A 89 RLNADEIAFVLGDGAPSVVVAGTDYRDIVAG 119 (509)
T ss_dssp TSCHHHHHHHHHHHCEEEEEECSTTHHHHHH
T ss_pred CCCHHHHHHHHHhcCceEEEECcchhhhHHh
Confidence 77889999999999999998877665443
No 45
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=78.12 E-value=22 Score=34.25 Aligned_cols=107 Identities=7% Similarity=-0.052 Sum_probs=75.8
Q ss_pred CCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCC
Q psy2417 254 KPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG 333 (391)
Q Consensus 254 ~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~ 333 (391)
.++.+|++....+..+. ..-.+|++.+...+..+...+....+.++|++...++-+..+ +...++++..|+..+..+.
T Consensus 32 ~p~~~A~~~~~~~~~~~-~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~ 109 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPSE-FPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDY-VMTIYALWRVAATPVPINP 109 (549)
T ss_dssp HTTSEEEEEESSCCCCS-SCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEeCCCccccc-ccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHHHHhCCEEEccCC
Confidence 36778877653221111 125689999988776665554322288999999999876533 2334789999999988765
Q ss_pred --CHHhHHHHHHhcCCcEEecChHHHHHHHH
Q psy2417 334 --DIKNLTEDMKTLKPTIMPAVPRLLNRMYD 362 (391)
Q Consensus 334 --~~~~l~~~i~~~~~t~~~~~P~~l~~l~~ 362 (391)
....+...++..++..++..+.....+..
T Consensus 110 ~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~ 140 (549)
T 3g7s_A 110 MYKSFELEHILNDSEATTLVVHSMLYENFKP 140 (549)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEEGGGHHHHHH
T ss_pred CCCHHHHHHHHHhcCCCEEEEChHHHHHHHH
Confidence 77899999999999999998877766544
No 46
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=76.22 E-value=1.9 Score=42.39 Aligned_cols=54 Identities=13% Similarity=0.162 Sum_probs=36.8
Q ss_pred ceEEeHHHHHHhhhcc-CCCC-CCCCCCCceEEEecCCCC-CCCcEEEeehhHHHHH
Q psy2417 231 IEIIRFDEIERVGAQK-MFEE-VPPKPTDLCTICYTSGTT-GNPKGVMLTHGNVIAA 284 (391)
Q Consensus 231 ~~~~~~~~l~~~~~~~-~~~~-~~~~~~~~a~i~~TSGST-G~PKgV~~th~~l~~~ 284 (391)
+.+.+++++...-... .... .-..++.+.++.-||||| |+||-+.+|...+-..
T Consensus 72 VPv~~Yedl~p~ieRi~~Ge~~~il~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~~ 128 (609)
T 4b2g_A 72 IPVIKYEDLQPEIQRIANGDRSAILSAHPISEFLTSSGTSAGERKLMPTIQEELDRR 128 (609)
T ss_dssp SCCBCHHHHHHHHHHHHTTCCSSSSCSSCCCEEEEEEEEETTEEEEEEECTTHHHHH
T ss_pred CCCccHHHHHHHHHHHhcCCCCCccCCCCCCeEEeCCCCCCCCceeeecCHHHHHHH
Confidence 4566777765432111 1111 224677788999999999 7899999999987653
No 47
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=75.86 E-value=25 Score=33.40 Aligned_cols=99 Identities=15% Similarity=0.130 Sum_probs=69.6
Q ss_pred CCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCC
Q psy2417 254 KPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG 333 (391)
Q Consensus 254 ~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~ 333 (391)
.|+.+|++... .+..+|++.+...+..+...+....+.++|++...++-+..+ +...++++..|+..+..+.
T Consensus 15 ~p~~~a~~~~~-------~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~ 86 (504)
T 1t5h_X 15 APDHCALAVPA-------RGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADV-VIAILALHRLGAVPALLNP 86 (504)
T ss_dssp CTTSEEEEETT-------TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHHTCEEEEECT
T ss_pred CCCceEEEEcC-------CCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHHhCcEEEecCC
Confidence 45667776421 135799999988776665544222278999999999876543 3334789999999998765
Q ss_pred --CHHhHHHHHHhcCCcEEec--ChHHHHHH
Q psy2417 334 --DIKNLTEDMKTLKPTIMPA--VPRLLNRM 360 (391)
Q Consensus 334 --~~~~l~~~i~~~~~t~~~~--~P~~l~~l 360 (391)
.++.+...+++.++..++. .+.....+
T Consensus 87 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 87 RLKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp TSCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred ccChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 6788999999999999887 55554443
No 48
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=75.38 E-value=17 Score=34.89 Aligned_cols=101 Identities=16% Similarity=0.147 Sum_probs=73.8
Q ss_pred CCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCC
Q psy2417 254 KPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG 333 (391)
Q Consensus 254 ~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~ 333 (391)
.++.+|++.. .+| -.+|++.+...+..+...+....+.++|++...++-+..+ +...++++..|+..+..+.
T Consensus 35 ~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~la~~~~Gav~vpl~~ 106 (536)
T 3ni2_A 35 HSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEF-VLAFLGASHRGAIITAANP 106 (536)
T ss_dssp STTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHhCCEEeccCC
Confidence 4677877642 222 4689999988776665554322288999999999876432 2334789999999888765
Q ss_pred --CHHhHHHHHHhcCCcEEecChHHHHHHHH
Q psy2417 334 --DIKNLTEDMKTLKPTIMPAVPRLLNRMYD 362 (391)
Q Consensus 334 --~~~~l~~~i~~~~~t~~~~~P~~l~~l~~ 362 (391)
.++.+...++..++.+++..+.....+.+
T Consensus 107 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 137 (536)
T 3ni2_A 107 FSTPAELAKHAKASRAKLLITQACYYEKVKD 137 (536)
T ss_dssp TCCHHHHHHHHHHHTEEEEEECGGGTHHHHH
T ss_pred CCCHHHHHHHHHhcCCEEEEEChHHHHHHHH
Confidence 78899999999999999988877666544
No 49
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=74.78 E-value=1.5 Score=42.95 Aligned_cols=54 Identities=19% Similarity=0.122 Sum_probs=37.4
Q ss_pred CceEEeHHHHHHhhhcc-CCC-CCCCCCCCceEEEecCCCC-CCCcEEEeehhHHHH
Q psy2417 230 AIEIIRFDEIERVGAQK-MFE-EVPPKPTDLCTICYTSGTT-GNPKGVMLTHGNVIA 283 (391)
Q Consensus 230 ~~~~~~~~~l~~~~~~~-~~~-~~~~~~~~~a~i~~TSGST-G~PKgV~~th~~l~~ 283 (391)
.+.+.+|+++...-... ... ..-..++.+.+..-||||| |++|-+.+|...+-.
T Consensus 70 ~VPi~~Yedl~pyIeRi~~Ge~~~iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~ 126 (581)
T 4epl_A 70 MVPLVTDVELEPYIKRMVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126 (581)
T ss_dssp HSCCBCHHHHHHHHHHHHTTCCSSSSSSSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred hCCCccHHHHHHHHHHHHCCCCCCccCCCCcceEEecCCCCCCCccccccCHHHHHH
Confidence 34567888875432211 111 2234677788999999999 789999999998765
No 50
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=74.56 E-value=38 Score=32.82 Aligned_cols=103 Identities=13% Similarity=0.031 Sum_probs=75.0
Q ss_pred CCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCC-CCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeC
Q psy2417 254 KPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDH-RPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYS 332 (391)
Q Consensus 254 ~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~ 332 (391)
.++.+|++.... .| .+..+|.+.+...+..+...+... .+.++|++...++-+..+- ...++++..|+..+..+
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~-~~~lA~~~~Ga~~vpl~ 130 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWW-LVILGCIRAGLIFMPGT 130 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHH-HHHHHHHHHTCEEEECC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHH-HHHHHHHHcCeEEEecC
Confidence 467778765431 12 246799999988877666655322 2789999999988665332 23378999999988876
Q ss_pred C--CHHhHHHHHHhcCCcEEecChHHHHHHH
Q psy2417 333 G--DIKNLTEDMKTLKPTIMPAVPRLLNRMY 361 (391)
Q Consensus 333 ~--~~~~l~~~i~~~~~t~~~~~P~~l~~l~ 361 (391)
. .+..+...++..++..++..+.....+.
T Consensus 131 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 161 (570)
T 3c5e_A 131 IQMKSTDILYRLQMSKAKAIVAGDEVIQEVD 161 (570)
T ss_dssp TTCCHHHHHHHHHHHTCSEEEEETTTHHHHH
T ss_pred CCCCHHHHHHHHHhcCCeEEEechHHHHHHH
Confidence 5 6788999999999999998887666553
No 51
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=73.64 E-value=20 Score=34.56 Aligned_cols=118 Identities=13% Similarity=0.033 Sum_probs=78.8
Q ss_pred CCceEEEeec--CCCC-ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHH--HHHHHHHHhcCCeEEEccCC
Q psy2417 98 NGRCLGWRQN--ISRP-YQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEW--IITEQGAYCYSMIIVALYDT 172 (391)
Q Consensus 98 d~~al~~~~~--~~~~-~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~--i~~~lA~~~~G~~~vpl~~~ 172 (391)
+.+|++.... .+.+ ...+|.+.+...+......+...++.+++++..+++-...+ ...+++.+ .|+..+..+ .
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~ 269 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-K 269 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-C
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-C
Confidence 6677665542 2222 57799998877766655444346888999998888865433 23356777 998888775 5
Q ss_pred CCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcc------cCccEEEEecCc
Q psy2417 173 LGPDACAFIINQAEISVLIVDDDSKCNQIIDRAP------RCLKKIISIREV 218 (391)
Q Consensus 173 ~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~------~~l~~ii~~~~~ 218 (391)
+.++.+...+++.++.+++..... +..+.+... .+++.+++-+..
T Consensus 270 ~~~~~~~~~i~~~~~t~~~~~P~~-~~~l~~~~~~~~~~l~~lr~i~~gG~~ 320 (548)
T 2d1s_A 270 FDEETFLKTLQDYKCTSVILVPTL-FAILNKSELLNKYDLSNLVEIASGGAP 320 (548)
T ss_dssp CCHHHHHHHHHHTTEEEEEECHHH-HHHHHHCSCGGGSCCTTCCEEEECSSC
T ss_pred CCHHHHHHHHHHcCCcEEEecHHH-HHHHHhCcccccccccceeEEEEcCcc
Confidence 789999999999999999887642 333333211 156777665543
No 52
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=73.47 E-value=43 Score=31.28 Aligned_cols=107 Identities=10% Similarity=0.023 Sum_probs=76.8
Q ss_pred CCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCC
Q psy2417 254 KPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG 333 (391)
Q Consensus 254 ~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~ 333 (391)
.|+.+|++.........-....+|.+.+...+..+...+...-. ++|++...++-+..+ +...++++..|+..+..+.
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl~~ 114 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEY-VVAFLGALQAGRIAVPLSV 114 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEECS
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHH-HHHHHHHHHhCcEEEeeCC
Confidence 46778877654321111234789999999988888777653323 789999888866533 2333789999999887743
Q ss_pred -----CHHhHHHHHHhcCCcEEecChHHHHHHHH
Q psy2417 334 -----DIKNLTEDMKTLKPTIMPAVPRLLNRMYD 362 (391)
Q Consensus 334 -----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~ 362 (391)
..+.+...++..++..++..+.....+.+
T Consensus 115 ~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 115 PQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp CCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred CCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 45788899999999999998877766544
No 53
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=72.95 E-value=45 Score=31.98 Aligned_cols=118 Identities=7% Similarity=-0.059 Sum_probs=80.1
Q ss_pred cCCCceEEEeec--CCCC-ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHH---HHHHHHhcCCeEEEc
Q psy2417 96 SNNGRCLGWRQN--ISRP-YQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWII---TEQGAYCYSMIIVAL 169 (391)
Q Consensus 96 ~pd~~al~~~~~--~~~~-~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~---~~lA~~~~G~~~vpl 169 (391)
.|+.+|++.... .+.+ ...+|.+.+...+...... .++.+++++..++|-+..+-. .+++.+..|+..+..
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 256 (539)
T 1mdb_A 180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS 256 (539)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence 466777665542 2233 4679999887776665544 367889999888886644332 478889999988876
Q ss_pred cCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhc---c---cCccEEEEecCc
Q psy2417 170 YDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRA---P---RCLKKIISIREV 218 (391)
Q Consensus 170 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~---~---~~l~~ii~~~~~ 218 (391)
+ ...++.+...+++.++.++...... +..+++.. . .+++.+++-+..
T Consensus 257 ~-~~~~~~~~~~i~~~~~t~~~~~P~~-~~~l~~~~~~~~~~l~~lr~~~~gG~~ 309 (539)
T 1mdb_A 257 P-SPSPDDAFPLIEREKVTITALVPPL-AMVWMDAASSRRDDLSSLQVLQVGGAK 309 (539)
T ss_dssp S-SSSHHHHHHHHHHHTCSEEEECHHH-HHHHHHHHHHCCCCCTTCCEEEEESSC
T ss_pred C-CCCHHHHHHHHHHcCCeEEEccHHH-HHHHHhCccccCCCccceeEEEEcCCC
Confidence 4 4788999999999999998887642 33333221 1 167777766553
No 54
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=72.94 E-value=39 Score=32.48 Aligned_cols=118 Identities=12% Similarity=0.044 Sum_probs=80.3
Q ss_pred cCCCceEEEeec--CCCC-ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHH---HHHHHHhcCCeEEEc
Q psy2417 96 SNNGRCLGWRQN--ISRP-YQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWII---TEQGAYCYSMIIVAL 169 (391)
Q Consensus 96 ~pd~~al~~~~~--~~~~-~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~---~~lA~~~~G~~~vpl 169 (391)
.++.+|++.... .+.+ ...+|.+.+...+...... .++.+++++..++|-+..+-. .+++.+..|+..+..
T Consensus 189 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 265 (544)
T 3o83_A 189 PADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA 265 (544)
T ss_dssp CTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CccceEEEEECCCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEEC
Confidence 356677665442 2233 4678999988777666554 478999999998886654433 478888899888776
Q ss_pred cCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcc------cCccEEEEecCc
Q psy2417 170 YDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAP------RCLKKIISIREV 218 (391)
Q Consensus 170 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~------~~l~~ii~~~~~ 218 (391)
+ ...++.+...+++.++..+...... +..+++... .+++.+++-+..
