RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2417
(391 letters)
>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA
synthetase (LC-FACS). The members of this family are
eukaryotic fatty acid CoA synthetases that activate
fatty acids with chain lengths of 12 to 20. LC-FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
This is a required step before free fatty acids can
participate in most catabolic and anabolic reactions.
Organisms tend to have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells.
Length = 539
Score = 358 bits (920), Expect = e-120
Identities = 116/282 (41%), Positives = 165/282 (58%), Gaps = 38/282 (13%)
Query: 111 PYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALY 170
PY+WI Y + RA N GSGL LG+ PG +GI+++N PEWIITEQ + S++IV LY
Sbjct: 2 PYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPLY 61
Query: 171 DTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRA 230
DTLG +A +I+N+ EIS++ D A
Sbjct: 62 DTLGEEAIEYILNETEISIVFCD------------------------------------A 85
Query: 231 IEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALL 290
+++ F+E+E +G + PPKP DL TI YTSGTTGNPKGVMLTHGN++A ++
Sbjct: 86 VKVYSFEELEELGKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAGINK 145
Query: 291 QLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIM 350
+ + +DV IS+LPLAH+ ER E+ +GG IGYYSGD + L D+K LKPT+
Sbjct: 146 IVPEFIGP-TDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDTRGLKGDIKELKPTVF 204
Query: 351 PAVPRLLNRMYDKVMAQI-RPSFIKRLMFNMAMGSKENEIKK 391
VPR+L+R+Y ++A++ +KR +FN A K +++
Sbjct: 205 VGVPRVLDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRR 246
>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase.
Length = 651
Score = 266 bits (682), Expect = 3e-83
Identities = 117/325 (36%), Positives = 177/325 (54%), Gaps = 22/325 (6%)
Query: 79 YDDVKTLYDAFRKGAKESNNGRCLGWR---QNISRPYQWIHYNQALLRARNFGSGLLGLG 135
+ ++ TL+D F + + + LG R Y+W+ Y +A GSGL+ G
Sbjct: 40 HPEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHG 99
Query: 136 VNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDD 195
+ G+ VG+Y N PEW+I + YS + V LYDTLGPDA FI+N AE++ +
Sbjct: 100 IPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQ 159
Query: 196 SKCNQIIDRAPRCLKKIISIR--------EVRMATMQRARSRAIEIIRFDEIERVGAQKM 247
N ++ CL +I S+R + + ++ +EI+ + ++ G
Sbjct: 160 -TLNTLLS----CLSEIPSVRLIVVVGGADEPLPSL--PSGTGVEIVTYSKLLAQGRSSP 212
Query: 248 FEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFL 307
PPKP D+ TICYTSGTTG PKGV+LTHGN+IA ++ + L P SDV IS+L
Sbjct: 213 QPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLST-KFYP--SDVHISYL 269
Query: 308 PLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQ 367
PLAH+ ER + M G ++G+Y GD L +D+ L+PTI +VPRL NR+YD +
Sbjct: 270 PLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNA 329
Query: 368 IRPS-FIKRLMFNMAMGSKENEIKK 391
++ S +K +FN A +K+ ++
Sbjct: 330 VKESGGLKERLFNAAYNAKKQALEN 354
>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 240 bits (613), Expect = 4e-73
Identities = 117/312 (37%), Positives = 172/312 (55%), Gaps = 18/312 (5%)
Query: 81 DVKTLYDAFRKGAKESNNGRCLGWRQNISR---PYQWIHYNQALLRARNFGSGLLGLGVN 137
D+ T +D F K ++ + + LGWR+ + PY W Y + GS L G
Sbjct: 40 DITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAE 99
Query: 138 PGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSK 197
PGS VGIY NCP+WI+ + +S+I V LYDTLGP A +I++ AEI + V D K
Sbjct: 100 PGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFV-QDKK 158
Query: 198 CNQIIDRAPRC-----LKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVP 252
++++ P C LK I+S V +A ++ + + +G + E P
Sbjct: 159 IKELLE--PDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNP 216
Query: 253 PKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYS--DVLISFLPLA 310
PKP D+CTI YTSGT+G+PKGV+LTH V + L + K + DV +SFLPLA
Sbjct: 217 PKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLA 276
Query: 311 HMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYD---KVMAQ 367
H+L+R E F G S+GYY GD+ L +D+ LKPT++ VPR+ R+++ K + +
Sbjct: 277 HILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQE 336
Query: 368 IRPSFIKRLMFN 379
+ P +RL+FN
Sbjct: 337 LNP--RRRLIFN 346
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid
metabolism].
Length = 613
Score = 232 bits (595), Expect = 7e-71
Identities = 95/296 (32%), Positives = 146/296 (49%), Gaps = 13/296 (4%)
Query: 104 WRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYS 163
++ I Y + R R SGLL LG+ G V I++ N PEW I +
Sbjct: 35 LMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALG 94
Query: 164 MIIVALYDTLGPDACAFIINQAEISVLIVDDD---SKCNQIIDRAPRCLKKIISIREVRM 220
+ V +Y T P+ A+I+N++E V+ V++ +++ P+ + I+ I VR
Sbjct: 95 AVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVRE 154
Query: 221 AT----MQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVML 276
A + I F A PPKP DL TI YTSGTTG PKGVML
Sbjct: 155 AVEAKALVLEVFPDEGISLFLI---DSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVML 211
Query: 277 THGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSGDIK 336
TH N++A ++ L P D ++SFLPLAH+ ER E + L GG + D +
Sbjct: 212 THRNLLAQVAGIDEVLPPIGPG--DRVLSFLPLAHIFERAFEGGLALYGGVTVLFKEDPR 269
Query: 337 NLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPS-FIKRLMFNMAMGSKENEIKK 391
L ED+K ++PT+M VPR+ ++Y +M ++ + ++R +F A+ +I +
Sbjct: 270 TLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISR 325
>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 228 bits (582), Expect = 1e-68
Identities = 122/327 (37%), Positives = 179/327 (54%), Gaps = 13/327 (3%)
Query: 75 LSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISR---PYQWIHYNQALLRARNFGSGL 131
L L D+ + + F K+ N + LG RQ PY W+ Y + A GS +
Sbjct: 35 LLDLPADIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAI 94
Query: 132 LGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLI 191
GVNPG GIY NCPEWII + + V LYDTLG +A FIIN AE+S+
Sbjct: 95 RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAF 154
Query: 192 VDDDSKCNQIIDRAPRC---LKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMF 248
V +SK + I+ P+C LK I+S +V + A + ++E +G+
Sbjct: 155 V-QESKISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSLDC- 212
Query: 249 EEVPPK-PTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAA--LLQLSDHRPKYSDVLIS 305
E+PPK TD+CTI YTSGTTG PKGV+LT+ +IA + + LL+++D D S
Sbjct: 213 -ELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFS 271
Query: 306 FLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM 365
+LPLAH+ ++ E+ G SIG++ GDI+ L ED++ LKPTI VPR+ +R+Y +M
Sbjct: 272 YLPLAHVYDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIM 331
Query: 366 AQIRPS-FIKRLMFNMAMGSKENEIKK 391
+I +++ +F+ A K ++K
Sbjct: 332 QKISSGGMLRKKLFDFAYNYKLGNLRK 358
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and
Bubblegum-like very long-chain fatty acid CoA
synthetases. This family includes long-chain fatty acid
(C12-C20) CoA synthetases and Bubblegum-like very
long-chain (>C20) fatty acid CoA synthetases. FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
Eukaryotes generally have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells. Drosophila melanogaster
mutant bubblegum (BGM) have elevated levels of
very-long-chain fatty acids (VLCFA) caused by a
defective gene later named bubblegum. The human homolog
(hsBG) of bubblegum has been characterized as a very
long chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. Free fatty
acids must be "activated" to their CoA thioesters before
participating in most catabolic and anabolic reactions.
Length = 456
Score = 204 bits (522), Expect = 1e-61
Identities = 82/274 (29%), Positives = 126/274 (45%), Gaps = 63/274 (22%)
Query: 111 PYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALY 170
+Q I + + R R +GL+ LGV PG V I ++N PEW+I + + V +Y
Sbjct: 2 IWQTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIY 61
Query: 171 DTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRA 230
T P+ A+I+ +DS +
Sbjct: 62 PTSSPEEVAYIL-----------NDSGARVVF---------------------------- 82
Query: 231 IEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALL 290
V KP DL T+ YTSGTTGNPKGVMLTH N++A AALL
Sbjct: 83 --------------------VEDKPDDLATLIYTSGTTGNPKGVMLTHRNLLAQA-AALL 121
Query: 291 QLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIM 350
++ P D ++SFLPLAH+ E+ + L G+ ++ + L ED++ ++PT+
Sbjct: 122 EVIPLSPG--DRVLSFLPLAHVFEQRLGEYLPLSSGARVNFAESPETLLEDLREVRPTVF 179
Query: 351 PAVPRLLNRMYDKVMAQIR-PSFIKRLMFNMAMG 383
AVPR+ ++Y + A++ +KR +F A+G
Sbjct: 180 FAVPRVWEKIYAGIEAKVAAAGPLKRKLFRWALG 213
>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase.
Length = 666
Score = 207 bits (529), Expect = 5e-61
Identities = 106/321 (33%), Positives = 176/321 (54%), Gaps = 10/321 (3%)
Query: 80 DDVKTLYDAFRKGAKESNNGRCLGWRQNIS-RP--YQWIHYNQALLRARNFGSGLLGLGV 136
+ + + +D FR ++ N LG R+ + +P Y W Y + G+ L +GV
Sbjct: 42 EGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGV 101
Query: 137 NPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDS 196
+ GIY N PEWII+ + + + V LYDTLG A FII+ +E+S++ V++
Sbjct: 102 KDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEE-K 160
Query: 197 KCNQIIDRAP---RCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPP 253
K +++ P +K ++S V + A + + I +DE ++G K ++
Sbjct: 161 KISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIK 220
Query: 254 KPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYS--DVLISFLPLAH 311
K +D+CTI YTSGTTG+PKGVM+++ +++ I+ + L + DV +S+LPLAH
Sbjct: 221 KKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAH 280
Query: 312 MLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRP- 370
+ +R E G +IG++ GD+K L ED+ LKPTI AVPR+L+R+Y + ++
Sbjct: 281 IFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDG 340
Query: 371 SFIKRLMFNMAMGSKENEIKK 391
F+K+ +F+ A K +KK
Sbjct: 341 GFLKKFVFDSAFSYKFGNMKK 361
>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family
protein.
Length = 696
Score = 199 bits (509), Expect = 8e-58
Identities = 108/335 (32%), Positives = 166/335 (49%), Gaps = 56/335 (16%)
Query: 75 LSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISR-----------------PYQWIHY 117
+ T ++ TL F + K+ ++ R LG R+ ISR Y+WI Y
Sbjct: 50 VETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITY 109
Query: 118 NQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDA 177
Q R NF SGL+ LG N V I++ EW+I QG + ++ +V +Y +LG +A
Sbjct: 110 GQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEA 169
Query: 178 CAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQR------------ 225
+N+ E++ +I D LKK+I I ++ T++R
Sbjct: 170 LCHSLNETEVTTVICDSKQ------------LKKLIDISS-QLETVKRVIYMDDEGVDSD 216
Query: 226 ---ARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVI 282
+ S + F E+E++G + + P P D+ I YTSG+TG PKGVM+THGN++
Sbjct: 217 SSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIV 276
Query: 283 AAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGY--------YSGD 334
A ++ + + DV +++LPLAH+LE ES M VG +IGY S
Sbjct: 277 ATVAGVMTVVPKLGKN--DVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNK 334
Query: 335 IKNLTE-DMKTLKPTIMPAVPRLLNRMYDKVMAQI 368
IK T+ D LKPT+M AVP +L+R+ D V ++
Sbjct: 335 IKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKV 369
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme.
Length = 412
Score = 175 bits (445), Expect = 9e-51
Identities = 68/266 (25%), Positives = 102/266 (38%), Gaps = 17/266 (6%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPD 176
Y + RA + L LGV PG V I N PEW++ V L +L +
Sbjct: 2 YRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPAE 61
Query: 177 ACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRF 236
A+I+ +E VLI DD+ + + + I +
Sbjct: 62 RLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVG----------DDGEGLDLL 111
Query: 237 DEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHR 296
D+ GA P P DL I YTSGTTG PKGVMLTH N++A + +
Sbjct: 112 DDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGLTP 171
Query: 297 PKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG---DIKNLTEDMKTLKPTIMPAV 353
D ++ LPL L GG++ D L + ++ K T++ V
Sbjct: 172 G---DRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGV 228
Query: 354 PRLLNRMYDKVMAQIRP-SFIKRLMF 378
P LL + + S ++ ++
Sbjct: 229 PTLLRLLLKAPEEKKYDLSSLRLVLS 254
>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA
synthetase (LC-FACS), including Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase.
The members of this family are bacterial long-chain
fatty acid CoA synthetase. Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase
in this family is involved in the synthesis of
isoprenoid wax ester storage compounds when grown on
phytol as the sole carbon source. LC-FACS catalyzes the
formation of fatty acyl-CoA in a two-step reaction: the
formation of a fatty acyl-AMP molecule as an
intermediate, and the formation of a fatty acyl-CoA.
Free fatty acids must be "activated" to their CoA
thioesters before participating in most catabolic and
anabolic reactions.
Length = 504
Score = 149 bits (378), Expect = 2e-40
Identities = 75/271 (27%), Positives = 127/271 (46%), Gaps = 23/271 (8%)
Query: 110 RPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVAL 169
Y W Q +AR + L LG+ PG + I S+NC EWII + + + V L
Sbjct: 5 HEYTW---AQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPL 61
Query: 170 YDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSR 229
Y TL + +++ ++ L V K + + + +I +T++
Sbjct: 62 YPTLTAETIRYVLEHSDAKALFVG---KLDDWDAMKAGVPEGLPTIILFPYSTLKDHYK- 117
Query: 230 AIEIIRFDEIERVGAQKMFEEVP-PKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAA 288
+D++ + A + + P P+P DL TI YTSGTTG PKGVML+ G A
Sbjct: 118 ------WDDL--LAATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVMLSFGAFAFAAQGT 169
Query: 289 --LLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLK 346
++ L+ + D L+S+LPLAH+ ER L G+ ++ + D++ +
Sbjct: 170 IEIIGLTPN-----DRLLSYLPLAHIAERVIVEGGSLYSGAEVFFVESLDTFAADLQRAR 224
Query: 347 PTIMPAVPRLLNRMYDKVMAQIRPSFIKRLM 377
PT+ +VPRL + ++A++ P + L+
Sbjct: 225 PTVFFSVPRLWTKFQQGILAKLPPEKLNLLL 255
>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA
synthetase (VL-FACS). This family of very long-chain
fatty acid CoA synthetase is named bubblegum because
Drosophila melanogaster mutant bubblegum (BGM) has
elevated levels of very-long-chain fatty acids (VLCFA)
caused by a defective gene of this family. The human
homolog (hsBG) has been characterized as a very long
chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. VL-FACS is
involved in the first reaction step of very long chain
fatty acid degradation. It catalyzes the formation of
fatty acyl-CoA in a two-step reaction: the formation of
a fatty acyl-AMP molecule as an intermediate, and the
formation of a fatty acyl-CoA. Free fatty acids must be
"activated" to their CoA thioesters before participating
in most catabolic and anabolic reactions.
Length = 594
Score = 146 bits (371), Expect = 5e-39
Identities = 85/286 (29%), Positives = 139/286 (48%), Gaps = 25/286 (8%)
Query: 112 YQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYD 171
+ + Y Q R L LG+ VGI N PEW I GA I V +Y
Sbjct: 6 WHTLTYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGIAVGIYT 65
Query: 172 TLGPDACAFIINQAEISVLIVDDD---SKCNQIIDRAPRCLKKIISIREVRMATMQRARS 228
T P+AC ++ +E ++L+VD+ K I D+ P LK II RE ++
Sbjct: 66 TNSPEACQYVAETSEANILVVDNAKQLQKILAIQDQLPH-LKAIIQYRE----PLKEKE- 119
Query: 229 RAIEIIRFDEIERVGAQKMFEEVPP-----KPTDLCTICYTSGTTGNPKGVMLTHGNVIA 283
+ + E +G E++ KP CT+ YTSGTTG PKGVML+H N I
Sbjct: 120 --PNLYSWKEFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDN-IT 176
Query: 284 AISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFL---VGGSIGYYSGD-IK-NL 338
+ A ++ D R + ++S+LPL+H+ + + ++L VGG + + D +K L
Sbjct: 177 WTAKAAVKHMDLRTVGQESVVSYLPLSHIAAQILD--IWLPISVGGCVYFAQPDALKGTL 234
Query: 339 TEDMKTLKPTIMPAVPRLLNRMYDKVMA-QIRPSFIKRLMFNMAMG 383
+ ++ ++PT VPR+ ++ +++ A + + +KR + + A G
Sbjct: 235 VKTLREVRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWAKG 280
>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional.
Length = 700
Score = 136 bits (344), Expect = 5e-35
Identities = 82/304 (26%), Positives = 138/304 (45%), Gaps = 41/304 (13%)
Query: 113 QWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDT 172
++I Y + R NFG GL LG+ GS V IY + EW+ + G + SM+ +Y
Sbjct: 120 RYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYAN 179
Query: 173 LGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRA------ 226
LG DA A+ + + E ++ CN + + ++ + ++ M
Sbjct: 180 LGEDALAYALRETECKAIV------CNG------KNVPNLLRL--MKSGGMPNTTIIYLD 225
Query: 227 ------RSRAIEIIRFDEIERVGAQKMFEEVPPKPT---DLCTICYTSGTTGNPKGVMLT 277
+ ++ + ++ G P DL I YTSGTTG+PKGVM T
Sbjct: 226 SLPASVDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHT 285
Query: 278 HGNVIAAISAALLQLSD--HRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSGDI 335
HG++ A I A +L+D P+ + S+LPLAH++E + G IG+ G
Sbjct: 286 HGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGF--GSP 343
Query: 336 KNLTE-------DMKTLKPTIMPAVPRLLNRMYDKVMAQI-RPSFIKRLMFNMAMGSKEN 387
+ LT+ D+ +P + VPR+ + + V A++ +KR +F+ A S+
Sbjct: 344 RTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLR 403
Query: 388 EIKK 391
+K+
Sbjct: 404 ALKE 407
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 534
Score = 134 bits (340), Expect = 6e-35
Identities = 77/287 (26%), Positives = 119/287 (41%), Gaps = 30/287 (10%)
Query: 84 TLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVG 143
TL + A+ + + L + R + Y + RA + L LGV PG V
Sbjct: 12 TLASLLERAARRNPDRPALIFLGRGGR----LTYRELDRRANRLAAALQALGVKPGDRVA 67
Query: 144 IYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIID 203
I N PE++I A + V L L P A+I+N A VLI + +++
Sbjct: 68 ILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFA--ALLE 125
Query: 204 RAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICY 263
L ++ + V A + I + + G + P P DL + Y
Sbjct: 126 AVAEALPVVLVVLLVGDADDRLP-------ITLEALAAEGPGPDADARPVDPDDLAFLLY 178
Query: 264 TSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAH-------MLERT 316
TSGTTG PKGV+LTH N++A + L DV++S+LPL H +L
Sbjct: 179 TSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTP-DDVVLSWLPLFHIFGLIVGLL--- 234
Query: 317 CESAMFLVGGSIGYYSG---DIKNLTEDMKTLKPTIMPAVPRLLNRM 360
A L GG++ S D + + ++ K T++ VP L +
Sbjct: 235 ---APLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLREL 278
>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.
Length = 521
Score = 104 bits (263), Expect = 1e-24
Identities = 69/291 (23%), Positives = 121/291 (41%), Gaps = 36/291 (12%)
Query: 79 YDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNP 138
D T+ R GA+ + ++ + + Y + R + L LGV
Sbjct: 2 QDYPLTIGRILRHGAR--KHPD----KEAVYFDGRRTTYAELDERVNRLANALRALGVKK 55
Query: 139 GSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLG----PDACAFIINQAEISVLIVDD 194
G V ++ N E++ AY I A+ + P+ A+I+N AE V++VD
Sbjct: 56 GDRVAVFDWNSHEYLE----AYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDS 111
Query: 195 D--SKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVP 252
+ I+ + P ++ +I + A + A E+ ++E+ A F+
Sbjct: 112 EFVPLLAAILPQLPT-VRTVIVEGDGPAAPL------APEVGEYEEL-LAAASDTFDFPD 163
Query: 253 PKPTDLCTICYTSGTTGNPKGVMLTHGNVI--AAISAALLQLSDHRPKYSDVLISFLPLA 310
D + YTSGTTG+PKGV+L+H N+ + A L+LS DV + +P+
Sbjct: 164 IDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSR-----DDVYLVIVPMF 218
Query: 311 HMLERTCESAMFLVGGSI---GYYSGDIKNLTEDMKTLKPTIMPAVPRLLN 358
H+ + G + D +NL + ++T + T AVP +
Sbjct: 219 HVHAWGLPYLALMAGAKQVIPRRF--DPENLLDLIETERVTFFFAVPTIWQ 267
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting
insects and 4-Coumarate-CoA Ligase (4CL). This family
contains two functionally unique groups of proteins; one
group is insect firefly luciferases and the other is
plant 4-coumarate:coenzyme A ligases. However, they
share significant sequence similarity in spite of their
functional diversity. Luciferase catalyzes the
production of light in the presence of MgATP, molecular
oxygen, and luciferin. In the first step, luciferin is
activated by acylation of its carboxylate group with
ATP, resulting in an enzyme-bound luciferyl adenylate.
In the second step, luciferyl adenylate reacts with
molecular oxygen, producing an enzyme-bound excited
state product (Luc=O*) and releasing AMP. This
excited-state product then decays to the ground state
(Luc=O), emitting a quantum of visible light.
