Query psy2420
Match_columns 174
No_of_seqs 120 out of 1065
Neff 8.6
Searched_HMMs 29240
Date Sat Aug 17 00:31:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2420.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2420hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mdb_A 2,3-dihydroxybenzoate-A 99.9 9.1E-26 3.1E-30 192.4 10.3 130 2-164 406-538 (539)
2 1t5h_X 4-chlorobenzoyl COA lig 99.9 9E-24 3.1E-28 178.6 9.7 122 2-156 378-503 (504)
3 2d1s_A Luciferase, luciferin 4 99.9 4E-24 1.4E-28 182.7 7.0 128 2-162 417-548 (548)
4 1pg4_A Acetyl-COA synthetase; 99.9 1.5E-23 5.1E-28 182.6 10.4 130 2-161 493-625 (652)
5 3etc_A AMP-binding protein; ad 99.9 1.1E-23 3.8E-28 181.3 9.2 126 2-157 451-579 (580)
6 4fuq_A Malonyl COA synthetase; 99.9 1.3E-23 4.6E-28 177.7 8.2 123 2-157 375-500 (503)
7 3r44_A Fatty acyl COA syntheta 99.9 7E-24 2.4E-28 180.0 6.4 124 2-159 389-515 (517)
8 3ni2_A 4-coumarate:COA ligase; 99.9 2.3E-23 7.9E-28 177.3 9.3 123 2-157 410-535 (536)
9 1ry2_A Acetyl-coenzyme A synth 99.9 4.1E-23 1.4E-27 180.3 9.0 138 2-162 502-642 (663)
10 3fce_A D-alanine--poly(phospho 99.9 6.8E-23 2.3E-27 173.4 9.2 125 3-157 377-504 (512)
11 3l8c_A D-alanine--poly(phospho 99.9 7.8E-23 2.7E-27 173.2 9.1 130 3-158 380-513 (521)
12 4gs5_A Acyl-COA synthetase (AM 99.9 5.3E-23 1.8E-27 167.6 7.4 122 2-158 227-355 (358)
13 3c5e_A Acyl-coenzyme A synthet 99.9 1.3E-22 4.5E-27 174.2 10.2 128 2-157 432-562 (570)
14 3g7s_A Long-chain-fatty-acid-- 99.9 1.9E-23 6.6E-28 178.3 4.4 123 4-157 417-542 (549)
15 3e7w_A D-alanine--poly(phospho 99.9 2.9E-22 9.8E-27 169.6 10.4 124 4-157 377-503 (511)
16 3ipl_A 2-succinylbenzoate--COA 99.9 8.6E-23 3E-27 172.2 7.1 122 2-158 374-498 (501)
17 1v25_A Long-chain-fatty-acid-C 99.9 9.2E-24 3.2E-28 180.1 0.0 124 2-158 411-537 (541)
18 3rg2_A Enterobactin synthase c 99.9 1.3E-21 4.5E-26 169.2 12.1 128 2-163 410-540 (617)
19 1amu_A GRSA, gramicidin synthe 99.9 1.3E-22 4.4E-27 174.0 5.3 118 3-155 407-527 (563)
20 3o83_A Peptide arylation enzym 99.9 4.1E-23 1.4E-27 176.2 1.7 123 2-157 415-540 (544)
21 4gr5_A Non-ribosomal peptide s 99.9 5.4E-23 1.8E-27 176.4 1.5 119 3-153 446-567 (570)
22 3nyq_A Malonyl-COA ligase; A/B 99.9 4.9E-22 1.7E-26 168.2 7.1 120 2-153 381-504 (505)
23 2v7b_A Benzoate-coenzyme A lig 99.9 2.2E-21 7.6E-26 164.7 10.6 122 2-153 405-528 (529)
24 3ivr_A Putative long-chain-fat 99.8 1.4E-22 4.7E-27 171.4 1.7 123 2-157 374-501 (509)
25 3tsy_A Fusion protein 4-coumar 99.8 1.6E-22 5.3E-27 183.0 1.4 133 2-167 457-592 (979)
26 4dg8_A PA1221; ANL superfamily 99.8 1E-21 3.6E-26 170.3 4.8 118 3-159 396-515 (620)
27 3rix_A Luciferase, luciferin 4 99.8 3.8E-22 1.3E-26 170.3 1.5 126 2-160 415-544 (550)
28 3ite_A SIDN siderophore synthe 99.8 1.7E-21 5.8E-26 166.5 1.4 143 3-166 404-553 (562)
29 3gqw_A Fatty acid AMP ligase; 99.8 3.6E-20 1.2E-24 158.1 9.2 134 3-167 439-573 (576)
30 2vsq_A Surfactin synthetase su 99.8 6.2E-20 2.1E-24 170.2 6.6 118 3-155 838-958 (1304)
31 3kxw_A Saframycin MX1 syntheta 99.7 1.3E-18 4.6E-23 149.0 6.8 125 4-157 437-567 (590)
32 2y4o_A Phenylacetate-coenzyme 99.7 2.7E-18 9.2E-23 142.8 1.2 122 3-152 306-439 (443)
33 3qov_A Phenylacetate-coenzyme 99.7 1.8E-17 6.3E-22 137.5 4.3 119 3-149 299-429 (436)
34 2y27_A Phenylacetate-coenzyme 99.6 3.2E-17 1.1E-21 136.1 3.1 118 3-149 304-431 (437)
35 3lax_A Phenylacetate-coenzyme 99.4 3.3E-13 1.1E-17 92.0 7.6 98 24-148 1-101 (109)
36 3gxs_A Phenylacetate-coenzyme 99.4 2.9E-12 9.8E-17 87.4 8.2 99 24-149 1-102 (109)
37 4b2g_A GH3-1 auxin conjugating 95.0 0.0093 3.2E-07 51.5 2.3 42 5-48 412-457 (609)
38 4eql_A 4-substituted benzoates 94.8 0.011 3.7E-07 50.9 2.0 43 5-49 400-446 (581)
39 4epl_A Jasmonic acid-amido syn 92.6 0.047 1.6E-06 46.9 2.1 43 5-49 407-453 (581)
40 2cvi_A 75AA long hypothetical 60.8 23 0.00078 21.4 5.3 39 40-79 15-53 (83)
41 2zbc_A 83AA long hypothetical 58.1 22 0.00076 21.2 4.9 39 40-79 15-53 (83)
42 2djw_A Probable transcriptiona 55.7 29 0.00099 21.3 5.2 39 40-79 15-53 (92)
43 1p9y_A Trigger factor, TF; alp 49.0 49 0.0017 21.8 5.8 41 98-159 25-65 (121)
44 2nsc_A Trigger factor, TF; cha 43.3 40 0.0014 21.8 4.5 39 98-157 22-60 (109)
45 3i4p_A Transcriptional regulat 37.3 76 0.0026 21.7 5.5 38 40-78 79-116 (162)
46 2cg4_A Regulatory protein ASNC 36.1 96 0.0033 20.7 5.8 39 40-79 82-120 (152)
47 2dbb_A Putative HTH-type trans 30.6 1.2E+02 0.0041 20.1 5.8 37 41-78 83-120 (151)
48 2cyy_A Putative HTH-type trans 30.5 1.1E+02 0.0038 20.4 5.4 38 40-78 80-117 (151)
49 2p5v_A Transcriptional regulat 28.4 1.4E+02 0.0047 20.2 6.1 38 40-78 85-122 (162)
50 2e1c_A Putative HTH-type trans 27.6 1.3E+02 0.0043 20.9 5.3 38 40-78 100-137 (171)
51 2cfx_A HTH-type transcriptiona 25.1 1.5E+02 0.0052 19.5 6.2 38 40-78 78-115 (144)
52 1eej_A Thiol:disulfide interch 23.6 1.6E+02 0.0055 20.9 5.4 59 11-75 36-96 (216)
53 1smp_I Erwinia chrysanthemi in 23.0 43 0.0015 21.7 1.9 29 2-30 56-85 (101)
54 1t3b_A Thiol:disulfide interch 20.2 1.2E+02 0.0042 21.5 4.1 60 11-76 36-97 (211)
No 1
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=99.93 E-value=9.1e-26 Score=192.43 Aligned_cols=130 Identities=13% Similarity=0.169 Sum_probs=107.9
Q ss_pred CCcccccCCceeeccCCcEEEEccCcCceecCCceeeccHHHHHHHhcCcccceEEEEeeCCC---CcEEEEEEcChHHH
Q psy2420 2 KKFLSKDKNEEIKSESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLK---SYIVAIVVPDVDVV 78 (174)
Q Consensus 2 ~~~~~tgd~~~~~d~~G~l~i~GR~~d~i~~s~G~~V~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~~a~v~~~~~~~ 78 (174)
.+||+|||. |++|+||+|+|+||+||+||. +|++|+|.+||+.|.+||.|.+|+|+|.++. ..++|+|++.....