T Consensus 266 ~-~~~~~~~~~~i~~~~~t~~~~~P~~-~~~l~~~~~~~~~~~~~lr~i~~gG~~ 318 (544)
T 3o83_A 266 P-NPEPLNCFSIIQRHQVNMASLVPSA-VIMWLEKAAQYKDQIQSLKLLQVGGAS 318 (544)
T ss_dssp S-SCCHHHHHHHHHHHTCCEEEECHHH-HHHHHHHHTTTHHHHTTCCEEEEESSC
T ss_pred C-CCCHHHHHHHHHHHCCCEEEechHH-HHHHHhchhhccccCCcceEEEEcCCC
Confidence 5 4678888899999999998887642 333332211 167777766543
No 55
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=71.09 E-value=29 Score=32.97 Aligned_cols=99 Identities=12% Similarity=0.028 Sum_probs=70.5
Q ss_pred CCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCC-
Q psy2417 255 PTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG- 333 (391)
Q Consensus 255 ~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~- 333 (391)
++..+.++...+ |-.+|++.+...+..+...+....+.++|++...++-+..+ +...++++..|+..+..+.
T Consensus 14 p~~~a~~~~~~~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~Ga~~vpl~~~ 86 (503)
T 4fuq_A 14 DDPHKLAIETAA------GDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEA-LVLYLATVRAGGVYLPLNTA 86 (503)
T ss_dssp SCTTSEEEEETT------CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHTTCEEEECCTT
T ss_pred CCCceEEEecCC------CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHHHHcCcEEEecCCC
Confidence 455555554332 24689999988776665554322288999999999876433 2334789999999888765
Q ss_pred -CHHhHHHHHHhcCCcEEecChHHHHHH
Q psy2417 334 -DIKNLTEDMKTLKPTIMPAVPRLLNRM 360 (391)
Q Consensus 334 -~~~~l~~~i~~~~~t~~~~~P~~l~~l 360 (391)
..+.+...++..++.+++..+.....+
T Consensus 87 ~~~~~l~~il~~~~~~~vi~~~~~~~~~ 114 (503)
T 4fuq_A 87 YTLHELDYFITDAEPKIVVCDPSKRDGI 114 (503)
T ss_dssp CCHHHHHHHHHHHCCSEEEECGGGTTTT
T ss_pred CCHHHHHHHHHhcCCcEEEECchhhHHH
Confidence 778899999999999999887654433
No 56
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=71.02 E-value=21 Score=34.26 Aligned_cols=98 Identities=8% Similarity=-0.077 Sum_probs=71.6
Q ss_pred CCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCC
Q psy2417 254 KPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG 333 (391)
Q Consensus 254 ~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~ 333 (391)
.++.+|++.. +..+|++.+...+..+...+....+.++|++...++-+..+- ...++++..|+..+..+.
T Consensus 36 ~p~~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~-~~~lA~~~~G~~~vpl~~ 105 (529)
T 2v7b_A 36 RAGKTAYIDD---------TGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALP-VAFLGALYAGVVPVVANT 105 (529)
T ss_dssp GTTSEEEECS---------SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHH-HHHHHHHHHTCEEEECCT
T ss_pred cCCceEEEeC---------CCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH-HHHHHHHHcCceEEecCc
Confidence 4566776532 246899999887766655443222789999999988765432 234789999999888765
Q ss_pred --CHHhHHHHHHhcCCcEEecChHHHHHHH
Q psy2417 334 --DIKNLTEDMKTLKPTIMPAVPRLLNRMY 361 (391)
Q Consensus 334 --~~~~l~~~i~~~~~t~~~~~P~~l~~l~ 361 (391)
.+..+...+++.++..++..+.....+.
T Consensus 106 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 135 (529)
T 2v7b_A 106 LLTPADYVYMLTHSHARAVIASGALVQNVT 135 (529)
T ss_dssp TCCHHHHHHHHHHHTCSEEEEEGGGHHHHH
T ss_pred ccCHHHHHHHHhccCCeEEEechhhhhHHH
Confidence 7889999999999999998887665543
No 57
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=70.87 E-value=44 Score=33.13 Aligned_cols=98 Identities=11% Similarity=0.167 Sum_probs=71.5
Q ss_pred CCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhc-CCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeC
Q psy2417 254 KPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLS-DHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYS 332 (391)
Q Consensus 254 ~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~-~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~ 332 (391)
.++.+|++... ..+| .+..+|.+.+...+..+...+. ...+.++|++..++|.+-.+- ...++++..|+..+.+.
T Consensus 95 ~pd~~Al~~~~-~~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v-~a~lA~~~~Gav~vpl~ 170 (663)
T 1ry2_A 95 TPNKKAIIFEG-DEPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAI-ITLLAISRIGAIHSVVF 170 (663)
T ss_dssp CTTSEEEEEEC-SSTT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHH-HHHHHHHHTTCEEEECC
T ss_pred CCCceEEEEEc-CCCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHH-HHHHHHHHcCCEEEeeC
Confidence 46778877543 2222 2457999999887776665543 222889999999999775432 23378999999988776
Q ss_pred C--CHHhHHHHHHhcCCcEEecChH
Q psy2417 333 G--DIKNLTEDMKTLKPTIMPAVPR 355 (391)
Q Consensus 333 ~--~~~~l~~~i~~~~~t~~~~~P~ 355 (391)
. .+..+...+++.++.+++....
T Consensus 171 ~~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 171 AGFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEEESB
T ss_pred CCCCHHHHHHHHHhcCCeEEEEccc
Confidence 5 7889999999999999987654
No 58
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=70.76 E-value=2.3 Score=41.75 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=37.3
Q ss_pred CceEEeHHHHHHhhhcc-CCCC-CCCCCCCceEEEecCCCC-CCCcEEEeehhHHHHH
Q psy2417 230 AIEIIRFDEIERVGAQK-MFEE-VPPKPTDLCTICYTSGTT-GNPKGVMLTHGNVIAA 284 (391)
Q Consensus 230 ~~~~~~~~~l~~~~~~~-~~~~-~~~~~~~~a~i~~TSGST-G~PKgV~~th~~l~~~ 284 (391)
.+.+.+|+++...-... .... .-..++.+.+..-||||| |++|-+.+|...+-..
T Consensus 65 ~VPi~~Yedl~pyIeRi~~Ge~~~iL~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~~ 122 (581)
T 4eql_A 65 NVPIVSYEDIKPYLDRVVNGESSDVISARTITGFLLSSGTSGGAQKMMPWNNKYLDNL 122 (581)
T ss_dssp HSCCBCHHHHHHHHHHHHTTCCGGGTCSSCCCEEEEEEEEETTEEEEEEECHHHHHHH
T ss_pred hCCCccHHHHHHHHHHHHcCCCCcccCCCCCCeEEeCCCCCCCCccccccCHHHHHHH
Confidence 34567888875433211 1111 224677788999999999 7899999999987653
No 59
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=69.65 E-value=49 Score=32.00 Aligned_cols=102 Identities=11% Similarity=0.038 Sum_probs=73.8
Q ss_pred CCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCC
Q psy2417 254 KPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG 333 (391)
Q Consensus 254 ~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~ 333 (391)
.|+.+|++.... -.+-.+|++.+...+..+...+....+.++|++...++-+..+ +...++++..|+..+..+.
T Consensus 24 ~p~~~a~~~~~~-----~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~ 97 (590)
T 3kxw_A 24 SPNKKSCTFLNK-----ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPL-IQAFLGCLYAGCIAVPIYP 97 (590)
T ss_dssp CTTSEEEEEEET-----TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEECC
T ss_pred CCCCeEEEEEcC-----CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhH-HHHHHHHHHhCcEEEEecC
Confidence 467788776541 1356799999988776666554322288999999999876543 2334789999999887765
Q ss_pred -----CHHhHHHHHHhcCCcEEecChHHHHHHH
Q psy2417 334 -----DIKNLTEDMKTLKPTIMPAVPRLLNRMY 361 (391)
Q Consensus 334 -----~~~~l~~~i~~~~~t~~~~~P~~l~~l~ 361 (391)
....+...+...++.++...+.....+.
T Consensus 98 ~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 130 (590)
T 3kxw_A 98 PAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFT 130 (590)
T ss_dssp CCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHC
T ss_pred CCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 2356778889999999999888776654
No 60
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=69.64 E-value=36 Score=32.98 Aligned_cols=95 Identities=9% Similarity=0.069 Sum_probs=69.0
Q ss_pred CCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCC
Q psy2417 254 KPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG 333 (391)
Q Consensus 254 ~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~ 333 (391)
.++.+|++.. +..+|++.+...+..+...+....+.++|++...++-+..+ +...++++..|+..+..+.
T Consensus 52 ~p~~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~ 121 (563)
T 1amu_A 52 RPNNVAIVCE---------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDL-FIGILAVLKAGGAYVPIDI 121 (563)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEeC---------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEEeCC
Confidence 4667777631 24689999987776665544221288999999998866433 2334789999999888765
Q ss_pred --CHHhHHHHHHhcCCcEEecChHHHH
Q psy2417 334 --DIKNLTEDMKTLKPTIMPAVPRLLN 358 (391)
Q Consensus 334 --~~~~l~~~i~~~~~t~~~~~P~~l~ 358 (391)
..+.+...++..++..++..+....
T Consensus 122 ~~~~~~l~~il~~~~~~~li~~~~~~~ 148 (563)
T 1amu_A 122 EYPKERIQYILDDSQARMLLTQKHLVH 148 (563)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHH
T ss_pred CCcHHHHHHHHHhcCCCEEEEcCchhh
Confidence 6788999999999999998776544
No 61
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=68.54 E-value=49 Score=31.49 Aligned_cols=100 Identities=8% Similarity=-0.084 Sum_probs=72.8
Q ss_pred CCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCC
Q psy2417 254 KPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG 333 (391)
Q Consensus 254 ~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~ 333 (391)
.|+.+|++.. | +...+|++.+...+..+...+....+.++|++...++-+..+- ...++++..|+..+..+.
T Consensus 29 ~p~~~A~~~~--~-----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~G~~~vpl~~ 100 (517)
T 3r44_A 29 SPRLQAYVEP--S-----TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFC-CLFYGAAKLGAVAVPINT 100 (517)
T ss_dssp STTSEEEEEG--G-----GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCCeEEEeC--C-----cCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHH-HHHHHHHHhCcEEEecCc
Confidence 4677777653 1 2357999999887766665543222889999999998664332 233789999999998765
Q ss_pred --CHHhHHHHHHhcCCcEEecChHHHHHHH
Q psy2417 334 --DIKNLTEDMKTLKPTIMPAVPRLLNRMY 361 (391)
Q Consensus 334 --~~~~l~~~i~~~~~t~~~~~P~~l~~l~ 361 (391)
....+...++..++.+++..+.....+.
T Consensus 101 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 130 (517)
T 3r44_A 101 RLAAPEVSFILSDSGSKVVIYGAPSAPVID 130 (517)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHHH
T ss_pred ccCHHHHHHHHHhcCceEEEECCchHHHHH
Confidence 7788999999999999998776655543
No 62
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=68.35 E-value=40 Score=32.74 Aligned_cols=97 Identities=11% Similarity=0.094 Sum_probs=71.0
Q ss_pred CCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCC
Q psy2417 254 KPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG 333 (391)
Q Consensus 254 ~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~ 333 (391)
.|+.+|++..... | .+..+|.+.+...+..+...+....+.++|++...++-+..+- ...++++..|+..+..+.
T Consensus 69 ~pd~~Al~~~~~~--g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~-~~~lA~~~~Gav~vpl~~ 143 (580)
T 3etc_A 69 SPEKLAMIWCDDY--G--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFW-YCMLGLHKLGAIAVPATH 143 (580)
T ss_dssp CTTCEEEEEEESS--S--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEEEcCC--C--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH-HHHHHHHhCCEEEEeCCc
Confidence 5788888765431 2 3568999999887766655543222889999999998765432 233788999999887765
Q ss_pred --CHHhHHHHHHhcCCcEEecChH
Q psy2417 334 --DIKNLTEDMKTLKPTIMPAVPR 355 (391)
Q Consensus 334 --~~~~l~~~i~~~~~t~~~~~P~ 355 (391)
.+..+...++..++..++..+.
T Consensus 144 ~~~~~~l~~~l~~~~~~~ii~~~~ 167 (580)
T 3etc_A 144 MLKTRDIVYRIEKAGLKMIVCIAE 167 (580)
T ss_dssp TCCHHHHHHHHHHHTCCEEEEESS
T ss_pred cCCHHHHHHHHHhcCCCEEEEecc
Confidence 7789999999999999887654
No 63
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=67.06 E-value=42 Score=33.18 Aligned_cols=98 Identities=11% Similarity=0.069 Sum_probs=69.5
Q ss_pred CCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCC
Q psy2417 254 KPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG 333 (391)
Q Consensus 254 ~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~ 333 (391)
.++.+|++... ..+| .+..+|++.+...+..+...+....+.++|++..++|-+..+ ....++++..|+..+.+..
T Consensus 89 ~pd~~Al~~~~-~~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~-vva~lA~~~~Gav~vpl~~ 164 (652)
T 1pg4_A 89 NGDRTAIIWEG-DDTS--QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEA-AVAMLACARIGAVHSVIFG 164 (652)
T ss_dssp HTTSEEEEEEC-SSTT--CEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEEEc-CCCC--ceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHcCcEEEecCC
Confidence 35777877542 2222 346799999987766555543211188999999999977543 2334789999999887765
Q ss_pred --CHHhHHHHHHhcCCcEEecChH
Q psy2417 334 --DIKNLTEDMKTLKPTIMPAVPR 355 (391)
Q Consensus 334 --~~~~l~~~i~~~~~t~~~~~P~ 355 (391)
.++.+...++..++.+++....