4-coumarate:coenzyme A ligase is a key enzyme in the
phenylpropanoid metabolic pathway for monolignol and
flavonoid biosynthesis. It catalyzes the synthesis of
hydroxycinnamate-CoA thioesters in a two-step reaction,
involving the formation of hydroxycinnamate-AMP
anhydride and then the nucleophilic substitution of AMP
by CoA. The phenylpropanoid pathway is one of the most
important secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 487
Score = 104 bits (262), Expect = 1e-24
Identities = 56/198 (28%), Positives = 87/198 (43%), Gaps = 10/198 (5%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPD 176
+ L +A GL LG+ G V + S N E+ G I+ A + PD
Sbjct: 13 FADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYTPD 72
Query: 177 ACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRF 236
A + ++ ++ D D +D+ K++ VR+ + A + I
Sbjct: 73 ELAHQLKISKPKLIFCDPD-----ELDKVKEAAKELG--PVVRIIVLDSAPDGVLRIEDL 125
Query: 237 DEIERVGAQKMFEEVPPK--PTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSD 294
E R+GA+ F P D + Y+SGTTG PKGVML+H N+IA +S L
Sbjct: 126 LEP-RLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNIIANLSQVQDTLKG 184
Query: 295 HRPKYSDVLISFLPLAHM 312
+ +DV+++FLP H
Sbjct: 185 NPDSSNDVVLTFLPFYHA 202
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 100 bits (252), Expect = 4e-23
Identities = 54/173 (31%), Positives = 93/173 (53%), Gaps = 16/173 (9%)
Query: 209 LKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTT 268
L+KI ++E +A+ I II FD++ + ++ P + +I YTSGT+
Sbjct: 265 LEKIKDLKE-------KAKKLGISIILFDDMTK-NKTTNYKIQNEDPDFITSIVYTSGTS 316
Query: 269 GNPKGVMLTHGNVIAAISAALLQLSDH--RPKYS-DVLISFLPLAHMLERTCESAMFLVG 325
G PKGVML++ N + ++ L H KY+ +S+LP++H+ ER F++G
Sbjct: 317 GKPKGVMLSNKN----LYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLG 372
Query: 326 GSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQI-RPSFIKRLM 377
G+I +S DI ++D+ K I+ VP++ NR+Y +M +I +KR +
Sbjct: 373 GTINIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFL 425
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA
synthetases similar to Escherichia coli FadD. This
subfamily of the AMP-forming adenylation family contains
Escherichia coli FadD and similar prokaryotic fatty acid
CoA synthetases. FadD was characterized as a long-chain
fatty acid CoA synthetase. The gene fadD is regulated by
the fatty acid regulatory protein FadR. Fatty acid CoA
synthetase catalyzes the formation of fatty acyl-CoA in
a two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions.
Length = 468
Score = 99.1 bits (248), Expect = 1e-22
Identities = 68/288 (23%), Positives = 102/288 (35%), Gaps = 70/288 (24%)
Query: 85 LYDAFRKGAKESNNG---RCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSF 141
L D + A+ + G + ++ Y + + F + L LGV G
Sbjct: 1 LADLLERAARRFPDRPALTFFG--RKLT-------YAELDELSDRFAAYLQQLGVKKGDR 51
Query: 142 VGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQI 201
V + NCP++ I G ++V + P +N + VLIV
Sbjct: 52 VALMLPNCPQFPIAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAKVLIVA-------- 103
Query: 202 IDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTI 261
I F++ GA + V P DL +
Sbjct: 104 --------------------------------ISFEDALASGA-PLPLPVELSPDDLAVL 130
Query: 262 CYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAM 321
YT GTTG PKG MLTH N++A + + D R D ++ LPL H+ T M
Sbjct: 131 QYTGGTTGVPKGAMLTHRNLVANVQQIAAWVKDLREG-EDRFLTALPLFHIFGLTV--NM 187
Query: 322 FLVGGSIGYYSG---------DIKNLTEDMKTLKPTIMPAVPRLLNRM 360
L G G N+ +++K + TI P VP L N +
Sbjct: 188 LL-----GLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVPTLYNAL 230
>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL). 4-Coumarate:coenzyme A
ligase is a key enzyme in the phenylpropanoid metabolic
pathway for monolignol and flavonoid biosynthesis. It
catalyzes the synthesis of hydroxycinnamate-CoA
thioesters in a two-step reaction, involving the
formation of hydroxycinnamate-AMP anhydride and the
nucleophilic substitution of AMP by CoA. The
phenylpropanoid pathway is one of the most important
secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 504
Score = 88.5 bits (220), Expect = 4e-19
Identities = 57/247 (23%), Positives = 91/247 (36%), Gaps = 33/247 (13%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPD 176
Y + R +GL G G V + S N E+ + + A+ T P
Sbjct: 35 YAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAV----LSAGAVVTTANPL 90
Query: 177 ACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRF 236
AEI+ + DS ++ +K+ S+ + + A + I
Sbjct: 91 Y-----TPAEIAKQV--KDSGA-KLAITTSELAEKLASLALEPVVLLDSADDGSAAIDDL 142
Query: 237 DEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHR 296
+ V K D+ + Y+SGTTG KGVMLTH N+IA + A L+
Sbjct: 143 LFADEPEPPV----VVIKQDDVAALPYSSGTTGRSKGVMLTHRNLIANV-AQLVAGEGPN 197
Query: 297 PKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG---------DIKNLTEDMKTLKP 347
DV + LP+ H+ T + L+ G D++ ++ K
Sbjct: 198 FDREDVTLCVLPMFHIYGLT----VILLALL---RLGATVVVMPRFDLEKFLAAIEKYKV 250
Query: 348 TIMPAVP 354
T +P VP
Sbjct: 251 THLPVVP 257
>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.
Length = 513
Score = 87.7 bits (218), Expect = 9e-19
Identities = 57/246 (23%), Positives = 95/246 (38%), Gaps = 19/246 (7%)
Query: 123 RARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFII 182
R R + L LG+ G V I++ N P W+I GA ++V L D A+I+
Sbjct: 39 RVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTADEAAYIL 98
Query: 183 NQAEISVLIVDDD--SKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIE 240
+ + L V R P L+ ++ + ++ F +
Sbjct: 99 ARGDAKALFVLGLFLGVDYSATTRLPA-LEHVVICET------EEDDPHTEKMKTFTDFL 151
Query: 241 RVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAIS--AALLQLSDHRPK 298
G P D+ I +TSGTTG PKG MLTH +++ + A L L
Sbjct: 152 AAGDPA-ERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGL---TEG 207
Query: 299 YSDVLISFLPLAHMLERT-CESAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRL 356
D ++ P H+ +A + G +I D + ++T + T++P P +
Sbjct: 208 --DRYLAANPFFHVFGYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTM 265
Query: 357 LNRMYD 362
N +
Sbjct: 266 YNSLLQ 271
>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. The fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family was shown catalyzing the
long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified from
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes uncharacterized FACS
proteins.
Length = 517
Score = 87.3 bits (217), Expect = 1e-18
Identities = 51/193 (26%), Positives = 83/193 (43%), Gaps = 24/193 (12%)
Query: 107 NISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPE-----WIITEQGAYC 161
Y R R + L LGV PG V + N + + GA
Sbjct: 18 TPDGSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLELYFAVPGMGAVL 77
Query: 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDR-APRC--LKKIISIREV 218
+++ L P+ A+IIN AE V+ VDDD +++ APR +K ++ +
Sbjct: 78 HTLNP-----RLSPEQIAYIINHAEDKVIFVDDDFL--PLLEAIAPRLPTVKAVVVYDDA 130
Query: 219 RMATMQRARSRAIEIIRFDE-IERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLT 277
M + + ++E +E + + E+ +CYTSGTTGNPKGV+ +
Sbjct: 131 DMP-----ETSLPNVYAYEELLEEESPEYEWPELDE--NTAAGLCYTSGTTGNPKGVVYS 183
Query: 278 H-GNVIAAISAAL 289
H V+ +++AL
Sbjct: 184 HRSLVLHTLASAL 196
>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar
to LC-FACS from Thermus thermophiles and Arabidopsis.
This family includes fatty acyl-CoA synthetases that can
activate medium to long-chain fatty acids. These enzymes
catalyze the ATP-dependent acylation of fatty acids in a
two-step reaction. The carboxylate substrate first
reacts with ATP to form an acyl-adenylate intermediate,
which then reacts with CoA to produce an acyl-CoA ester.
Fatty acyl-CoA synthetases are responsible for fatty
acid degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid. Also included
in this family are acyl activating enzymes from
Arabidopsis, which contains a large number of proteins
from this family with up to 63 different genes, many of
which are uncharacterized.
Length = 520
Score = 85.8 bits (213), Expect = 3e-18
Identities = 53/190 (27%), Positives = 79/190 (41%), Gaps = 17/190 (8%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWI-----ITEQGAYCYSMIIVALYD 171
Y + R R S L LG+ G V + + N P + + GA ++V L
Sbjct: 32 YRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPMAGA-----VLVPLNT 86
Query: 172 TLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAI 231
L D AFI+N +E VL VD + + + A L I + +
Sbjct: 87 RLDADDIAFILNHSEAKVLFVD--QEFLSLAEEALALLSTKEIIDT--EIIVISPAAEDS 142
Query: 232 EIIRFDEIERVGAQKMFEEVPPKPT-DLCTICYTSGTTGNPKGVMLTH-GNVIAAISAAL 289
E ++++ G +PP D ++ YTSGTTGNPKGV+ TH G + A+ +
Sbjct: 143 EEGDYEDL-LAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHRGAYLNALGNVI 201
Query: 290 LQLSDHRPKY 299
RP Y
Sbjct: 202 EWGMPDRPVY 211
>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated.
Length = 559
Score = 83.7 bits (208), Expect = 2e-17
Identities = 55/201 (27%), Positives = 80/201 (39%), Gaps = 56/201 (27%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQ------GAYCYSMIIVALY 170
Y + GLL LG+ G VGI++ N PEW++T Q GA I+V
Sbjct: 46 YREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLT-QFATAKIGA-----ILV--- 96
Query: 171 DTLGPDAC-----AFIINQAEISVLIVDD---DSKCNQIIDR-APRC------------- 208
T+ P A + +NQ+ LI D DS ++ AP
Sbjct: 97 -TINP-AYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARL 154
Query: 209 --LKKIISIREVRMATMQR-----ARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTI 261
L+++I + + + M A RA++ + + P D I
Sbjct: 155 PELRRVIFLGDEKHPGMLNFDELLALGRAVDDAELAARQ--------ATL--DPDDPINI 204
Query: 262 CYTSGTTGNPKGVMLTHGNVI 282
YTSGTTG PKG LTH N++
Sbjct: 205 QYTSGTTGFPKGATLTHRNIL 225
>gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional.
Length = 1452
Score = 81.4 bits (201), Expect = 1e-16
Identities = 67/285 (23%), Positives = 114/285 (40%), Gaps = 21/285 (7%)
Query: 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSF 141
V++L + + + + RCLG +W+ Y RAR GSGLL LGV PG
Sbjct: 426 VRSLGEMWERSVTRHSTFRCLGQTSESGES-EWLTYGTVDARARELGSGLLALGVRPGDV 484
Query: 142 VGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQI 201
+G+ + +I E Y + L +I++ +I V+ D +S +
Sbjct: 485 IGVDCEASRNIVILEVACALYGFTTLPLVGK--GSTMRTLIDEHKIKVVFADRNSVAAIL 542
Query: 202 IDRAPRCLKKIISIREVRMAT-MQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCT 260
R+ R L+ ++ AR I +I ++ +E+ G VP K
Sbjct: 543 TCRS-RKLETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKGRLCP---VPLKEHVTTD 598
Query: 261 ICYT-------SGTTGNPKGVMLTHGNVIAAISAALLQ--LSDHRPKYSDVLISFLPLAH 311
+T S + V +TH +V+ IS ++ L K+ ++ F P A
Sbjct: 599 TVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHL--MVHFTPFAM 656
Query: 312 MLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRL 356
+ R +F G ++ + D +L +PTI+ A P L
Sbjct: 657 LFNRVFVLGLFAHGSAVA--TVDAAHLQRAFVKFQPTILVAAPSL 699
>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional.
Length = 558
Score = 80.2 bits (198), Expect = 3e-16
Identities = 54/199 (27%), Positives = 84/199 (42%), Gaps = 21/199 (10%)
Query: 129 SGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEIS 188
GLL LGV PG VGI++ NC EW++T+ I+V + + + Q+ +
Sbjct: 60 RGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVR 119
Query: 189 VLIVDDDSKCNQIIDRAPRCLKKIIS-----IREVRMATMQRARSRAIE----IIRFDEI 239
+I D K + L + + R+ ++ S A + + E+
Sbjct: 120 WVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAPPPGFLAWHEL 179
Query: 240 ----ERVGAQKMFE-EVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVI--AAISAALLQL 292
E V + + E + D I YTSGTTG PKG L+H N++ A L L
Sbjct: 180 QARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGL 239
Query: 293 SDHRPKYSDVLISFLPLAH 311
++H D L +PL H
Sbjct: 240 TEH-----DRLCVPVPLYH 253
>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase;
Validated.
Length = 517
Score = 79.3 bits (196), Expect = 5e-16
Identities = 68/295 (23%), Positives = 119/295 (40%), Gaps = 31/295 (10%)
Query: 105 RQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSM 164
+ R Y ++ N+ + R N LG+ G V ++ NCPE+I G
Sbjct: 31 SGGVVRRYSYLELNEEINRTANL---FYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGA 87
Query: 165 IIVALYDTLGPDACAFIINQAEISVLIVDDD--SKCNQIIDRAPRCLKKIISIREVRMAT 222
I+V + L + A+I+ ++ S+L+ QI L+ I R
Sbjct: 88 IMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVA---- 143
Query: 223 MQRARSRAIE-IIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNV 281
A + + F +++ + P D I +TSGTT PKGV++TH N+
Sbjct: 144 -----LPADDGVSSFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNL 198
Query: 282 IAA--ISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAM--FLVGGS---IGYYSGD 334
A SA L + DV ++ +P H ++ C +AM F G + + YS
Sbjct: 199 RFAGYYSAWQCAL-----RDDDVYLTVMPAFH-IDCQCTAAMAAFSAGATFVLLEKYSA- 251
Query: 335 IKNLTEDMKTLKPTIMPAVPRLLNR-MYDKVMAQIRPSFIKRLMFNMAMGSKENE 388
+ + + TI +P ++ M A R ++ +MF + + +E +
Sbjct: 252 -RAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMFYLNLSDQEKD 305
>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated.
Length = 523
Score = 78.4 bits (194), Expect = 9e-16
Identities = 42/184 (22%), Positives = 70/184 (38%), Gaps = 10/184 (5%)
Query: 128 GSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEI 187
+ LL LG+ G V N + + + V + L + A+I++ +
Sbjct: 50 AAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGA 109
Query: 188 SVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKM 247
+VD + A L + + ++ + R + F + G+
Sbjct: 110 RAFLVDPA-----LAPTAEAALALLPV-DTLILSLVLGGREAPGGWLDFADWAEAGSVAE 163
Query: 248 FEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFL 307
+ V DL I YTSGT PKG MLTH +IA + ++ D D+ + L
Sbjct: 164 PD-VELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-DMSA--DDIPLHAL 219
Query: 308 PLAH 311
PL H
Sbjct: 220 PLYH 223
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I. This
family includes acyl- and aryl-CoA ligases, as well as
the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The
adenylate-forming enzymes catalyze an ATP-dependent
two-step reaction to first activate a carboxylate
substrate as an adenylate and then transfer the
carboxylate to the pantetheine group of either coenzyme
A or an acyl-carrier protein. The active site of the
domain is located at the interface of a large N-terminal
subdomain and a smaller C-terminal subdomain.
Length = 338
Score = 76.9 bits (190), Expect = 1e-15
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 257 DLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLER- 315
D I YTSGTTG PKGV+L+H N++A A + DVL+S LPL H++
Sbjct: 1 DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEG---DVLLSVLPLFHVVGGG 57
Query: 316 TCESAMFLVGGSIGYYSG--DIKNLTEDMKTLKPTIMPAVPRLLNRM 360
+ L GG++ Y G + E ++ + T++ VP L + +
Sbjct: 58 SGLLGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDAL 104
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
[Lipid metabolism].
Length = 528
Score = 76.9 bits (190), Expect = 3e-15
Identities = 63/260 (24%), Positives = 84/260 (32%), Gaps = 33/260 (12%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPD 176
Y + L LG G V IY N PE +I I + L +
Sbjct: 43 YGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAE 102
Query: 177 ACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRF 236
A A I VLI DD + R + + + V + + R + +
Sbjct: 103 AVADRIADLGPKVLIADDGT------FRNGKEIALLEDADAVLSSVVVVPRLG----LWY 152
Query: 237 DEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHR 296
DE A + FE P D + YTSGTTG PKG++ +HG + D
Sbjct: 153 DE-AVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLL 211
Query: 297 PK-----YSDV-------LISFLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKT 344
P SD F PLA + L G Y + E
Sbjct: 212 PGDRFWNSSDPGWIYGLWYSVFSPLAS------GATTVLYDGRPFYSPERLWEALEKY-- 263
Query: 345 LKPTIMPAVPRLLNRMYDKV 364
K TI P L R K+
Sbjct: 264 -KVTIFGTSPTFL-RRLMKL 281
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase.
The members of this family are putative long-chain fatty
acyl-CoA synthetases, which catalyze the ATP-dependent
activation of fatty acids in a two-step reaction. The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. Fatty acyl-CoA synthetases
are responsible for fatty acid degradation as well as
physiological regulation of cellular functions via the
production of fatty acyl-CoA esters.
Length = 430
Score = 75.4 bits (186), Expect = 6e-15
Identities = 47/198 (23%), Positives = 64/198 (32%), Gaps = 64/198 (32%)
Query: 115 IHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLG 174
I Y + L L GV G V +Y QN P+++I ++V +
Sbjct: 2 ITYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNR 61
Query: 175 PDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEII 234
I+N + VLIV
Sbjct: 62 EAELEHILNDSGARVLIV------------------------------------------ 79
Query: 235 RFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIA-AISAALLQLS 293
E++ V I YTSGTTG PKG M TH V+A A ++A
Sbjct: 80 -GSELDDVAV----------------IPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGL 122
Query: 294 DHRPKYSDVLISFLPLAH 311
VL++FLPL H
Sbjct: 123 TP----DSVLLAFLPLFH 136
>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the
class I adenylate forming enzyme family and is
homologous to fatty acyl-coenzyme A (CoA) ligases
(FACLs). However, FAALs produce only the acyl adenylate
and are unable to perform the thioester-forming
reaction, while FACLs perform a two-step catalytic
reaction; AMP ligation followed by CoA ligation using
ATP and CoA as cofactors. FAALs have insertion motifs
between the N-terminal and C-terminal subdomains that
distinguish them from the FACLs. This insertion motif
precludes the binding of CoA, thus preventing CoA
ligation. It has been suggested that the acyl adenylates
serve as substrates for multifunctional polyketide
synthases to permit synthesis of complex lipids such as
phthiocerol dimycocerosate, sulfolipids, mycolic acids,
and mycobactin.
Length = 547
Score = 74.2 bits (183), Expect = 3e-14
Identities = 49/193 (25%), Positives = 79/193 (40%), Gaps = 28/193 (14%)
Query: 123 RARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGP----DAC 178
RAR + L LG PG V + + +++ G I V
Sbjct: 32 RARAIAARLQALG-APGDRVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPPRRLGRHLARL 90
Query: 179 AFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDE 238
A I+ A ++ + +R A + + + +I D+
Sbjct: 91 AAILADAGARAVLTTSAV------------------LAALRAA-LAAPAALLLLLIAADD 131
Query: 239 IERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPK 298
+ + A + PP P D+ + YTSG+TG PKGVM+THGN++A + A+ + P
Sbjct: 132 LAALAAA-DWRPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANL-RAIARAFGLDP- 188
Query: 299 YSDVLISFLPLAH 311
DV +S+LPL H
Sbjct: 189 -DDVGVSWLPLYH 200
>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase
A-associated. This group of proteins contains an
AMP-binding domain (pfam00501) associated with acyl
CoA-ligases. These proteins are generally found in
genomes containing the exosortase/PEP-CTERM protein
expoert system , specifically the type 1 variant of this
system described by the Genome Property GenProp0652.
When found in this context they are invariably present
next to a decarboxylase enzyme. A number of sequences
from Burkholderia species also hit this model, but the
genomic context is obviously different. The hypothesis
of a constant substrate for this family is only strong
where the exosortase context is present.
Length = 517
Score = 73.7 bits (181), Expect = 3e-14
Identities = 57/217 (26%), Positives = 95/217 (43%), Gaps = 13/217 (5%)
Query: 115 IHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLG 174
+ Y R SGL GLG+ G V IY E + GA + V + L
Sbjct: 26 LTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLK 85
Query: 175 PDACAFIINQAEISVLIVDDDSKCNQIIDRAPRC--LKKIISIREVRMATMQRARSRAIE 232
+ A I+ + +L+ + + + + P C L+ +I + + A+ E
Sbjct: 86 AEQVAHILADCNVRLLVTSSE-RLDLLHPALPGCHDLRTLIIVGDPAHASEGHPGE---E 141
Query: 233 IIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIA-AISAALLQ 291
+ ++ +G P +D+ I YTSG+TG PKGV+L+H N++A A S A
Sbjct: 142 PASWPKLLALGDAD--PPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVA--T 197
Query: 292 LSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSI 328
++RP D L++ LPL+ + F VG ++
Sbjct: 198 YLENRPD--DRLLAVLPLSFDYGFNQLTTAFYVGATV 232
>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated.