T Consensus 406 ~g~~~TGDl-g~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~ 483 (539)
T 1mdb_A 406 DGFYRTGDI-VRLTRDGYIVVEGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAP 483 (539)
T ss_dssp TSCEEEEEE-EEECTTSCEEEEEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSCC
T ss_pred CCCeecCce-EEECCCCcEEEeccccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCCCC
Confidence 479999998 999999999999999999996 9999999999999999999999999997644 36788888753210
Q ss_pred HHHHHHcCCCCChhhhcCCHHHHHHHHHHHHHHHHhCCCCCceeeeeEEEecCCCCcCCCccCccccccHHHHHHHHHHH
Q psy2420 79 KCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQNGLLTPNFKMQRAQLKSYFKPQ 158 (174)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~v~~~~~~~~~~~~~~T~tgKv~R~~i~~~y~~~ 158 (174)
+ .+++.+++++..|+.|++|+.|+++++.+ +|++||++|+.+++.|.+.
T Consensus 484 ------------------~-------~~~l~~~l~~~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~ 532 (539)
T 1mdb_A 484 ------------------K-------AAELKAFLRERGLAAYKIPDRVEFVESFP------QTGVGKVSKKALREAISEK 532 (539)
T ss_dssp ------------------C-------HHHHHHHHHHTTCCGGGSCSEEEECSSCC------BCTTSCBCHHHHHHHHHHH
T ss_pred ------------------C-------HHHHHHHHHhCCCCcccCCCEEEEeccCC------CCCCcCEeHHHHHHHHHHH
Confidence 0 03444444333599999999999987654 6999999999999999999
Q ss_pred HHHHhC
Q psy2420 159 IEDLYN 164 (174)
Q Consensus 159 i~~ly~ 164 (174)
|+++|+
T Consensus 533 i~~~y~ 538 (539)
T 1mdb_A 533 LLAGFK 538 (539)
T ss_dssp HHTC--
T ss_pred Hhcccc
Confidence 999997
No 2
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=99.90 E-value=9e-24 Score=178.58 Aligned_cols=122 Identities=20% Similarity=0.292 Sum_probs=102.3
Q ss_pred CCcccccCCceeeccCCcEEEEccCcCceecCCceeeccHHHHHHHhcCcccceEEEEeeCCC---CcEEEEEEcChHHH
Q psy2420 2 KKFLSKDKNEEIKSESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLK---SYIVAIVVPDVDVV 78 (174)
Q Consensus 2 ~~~~~tgd~~~~~d~~G~l~i~GR~~d~i~~s~G~~V~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~~a~v~~~~~~~ 78 (174)
.+||+|||. +++|+||+|+|+||.||+||+ +|++|+|.+||+.|.+||.|.+|+|+|.++. ..++|+|++.++..
T Consensus 378 ~g~~~TGDl-g~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~ 455 (504)
T 1t5h_X 378 DGWYRTSDV-AVWTPEGTVRILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGET 455 (504)
T ss_dssp TTEEEEEEE-EEECTTSCEEEEEEGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCC
T ss_pred CCccccCcE-EEECCCceEEEeCcccCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcC
Confidence 379999998 999999999999999999996 9999999999999999999999999998754 46889999765310
Q ss_pred HHHHHHcCCCCChhhhcCCHHHHHHHHHHHHHHHHhC-CCCCceeeeeEEEecCCCCcCCCccCccccccHHHHHHHHH
Q psy2420 79 KCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQD-GLRNFEQVKDIYLHPDPFSVQNGLLTPNFKMQRAQLKSYFK 156 (174)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~-~l~~~~~p~~v~~~~~~~~~~~~~~T~tgKv~R~~i~~~y~ 156 (174)
. + .+++.+++ +. +|+.|++|++|.++++.+ +|++||++|+.+++.|+
T Consensus 456 ----------------~-~-------~~~l~~~~-~~~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 456 ----------------L-S-------ADALDTFC-RSSELADFKRPKRYFILDQLP------KNALNKVLRRQLVQQVS 503 (504)
T ss_dssp ----------------C-C-------HHHHHHHH-HTSSCCGGGSCSEEEECSCCC------BCTTSCBCHHHHHHHHC
T ss_pred ----------------c-C-------HHHHHHHH-hhccCcccccceEEEEhhhCC------CCCCCCEeHHHHHHHhc
Confidence 0 0 03444555 35 899999999999998754 69999999999998764
No 3
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=99.89 E-value=4e-24 Score=182.66 Aligned_cols=128 Identities=14% Similarity=0.197 Sum_probs=105.0
Q ss_pred CCcccccCCceeeccCCcEEEEccCcCceecCCceeeccHHHHHHHhcCcccceEEEEeeCCC---CcEEEEEEcChHHH
Q psy2420 2 KKFLSKDKNEEIKSESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLK---SYIVAIVVPDVDVV 78 (174)
Q Consensus 2 ~~~~~tgd~~~~~d~~G~l~i~GR~~d~i~~s~G~~V~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~~a~v~~~~~~~ 78 (174)
.+||+|||. +++|++|+|+|+||.||+||+ +|++|+|.+||++|.+||.|.+|+|+|.++. ..++|+|++.++..
T Consensus 417 ~g~~~TGDl-~~~~~dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~ 494 (548)
T 2d1s_A 417 EGWLHTGDI-GYYDEEKHFFIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKN 494 (548)
T ss_dssp TSCEEEEEE-EEECTTCCEEEEEEGGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC
T ss_pred CcEEEccCE-EEEcCCCeEEEeccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCC
Confidence 379999998 999999999999999999997 8999999999999999999999999998643 36788888765310
Q ss_pred HHHHHHcCCCCChhhhcCCHHHHHHHHHHHHHHHHhCCCCCceeee-eEEEecCCCCcCCCccCccccccHHHHHHHHHH
Q psy2420 79 KCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVK-DIYLHPDPFSVQNGLLTPNFKMQRAQLKSYFKP 157 (174)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~-~v~~~~~~~~~~~~~~T~tgKv~R~~i~~~y~~ 157 (174)
. + . +++.+++ +.+|+.|++|+ .|.++++.+ +|++||++|+.+++.|.+
T Consensus 495 ----------------~-~---~----~~l~~~~-~~~l~~~~~p~~~i~~v~~lP------~t~~GKi~r~~L~~~~~~ 543 (548)
T 2d1s_A 495 ----------------M-T---E----KEVMDYV-ASQVSNAKRLRGGVRFVDEVP------KGLTGKIDGRAIREILKK 543 (548)
T ss_dssp ----------------C-C---H----HHHHHHH-HTTSCGGGSCTTCEEECSSCC------BCTTSCBCHHHHHHHHHS
T ss_pred ----------------C-C---H----HHHHHHH-HHhccccccccccEEEccCCC------CCCcchhHHHHHHHHHhh
Confidence 0 0 1 2333444 57899999999 899987654 699999999999999998
Q ss_pred HHHHH
Q psy2420 158 QIEDL 162 (174)
Q Consensus 158 ~i~~l 162 (174)
.|++|
T Consensus 544 ~i~~~ 548 (548)
T 2d1s_A 544 PVAKM 548 (548)
T ss_dssp CC---
T ss_pred hhhcC
Confidence 88765
No 4
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=99.89 E-value=1.5e-23 Score=182.64 Aligned_cols=130 Identities=14% Similarity=0.115 Sum_probs=105.9
Q ss_pred CCcccccCCceeeccCCcEEEEccCcCceecCCceeeccHHHHHHHhcCcccceEEEEeeCCC---CcEEEEEEcChHHH
Q psy2420 2 KKFLSKDKNEEIKSESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLK---SYIVAIVVPDVDVV 78 (174)
Q Consensus 2 ~~~~~tgd~~~~~d~~G~l~i~GR~~d~i~~s~G~~V~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~~a~v~~~~~~~ 78 (174)
.+||+|||. +++|+||+|+|+||+||+||+ +|++|+|.+||++|.+||.|.+|+|+|.++. ..++|+|++.++..
T Consensus 493 ~g~y~TGDl-g~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~ 570 (652)
T 1pg4_A 493 KNMYFSGDG-ARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEE 570 (652)
T ss_dssp TTSEEEEEE-EEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC
T ss_pred CCEEECCcE-EEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCC
Confidence 479999998 999999999999999999998 8999999999999999999999999997643 46899999865310
Q ss_pred HHHHHHcCCCCChhhhcCCHHHHHHHHHHHHHHHHhCCCCCceeeeeEEEecCCCCcCCCccCccccccHHHHHHHHHHH
Q psy2420 79 KCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQNGLLTPNFKMQRAQLKSYFKPQ 158 (174)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~v~~~~~~~~~~~~~~T~tgKv~R~~i~~~y~~~ 158 (174)
.++++.+.|++.+ +..|++|++|+.|+++++.+ +|++||++|+.+++.|...