T Consensus 165 ~~~~~~l~~~l~~~~~~~li~~~~ 188 (652)
T 1pg4_A 165 GFSPEAVAGCIIDSSSRLVITADE 188 (652)
T ss_dssp TSCHHHHHHHHHHHTCSEEEEESE
T ss_pred CCCHHHHHHHHHhcCCCEEEEcCc
Confidence 7889999999999999887543
No 64
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=66.42 E-value=31 Score=32.79 Aligned_cols=119 Identities=12% Similarity=0.023 Sum_probs=78.3
Q ss_pred cCCCceEEEeec--CCCC-ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCH-HHHHHHHHHHhcCCeEEEccC
Q psy2417 96 SNNGRCLGWRQN--ISRP-YQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCP-EWIITEQGAYCYSMIIVALYD 171 (391)
Q Consensus 96 ~pd~~al~~~~~--~~~~-~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~-e~i~~~lA~~~~G~~~vpl~~ 171 (391)
.++.+|++.... .+.+ ...+|.+.+...+..... ..++.+++++..++|-+. -.+..+++.+..|+..+.++.
T Consensus 142 ~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 218 (512)
T 3fce_A 142 KGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDK 218 (512)
T ss_dssp CTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCH
Confidence 456667665442 2222 467899988776655544 357889999999988553 334557888899998887765
Q ss_pred C--CCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcc------cCccEEEEecCc
Q psy2417 172 T--LGPDACAFIINQAEISVLIVDDDSKCNQIIDRAP------RCLKKIISIREV 218 (391)
Q Consensus 172 ~--~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~------~~l~~ii~~~~~ 218 (391)
. ..++.+...+++.++.+++..... ...++.... .+++.+++-+..
T Consensus 219 ~~~~~~~~~~~~i~~~~~t~~~~~P~~-~~~l~~~~~~~~~~~~~lr~~~~~G~~ 272 (512)
T 3fce_A 219 DMIARPKDLFASLEQSDIQVWTSTPSF-AEMCLMEASFSESMLPNMKTFLFCGEV 272 (512)
T ss_dssp HHHHSHHHHHHHHHHHCCCEEEECHHH-HHHHTTSTTCSTTTSTTCCEEEECSSC
T ss_pred HHhhCHHHHHHHHHHcCCcEEEecHHH-HHHHHhhccccchhCccccEEEEecCc
Confidence 3 577889999999999998886642 222222111 156777766543
No 65
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=64.05 E-value=49 Score=32.00 Aligned_cols=93 Identities=12% Similarity=0.105 Sum_probs=68.1
Q ss_pred CCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCC
Q psy2417 254 KPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG 333 (391)
Q Consensus 254 ~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~ 333 (391)
.++.+|++. .+-.+|++.+...+..+...+....+.++|++...++-+..+- ...++++..|+..+..+.
T Consensus 88 ~pd~~A~~~---------~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~-~~~lA~~~~G~~~vpl~~ 157 (570)
T 4gr5_A 88 APDAVALLH---------EADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMV-VALLAVLKAGGGYTMLDP 157 (570)
T ss_dssp CTTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEC---------CCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH-HHHHHHHHHCCEEEEcCC
Confidence 467777764 1236899999887766665543222889999999998765432 233789999999888765
Q ss_pred --CHHhHHHHHHhcCCcEEecChHH
Q psy2417 334 --DIKNLTEDMKTLKPTIMPAVPRL 356 (391)
Q Consensus 334 --~~~~l~~~i~~~~~t~~~~~P~~ 356 (391)
..+.+...++..++..++.....
T Consensus 158 ~~~~~~l~~~l~~~~~~~~i~~~~~ 182 (570)
T 4gr5_A 158 QFPVERLALSLEDTGAPLLVTSRPL 182 (570)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECTTT
T ss_pred CChHHHHHHHHHhcCCCEEEecchh
Confidence 77899999999999998876543
No 66
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=63.05 E-value=56 Score=30.98 Aligned_cols=119 Identities=7% Similarity=-0.072 Sum_probs=78.9
Q ss_pred cCCCceEEEeec--CCCC-ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHH-HHHHHHHHHhcCCeEEEccC
Q psy2417 96 SNNGRCLGWRQN--ISRP-YQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPE-WIITEQGAYCYSMIIVALYD 171 (391)
Q Consensus 96 ~pd~~al~~~~~--~~~~-~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e-~i~~~lA~~~~G~~~vpl~~ 171 (391)
.++.+|++.... .+.+ ...+|.+.+...+..+... .++.+++++..+++-+.. .+..+++++..|+..+....
T Consensus 141 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 217 (511)
T 3e7w_A 141 KEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICAD---FPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTK 217 (511)
T ss_dssp CTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHH---STTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHh---cCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcCh
Confidence 356677665442 2333 4678999887776655544 578889999998886543 34557888999998887655
Q ss_pred C--CCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcc------cCccEEEEecCc
Q psy2417 172 T--LGPDACAFIINQAEISVLIVDDDSKCNQIIDRAP------RCLKKIISIREV 218 (391)
Q Consensus 172 ~--~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~------~~l~~ii~~~~~ 218 (391)
. ..++.+...+++.++.+++..... ...++.... ..++.++.-+..
T Consensus 218 ~~~~~~~~~~~~i~~~~~t~~~~~P~~-~~~l~~~~~~~~~~~~~l~~~~~~G~~ 271 (511)
T 3e7w_A 218 DAVNKPKVLFEELKKSGLNVWTSTPSF-VQMCLMDPGFSQDLLPHADTFMFCGEV 271 (511)
T ss_dssp HHHHSHHHHHHHHHHHCCSEEEECHHH-HHHHHTSTTCSTTTCTTCCEEEECSSC
T ss_pred hhhcCHHHHHHHHHHcCCcEEEecHHH-HHHHHhccccccccCCcccEEEEecCC
Confidence 3 567889999999999998887642 333332211 156666665543
No 67
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=61.82 E-value=23 Score=37.08 Aligned_cols=99 Identities=15% Similarity=0.149 Sum_probs=72.4
Q ss_pred CCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCC
Q psy2417 254 KPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG 333 (391)
Q Consensus 254 ~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~ 333 (391)
.++.+|++.-. + +..+|++.+...+..+...+....+.++|++...++-+..+ +...++++..|+..+..+.
T Consensus 74 ~pd~~Al~~~~---~----~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~-~v~~lA~~~~Ga~~vpl~~ 145 (979)
T 3tsy_A 74 FATKPCLINGP---T----GHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEF-VLSFLAASFRGATATAANP 145 (979)
T ss_dssp TTTSEEEEETT---T----CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHH-HHHHHHHHHHTCEEEEECT
T ss_pred CCCCeEEEECC---C----CcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHH-HHHHHHHHHcCCEEEeeCC
Confidence 57788876522 2 24689999988776665544322288999999999876432 2233789999999998765
Q ss_pred --CHHhHHHHHHhcCCcEEecChHHHHHH
Q psy2417 334 --DIKNLTEDMKTLKPTIMPAVPRLLNRM 360 (391)
Q Consensus 334 --~~~~l~~~i~~~~~t~~~~~P~~l~~l 360 (391)
.++.+...+++.++.+++..+.....+
T Consensus 146 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 174 (979)
T 3tsy_A 146 FFTPAEIAKQAKASNTKLIITEARYVDKI 174 (979)
T ss_dssp TSCHHHHHHHHHHHTEEEEEECSTTTTTS
T ss_pred CCCHHHHHHHHHHcCCeEEEEChHHHHHH
Confidence 788999999999999999887665544
No 68
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=57.88 E-value=88 Score=30.63 Aligned_cols=118 Identities=14% Similarity=0.040 Sum_probs=78.1
Q ss_pred cCCCceEEEeec--CCCC-ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHH-HHHHHHHHHhcCCeEEEcc-
Q psy2417 96 SNNGRCLGWRQN--ISRP-YQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPE-WIITEQGAYCYSMIIVALY- 170 (391)
Q Consensus 96 ~pd~~al~~~~~--~~~~-~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e-~i~~~lA~~~~G~~~vpl~- 170 (391)
.|+.+|++.... .+.+ ...+|.+.+...+. .....++.+++++..+++-+.+ .+..+++.+..|+..+..+
T Consensus 162 ~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 237 (620)
T 4dg8_A 162 AADQIAYINFSSGTTGRPKAIACTHAGITRLCL----GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDL 237 (620)
T ss_dssp CTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHS----SCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCS
T ss_pred CCCCeEEEEECCCccccCeEEEEchHHHHHHHH----HHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCcc
Confidence 367777665442 2333 46788887754332 2234578899999998886543 3445778889999877763
Q ss_pred CCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc---CccEEEEecCc
Q psy2417 171 DTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR---CLKKIISIREV 218 (391)
Q Consensus 171 ~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~---~l~~ii~~~~~ 218 (391)
....++.+...+++.++..+...... +..+.+..+. +++.+++-++.
T Consensus 238 ~~~~~~~~~~~i~~~~vt~~~~~Ps~-~~~l~~~~~~~l~~lr~v~~gGe~ 287 (620)
T 4dg8_A 238 GPLDPGVLRQLIGERGADSAWLTASL-FNTLVDLDPDCLGGLRQLLTGGDI 287 (620)
T ss_dssp SSCCHHHHHHHHHTTCCCEEEEEHHH-HHHHHHHCGGGGTTCSEEEEESSC
T ss_pred ccCCHHHHHHHHHHhCCcEEEccHHH-HHHHHhcChhhCCCccEEEEEeCc
Confidence 36788999999999999988886642 3333332221 67777776654
No 69
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=57.87 E-value=49 Score=29.67 Aligned_cols=67 Identities=7% Similarity=-0.029 Sum_probs=48.2
Q ss_pred HHHHhCC-CCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCC
Q psy2417 129 SGLLGLG-VNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDD 195 (391)
Q Consensus 129 ~~L~~~g-v~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~ 195 (391)
....+.| +++|+.|.+....+-.-....+++...|...+.+-|...+..-...++..++++++++..
T Consensus 60 ~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 60 DKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 3444556 488888655566677777777888888987666555555556667788999999999764
No 70
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=56.23 E-value=55 Score=31.08 Aligned_cols=91 Identities=11% Similarity=0.016 Sum_probs=64.8
Q ss_pred CCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCC
Q psy2417 254 KPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG 333 (391)
Q Consensus 254 ~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~ 333 (391)
.++.++++.. +-.+|++.+...+..+...+....+.++|++...++-+..+ +...++++..|+..+..+.
T Consensus 17 ~p~~~a~~~~---------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~-~~~~lA~~~~G~v~vpl~~ 86 (521)
T 3l8c_A 17 QADFPVYDCL---------GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDM-LATFVALTKSGHAYIPVDV 86 (521)
T ss_dssp STTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHH-HHHHHHHHHTTCCEEEEET
T ss_pred CCCCcceecC---------CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEecCc
Confidence 3566666531 24589999988776666554322278899998888765432 2233788999999887755
Q ss_pred --CHHhHHHHHHhcCCcEEecCh
Q psy2417 334 --DIKNLTEDMKTLKPTIMPAVP 354 (391)
Q Consensus 334 --~~~~l~~~i~~~~~t~~~~~P 354 (391)
.++.+...++..++..++...
T Consensus 87 ~~~~~~l~~il~~~~~~~ii~~~ 109 (521)
T 3l8c_A 87 HSAPERILAIIEIAKPSLIIAIE 109 (521)
T ss_dssp TSCHHHHHHHHHHSCCSEEEESS
T ss_pred cccHHHHHHHHHhCCCCEEEecC
Confidence 778999999999999988754
No 71
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=55.79 E-value=1.4e+02 Score=29.06 Aligned_cols=117 Identities=9% Similarity=-0.020 Sum_probs=78.0
Q ss_pred CCCceEEEeec--CCCC-ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHH---HHHHHHhcCCeEEEcc
Q psy2417 97 NNGRCLGWRQN--ISRP-YQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWII---TEQGAYCYSMIIVALY 170 (391)
Q Consensus 97 pd~~al~~~~~--~~~~-~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~---~~lA~~~~G~~~vpl~ 170 (391)
++.+|++.... .+.+ ...+|.+.+...+......+ ++.+++++..+++-+..+-. .+++.+..|+..+..+
T Consensus 183 ~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~---~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~ 259 (617)
T 3rg2_A 183 ADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC---QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAA 259 (617)
T ss_dssp TTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECS
T ss_pred CCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc---CCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeC
Confidence 56677655432 2333 56789998877776665544 68899999988886544433 4788888898887765
Q ss_pred CCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhc--------ccCccEEEEecCc
Q psy2417 171 DTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRA--------PRCLKKIISIREV 218 (391)
Q Consensus 171 ~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~--------~~~l~~ii~~~~~ 218 (391)
. .....+...+++.++.++...... ...++... ..+++.+++-+..
T Consensus 260 ~-~~~~~~~~~i~~~~~t~~~~~P~~-~~~l~~~~~~~~~~~~l~~lr~i~~gGe~ 313 (617)
T 3rg2_A 260 D-PSATLCFPLIEKHQVNVTALVPPA-VSLWLQALIEGESRAQLASLKLLQVGGAR 313 (617)
T ss_dssp S-CCHHHHHHHHHHTTCCEEEECHHH-HHHHHHHHHTTCCTTTTTTCCEEEEESSC
T ss_pred C-CCHHHHHHHHHHhCCcEEEcchHH-HHHHHHhhhcccccccCCCccEEEEcCCc
Confidence 4 577888889999999998887642 33332211 1156777766553
No 72
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=54.73 E-value=63 Score=29.07 Aligned_cols=115 Identities=11% Similarity=0.037 Sum_probs=71.0
Q ss_pred cCCCceEEEeec--CCCC-ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCH-HHHHHHHHHHhcCCeEEEccC
Q psy2417 96 SNNGRCLGWRQN--ISRP-YQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCP-EWIITEQGAYCYSMIIVALYD 171 (391)
Q Consensus 96 ~pd~~al~~~~~--~~~~-~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~-e~i~~~lA~~~~G~~~vpl~~ 171 (391)
+.|.+|++-... .+.+ ...+|.+.+...+..++.. .++.+++++..++|-+. -.+..++..+..|+..+..++
T Consensus 35 ~~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~ 111 (358)
T 4gs5_A 35 LGGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKA---LSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEP 111 (358)
T ss_dssp HHTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECC
T ss_pred CCCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHH---hCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCc
Confidence 456777665432 2332 4679999988776665554 57899999998888553 334455666777887776666
Q ss_pred CCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc-----CccEEEEecC
Q psy2417 172 TLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR-----CLKKIISIRE 217 (391)
Q Consensus 172 ~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-----~l~~ii~~~~ 217 (391)
... ....+++.++..+..... .+..+++.... +++.+++-..