Length = 546
Score = 72.3 bits (178), Expect = 9e-14
Identities = 46/194 (23%), Positives = 76/194 (39%), Gaps = 19/194 (9%)
Query: 134 LGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVD 193
GV G V +Y QN P+++I + ++V + + A + + V IV
Sbjct: 56 CGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVG 115
Query: 194 DD--SKCNQIIDRAPRCLKKIISIR---------EVRMATMQRARSRAIEIIRFDEI--- 239
+ K + L+ +I + E+ + RA + +
Sbjct: 116 SELAPKVAPAVGNLR--LRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPGGVVAWK 173
Query: 240 ERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKY 299
E + A P DL + YTSGTTG PKG M TH V+A ++L +
Sbjct: 174 EALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTP--- 230
Query: 300 SDVLISFLPLAHML 313
V+++ LPL H+
Sbjct: 231 ESVVLAVLPLFHVT 244
>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.
Length = 573
Score = 71.6 bits (176), Expect = 1e-13
Identities = 73/273 (26%), Positives = 111/273 (40%), Gaps = 55/273 (20%)
Query: 130 GLLGLGVNPGSFVGIYSQNCPEWIIT-----EQGAYCYSMIIVALYDTL-------GPDA 177
GL LGV PG V I NCP+ I+ GA +V ++ L P
Sbjct: 73 GLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGA------VVVEHNPLYTAHELEHP-- 124
Query: 178 CAFIINQAEISVLIVDDD--SKCNQIIDRAPRCLKKIISIREVR-MATMQR--------- 225
F + A V IV D ++ P L+ I+S+ + M +QR
Sbjct: 125 --FEDHGAR--VAIVWDKVAPTVERLRRTTP--LETIVSVNMIAAMPLLQRLALRLPIPA 178
Query: 226 -ARSR------AIEIIRFDEIER--VGAQKMFEEVP-PKPTDLCTICYTSGTTGNPKGVM 275
++R A + ++ + +G P P P D+ I YTSGTTG PKG
Sbjct: 179 LRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQ 238
Query: 276 LTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERT-CESAMFLVGGSIGYY-SG 333
LTH N+ A + + + +++ LP+ H T C + +GG + +
Sbjct: 239 LTHRNLFANAAQGKAWVPGLGDG-PERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAP 297
Query: 334 DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMA 366
DI + + MK PT +P VP L Y+K+
Sbjct: 298 DIDLILDAMKKHPPTWLPGVPPL----YEKIAE 326
>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 347
Score = 70.2 bits (173), Expect = 2e-13
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 255 PTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHM 312
P D I YTSGTTG PKG MLTH NV+ + +L D + +PL H+
Sbjct: 1 PDDPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLTEG---DRTLVPVPLFHV 55
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid
CoA ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions. Members of this
family include DitJ from Pseudomonas and similar
proteins.
Length = 421
Score = 70.3 bits (173), Expect = 3e-13
Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Query: 256 TDLCTICYTSGTTGNPKGVMLTHGNVI--AAISAALLQLSDHRPKYSDVLISFLPLAHM- 312
D I YTSGTTG PKGV+LTH ++ A ++A LL L DVL++ LPL H+
Sbjct: 81 VDTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRP-----DDVLLTPLPLFHIN 135
Query: 313 -LERTCESAMFLVGGSI 328
+ A LVG ++
Sbjct: 136 AQAYSV-YAALLVGATL 151
Score = 45.3 bits (108), Expect = 4e-05
Identities = 21/77 (27%), Positives = 35/77 (45%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPD 176
Y + R +GLL LGV PG V + NCPE++ + V + L +
Sbjct: 6 YAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTALRGE 65
Query: 177 ACAFIINQAEISVLIVD 193
A I++ + +++VD
Sbjct: 66 ELAHILDHSGARLIVVD 82
>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated.
Length = 524
Score = 70.4 bits (173), Expect = 3e-13
Identities = 44/166 (26%), Positives = 68/166 (40%), Gaps = 29/166 (17%)
Query: 133 GLGVNPGSFVGIYSQNCPE-WIITEQGAYCYS-MIIVALYDTLGPDACAFIINQAEISVL 190
LG+ G V + S N PE + GA + + AL+ D A+++ A IS L
Sbjct: 56 ALGLGTGDAVALLSLNRPEVLMA--IGAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTL 113
Query: 191 IVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEE 250
IVD ++RA L ++ S++ V + + + + A +
Sbjct: 114 IVDP----APFVERALALLARVPSLKHV------------LTLGPVPDGVDLLAA--AAK 155
Query: 251 VPPKP-------TDLCTICYTSGTTGNPKGVMLTHGNVIAAISAAL 289
P P D+ + YT GTTG PKGVM TH ++ L
Sbjct: 156 FGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQL 201
>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and
4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase).
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A
ligase catalyze the first activating step for benzoate
and 4-hydroxybenzoate catabolic pathways, respectively.
Although these two enzymes share very high sequence
homology, they have their own substrate preference. The
reaction proceeds via a two-step process; the first
ATP-dependent step forms the substrate-AMP intermediate,
while the second step forms the acyl-CoA ester,
releasing the AMP. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Some bacteria can use benzoic acid
or benzenoid compounds as the sole source of carbon and
energy through degradation. Benzoate CoA ligase and
4-hydroxybenzoate-Coenzyme A ligase are key enzymes of
this process.
Length = 506
Score = 70.4 bits (173), Expect = 4e-13
Identities = 51/250 (20%), Positives = 92/250 (36%), Gaps = 22/250 (8%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPD 176
Y + +G+ L LG+ + V + + PE+ GA + V + L PD
Sbjct: 33 YGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTPD 92
Query: 177 ACAFIINQAEISVLIVDDD--SKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEII 234
+ +N + VL++ ++ + + P L+ +I + + A+ A
Sbjct: 93 DYRYYLNDSRARVLVISEELWEVLKPALQKDPH-LRHVIVVGGAGPGALSYAQLIA---- 147
Query: 235 RFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSD 294
A + E D+ Y+SG+TG PKGV+ H +++ A +
Sbjct: 148 --------TAAEELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTAEAYAKNVLG 199
Query: 295 HRPKYSDVLISF--LPLAHMLERTCESAMFLVGGSIGYYSGDIK--NLTEDMKTLKPTIM 350
DV+ S L A+ L + VG + + ++ KPT+
Sbjct: 200 ITE--DDVVFSAAKLFFAYGLGNGLYFPLS-VGATTVLMPERPTPDAVFATIERYKPTVF 256
Query: 351 PAVPRLLNRM 360
VP L M
Sbjct: 257 FGVPTLYAAM 266
>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase;
Provisional.
Length = 560
Score = 70.3 bits (172), Expect = 4e-13
Identities = 68/272 (25%), Positives = 116/272 (42%), Gaps = 31/272 (11%)
Query: 115 IHYNQALLRARNFGSGLLG-LGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTL 173
I Y +A F + LLG L + G V + NC ++ I G + +V +
Sbjct: 51 ITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVNPLY 110
Query: 174 GPDACAFIINQAEISVLIVDDD--SKCNQIIDRAPRCLKKIIS----------------- 214
P + + SVL+V D+ + Q+I P +K++I+
Sbjct: 111 TPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTP--VKQVITTGLGDMLGFPKAALVNF 168
Query: 215 -IREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKG 273
++ V+ + + AI RF E +G + + +P D+ + YT GTTG KG
Sbjct: 169 VVKYVKKLVPEYRINGAI---RFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKG 225
Query: 274 VMLTHGNVIAAISAA--LLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFL-VGGSIGY 330
MLTH N++A + A L + + +V+I+ LPL H+ T +F+ +GG
Sbjct: 226 AMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHL 285
Query: 331 YSG--DIKNLTEDMKTLKPTIMPAVPRLLNRM 360
S D+ +++K + T V L N +
Sbjct: 286 ISNPRDMPGFVKELKKTRFTAFTGVNTLFNGL 317
>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein
synthetase (also called 2-acylglycerophosphoethanolamine
acyltransferase, Aas). Acyl-acyl carrier protein
synthase (Aas) is a membrane protein responsible for a
minor pathway of incorporating exogenous fatty acids
into membrane phospholipids. Its in vitro activity is
characterized by the ligation of free fatty acids
between 8 and 18 carbons in length to the acyl carrier
protein sulfydryl group (ACP-SH) in the presence of ATP
and Mg2+. However, its in vivo function is as a
2-acylglycerophosphoethanolamine (2-acyl-GPE)
acyltransferase. The reaction occurs in two steps: the
acyl chain is first esterified to acyl carrier protein
(ACP) via a thioester bond, followed by a second step
where the acyl chain is transferred to a
2-acyllysophospholipid, thus completing the
transacylation reaction. This model represents the
C-terminal domain of the enzyme, which belongs to the
class I adenylate-forming enzyme family, including
acyl-CoA synthetases.
Length = 489
Score = 69.6 bits (171), Expect = 6e-13
Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 17/194 (8%)
Query: 172 TLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRAR---S 228
T G + QA I +I S+ +++ + ++ + VR+ ++ R S
Sbjct: 64 TAGEEGLRSACKQAGIKTVIT---SR--AFLEKL-KLEGLVVLLEGVRIVYLEDLRAKIS 117
Query: 229 RAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAA 288
+A ++ F + A KP D I +TSG+ G PKGV+L+H N++A I
Sbjct: 118 KADKLKAFLAAKLPPALLRLFLAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANI--- 174
Query: 289 LLQLSDH-RPKYSDVLISFLPLAHMLERT-CESAMFLVGGSIGYYSG--DIKNLTEDMKT 344
Q++ DVL+ LPL H T L G + YY D K + E ++
Sbjct: 175 -DQIAAVIDLNTEDVLLGALPLFHAFGLTVTLLLPLLTGLRVVYYPNPLDAKKIAELIRD 233
Query: 345 LKPTIMPAVPRLLN 358
K TI+ P L
Sbjct: 234 YKATILCGTPTFLR 247
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called
cyclohex-1-ene-1-carboxylate:CoA ligase).
Cyclohexanecarboxylate-CoA ligase activates the
aliphatic ring compound, cyclohexanecarboxylate, for
degradation. It catalyzes the synthesis of
cyclohexanecarboxylate-CoA thioesters in a two-step
reaction involving the formation of
cyclohexanecarboxylate-AMP anhydride, followed by the
nucleophilic substitution of AMP by CoA.
Length = 437
Score = 68.8 bits (169), Expect = 9e-13
Identities = 47/198 (23%), Positives = 66/198 (33%), Gaps = 57/198 (28%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPD 176
Y + A + L LGV PG V N E+++ +I +
Sbjct: 4 YGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYRER 63
Query: 177 ACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRF 236
FI+ QA VL V R F
Sbjct: 64 ELGFILRQARARVLFV------------------------------PDEFRG-------F 86
Query: 237 DEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAIS--AALLQLSD 294
D + +P D+ + YTSGTTG PKGVM TH ++A + L L+
Sbjct: 87 D----------YAAMP---DDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLTP 133
Query: 295 HRPKYSDVLISFLPLAHM 312
DV++ PLAH+
Sbjct: 134 -----DDVVLMPSPLAHI 146
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated.
Length = 632
Score = 69.2 bits (170), Expect = 1e-12
Identities = 63/249 (25%), Positives = 95/249 (38%), Gaps = 30/249 (12%)
Query: 134 LGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLI-- 191
LGV PG V N PE G I + L P+ A ++ A VL+
Sbjct: 78 LGVGPGDVVAFLLPNLPETHFALWGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTL 136
Query: 192 -----VDDDSKCNQIIDRAPRCLKKIISI-------REVRMATMQRARSRAIEIIRFD-E 238
D K +++ P L+ ++ + R+A R I+ FD E
Sbjct: 137 GPFPGTDIWQKVAEVLAALPE-LRTVVEVDLARYLPGPKRLAVPLIRRKAHARILDFDAE 195
Query: 239 IERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIA-AISAALLQLSDHRP 297
+ R ++F P P D+ +T GTTG PK THGN +A A ALL
Sbjct: 196 LARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGP-- 253
Query: 298 KYSDVLISFLPLAHM--LERTCESAMF-----LVGGSIGYYS-GDIKNLTEDMKTLKPTI 349
D + LPL H+ L T + + ++ GY G I N + ++ +
Sbjct: 254 --GDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINF 311
Query: 350 MPAVPRLLN 358
+ VP +
Sbjct: 312 LSGVPTVYA 320
>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated.
Length = 504
Score = 66.8 bits (164), Expect = 5e-12
Identities = 30/64 (46%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 248 FEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFL 307
FE VP DL I YTSGTTG KG ML+HGN + + + L+ P DVLI L
Sbjct: 148 FETVPRGADDLAAILYTSGTTGRSKGAMLSHGN-LLSNALTLVDYWRFTPD--DVLIHAL 204
Query: 308 PLAH 311
P+ H
Sbjct: 205 PIFH 208
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar
proteins. Bile acid-Coenzyme A ligase catalyzes the
formation of bile acid-CoA conjugates in a two-step
reaction: the formation of a bile acid-AMP molecule as
an intermediate, followed by the formation of a bile
acid-CoA. This ligase requires a bile acid with a free
carboxyl group, ATP, Mg2+, and CoA for synthesis of the
final bile acid-CoA conjugate. The bile acid-CoA
ligation is believed to be the initial step in the bile
acid 7alpha-dehydroxylation pathway in the intestinal
bacterium Eubacterium sp.
Length = 342
Score = 65.6 bits (161), Expect = 7e-12
Identities = 26/55 (47%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 257 DLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAH 311
D I YTSGTTG PKGVMLTH N++A AL + DV + PL H
Sbjct: 2 DPALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSP---GDVYLLAAPLYH 53
>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional.
Length = 542
Score = 65.9 bits (161), Expect = 1e-11
Identities = 62/223 (27%), Positives = 91/223 (40%), Gaps = 29/223 (13%)
Query: 103 GWRQNISR----PYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQG 158
G R+ ++R P Y Q RA L G+ G V + N + G
Sbjct: 24 GNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYG 83
Query: 159 AYCYSMIIVALYDTLGP----DACAFIINQAEISVLIVDDD--SKCNQIIDRAPRCLKKI 212
M I A+ T+ P + A+IIN AE V+I D +I D+ P + +
Sbjct: 84 I----MGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYV 139
Query: 213 ISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPK 272
+ M + A E E + A K F+E +CYTSGTTG+PK
Sbjct: 140 VLTDAAHMPQTTLKNAVAYEEW-IAEADGDFAWKTFDE-----NTAAGMCYTSGTTGDPK 193
Query: 273 GVMLTH-GNVIAAISAAL---LQLSDHRPKYSDVLISFLPLAH 311
GV+ +H NV+ A+ A L S +D ++ +PL H
Sbjct: 194 GVLYSHRSNVLHALMANNGDALGTSA-----ADTMLPVVPLFH 231
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS). MCS catalyzes the
formation of malonyl-CoA in a two-step reaction
consisting of the adenylation of malonate with ATP,
followed by malonyl transfer from malonyl-AMP to CoA.
Malonic acid and its derivatives are the building blocks
of polyketides and malonyl-CoA serves as the substrate
of polyketide synthases. Malonyl-CoA synthetase has
broad substrate tolerance and can activate a variety of
malonyl acid derivatives. MCS may play an important role
in biosynthesis of polyketides, the important secondary
metabolites with therapeutic and agrochemical utility.
Length = 430
Score = 65.3 bits (160), Expect = 1e-11
Identities = 30/55 (54%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
Query: 257 DLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAH 311
D I YTSGTTG PKGV+LTHGN +AA + AL++ SDVL+ LPL H
Sbjct: 89 DPALIIYTSGTTGRPKGVVLTHGN-LAANARALVEAWRWTA--SDVLLHALPLHH 140
Score = 41.1 bits (97), Expect = 7e-04
Identities = 16/84 (19%), Positives = 37/84 (44%)
Query: 108 ISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIV 167
+ + + Y + R+ LL LG+ PG V + + E+++ + + V
Sbjct: 5 LVDGGRSLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAV 64
Query: 168 ALYDTLGPDACAFIINQAEISVLI 191
L + A+I++ ++ S+L+
Sbjct: 65 PLNPSYPAAELAYILSDSQPSLLV 88
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 483
Score = 65.4 bits (160), Expect = 1e-11
Identities = 63/243 (25%), Positives = 103/243 (42%), Gaps = 56/243 (23%)
Query: 131 LLGLGVNPGSFVGIYSQNCPEWIIT-----EQGAYCYSMIIVALYDTLGPDACAFIINQA 185
L LGV G V + +N E I+ + GA + V L L + + ++ A
Sbjct: 44 LAALGVKKGDRVALLMKNGMEMILVIHALQQLGA-----VAVLLNTRLSREELLWQLDDA 98
Query: 186 EISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQ 245
E+ LI DDD + K+I V+ A + EI Q
Sbjct: 99 EVKCLITDDDFE------------AKLIPGISVKFAELMNGPKEEAEI-----------Q 135
Query: 246 KMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIA-AISAAL-LQLSDHRPKYSDVL 303
+ F+ ++ TI YTSGTTG PKGV+ T+GN A+ +AL L L++ D
Sbjct: 136 EEFDL-----DEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTED-----DCW 185
Query: 304 ISFLPLAHM--LERTCESAMF---LVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLL 357
++ +P+ H+ L S + + G + D + + + ++T TI+ V +L
Sbjct: 186 LAAVPIFHISGL-----SILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTML 240
Query: 358 NRM 360
R+
Sbjct: 241 QRL 243
>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 350
Score = 64.6 bits (158), Expect = 2e-11
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 257 DLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERT 316
DL I YTSG+TG PKGVML+H N+ A + ++ Q + D +++ LP + +
Sbjct: 3 DLAAIIYTSGSTGEPKGVMLSHRNLTAG-ARSIAQYLELTED--DRILAVLPFSFDYGLS 59
Query: 317 CESAMFLVGGSIGYYSGDI--KNLTEDMKTLKPTIMPAVP 354
F VGG++ S +++ + + + T VP
Sbjct: 60 QLLTAFRVGGTLVLESRFAFPRDVLKHLAKERITGFAGVP 99
>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated.
Length = 496
Score = 64.1 bits (156), Expect = 4e-11
Identities = 47/181 (25%), Positives = 70/181 (38%), Gaps = 28/181 (15%)
Query: 134 LGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVD 193
L V G + I SQN E+I+ I V L L + F + + +VL V+
Sbjct: 48 LNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVE 107
Query: 194 DDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPP 253
+ MA + S +I ++ + +K+ V
Sbjct: 108 KTFQN---------------------MALSMQKVSYVQRVISITSLKEIEDRKIDNFVEK 146
Query: 254 KPTDLCTICYTSGTTGNPKGVMLTHGNVI--AAISAALLQLSDHRPKYSDVLISFLPLAH 311
+ ICYTSGTTG PKG +LT N+ A + + L+ H D I LPL H
Sbjct: 147 NESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMH-----DRSIVLLPLFH 201
Query: 312 M 312
+
Sbjct: 202 I 202
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated.
Length = 562
Score = 64.0 bits (156), Expect = 5e-11
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 234 IRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLS 293
++F++ GA + E P+ D+ + YT GTTG KG MLTH N++A + +
Sbjct: 185 VKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMG 244
Query: 294 DHRPKYSDVLISFLPLAHMLERT--CESAMFLVGG 326
+ + ++LI+ LPL H+ T C AM L+G
Sbjct: 245 SNLNEGCEILIAPLPLYHIYAFTFHC-MAMMLIGN 278
>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated.
Length = 545
Score = 63.8 bits (156), Expect = 5e-11
Identities = 53/195 (27%), Positives = 74/195 (37%), Gaps = 18/195 (9%)
Query: 123 RARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFII 182
R R S L G+ G V + N P + G ++ L L + AF++
Sbjct: 52 RCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNTRLDAASIAFML 111
Query: 183 NQAEISVLIVDDDSKCNQIIDRAPRCLK--KIISIREVRMATMQRARSRAIEIIRFDEIE 240
E VLIVD ++ ++ A L K + I +V I + E
Sbjct: 112 RHGEAKVLIVD--TEFAEVAREALALLPGPKPLVI-DVDDPEYPGG-----RFIGALDYE 163
Query: 241 RVGAQ--KMFEEVPPKPT-DLCTICYTSGTTGNPKGVMLTH-GNVIAAISAALLQLSDHR 296
A F P D + YTSGTTGNPKGV+ H G + A+S L
Sbjct: 164 AFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKH 223
Query: 297 PKYSDVLISFLPLAH 311
P Y + LP+ H
Sbjct: 224 PVY----LWTLPMFH 234
>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated.
Length = 557
Score = 62.7 bits (153), Expect = 1e-10
Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 7/134 (5%)
Query: 234 IRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAI--SAALLQ 291
+RF++ GA++ F+ V P D+ + YT GTTG KG L H N++A + A LQ
Sbjct: 182 VRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQ 241
Query: 292 LSDHRPKYSDVLISF--LPLAHMLERTCESAMFLVGGSIGYY---SGDIKNLTEDMKTLK 346
+ + D L LPL H+ T + + G DI +++K +
Sbjct: 242 PAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQ 301
Query: 347 PTIMPAVPRLLNRM 360
I PAV L N +
Sbjct: 302 VHIFPAVNTLYNAL 315
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as
O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or
MenE). O-succinylbenzoic acid-CoA synthase catalyzes
the coenzyme A (CoA)- and ATP-dependent conversion of
o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The
reaction is the fourth step of the biosynthesis pathway
of menaquinone (vitamin K2). In certain bacteria,
menaquinone is used during fumarate reduction in
anaerobic respiration. In cyanobacteria, the product of
the menaquinone pathway is phylloquinone
(2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used
exclusively as an electron transfer cofactor in
Photosystem 1. In green sulfur bacteria and
heliobacteria, menaquinones are used as loosely bound
secondary electron acceptors in the photosynthetic
reaction center.