T Consensus 571 -----------------~~~~~~~~l~~~l-----~~~l~~~~~P~~i~~v~~lP------~T~sGKi~R~~L~~~~~~~ 622 (652)
T 1pg4_A 571 -----------------PSPELYAEVRNWV-----RKEIGPLATPDVLHWTDSLP------KTRSGKIMRRILRKIAAGD 622 (652)
T ss_dssp -----------------CCHHHHHHHHHHH-----HHHTCGGGCCSEEEECSCCC------BCTTSCBCHHHHHHHHHTC
T ss_pred -----------------CCHHHHHHHHHHH-----HHhCCCCcCCeEEEEcCCCC------CCCCccchHHHHHHHHhCC
Confidence 1233344444444 45689999999999988765 6999999999999999876
Q ss_pred HHH
Q psy2420 159 IED 161 (174)
Q Consensus 159 i~~ 161 (174)
|+.
T Consensus 623 ~~~ 625 (652)
T 1pg4_A 623 TSN 625 (652)
T ss_dssp ---
T ss_pred CCC
Confidence 643
No 5
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=99.89 E-value=1.1e-23 Score=181.29 Aligned_cols=126 Identities=17% Similarity=0.184 Sum_probs=87.0
Q ss_pred CCcccccCCceeeccCCcEEEEccCcCceecCCceeeccHHHHHHHhcCcccceEEEEeeCCC---CcEEEEEEcChHHH
Q psy2420 2 KKFLSKDKNEEIKSESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLK---SYIVAIVVPDVDVV 78 (174)
Q Consensus 2 ~~~~~tgd~~~~~d~~G~l~i~GR~~d~i~~s~G~~V~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~~a~v~~~~~~~ 78 (174)
.+||+|||. +++|+||+|+|+||+||+||+ +|++|+|.+||++|.+||.|.+|+|+|.++. ..++|+|++.++..
T Consensus 451 ~gwy~TGDl-g~~d~dG~l~~~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~ 528 (580)
T 3etc_A 451 DGYYHTGDM-AWMDEDGYLWFVGRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYT 528 (580)
T ss_dssp TTEEEEEEE-EEECTTSCEEEEEESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC
T ss_pred CCEEecCcE-EEECCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCC
Confidence 479999998 999999999999999999998 7999999999999999999999999997654 45788888765420
Q ss_pred HHHHHHcCCCCChhhhcCCHHHHHHHHHHHHHHHHhCCCCCceeeeeEEEecCCCCcCCCccCccccccHHHHHHHHHH
Q psy2420 79 KCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQNGLLTPNFKMQRAQLKSYFKP 157 (174)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~v~~~~~~~~~~~~~~T~tgKv~R~~i~~~y~~ 157 (174)
..+.+.+.|++.+ +..|++|++|+.|.++++.+ +|++||++|+.+++.|.+
T Consensus 529 -----------------~~~~~~~~l~~~l-----~~~l~~~~~P~~i~~v~~lP------~t~sGKi~R~~Lr~~~~~ 579 (580)
T 3etc_A 529 -----------------PSDSLKNELQDHV-----KNVTAPYKYPRIIEFVPELP------KTISGKIRRVEIRDKDQS 579 (580)
T ss_dssp -----------------CCHHHHHHHHHHH-----HHHSCGGGCCSEEEEECC--------------------------
T ss_pred -----------------CCHHHHHHHHHHH-----HhhCCCccCCeEEEEeCCCC------CCCCcCCcHHHHHhHhhc
Confidence 1233344444444 35699999999999998755 699999999999998764
No 6
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=99.89 E-value=1.3e-23 Score=177.66 Aligned_cols=123 Identities=20% Similarity=0.204 Sum_probs=102.4
Q ss_pred CCcccccCCceeeccCCcEEEEccCcCceecCCceeeccHHHHHHHhcCcccceEEEEeeCCC---CcEEEEEEcChHHH
Q psy2420 2 KKFLSKDKNEEIKSESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLK---SYIVAIVVPDVDVV 78 (174)
Q Consensus 2 ~~~~~tgd~~~~~d~~G~l~i~GR~~d~i~~s~G~~V~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~~a~v~~~~~~~ 78 (174)
.+||+|||. +++|++|+|+|+||.||+||+ +|++|+|.+||+.|.+||.|.+|+|+|.++. ..++|+|++++...
T Consensus 375 ~g~~~TGDl-~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~ 452 (503)
T 4fuq_A 375 DGFFITGDL-GKIDERGYVHILGRGKDLVIT-GGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGAT 452 (503)
T ss_dssp TSCEEEEEE-EEECTTCEEEECCSSTTCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC
T ss_pred CCCeEccee-EEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCC
Confidence 479999998 999999999999999999997 8999999999999999999999999997643 35788888765310
Q ss_pred HHHHHHcCCCCChhhhcCCHHHHHHHHHHHHHHHHhCCCCCceeeeeEEEecCCCCcCCCccCccccccHHHHHHHHHH
Q psy2420 79 KCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQNGLLTPNFKMQRAQLKSYFKP 157 (174)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~v~~~~~~~~~~~~~~T~tgKv~R~~i~~~y~~ 157 (174)
. + . +++.+.+ +..|+.|++|+.|.++++.+ +|++||++|+.+++.|.+
T Consensus 453 ----------~-------~---~----~~l~~~l-~~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~~ 500 (503)
T 4fuq_A 453 ----------I-------D---E----AQVLHGL-DGQLAKFKMPKKVIFVDDLP------RNTMGKVQKNVLRETYKD 500 (503)
T ss_dssp ----------C-------C---H----HHHHHHH-BTTBCGGGCCSEEEEESCCC------BCTTSCBCHHHHHHHTTT
T ss_pred ----------C-------C---H----HHHHHHH-HhhcccCCCCCEEEEECCCC------CCcccceeHHHHHHHHHH
Confidence 0 0 0 2333333 67899999999999998755 699999999999998864
No 7
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=99.89 E-value=7e-24 Score=179.95 Aligned_cols=124 Identities=20% Similarity=0.283 Sum_probs=99.9
Q ss_pred CCcccccCCceeeccCCcEEEEccCcCceecCCceeeccHHHHHHHhcCcccceEEEEeeCCC---CcEEEEEEcChHHH
Q psy2420 2 KKFLSKDKNEEIKSESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLK---SYIVAIVVPDVDVV 78 (174)
Q Consensus 2 ~~~~~tgd~~~~~d~~G~l~i~GR~~d~i~~s~G~~V~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~~a~v~~~~~~~ 78 (174)
.+||+|||. +++|+||+|+|+||.||+||+ +|++|+|.+||++|.+||.|.+|+|+|.++. ..++|+|+.+....
T Consensus 389 ~g~~~TGDl-~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~~ 466 (517)
T 3r44_A 389 NGWFRTGDI-GEIDDEGYLYIKDRLKDMIIS-GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNEV 466 (517)
T ss_dssp TTEEEEEEE-EEECTTSCEEEEECGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTTC
T ss_pred CCCEeccee-EEEcCCeeEEEecCCcCEEEE-CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECCCCCC
Confidence 379999998 999999999999999999997 8999999999999999999999999997644 24566664332110
Q ss_pred HHHHHHcCCCCChhhhcCCHHHHHHHHHHHHHHHHhCCCCCceeeeeEEEecCCCCcCCCccCccccccHHHHHHHHHHH
Q psy2420 79 KCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQNGLLTPNFKMQRAQLKSYFKPQ 158 (174)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~v~~~~~~~~~~~~~~T~tgKv~R~~i~~~y~~~ 158 (174)
+ . +++.+++ +..|+.|++|+.|.++++.+ +|++||++|+.+++.|.+.
T Consensus 467 ------------------~---~----~~l~~~l-~~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~~~ 514 (517)
T 3r44_A 467 ------------------S---E----QQIVEYC-GTRLARYKLPKKVIFAEAIP------RNPTGKILKTVLREQYSAT 514 (517)
T ss_dssp ------------------C---H----HHHHHHH-HHHSCGGGSCSEEEECSCCC------BCTTCCBCHHHHHHHHGGG
T ss_pred ------------------C---H----HHHHHHH-HHhCCCCCCCCEEEEECCCC------CCCCcCccHHHHHHHHHhh
Confidence 0 0 2333333 35689999999999987754 6999999999999998765
Q ss_pred H
Q psy2420 159 I 159 (174)
Q Consensus 159 i 159 (174)
+
T Consensus 515 ~ 515 (517)
T 3r44_A 515 V 515 (517)
T ss_dssp C
T ss_pred c
Confidence 4
No 8
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=99.89 E-value=2.3e-23 Score=177.35 Aligned_cols=123 Identities=18% Similarity=0.267 Sum_probs=100.4
Q ss_pred CCcccccCCceeeccCCcEEEEccCcCceecCCceeeccHHHHHHHhcCcccceEEEEeeCCC---CcEEEEEEcChHHH
Q psy2420 2 KKFLSKDKNEEIKSESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLK---SYIVAIVVPDVDVV 78 (174)
Q Consensus 2 ~~~~~tgd~~~~~d~~G~l~i~GR~~d~i~~s~G~~V~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~~a~v~~~~~~~ 78 (174)
.+||+|||. +++|+||+|+|+||+||+||+ +|++|+|.+||++|.+||.|.+|+|+|.++. ..++|+|++.+...