T Consensus 112 ~~~---~~~~i~~~~~t~~~~~P~-~l~~ll~~~~~~~~l~~lr~v~~gG~ 158 (358)
T 4gs5_A 112 TAN---PLAGLDHADFDFVAMVPM-QLQSILENSATSGQVDRLGKVLLGGA 158 (358)
T ss_dssp CSC---TTTTCSSCCCSEEEECHH-HHHHHHHCTTTGGGGGGGCSEEECSS
T ss_pred ccc---HHHHHHHhCCeEEEcChH-HHHHhhccccccccCCcceEEEEccc
Confidence 443 234567778888777653 23344332211 5666666554
No 73
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=49.05 E-value=1.6e+02 Score=27.79 Aligned_cols=95 Identities=7% Similarity=-0.053 Sum_probs=66.8
Q ss_pred cCCCceEEEeec--CCCC-ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHH--HHHHHHHHHhcCCeEEEcc
Q psy2417 96 SNNGRCLGWRQN--ISRP-YQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPE--WIITEQGAYCYSMIIVALY 170 (391)
Q Consensus 96 ~pd~~al~~~~~--~~~~-~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e--~i~~~lA~~~~G~~~vpl~ 170 (391)
.++.+|++.... .+.+ ...+|.+.+...+..+...+ ++.+++++...++-... ++..+++.+..|+..+..
T Consensus 153 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~- 228 (505)
T 3nyq_A 153 DDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHL- 228 (505)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEEC-
T ss_pred CCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEEC-
Confidence 456677665542 2333 46799999988887776665 67889998887875433 334578889999988766
Q ss_pred CCCCHHHHHHHHHhcCccEEEEcCC
Q psy2417 171 DTLGPDACAFIINQAEISVLIVDDD 195 (391)
Q Consensus 171 ~~~~~~~l~~il~~~~~~~vi~~~~ 195 (391)
+.+.++.+...+ +.++..++....
T Consensus 229 ~~~~~~~~~~~i-~~~~t~~~~~P~ 252 (505)
T 3nyq_A 229 GRFSTEGAAREL-NDGATMLFGVPT 252 (505)
T ss_dssp SSCCHHHHHHHH-TTTCCEEEECHH
T ss_pred CCCChHHHHHHH-hhCCeEEEehHH
Confidence 456777777777 668888777654
No 74
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=46.79 E-value=1.7e+02 Score=27.91 Aligned_cols=99 Identities=7% Similarity=-0.068 Sum_probs=67.7
Q ss_pred CCCCceEEEecCCCCCCC--cEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEe
Q psy2417 254 KPTDLCTICYTSGTTGNP--KGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYY 331 (391)
Q Consensus 254 ~~~~~a~i~~TSGSTG~P--KgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~ 331 (391)
.|+.+|++... |..+.. .+-.+|++.+...+..+...+...-. ++|++...++-+..+- ...++++..|+..+..
T Consensus 33 ~p~~~A~~~~~-~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~-~~~lA~~~~Gav~vpl 109 (562)
T 3ite_A 33 HPEWKAVEVAT-GFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAF-AIIVGIMKSGNTYVPI 109 (562)
T ss_dssp CTTSEEEEEEE-CC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHH-HHHHHHHHTTCEEEEC
T ss_pred CCCchhhhccc-ccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHH-HHHHHHHHhCCEEEec
Confidence 46778876543 223333 24679999998877666655432215 6999999988765432 2347899999998887
Q ss_pred CC--CHHhHHHHHHhcCCcEEecChH
Q psy2417 332 SG--DIKNLTEDMKTLKPTIMPAVPR 355 (391)
Q Consensus 332 ~~--~~~~l~~~i~~~~~t~~~~~P~ 355 (391)
+. ....+...++..++..++....
T Consensus 110 ~~~~~~~~l~~~l~~~~~~~~i~~~~ 135 (562)
T 3ite_A 110 EAGLPNDRKSFLLRDSRAAMAFVCDN 135 (562)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECTT
T ss_pred CCcCHHHHHHHHHHhcCCCEEEEccc
Confidence 65 6788999999999998776543
No 75
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=44.83 E-value=1.5e+02 Score=28.30 Aligned_cols=88 Identities=13% Similarity=-0.047 Sum_probs=65.4
Q ss_pred EEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCC--C-------HHhHHHHHH
Q psy2417 273 GVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG--D-------IKNLTEDMK 343 (391)
Q Consensus 273 gV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~--~-------~~~l~~~i~ 343 (391)
+-.+|++.+...+..+...+....+.++|++...++-+..+ +...++++..|+..+..+. . ...+...++
T Consensus 47 ~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~ 125 (576)
T 3gqw_A 47 EDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEF-VEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLA 125 (576)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHH
T ss_pred eeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHH
Confidence 46799999988876666554322278999999999876533 2333789999999887754 2 577888999
Q ss_pred hcCCcEEecChHHHHHHH
Q psy2417 344 TLKPTIMPAVPRLLNRMY 361 (391)
Q Consensus 344 ~~~~t~~~~~P~~l~~l~ 361 (391)
..++..+.........+.
T Consensus 126 ~~~~~~ii~~~~~~~~~~ 143 (576)
T 3gqw_A 126 SCQPAAIITGDEWLPLVN 143 (576)
T ss_dssp HHCCSEEEECGGGHHHHH
T ss_pred hcCCCEEEecHHHHHHHH
Confidence 999999998877666544
No 76
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=43.96 E-value=1.2e+02 Score=27.22 Aligned_cols=65 Identities=11% Similarity=-0.022 Sum_probs=49.6
Q ss_pred HHhCC-CCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCC
Q psy2417 131 LLGLG-VNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDD 195 (391)
Q Consensus 131 L~~~g-v~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~ 195 (391)
+.+.| +.+|.+..+....+-.-+...++|.+.|...+.+-|...+..-...++..++++++++..
T Consensus 77 a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 77 AEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 34444 677876667777888888888899999987666656666666677899999999999754
No 77
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=42.14 E-value=1.4e+02 Score=26.33 Aligned_cols=79 Identities=14% Similarity=0.087 Sum_probs=51.8
Q ss_pred EEeHHHHHHHHHHHH---HHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEE
Q psy2417 114 WIHYNQALLRARNFG---SGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVL 190 (391)
Q Consensus 114 ~~Ty~el~~~~~~la---~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v 190 (391)
.+++.+......... +.+...++++|++|.|...-+.-..++.+|....|+.++.++.+ +++ ..+.+..++..+
T Consensus 136 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~r-~~~~~~~Ga~~~ 212 (348)
T 4eez_A 136 GLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QDK-LNLAKKIGADVT 212 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HHH-HHHHHHTTCSEE
T ss_pred CCCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HHH-hhhhhhcCCeEE
Confidence 467766544333222 33455689999999999887777777777777777777666543 344 355667788877
Q ss_pred EEcCC
Q psy2417 191 IVDDD 195 (391)
Q Consensus 191 i~~~~ 195 (391)
+-..+
T Consensus 213 i~~~~ 217 (348)
T 4eez_A 213 INSGD 217 (348)
T ss_dssp EEC-C
T ss_pred EeCCC
Confidence 76554
No 78
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=39.69 E-value=1.4e+02 Score=26.24 Aligned_cols=65 Identities=12% Similarity=0.055 Sum_probs=44.6
Q ss_pred HHhCC-CCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCC
Q psy2417 131 LLGLG-VNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDD 195 (391)
Q Consensus 131 L~~~g-v~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~ 195 (391)
+.+.| +.||....+....+-.-....+++.+.|...+.+-|...+..-...++..++++++++..
T Consensus 57 a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 57 AEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 44556 456654444566676777777788899987666555444555667888899999999863
No 79
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=38.43 E-value=1.4e+02 Score=27.74 Aligned_cols=65 Identities=11% Similarity=0.007 Sum_probs=47.4
Q ss_pred HHhCC-CCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCC
Q psy2417 131 LLGLG-VNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDD 195 (391)
Q Consensus 131 L~~~g-v~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~ 195 (391)
..+.| +.+|....+....+-.-....+++.+.|...+.+-|...+..-...++..++++++++..
T Consensus 165 A~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~~ 230 (430)
T 4aec_A 165 AEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPA 230 (430)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECCC
Confidence 34566 467765556666677777777888899987666656555666677889999999999753
No 80
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=37.88 E-value=1.3e+02 Score=25.85 Aligned_cols=63 Identities=11% Similarity=0.040 Sum_probs=48.3
Q ss_pred HHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHH
Q psy2417 87 DAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWI 153 (391)
Q Consensus 87 ~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i 153 (391)
.++++..+.-|+...+...|...-+|...|..++.+++.+.+..|.+.|+. ..+.+-|+...+
T Consensus 19 tv~~~i~~~lP~~~~iy~~D~a~~PYG~ks~~~i~~~~~~~~~~L~~~g~~----~IVIACNTa~~~ 81 (269)
T 3ist_A 19 TVVREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAKFTWEMTNFLVDRGIK----MLVIACNTATAA 81 (269)
T ss_dssp HHHHHHHHHCTTCCEEEEECGGGCCCTTSCHHHHHHHHHHHHHHHHHTTCS----EEEECCHHHHHH
T ss_pred HHHHHHHHHCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC----EEEEeCCCccHH
Confidence 456666677899888888776566788899999999999999999988754 444555665543
No 81
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=37.85 E-value=75 Score=28.77 Aligned_cols=64 Identities=8% Similarity=-0.038 Sum_probs=41.6
Q ss_pred HHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEccC-----CCCHHHHHHHHHhcC--ccEEEEcC
Q psy2417 128 GSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYD-----TLGPDACAFIINQAE--ISVLIVDD 194 (391)
Q Consensus 128 a~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~-----~~~~~~l~~il~~~~--~~~vi~~~ 194 (391)
...|...++++||.|.+-.+....+ .-++...|+.++.++. ....+.+...+...+ .++|+...
T Consensus 67 ~~al~~l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~~ 137 (377)
T 3ju7_A 67 MAAIQLKKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPYA 137 (377)
T ss_dssp HHHHHHHSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCBC
T ss_pred HHHHHHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEEC
Confidence 3344455788999998876655544 3456678987665543 247888888885444 67776543
No 82
>3gdw_A Sigma-54 interaction domain protein; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=36.95 E-value=1.4e+02 Score=22.81 Aligned_cols=90 Identities=12% Similarity=0.109 Sum_probs=52.6
Q ss_pred CCCCCcEEEeehhH-HHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHH-HHHHH------hC-cEEEEeCC-CHH
Q psy2417 267 TTGNPKGVMLTHGN-VIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCE-SAMFL------VG-GSIGYYSG-DIK 336 (391)
Q Consensus 267 STG~PKgV~~th~~-l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~-~~~L~------~G-~~vv~~~~-~~~ 336 (391)
|+++...++++|++ +...+....+..- +........+|+.....-... +.... .| +-+++.+- +|.
T Consensus 1 ~~~~igiiIvtHG~s~A~~l~~~a~~i~----G~~~~~aid~~~~~~~~~~~~~i~~~i~~~~~d~g~GVLiL~DmGSp~ 76 (139)
T 3gdw_A 1 SNANVGVFVLMHGDSTASSMLKTAQELL----GTSIGTAMNMPLTMEVQTMYEQLRNQVITQKESLNNGILLLTDMGSLN 76 (139)
T ss_dssp CCCCCEEEEEEESSSHHHHHHHHHHHHH----TCCCCEEEEECTTSCHHHHHHHHHHHHHTSTGGGTTCEEEEECSGGGG
T ss_pred CCCceeEEEEcCCHHHHHHHHHHHHHHc----CcccEEEEEccCCCCHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCCHH
Confidence 46778899999999 9988877777652 234455555666544332222 32222 34 55666653 788
Q ss_pred hHHHHHHhc---CCcEEec--ChHHHHHH
Q psy2417 337 NLTEDMKTL---KPTIMPA--VPRLLNRM 360 (391)
Q Consensus 337 ~l~~~i~~~---~~t~~~~--~P~~l~~l 360 (391)
.+...+.+. ++.++.. +|-+++.+
T Consensus 77 n~a~~l~~~~~~~v~vI~gvnlpmllea~ 105 (139)
T 3gdw_A 77 SFGNMLFEETGIRTKAITMTSTMIVLEAI 105 (139)
T ss_dssp GHHHHHHHHHCCCEEEECSCCHHHHHHHH
T ss_pred HHHHHHHHhhCCCEEEEeCCCHHHHHHHH
Confidence 887766643 3444332 45555544
No 83
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=34.89 E-value=1.9e+02 Score=25.19 Aligned_cols=66 Identities=6% Similarity=-0.026 Sum_probs=43.5
Q ss_pred HHHHhCCC-CCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCC
Q psy2417 129 SGLLGLGV-NPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDD 195 (391)
Q Consensus 129 ~~L~~~gv-~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~ 195 (391)
..+.+.|. ++|+.|.. ...+-.-....+++.+.|...+.+-|...+..-...++..++++++++..
T Consensus 56 ~~a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 56 QAAEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp HHHHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCC
Confidence 34445554 56665544 55666666666777789987666555444455566778899999999863
No 84
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=34.86 E-value=1.4e+02 Score=26.30 Aligned_cols=56 Identities=2% Similarity=-0.108 Sum_probs=33.0
Q ss_pred CCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEccC--C--CCHHHHHHHHHhcCccEEEEc
Q psy2417 137 NPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYD--T--LGPDACAFIINQAEISVLIVD 193 (391)
Q Consensus 137 ~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~--~--~~~~~l~~il~~~~~~~vi~~ 193 (391)
++|+.|.+..+..+-+.-...++...|+.++.++. + ...+.+...++. ++++|+..