Length = 407
Score = 61.8 bits (151), Expect = 1e-10
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 20/137 (14%)
Query: 245 QKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIA-AI-SAALLQLSDHRPKYSDV 302
Q+ ++ P TI +TSG+TG PK V+ T GN +A A SA L L+ D
Sbjct: 66 QQQLADLQPDLDRPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENLGLTP-----DDN 120
Query: 303 -LISFLPLAHM-----LERTCESAMFLVGGSIGYYS-GDIKNLTEDMKTLKPTIMPAVPR 355
L+S LPL H+ + R+ L GG++ D + + E ++ T + VP
Sbjct: 121 WLLS-LPLFHVSGLAIVMRS-----LLAGGALVLPDKFDAEAIAEALENHGVTHISLVPT 174
Query: 356 LLNRMYDKVMAQIRPSF 372
L R+ + + A+ S
Sbjct: 175 QLQRLLESLGARWLSSL 191
>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated.
Length = 539
Score = 62.4 bits (152), Expect = 1e-10
Identities = 59/212 (27%), Positives = 96/212 (45%), Gaps = 33/212 (15%)
Query: 115 IH---YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWI-----ITEQGAYCYSMII 166
IH Y RA+ L LGV PG VG + N + ++ GA C++
Sbjct: 37 IHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHT--- 93
Query: 167 VALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDR-APRCLKKIISIRE-VRMATMQ 224
+ L P+ A+I+N AE ++ D ++D AP+C +++ V M
Sbjct: 94 --INPRLFPEQIAYIVNHAEDRYVLFD--LTFLPLVDALAPQC----PNVKGWVAMTDAA 145
Query: 225 RARSRAIEIIRFDEIERVGAQKMFEEVPP-KPTDLCTICYTSGTTGNPKGVMLTH-GNVI 282
+ + ++ ++ + VGAQ + P ++CYTSGTTGNPKG + +H V+
Sbjct: 146 HLPAGSTPLLCYETL--VGAQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVL 203
Query: 283 AAISAAL---LQLSDHRPKYSDVLISFLPLAH 311
A AAL + LS D ++ +P+ H
Sbjct: 204 HAYGAALPDAMGLSA-----RDAVLPVVPMFH 230
>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of
siderophore-synthesizing nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family of
siderophore-synthesizing NRPS includes the third
adenylation domain of SidN from the endophytic fungus
Neotyphodium lolii, ferrichrome siderophore synthetase,
HC-toxin synthetase, and enniatin synthase. NRPSs are
large multifunctional enzymes which synthesize many
therapeutically useful peptides. These natural products
include antibiotics, immunosuppressants, plant and
animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions.
Length = 447
Score = 61.9 bits (151), Expect = 2e-10
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 17/115 (14%)
Query: 254 KPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLA--- 310
P D + YTSG+TG PKGV++TH N+ + A L RP D ++ F +A
Sbjct: 97 SPDDPAYVIYTSGSTGKPKGVVITHRNICNFLRAEGAIL-GIRP--GDRVLQFASIAFDV 153
Query: 311 HMLERTCESAMF---LVGGSIGYYSGDIK--NLTEDMKTLKPTIMPAVPRLLNRM 360
+LE +F L GG++ +++ +L E + L+ T+ P LL +
Sbjct: 154 SILE------IFTTLLAGGTLVIPPEELRLEDLAEFLNRLRVTVAHLTPSLLALL 202
>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA. PimA, a member of
a large family of acyl-CoA ligases, is found in a
characteristic operon pimFABCDE for the metabolism of
pimelate and related compounds. It is found, so far, in
Bradyrhizobium japonicum and several strains of
Rhodopseudomonas palustris. PimA from R. palustris was
shown to be active as a CoA ligase for C(7) to C(14)
dicarboxylates and fatty acids.
Length = 541
Score = 61.5 bits (149), Expect = 3e-10
Identities = 75/285 (26%), Positives = 118/285 (41%), Gaps = 22/285 (7%)
Query: 84 TLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVG 143
TL D K A + L +R RP I Y + A + LL G + V
Sbjct: 22 TLPDLLSKAAADYGPRPALEFRD---RP---ITYTELEAMAETAAAALLRAGYGKDASVA 75
Query: 144 IYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIID 203
+Y N P+ I GA +V L G A + ++ + +LI D + ++
Sbjct: 76 LYLGNTPDHPINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAA---LLP 132
Query: 204 RAPRCLKKIISIREV--------RMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKP 255
A + L+K + R + ++ T Q I+ + + + GA E P
Sbjct: 133 MALKFLEKGLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFVK-GAAAPAEWPAVTP 191
Query: 256 TDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDV--LISFLPLAHML 313
D+ + YT GTTG PKG MLTHGN+ +A+S + R DV +I LPL H+
Sbjct: 192 DDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVICVLPLFHIY 251
Query: 314 ERTCESAMFLVGGSI--GYYSGDIKNLTEDMKTLKPTIMPAVPRL 356
T L G + + D+ + D++ + T+ P VP +
Sbjct: 252 ALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTM 296
>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily
similar to Acetoacetyl-CoA synthetase. This
uncharacterized acyl-CoA synthetase family is highly
homologous to acetoacetyl-CoA synthetase. However, the
proteins in this family exist in only bacteria and
archaea. AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms.
Length = 474
Score = 61.1 bits (149), Expect = 3e-10
Identities = 44/181 (24%), Positives = 61/181 (33%), Gaps = 49/181 (27%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPD 176
Y++ SGL LG+ G VGIY PE ++ I V ++ GPD
Sbjct: 10 YSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIFSGFGPD 69
Query: 177 ACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRF 236
A A + AE VLI D +R R + +++
Sbjct: 70 AVATRLQDAEAKVLITAD------------------GFLR----------RGKRVDL--- 98
Query: 237 DEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHR 296
D I YTSGTTG PKG + TH + + D +
Sbjct: 99 ------------------KDDPAMIIYTSGTTGKPKGTVHTHAGFPVKAAKDIGFCFDLK 140
Query: 297 P 297
P
Sbjct: 141 P 141
>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Bacillus subtilis
termination module Surfactin (SrfA-C). The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions. This family includes the
adenylation domain of the Bacillus subtilis termination
module (Surfactin domain, SrfA-C) which recognizes a
specific amino acid building block, which is then
activated and transferred to the terminal thiol of the
4'-phosphopantetheine (Ppan) arm of the downstream
peptidyl carrier protein (PCP) domain.
Length = 474
Score = 61.0 bits (149), Expect = 4e-10
Identities = 36/170 (21%), Positives = 55/170 (32%), Gaps = 35/170 (20%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGA----YCYSMIIVALYDT 172
Y + RA L GV PG V + + PE ++ Y V L
Sbjct: 15 YAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAY----VPLDPA 70
Query: 173 LGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIE 232
+ AF++ + VL+ D+ L + ++ +
Sbjct: 71 YPAERLAFMLEDSGARVLLTDES-------------LAPLARADQLPLVI---------- 107
Query: 233 IIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVI 282
E E DL + YTSG+TG PKGV + H V+
Sbjct: 108 ----LEEELDAEDAGPPAPAVDADDLAYVMYTSGSTGRPKGVAVPHRGVV 153
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a
family of nonribosomal peptide synthetases (NRPSs)
synthesizing toxins and antitumor agents. The
adenylation (A) domain of NRPS recognizes a specific
amino acid or hydroxy acid and activates it as an
(amino)-acyl adenylate by hydrolysis of ATP. The
activated acyl moiety then forms a thioester to the
enzyme-bound cofactor phosphopantetheine of a peptidyl
carrier protein domain. This family includes NRPSs that
synthesize toxins and antitumor agents; for example,
TubE for Tubulysine, CrpA for cryptophycin, TdiA for
terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for
Valinomycin. Nonribosomal peptide synthetases are large
multifunctional enzymes which synthesize many
therapeutically useful peptides. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and, in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 560
Score = 60.8 bits (148), Expect = 5e-10
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 200 QIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLC 259
+++ P L + + RA A+ ++ +E+ P +P D
Sbjct: 115 ELLGS-PVILTDAALVAALA-GLRTRAGLEALRVLAIEELRSAPPDAPL--HPARPDDPA 170
Query: 260 TICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAH 311
+ TSG+TG PK V+LTH N++A SA +Q++ P DV ++++PL H
Sbjct: 171 LLLLTSGSTGVPKCVVLTHRNILAR-SAGTVQVNGFTPD--DVSLNWMPLDH 219
>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain. This
model represents a domain responsible for the specific
recognition of amino acids and activation as adenylyl
amino acids. The reaction catalyzed is aa + ATP ->
aa-AMP + PPi. These domains are usually found as
components of multi-domain non-ribosomal peptide
synthetases and are usually called "A-domains" in that
context (for a review, see ). A-domains are almost
invariably followed by "T-domains" (thiolation domains,
pfam00550) to which the amino acid adenylate is
transferred as a thiol-ester to a bound pantetheine
cofactor with the release of AMP (these are also called
peptide carrier proteins, or PCPs. When the A-domain
does not represent the first module (corresponding to
the first amino acid in the product molecule) it is
usually preceded by a "C-domain" (condensation domain,
pfam00668) which catalyzes the ligation of two amino
acid thiol-esters from neighboring modules. This domain
is a subset of the AMP-binding domain found in Pfam
(pfam00501) which also hits substrate--CoA ligases and
luciferases. Sequences scoring in between trusted and
noise for this model may be ambiguous as to whether they
activate amino acids or other molecules lacking an alpha
amino group.
Length = 409
Score = 60.0 bits (146), Expect = 6e-10
Identities = 45/197 (22%), Positives = 69/197 (35%), Gaps = 40/197 (20%)
Query: 123 RARNFGSGLLGL-GVNPGSFVGIYSQNCPEWIIT------EQGAYCYSMIIVALYDTLGP 175
RA L GV PG V + + E ++ AY V L D P
Sbjct: 8 RANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAY------VPL-DPAYP 60
Query: 176 DA-CAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEII 234
AFI+ A +L+ D + R + +I +
Sbjct: 61 AERLAFILEDAGARLLLTDS-----ALASRLAGLVLPVILLD-----------------P 98
Query: 235 RFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSD 294
+ P P DL + YTSG+TG PKGV++TH +++ + A L +
Sbjct: 99 LELAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLL-AWLARRYG 157
Query: 295 HRPKYSDVLISFLPLAH 311
P D ++ F L+
Sbjct: 158 LDP--DDRVLQFASLSF 172
>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS) similar to mycosubtilin
synthase subunit A (MycA). The adenylation (A) domain
of NRPS recognizes a specific amino acid or hydroxy acid
and activates it as (amino)-acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family includes
NRPS similar to mycosubtilin synthase subunit A (MycA).
Mycosubtilin, which is characterized by a beta-amino
fatty acid moiety linked to the circular heptapeptide
Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin
family of lipopeptide antibiotics. The mycosubtilin
synthase subunit A (MycA) combines functional domains
derived from peptide synthetases, amino transferases,
and fatty acid synthases. Nonribosomal peptide
synthetases are large multifunction enzymes that
synthesize many therapeutically useful peptides. NRPS
has a distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions.
Length = 499
Score = 60.0 bits (146), Expect = 8e-10
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 7/59 (11%)
Query: 255 PTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAAL--LQLSDHRPKYSDVLISFLPLAH 311
P D+ I ++SG+TG PKGV+LTH N++ I A + +++ DV +S++PL H
Sbjct: 105 PDDIAFIQFSSGSTGEPKGVILTHKNLLTNIEAIIEAAEITS-----EDVFLSWMPLTH 158
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 59.9 bits (146), Expect = 1e-09
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 252 PPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSD-HRPKYSDVLISFLPLA 310
KP D TI ++SG+ G PKGVML+H N+++ I Q+SD + DV++S LP
Sbjct: 778 TFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIE----QISDVFNLRNDDVILSSLPFF 833
Query: 311 H 311
H
Sbjct: 834 H 834
>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase.
Length = 537
Score = 59.6 bits (145), Expect = 1e-09
Identities = 59/216 (27%), Positives = 83/216 (38%), Gaps = 54/216 (25%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGP- 175
Y L +R +GL LG+ G V + NCPE+++ GA S A+ T P
Sbjct: 53 YADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGA---SRR-GAVTTTANPF 108
Query: 176 ------------DACAFIINQA----EISVLIVDDDSKCNQIIDRAPRCLKKIISIREVR 219
II Q+ ++ L DD I D CL E+
Sbjct: 109 YTPAEIAKQAKASGAKLIITQSCYVDKLKGLAEDDGVTVVTIDDPPEGCL----HFSELT 164
Query: 220 MATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHG 279
A DE E EV P D+ + Y+SGTTG PKGVMLTH
Sbjct: 165 QA---------------DENE-------LPEVEISPDDVVALPYSSGTTGLPKGVMLTHK 202
Query: 280 NVIAAISAALLQLSDHRP----KYSDVLISFLPLAH 311
++ +++ Q+ P DV++ LP+ H
Sbjct: 203 GLVTSVAQ---QVDGENPNLYFHSDDVILCVLPMFH 235
>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related
proteins [Secondary metabolites biosynthesis, transport,
and catabolism].
Length = 642
Score = 59.2 bits (143), Expect = 2e-09
Identities = 36/177 (20%), Positives = 57/177 (32%), Gaps = 38/177 (21%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWI-----ITEQGAYCYSMIIVALYD 171
Y + RA L+ LGV PG V I + E + + + GA Y V L
Sbjct: 255 YAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGA-AY----VPLDP 309
Query: 172 TLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAI 231
+ A+I+ + ++L+ R +
Sbjct: 310 LYPAERLAYILEDSRPTLLLTQAHL----------------------------RVDDVGL 341
Query: 232 EIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAA 288
+ D+ L I YTSG+TG PKGV + H + ++ A
Sbjct: 342 PGLALDDALSEIPDTDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDA 398
>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Streptoalloteichus
tallysomycin biosynthesis genes. The adenylation (A)
domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the TLM biosynthetic
gene cluster from Streptoalloteichus that consists of
nine NRPS genes; the N-terminal module of TlmVI (NRPS-5)
and the starter module of BlmVI (NRPS-5) are comprised
of the acyl CoA ligase (AL) and acyl carrier protein
(ACP)-like domains, which are thought to be involved in
the biosynthesis of the beta-aminoalaninamide moiety.
Length = 476
Score = 58.4 bits (142), Expect = 3e-09
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 3/80 (3%)
Query: 209 LKKIISIREVRMATMQRARSRAIE---IIRFDEIERVGAQKMFEEVPPKPTDLCTICYTS 265
I++ R ++ E ++ + P DL + +TS
Sbjct: 76 RAAILARAGARAVLTDPGLAQPEEAPDLLVVADDAAAAESPAPPPPRVDPDDLAYVIFTS 135
Query: 266 GTTGNPKGVMLTHGNVIAAI 285
G+TG PKGVM+TH + I
Sbjct: 136 GSTGEPKGVMITHRAAVNTI 155
>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated.
Length = 533
Score = 58.4 bits (142), Expect = 3e-09
Identities = 39/173 (22%), Positives = 74/173 (42%), Gaps = 35/173 (20%)
Query: 123 RARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGA-----------YCYSMIIVALYD 171
RA L+ G+ PG VGIY++N E++ GA Y Y
Sbjct: 37 RANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYV-------- 88
Query: 172 TLGPDACAFIINQAEISVLIVDD--DSKCNQIIDRAPRCLKKIISIREVRMATMQRARSR 229
D ++++ ++ L+ + + +++ R P+ L+ ++ + + +
Sbjct: 89 ---EDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPK-LRTLVVVED---GSGNDLLPG 141
Query: 230 AIEIIRFDEIERVG-AQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNV 281
A++ +++ G ++ F E P DL + YT GTTG PKGVM ++
Sbjct: 142 AVD---YEDALAAGSPERDFGE--RSPDDLYLL-YTGGTTGMPKGVMWRQEDI 188
>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional.
Length = 570
Score = 58.4 bits (142), Expect = 3e-09
Identities = 40/168 (23%), Positives = 62/168 (36%), Gaps = 12/168 (7%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPD 176
Y + + F + L LGV G V I+ PE GA I+ L++ +
Sbjct: 76 YKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEAFMEE 135
Query: 177 ACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIE-IIR 235
A + +E VLI + D P LK ++ + E +
Sbjct: 136 AVRDRLEDSEAKVLITTPALLERKPADDLP-SLKHVLLVGED---------VEEGPGTLD 185
Query: 236 FDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIA 283
F+ A F+ D + YTSG+TG PKGV+ H ++
Sbjct: 186 FNA-LMEQASDEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQ 232
>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 562
Score = 57.9 bits (140), Expect = 3e-09
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 234 IRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLS 293
+ F + R G + VP D+ + YT GTTG KG MLTHGN++A + LS
Sbjct: 185 VPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLS 244
Query: 294 DHRP-------KYSDVLISFLPLAHMLERTCESAMFLVGGS 327
P + +V+I+ LPL H+ T +V G+
Sbjct: 245 QLGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGN 285
>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional.
Length = 552
Score = 56.8 bits (138), Expect = 8e-09
Identities = 22/51 (43%), Positives = 27/51 (52%)
Query: 237 DEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISA 287
+ R GA F P D+ I +TSG+TG PKGV+ THG A I A
Sbjct: 155 ATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEA 205
>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated.
Length = 600
Score = 56.8 bits (138), Expect = 9e-09
Identities = 52/223 (23%), Positives = 84/223 (37%), Gaps = 25/223 (11%)
Query: 115 IHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWI-----ITEQGAYCYSMIIVAL 169
I Y + RA + GV G V + +N PE++ + + GA +VAL
Sbjct: 63 ISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGA------VVAL 116
Query: 170 YDT-LGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARS 228
+T A +N + LIV ++ + + A L + + T+
Sbjct: 117 LNTQQRGAVLAHSLNLVDAKHLIVGEE--LVEAFEEARADLARPPRLWVAGGDTLD-DPE 173
Query: 229 RAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAIS-- 286
++ V K D YTSGTTG PK +++H + A+
Sbjct: 174 GYEDLAAAAAGAPTTNPASRSGVTAK--DTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGF 231
Query: 287 AALLQLSDHRPKYSDVLISFLPLAHMLERT-CESAMFLVGGSI 328
LL+L+ DVL LPL H T S++ G ++
Sbjct: 232 GGLLRLTPD-----DVLYCCLPLYHNTGGTVAWSSVLAAGATL 269
>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS). Feruloyl-CoA
synthetase is an essential enzyme in the feruloyl acid
degradation pathway and enables some proteobacteria to
grow on media containing feruloyl acid as the sole
carbon source. It catalyzes the transfer of CoA to the
carboxyl group of ferulic acid, which then forms
feruloyl-CoA in the presence of ATP and Mg2. The
resulting feruloyl-CoA is further degraded to vanillin
and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a
subfamily of the adenylate-forming enzymes superfamily.
Length = 559
Score = 56.5 bits (137), Expect = 1e-08
Identities = 70/342 (20%), Positives = 113/342 (33%), Gaps = 112/342 (32%)
Query: 87 DAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYS 146
D + WR+ + Y +AL + R LL LG++ + I S
Sbjct: 10 DRVFLAERRGGGE----WRR--------VTYAEALRQVRAIAQALLDLGLSAERPLMILS 57
Query: 147 QNCPEWIITEQGA------YC-----YSMI------IVALYDTLGP------DACAFIIN 183
N E + A YS++ + ++D L P D AF
Sbjct: 58 GNSIEHALLALAAMYAGVPVAPVSPAYSLLSKDFAKLRHIFDLLTPGAVFAEDGAAF--- 114
Query: 184 QAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVG 243
++ L + + R A + + A++ VG
Sbjct: 115 ARALAALGLAGVP---VVAVRGA-----PGGPAIAFAALLATPPTAAVD----AAFAAVG 162
Query: 244 AQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQ----LSDHRPKY 299
P + +TSG+TG PK V+ TH + A A + Q L++ P
Sbjct: 163 -----------PDTVAKYLFTSGSTGLPKAVINTHRM-LCANQAMIAQCWPFLTEEPP-- 208
Query: 300 SDVLISFLPLAH----------MLERTCESAMFLVGGSIGYYSGD-----------IKNL 338
VL+ +LP H +L GG+ Y D ++NL
Sbjct: 209 --VLVDWLPWNHTFGGNHNFNMVLYN---------GGT--LYIDDGKPVPGLFEETLRNL 255
Query: 339 TEDMKTLKPTIMPAVPR----LLNRMYDKVMAQIRPSFIKRL 376
E + PT+ VP+ L++ + A +R F KRL
Sbjct: 256 RE----VSPTVYFNVPKGFEMLVDALERD--AALRRRFFKRL 291
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
bond to the enzyme-bound cofactor phosphopantetheine of
a peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 445
Score = 55.9 bits (136), Expect = 1e-08
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 240 ERVGAQKMFEEVPPK-----PTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAA 288
ER+ M E+ K P DL + YTSG+TG PKGVM+ H ++ ++
Sbjct: 74 ERL--AYMLEDSGAKLLLTDPDDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAWL 125
Score = 29.7 bits (68), Expect = 3.2
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 131 LLGLGVNPGSFVGIYSQNCPEWII 154
L GV PG V I + PE ++
Sbjct: 29 LRARGVGPGDLVAICLERSPEMVV 52
>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated.