T Consensus 410 ~g~~~TGDl-~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~ 487 (536)
T 3ni2_A 410 EGWLHTGDI-GYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQ 487 (536)
T ss_dssp TSCEEEEEE-EEECTTSCEEEEEECSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC
T ss_pred CCceEcccE-EEEcCCceEEEEecccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCC
Confidence 379999998 999999999999999999998 8999999999999999999999999996543 45788888754310
Q ss_pred HHHHHHcCCCCChhhhcCCHHHHHHHHHHHHHHHHhCCCCCceeeeeEEEecCCCCcCCCccCccccccHHHHHHHHHH
Q psy2420 79 KCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQNGLLTPNFKMQRAQLKSYFKP 157 (174)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~v~~~~~~~~~~~~~~T~tgKv~R~~i~~~y~~ 157 (174)
. + . +++.+++ +..|+.|++|+.|.++++.+ +|++||++|+.+++.|+.
T Consensus 488 ----------~-------~---~----~~l~~~l-~~~l~~~~~p~~i~~v~~lP------~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 488 ----------A-------T---E----DEIKQYI-SKQVIFYKRIKRVFFIEAIP------KAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp ----------C-------C---H----HHHHHHH-HTTSCGGGCCSEEEECSCCC------BCTTSCBCHHHHHTC---
T ss_pred ----------C-------C---H----HHHHHHH-HHhccCCccccEEEEEecCC------CCCCCCeeHHHHHHHhcc
Confidence 0 0 1 2344444 57899999999999987755 699999999999988764
No 9
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=99.88 E-value=4.1e-23 Score=180.34 Aligned_cols=138 Identities=20% Similarity=0.188 Sum_probs=102.6
Q ss_pred CCcccccCCceeeccCCcEEEEccCcCceecCCceeeccHHHHHHHhcCcccceEEEEeeCCC---CcEEEEEEcChHHH
Q psy2420 2 KKFLSKDKNEEIKSESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLK---SYIVAIVVPDVDVV 78 (174)
Q Consensus 2 ~~~~~tgd~~~~~d~~G~l~i~GR~~d~i~~s~G~~V~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~~a~v~~~~~~~ 78 (174)
.+||+|||. +++|+||+|+|+||+||+||+ +|++|+|.+||++|.+||.|.+|+|+|.++. ..++|+|++.++..
T Consensus 502 ~g~y~TGDl-g~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~ 579 (663)
T 1ry2_A 502 PGYYFTGDG-AAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSS 579 (663)
T ss_dssp TTSEEEEEE-EEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC----
T ss_pred CCEEEcCCE-EEEcCCCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCc
Confidence 479999998 999999999999999999998 7999999999999999999999999997753 46899999876421
Q ss_pred HHHHHHcCCCCChhhhcCCHHHHHHHHHHHHHHHHhCCCCCceeeeeEEEecCCCCcCCCccCccccccHHHHHHHHHHH
Q psy2420 79 KCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQNGLLTPNFKMQRAQLKSYFKPQ 158 (174)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~v~~~~~~~~~~~~~~T~tgKv~R~~i~~~y~~~ 158 (174)
.... . .+. -.++.+.|++.+ +..|++|++|+.|+++++.+ +|++||++|+.+++.|...
T Consensus 580 ~~~~-------~-~~~--~~~l~~~l~~~l-----~~~L~~~~~P~~i~~v~~lP------~T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 580 WSTA-------T-DDE--LQDIKKHLVFTV-----RKDIGPFAAPKLIILVDDLP------KTRSGKIMRRILRKILAGE 638 (663)
T ss_dssp ------------------CCSHHHHHHHHH-----HHHTCTTTSCSEEEECSCCC------BCTTSCBCHHHHHHSCC--
T ss_pred cccc-------c-chh--HHHHHHHHHHHH-----HHhCCCCcCCeEEEEcCCCC------CCCccCchHHHHHHHHcCC
Confidence 0000 0 000 002333344444 45689999999999998765 6999999999999998876
Q ss_pred HHHH
Q psy2420 159 IEDL 162 (174)
Q Consensus 159 i~~l 162 (174)
++.+
T Consensus 639 ~~~~ 642 (663)
T 1ry2_A 639 SDQL 642 (663)
T ss_dssp ----
T ss_pred CCCC
Confidence 5443
No 10
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=99.88 E-value=6.8e-23 Score=173.37 Aligned_cols=125 Identities=22% Similarity=0.245 Sum_probs=101.9
Q ss_pred CcccccCCceeeccCCcEEEEccCcCceecCCceeeccHHHHHHHhcCcccceEEEEeeCCC---CcEEEEEEcChHHHH
Q psy2420 3 KFLSKDKNEEIKSESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLK---SYIVAIVVPDVDVVK 79 (174)
Q Consensus 3 ~~~~tgd~~~~~d~~G~l~i~GR~~d~i~~s~G~~V~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~~a~v~~~~~~~~ 79 (174)
+||+|||. |++ ++|+|+|+||.||+||+ +|++|+|.+||+.|.++|.|.+|+|+|.++. ..++|+|++......
T Consensus 377 ~~~~TGDl-g~~-~dG~l~i~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~ 453 (512)
T 3fce_A 377 RAYKTGDA-GYV-ENGLLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFE 453 (512)
T ss_dssp EEEEEEEE-EEE-ETTEEEEEEEGGGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCS
T ss_pred EEEeCCce-EEe-cCCEEEEecccCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCcccc
Confidence 59999997 999 79999999999999998 9999999999999999999999999986533 468888887653110
Q ss_pred HHHHHcCCCCChhhhcCCHHHHHHHHHHHHHHHHhCCCCCceeeeeEEEecCCCCcCCCccCccccccHHHHHHHHHH
Q psy2420 80 CKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQNGLLTPNFKMQRAQLKSYFKP 157 (174)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~v~~~~~~~~~~~~~~T~tgKv~R~~i~~~y~~ 157 (174)
....+. +++.+.+ +.+|+.|++|+.|.++++.+ +|++||++|+.+++.|..
T Consensus 454 ----------------~~~~~~----~~l~~~l-~~~L~~~~~P~~~~~~~~lP------~t~~GKi~R~~L~~~~~~ 504 (512)
T 3fce_A 454 ----------------KEFKLT----SAIKKEL-NERLPNYMIPRKFMYQSSIP------MTPNGKVDRKKLLSEVTA 504 (512)
T ss_dssp ----------------SHHHHH----HHHHHHH-HTTSCGGGSCSEEEECSCCC------BCTTSSBCHHHHHHHHHC
T ss_pred ----------------chhhhH----HHHHHHH-HhhCchhcCCeEEEEecccC------CCCCcChHHHHHHhhhhh
Confidence 011222 3444444 58899999999999987754 699999999999998865
No 11
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=99.88 E-value=7.8e-23 Score=173.24 Aligned_cols=130 Identities=16% Similarity=0.099 Sum_probs=97.6
Q ss_pred CcccccCCceeeccCCcEEEEccCcCceecCCceeeccHHHHHHHhcCcccceEEEEeeCCC----CcEEEEEEcChHHH
Q psy2420 3 KFLSKDKNEEIKSESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLK----SYIVAIVVPDVDVV 78 (174)
Q Consensus 3 ~~~~tgd~~~~~d~~G~l~i~GR~~d~i~~s~G~~V~p~~iE~~l~~~~~V~~~~V~g~~~~----~~~~a~v~~~~~~~ 78 (174)
+||+|||. |++|++|+|+|+||+||+||+ +|++|+|.+||+.|.+||.|.+|+|++.++. ..++|+|++.++..
T Consensus 380 ~~~~TGDl-g~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~ 457 (521)
T 3l8c_A 380 PAYHTGDI-GSLTEDNILLYGGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVK 457 (521)
T ss_dssp EEEEEEEE-EEECSSSCEEEEEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSG
T ss_pred eeeeCCCE-EEEeCCCeEEEeCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccc
Confidence 59999998 999999999999999999998 8999999999999999999999999986532 45788888876421
Q ss_pred HHHHHHcCCCCChhhhcCCHHHHHHHHHHHHHHHHhCCCCCceeeeeEEEecCCCCcCCCccCccccccHHHHHHHHHHH
Q psy2420 79 KCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQNGLLTPNFKMQRAQLKSYFKPQ 158 (174)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~v~~~~~~~~~~~~~~T~tgKv~R~~i~~~y~~~ 158 (174)
.. ...... +.+++.+.+ +..|+.|++|+.|.++++.+ +|++||++|+.+++.|.+.