T Consensus 87 ~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 146 (384)
T 1eg5_A 87 KRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSIM 146 (384)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEEE
T ss_pred CCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEEE
Confidence 56788777666555554444444566776655443 2 356777776653 56666654
No 85
>2ayi_A Aminopeptidase T; metallopeptidase, hydrolase; 3.70A {Thermus thermophilus} SCOP: e.60.1.1
Probab=34.59 E-value=1.3e+02 Score=27.76 Aligned_cols=49 Identities=8% Similarity=0.038 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhC--CCCCCCeEEEEccC-CHHHHHHHH-HHHhcCCeEEEc
Q psy2417 121 LLRARNFGSGLLGL--GVNPGSFVGIYSQN-CPEWIITEQ-GAYCYSMIIVAL 169 (391)
Q Consensus 121 ~~~~~~la~~L~~~--gv~~g~~V~i~~~~-s~e~i~~~l-A~~~~G~~~vpl 169 (391)
..+..++|..+.+. ++++|+.|.|..+- ..+++-++. ++.++|+..|.+
T Consensus 5 ~~~l~k~A~~~v~~~~~lq~Ge~vlI~~~~~~~~l~r~l~~~a~~~Ga~~v~v 57 (408)
T 2ayi_A 5 KRNLEKLAELAIRVGLNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTV 57 (408)
T ss_dssp HHHHHHHHHHHHHTTTCCCTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHHhCcCCCCCCEEEEEECCchHHHHHHHHHHHHHcCCceEEE
Confidence 45677788888764 78999999999984 456665555 788899987753
No 86
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=33.98 E-value=1.3e+02 Score=26.75 Aligned_cols=56 Identities=4% Similarity=-0.032 Sum_probs=34.7
Q ss_pred CCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEccCC-------CCHHHHHHHHHhcCccEEEEcC
Q psy2417 136 VNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDT-------LGPDACAFIINQAEISVLIVDD 194 (391)
Q Consensus 136 v~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~-------~~~~~l~~il~~~~~~~vi~~~ 194 (391)
.++|+.|.+..+....+ ..++...|+.++.++.. ...+.+...+++.++++|+...
T Consensus 106 ~~~gd~vl~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~ 168 (391)
T 3dzz_A 106 TSPGDQILVQEPVYNMF---YSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCN 168 (391)
T ss_dssp SCTTCEEEECSSCCHHH---HHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEES
T ss_pred CCCCCeEEECCCCcHHH---HHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEEC
Confidence 35677776655544443 33455677766665542 6778888888766677665543
No 87
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=32.23 E-value=2.6e+02 Score=24.49 Aligned_cols=54 Identities=6% Similarity=0.067 Sum_probs=30.6
Q ss_pred CCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEc--cC--CCCHHHHHHHHHhcCccEEEEc
Q psy2417 136 VNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVAL--YD--TLGPDACAFIINQAEISVLIVD 193 (391)
Q Consensus 136 v~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl--~~--~~~~~~l~~il~~~~~~~vi~~ 193 (391)
+++|+.|.+..+.-..+. .++...|+.++.+ ++ ....+.+...++. +.++|+..
T Consensus 105 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 162 (363)
T 3ffh_A 105 LDTTTNTVMATPTFVQYR---QNALIEGAEVREIPLLQDGEHDLEGMLNAIDE-KTTIVWIC 162 (363)
T ss_dssp CSTTCEEEEEESSCHHHH---HHHHHHTCEEEEEECCTTSCCCHHHHHHHCCT-TEEEEEEE
T ss_pred ccCCCEEEEcCCChHHHH---HHHHHcCCEEEEecCCCCCCcCHHHHHHhccc-CCCEEEEe
Confidence 457888877776554433 3445556655444 32 2356677776643 56666543
No 88
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=31.98 E-value=1.3e+02 Score=26.70 Aligned_cols=85 Identities=7% Similarity=0.010 Sum_probs=48.5
Q ss_pred CCCCCCeEEEEccCCH------HHHHHHHH-HHhcCCeEEEccCCC------------CHHHHHHHHHhcCccEEEEcCC
Q psy2417 135 GVNPGSFVGIYSQNCP------EWIITEQG-AYCYSMIIVALYDTL------------GPDACAFIINQAEISVLIVDDD 195 (391)
Q Consensus 135 gv~~g~~V~i~~~~s~------e~i~~~lA-~~~~G~~~vpl~~~~------------~~~~l~~il~~~~~~~vi~~~~ 195 (391)
-+++||+|+|++|.+. +-+-.... +-..|..++.-...+ ..+++..++.+-.++.|+|...
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIG 87 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCC
Confidence 3688999999999752 22222222 234577665433221 1235777888899999999755
Q ss_pred -cchhHHHhhccc-----CccEEEEecCcc
Q psy2417 196 -SKCNQIIDRAPR-----CLKKIISIREVR 219 (391)
Q Consensus 196 -~~~~~~~~~~~~-----~l~~ii~~~~~~ 219 (391)
.-..++++.+.- +-|.++-..+..
T Consensus 88 G~g~~rlL~~LD~~~i~~~PK~~~GySDiT 117 (327)
T 4h1h_A 88 GFNSNQLLPYLDYDLISENPKILCGFSDIT 117 (327)
T ss_dssp CSCGGGGGGGCCHHHHHHSCCEEEECTTHH
T ss_pred chhHHHHhhhcchhhhccCCeEEEeccccc
Confidence 223344433221 445555555543
No 89
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=31.07 E-value=1.8e+02 Score=26.09 Aligned_cols=61 Identities=16% Similarity=0.060 Sum_probs=40.1
Q ss_pred HHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEccCC----CCHHHHHHHHHhc--CccEEEEcC
Q psy2417 131 LLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDT----LGPDACAFIINQA--EISVLIVDD 194 (391)
Q Consensus 131 L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~----~~~~~l~~il~~~--~~~~vi~~~ 194 (391)
+...++++|+.|.+..+....+.. ++...|+.++.++.+ ...+.+...++.. +.++|+...
T Consensus 64 ~~~l~~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~ 130 (394)
T 1o69_A 64 LRVAGVKQDDIVLASSFTFIASVA---PICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH 130 (394)
T ss_dssp HHHTTCCTTCEEEEESSSCGGGTH---HHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred HHHcCCCCCCEEEECCCccHHHHH---HHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC
Confidence 334457889999888877666543 344578776655432 4678888888764 567666544
No 90
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=30.78 E-value=71 Score=27.68 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=30.2
Q ss_pred HHHHHHHHhCCCCCCCeEEEEccCC--------H-HHHHHHHHHHh-cCCeEEEc
Q psy2417 125 RNFGSGLLGLGVNPGSFVGIYSQNC--------P-EWIITEQGAYC-YSMIIVAL 169 (391)
Q Consensus 125 ~~la~~L~~~gv~~g~~V~i~~~~s--------~-e~i~~~lA~~~-~G~~~vpl 169 (391)
+.|...|+++||++|+.|.|.+.=+ + ..+-+++.++. .|-.++|-
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsSl~~lG~v~gg~~~vi~AL~~~vg~~GTLvmPt 72 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSSLSSIGWISGGAVAVVEALMEVITEEGTIIMPT 72 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECTGGGCCBTTHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred HHHHHHHHHcCCCCCCEEEEEechHHhCCCCCCHHHHHHHHHHHhCCCCeEEEec
Confidence 4688899999999999999988632 2 23334444444 45555564
No 91
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=30.73 E-value=1.9e+02 Score=25.24 Aligned_cols=77 Identities=10% Similarity=-0.017 Sum_probs=48.8
Q ss_pred EEeHHHHHHHHHH---HHHHHHhCCCCCCCeEEEEc-cCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccE
Q psy2417 114 WIHYNQALLRARN---FGSGLLGLGVNPGSFVGIYS-QNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISV 189 (391)
Q Consensus 114 ~~Ty~el~~~~~~---la~~L~~~gv~~g~~V~i~~-~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~ 189 (391)
.+++.+....... --+.|...++++|++|.|.. .-.+-..++.+| ...|+.++... +.++ ...+++.++..
T Consensus 125 ~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a-~~~Ga~vi~~~---~~~~-~~~~~~lGa~~ 199 (321)
T 3tqh_A 125 KLSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLA-KQKGTTVITTA---SKRN-HAFLKALGAEQ 199 (321)
T ss_dssp TSCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEE---CHHH-HHHHHHHTCSE
T ss_pred CCCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHH-HHcCCEEEEEe---ccch-HHHHHHcCCCE
Confidence 4677766543222 12334556899999999997 455555555555 45688666554 3455 56677888887
Q ss_pred EEEcCC
Q psy2417 190 LIVDDD 195 (391)
Q Consensus 190 vi~~~~ 195 (391)
++....
T Consensus 200 ~i~~~~ 205 (321)
T 3tqh_A 200 CINYHE 205 (321)
T ss_dssp EEETTT
T ss_pred EEeCCC
Confidence 776543
No 92
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=30.33 E-value=2.7e+02 Score=24.14 Aligned_cols=65 Identities=11% Similarity=-0.021 Sum_probs=43.5
Q ss_pred HHHhCCC-CCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCC
Q psy2417 130 GLLGLGV-NPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDD 195 (391)
Q Consensus 130 ~L~~~gv-~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~ 195 (391)
.+.+.|. ++|+.|.... .+-.-....+++.+.|...+.+-|...+..-...++..++++++++..
T Consensus 51 ~a~~~g~~~~g~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 116 (303)
T 2v03_A 51 EAEKRGEIKPGDVLIEAT-SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKE 116 (303)
T ss_dssp HHHHTTCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECTT
T ss_pred HHHHcCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 3444553 5666655544 455556666677789987666655555555667888899999999864
No 93
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=29.64 E-value=2e+02 Score=25.34 Aligned_cols=86 Identities=9% Similarity=-0.005 Sum_probs=52.8
Q ss_pred EeHHHHHHHHHH---HHHHHHhC--CCCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccE
Q psy2417 115 IHYNQALLRARN---FGSGLLGL--GVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISV 189 (391)
Q Consensus 115 ~Ty~el~~~~~~---la~~L~~~--gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~ 189 (391)
+++.+....... --+.|... ++++|++|.|...-.+-..++.+|-..-|+.++.++. +++++. ++++.++..
T Consensus 143 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~--~~~~~~-~~~~lGa~~ 219 (345)
T 3jv7_A 143 LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDL--DDDRLA-LAREVGADA 219 (345)
T ss_dssp CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--CHHHHH-HHHHTTCSE
T ss_pred CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHH-HHHHcCCCE
Confidence 677665433222 12344443 7899999999988666777777776665666666654 344444 557788888
Q ss_pred EEEcCCcchhHHHh
Q psy2417 190 LIVDDDSKCNQIID 203 (391)
Q Consensus 190 vi~~~~~~~~~~~~ 203 (391)
++.......+.+.+
T Consensus 220 ~i~~~~~~~~~v~~ 233 (345)
T 3jv7_A 220 AVKSGAGAADAIRE 233 (345)
T ss_dssp EEECSTTHHHHHHH
T ss_pred EEcCCCcHHHHHHH
Confidence 87665432333333
No 94
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=29.63 E-value=2.2e+02 Score=24.72 Aligned_cols=66 Identities=9% Similarity=-0.047 Sum_probs=41.9
Q ss_pred HHHHhCCC-CCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCC
Q psy2417 129 SGLLGLGV-NPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDD 195 (391)
Q Consensus 129 ~~L~~~gv-~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~ 195 (391)
..+.+.|. ++|+.|.. ...+-.-....+++.+.|...+.+-|...+..-...++..++++++++..
T Consensus 54 ~~a~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 54 EAAEKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGA 120 (308)
T ss_dssp HHHHHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 33444554 56665543 55555555666677788986655544444445556678899999999864
No 95
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=29.40 E-value=2e+02 Score=25.55 Aligned_cols=64 Identities=9% Similarity=0.061 Sum_probs=41.6
Q ss_pred HHhCC-CCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCC
Q psy2417 131 LLGLG-VNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDD 195 (391)
Q Consensus 131 L~~~g-v~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~ 195 (391)
+.+.| +++|+.|... ..+-.-....+++...|...+.+-|...+..-...++..++++++++..
T Consensus 69 a~~~g~~~~g~~vv~a-SsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 69 AIKDGRLKPGMEIIES-TSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGK 133 (343)
T ss_dssp HHHHTSSCTTCEEEEE-CSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEEE-CCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 33445 3666655444 3455555666677788986665555444555666788899999999863
No 96
>1zjc_A Aminopeptidase AMPS; metallopeptidase, hydrolase; 1.80A {Staphylococcus aureus subsp} SCOP: e.60.1.1
Probab=29.36 E-value=1.7e+02 Score=27.08 Aligned_cols=49 Identities=20% Similarity=0.062 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhC--CCCCCCeEEEEccC-CHHHHHHHH-HHHhcCCeEEE
Q psy2417 120 ALLRARNFGSGLLGL--GVNPGSFVGIYSQN-CPEWIITEQ-GAYCYSMIIVA 168 (391)
Q Consensus 120 l~~~~~~la~~L~~~--gv~~g~~V~i~~~~-s~e~i~~~l-A~~~~G~~~vp 168 (391)
+..+..++|..|.+. ++++|+.|.|..+- ..+++-++. ++.++|+..|.
T Consensus 7 ~~~~l~k~A~~lV~~~~~lq~Ge~VlI~~~~~~~~l~r~l~~~a~~~Ga~~v~ 59 (418)
T 1zjc_A 7 YKEKLQQYAELLVKVGMNVQPKQPVFIRSSVETLELTHLIVEEAYHCGASDVR 59 (418)
T ss_dssp HHHHHHHHHHHHHHTTTCCCTTCCEEEEEETTCHHHHHHHHHHHHHTTCCSEE
T ss_pred hHHHHHHHHHHHHHhCcCCCCCCEEEEEECCchHHHHHHHHHHHHHcCCceEE
Confidence 456777888888764 78999999999884 456665555 78889997775
No 97
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=28.07 E-value=1.8e+02 Score=25.94 Aligned_cols=86 Identities=15% Similarity=0.161 Sum_probs=49.0
Q ss_pred CCCCCCeEEEEccCCHH------HHHHHHHHH-hcCCeEEEccCC---------CCH---HHHHHHHHhcCccEEEEcCC
Q psy2417 135 GVNPGSFVGIYSQNCPE------WIITEQGAY-CYSMIIVALYDT---------LGP---DACAFIINQAEISVLIVDDD 195 (391)
Q Consensus 135 gv~~g~~V~i~~~~s~e------~i~~~lA~~-~~G~~~vpl~~~---------~~~---~~l~~il~~~~~~~vi~~~~ 195 (391)
-+++||+|+|++|.+.- -+-.-...+ ..|..++.-... .+. +++..++.+-.+++|+|...
