RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2417
(391 letters)
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 151 bits (382), Expect = 4e-41
Identities = 51/312 (16%), Positives = 103/312 (33%), Gaps = 15/312 (4%)
Query: 86 YDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIY 145
+ + +E+ + + W + + + I Y + F + LL LG+ G V IY
Sbjct: 75 ANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIY 134
Query: 146 SQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRA 205
PE + + ++ P+A A I + ++I D+
Sbjct: 135 MPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPL 194
Query: 206 PRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPP-------KPTDL 258
+ + + V R I + E + + + E+ P D
Sbjct: 195 KKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDP 254
Query: 259 CTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCE 318
I YTSG+TG PKGV+ T G + + + D+ P D+ + + +
Sbjct: 255 LFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHP--GDIYWCTADVGWVTGHSYL 312
Query: 319 -SAMFLVGGSIGYYSG-----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSF 372
G + + G + + + + I+ P + + + I +
Sbjct: 313 LYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTD 372
Query: 373 IKRLMFNMAMGS 384
L ++G
Sbjct: 373 RSSLRILGSVGE 384
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 124 bits (311), Expect = 7e-32
Identities = 64/310 (20%), Positives = 102/310 (32%), Gaps = 23/310 (7%)
Query: 74 FLSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLG 133
F ST+ D+ L+D + A + Y + RAR GL
Sbjct: 2 FPSTMMDEELNLWDFLERAAALFGRKEVVSRLHT--GEVHRTTYAEVYQRARRLMGGLRA 59
Query: 134 LGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVD 193
LGV G V N + ++ L P A+I+N AE VL+ D
Sbjct: 60 LGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFD 119
Query: 194 DD--SKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEV 251
+ I ++ + + + E + V
Sbjct: 120 PNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEE---------------ADPV 164
Query: 252 PPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAH 311
C + YT+GTTG PKGV+ +H ++ S A + DV++ +P+ H
Sbjct: 165 RVPERAACGMAYTTGTTGLPKGVVYSHRALVLH-SLAASLVDGTALSEKDVVLPVVPMFH 223
Query: 312 MLERTCESAMFLVGGSIGYYSG--DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM-AQI 368
+ A LVG D +L E T VP + + D +
Sbjct: 224 VNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGH 283
Query: 369 RPSFIKRLMF 378
R ++RL+
Sbjct: 284 RLKTLRRLVV 293
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 121 bits (305), Expect = 7e-31
Identities = 55/312 (17%), Positives = 100/312 (32%), Gaps = 15/312 (4%)
Query: 86 YDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLL-GLGVNPGSFVGI 144
Y+ + A ++ N + + + + I Y + L L +GV G V +
Sbjct: 62 YNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAV 121
Query: 145 YSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDS-KCNQIID 203
Y PE IIT I ++ ++ IN + V+I D+S + ++I+
Sbjct: 122 YMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIE 181
Query: 204 RAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEI-----ERVGAQKMFEEVPPKPTDL 258
+ VR + R + E+ + + P D
Sbjct: 182 TKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDP 241
Query: 259 CTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCE 318
+ YTSG+TG PKGV + + + D DV + + + T
Sbjct: 242 LFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQ--EDVFFTAGDIGWITGHTYV 299
Query: 319 SAMFLVGGSIGYYSG------DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSF 372
L+ G + + + K T P L + + I
Sbjct: 300 VYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHS 359
Query: 373 IKRLMFNMAMGS 384
+K L ++G
Sbjct: 360 LKSLRCLGSVGE 371
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 98.8 bits (245), Expect = 3e-23
Identities = 39/255 (15%), Positives = 78/255 (30%), Gaps = 3/255 (1%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPD 176
Y + + + G+N + + S+N ++ + GA + + D
Sbjct: 50 YAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNER 109
Query: 177 ACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRF 236
+N ++ +V+ V I + L I I + T + +
Sbjct: 110 ELLNSMNISQPTVVFVSKKGLQK--ILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTS 167
Query: 237 DEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHR 296
E + + I +SG+TG PKGV L H S A + ++
Sbjct: 168 HLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQ 227
Query: 297 PKYSDVLISFLPLAHMLERTCESAMFLVGGS-IGYYSGDIKNLTEDMKTLKPTIMPAVPR 355
++S +P H + G + Y + + ++ K VP
Sbjct: 228 IIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPT 287
Query: 356 LLNRMYDKVMAQIRP 370
L + +
Sbjct: 288 LFSFFAKSTLIDKYD 302
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
sp. [TaxId: 512]}
Length = 503
Score = 95.9 bits (237), Expect = 4e-22
Identities = 44/302 (14%), Positives = 96/302 (31%), Gaps = 28/302 (9%)
Query: 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSF 141
++T+ + R+ A + + L + + + R + L G+ P
Sbjct: 1 MQTVNEMLRRAATRAPDHCALAVPAR----GLRLTHAELRARVEAVAARLHADGLRPQQR 56
Query: 142 VGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQI 201
V + + N + +I + + L L A +I + E++ ++ +
Sbjct: 57 VAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADA 116
Query: 202 IDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTI 261
I ++ + I VR E E+ +P I