T Consensus 458 ~~-------------~~~~~~----~~~~l~~~l-~~~l~~~~~P~~i~~v~~lP------~t~~GKidr~~L~~~~~~~ 513 (521)
T 3l8c_A 458 ER-------------FDRELE----LTKAIKASV-KDHMMSYMMPSKFLYRDSLP------LTPNGKIDIKTLINEVNNR 513 (521)
T ss_dssp GG-------------CSSHHH----HHHHHHHHS-GGGSCGGGSCSEEEECSSCC------BCTTSSBCHHHHHHHTC--
T ss_pred cc-------------cccchh----hHHHHHHHH-HhhCccccCCeEEEEecccC------CCCCcCccHHHHhhhhhcC
Confidence 10 000011 224455554 57899999999999987755 6999999999999987653
No 12
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.88 E-value=5.3e-23 Score=167.63 Aligned_cols=122 Identities=14% Similarity=0.163 Sum_probs=94.3
Q ss_pred CCcccccCCceeeccCCcEEEEccCcCceecCCceeeccHHHHHHHh---cCcccceEEEE-eeCCC---CcEEEEEEcC
Q psy2420 2 KKFLSKDKNEEIKSESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYS---KSLYVHQIFVY-GESLK---SYIVAIVVPD 74 (174)
Q Consensus 2 ~~~~~tgd~~~~~d~~G~l~i~GR~~d~i~~s~G~~V~p~~iE~~l~---~~~~V~~~~V~-g~~~~---~~~~a~v~~~ 74 (174)
.+||+|||. +++|++| ++++||+||+||+ +|++|+|.+||+.|. +||.|.+|+|+ +.++. ..++|+|++.
T Consensus 227 ~g~~~TGDl-g~~d~~g-~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~ 303 (358)
T 4gs5_A 227 GQTVQTNDL-VEIHGNA-FQWIGRADNVINS-GGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENA 303 (358)
T ss_dssp TCCEEEEEE-EEECSSE-EEEEEEGGGEEEE-TTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESC
T ss_pred CcceecCCc-cccccCc-eEEcccccCeEEE-CCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECC
Confidence 479999998 9999988 6677999999997 899999999998774 68999998776 55433 3577777765
Q ss_pred hHHHHHHHHHcCCCCChhhhcCCHHHHHHHHHHHHHHHHhCCCCCceeeeeEEEecCCCCcCCCccCccccccHHHHHHH
Q psy2420 75 VDVVKCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQNGLLTPNFKMQRAQLKSY 154 (174)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~v~~~~~~~~~~~~~~T~tgKv~R~~i~~~ 154 (174)
... ...+ +|.+++ +.+|+.|++|++|+++++.+ +|++||++|++++++
T Consensus 304 ~~~---------------------~~~~----~l~~~l-~~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~ 351 (358)
T 4gs5_A 304 MPE---------------------ALTE----RLTAEI-RSRVSTYENPKHIYFAKAFA------KTQTDKIDKRATFQK 351 (358)
T ss_dssp CCH---------------------HHHH----HHHHHH-HHHSCGGGSCSCEEEESSCC------BCTTSCBCHHHHHHH
T ss_pred CCC---------------------cCHH----HHHHHH-HhhCCCCCCceEEEEECCcC------CCCCCChhHHHHHHH
Confidence 431 1122 333333 45689999999999998754 699999999999998
Q ss_pred HHHH
Q psy2420 155 FKPQ 158 (174)
Q Consensus 155 y~~~ 158 (174)
|++.
T Consensus 352 l~e~ 355 (358)
T 4gs5_A 352 LSDS 355 (358)
T ss_dssp TC--
T ss_pred hhhh
Confidence 8764
No 13
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=99.88 E-value=1.3e-22 Score=174.21 Aligned_cols=128 Identities=18% Similarity=0.177 Sum_probs=102.8
Q ss_pred CCcccccCCceeeccCCcEEEEccCcCceecCCceeeccHHHHHHHhcCcccceEEEEeeCCC---CcEEEEEEcChHHH
Q psy2420 2 KKFLSKDKNEEIKSESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLK---SYIVAIVVPDVDVV 78 (174)
Q Consensus 2 ~~~~~tgd~~~~~d~~G~l~i~GR~~d~i~~s~G~~V~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~~a~v~~~~~~~ 78 (174)
.+||+|||. +++|++|+|+|+||+||+||. +|++|+|.+||+.|.++|.|.+|+|+|.++. ..++|+|++.+...
T Consensus 432 ~~~~~TGDl-g~~d~dG~l~~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~ 509 (570)
T 3c5e_A 432 GDFWLLGDR-GIKDEDGYFQFMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFL 509 (570)
T ss_dssp TTEEEEEEE-EEECTTSCEEEEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGT
T ss_pred CCcccccee-EEEcCCceEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCccc
Confidence 379999998 999999999999999999996 8999999999999999999999999997643 45788888765421
Q ss_pred HHHHHHcCCCCChhhhcCCHHHHHHHHHHHHHHHHhCCCCCceeeeeEEEecCCCCcCCCccCccccccHHHHHHHHHH
Q psy2420 79 KCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQNGLLTPNFKMQRAQLKSYFKP 157 (174)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~v~~~~~~~~~~~~~~T~tgKv~R~~i~~~y~~ 157 (174)
. ...+.+. ++|.+++ +..|+.|++|+.|.++++.+ +|++||++|+.+++.+..
T Consensus 510 ~---------------~~~~~~~----~~l~~~l-~~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~~ 562 (570)
T 3c5e_A 510 S---------------HDPEQLT----KELQQHV-KSVTAPYKYPRKIEFVLNLP------KTVTGKIQRAKLRDKEWK 562 (570)
T ss_dssp T---------------SCHHHHH----HHHHHHH-HHHSCGGGSCSEEEEESCCC------BCTTCCBCHHHHHHHHTC
T ss_pred C---------------cchHHHH----HHHHHHH-HhhCccccCCcEEEEeccCC------CCCCcCCcHHHHHHHHHh
Confidence 0 0011223 3444444 45699999999999997654 699999999999987643
No 14
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=99.87 E-value=1.9e-23 Score=178.31 Aligned_cols=123 Identities=21% Similarity=0.299 Sum_probs=67.9
Q ss_pred cccccCCceeeccCCcEEEEccCcCceecCCceeeccHHHHHHHhcCcccceEEEEeeCCC---CcEEEEEEcChHHHHH
Q psy2420 4 FLSKDKNEEIKSESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLK---SYIVAIVVPDVDVVKC 80 (174)
Q Consensus 4 ~~~tgd~~~~~d~~G~l~i~GR~~d~i~~s~G~~V~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~~a~v~~~~~~~~~ 80 (174)
||+|||. +++|+||+|+|+||.||+||+ +|++|+|.+||++|.+||.|.+|+|+|.++. ..++|+|++.++...
T Consensus 417 ~~~TGDl-~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~- 493 (549)
T 3g7s_A 417 FFRTGDV-GFIDEEGFLHFQDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRG- 493 (549)
T ss_dssp EEEEEEE-EEECTTSCEEEEEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTTT-
T ss_pred eEccCcE-EEEcCCceEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccC-
Confidence 9999998 999999999999999999997 8999999999999999999999999997754 457888887654100
Q ss_pred HHHHcCCCCChhhhcCCHHHHHHHHHHHHHHHHhCCCCCceeeeeEEEecCCCCcCCCccCccccccHHHHHHHHHH
Q psy2420 81 KALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQNGLLTPNFKMQRAQLKSYFKP 157 (174)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~v~~~~~~~~~~~~~~T~tgKv~R~~i~~~y~~ 157 (174)
.... +++.+++ +.+|+.|++|+.|.++++.+ +|++||++|+.+++++.+
T Consensus 494 -----------------~~~~----~~l~~~l-~~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~~ 542 (549)
T 3g7s_A 494 -----------------KVDE----EDIIEWV-RERISGYKRVREVEFVEELP------RTASGKLLRRLLREKEAE 542 (549)
T ss_dssp -----------------SCCH----HHHHHHH-HTTCC-----CCCCEEEECC------------------------
T ss_pred -----------------cCCH----HHHHHHH-HHhccCcccceEEEEeccCC------CCCCcCEeHHHHHHHhhc
Confidence 0001 3344444 57899999999999987755 699999999999988765
No 15
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=99.87 E-value=2.9e-22 Score=169.61 Aligned_cols=124 Identities=18% Similarity=0.224 Sum_probs=100.7
Q ss_pred cccccCCceeeccCCcEEEEccCcCceecCCceeeccHHHHHHHhcCcccceEEEEeeCCC---CcEEEEEEcChHHHHH
Q psy2420 4 FLSKDKNEEIKSESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLK---SYIVAIVVPDVDVVKC 80 (174)
Q Consensus 4 ~~~tgd~~~~~d~~G~l~i~GR~~d~i~~s~G~~V~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~~a~v~~~~~~~~~ 80 (174)
||+|||. |++ +||+|+|+||.||+||+ +|++|+|.+||++|.+||.|.+|+|+|.++. ..++|+|++.+....