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 88 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIG 88 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 46889999999998832 222222233 467776642221 112 35677778889999999765
Q ss_pred c-chhHHHhhcc-----cCccEEEEecCcch
Q psy2417 196 S-KCNQIIDRAP-----RCLKKIISIREVRM 220 (391)
Q Consensus 196 ~-~~~~~~~~~~-----~~l~~ii~~~~~~~ 220 (391)
- -..++++.+. +.-|.++-..+...
T Consensus 89 G~g~~rlL~~lD~~~i~~~PK~~~GySDiTa 119 (336)
T 3sr3_A 89 GMNSNSLLPYIDYDAFQNNPKIMIGYSDATA 119 (336)
T ss_dssp CSCGGGGGGGSCHHHHHHSCCEEEECGGGHH
T ss_pred cccHHHHhhhcChhHHhhCCeEEEEechHHH
Confidence 1 2333444331 13455555555443
No 98
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=27.91 E-value=3e+02 Score=24.12 Aligned_cols=78 Identities=12% Similarity=0.069 Sum_probs=50.0
Q ss_pred EEeHHHHHHHHHH---HHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEE
Q psy2417 114 WIHYNQALLRARN---FGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVL 190 (391)
Q Consensus 114 ~~Ty~el~~~~~~---la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v 190 (391)
.+++.+....... .-+.|...++++|++|.|....++-..++.+|- ..|+.++.++. +++++. .+++.++..+
T Consensus 139 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~--~~~~~~-~~~~lGa~~~ 214 (340)
T 3s2e_A 139 KVGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYAR-AMGLRVAAVDI--DDAKLN-LARRLGAEVA 214 (340)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHH-HTTCEEEEEES--CHHHHH-HHHHTTCSEE
T ss_pred CCCHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeC--CHHHHH-HHHHcCCCEE
Confidence 4667665422211 123455568999999999988666777666665 45887666654 344444 5677888887
Q ss_pred EEcCC
Q psy2417 191 IVDDD 195 (391)
Q Consensus 191 i~~~~ 195 (391)
+....
T Consensus 215 i~~~~ 219 (340)
T 3s2e_A 215 VNARD 219 (340)
T ss_dssp EETTT
T ss_pred EeCCC
Confidence 76554
No 99
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=27.43 E-value=2.9e+02 Score=24.29 Aligned_cols=64 Identities=8% Similarity=0.025 Sum_probs=44.0
Q ss_pred HHhCC-CCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCC
Q psy2417 131 LLGLG-VNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDD 195 (391)
Q Consensus 131 L~~~g-v~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~ 195 (391)
..+.| +++++.|.. ...+-.-....+++.+.|...+.+-|...+..-...++..++++++++..
T Consensus 64 a~~~g~l~~~~~vv~-aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 128 (325)
T 3dwg_A 64 AEADGLLRPGATILE-PTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAE 128 (325)
T ss_dssp HHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECST
T ss_pred HHHcCCCCCCCEEEE-eCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 44555 466666644 44566666667777888987666555555556667888999999999864
No 100
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=26.93 E-value=2.4e+02 Score=25.08 Aligned_cols=79 Identities=13% Similarity=0.023 Sum_probs=48.3
Q ss_pred EEeHHHHHHHH--HHHH-HHHHh-CCCCCCCeEEEEcc-CCHHHHHHHHHHHhcCCe-EEEccCCCCHHHHHHHHHhcCc
Q psy2417 114 WIHYNQALLRA--RNFG-SGLLG-LGVNPGSFVGIYSQ-NCPEWIITEQGAYCYSMI-IVALYDTLGPDACAFIINQAEI 187 (391)
Q Consensus 114 ~~Ty~el~~~~--~~la-~~L~~-~gv~~g~~V~i~~~-~s~e~i~~~lA~~~~G~~-~vpl~~~~~~~~l~~il~~~~~ 187 (391)
.+++.+..... -..| +.|.. .++++|++|.|... -.+-..++.+|- ..|+. ++..+..-..++....++..++
T Consensus 139 ~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lGa 217 (357)
T 1zsy_A 139 DIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAA-ALGLRTINVVRDRPDIQKLSDRLKSLGA 217 (357)
T ss_dssp SSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHH-HHTCEEEEEECCCSCHHHHHHHHHHTTC
T ss_pred CCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHH-HcCCEEEEEecCccchHHHHHHHHhcCC
Confidence 36777654321 1122 23434 47999999999998 445555656554 46874 4444554444555566778888
Q ss_pred cEEEEc
Q psy2417 188 SVLIVD 193 (391)
Q Consensus 188 ~~vi~~ 193 (391)
..++..
T Consensus 218 ~~vi~~ 223 (357)
T 1zsy_A 218 EHVITE 223 (357)
T ss_dssp SEEEEH
T ss_pred cEEEec
Confidence 887754
No 101
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=25.81 E-value=3e+02 Score=23.97 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=37.2
Q ss_pred CCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEcc--C----CCCHHHHHHHHHh----cCccEEEEcC
Q psy2417 136 VNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALY--D----TLGPDACAFIINQ----AEISVLIVDD 194 (391)
Q Consensus 136 v~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~--~----~~~~~~l~~il~~----~~~~~vi~~~ 194 (391)
+++|+.|.+..+....+..+ +...|+.++.++ . ....+.+...+++ .+++++++..
T Consensus 90 ~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~ 155 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYSSYVA---AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITY 155 (371)
T ss_dssp CCTTCEEEEETTCCHHHHHH---HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEES
T ss_pred hCCCCEEEEccCcchHHHHH---HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEEC
Confidence 46789888877666555433 667788776665 2 2367888888875 3566666544
No 102
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=24.99 E-value=1.1e+02 Score=26.64 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCCCCCeEEEEcc
Q psy2417 126 NFGSGLLGLGVNPGSFVGIYSQ 147 (391)
Q Consensus 126 ~la~~L~~~gv~~g~~V~i~~~ 147 (391)
.|...|+++||++|+.|.|.+.
T Consensus 17 ~L~~~L~~LGI~~Gd~llVHsS 38 (273)
T 2nyg_A 17 SITEDLKALGLKKGMTVLVHSS 38 (273)
T ss_dssp HHHHHHHHHTCCTTCEEEEEEC
T ss_pred HHHHHHHHcCCCCCCEEEEEec
Confidence 5788899999999999999885
No 103
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=24.98 E-value=1.7e+02 Score=26.12 Aligned_cols=59 Identities=17% Similarity=0.120 Sum_probs=34.6
Q ss_pred HHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEcc--CC---CCHHHHHHHHHhcCccEEEEc
Q psy2417 131 LLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALY--DT---LGPDACAFIINQAEISVLIVD 193 (391)
Q Consensus 131 L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~--~~---~~~~~l~~il~~~~~~~vi~~ 193 (391)
+...++++|+.|.+..+....+. -++...|+.++.++ +. ...+.+...++. ++++|++.
T Consensus 71 ~~~~~~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~ 134 (393)
T 1mdo_A 71 LMALGIGEGDEVITPSMTWVSTL---NMIVLLGANPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIPV 134 (393)
T ss_dssp HHHTTCCTTCEEEEESSSCHHHH---HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCB
T ss_pred HHHcCCCCCCEEEeCCCccHhHH---HHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCC-CceEEEEe
Confidence 33345678888877666555443 34456777655443 32 466777776653 56666654
No 104
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=24.75 E-value=2.2e+02 Score=26.29 Aligned_cols=14 Identities=29% Similarity=0.240 Sum_probs=6.9
Q ss_pred HHHhcCccEEEEcC
Q psy2417 181 IINQAEISVLIVDD 194 (391)
Q Consensus 181 il~~~~~~~vi~~~ 194 (391)
.+...+++++.++.
T Consensus 141 ~~~~~G~~~~~v~~ 154 (430)
T 3ri6_A 141 TLPSFGIEVRFVDV 154 (430)
T ss_dssp HHHHTTCEEEEECT
T ss_pred HHHHcCCEEEEeCC
Confidence 44445555555543
No 105
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=24.66 E-value=1.6e+02 Score=19.65 Aligned_cols=45 Identities=9% Similarity=-0.071 Sum_probs=31.0
Q ss_pred eEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcCC
Q psy2417 113 QWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSM 164 (391)
Q Consensus 113 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~ 164 (391)
..+.+.++.+. +.+++..+++.|.+++..+.....+...+...|.
T Consensus 22 ~~ip~~~l~~~-------~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~ 66 (85)
T 2jtq_A 22 INIPLKEVKER-------IATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGY 66 (85)
T ss_dssp EECCHHHHHHH-------HHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTC
T ss_pred EEcCHHHHHHH-------HHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCC
Confidence 45667666543 3344667788899998888777666666777775
No 106
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=24.66 E-value=2e+02 Score=26.12 Aligned_cols=86 Identities=13% Similarity=0.124 Sum_probs=49.1
Q ss_pred CCCCCCeEEEEccCCHH------HHHHHHHHH-hcCCeEEEccCCC---------CH---HHHHHHHHhcCccEEEEcCC
Q psy2417 135 GVNPGSFVGIYSQNCPE------WIITEQGAY-CYSMIIVALYDTL---------GP---DACAFIINQAEISVLIVDDD 195 (391)
Q Consensus 135 gv~~g~~V~i~~~~s~e------~i~~~lA~~-~~G~~~vpl~~~~---------~~---~~l~~il~~~~~~~vi~~~~ 195 (391)
-+++||+|+|++|.+.- -+-.-...+ ..|..++.-...+ +. +++..++.+-.+++|+|...
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~rG 118 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIG 118 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESCC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 47889999999998742 222222233 4677766433221 12 34666777788999999765
Q ss_pred c-chhHHHhhcc-----cCccEEEEecCcch
Q psy2417 196 S-KCNQIIDRAP-----RCLKKIISIREVRM 220 (391)
Q Consensus 196 ~-~~~~~~~~~~-----~~l~~ii~~~~~~~ 220 (391)
- -..++++.+. +.-|.++-..+...
T Consensus 119 Gyga~rlLp~LD~~~i~~~PK~fiGySDiTa 149 (371)
T 3tla_A 119 GDNSNSLLPFLDYDAIIANPKIIIGYSDTTA 149 (371)
T ss_dssp CSCGGGGGGGSCHHHHHHSCCEEEECGGGHH
T ss_pred cccHHHHHhhcChhhHHhCCcEEEEechHHH
Confidence 1 2334444332 13455555555443
No 107
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=24.14 E-value=3.8e+02 Score=23.77 Aligned_cols=55 Identities=5% Similarity=0.082 Sum_probs=38.0
Q ss_pred CCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhc---CccEEEEcC
Q psy2417 136 VNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQA---EISVLIVDD 194 (391)
Q Consensus 136 v~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~---~~~~vi~~~ 194 (391)
.++|+.|.+..+....+. .++...|+.+++++. ...+.+...++.. ++++|++..
T Consensus 124 ~~~gd~V~~~~p~~~~~~---~~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v~~~~ 181 (398)
T 3a2b_A 124 MGRNDYILLDERDHASII---DGSRLSFSKVIKYGH-NNMEDLRAKLSRLPEDSAKLICTDG 181 (398)
T ss_dssp SCTTCEEEEETTCCHHHH---HHHHHSSSEEEEECT-TCHHHHHHHHHTSCSSSCEEEEEES
T ss_pred hCCCCEEEECCccCHHHH---HHHHHcCCceEEeCC-CCHHHHHHHHHhhccCCceEEEEeC
Confidence 467888887776655443 345667887777765 5678888888765 567777654
No 108
>3acd_A Hypoxanthine-guanine phosphoribosyltransferase; rossmann fold, structural genomics, NPPSFA; HET: IMP; 1.89A {Thermus thermophilus} PDB: 3acc_A* 3acb_A*
Probab=24.00 E-value=1.1e+02 Score=24.61 Aligned_cols=45 Identities=11% Similarity=-0.084 Sum_probs=32.8
Q ss_pred eEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHH
Q psy2417 113 QWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQG 158 (391)
Q Consensus 113 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA 158 (391)
.-+|..|+.+++.++|+.+.+..-+ .+.|.|+..++--++++.|+
T Consensus 12 vlis~~~I~~~i~rlA~eI~e~~~~-~~~vlvgIl~Gg~~fa~~L~ 56 (181)
T 3acd_A 12 VQISAEAIKKRVEELGGEIARDYQG-KTPHLICVLNGAFIFMADLV 56 (181)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHTTT-CCCEEEEEETTTHHHHHHHH
T ss_pred EEeCHHHHHHHHHHHHHHHHHHhCC-CCcEEEEEecCcHHHHHHHH
Confidence 5689999999999999999875322 44566666666655555554
No 109
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=23.88 E-value=3.8e+02 Score=23.72 Aligned_cols=53 Identities=13% Similarity=0.021 Sum_probs=30.2
Q ss_pred CCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEccC----------CCCHHHHHHHHHhcCccEEEE
Q psy2417 136 VNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYD----------TLGPDACAFIINQAEISVLIV 192 (391)
Q Consensus 136 v~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~----------~~~~~~l~~il~~~~~~~vi~ 192 (391)
+++|+.|.+..+....+. -++...|+.+++++. ....+.+...++. +.++|+.
T Consensus 123 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~ 185 (407)
T 3nra_A 123 VARGDKVAIVQPDYFANR---KLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA-GARVFLF 185 (407)
T ss_dssp CCTTCEEEEEESCCTHHH---HHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT-TCCEEEE
T ss_pred CCCCCEEEEcCCcccchH---HHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhh-CCcEEEE
Confidence 456777777666554433 344556665544432 1356777777765 5555544
No 110
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=23.87 E-value=3.1e+02 Score=29.54 Aligned_cols=93 Identities=9% Similarity=0.029 Sum_probs=65.7
Q ss_pred CCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCC
Q psy2417 254 KPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG 333 (391)
Q Consensus 254 ~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~ 333 (391)
.|+.+|.+. + +-.+|++.+...+..+...+......+++++..+++-+..+- ...++++..|+..+..+.