Length = 567
Score = 55.8 bits (135), Expect = 2e-08
Identities = 51/208 (24%), Positives = 78/208 (37%), Gaps = 43/208 (20%)
Query: 127 FGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAF----II 182
F + L GV G V ++ NCP++ I G + + A++ + P +
Sbjct: 71 FAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGI----LKLGAVHVPVSPLFREHELSYEL 126
Query: 183 NQAEISVLIVDDDSKCNQIID-----RAPRCLKKII--SIREVRMAT-------MQRARS 228
N A VL+ D Q+ RA L+ +I S+ +V A RA
Sbjct: 127 NDAGAEVLLALD-----QLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPR 181
Query: 229 RA----IEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVI-- 282
A I+++ PP L + YT GTTG PKG T +++
Sbjct: 182 LAAAGAIDLLPALRACTAPVP----LPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYT 237
Query: 283 -AAISAALLQLSDHRPKYSDVLISFLPL 309
AA A + + V +SFLP
Sbjct: 238 AAAAYAVAVVGGED-----SVFLSFLPE 260
>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated.
Length = 563
Score = 55.8 bits (134), Expect = 2e-08
Identities = 61/255 (23%), Positives = 106/255 (41%), Gaps = 26/255 (10%)
Query: 123 RARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFII 182
+ + F + L LGV G V I NCP+ +I G I+V + +
Sbjct: 58 KVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTERELEYQL 117
Query: 183 NQAEISVLI-----------VDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAI 231
+ + V++ V +K +I R + + + +Q+ +S +
Sbjct: 118 HDSGAKVILCLDLVFPRVTNVQSATKIEHVI--VTRIADFLPFPKNLLYPFVQKKQSNLV 175
Query: 232 EIIRFDEIERVGAQKMFE-------EVPPKP-TDLCTICYTSGTTGNPKGVMLTHGNVIA 283
++ E E + E EVP P DL + YT GTTG PKGVMLTH N+++
Sbjct: 176 --VKVSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVS 233
Query: 284 AISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGG--SIGYYSGDIKNLTED 341
+ L + + + +V++ LP H+ T + ++ G + D+K + E
Sbjct: 234 NTLMGVQWLYNCK-EGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEA 292
Query: 342 MKTLKPTIMPAVPRL 356
+K K T+ P P +
Sbjct: 293 IKKHKVTLFPGAPTI 307
>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase.
2,3-dihydroxybenzoate-AMP ligase activates
2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP
with the release of pyrophosphate. However, it can also
catalyze the ATP-PPi exchange for 2,3-DHB analogs, such
as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB
and 2,5-DHB, but with less efficiency. Proteins in this
family are the stand-alone adenylation components of
non-ribosomal peptide synthases (NRPSs) involved in the
biosynthesis of siderophores, which are low molecular
weight iron-chelating compounds synthesized by many
bacteria to aid in the acquisition of this vital trace
elements. In Escherichia coli, the
2,3-dihydroxybenzoate-AMP ligase is called EntE, the
adenylation component of the enterobactin NRPS system.
Length = 483
Score = 54.9 bits (133), Expect = 3e-08
Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 9/103 (8%)
Query: 228 SRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAI-- 285
S A I D + E+ + D+ + GTTG PK + TH + + +
Sbjct: 111 SEAKAYIIADRFSGFDYAALARELLEELPDVALFQLSGGTTGLPKLIPRTHNDYLYSARA 170
Query: 286 SAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAM--FLVGG 326
SA L V ++ LP AH + + L GG
Sbjct: 171 SAEACGLDPG-----TVYLAVLPAAHNFTLSSPGLLGALLAGG 208
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase. This model
represents an enzyme, O-succinylbenzoate-CoA ligase,
which is involved in the fourth step of the menaquinone
biosynthesis pathway. O-succinylbenzoate-CoA ligase,
together with menB - naphtoate synthase, take
2-succinylbenzoate and convert it into 1,4-di-hydroxy-2-
naphtoate [Biosynthesis of cofactors, prosthetic groups,
and carriers, Menaquinone and ubiquinone].
Length = 436
Score = 54.8 bits (132), Expect = 4e-08
Identities = 50/235 (21%), Positives = 80/235 (34%), Gaps = 46/235 (19%)
Query: 135 GVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDD 194
G+ GS V + QN E ++ I L L + + ++ +L+ D
Sbjct: 20 GIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDS 79
Query: 195 DSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPK 254
L++ + + D IE G +
Sbjct: 80 -------------LLEE-----------------KDFQADSLDRIEAAGRYETSLSASFN 109
Query: 255 PTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAH--- 311
+ T+ +TSGTTG PK V T N A+ + L D + LPL H
Sbjct: 110 MDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTE---DDNWLLSLPLYHISG 166
Query: 312 --MLERTCESAMFLVGGSIGYYSGDIKN-LTEDMKTLKPTIMPAVPRLLNRMYDK 363
+L R + G ++ D N L E + + T + VP LNR+ D+
Sbjct: 167 LSILFRW-----LIEGATL--RIVDKFNQLLEMIANERVTHISLVPTQLNRLLDE 214
>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional.
Length = 624
Score = 54.7 bits (132), Expect = 4e-08
Identities = 74/341 (21%), Positives = 115/341 (33%), Gaps = 75/341 (21%)
Query: 83 KTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFV 142
+++ K A E+ + L R+ ++ + Y +A LL LG++PG V
Sbjct: 49 RSIPHLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPV 108
Query: 143 GIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISV---LIVDDDSKCN 199
I S N E + A G + A +S L+ D +K
Sbjct: 109 MILSGNSIEHALMTLAAM-----------QAG-------VPAAPVSPAYSLMSHDHAKLK 150
Query: 200 QIIDR-APRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERV---------GAQKMFE 249
+ D PR V A +RA+ + ++ V + +
Sbjct: 151 HLFDLVKPR----------VVFAQSGAPFARALAALDLLDVTVVHVTGPGEGIASIAFAD 200
Query: 250 EVPPKPTD-------------LCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHR 296
PT + +TSG+TG PK V+ T ++ A A QL
Sbjct: 201 LAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQR-MMCANIAMQEQLRPRE 259
Query: 297 PKYS-DVLISFLPLAHMLERTCESAMFLVGGSIGYYSG----------DIKNLTEDMKTL 345
P V + ++P H + L GG Y I+NL E +
Sbjct: 260 PDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLRE----I 315
Query: 346 KPTIMPAVPRLLNRMYDKVMAQ---IRPSFIKRLMFNMAMG 383
PT+ VP M + M + +R SF K L MA G
Sbjct: 316 SPTVYGNVPAGYA-MLAEAMEKDDALRRSFFKNLRL-MAYG 354
>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase
(FACL) similar to Fum10p of Gibberella moniliformis.
FACL catalyzes the formation of fatty acyl-CoA in a
two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions. Fum10p is a fatty acid CoA ligase
involved in the synthesis of fumonisin, a polyketide
mycotoxin, in Gibberella moniliformis.
Length = 345
Score = 53.8 bits (130), Expect = 5e-08
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Query: 255 PTDLCTICYTSGTTGNPKGVMLTHGNVIAAIS--AALLQLSDHRPKYSDVLISFLPLAH 311
P D I +TSGTTG PKGV LTH N++A+ A +L+ D ++ +PL H
Sbjct: 1 PDDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTPS-----DRCLNVMPLFH 54
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional.
Length = 3956
Score = 54.4 bits (131), Expect = 7e-08
Identities = 43/209 (20%), Positives = 76/209 (36%), Gaps = 48/209 (22%)
Query: 113 QWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIV----A 168
Q + Y + +A L+ GV P VGI + E ++ ++ V
Sbjct: 536 QVLSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVV--------GLLAVLKAGG 587
Query: 169 LYDTLGP----DACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQ 224
Y L P D A++++ + + +L+ ++ + P +R + +
Sbjct: 588 AYVPLDPEYPQDRLAYMLDDSGVRLLLTQS-----HLLAQLPVP----AGLRSLCLDE-- 636
Query: 225 RARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHG---NV 281
G EV P +L + YTSG+TG PKGV ++HG N
Sbjct: 637 ------------PADLLCGYSGHNPEVALDPDNLAYVIYTSGSTGQPKGVAISHGALANY 684
Query: 282 IAAISAALLQLSDHRPKYSDVLISFLPLA 310
+ I+ L +D D ++ A
Sbjct: 685 VCVIAERLQLAAD------DSMLMVSTFA 707
Score = 44.0 bits (104), Expect = 1e-04
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 250 EVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISA 287
V P +L + YTSG+TG PKG HG ++ + A
Sbjct: 1712 AVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCA 1749
Score = 35.9 bits (83), Expect = 0.038
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 255 PTDLCTICYTSGTTGNPKGVMLTHG 279
+L + YTSG+TG PKGV + HG
Sbjct: 3236 GENLAYVIYTSGSTGKPKGVGVRHG 3260
>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated.
Length = 497
Score = 53.7 bits (129), Expect = 7e-08
Identities = 43/182 (23%), Positives = 67/182 (36%), Gaps = 25/182 (13%)
Query: 105 RQNISRPY-----QWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGA 159
R+ R Q I Y + R L G+ G V + +N ++ A
Sbjct: 13 RRTPDRAALVYRDQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAA 72
Query: 160 YCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVR 219
+ + + L D A+I+ A +L+VD++ D I I
Sbjct: 73 SYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEE------FDAIVALETPKIVIDAAA 126
Query: 220 MATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHG 279
A +R G ++ + PTDL + YTSGTT PKGVM ++G
Sbjct: 127 QADSRRLAQ--------------GGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYG 172
Query: 280 NV 281
N+
Sbjct: 173 NL 174
>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated.
Length = 545
Score = 53.8 bits (130), Expect = 8e-08
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 234 IRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLS 293
IR + + A + V DL + TSG+TG+PK V +THGN+ A A+ +
Sbjct: 130 IRVLTVADLLAADPIDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANA-EAMFVAA 188
Query: 294 DHRPKYSDVLISFLPLAH 311
+ + +DV++S+LPL H
Sbjct: 189 EFDVE-TDVMVSWLPLFH 205
>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 359
Score = 52.7 bits (127), Expect = 1e-07
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 255 PTDLCTICYTSGTTGNPKGVMLTHGN-VIAAISAALLQLSDHRPKYSDVLISFLPLAHM- 312
P DL +T GTTG PK +H N V A AAL LS P DVL++ LPL H+
Sbjct: 1 PDDLAAYFHTGGTTGAPKLARHSHRNEVANAWMAAL--LSGLGP--GDVLLNGLPLFHVG 56
Query: 313 -LERTCESAMFLVGGSI------GYYS-GDIKNLTEDMKTLKPTIMPAVPRLLNRM 360
T A G ++ G+ + + N + ++ + T++ AVP +L +
Sbjct: 57 GAIVTG-LAPLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVLAAL 111
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA).
DltA belongs to the class I AMP-forming adenylation
domain superfamily, which also includes acetyl-CoA
synthetase, luciferase, and the adenylation domains of
non-ribosomal synthetases. It catalyzes the two-step
activation reaction of D-alanine: the formation of a
substrate-AMP molecule as an intermediate, and then the
transfer of the amino acid adenylate to teichoic acid in
the biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram-positive bacteria.
Length = 447
Score = 52.6 bits (127), Expect = 2e-07
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
Query: 239 IERVGAQKMFEEVPPK-----PTDLCTICYTSGTTGNPKGVMLTHGNVIA 283
ER+ K+ E P P DL I +TSG+TG PKGV ++H N+ +
Sbjct: 77 AERI--AKILEAAGPAALVADPDDLAYILFTSGSTGKPKGVQISHANLAS 124
Score = 28.7 bits (65), Expect = 6.7
Identities = 19/79 (24%), Positives = 28/79 (35%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPD 176
Y + RA + LL LG G V +Y P+ V L + +
Sbjct: 19 YAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAILACLKAGAAYVPLDPSQPAE 78
Query: 177 ACAFIINQAEISVLIVDDD 195
A I+ A + L+ D D
Sbjct: 79 RIAKILEAAGPAALVADPD 97
>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase.
Length = 567
Score = 52.2 bits (125), Expect = 2e-07
Identities = 52/197 (26%), Positives = 81/197 (41%), Gaps = 24/197 (12%)
Query: 109 SRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVA 168
S Y W Q R R S L + PGS V + + N P G ++
Sbjct: 43 SVRYTWA---QTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAVVNC 99
Query: 169 LYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKK----------IISIREV 218
+ L AF++ ++ V++VD + + + A + L + +I I +
Sbjct: 100 VNIRLNAPTIAFLLEHSKSEVVMVDQEF--FTLAEEALKILAEKKKSSFKPPLLIVIGDP 157
Query: 219 RMA--TMQRARSR-AIEIIRFDEIERVGAQKMFEEVPPKPT-DLCTICYTSGTTGNPKGV 274
++Q A + AIE +F E F PP + YTSGTT +PKGV
Sbjct: 158 TCDPKSLQYALGKGAIEYEKFLE----TGDPEFAWKPPADEWQSIALGYTSGTTASPKGV 213
Query: 275 MLTH-GNVIAAISAALL 290
+L H G + A+S AL+
Sbjct: 214 VLHHRGAYLMALSNALI 230
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 52.5 bits (126), Expect = 3e-07
Identities = 43/137 (31%), Positives = 73/137 (53%), Gaps = 17/137 (12%)
Query: 201 IIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCT 260
I D PR L + +R+ + + A + A E++ D ++ A+ ++E +P D+
Sbjct: 112 IADAEPRLLLTVADLRDSLLQMEELAAANAPELLCVDTLDPALAEA-WQEPALQPDDIAF 170
Query: 261 ICYTSGTTGNPKGVMLTHGNVIAAISAALLQLS---DHRPKYSDVLISFLPLAHMLERTC 317
+ YTSG+T PKGV ++HGN++A + L++ D P DV++S+LPL H
Sbjct: 171 LQYTSGSTALPKGVQVSHGNLVA--NEQLIRHGFGIDLNP--DDVIVSWLPLYH------ 220
Query: 318 ESAMFLVGGSI-GYYSG 333
M L+GG + +SG
Sbjct: 221 --DMGLIGGLLQPIFSG 235
Score = 37.5 bits (87), Expect = 0.013
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 255 PTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRP 297
P + YTSG+TG PKGV+++HG IA A+++ R
Sbjct: 2332 PQHQAYLIYTSGSTGKPKGVVVSHGE-IAMHCQAVIERFGMRA 2373
Score = 35.5 bits (82), Expect = 0.055
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 255 PTDLCTICYTSGTTGNPKGVMLT 277
P +L + YTSG+TG PKGVM+
Sbjct: 3868 PDNLAYVIYTSGSTGLPKGVMVE 3890
Score = 35.1 bits (81), Expect = 0.077
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 257 DLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSD-HRPKYSDVLISFLPLA 310
+L + YTSG+TG PKGV TH AA++ L + + SDVL+ P++
Sbjct: 1274 NLAYVIYTSGSTGQPKGVGNTH----AALAERLQWMQATYALDDSDVLMQKAPIS 1324
>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including salinosporamide A
polyketide synthase. The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
This family includes the myxovirescin (TA) antibiotic
biosynthetic gene in Myxococcus xanthus; TA production
plays a role in predation. It also includes the
salinosporamide A polyketide synthase which is involved
in the biosynthesis of salinosporamide A, a marine
microbial metabolite whose chlorine atom is crucial for
potent proteasome inhibition and anticancer activity.
Length = 438
Score = 51.0 bits (123), Expect = 4e-07
Identities = 35/125 (28%), Positives = 49/125 (39%), Gaps = 40/125 (32%)
Query: 255 PTDLCTICYTSGTTGNPKGVMLTHGNVIAAISA--ALLQLSDHRPKYSDVL--------- 303
P DL + YTSG+TG PKGV ++H ++ + + L SD L
Sbjct: 92 PDDLAYVIYTSGSTGKPKGVEVSHRALVNFLLSMARRPGLGA-----SDRLLAVTTISFD 146
Query: 304 IS----FLPLAHMLERTCESAMFLVGGSIGYYS----GDIKNLTEDMKTLKPTIMPAVP- 354
IS LPL L G ++ S D + L + + TIM A P
Sbjct: 147 ISVLELLLPL-------------LSGATVVIASAETVRDPERLARLIADERITIMQATPA 193
Query: 355 --RLL 357
R+L
Sbjct: 194 TWRML 198
Score = 36.8 bits (86), Expect = 0.015
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 12/90 (13%)
Query: 113 QWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIIT------EQGAYCYSMII 166
+ + Y + R+ + L LGV PG VG+ + + + AY
Sbjct: 11 RTLSYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALLAILKAGAAY------ 64
Query: 167 VALYDTLGPDACAFIINQAEISVLIVDDDS 196
V L + + +++ AE ++L+ D D
Sbjct: 65 VPLDPSYPAERLQYMLEDAEPALLLTDPDD 94
>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed.
Length = 547
Score = 51.2 bits (123), Expect = 5e-07
Identities = 55/218 (25%), Positives = 79/218 (36%), Gaps = 49/218 (22%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGP- 175
Y + GL LGV G V N E+ + Y I A+ + L P
Sbjct: 58 YRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVL----YLACSRIGAVLNPLMPI 113
Query: 176 ---DACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIE 232
+F++ AE VL+V P+ + R A M R +
Sbjct: 114 FRERELSFMLKHAESKVLVV-------------PK------TFRGFDHAAMARRLRPELP 154
Query: 233 IIRF---------DEIERVGAQKMFEEVP----------PKPTDLCTICYTSGTTGNPKG 273
+R D E + +E+ P P P D+ + YTSGTTG PKG
Sbjct: 155 ALRHVVVVGGDGADSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKG 214
Query: 274 VMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAH 311
VM T ++A I +L DV++ P+AH
Sbjct: 215 VMHTANTLMANIVPYAERL---GLGADDVILMASPMAH 249
>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL). CBAL catalyzes
the conversion of 4-chlorobenzoate (4-CB) to
4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step
adenylation and thioester-forming reactions.
4-Chlorobenzoate (4-CBA) is an environmental pollutant
derived from microbial breakdown of aromatic pollutants,
such as polychlorinated biphenyls (PCBs), DDT, and
certain herbicides. The 4-CBA degrading pathway converts
4-CBA to the metabolite 4-hydroxybezoate (4-HBA),
allowing some soil-dwelling microbes to utilize 4-CBA as
an alternate carbon source. This pathway consists of
three chemical steps catalyzed by 4-CBA-CoA ligase,
4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in
sequential reactions.
Length = 495
Score = 51.0 bits (122), Expect = 6e-07
Identities = 44/211 (20%), Positives = 82/211 (38%), Gaps = 43/211 (20%)
Query: 115 IHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLG 174
+ Y++ R + L GV P V + + N + +I ++AL+ LG
Sbjct: 29 LTYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVI----------ALLALH-RLG 77
Query: 175 PDACAFIIN----QAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRA 230
A ++N AEI+ LI + + A + +
Sbjct: 78 --AVPALMNPRLKPAEIAELIKRGE------MTAAVIAVDAQV-------MDAIFQSGSG 122
Query: 231 IEIIRFDEIERVG----AQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTH----GNVI 282
+ ++ ++ +G A E+ P +P + YTSGTTG PKG ++ V+
Sbjct: 123 VRVLALGDLVGLGEPESAGPPIEDPPREPEQPAFVFYTSGTTGLPKGAVIPQRAAESRVL 182
Query: 283 AAISAALLQLSDHRPKYSDVLISFLPLAHML 313
+ A L+ H +V++ +PL H++
Sbjct: 183 FMSTQAGLRHGRH-----NVVLGLMPLYHVI 208
>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated.
Length = 576
Score = 50.6 bits (121), Expect = 8e-07
Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 4/147 (2%)
Query: 134 LGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVD 193
LG+ VG NC E + C + L L D IIN AE V++ D
Sbjct: 59 LGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVAD 118
Query: 194 --DDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEV 251
+ +I+ P C++ ++ I + I++ + E G +++
Sbjct: 119 PRLAEQLGEILKECP-CVRAVVFIGPSDADSAAAHMPEGIKVYSY-EALLDGRSTVYDWP 176
Query: 252 PPKPTDLCTICYTSGTTGNPKGVMLTH 278
T ICY++GTTG PKGV+ +H
Sbjct: 177 ELDETTAAAICYSTGTTGAPKGVVYSH 203
>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1.
Length = 546
Score = 50.4 bits (120), Expect = 9e-07
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 21/178 (11%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPD 176
Y + + R F L LG+ G V + N E+ I G M ++ P
Sbjct: 58 YGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGI----MAAGGVFSGANPT 113
Query: 177 AC-AFIINQAEIS--VLIVDDDSKCNQIIDRAPRCLK-KIISIREVRMATMQRARSRAIE 232
A + I QAE + LIV +D+ ++ + L +I + E ++ +
Sbjct: 114 ALESEIKKQAEAAGAKLIVTNDTNYGKV-----KGLGLPVIVLGEEKIEGAVNWKEL--- 165
Query: 233 IIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALL 290
+ +R G EE+ TDLC + ++SGTTG KGVMLTH N++A + ++L
Sbjct: 166 ---LEAADRAGDTSDNEEI--LQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLF 218
>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein]
ligase; Validated.
Length = 539
Score = 49.8 bits (119), Expect = 1e-06
Identities = 28/57 (49%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 255 PTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAH 311
P D+ I +TSGT PKGV LTH N++A A L S PK DV++SFLP H
Sbjct: 182 PEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFS---PKEDDVMMSFLPPFH 235
>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed.
Length = 547
Score = 49.7 bits (119), Expect = 1e-06
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 249 EEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISA--ALLQLSDHRPKYSDVLISF 306
+ +L + +TSGT G PKGVMLTH N++A+ A A L L+ + DV +
Sbjct: 180 TAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLT-----WQDVFMMP 234
Query: 307 LPLAH 311
PL H
Sbjct: 235 APLGH 239
>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase.