Sbjct: 117 IFQSGSGARIIFLGDLVRDG------------------EPYSYGPPIEDPQREPAQPAFI 158
Query: 262 CYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAM 321
YTSGTTG PK ++ + + Q+ ++ +V++ +PL H++
Sbjct: 159 FYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRH-NVVLGLMPLYHVVGFFAVLVA 217
Query: 322 FLVGGSI-----GYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRL 376
L + D L + + P L + ++ ++ +
Sbjct: 218 ALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHV 277
Query: 377 MF 378
F
Sbjct: 278 TF 279
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 91.5 bits (226), Expect = 9e-21
Identities = 50/309 (16%), Positives = 93/309 (30%), Gaps = 34/309 (11%)
Query: 79 YDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNP 138
Y KT++ F + + N + + + Y++ ++A + G+
Sbjct: 19 YPRDKTIHQLFEEQVSKRPNNVAIVCEN------EQLTYHELNVKANQLARIFIEKGIGK 72
Query: 139 GSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKC 198
+ VGI + + I V + + +I++ ++ +L+
Sbjct: 73 DTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKH--- 129
Query: 199 NQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDL 258
+ + ++ F+E + VP K TDL
Sbjct: 130 ---------------------LVHLIHNIQFNGQVEIFEEDTIKIREGTNLHVPSKSTDL 168
Query: 259 CTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCE 318
+ YTSGTTGNPKG ML H + + D + F ++
Sbjct: 169 AYVIYTSGTTGNPKGTMLEHKGISNLKVF---FENSLNVTEKDRIGQFASISFDASVWEM 225
Query: 319 SAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMF 378
L G S+ D N + V L + R I+ L+
Sbjct: 226 FMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVH-LDPERILSIQTLIT 284
Query: 379 NMAMGSKEN 387
+ S
Sbjct: 285 AGSATSPSL 293
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
subtilis [TaxId: 1423]}
Length = 536
Score = 84.3 bits (207), Expect = 3e-18
Identities = 37/250 (14%), Positives = 79/250 (31%), Gaps = 19/250 (7%)
Query: 83 KTLYDAFRKGAKESNNGRCL-GWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSF 141
+T D R A + + + + S Y + RA +G LG+
Sbjct: 25 ETFGDLLRDRAAKYGDRIAITCGNTHWS-------YRELDTRADRLAAGFQKLGIQQKDR 77
Query: 142 VGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQI 201
V + N E+ + + V + + AE + I+ D
Sbjct: 78 VVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDY 137
Query: 202 IDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTI 261
A + K+ +++ + +A E F +E + + + K +D+ +
Sbjct: 138 RSLARQVQSKLPTLKNIIVAG---------EAEEFLPLEDLHTEP-VKLPEVKSSDVAFL 187
Query: 262 CYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAM 321
+ G+TG K + TH + I +++ + + + L +
Sbjct: 188 QLSGGSTGLSKLIPRTHDDYI-YSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGV 246
Query: 322 FLVGGSIGYY 331
GG +
Sbjct: 247 LYAGGRVVLS 256
>d1kyha_ c.72.1.4 (A:) Hypothetical protein YxkO {Bacillus subtilis
[TaxId: 1423]}
Length = 275
Score = 28.3 bits (62), Expect = 1.5
Identities = 24/183 (13%), Positives = 47/183 (25%), Gaps = 14/183 (7%)
Query: 120 ALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQG-------AYCYSMIIVALYDT 172
A L A G G L +G + + + PE G + +A+
Sbjct: 45 AGLGAMRSGLGKLVIGT-SENVIPLIVPVLPEATYWRDGWKKAADAQLEETYRAIAIGPG 103
Query: 173 LG--PDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRA 230
L + + ++ D + I++ M
Sbjct: 104 LPQTESVQQAVDHVLTADCPVILDAGALAKRTYPKREG-PVILTPHPGEFFRMTGVPVNE 162
Query: 231 IEIIRFDEIERVGAQKMFEEVPPKPTDLCTIC---YTSGTTGNPKGVMLTHGNVIAAISA 287
++ R + + AQ V + TGN G+ + +
Sbjct: 163 LQKKRAEYAKEWAAQLQTVIVLKGNQTVIAFPDGDCWLNPTGNGALAKGGTGDTLTGMIL 222
Query: 288 ALL 290
+L
Sbjct: 223 GML 225
>d1tu7a1 a.45.1.1 (A:78-208) Class pi GST {Onchocerca volvulus
[TaxId: 6282]}
Length = 131
Score = 27.3 bits (60), Expect = 1.5
Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 2/73 (2%)
Query: 296 RPKYSDVLISFLP-LAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVP 354
P +L L +L ++G I Y + + + L P + P
Sbjct: 37 DPYIKSILPGELAKFEKLLATRGNGRNLILGDKISYADYALFEELDVHQILDPHCLDKFP 96
Query: 355 RLLNRMYDKVMAQ 367
L + ++ +
Sbjct: 97 L-LKVFHQRMKDR 108
>d2a2ra1 a.45.1.1 (A:78-209) Class pi GST {Human (Homo sapiens)
[TaxId: 9606]}
Length = 132
Score = 26.7 bits (58), Expect = 3.2
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 306 FLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM 365
P +L + F+VG I + ++ +L + L P + A P L+ ++
Sbjct: 49 LKPFETLLSQNQGGKTFIVGDQISFADYNLLDLLLIHEVLAPGCLDAFPL-LSAYVGRLS 107
Query: 366 AQIRPSFIKRLM 377
A RP +K +
Sbjct: 108 A--RPK-LKAFL 116
>d1oe4a_ c.18.1.3 (A:) Single-strand selective monofunctional
uracil-DNA glycosylase SMUG1 {African clawed frog
(Xenopus laevis) [TaxId: 8355]}
Length = 245
Score = 27.1 bits (60), Expect = 3.4
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 112 YQWIHYNQALLRARNFGSGLLGLGVNPGSF 141
Y W + + +L LG+NPG F
Sbjct: 36 YAWAPHENYVQTYCKSKKEVLFLGMNPGPF 65
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.407
Gapped
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,490,324
Number of extensions: 70564
Number of successful extensions: 228
Number of sequences better than 10.0: 1
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 15
Length of query: 391
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 304
Effective length of database: 1,213,086
Effective search space: 368778144
Effective search space used: 368778144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)