T Consensus 477 ~p~~~Av~~---~------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~v-v~~lailkaG~~~vpldp 546 (1304)
T 2vsq_A 477 NPDAPALTY---S------GQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELV-IGILGVLKAGAAYLPVDP 546 (1304)
T ss_dssp CTTSEEEES---S------SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEE---C------CeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHH-HHHHHHHHHCCEEEEECC
Confidence 466676642 1 236899998877666555442222789999999988664322 233789999999888765
Q ss_pred --CHHhHHHHHHhcCCcEEecChHH
Q psy2417 334 --DIKNLTEDMKTLKPTIMPAVPRL 356 (391)
Q Consensus 334 --~~~~l~~~i~~~~~t~~~~~P~~ 356 (391)
..+.+...++..++.++...+..
T Consensus 547 ~~p~~rl~~il~~~~~~~vl~~~~~ 571 (1304)
T 2vsq_A 547 KLPEDRISYMLADSAAACLLTHQEM 571 (1304)
T ss_dssp TSCHHHHHHHHHHHTCCEEEECSTT
T ss_pred CCHHHHHHHHHHHcCCCEEEECcch
Confidence 56788889999999988876543
No 111
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=23.84 E-value=2.1e+02 Score=25.42 Aligned_cols=86 Identities=6% Similarity=0.011 Sum_probs=48.9
Q ss_pred CCCCCCeEEEEccCCHH------HHHHHHHHH-hcCCeEEEccCCC---------CH---HHHHHHHHhcCccEEEEcCC
Q psy2417 135 GVNPGSFVGIYSQNCPE------WIITEQGAY-CYSMIIVALYDTL---------GP---DACAFIINQAEISVLIVDDD 195 (391)
Q Consensus 135 gv~~g~~V~i~~~~s~e------~i~~~lA~~-~~G~~~vpl~~~~---------~~---~~l~~il~~~~~~~vi~~~~ 195 (391)
-+++||+|+|++|.+.- -+-.-...+ ..|..++.-...+ +. +++..++.+-.++.|+|...
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLG 87 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 36889999999997642 222223333 4677766433211 12 34667778889999999765
Q ss_pred -cchhHHHhhcc-----cCccEEEEecCcch
Q psy2417 196 -SKCNQIIDRAP-----RCLKKIISIREVRM 220 (391)
Q Consensus 196 -~~~~~~~~~~~-----~~l~~ii~~~~~~~ 220 (391)
.-..++++.+. +.-|.++-..+...
T Consensus 88 G~g~~rlL~~lD~~~i~~~PK~~~GySDiTa 118 (331)
T 4e5s_A 88 GYNSNGLLKYLDYDLIRENPKFFCGYSDITA 118 (331)
T ss_dssp CSCGGGGGGGCCHHHHHTSCCEEEECGGGHH
T ss_pred cccHHHHHhhcChhHHHhCCeEEEEecchHH
Confidence 12333443332 13455555555443
No 112
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=23.42 E-value=1.3e+02 Score=22.92 Aligned_cols=51 Identities=16% Similarity=0.100 Sum_probs=31.9
Q ss_pred CCeEEEEccCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEE
Q psy2417 139 GSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVL 190 (391)
Q Consensus 139 g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v 190 (391)
-|.|.++.|. ....-.+..|...|.-.+.+++....+++...+++.+.+++
T Consensus 71 ~Dlvii~vp~-~~v~~v~~~~~~~g~~~i~i~~~~~~~~l~~~a~~~Gi~~i 121 (145)
T 2duw_A 71 VDMVDVFRNS-EAAWGVAQEAIAIGAKTLWLQLGVINEQAAVLAREAGLSVV 121 (145)
T ss_dssp CSEEECCSCS-THHHHHHHHHHHHTCCEEECCTTCCCHHHHHHHHTTTCEEE
T ss_pred CCEEEEEeCH-HHHHHHHHHHHHcCCCEEEEcCChHHHHHHHHHHHcCCEEE
Confidence 3667677663 33333344566667666666666667777777777777654
No 113
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=22.67 E-value=1.9e+02 Score=25.79 Aligned_cols=52 Identities=10% Similarity=0.025 Sum_probs=37.9
Q ss_pred EEccCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCC
Q psy2417 144 IYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDD 195 (391)
Q Consensus 144 i~~~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~ 195 (391)
+....+-.-....+++.+.|...+.+-|...+..-...++..++++++++..
T Consensus 80 v~~SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~~ 131 (346)
T 3l6b_A 80 VTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPS 131 (346)
T ss_dssp EEECSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECSS
T ss_pred EEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 3334566666677788889987666555555566677889999999999875
No 114
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=22.64 E-value=1.5e+02 Score=22.61 Aligned_cols=49 Identities=8% Similarity=-0.032 Sum_probs=29.5
Q ss_pred CeEEEEccCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccE
Q psy2417 140 SFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISV 189 (391)
Q Consensus 140 ~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~ 189 (391)
|.|.|+.+. ....-++-.|...|...+.+.+....+++....++.+.++
T Consensus 79 Dlvvi~vp~-~~~~~vv~~~~~~gi~~i~~~~g~~~~~l~~~a~~~Gi~v 127 (144)
T 2d59_A 79 EVVDLFVKP-KLTMEYVEQAIKKGAKVVWFQYNTYNREASKKADEAGLII 127 (144)
T ss_dssp SEEEECSCH-HHHHHHHHHHHHHTCSEEEECTTCCCHHHHHHHHHTTCEE
T ss_pred CEEEEEeCH-HHHHHHHHHHHHcCCCEEEECCCchHHHHHHHHHHcCCEE
Confidence 455555544 3333333456666665566666666777777777777763
No 115
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=22.57 E-value=3.1e+02 Score=24.44 Aligned_cols=58 Identities=12% Similarity=0.031 Sum_probs=34.7
Q ss_pred CCCCCeEEEEccCCHHHHHHHHHHHhcCCeEE--EccCC--CCHHHHHHHHHhcCccEEEEcC
Q psy2417 136 VNPGSFVGIYSQNCPEWIITEQGAYCYSMIIV--ALYDT--LGPDACAFIINQAEISVLIVDD 194 (391)
Q Consensus 136 v~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~v--pl~~~--~~~~~l~~il~~~~~~~vi~~~ 194 (391)
+++|+.|.+..+...... ..-++...|+.++ ++++. ...+.+...+++.+.++|+...
T Consensus 83 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~ 144 (416)
T 3isl_A 83 IEPEDDVLIPIYGRFGYL-LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVH 144 (416)
T ss_dssp CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEES
T ss_pred cCCCCEEEEecCCcccHH-HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEc
Confidence 578888877765433211 2234556676554 44432 3678888888765667666654
No 116
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=22.16 E-value=2.7e+02 Score=21.96 Aligned_cols=91 Identities=9% Similarity=0.004 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHH---HhcCccEEEEcCCcch
Q psy2417 122 LRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFII---NQAEISVLIVDDDSKC 198 (391)
Q Consensus 122 ~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il---~~~~~~~vi~~~~~~~ 198 (391)
.+...|...|...+ ++..+.|+++.....-...-.+...|..+..++...+.++-..++ +..+.+++++....
T Consensus 31 ~K~~~L~~ll~~~~--~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~-- 106 (185)
T 2jgn_A 31 DKRSFLLDLLNATG--KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA-- 106 (185)
T ss_dssp GHHHHHHHHHHHC---CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC----
T ss_pred HHHHHHHHHHHhcC--CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChh--
Confidence 34555666666643 566788888765443333334445688888888888776544444 45677888877531
Q ss_pred hHHHhhcccCccEEEEecCc
Q psy2417 199 NQIIDRAPRCLKKIISIREV 218 (391)
Q Consensus 199 ~~~~~~~~~~l~~ii~~~~~ 218 (391)
..=+ ..+ .+..+|.++.+
T Consensus 107 ~~Gl-di~-~~~~VI~~d~p 124 (185)
T 2jgn_A 107 ARGL-DIS-NVKHVINFDLP 124 (185)
T ss_dssp -----CCC-SBSEEEESSCC
T ss_pred hcCC-Ccc-cCCEEEEeCCC
Confidence 1111 112 45566666654
No 117
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=21.89 E-value=3.2e+02 Score=24.22 Aligned_cols=25 Identities=4% Similarity=0.025 Sum_probs=16.3
Q ss_pred CCCCcEEEeeh-hHHHHHHHHHHHhh
Q psy2417 268 TGNPKGVMLTH-GNVIAAISAALLQL 292 (391)
Q Consensus 268 TG~PKgV~~th-~~l~~~~~~~~~~~ 292 (391)
.|.+-|.++.. ..++..+......+
T Consensus 243 ~G~r~G~~~~~~~~~~~~l~~~~~~~ 268 (399)
T 1c7n_A 243 AGMGMSNIIIKNPDIRERFTKSRDAT 268 (399)
T ss_dssp GGGCCEEEECCCHHHHHHHHHHHHHT
T ss_pred cchheEEEEECCHHHHHHHHHHHhhc
Confidence 56677888875 56777665554443
No 118
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=21.87 E-value=2.9e+02 Score=24.56 Aligned_cols=54 Identities=4% Similarity=0.018 Sum_probs=35.1
Q ss_pred CCCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEE--ccCC---CCHHHHHHHHHhcCccEEEE
Q psy2417 135 GVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVA--LYDT---LGPDACAFIINQAEISVLIV 192 (391)
Q Consensus 135 gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vp--l~~~---~~~~~l~~il~~~~~~~vi~ 192 (391)
++++|+.|.+..+....+.. ++...|+.++. +++. ...+.+...++. +.++|++
T Consensus 76 ~~~~g~~Vi~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~ 134 (390)
T 3b8x_A 76 RLKKGDEIIVPAVSWSTTYY---PLQQYGLRVKFVDIDINTLNIDIESLKEAVTD-STKAILT 134 (390)
T ss_dssp SCCTTCEEEEESSSCHHHHH---HHHHTTCEEEEECBCTTTCSBCHHHHHHHCCT-TEEEEEE
T ss_pred CCCCcCEEEECCCCcHHHHH---HHHHcCCEEEEEecCccccCcCHHHHHHHhCc-CCeEEEE
Confidence 68889998887766555443 45567876554 4432 367788777754 5666665
No 119
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=21.49 E-value=3.4e+02 Score=23.97 Aligned_cols=57 Identities=12% Similarity=0.006 Sum_probs=36.3
Q ss_pred CCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEc--cC--CCCHHHHHHHHHhcCccEEEEc
Q psy2417 136 VNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVAL--YD--TLGPDACAFIINQAEISVLIVD 193 (391)
Q Consensus 136 v~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl--~~--~~~~~~l~~il~~~~~~~vi~~ 193 (391)
+++|+.|.+..+....+. ..-++...|+.++.+ ++ ....+.+...++..+.++|+..
T Consensus 90 ~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~ 150 (396)
T 2ch1_A 90 LEEGDRVLIAVNGIWAER-AVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLT 150 (396)
T ss_dssp CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEE
T ss_pred cCCCCeEEEEcCCcccHH-HHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCEEEEE
Confidence 467898887776655542 222456677765544 33 3577888888876566777664
No 120
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=21.40 E-value=3.3e+02 Score=24.39 Aligned_cols=57 Identities=5% Similarity=-0.029 Sum_probs=34.5
Q ss_pred CCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEcc--CC--CCHHHHHHHHHhcCccEEEEcC
Q psy2417 137 NPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALY--DT--LGPDACAFIINQAEISVLIVDD 194 (391)
Q Consensus 137 ~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~--~~--~~~~~l~~il~~~~~~~vi~~~ 194 (391)
++|+.|.+..+..+.+..++..+...|+.++.++ ++ ...+.+...++. +.++|+...
T Consensus 111 ~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~ 171 (423)
T 3lvm_A 111 KKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRD-DTILVSIMH 171 (423)
T ss_dssp TTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCT-TEEEEECCS
T ss_pred cCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcCC-CcEEEEEeC
Confidence 4688887777666666555544456676555443 32 256777777654 556666543
No 121
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=21.30 E-value=67 Score=28.03 Aligned_cols=84 Identities=13% Similarity=-0.015 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHH
Q psy2417 122 LRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQI 201 (391)
Q Consensus 122 ~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~ 201 (391)
-|+-.||..|+ + |.+.+.+....++ -+.|..+..++. -..+++...+++.+++++|+|.-..-...
T Consensus 19 mRcl~LA~~l~-------~-v~F~~~~~~~~~~-----~~~g~~v~~l~~-~d~~~~~~~l~~~~~d~lIvD~Y~~~~~~ 84 (282)
T 3hbm_A 19 KRDLVLAKQYS-------D-VSFACLPLEGSLI-----DEIPYPVYELSS-ESIYELINLIKEEKFELLIIDHYGISVDD 84 (282)
T ss_dssp HHHHHHHTTCS-------S-EEEEECCCTTCCG-----GGCCSCEEECSS-SCHHHHHHHHHHHTCSEEEEECTTCCHHH
T ss_pred HHHHHHHHHHH-------h-CEEEEecCcHhHH-----HHCCCeEEEcCc-cCHHHHHHHHHhCCCCEEEEECCCCCHHH
Confidence 35666777665 2 5555544332221 234777777764 35677888888899999999987544444
Q ss_pred HhhcccC-ccEEEEecCcc
Q psy2417 202 IDRAPRC-LKKIISIREVR 219 (391)
Q Consensus 202 ~~~~~~~-l~~ii~~~~~~ 219 (391)
...++.. ..+++++|+..
T Consensus 85 ~~~lk~~~~~~i~~iDD~~ 103 (282)
T 3hbm_A 85 EKLIKLETGVKILSFDDEI 103 (282)
T ss_dssp HHHHHHHHCCEEEEECSSC
T ss_pred HHHHHHhcCcEEEEEecCC
Confidence 4444321 34677777753
No 122
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=21.30 E-value=4.1e+02 Score=23.16 Aligned_cols=72 Identities=6% Similarity=-0.079 Sum_probs=44.8
Q ss_pred HHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcCC-eEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhh
Q psy2417 129 SGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSM-IIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDR 204 (391)
Q Consensus 129 ~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~-~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~ 204 (391)
..+...++++|++|.|...-+.-..++.+|- ..|+ +++.++. ++++ ..++++.++..++...+....+....