T Consensus 377 ~~~TGDl-g~~-~dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~- 452 (511)
T 3e7w_A 377 AYRTGDA-GFI-QDGQIFCQGRLDFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFE- 452 (511)
T ss_dssp EEEEEEE-EEE-ETTEEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCS-
T ss_pred EEeCCCe-EEc-cCCeEEEEccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEecccccc-
Confidence 7999997 999 59999999999999998 8999999999999999999999999987643 468888887653210
Q ss_pred HHHHcCCCCChhhhcCCHHHHHHHHHHHHHHHHhCCCCCceeeeeEEEecCCCCcCCCccCccccccHHHHHHHHHH
Q psy2420 81 KALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQNGLLTPNFKMQRAQLKSYFKP 157 (174)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~v~~~~~~~~~~~~~~T~tgKv~R~~i~~~y~~ 157 (174)
....+.+.+++.+ +..|+.|++|+.|.++++.+ +|++||++|+.+++.|..
T Consensus 453 ---------------~~~~~~~~l~~~l-----~~~L~~~~~P~~~~~v~~lP------~t~~GKi~R~~L~~~~~~ 503 (511)
T 3e7w_A 453 ---------------KEFQLTSAIKKEL-----AASLPAYMIPRKFIYQDHIQ------MTANGKIDRKRIGEEVLV 503 (511)
T ss_dssp ---------------SHHHHHHHHHHHH-----HHHSCGGGSCSEEEECSCCC------BCTTSCBCHHHHHHHHHH
T ss_pred ---------------chhhHHHHHHHHH-----HhhCchhhCCeeEEEeccCC------CCCCcCccHHHHHhHHhh
Confidence 0122333444444 45699999999999987754 699999999999998875
No 16
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=99.87 E-value=8.6e-23 Score=172.20 Aligned_cols=122 Identities=19% Similarity=0.200 Sum_probs=83.2
Q ss_pred CCcccccCCceeeccCCcEEEEccCcCceecCCceeeccHHHHHHHhcCcccceEEEEeeCCC---CcEEEEEEcChHHH
Q psy2420 2 KKFLSKDKNEEIKSESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLK---SYIVAIVVPDVDVV 78 (174)
Q Consensus 2 ~~~~~tgd~~~~~d~~G~l~i~GR~~d~i~~s~G~~V~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~~a~v~~~~~~~ 78 (174)
.+||+|||. +++|++|+|+|+||.||+||. +|++|+|.+||+.|.+||.|.+|+|+|.++. ..++|++++....
T Consensus 374 ~g~~~TGDl-~~~~~~G~l~~~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~- 450 (501)
T 3ipl_A 374 NGYFNTGDI-AEIDHEGYVMIYDRRKDLIIS-GGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDI- 450 (501)
T ss_dssp TTEEEEEEE-EEECTTSCEEEEEECCCCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC-
T ss_pred CCceecCCE-EEEcCCCeEEEEccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCC-
Confidence 379999998 999999999999999999996 9999999999999999999999999997644 3467777754321
Q ss_pred HHHHHHcCCCCChhhhcCCHHHHHHHHHHHHHHHHhCCCCCceeeeeEEEecCCCCcCCCccCccccccHHHHHHHHHHH
Q psy2420 79 KCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQNGLLTPNFKMQRAQLKSYFKPQ 158 (174)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~v~~~~~~~~~~~~~~T~tgKv~R~~i~~~y~~~ 158 (174)
+ . +++.+++ +..|+.|++|+.|.++++.+ +|++||++|+++++.+.+.
T Consensus 451 ------------------~---~----~~l~~~l-~~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 451 ------------------S---K----AQLIAYL-SKHLAKYKVPKHFEKVDTLP------YTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp ------------------C---H----HHHHHHH-HHHSCGGGSCSEEEECSSCC-------------------------
T ss_pred ------------------C---H----HHHHHHH-HhhCccccCCCEEEEecccC------CCCCCCEeHHHHhhccccc
Confidence 0 1 2233333 35689999999999987755 6999999999999887653
No 17
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=99.87 E-value=9.2e-24 Score=180.10 Aligned_cols=124 Identities=19% Similarity=0.231 Sum_probs=72.9
Q ss_pred CCcccccCCceeeccCCcEEEEccCcCceecCCceeeccHHHHHHHhcCcccceEEEEeeCCC---CcEEEEEEcChHHH
Q psy2420 2 KKFLSKDKNEEIKSESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLK---SYIVAIVVPDVDVV 78 (174)
Q Consensus 2 ~~~~~tgd~~~~~d~~G~l~i~GR~~d~i~~s~G~~V~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~~a~v~~~~~~~ 78 (174)
.+||+|||. |++|++|+|+|+||+||+||. +|++|+|.+||+.|.+||.|.+|+|+|.++. ..++|+|++.....
T Consensus 411 ~g~~~TGDl-g~~d~dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~ 488 (541)
T 1v25_A 411 DGFFRTGDI-AVWDEEGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKP 488 (541)
T ss_dssp TSCEEEEEE-EEECTTCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-------
T ss_pred CCCeEcCCE-EEEcCCceEEEeecccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCCCC
Confidence 479999998 999999999999999999996 9999999999999999999999999997754 36788887652110
Q ss_pred HHHHHHcCCCCChhhhcCCHHHHHHHHHHHHHHHHhCCCCCceeeeeEEEecCCCCcCCCccCccccccHHHHHHHHHHH
Q psy2420 79 KCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQNGLLTPNFKMQRAQLKSYFKPQ 158 (174)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~v~~~~~~~~~~~~~~T~tgKv~R~~i~~~y~~~ 158 (174)
. . +++.+++++.+|+.|++|+.|+++++.+ +|++||++|+.+++.|.+.
T Consensus 489 ~---------------------~----~~l~~~~~~~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~ 537 (541)
T 1v25_A 489 T---------------------P----EELNEHLLKAGFAKWQLPDAYVFAEEIP------RTSAGKFLKRALREQYKNY 537 (541)
T ss_dssp -------------------------------------CCCTTTSCSBC--------------------CCTTHHHHSTTS
T ss_pred C---------------------H----HHHHHHHHhccCccccCCcEEEEeCCCC------CCCccCeeHHHHHHHHHHh
Confidence 0 0 2333333222799999999999987654 6999999999999887543
No 18
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=99.86 E-value=1.3e-21 Score=169.25 Aligned_cols=128 Identities=16% Similarity=0.154 Sum_probs=104.5
Q ss_pred CCcccccCCceeeccCCcEEEEccCcCceecCCceeeccHHHHHHHhcCcccceEEEEeeCCC---CcEEEEEEcChHHH
Q psy2420 2 KKFLSKDKNEEIKSESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLK---SYIVAIVVPDVDVV 78 (174)
Q Consensus 2 ~~~~~tgd~~~~~d~~G~l~i~GR~~d~i~~s~G~~V~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~~a~v~~~~~~~ 78 (174)
.+||+|||. +++++||+|+++||+||+||+ +|++|+|.+||+.|.+||.|.+|+|++.++. ..++|++++.....
T Consensus 410 ~~~yrTGDl-~~~~~dG~l~~~GR~dd~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~ 487 (617)
T 3rg2_A 410 NGFYCSGDL-ISIDPEGYITVQGREKDQINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLR 487 (617)
T ss_dssp TSCEEEEEE-EEECTTSCEEEEEECSSEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCCC
T ss_pred CCceecCce-EEEcCCceEEEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCCCC
Confidence 379999998 999999999999999999997 8999999999999999999999999986543 45788888654210
Q ss_pred HHHHHHcCCCCChhhhcCCHHHHHHHHHHHHHHHHhCCCCCceeeeeEEEecCCCCcCCCccCccccccHHHHHHHHHHH
Q psy2420 79 KCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQNGLLTPNFKMQRAQLKSYFKPQ 158 (174)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~v~~~~~~~~~~~~~~T~tgKv~R~~i~~~y~~~ 158 (174)
. .++.++++...|+.|++|..|.++++.+ +|++||++|+++++.+...