Length = 563
Score = 49.4 bits (118), Expect = 2e-06
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 255 PTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLE 314
P D IC+TSGTTG PKGV ++H A I +L +++ DV + PL H+
Sbjct: 171 PDDAVLICFTSGTTGRPKGVTISH---SALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGG 227
Query: 315 RTCESAMFLVGGS 327
+ AM +VG
Sbjct: 228 LSSALAMLMVGAC 240
>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase,
AACS). AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms. AACS is widely distributed in bacteria,
archaea and eukaryotes. In bacteria, AACS is known to
exhibit an important role in the metabolism of
poly-b-hydroxybutyrate, an intracellular reserve of
organic carbon and chemical energy by some
microorganisms. In mammals, AACS influences the rate of
ketone body utilization for the formation of
physiologically important fatty acids and cholesterol.
Length = 616
Score = 49.1 bits (118), Expect = 3e-06
Identities = 44/208 (21%), Positives = 75/208 (36%), Gaps = 30/208 (14%)
Query: 94 KESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWI 153
+ ++N + + I + + + + L LGV PG V Y N PE +
Sbjct: 66 RHADNDPAAIYAAGEDGERREISWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAV 125
Query: 154 ITEQGAYCYSMI----IVALYDTLGPD--ACAFI--INQAEISVLIVDD----------- 194
I +M+ I A++ + PD A + Q E VL D
Sbjct: 126 I--------AMLATASIGAIWSSCSPDFGVEAVLDRFGQIEPKVLFAVDGYVYNGKEHDR 177
Query: 195 DSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPK 254
K +I+ P L+ ++ + + A + + + A FE +P
Sbjct: 178 REKIAEIVKGLPS-LEAVVVVPYLSSDAQPAALKFSALTLLWSLAGDRAAPLEFERLPF- 235
Query: 255 PTDLCTICYTSGTTGNPKGVMLTHGNVI 282
I Y+SGTTG PK ++ G +
Sbjct: 236 -DHPLWILYSSGTTGLPKCIVHGAGGTL 262
>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated.
Length = 540
Score = 48.6 bits (116), Expect = 3e-06
Identities = 41/203 (20%), Positives = 70/203 (34%), Gaps = 21/203 (10%)
Query: 118 NQALLRAR--NFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGP 175
++A LRA + L GV G V ++ NC EW++ ++A+
Sbjct: 37 SRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTRYRS 96
Query: 176 DACAFIINQAEISVLIV-------DDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARS 228
A I+ + L+V D + + A L+ I + + AT A
Sbjct: 97 HEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPG 156
Query: 229 RAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICY-TSGTTGNPKGVMLTHGNVI--AAI 285
+++ + A D + + TSGTT PK V+ ++ A
Sbjct: 157 ARVQLFALPDPAPPAAAG----ERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARA 212
Query: 286 SAALLQLSDHRPKYSDVLISFLP 308
A VL++ LP
Sbjct: 213 IARAYGYDP-----GAVLLAALP 230
>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family. Characterized
members of this protein family include benzoate-CoA
ligase, 4-hydroxybenzoate-CoA ligase,
2-aminobenzoate-CoA ligase, etc. Members are related to
fatty acid and acetate CoA ligases.
Length = 508
Score = 48.3 bits (115), Expect = 4e-06
Identities = 56/266 (21%), Positives = 92/266 (34%), Gaps = 54/266 (20%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPD 176
Y + + R G+ L LGV V + + ++ I GA ++ VAL L D
Sbjct: 33 YGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTAD 92
Query: 177 ACAFIINQAEISVLIVDDD--SKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEII 234
A+++ + V+ V + + ++P L+ + + +Q A A E
Sbjct: 93 DYAYMLEDSRARVVFVSGELLPVIKAALGKSPH-LEHRVVVGRPEAGEVQLAELLATE-- 149
Query: 235 RFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSD 294
+ F+ + D Y+SG+TG PKGV+ TH N
Sbjct: 150 ----------SEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLG 199
Query: 295 HRPKYSDVLIS--------------FLPLA------HMLERTCESAMFLVGGSIGYYSGD 334
R DV+ S P++ M ER A+F
Sbjct: 200 IRE--DDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPDAVF------------ 245
Query: 335 IKNLTEDMKTLKPTIMPAVPRLLNRM 360
+ ++ +PTI VP L M
Sbjct: 246 -----DRLRRHQPTIFYGVPTLYAAM 266
>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase;
Provisional.
Length = 542
Score = 48.2 bits (115), Expect = 4e-06
Identities = 44/203 (21%), Positives = 64/203 (31%), Gaps = 19/203 (9%)
Query: 113 QWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVAL-YD 171
Y +A A L GV G V + N E++ G I V +
Sbjct: 45 TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPINTA 104
Query: 172 TLGPDACAFIINQAEISVLIVDDD-SKCNQIIDRAPRCLKKIISIREVRMATMQRARSRA 230
GP I+ + +L+V+ + D L + + ++
Sbjct: 105 LRGPQ-LEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASVSVPAG---- 159
Query: 231 IEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVI--AAISAA 288
+ +P D I YTSGTTG KGV H SA
Sbjct: 160 -----WSTAPLPPLDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAE 214
Query: 289 LLQLSDHRPKYSDVLISFLPLAH 311
L++ DVL + LPL H
Sbjct: 215 DLEIGA-----DDVLYTTLPLFH 232
>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate
forming enzymes. This family contains benzoate CoA
ligase (BCL) and related ligases that catalyze the
acylation of benzoate derivatives, 2-aminobenzoate and
4-hydroxybenzoate. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Xenobiotic aromatic compounds are
also a major class of man-made pollutants. Some bacteria
use benzoate as the sole source of carbon and energy
through benzoate degradation. Benzoate degradation
starts with its activation to benzoyl-CoA by benzoate
CoA ligase. The reaction catalyzed by benzoate CoA
ligase proceeds via a two-step process; the first
ATP-dependent step forms an acyl-AMP intermediate, and
the second step forms the acyl-CoA ester with release of
the AMP.
Length = 436
Score = 47.7 bits (114), Expect = 6e-06
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 15/114 (13%)
Query: 255 PTDLCTICYTSGTTGNPKGVMLTHGNVIA---AISAALLQLSDHRPKYSDVLISF-LPLA 310
D+ YTSGTTG PKGVM H + + A + LL L +S + F L
Sbjct: 90 ADDIAYWLYTSGTTGKPKGVMHRHRDPLTFAEAFARELLGLQPGDRIFSSSKLFFAYGLG 149
Query: 311 HMLERTCESAMF--LVGGSIGYYSG--DIKNLTEDMKTLKPTIMPAVPRLLNRM 360
+ L +F G S G + + + + +PT++ VP L +
Sbjct: 150 NSL-------LFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVPALYRAL 196
Score = 41.6 bits (98), Expect = 6e-04
Identities = 21/86 (24%), Positives = 36/86 (41%)
Query: 113 QWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDT 172
Q + Y + A F + L LGV+PG V + + PE + + VAL
Sbjct: 9 QSLTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPL 68
Query: 173 LGPDACAFIINQAEISVLIVDDDSKC 198
L P I++ + ++L+ + D
Sbjct: 69 LTPQDLEHILDDSGAALLVTEADDIA 94
>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional.
Length = 1296
Score = 47.7 bits (114), Expect = 8e-06
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 250 EVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRP 297
+P I +TSG+TG PKGVM+ AI LL + +H P
Sbjct: 592 LQLSQPHHTAYIIFTSGSTGRPKGVMVGQ----TAIVNRLLWMQNHYP 635
>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like.
Length = 560
Score = 47.5 bits (113), Expect = 8e-06
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 250 EVPPKPT----DLCTICYTSGTTGNPKGVMLTHGNVIAAISAAL-LQLSDHR-PKYSDVL 303
+ PKP D+ I Y+SGTTG KGV+LTH N+IA + + + S + P +V
Sbjct: 188 DFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVY 247
Query: 304 ISFLPLAHM 312
++ LP+ H+
Sbjct: 248 LAALPMFHI 256
>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual
roles as fatty acid transporters and its activation
enzymes. Fatty acid transport protein (FATP) transports
long-chain or very-long-chain fatty acids across the
plasma membrane. FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. At least
five copies of FATPs are identified in mammalian cells.
This family also includes prokaryotic FATPs. FATPs are
the key players in the trafficking of exogenous fatty
acids into the cell and in intracellular fatty acid
homeostasis.
Length = 444
Score = 47.2 bits (113), Expect = 8e-06
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 10/77 (12%)
Query: 256 TDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAH---- 311
D YTSGTTG PK +++H + A A+ DVL LPL H
Sbjct: 81 VDPAFYIYTSGTTGLPKAAIMSHRRWLRA--GAVFGGLGLLKP-DDVLYLCLPLYHSNAL 137
Query: 312 MLERTCESAMFLVGGSI 328
+ S+ G S+
Sbjct: 138 TV---GWSSALAAGASL 151
Score = 36.8 bits (86), Expect = 0.018
Identities = 18/77 (23%), Positives = 31/77 (40%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPD 176
Y + A + L LGV G V + +N PE+++ + + T +
Sbjct: 6 YAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALINTTQRGE 65
Query: 177 ACAFIINQAEISVLIVD 193
A IN ++ +IVD
Sbjct: 66 VLAHCINVSDARAVIVD 82
>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase.
Members of this protein family are
cyclohexanecarboxylate-CoA ligase. This enzyme prepares
the aliphatic ring compound, cyclohexanecarboxylate, for
dehydrogenation and then degradation by a pathway also
used in benzoyl-CoA degradation in Rhodopseudomonas
palustris.
Length = 538
Score = 47.2 bits (112), Expect = 9e-06
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 253 PKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHM 312
P P D+ + YTSGTTG PKGVM T + + I +L DV++ P+AH
Sbjct: 192 PSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERL---ELGGGDVILMASPMAHQ 248
>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 439
Score = 47.0 bits (112), Expect = 9e-06
Identities = 21/71 (29%), Positives = 28/71 (39%)
Query: 123 RARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFII 182
+ + L LGV G VG+Y PE I Y + V L GPDA +
Sbjct: 15 ASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVLFGPDAVEHRL 74
Query: 183 NQAEISVLIVD 193
+ VL+ D
Sbjct: 75 RDSGARVLVTD 85
Score = 41.6 bits (98), Expect = 5e-04
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 255 PTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLS-DHRPKYSDVL 303
D + YTSGTTG PKG + H ++ + ++L + P+ DV
Sbjct: 87 SDDPAILIYTSGTTGPPKGALHGHRVLLGHL--PGVELYFELAPRPGDVF 134
>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated.
Length = 471
Score = 46.9 bits (112), Expect = 1e-05
Identities = 28/63 (44%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 249 EEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLP 308
E P L I YTSGTTG PKGV+L+ IAA AL + DVL+ LP
Sbjct: 123 PEPDPDAPAL--IVYTSGTTGPPKGVVLSR-RAIAADLDALAEAWQWTAD--DVLVHGLP 177
Query: 309 LAH 311
L H
Sbjct: 178 LFH 180
>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA
synthetase like family (ACS). This family is most
similar to acetyl-CoA synthetase. Acetyl-CoA synthetase
(ACS) catalyzes the formation of acetyl-CoA from
acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is only present in bacteria.
Length = 443
Score = 47.0 bits (112), Expect = 1e-05
Identities = 38/183 (20%), Positives = 60/183 (32%), Gaps = 54/183 (29%)
Query: 115 IHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLG 174
Y + + F + L LGV G V PE + G + L+ G
Sbjct: 1 YSYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFG 60
Query: 175 PDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEII 234
P+ I DR ++ ++ +
Sbjct: 61 PEP-----------------------IRDR------------------LELGEAKVL--- 76
Query: 235 RFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSD 294
+ +++E P+ D + +TSGTTG PKGV+ H V+A + A L D
Sbjct: 77 -------ITTPELYERTDPE--DPALLHFTSGTTGKPKGVLHVHRAVVAHYATARYVL-D 126
Query: 295 HRP 297
RP
Sbjct: 127 LRP 129
>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Saframycin A gene
cluster from Streptomyces lavendulae. The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the saframycin A gene
cluster from Streptomyces lavendulae which implicates
the NRPS system for assembling the unusual tetrapeptidyl
skeleton in an iterative manner. It also includes
saframycin Mx1 produced by Myxococcus xanthus NRPS.
Length = 449
Score = 46.9 bits (112), Expect = 1e-05
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 255 PTDLCTICYTSGTTGNPKGVMLTHGNVIAAI 285
P DL + YTSG+TG PKGV + H N A +
Sbjct: 104 PDDLAYVIYTSGSTGRPKGVAIEHRNAAALL 134
Score = 29.9 bits (68), Expect = 2.4
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 123 RARNFGSGLLGLGVNPGSFVGIYSQNCPEWIIT-----EQGAYCYSMIIVALYDTLGPDA 177
RA + L GV P S VG+ + P+ ++ + GA Y V L P+
Sbjct: 33 RANRLAARLRAAGVGPESRVGVCLRRSPDLVVALLAVLKAGA-AY----VPLDPAYPPER 87
Query: 178 CAFIINQAEISVLIVDDD 195
A+I+ A +++ D D
Sbjct: 88 LAYILEDAGARLVLTDPD 105
>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated.
Length = 560
Score = 47.0 bits (112), Expect = 1e-05
Identities = 24/70 (34%), Positives = 36/70 (51%)
Query: 254 KPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHML 313
P DL + YT GTTG KG MLTH N++A + A +++++ LPL H+
Sbjct: 204 VPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALPLYHIF 263
Query: 314 ERTCESAMFL 323
T +F+
Sbjct: 264 ALTVNCLLFI 273
>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA
ligase and acetyl-activating enzyme). Acetyl-CoA
synthetase (ACS) catalyzes the formation of acetyl-CoA
from acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is widely present in all living organisms. The
activity of this enzyme is crucial for maintaining the
required levels of acetyl-CoA, a key intermediate in
many important biosynthetic and catabolic processes.
Acetyl-CoA is used in the biosynthesis of glucose, fatty
acids, and cholesterol. It can also be used in the
production of energy in the citric acid cycle.
Eukaryotes typically have two isoforms of acetyl-CoA
synthetase, a cytosolic form involved in biosynthetic
processes and a mitochondrial form primarily involved in
energy generation.
Length = 602
Score = 46.4 bits (111), Expect = 2e-05
Identities = 51/187 (27%), Positives = 68/187 (36%), Gaps = 39/187 (20%)
Query: 115 IHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQ-----GAYCYSMIIVAL 169
I Y + F + L LGV G V IY PE I GA I +
Sbjct: 79 ITYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELPIAMLACARIGA-----IHSVV 133
Query: 170 YDTLGPDACAFIINQAEISVLIVDDDSKCN-------QIIDRAPRCLKKIISIREV---- 218
+ +A A IN A+ +LI D +I+D A L+K S+ +V
Sbjct: 134 FAGFSAEALADRINDAKSKLLITADGGYRGGKVIPLKEIVDEA---LEKCPSVEKVIVVK 190
Query: 219 ---RMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKP---TDLCTICYTSGTTGNPK 272
M R D + + P+P D I YTSG+TG PK
Sbjct: 191 RTGGEVPMVEGRDVWWH----DLMAKASP-----YCEPEPMDAEDPLFILYTSGSTGKPK 241
Query: 273 GVMLTHG 279
GV+ T G
Sbjct: 242 GVVHTTG 248
>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional.
Length = 540
Score = 46.2 bits (110), Expect = 2e-05
Identities = 45/204 (22%), Positives = 70/204 (34%), Gaps = 28/204 (13%)
Query: 110 RPYQWIHYNQALLRARNFGSGLLGLGVNPGSF-VGIYSQNCPEWIITEQGAYCYSMIIVA 168
R + W + L A + L+ L VG+ N PE + A ++V
Sbjct: 25 RTWTW---REVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYVLVG 81
Query: 169 LYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARS 228
L T A A I +A+ +L+ D + + + +
Sbjct: 82 LNTTRRGAALAADIRRADCQLLVTDAEHR--------------------PLLDGLDLPGV 121
Query: 229 RAIEIIRFDEIERVGAQKMFE-EVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISA 287
R +++ E V A D + +TSGTTG PK V +HG + A
Sbjct: 122 RVLDVDTPAYAELVAAAGALTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRL-AFAGR 180
Query: 288 ALLQLSDHRPKYSDVLISFLPLAH 311
AL + DV +PL H
Sbjct: 181 ALTERFGLTR--DDVCYVSMPLFH 202
>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase. This model
describes acetate-CoA ligase (EC 6.2.1.1), also called
acetyl-CoA synthetase and acetyl-activating enzyme. It
catalyzes the reaction ATP + acetate + CoA = AMP +
diphosphate + acetyl-CoA and belongs to the family of
AMP-binding enzymes described by pfam00501.
Length = 625
Score = 46.1 bits (110), Expect = 2e-05
Identities = 47/182 (25%), Positives = 66/182 (36%), Gaps = 28/182 (15%)
Query: 115 IHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLG 174
I Y + F + L LGV G V IY PE I I ++
Sbjct: 89 ITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAIHSVVFGGFS 148
Query: 175 PDACAFIINQAEISVLIVDDDSK-------CNQIIDRA----PRCLKKIISIREVRMA-- 221
+A A IN A ++I D+ I+D A P ++ ++ +R R
Sbjct: 149 AEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVR--RTGNP 206
Query: 222 -TMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPT---DLCTICYTSGTTGNPKGVMLT 277
R D + + A P+P D I YTSG+TG PKGV+ T
Sbjct: 207 VPWVEGRDVWWH----DLMAKASA-----YCEPEPMDSEDPLFILYTSGSTGKPKGVLHT 257
Query: 278 HG 279
G
Sbjct: 258 TG 259
>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated.
Length = 579
Score = 45.8 bits (109), Expect = 3e-05
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 16/77 (20%)
Query: 252 PPKPTDLCTICYTSGTTGNPKGVMLTHGNVIA---AISAALLQLSDHRPKYSDVLISFLP 308
P P D+ + Y+SG+T P+GV++TH ++A AIS L++ RP D +S+LP
Sbjct: 172 RPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKV---RP--GDRCVSWLP 226
Query: 309 LAHMLERTCESAMFLVG 325
H M LVG
Sbjct: 227 FYH--------DMGLVG 235
>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 448
Score = 45.7 bits (109), Expect = 3e-05
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 14/83 (16%)
Query: 252 PPKPTDLCTICYTSGTTGNPKGVMLTH---GNVIAAISAAL--LQLSDHRPKYSDVLISF 306
P I YTSG+TG PKGV L+ V +++ A+ L+ H +
Sbjct: 108 VELPAGTAKITYTSGSTGQPKGVCLSAAALETVAQSLAEAIAILEPERH--------LCL 159
Query: 307 LPLAHMLER-TCESAMFLVGGSI 328
LPLA +LE A L+G ++
Sbjct: 160 LPLATLLENIAGVYAPLLMGATV 182
>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase;
Provisional.
Length = 1140
Score = 45.7 bits (109), Expect = 3e-05
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 253 PKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAH 311
P D I +TSG+ G PKGV+L+H N++A + ++ D + + LP+ H
Sbjct: 790 RDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSP---EDKVFNALPVFH 845
>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed.
Length = 614
Score = 44.9 bits (107), Expect = 5e-05
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 9/52 (17%)
Query: 264 TSGTTGNPKGVMLTHGNVIAAISAALLQ----LSDHRPKYSDVLISFLPLAH 311
TSG+TG PK V+ TH + A L Q L++ P VL+ +LP H
Sbjct: 217 TSGSTGLPKAVINTHRM-LCANQQMLAQTFPFLAEEPP----VLVDWLPWNH 263
Score = 32.2 bits (74), Expect = 0.52
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 8/46 (17%)
Query: 103 GWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQN 148
GWR + Y +AL R R LL G++ + I S N
Sbjct: 66 GWR--------RLTYAEALERVRAIAQALLDRGLSAERPLMILSGN 103
>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit
1; Provisional.
Length = 503
Score = 44.5 bits (106), Expect = 6e-05
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 231 IEIIRFDEIERVGAQKMF--EEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVI 282
I +I DE++ + A + K D I +TSGTTG PKGV ++H N++
Sbjct: 116 IPVITLDELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLV 169
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional.
Length = 5163
Score = 44.6 bits (105), Expect = 8e-05
Identities = 41/192 (21%), Positives = 69/192 (35%), Gaps = 56/192 (29%)
Query: 113 QWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIIT------EQGAYCYSMII 166
Q + Y + RA L GV P V I ++ E ++ GAY
Sbjct: 2027 QHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAY------ 2080
Query: 167 VALYDTLGP-DACAFIINQAEISVLIVDDDSKCNQIIDRAP-----RCLKKIISIREVRM 220
V L D P + A+++ + ++L+ +++R P L
Sbjct: 2081 VPL-DPNYPAERLAYMLEDSGAALLLTQRH-----LLERLPLPAGVARL----------- 2123
Query: 221 ATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPK----PTDLCTICYTSGTTGNPKGVML 276
++R + + P +L + YTSG+TG PKGV +
Sbjct: 2124 -----------------PLDRDAEWADYPDTAPAVQLAGENLAYVIYTSGSTGLPKGVAV 2166
Query: 277 THGNVIAAISAA 288
+HG ++A AA
Sbjct: 2167 SHGALVAHCQAA 2178
Score = 41.1 bits (96), Expect = 0.001
Identities = 34/185 (18%), Positives = 60/185 (32%), Gaps = 45/185 (24%)
Query: 123 RARNFGSGLLGLGVNPGSFVGIYSQNCPEW------IITEQGAYCYSMIIVALYDTLGPD 176
RA L+ GV P VG+ + E I+ GAY V L +
Sbjct: 545 RANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAY------VPLDPEYPAE 598
Query: 177 ACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRF 236
A+++ + + +L+ L + + + + ++++
Sbjct: 599 RLAYMLEDSGVQLLLSQ-------------SHLGRKLPL------------AAGVQVLDL 633
Query: 237 DEIERVGAQKMFEEVPPK----PTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAAL--L 290
D + E P P +L + YTSG+TG PKG H + +
Sbjct: 634 DRPAAWLEG--YSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAY 691
Query: 291 QLSDH 295
L
Sbjct: 692 GLGVG 696
Score = 39.9 bits (93), Expect = 0.003
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 250 EVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISA 287
V P +L + YTSG+TG PKGV ++HG+++ + A
Sbjct: 4688 AVRLHPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHA 4725
Score = 34.9 bits (80), Expect = 0.086
Identities = 34/170 (20%), Positives = 58/170 (34%), Gaps = 34/170 (20%)
Query: 113 QWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDT 172
Q + Y + RA L+ GV P VG+ + E ++ V L
Sbjct: 3081 QRLSYAELNRRANRLAHRLIERGVGPDVLVGVAVERSLEMVVGLLAILKAGGAYVPLDPE 3140
Query: 173 LGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIE 232
+ A+++ + +L+ S +R+ Q + ++
Sbjct: 3141 YPEERLAYMLEDSGAQLLL----------------------SQSHLRLPLAQGVQVLDLD 3178
Query: 233 IIRFDEIERVGAQKMFEEVPPK---PTDLCTICYTSGTTGNPKGVMLTHG 279
G + E P P +L + YTSG+TG PKGV + H
Sbjct: 3179 ---------RGDENYAEANPAIRTMPENLAYVIYTSGSTGKPKGVGIRHS 3219
>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated.