T Consensus 151 ~~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak-~~G~~~vi~~~~--~~~k-~~~a~~lGa~~~i~~~~~~~~~~~~~ 223 (346)
T 4a2c_A 151 HAFHLAQGCENKNVIIIGAGTIGLLAIQCAV-ALGAKSVTAIDI--SSEK-LALAKSFGAMQTFNSSEMSAPQMQSV 223 (346)
T ss_dssp HHHHHTTCCTTSEEEEECCSHHHHHHHHHHH-HTTCSEEEEEES--CHHH-HHHHHHTTCSEEEETTTSCHHHHHHH
T ss_pred HHHHHhccCCCCEEEEECCCCcchHHHHHHH-HcCCcEEEEEec--hHHH-HHHHHHcCCeEEEeCCCCCHHHHHHh
Confidence 3445568899999999987555555555554 4554 4455544 3344 45667889988887665434444333
No 123
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=21.19 E-value=3.1e+02 Score=23.60 Aligned_cols=62 Identities=6% Similarity=-0.040 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHH
Q psy2417 87 DAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEW 152 (391)
Q Consensus 87 ~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~ 152 (391)
.+++...+.-|+...+...|...-+|...++.++.+++.+.+..|.+.|+. ..+.+-|+...
T Consensus 38 tv~~~i~~~lP~e~~iy~~D~a~~PYG~ks~e~i~~~~~~~~~~L~~~g~d----~IVIACNTa~~ 99 (274)
T 3uhf_A 38 SVLKSLYEARLFDEIIYYGDTARVPYGVKDKDTIIKFCLEALDFFEQFQID----MLIIACNTASA 99 (274)
T ss_dssp HHHHHHHHTTCCSEEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHTTSCCS----EEEECCHHHHH
T ss_pred HHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC----EEEEeCCChhH
Confidence 445566667788888888776556778899999999999999999887654 44445555543
No 124
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=21.13 E-value=1.9e+02 Score=21.87 Aligned_cols=51 Identities=4% Similarity=-0.112 Sum_probs=34.2
Q ss_pred CCeEEEEccCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEE
Q psy2417 139 GSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVL 190 (391)
Q Consensus 139 g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v 190 (391)
-|.|.++.| .....-.+..|...|.-.+.+++..-.+++....++.+.+++
T Consensus 70 vDlvii~vp-~~~v~~v~~~~~~~g~~~i~~~~~~~~~~l~~~a~~~Gi~~i 120 (138)
T 1y81_A 70 VDVIVFVVP-PKVGLQVAKEAVEAGFKKLWFQPGAESEEIRRFLEKAGVEYS 120 (138)
T ss_dssp CCEEEECSC-HHHHHHHHHHHHHTTCCEEEECTTSCCHHHHHHHHHHTCEEE
T ss_pred CCEEEEEeC-HHHHHHHHHHHHHcCCCEEEEcCccHHHHHHHHHHHCCCEEE
Confidence 467777777 344444444677777766667776667888888888887743
No 125
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=20.92 E-value=4.1e+02 Score=23.03 Aligned_cols=65 Identities=8% Similarity=-0.079 Sum_probs=42.9
Q ss_pred HHHhCCC-CCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCC
Q psy2417 130 GLLGLGV-NPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDD 195 (391)
Q Consensus 130 ~L~~~gv-~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~ 195 (391)
.+.+.|. ++|+.|.. ...+-.-....+++.+.|...+.+-|...+..-...++..++++++++..
T Consensus 52 ~a~~~g~~~~~~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 117 (316)
T 1y7l_A 52 QAEKDGTLTKGKEIVD-ATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGA 117 (316)
T ss_dssp HHHHTTSSCTTCEEEE-SCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCEEEE-eCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 3445554 56655544 44566666666777889986665555444555666788899999999864
No 126
>3ohp_A Hypoxanthine phosphoribosyltransferase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Vibrio cholerae} SCOP: c.61.1.1 PDB: 1g9s_A* 1g9t_A* 1grv_A 1j7j_A
Probab=20.78 E-value=1.9e+02 Score=22.98 Aligned_cols=47 Identities=11% Similarity=0.033 Sum_probs=30.1
Q ss_pred eEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHH
Q psy2417 113 QWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGA 159 (391)
Q Consensus 113 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~ 159 (391)
.-+||.++.+++.++|..+.+..-.....+.+...++--.....++-
T Consensus 7 ~l~s~~~i~~~i~~La~~I~~~~~~~~~~vvVgi~~gG~~~a~~la~ 53 (177)
T 3ohp_A 7 VMISEQEVAQRIRELGQQITEHYQGSSDLVLVGLLRGSFVFMADLAR 53 (177)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHTTTCSCEEEEEETTTTHHHHHHHHH
T ss_pred EeeCHHHHHHHHHHHHHHHHHHcCCCCCeEEEEECcchHHHHHHHHH
Confidence 56899999999999999998753222213444445554444444443
No 127
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Probab=20.76 E-value=2.8e+02 Score=24.60 Aligned_cols=79 Identities=10% Similarity=0.061 Sum_probs=47.0
Q ss_pred EEeHHHHHHHH--HHHH-HHHHh-CCCCCC-CeEEEEcc-CCHHHHHHHHHHHhcCCeEEEccCCCCH-HHHHHHHHhcC
Q psy2417 114 WIHYNQALLRA--RNFG-SGLLG-LGVNPG-SFVGIYSQ-NCPEWIITEQGAYCYSMIIVALYDTLGP-DACAFIINQAE 186 (391)
Q Consensus 114 ~~Ty~el~~~~--~~la-~~L~~-~gv~~g-~~V~i~~~-~s~e~i~~~lA~~~~G~~~vpl~~~~~~-~~l~~il~~~~ 186 (391)
.+++.+..... -..| +.|.. .++++| ++|.|... -.+-..++.+|- ..|+..+.+..+... ++....++..+
T Consensus 138 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lG 216 (364)
T 1gu7_A 138 GLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGK-LLNFNSISVIRDRPNLDEVVASLKELG 216 (364)
T ss_dssp CCCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHH-HHTCEEEEEECCCTTHHHHHHHHHHHT
T ss_pred CCCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHH-HCCCEEEEEecCccccHHHHHHHHhcC
Confidence 47777644322 1122 33444 379999 99999988 555666666655 468765555433322 33444557788
Q ss_pred ccEEEEc
Q psy2417 187 ISVLIVD 193 (391)
Q Consensus 187 ~~~vi~~ 193 (391)
+..++..
T Consensus 217 a~~vi~~ 223 (364)
T 1gu7_A 217 ATQVITE 223 (364)
T ss_dssp CSEEEEH
T ss_pred CeEEEec
Confidence 8877754
No 128
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=20.75 E-value=2.9e+02 Score=24.40 Aligned_cols=58 Identities=21% Similarity=0.154 Sum_probs=33.5
Q ss_pred CCCCCeEEEEccCCHHHHHHHHHHHhcCCeE--EEccCC--CCHHHHHHHHHh-cCccEEEEcC
Q psy2417 136 VNPGSFVGIYSQNCPEWIITEQGAYCYSMII--VALYDT--LGPDACAFIINQ-AEISVLIVDD 194 (391)
Q Consensus 136 v~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~--vpl~~~--~~~~~l~~il~~-~~~~~vi~~~ 194 (391)
+++|+.|.+..+..+-.. ..-.+...|+.+ +++++. ...+.+...+++ .++++|+...
T Consensus 80 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~ 142 (392)
T 2z9v_A 80 ISPDDVVLNLASGVYGKG-FGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCH 142 (392)
T ss_dssp CCTTCCEEEEESSHHHHH-HHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEES
T ss_pred cCCCCEEEEecCCcccHH-HHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEec
Confidence 467888877665443332 111223356554 455443 578888888865 3667776654
No 129
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=20.71 E-value=4.2e+02 Score=23.03 Aligned_cols=61 Identities=13% Similarity=0.093 Sum_probs=41.7
Q ss_pred HhCCCCCCCeEEEEccCC-HHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCC
Q psy2417 132 LGLGVNPGSFVGIYSQNC-PEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDD 195 (391)
Q Consensus 132 ~~~gv~~g~~V~i~~~~s-~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~ 195 (391)
...++++|++|.|....+ +-..++.+| ...|+.++.++. +++++..+.++.++..++....
T Consensus 143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~--~~~~~~~~~~~~g~~~~~~~~~ 204 (336)
T 4b7c_A 143 DVGQPKNGETVVISGAAGAVGSVAGQIA-RLKGCRVVGIAG--GAEKCRFLVEELGFDGAIDYKN 204 (336)
T ss_dssp HTTCCCTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEES--SHHHHHHHHHTTCCSEEEETTT
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeC--CHHHHHHHHHHcCCCEEEECCC
Confidence 345899999999999855 555555444 467886666543 4566666657888887776443
No 130
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=20.37 E-value=1.8e+02 Score=24.61 Aligned_cols=61 Identities=7% Similarity=-0.067 Sum_probs=44.0
Q ss_pred HHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHH
Q psy2417 87 DAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPE 151 (391)
Q Consensus 87 ~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e 151 (391)
.++++..+..|+...+...|...-++...++.++.++..+.+..|.+.|+. .|.+.| |+..
T Consensus 14 tv~~~l~~~lP~~~~iy~~D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~d---~iviaC-NTa~ 74 (255)
T 2jfz_A 14 SVLKSLLKARLFDEIIYYGDSARVPYGTKDPTTIKQFGLEALDFFKPHEIE---LLIVAC-NTAS 74 (255)
T ss_dssp HHHHHHHHTTCCSEEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHGGGCCS---CEEECC-HHHH
T ss_pred HHHHHHHHHCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC---EEEEeC-chhh
Confidence 445555677898888877775445666779999999999999999988753 454444 4443
No 131
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=20.35 E-value=2.3e+02 Score=25.16 Aligned_cols=78 Identities=12% Similarity=0.036 Sum_probs=46.7
Q ss_pred EEeHHHHHHHHHH---HHHHHHhCCCC-CCCeEEEEccCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccE
Q psy2417 114 WIHYNQALLRARN---FGSGLLGLGVN-PGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISV 189 (391)
Q Consensus 114 ~~Ty~el~~~~~~---la~~L~~~gv~-~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~ 189 (391)
.+++.+....... .-+.|...+++ +|++|.|...-.+-..++.+|-. .|+.++.++.+ ++++..+.++.++..
T Consensus 152 ~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~-~Ga~Vi~~~~~--~~~~~~~~~~lGa~~ 228 (357)
T 2cf5_A 152 GMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAKA-MGHHVTVISSS--NKKREEALQDLGADD 228 (357)
T ss_dssp SCCHHHHTGGGTHHHHHHHHHHHTSTTSTTCEEEEECCSHHHHHHHHHHHH-HTCEEEEEESS--TTHHHHHHTTSCCSC
T ss_pred CCCHHHhhhhhhhHHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeCC--hHHHHHHHHHcCCce
Confidence 4677664321111 11335566888 99999999875566666666554 57765555543 345555555777776
Q ss_pred EEEcC
Q psy2417 190 LIVDD 194 (391)
Q Consensus 190 vi~~~ 194 (391)
++...
T Consensus 229 vi~~~ 233 (357)
T 2cf5_A 229 YVIGS 233 (357)
T ss_dssp EEETT
T ss_pred eeccc
Confidence 66544
No 132
>3oon_A Outer membrane protein (TPN50); protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; 1.79A {Borrelia burgdorferi}
Probab=20.18 E-value=2.6e+02 Score=20.37 Aligned_cols=60 Identities=15% Similarity=-0.007 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy2417 85 LYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGI 144 (391)
Q Consensus 85 l~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 144 (391)
..+.+....+.+|+....+...........+.+.==.+|++.++.+|.+.|+.+.+++.+
T Consensus 35 ~L~~~a~~l~~~~~~~i~I~GhtD~~g~~~~N~~LS~~RA~aV~~~L~~~Gv~~~~ri~~ 94 (123)
T 3oon_A 35 KIDLIAKLLEKFKKNNILIEGHTEQFGLEEEMHELSEKRARAIGNYLIKMKVKDKDQILF 94 (123)
T ss_dssp HHHHHHHHHHHSCSCCEEEEECCCSCCCHHHHHHHHHHHHHHHHHHHHHTTSSCGGGEEE
T ss_pred HHHHHHHHHHHCCCceEEEEEEeCCCCChHHHHHHHHHHHHHHHHHHHHcCCCchHeEEE
Confidence 445566667778874443333221122233444445689999999999999984444444
No 133
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=20.10 E-value=4e+02 Score=22.57 Aligned_cols=61 Identities=11% Similarity=0.117 Sum_probs=44.0
Q ss_pred HHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHH
Q psy2417 87 DAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPE 151 (391)
Q Consensus 87 ~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e 151 (391)
.++++..+..|+...+...|...-++...++.++.+++.+.+..|.+.|+. .| +++-|+..
T Consensus 17 tv~~~i~~~lP~~~~iy~~D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~d---~i-viaCNTas 77 (267)
T 2gzm_A 17 TVAKELIRQLPKERIIYLGDTARCPYGPRSREEVRQFTWEMTEHLLDLNIK---ML-VIACNTAT 77 (267)
T ss_dssp HHHHHHHHHCTTSCEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHHTTTCS---EE-EECCHHHH
T ss_pred HHHHHHHHHCCCCCEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC---EE-EEeCchhh
Confidence 456666677898887777765344566678999999999999999987653 34 44445554
No 134
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=20.06 E-value=3.7e+02 Score=23.58 Aligned_cols=74 Identities=8% Similarity=-0.130 Sum_probs=45.4
Q ss_pred EEeHHHHHHHHHHH---HHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEE
Q psy2417 114 WIHYNQALLRARNF---GSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVL 190 (391)
Q Consensus 114 ~~Ty~el~~~~~~l---a~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v 190 (391)
.+++.+........ -+.|...++++|++|.|...-.+-..++.+|- ..|+.++.++.+- +++. .+++.++..+
T Consensus 149 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~~--~~~~-~~~~lGa~~v 224 (348)
T 3two_A 149 NAPLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAV-AMGAEVSVFARNE--HKKQ-DALSMGVKHF 224 (348)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHH-HTTCEEEEECSSS--TTHH-HHHHTTCSEE
T ss_pred CCCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCCH--HHHH-HHHhcCCCee
Confidence 36666654222111 23455668999999999987555666666554 5688766665433 3333 4456788877
Q ss_pred E
Q psy2417 191 I 191 (391)
Q Consensus 191 i 191 (391)
+
T Consensus 225 ~ 225 (348)
T 3two_A 225 Y 225 (348)
T ss_dssp E
T ss_pred c
Confidence 7
Done!