T Consensus 488 ----------------------~----~~l~~~l~~~~lp~~~vP~~~~~v~~lP------~t~~GKidR~~L~~~~~~~ 535 (617)
T 3rg2_A 488 ----------------------A----VQVRRFLREQGIAEFKLPDRVECVDSLP------LTAVGKVDKKQLRQWLASR 535 (617)
T ss_dssp ----------------------H----HHHHHHHHTTTCCGGGSCSEEEECSCCC------BCTTSSBCHHHHHHHHHHH
T ss_pred ----------------------H----HHHHHHHHhCCCccccCCcEEEEecccC------CCCCCCCcHHHHHHHHhcc
Confidence 0 2334444233799999999999987654 6999999999999998877
Q ss_pred HHHHh
Q psy2420 159 IEDLY 163 (174)
Q Consensus 159 i~~ly 163 (174)
...-+
T Consensus 536 ~~~~~ 540 (617)
T 3rg2_A 536 ASAGR 540 (617)
T ss_dssp HHHSS
T ss_pred ccccc
Confidence 65533
No 19
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=99.86 E-value=1.3e-22 Score=174.00 Aligned_cols=118 Identities=19% Similarity=0.247 Sum_probs=97.7
Q ss_pred CcccccCCceeeccCCcEEEEccCcCceecCCceeeccHHHHHHHhcCcccceEEEEeeCCC---CcEEEEEEcChHHHH
Q psy2420 3 KFLSKDKNEEIKSESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLK---SYIVAIVVPDVDVVK 79 (174)
Q Consensus 3 ~~~~tgd~~~~~d~~G~l~i~GR~~d~i~~s~G~~V~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~~a~v~~~~~~~~ 79 (174)
+||+|||. |++|+||+|+|+||+||+||+ +|++|+|.+||+.|.+||.|.+|+|++.++. ..++|+|++....
T Consensus 407 ~w~~TGDl-g~~d~dG~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~-- 482 (563)
T 1amu_A 407 KLYKTGDQ-ARWLSDGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHI-- 482 (563)
T ss_dssp EEEEEEEE-EEECTTSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCC--
T ss_pred EEEecCCE-EEEcCCCeEEEeccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCCC--
Confidence 49999998 999999999999999999998 9999999999999999999999999997643 4688888865321
Q ss_pred HHHHHcCCCCChhhhcCCHHHHHHHHHHHHHHHHhCCCCCceeeeeEEEecCCCCcCCCccCccccccHHHHHHHH
Q psy2420 80 CKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQNGLLTPNFKMQRAQLKSYF 155 (174)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~v~~~~~~~~~~~~~~T~tgKv~R~~i~~~y 155 (174)
+ . ++|.+++ +.+|+.|++|+.|+++++.+ +|++||++|+.+++.+
T Consensus 483 -----------------~---~----~~l~~~l-~~~L~~y~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 483 -----------------P---L----EQLRQFS-SEELPTYMIPSYFIQLDKMP------LTSNGKIDRKQLPEPD 527 (563)
T ss_dssp -----------------C---H----HHHHHHH-HHHSCGGGSCSEEEECSSCC------BCTTSSBCGGGSCCCC
T ss_pred -----------------C---H----HHHHHHH-HhhCchhhCCcEEEEecccC------CCCCcChhHHhcCCcc
Confidence 0 0 2333333 45689999999999987754 6999999999987643
No 20
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=99.86 E-value=4.1e-23 Score=176.23 Aligned_cols=123 Identities=18% Similarity=0.177 Sum_probs=23.8
Q ss_pred CCcccccCCceeeccCCcEEEEccCcCceecCCceeeccHHHHHHHhcCcccceEEEEeeCCC---CcEEEEEEcChHHH
Q psy2420 2 KKFLSKDKNEEIKSESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLK---SYIVAIVVPDVDVV 78 (174)
Q Consensus 2 ~~~~~tgd~~~~~d~~G~l~i~GR~~d~i~~s~G~~V~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~~a~v~~~~~~~ 78 (174)
.+||+|||. +++|++|+|+|+||.||+||. +|++|+|.+||++|.+||.|.+|+|+|.++. ..++|+|++.+...
T Consensus 415 ~g~~~TGDl-g~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~ 492 (544)
T 3o83_A 415 DNYYYSGDL-VQRTPDGNLRVVGRIKDQINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPEL 492 (544)
T ss_dssp TCCEEEEEE-EEECTTSCEEEEEEEC------------------------------------------------------
T ss_pred CCCeEcCCE-EEEcCCCCEEEEeecCCEEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCCC
Confidence 379999998 999999999999999999996 9999999999999999999999999997653 35778887654211
Q ss_pred HHHHHHcCCCCChhhhcCCHHHHHHHHHHHHHHHHhCCCCCceeeeeEEEecCCCCcCCCccCccccccHHHHHHHHHH
Q psy2420 79 KCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQNGLLTPNFKMQRAQLKSYFKP 157 (174)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~v~~~~~~~~~~~~~~T~tgKv~R~~i~~~y~~ 157 (174)
. .+.+.+.++..+|+.|++|+.|.++++.+ +|++||++|+.+++.|.+
T Consensus 493 ~-------------------------~~~l~~~~~~~~l~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~ 540 (544)
T 3o83_A 493 K-------------------------AVVLRRHLMELGIAQYKLPDQIKLIESLP------LTAVGKVDKKQLRSILNT 540 (544)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred C-------------------------HHHHHHHHHhCCCCcccCCcEEEEeccCC------CCCCCCCcHHHHHHHHhh
Confidence 1 02233333223699999999999987654 699999999999988765
No 21
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=99.85 E-value=5.4e-23 Score=176.35 Aligned_cols=119 Identities=18% Similarity=0.213 Sum_probs=21.3
Q ss_pred CcccccCCceeeccCCcEEEEccCcCceecCCceeeccHHHHHHHhcCcccceEEEEeeCCC---CcEEEEEEcChHHHH
Q psy2420 3 KFLSKDKNEEIKSESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLK---SYIVAIVVPDVDVVK 79 (174)
Q Consensus 3 ~~~~tgd~~~~~d~~G~l~i~GR~~d~i~~s~G~~V~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~~a~v~~~~~~~~ 79 (174)
+||+|||. |++|+||+|+|+||+||+||+ +|++|+|.+||++|.+||.|.+|+|+|.++. ..++|+|++......
T Consensus 446 ~w~~TGDl-g~~d~dG~l~~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~ 523 (570)
T 4gr5_A 446 RMYRTGDL-ARRRADGVLEYVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAP 523 (570)
T ss_dssp EEEEEEEE-EEECTTSCEEEEEC---------------------------------------------------------
T ss_pred EEEeCCCe-EEECCCCeEEEEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCC
Confidence 69999998 999999999999999999998 9999999999999999999999999997643 467888876543110
Q ss_pred HHHHHcCCCCChhhhcCCHHHHHHHHHHHHHHHHhCCCCCceeeeeEEEecCCCCcCCCccCccccccHHHHHH
Q psy2420 80 CKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQNGLLTPNFKMQRAQLKS 153 (174)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~v~~~~~~~~~~~~~~T~tgKv~R~~i~~ 153 (174)
... ++|.+++ ++.|+.|++|+.+.++++.+ +|++||++|+++++
T Consensus 524 -------------------~~~----~~l~~~l-~~~l~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~ 567 (570)
T 4gr5_A 524 -------------------PDA----AELRRHV-AEALPAYMVPVECVPVDELP------RTPNGKLDRRALTG 567 (570)
T ss_dssp --------------------------------------------------------------------------
T ss_pred -------------------cCH----HHHHHHH-HhhCccccCCcEEEEcccCC------CCCCcCcchHhhhc
Confidence 001 2333343 46789999999999987654 69999999999875
No 22
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=99.85 E-value=4.9e-22 Score=168.23 Aligned_cols=120 Identities=20% Similarity=0.215 Sum_probs=85.1
Q ss_pred CCcccccCCceeeccCCcEEEEccC-cCceecCCceeeccHHHHHHHhcCcccceEEEEeeCCC---CcEEEEEEcChHH
Q psy2420 2 KKFLSKDKNEEIKSESGALKIIDRK-RHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLK---SYIVAIVVPDVDV 77 (174)
Q Consensus 2 ~~~~~tgd~~~~~d~~G~l~i~GR~-~d~i~~s~G~~V~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~~a~v~~~~~~ 77 (174)
.+||+|||. +++|++|+|+|+||+ +|+||. +|++|+|.+||+.|.++|.|.+|+|+|.++. ..++|+|++....