Length = 534
Score = 44.1 bits (104), Expect = 9e-05
Identities = 47/198 (23%), Positives = 78/198 (39%), Gaps = 25/198 (12%)
Query: 121 LLR-ARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACA 179
L R + L G+ PG V + + E+++ A +++V L D P A
Sbjct: 49 LARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVVPL-DPALPIAEQ 107
Query: 180 FIINQAE-ISVLIVDDDSKCNQIIDRAP---RCLKKIISIREVRMATMQRARSRAIEIIR 235
+ +QA V+++D D DRA R +++ + + +
Sbjct: 108 RVRSQAAGARVVLIDADGPH----DRAEPTTRWWPLTVNVGGDSGPS-----GGTLSVHL 158
Query: 236 FDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISA--ALLQLS 293
E A E + P D I +T GTTG PK V TH N+ +++ A +LS
Sbjct: 159 DAATEPTPATSTPEGLRP---DDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLS 215
Query: 294 DHRPKYSDVLISFLPLAH 311
D ++ +PL H
Sbjct: 216 PR-----DATVAVMPLYH 228
>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated.
Length = 529
Score = 44.3 bits (105), Expect = 9e-05
Identities = 50/220 (22%), Positives = 72/220 (32%), Gaps = 48/220 (21%)
Query: 99 GRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQG 158
WR++I A LRAR L P VG+ N PE+ +
Sbjct: 26 DSFTSWREHIRGSAAR----AAALRAR------LDPTRPP--HVGVLLDNTPEFSLLLGA 73
Query: 159 AYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREV 218
A ++ V L T A A I A+ +++ + L + + V
Sbjct: 74 AALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHA------ELLDGLDPGVRVINV 127
Query: 219 -------RMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNP 271
+A + A P DL + +TSGT+G+P
Sbjct: 128 DSPAWADELAAHRDAEPPFRV--------------------ADPDDLFMLIFTSGTSGDP 167
Query: 272 KGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAH 311
K V TH V A+ L Q P DV +PL H
Sbjct: 168 KAVRCTHRKV-ASAGVMLAQRFGLGP--DDVCYVSMPLFH 204
>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated.
Length = 502
Score = 44.1 bits (105), Expect = 9e-05
Identities = 37/165 (22%), Positives = 56/165 (33%), Gaps = 27/165 (16%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPE-----WIITEQGAYCYSMIIVALYD 171
Y + R+ GL LG+ G V I +N PE W G Y +
Sbjct: 14 YGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLY-----YTPINW 68
Query: 172 TLGPDACAFIINQAEISVLIVDDD--SKCNQIIDRAPRCLKKIISIREVRMATMQRARSR 229
L A+I++ + VLIV ++ P + + +
Sbjct: 69 HLTAAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAGV-------PLLLVV------- 114
Query: 230 AIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGV 274
A + F E A + T + Y+SGTTG PKG+
Sbjct: 115 AGPVPGFRSYEEALAA-QPDTPIADETAGADMLYSSGTTGRPKGI 158
>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated.
Length = 578
Score = 44.2 bits (105), Expect = 9e-05
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 263 YTSGTTGNPKGVMLTHGNVIA---AISAALLQLSDHRPKYSDVLISFLPLAH 311
YTSG+T P GVM++H NVIA + + + P ++S+LP H
Sbjct: 167 YTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYH 218
>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated.
Length = 542
Score = 43.6 bits (103), Expect = 1e-04
Identities = 40/163 (24%), Positives = 59/163 (36%), Gaps = 14/163 (8%)
Query: 123 RARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFII 182
R L GV G V I N E++ + A I V + L P AF++
Sbjct: 51 RVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTPPEIAFLV 110
Query: 183 NQAEISVLIVDD--DSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIE 240
+ V++ + + D P L ++ S + D +
Sbjct: 111 SDCGAHVVVTEAALAPVATAVRDIVPL-LSTVVVAG---------GSSDDSVLGYEDLLA 160
Query: 241 RVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIA 283
G ++P L I YTSGTTG PKG +LTH N+
Sbjct: 161 EAGPAHAPVDIPNDSPAL--IMYTSGTTGRPKGAVLTHANLTG 201
>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein]
synthetase/2-acylglycerophosphoethanolamine
acyltransferase; Validated.
Length = 718
Score = 43.9 bits (104), Expect = 1e-04
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 250 EVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPL 309
+V +P D I +TSG+ G+PKGV+ +H +++A + + ++D P D +S LPL
Sbjct: 359 QVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVE-QIKTIADFTPN--DRFMSALPL 415
Query: 310 AH 311
H
Sbjct: 416 FH 417
>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated.
Length = 528
Score = 43.5 bits (103), Expect = 1e-04
Identities = 50/219 (22%), Positives = 75/219 (34%), Gaps = 39/219 (17%)
Query: 100 RCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGA 159
R WR+ +R AL A L GV G + ++S+NC + + A
Sbjct: 31 RSWTWREIDARV-------DALAAA------LAARGVRKGDRILVHSRNCNQMFESMFAA 77
Query: 160 YCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVR 219
+ + V PD A++ + +I D + A VR
Sbjct: 78 FRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFP-----EHA----------AAVR 122
Query: 220 MATMQRARSRAIEIIRF----DEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVM 275
A+ AI R + + D C +TSGTTG PK +
Sbjct: 123 AASPDLTHVVAIGGARAGLDYEALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAV 182
Query: 276 LTHGN---VIAAISAALLQLSDHRPKYSDVLISFLPLAH 311
LTHG VI A L+ + + D + PL+H
Sbjct: 183 LTHGQMAFVITNHLADLMPGTTEQ----DASLVVAPLSH 217
>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 440
Score = 43.2 bits (102), Expect = 1e-04
Identities = 38/183 (20%), Positives = 58/183 (31%), Gaps = 55/183 (30%)
Query: 115 IHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLG 174
+ Y + ++ + L LGV PG V PE ++ + I V L+ G
Sbjct: 1 LSYAELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYVPLFTAFG 60
Query: 175 PDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEII 234
P A + + + V++ + R
Sbjct: 61 PKAIEYRLGHSGAKVVVTNAA----------------------------NRG-------- 84
Query: 235 RFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSD 294
+ D+ DL YTSGTTG PKGV + N +AA A + D
Sbjct: 85 KLDD------------------DLFAQMYTSGTTGLPKGVPVPL-NALAAFYAYMRYAID 125
Query: 295 HRP 297
R
Sbjct: 126 LRD 128
>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL). ABCL catalyzes
the initial step in the 2-aminobenzoate aerobic
degradation pathway by activating 2-aminobenzoate to
2-aminobenzoyl-CoA. The reaction is carried out via a
two-step process; the first step is ATP-dependent and
forms a 2-aminobenzoyl-AMP intermediate, and the second
step forms the 2-aminobenzoyl-CoA ester and releases the
AMP. 2-Aminobenzoyl-CoA is further converted to
2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by
2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has
been purified from cells aerobically grown with
2-aminobenzoate as sole carbon, energy, and nitrogen
source, and has been characterized as a monomer.
Length = 487
Score = 43.2 bits (102), Expect = 1e-04
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 257 DLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDH--RPKYSDVLISFLPLA 310
D+ I +TSGTTG PKG M H +++A A H +P DV I PLA
Sbjct: 148 DVALIGFTSGTTGLPKGTMHFHRDILAICDA----FPRHVLQPTPDDVFIGSPPLA 199
>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP)
including hsFATP2, hsFATP5, and hsFATP6, and similar
proteins. Fatty acid transport proteins (FATP) of this
family transport long-chain or very-long-chain fatty
acids across the plasma membrane. At least five copies
of FATPs are identified in mammalian cells. This family
includes hsFATP2, hsFATP5, and hsFATP6, and similar
proteins. Each FATP has unique patterns of tissue
distribution. These FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. The hsFATP
proteins exist in two splice variants; the b variant,
lacking exon 3, has no acyl-CoA synthetase activity.
FATPs are key players in the trafficking of exogenous
fatty acids into the cell and in intracellular fatty
acid homeostasis.
Length = 535
Score = 43.2 bits (102), Expect = 2e-04
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 11/76 (14%)
Query: 255 PTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLE 314
YTSGTTG PK ++H V+ + +L L DV+ + LPL H
Sbjct: 141 IRSTALYIYTSGTTGLPKAARISHLRVLQC--SGMLSLCGVTAD--DVVYTTLPLYHS-- 194
Query: 315 RTCESAMFL-VGGSIG 329
S L + G IG
Sbjct: 195 ----SGALLGIVGCIG 206
>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated.
Length = 488
Score = 40.9 bits (96), Expect = 8e-04
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 19/81 (23%)
Query: 249 EEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVI-AAISAALLQLSDHRPKYSDVLISFL 307
+PP+ L I +TSGT+G PKGVML+ N+ A + +L D SFL
Sbjct: 130 PSIPPERVSL--ILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHS-------SFL 180
Query: 308 PLAHMLERTCESAMFLVGGSI 328
C++ MF + G I
Sbjct: 181 ---------CDAPMFHIIGLI 192
>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or
ACSM). MACS catalyzes the two-step activation of medium
chain fatty acids (containing 4-12 carbons). The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes.
Length = 430
Score = 40.8 bits (96), Expect = 8e-04
Identities = 31/154 (20%), Positives = 41/154 (26%), Gaps = 61/154 (39%)
Query: 126 NFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQA 185
+ L LGV G V + PE G + + LGP
Sbjct: 12 RAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLGPKD-------- 63
Query: 186 EISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQ 245
I R ++RA +RAI
Sbjct: 64 ---------------IRYR------------------LERAGARAIVTS----------- 79
Query: 246 KMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHG 279
D + +TSGTTG PK V+ TH
Sbjct: 80 ---------ADDPALLYFTSGTTGLPKMVLHTHS 104
>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 455
Score = 40.8 bits (96), Expect = 0.001
Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 239 IERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPK 298
+E PK D I +TSG+TG PKGV+ TH A I AL L R
Sbjct: 70 LEEAEPDAFIGI--PKADDPAAILFTSGSTGPPKGVVYTHRTFAAQID-ALRSLYGIREG 126
Query: 299 YSDVLIS-FLPLA 310
D ++ F P A
Sbjct: 127 --DRDLAAFPPFA 137
>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated.
Length = 631
Score = 40.9 bits (96), Expect = 0.001
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 19/93 (20%)
Query: 224 QRARSRAIEIIRFDEI-ERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTH---- 278
+R R +I D + + VGA + + + YTSG+T P GV +TH
Sbjct: 154 ERPR-----VIAVDAVPDEVGA--TWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLP 206
Query: 279 GNVIAAISAALLQLSDHRPKYSDVLISFLPLAH 311
NV+ I A Q D +S+LP H
Sbjct: 207 TNVLQVIDALEGQEGDRG-------VSWLPFFH 232
>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 509
Score = 40.5 bits (95), Expect = 0.001
Identities = 40/156 (25%), Positives = 63/156 (40%), Gaps = 9/156 (5%)
Query: 123 RARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFII 182
RA GL LGV PG V + +N + A V + P+ A+I+
Sbjct: 20 RAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYIL 79
Query: 183 NQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIR---EVRMATMQRARSRAIEIIRFDEI 239
+ VLI D + + P + ++S+ E+ A D
Sbjct: 80 EDSGARVLIAHADL-LHGLASALPAGVT-VLSVPTPPEIAAAYRISPALLTPPAGAIDWE 137
Query: 240 ERVGAQKMFEEVP-PKPTDLCTICYTSGTTGNPKGV 274
+ Q+ ++ P P+P ++ YTSGTTG+PKGV
Sbjct: 138 GWLAQQEPYDGPPVPQPQ---SMIYTSGTTGHPKGV 170
>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase,
subunit 1. This model represents the enzyme (also
called D-alanine-D-alanyl carrier protein ligase) which
activates D-alanine as an adenylate via the reaction
D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes
the condensation of the amino acid adenylate with the
D-alanyl carrier protein (D-ala-ACP). The D-alanine is
then further transferred to teichoic acid in the
biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram positive bacteria, both
polysacchatides [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan].
Length = 502
Score = 39.7 bits (93), Expect = 0.002
Identities = 14/22 (63%), Positives = 19/22 (86%)
Query: 261 ICYTSGTTGNPKGVMLTHGNVI 282
I YTSG+TGNPKGV ++H N++
Sbjct: 146 IIYTSGSTGNPKGVQISHDNLV 167
>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 542
Score = 39.7 bits (93), Expect = 0.002
Identities = 55/227 (24%), Positives = 86/227 (37%), Gaps = 37/227 (16%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMI------IVALY 170
Y + RA +GL LG+ PG V + N E+ IT ++++ ++AL
Sbjct: 56 YAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYIT-----FFALLRLGVAPVLALP 110
Query: 171 DTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRA 230
+ AF +Q E ++LIV A + K ++R V +A
Sbjct: 111 SHRASELGAFA-SQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAG-------- 161
Query: 231 IEIIRFDEIERVGAQKMFEEVPPKPTDLCTICY---TSGTTGNPKGVMLTHG----NVIA 283
E +E P P D + + + GTTG PK + TH +V A
Sbjct: 162 -EAEHPSVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRA 220
Query: 284 AISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAM--FLVGGSI 328
SA + V + LP AH + A+ FL GG++
Sbjct: 221 --SAEICGFDQQ-----TVYLCALPAAHNFPLSSPGALGVFLAGGTV 260
>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional.
Length = 501
Score = 39.6 bits (92), Expect = 0.002
Identities = 56/249 (22%), Positives = 94/249 (37%), Gaps = 37/249 (14%)
Query: 135 GVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDD 194
G+ G V + S N PE ++ A + I A+ L +I+ + VL+
Sbjct: 45 GLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHLTAPEADYIVGDSGARVLVA-- 102
Query: 195 DSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPK 254
+ +D K+ + +R++ EI F E A P
Sbjct: 103 ----SAALDGL---AAKVGADLPLRLSF-------GGEIDGFGSFEAALAGAG----PRL 144
Query: 255 PTDLC--TICYTSGTTGNPKGV--------MLTHGNVIAAISAALLQLSDHRPKYSDVLI 304
C + Y+SGTTG PKG+ + G+ I AI+ A +S+ SD+
Sbjct: 145 TEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISE-----SDIYY 199
Query: 305 SFLPLAHMLE-RTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDK 363
S P+ H R C L G + D + ++ + T+ VP + R+ K
Sbjct: 200 SSAPIYHAAPLRWCSMVHALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLL-K 258
Query: 364 VMAQIRPSF 372
+ A +R +
Sbjct: 259 LDADVRTRY 267
>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. Fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified in
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes an uncharacterized
subgroup of FACS.
Length = 509
Score = 39.7 bits (92), Expect = 0.002
Identities = 45/209 (21%), Positives = 79/209 (37%), Gaps = 24/209 (11%)
Query: 109 SRPYQWIHY--NQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMII 166
+ + RAR GL LGV G V N + ++
Sbjct: 17 LHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVL 76
Query: 167 VALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRA 226
L P A+I+N AE VL+ D + ++ + E ++
Sbjct: 77 HTANPRLSPKEIAYILNHAEDKVLLFDPN----------------LLPLVEAIRGELKTV 120
Query: 227 RSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLC---TICYTSGTTGNPKGVMLTH-GNVI 282
+ + + E + + EE P + YT+GTTG PKGV+ +H V+
Sbjct: 121 QHFVVMDEKAPEGYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVL 180
Query: 283 AAISAALLQLSDHRPKYSDVLISFLPLAH 311
+++A+L+ + K DV++ +P+ H
Sbjct: 181 HSLAASLVDGTALSEK--DVVLPVVPMFH 207
>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional.
Length = 612
Score = 39.7 bits (93), Expect = 0.003
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 15/91 (16%)
Query: 227 RSRAIEIIRFDEI-ERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTH----GNV 281
R R +I D I + G F V D+ + YTSG+T P GV +TH N+
Sbjct: 165 RLRRPRVIAIDAIPDSAGE--SFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNL 222
Query: 282 IAAI-SAALLQLSDHRPKYSDVLISFLPLAH 311
+ I S LL + H +S+LPL H
Sbjct: 223 VQMILSIDLLDRNTHG-------VSWLPLYH 246
>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated.
Length = 549
Score = 39.1 bits (92), Expect = 0.003
Identities = 54/250 (21%), Positives = 92/250 (36%), Gaps = 19/250 (7%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDT-LGP 175
Y + ++ GLL LGV G V + ++N + A + L +T
Sbjct: 77 YAELDEQSNALARGLLALGVRAGDGVAVLARN-HRGFVLALYAAGKVGARIILLNTGFSG 135
Query: 176 DACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIR 235
A + + + L+ DD+ ++ P L ++ +
Sbjct: 136 PQLAEVAAREGVKALVYDDEF--TDLLSALPPDLGRLRAWGGNPDDD----EPSGSTDET 189
Query: 236 FDE-IERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSD 294
D+ I + PPKP + + TSGTTG PKG + +A + A LL
Sbjct: 190 LDDLIAGSSTAPL--PKPPKPGGI--VILTSGTTGTPKGAPRPEPSPLAPL-AGLL---S 241
Query: 295 HRP-KYSDVLISFLPLAHMLERTCES-AMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPA 352
P + + + P+ H + AM L + D + ED+ K T +
Sbjct: 242 RVPFRAGETTLLPAPMFHATGWAHLTLAMALGSTVVLRRRFDPEATLEDIAKHKATALVV 301
Query: 353 VPRLLNRMYD 362
VP +L+R+ D
Sbjct: 302 VPVMLSRILD 311
>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 358
Score = 38.9 bits (91), Expect = 0.004
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 264 TSGTTGNPKGVMLTHGNVIAAISA 287
TSGTTG PKG MLT + A+ A
Sbjct: 43 TSGTTGTPKGAMLTAAALTASADA 66
>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.
Length = 637
Score = 38.6 bits (91), Expect = 0.006
Identities = 57/214 (26%), Positives = 77/214 (35%), Gaps = 77/214 (35%)
Query: 115 IHYNQALLRARN-FGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTL 173
I Y + L R F + L LGV G V IY P MI A L
Sbjct: 99 ITYRE-LHREVCRFANALKSLGVKKGDRVAIY---MP-------------MIPEAAVAML 141
Query: 174 GPDACAFI-------------------INQAEISVLIVDDDS---------KCNQIIDRA 205
ACA I I A ++I D+ K +D A
Sbjct: 142 ---ACARIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLK--ANVDEA 196
Query: 206 ---PRCLKKIISIR----EVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTD- 257
++K+I +R +V R + + E+ V +E P+P D
Sbjct: 197 LANCPSVEKVIVVRRTGGDV---DWVEGRD-----LWWHEL--VAGAS--DECEPEPMDA 244
Query: 258 ---LCTICYTSGTTGNPKGVMLTHG--NVIAAIS 286
L I YTSG+TG PKGV+ T G V AA++
Sbjct: 245 EDPL-FILYTSGSTGKPKGVLHTTGGYLVYAAMT 277
>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 365
Score = 38.0 bits (89), Expect = 0.006
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 261 ICYTSGTTGNPKGVMLTHGNVIAA 284
+ YT GTTG PKGVM ++
Sbjct: 8 MLYTGGTTGMPKGVMWRQEDIFRV 31
>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP),
including FATP4 and FATP1, and similar proteins. Fatty
acid transport protein (FATP) transports long-chain or
very-long-chain fatty acids across the plasma membrane.
At least five copies of FATPs are identified in
mammalian cells. This family includes FATP4, FATP1, and
homologous proteins. Each FATP has unique patterns of
tissue distribution. FATP4 is mainly expressed in the
brain, testis, colon and kidney. FATPs also have fatty
acid CoA synthetase activity, thus playing dual roles as
fatty acid transporters and its activation enzymes.
FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis.
Length = 474
Score = 38.2 bits (89), Expect = 0.007
Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 14/71 (19%)
Query: 249 EEVPPKPTD------LCTICYTSGTTGNPKGVMLTHGNV--IAAISAALLQLSDHRPKYS 300
PP D L I YTSGTTG PK ++ H IAA + +
Sbjct: 92 STEPPSQDDVNFRDKLFYI-YTSGTTGLPKAAVIVHSRYYRIAAGAYYAFGMRP-----E 145
Query: 301 DVLISFLPLAH 311
DV+ LPL H
Sbjct: 146 DVVYDCLPLYH 156
>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 458
Score = 37.9 bits (89), Expect = 0.008
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 250 EVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAA-LLQLSDHRPKYSDVLISFLP 308
V +P L T+ TSG+TG PK + T +A SA +L L + L+S LP
Sbjct: 129 AVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLA--SAEGVLSLMPFTAQ-DSWLLS-LP 184
Query: 309 LAH 311
L H
Sbjct: 185 LFH 187
>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase. Proteins
in this family belong to the AMP-binding enzyme family
(pfam00501). Members activate 2,3-dihydroxybenzoate
(DHB) by ligation of AMP from ATP with the release of
pyrophosphate; many are involved in synthesis of
siderophores such as enterobactin, vibriobactin,
vulnibactin, etc. The most closely related proteine
believed to differ in function activates salicylate
rather than DHB [Transport and binding proteins, Cations
and iron carrying compounds].
Length = 526
Score = 37.5 bits (87), Expect = 0.011
Identities = 55/255 (21%), Positives = 95/255 (37%), Gaps = 33/255 (12%)
Query: 83 KTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFV 142
K L D R A + + I QW Y + RA N +GL LG+ G
Sbjct: 23 KPLTDILRDQAARYPDAIAI-----ICGNRQW-SYRELDQRADNLAAGLTKLGIKQGDTA 76
Query: 143 GIYSQNCPEWIIT-----EQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSK 197
+ N E+ I + G ++AL+ + A+ +Q E ++ I+D
Sbjct: 77 VVQLPNIAEFYIVFFALLKLGV----APVLALFSHRKSELTAY-ASQIEPALYIIDRAHS 131
Query: 198 CNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTD 257
D A + K+ ++R + +A + E F +E F +
Sbjct: 132 LFDYDDFARQLQSKLPTLRNIIVA------GQTGEAELFLWLESPAEPVKFPPTK--SDE 183
Query: 258 LCTICYTSGTTGNPKGVMLTHGNVIAAI--SAALLQLSDHRPKYSDVLISFLPLAHMLER 315
+ + G+TG PK + TH + ++ S + L + +Y + LP AH
Sbjct: 184 VAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWL-TQQTRY----LCALPAAHNYPL 238
Query: 316 TCESAM--FLVGGSI 328
+ A+ F GG +
Sbjct: 239 SSPGALGVFYAGGCV 253
>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE). PrpE catalyzes the
first step of the 2-methylcitric acid cycle for
propionate catabolism. It activates propionate to
propionyl-CoA in a two-step reaction, which proceeds
through a propionyl-AMP intermediate and requires ATP
and Mg2+. In Salmonella enterica, the PrpE protein is
required for growth of S. enterica on propionate and can
substitute for the acetyl-CoA synthetase (Acs) enzyme
during growth on acetate. PrpE can also activate
acetate, 3HP, and butyrate to their corresponding
CoA-thioesters, although with less efficiency.
Length = 607
Score = 36.9 bits (86), Expect = 0.019
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 251 VPPKPTDLCTICYTSGTTGNPKGVMLTHG 279
VP + TD I YTSGTTG PKGV+ G
Sbjct: 215 VPVESTDPLYILYTSGTTGKPKGVVRDTG 243
>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase. This family
contains one of three readily separable clades of
proteins in the group of acetate and propionate--CoA
ligases. Characterized members of this family act on
propionate. From propionyl-CoA, there is a cyclic
degradation pathway: it is ligated by PrpC to the TCA
cycle intermediate oxaloacetate, acted upon further by
PrpD and an aconitase, then cleaved by PrpB to pyruvate
and the TCA cycle intermediate succinate.
Length = 628
Score = 36.4 bits (84), Expect = 0.023
Identities = 39/178 (21%), Positives = 61/178 (34%), Gaps = 23/178 (12%)
Query: 127 FGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAE 186
F S L LGV G V IY E + I ++ + A I+ A
Sbjct: 96 FASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDDAT 155
Query: 187 ISVLIVDD---------------DSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAI 231
+++ D D+ + P L + + +A M+ R +
Sbjct: 156 PKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVL-----LVDRGLAPMRLIPGRDV 210
Query: 232 EIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAAL 289
+ + AQ E + I YTSGTTG PKGV G A++ ++
Sbjct: 211 DYAALRT-QHEDAQVPVEWLESNEPSY--ILYTSGTTGKPKGVQRDVGGYAVALALSM 265
>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional.
Length = 511
Score = 35.8 bits (83), Expect = 0.034
Identities = 35/149 (23%), Positives = 57/149 (38%), Gaps = 28/149 (18%)
Query: 134 LGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVD 193
LG+ G V I+ +N ++ A + + L P A+I++ + LI
Sbjct: 44 LGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLTPAEAAYIVDDSGARALITS 103
Query: 194 DDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIER-VGAQKMFEEVP 252
+D A LK+ +R + + E+E VG + +P
Sbjct: 104 AAK-----LDVARALLKQCPGVRH------------RLVLDGDGELEGFVGYAEAVAGLP 146
Query: 253 PKP-------TDLCTICYTSGTTGNPKGV 274
P TD+ Y+SGTTG PKG+
Sbjct: 147 ATPIADESLGTDML---YSSGTTGRPKGI 172
>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein]
ligase; Validated.
Length = 525
Score = 35.5 bits (82), Expect = 0.041
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 264 TSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAH 311
T+G+TG P+ +L+ G V++ + L +DV S+LPL H
Sbjct: 160 TAGSTGTPRTAILSPGAVLSNL-RGLNARVGLDAA-TDVGCSWLPLYH 205
>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional.
Length = 629
Score = 35.3 bits (82), Expect = 0.049
Identities = 12/14 (85%), Positives = 12/14 (85%)
Query: 261 ICYTSGTTGNPKGV 274
I YTSGTTG PKGV
Sbjct: 238 ILYTSGTTGKPKGV 251
>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional.
Length = 647
Score = 35.1 bits (81), Expect = 0.056
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 237 DEIERV--GAQKMFEE-VPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAI 285
DEI+++ Q F E VP + + I YTSGTTGN K V+ ++G + +
Sbjct: 232 DEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGL 283
>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of
bifunctional fatty acid transporter/very-long-chain
acyl-CoA synthetase in fungi. Fatty acid transport
protein (FATP) transports long-chain or very-long-chain
fatty acids across the plasma membrane. FATPs also have
fatty acid CoA synthetase activity, thus playing dual
roles as fatty acid transporters and its activation
enzymes. FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis. Members of this family are
fungal FATPs, including FAT1 from Cochliobolus
heterostrophus.
Length = 468
Score = 35.1 bits (81), Expect = 0.066
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 1/83 (1%)
Query: 117 YNQALLRARNFGSGLLG-LGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGP 175
Y++ + L G V G FV I + N E++ + + + L
Sbjct: 8 YSETYDLVLRYAHWLHGDRNVQSGDFVAIDTTNSAEFVFLWLALWSIGAVPAFINYNLSG 67
Query: 176 DACAFIINQAEISVLIVDDDSKC 198
D + + +IVD D
Sbjct: 68 DPLIHCLKISGAKFVIVDPDDPA 90
Score = 34.7 bits (80), Expect = 0.070
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 255 PTDLCTICYTSGTTGNPKGVMLTHG 279
P D + YTSGTTG PKG ++
Sbjct: 86 PDDPAALIYTSGTTGLPKGCAISWR 110
>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional.
Length = 579
Score = 34.6 bits (79), Expect = 0.096
Identities = 15/32 (46%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 257 DLCTICYTSGTTGNPKGVMLTH-GNVIAAISA 287
D ++ YTSGTT +PKGV+++H G ++ +SA
Sbjct: 187 DPISLNYTSGTTADPKGVVISHRGAYLSTLSA 218
>gnl|CDD|201700 pfam01270, Glyco_hydro_8, Glycosyl hydrolases family 8.
Length = 325
Score = 33.6 bits (77), Expect = 0.14
Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 17/105 (16%)
Query: 43 YYQSDRSSNLRGRGREVVRVSKFFSGASEGK---FLSTLYDDVKTLYDAFRKGAK---ES 96
++ +S L+ GR + + SEG+ L + + +D + +
Sbjct: 11 AWEQWKSKYLKPDGRVIDTANGNVDTTSEGQGYGMLLAVAAADQAAFDGLWQWTRANLSQ 70
Query: 97 NNGRCLGWRQNISRPYQWIHYNQA----------LLRA-RNFGSG 130
N + WR N S N A LL A + +GSG
Sbjct: 71 TNNGLMAWRYNKSANNPGEDKNSATDGDLDIAWSLLLAGKQWGSG 115
>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 433
Score = 33.5 bits (77), Expect = 0.20
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 237 DEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTH 278
D R + + + + D + +TSGTTG PK V+ TH
Sbjct: 66 DRFSRGKPKAIVAD-ETRADDPILLYFTSGTTGLPKLVLHTH 106
>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase.
Length = 666
Score = 32.9 bits (75), Expect = 0.29
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 263 YTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDV 302
YTSG+TG PKGV+ T G + + D++P +DV
Sbjct: 282 YTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKP--TDV 319
>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional.
Length = 655
Score = 32.8 bits (76), Expect = 0.34
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 261 ICYTSGTTGNPKGVMLTHGNVI 282
I Y+SGTTG PK ++ HG ++
Sbjct: 268 ILYSSGTTGLPKCIVHGHGGIL 289
>gnl|CDD|221727 pfam12706, Lactamase_B_2, Beta-lactamase superfamily domain. This
family is part of the beta-lactamase superfamily and is
related to pfam00753.
Length = 197
Score = 31.7 bits (72), Expect = 0.37
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 7/69 (10%)
Query: 304 ISFLPLAHMLERTCESAMFLV---GGSIGYYSGDIKNLTEDMKTLKP---TIMPAVPRLL 357
I+ P+ H R F + G I YYSGD + + + +K I+ A
Sbjct: 104 ITAFPVQHGSGRYLLREGFRIETPGKKI-YYSGDTGYIPDLLAEIKGADLLILDATFYDD 162
Query: 358 NRMYDKVMA 366
+ K
Sbjct: 163 DEEPRKTAR 171
>gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional.
Length = 728
Score = 31.2 bits (71), Expect = 1.1
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 261 ICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESA 320
I ++SGTTG PK + T + A + A L D R D++ L M+ A
Sbjct: 361 ILFSSGTTGEPKAIPWTQLTPLRAAADAWAHL-DIRK--GDIVCWPTNLGWMMGPWLVYA 417
Query: 321 MFLVGGSIGYYSG 333
L G ++ Y+G
Sbjct: 418 SLLNGATLALYNG 430
>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS)
of AAE_MA like. MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. This family of MACS
enzymes is found in archaea and bacteria. It is
represented by the acyl-adenylating enzyme from
Methanosarcina acetivorans (AAE_MA). AAE_MA is most
active with propionate, butyrate, and the branched
analogs: 2-methyl-propionate, butyrate, and pentanoate.
The specific activity is weaker for smaller or larger
acids.
Length = 537
Score = 31.2 bits (71), Expect = 1.1
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 250 EVPPKPTDLCTICYTSGTTGNPKGVMLTH 278
D+ + +TSGTTG PK M+ H
Sbjct: 179 NDATCNDDILLVYFTSGTTGMPK--MVEH 205
>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional.
Length = 537
Score = 30.5 bits (69), Expect = 1.5
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 249 EEVPPKPTDLCTICYTSGTTGNPKG 273
+ P I TSGTTG PKG
Sbjct: 189 QRPEPTGRKGRVILLTSGTTGTPKG 213
>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated.
Length = 705
Score = 30.0 bits (67), Expect = 2.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 263 YTSGTTGNPKGVMLTHGNVIAAISA 287
YTSGTTG PK + H + + + A
Sbjct: 152 YTSGTTGPPKAAIHRHADPLTFVDA 176
>gnl|CDD|215552 PLN03051, PLN03051, acyl-activating enzyme; Provisional.
Length = 499
Score = 29.8 bits (67), Expect = 3.0
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 261 ICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESA 320
I ++SGTTG PK + TH + + S + D +P DV+ L M+ +
Sbjct: 124 ILFSSGTTGEPKAIPWTHLSPLRCASDGWAHM-DIQP--GDVVCWPTNLGWMMGPWLLYS 180
Query: 321 MFLVGGSIGYYSG 333
FL G ++ Y G
Sbjct: 181 AFLNGATLALYGG 193
>gnl|CDD|188151 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-translocating
P-type ATPase. This model describes the P-type ATPase
responsible for translocating calcium ions across the
plasma membrane of eukaryotes , out of the cell. In some
organisms, this type of pump may also be found in
vacuolar membranes. In humans and mice, at least, there
are multiple isoforms of the PMCA pump with overlapping
but not redundant functions. Accordingly, there are no
human diseases linked to PMCA defects, although
alterations of PMCA function do elicit physiological
effects. The calcium P-type ATPases have been
characterized as Type IIB based on a phylogenetic
analysis which distinguishes this group from the Type
IIA SERCA calcium pump. A separate analysis divides Type
IIA into sub-types (SERCA and PMR1) which are modelled
by TIGR01116 and TIGR01522. This model is well separated
from those.
Length = 944
Score = 29.7 bits (67), Expect = 3.2
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 17 LNNQSEIIRE--QNLALVGT-NETMRLRFYYQSDRSSNLRGRGREVVRVSKFFSGASEGK 73
LN+ SE + + A +G+ E L F R +VV++ F SE K
Sbjct: 429 LNSSSEEVVDRGGKRAFIGSKTECALLDFGLLLLRDYQEVRAEEKVVKIYPF---NSERK 485
Query: 74 FLSTLYDDVKTLYDAFRKGAKESNNGRC 101
F+S + Y FRKGA E C
Sbjct: 486 FMSVVVKHSGGKYREFRKGASEIVLKPC 513
>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase
(MACS or ACSM). MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes. MACS enzymes are localized to
mitochondria. Two murine MACS family proteins are found
in liver and kidney. In rodents, a MACS member is
detected particularly in the olfactory epithelium and is
called O-MACS. O-MACS demonstrates substrate preference
for the fatty acid lengths of C6-C12.
Length = 530
Score = 29.0 bits (65), Expect = 5.2
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 251 VPPKPTDLCTICYTSGTTGNPKGVMLTHG 279
V K + I +TSGTTG PK +H
Sbjct: 169 VKTKSQEPMAIYFTSGTTGFPKMAEHSHS 197
>gnl|CDD|132378 TIGR03335, F390_ftsA, coenzyme F390 synthetase. This enzyme,
characterized in Methanobacterium thermoautotrophicum
and found in several other methanogens, modifies
coenzyme F420 by ligation of AMP (or GMP) from ATP (or
GTP). On F420, it activates an aromatic hydroxyl group,
which is unusual chemistry for an adenylyltransferase.
This enzyme name has been attached to numbers of
uncharacterized genes likely to instead act as
phenylacetate CoA ligase, based on proximity to
predicted indolepyruvate ferredoxin oxidoreductase
(1.2.7.8) genes. The enzyme acts during transient
exposure of the organism to oxygen [Biosynthesis of
cofactors, prosthetic groups, and carriers, Other,
Energy metabolism, Methanogenesis].
Length = 445
Score = 28.7 bits (64), Expect = 5.4
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 10/53 (18%)
Query: 238 EIERVGAQKMFEEVPPKP----------TDLCTICYTSGTTGNPKGVMLTHGN 280
E+ + + + + PP D+ TI TSGT+G PK LT +
Sbjct: 58 ELPVISGEVIRKNQPPVTDDFMFKSADWKDIYTIHETSGTSGTPKSFFLTWDD 110
>gnl|CDD|221653 pfam12588, PSDC, Phophatidylserine decarboxylase. This domain
family is found in bacteria and eukaryotes, and is
approximately 140 amino acids in length. The family is
found in association with pfam02666. Phosphatidylserine
decarboxylase (PSD) is an important enzyme in the
synthesis of phosphatidylethanolamine in both
prokaryotes and eukaryotes.
Length = 141
Score = 27.6 bits (62), Expect = 7.0
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 23/76 (30%)
Query: 232 EIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVM-LTHGNVIAAISAALL 290
++I D + +MF+EVP K Y + +G P V LL
Sbjct: 10 DLIESDPRLYMLFTQMFDEVPEK--------YQADPSGQPLQVRDYDE----------LL 51
Query: 291 QLSDH----RPKYSDV 302
QL +H P+++D
Sbjct: 52 QLLNHILTTAPEFNDH 67
>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase. This enzyme
catalyzes the first step of the mevalonate pathway of
IPP biosynthesis. Most bacteria do not use this pathway,
but rather the deoxyxylulose pathway [Central
intermediary metabolism, Other].
Length = 652
Score = 28.7 bits (64), Expect = 7.1
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 15/95 (15%)
Query: 244 AQKMFEEVP-PKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHR----PK 298
A+ +FE++P P I ++SGTTG PK ++ + G + + L +H
Sbjct: 254 AELVFEQLPFDHPL---WILFSSGTTGLPKCIVHSAGGTL------VQHLKEHGLHCDLG 304
Query: 299 YSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG 333
D L + M+ S + G ++ Y G
Sbjct: 305 PGDRLFYYTTTGWMMWNWLVSGL-ATGATLVLYDG 338
>gnl|CDD|148387 pfam06754, PhnG, Phosphonate metabolism protein PhnG. This family
consists of several bacterial phosphonate metabolism
protein PhnG sequences. In Escherichia coli, the phn
operon encodes proteins responsible for the uptake and
breakdown of phosphonates. The exact function of PhnG is
unknown, however it is thought likely that along with
six other proteins PhnG makes up the the C-P
(carbon-phosphorus) lyase.
Length = 147
Score = 27.5 bits (62), Expect = 7.5
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 19/61 (31%)
Query: 259 CTICYTSGTTGNPKGVMLTHGNV---------IAAISAALLQLSDHRPKYSDVLISFLPL 309
+ SGT G H V +AA+ ALLQ DH + +I+ PL
Sbjct: 68 AAVRLASGTVG--------HSYVLGRDKRHAELAALIDALLQDPDHAARLEAAVIA--PL 117
Query: 310 A 310
A
Sbjct: 118 A 118
>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily. This
subfamily of the AAA family ATPases includes two members
each from three archaeal species. It also includes yeast
CDC48 (cell division control protein 48) and the human
ortholog, transitional endoplasmic reticulum ATPase
(valosin-containing protein). These proteins in
eukaryotes are involved in the budding and transfer of
membrane from the transitional endoplasmic reticulum to
the Golgi apparatus.
Length = 733
Score = 28.3 bits (63), Expect = 7.9
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 192 VDDDSKCNQIIDRAPRCLKKII-----SIREVRMATMQRARSRAIEIIRFDEIERVGAQK 246
V +S N I R P L K + +IRE+ ++AR A II FDEI+ + +
Sbjct: 507 VATESGANFIAVRGPEILSKWVGESEKAIREI----FRKARQAAPAIIFFDEIDAIAPAR 562
>gnl|CDD|213360 cd12826, EcCorA_ZntB-like_u1, uncharacterized bacterial subfamily
of the Escherichia coli CorA-Salmonella typhimurium ZntB
family. A uncharacterized subfamily of the Escherichia
coli CorA-Salmonella typhimurium ZntB (EcCorA-ZntB_like)
family of the MIT superfamily of essential membrane
proteins involved in transporting divalent cations
(uptake or efflux) across membranes. The
EcCorA-ZntB_like family includes the Mg2+ transporters
Escherichia coli and Salmonella typhimurium CorAs, which
can also transport Co2+, and Ni2+. Structures of the
intracellular domain of EcCorA-ZntB_like family members,
Vibrio parahaemolyticus and Salmonella typhimurium ZntB,
form funnel-shaped homopentamers, the tip of the funnel
is formed from two C-terminal transmembrane (TM) helices
from each monomer, and the large opening of the funnel
from the N-terminal cytoplasmic domains. The GMN
signature motif of the MIT superfamily occurs just after
TM1, mutation within this motif is known to abolish Mg2+
transport through Salmonella typhimurium CorA. Natural
variants such as GVN and GIN, as in some ZntB family
proteins, may be associated with the transport of
different divalent cations, such as zinc and cadmium.
The functional diversity of MIT transporters may also be
due to minor structural differences regulating gating,
substrate selection, and transport.
Length = 281
Score = 27.9 bits (63), Expect = 8.2
Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Query: 157 QGAYCYSMIIVALYDTLG-PDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISI 215
+ + I D LG D F I + + + +DDD ++++R I
Sbjct: 38 EDCLGGTFGIPDKLDVLGKRDRFGFYITKNRL--VFIDDDGFVLKLLER-------IQEK 88
Query: 216 REVRMATMQR 225
+ + +++R
Sbjct: 89 KSWKGPSLER 98
>gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde
dehydrogenase. Members of this protein family are
L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31),
product of the LYS2 gene. It is also called
alpha-aminoadipate reductase. In fungi, lysine is
synthesized via aminoadipate. Currently, all members of
this family are fungal.
Length = 1389
Score = 28.5 bits (64), Expect = 8.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 260 TICYTSGTTGNPKGVMLTH 278
T+ +TSG+ G PKGV+ H
Sbjct: 419 TLSFTSGSEGIPKGVLGRH 437
>gnl|CDD|227076 COG4733, COG4733, Phage-related protein, tail component [Function
unknown].
Length = 952
Score = 28.2 bits (63), Expect = 9.1
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 113 QWIHYNQALLRARNFGSGLLGLGVNPGSFVGI 144
W L +F +G G PG + +
Sbjct: 443 PWALLTSTLETTVDFPTGPDGFKATPGGIISV 474
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.407
Gapped
Lambda K H
0.267 0.0634 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,247,579
Number of extensions: 1985714
Number of successful extensions: 1989
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1882
Number of HSP's successfully gapped: 219
Length of query: 391
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 292
Effective length of database: 6,546,556
Effective search space: 1911594352
Effective search space used: 1911594352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.1 bits)