T Consensus 381 ~g~y~TGDl-~~~~~dG~l~~~GR~~d~~ik~-~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~ 458 (505)
T 3nyq_A 381 DGFFRTGDM-AVRDPDGYVRIVGRKATDLIKS-GGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPA 458 (505)
T ss_dssp TSCEEEEEE-EEECTTSCEEEEEESSCCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTT
T ss_pred CCCCccCCe-EEECCCccEEEeCCccCceEEe-CCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCC
Confidence 479999998 999999999999998 589997 8999999999999999999999999997643 4688999876421
Q ss_pred HHHHHHHcCCCCChhhhcCCHHHHHHHHHHHHHHHHhCCCCCceeeeeEEEecCCCCcCCCccCccccccHHHHHH
Q psy2420 78 VKCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQNGLLTPNFKMQRAQLKS 153 (174)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~v~~~~~~~~~~~~~~T~tgKv~R~~i~~ 153 (174)
. .... +++.+++ +..|++|++|+.|.++++.+ +|++||++|+.+++
T Consensus 459 ~-------------------~~~~----~~l~~~l-~~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 459 A-------------------PPAL----GTLADHV-AARLAPHKRPRVVRYLDAVP------RNDMGKIMKRALNR 504 (505)
T ss_dssp S-------------------CCCH----HHHHHHH-HHHTCGGGSCSEEEECSCCC------C-------------
T ss_pred C-------------------CCCH----HHHHHHH-HhhCCCCcCccEEEEECCCC------CCCCcCeeHHhhcc
Confidence 0 0001 2233333 35689999999999987765 69999999999875
No 23
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=99.85 E-value=2.2e-21 Score=164.67 Aligned_cols=122 Identities=21% Similarity=0.282 Sum_probs=95.7
Q ss_pred CCcccccCCceeeccCCcEEEEccCcCceecCCceeeccHHHHHHHhcCcccceEEEEeeCC--CCcEEEEEEcChHHHH
Q psy2420 2 KKFLSKDKNEEIKSESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESL--KSYIVAIVVPDVDVVK 79 (174)
Q Consensus 2 ~~~~~tgd~~~~~d~~G~l~i~GR~~d~i~~s~G~~V~p~~iE~~l~~~~~V~~~~V~g~~~--~~~~~a~v~~~~~~~~ 79 (174)
.+||+|||. +++|++|+|+|+||.||+||+ +|++|+|.+||+.|.+||.|.+|+|+|... ...++|+|++.++..
T Consensus 405 ~~~~~TGDl-~~~~~~G~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~~- 481 (529)
T 2v7b_A 405 GEWIRSGDK-YCRLPNGCYVYAGRSDDMLKV-SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREFA- 481 (529)
T ss_dssp TTEEEEEEE-EEECTTSCEEEEEEGGGCBC-----CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTCC-
T ss_pred cCCcccCce-EEECCCccEEEeCccCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCCC-
Confidence 379999998 999999999999999999997 899999999999999999999999999732 245788888764310
Q ss_pred HHHHHcCCCCChhhhcCCHHHHHHHHHHHHHHHHhCCCCCceeeeeEEEecCCCCcCCCccCccccccHHHHHH
Q psy2420 80 CKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQNGLLTPNFKMQRAQLKS 153 (174)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~v~~~~~~~~~~~~~~T~tgKv~R~~i~~ 153 (174)
..+.+. +++.+++ +..|+.|++|+.|.++++.+ +|++||++|+.+++
T Consensus 482 ----------------~~~~~~----~~l~~~l-~~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 482 ----------------PSEILA----EELKAFV-KDRLAPHKYPRDIVFVDDLP------KTATGKIQRFKLRE 528 (529)
T ss_dssp ----------------CCHHHH----HHHHHHH-HTTSCTTTSCSEEEEESCCC------BCTTSCBCHHHHHC
T ss_pred ----------------cchhHH----HHHHHHH-HhhcchhhCCeEEEEeccCC------CCCccchhHHhHhh
Confidence 011122 3444444 57899999999999998754 69999999999875
No 24
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=99.85 E-value=1.4e-22 Score=171.38 Aligned_cols=123 Identities=15% Similarity=0.166 Sum_probs=22.7
Q ss_pred CCcccccCCceeeccCCcEEEEccC--cCceecCCceeeccHHHHHHHhcCcccceEEEEeeCCC---CcEEEEEEcChH
Q psy2420 2 KKFLSKDKNEEIKSESGALKIIDRK--RHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLK---SYIVAIVVPDVD 76 (174)
Q Consensus 2 ~~~~~tgd~~~~~d~~G~l~i~GR~--~d~i~~s~G~~V~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~~a~v~~~~~ 76 (174)
.+||+|||. +++|++|+|+|+||. +|+||+ +|++|+|.+||++|.+||.|.+|+|+|.++. ..++|+|++.++
T Consensus 374 ~g~~~TGDl-~~~~~dG~l~~~GR~d~~d~ik~-~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~ 451 (509)
T 3ivr_A 374 NGWHHTGDM-GRFDADGYLFYAGRAPEKELIKT-GGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPG 451 (509)
T ss_dssp GGSEEEEEE-EEECTTSCEEEEEEC-------------------------------------------------------
T ss_pred cCCcccccE-EEECCCceEEEeCCCCcceeEEE-CCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCC
Confidence 379999998 999999999999999 999996 9999999999999999999999999998743 347778776543
Q ss_pred HHHHHHHHcCCCCChhhhcCCHHHHHHHHHHHHHHHHhCCCCCceeeeeEEEecCCCCcCCCccCccccccHHHHHHHHH
Q psy2420 77 VVKCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQNGLLTPNFKMQRAQLKSYFK 156 (174)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~v~~~~~~~~~~~~~~T~tgKv~R~~i~~~y~ 156 (174)
.... . +++.+++ +..|+.|++|+.|.++++.+ +|++||++|+.+++.+.
T Consensus 452 ~~~~--------------------~----~~l~~~l-~~~L~~~~~P~~i~~v~~lP------~t~~GKidr~~Lr~~~~ 500 (509)
T 3ivr_A 452 ESIA--------------------A----DALAEFV-ASLIARYKKPKHVVFVEALP------KDAKGAIDRAAVKTAHG 500 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCC--------------------H----HHHHHHH-HhhCcccCCCcEEEEecCCC------CCCCCCccHHHHHHHHh
Confidence 2100 1 2333333 46789999999999987654 69999999999998876
Q ss_pred H
Q psy2420 157 P 157 (174)
Q Consensus 157 ~ 157 (174)
+
T Consensus 501 ~ 501 (509)
T 3ivr_A 501 Q 501 (509)
T ss_dssp -
T ss_pred h
Confidence 5
No 25
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=99.84 E-value=1.6e-22 Score=182.98 Aligned_cols=133 Identities=16% Similarity=0.256 Sum_probs=26.9
Q ss_pred CCcccccCCceeeccCCcEEEEccCcCceecCCceeeccHHHHHHHhcCcccceEEEEeeCCC---CcEEEEEEcChHHH
Q psy2420 2 KKFLSKDKNEEIKSESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLK---SYIVAIVVPDVDVV 78 (174)
Q Consensus 2 ~~~~~tgd~~~~~d~~G~l~i~GR~~d~i~~s~G~~V~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~~a~v~~~~~~~ 78 (174)
.+||+|||. +++|++|+|+|+||+||+||+ +|++|+|.+||+.|.+||.|.+|+|+|.++. ..++|+|++.++..
T Consensus 457 ~g~~~TGDl-~~~~~dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~ 534 (979)
T 3tsy_A 457 DGWLHTGDI-GLIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSE 534 (979)
T ss_dssp TSCEEEEEE-EEECTTSCEEEEEESCC-----------------------------------------------------
T ss_pred CCcEEcCCE-EEEcCCceEEEecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCCC
Confidence 379999998 999999999999999999998 8999999999999999999999999997643 46788888654321
Q ss_pred HHHHHHcCCCCChhhhcCCHHHHHHHHHHHHHHHHhCCCCCceeeeeEEEecCCCCcCCCccCccccccHHHHHHHHHHH
Q psy2420 79 KCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQNGLLTPNFKMQRAQLKSYFKPQ 158 (174)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~v~~~~~~~~~~~~~~T~tgKv~R~~i~~~y~~~ 158 (174)
.. . +++.+++ +..|+.|++|+.|.++++.+ +|++||++|+.+++.|.+.
T Consensus 535 ~~--------------------~----~~l~~~l-~~~l~~~~~p~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~ 583 (979)
T 3tsy_A 535 LS--------------------E----DDVKQFV-SKQVVFYKRINKVFFTESIP------KAPSGKILRKDLRAKLANG 583 (979)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CC--------------------H----HHHHHHH-HHhcccccCCeEEEEeCCcC------cCCCCCeeHHHHHHHHHhh
Confidence 00 0 2333343 46789999999999987654 6999999999999999998
Q ss_pred HHHHhCCCC
Q psy2420 159 IEDLYNPPN 167 (174)
Q Consensus 159 i~~ly~~~~ 167 (174)
+...|...+
T Consensus 584 ~~~~~~~~e 592 (979)
T 3tsy_A 584 LGSGMASVE 592 (979)
T ss_dssp -----CCHH
T ss_pred cCCcccccc
Confidence 888887643
No 26
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=99.83 E-value=1e-21 Score=170.33 Aligned_cols=118 Identities=14% Similarity=0.135 Sum_probs=90.9
Q ss_pred CcccccCCceeeccCCcEEEEccCcCceecCCceeeccHHHHHHHhcCcccceEEEEeeCCCC--cEEEEEEcChHHHHH
Q psy2420 3 KFLSKDKNEEIKSESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLKS--YIVAIVVPDVDVVKC 80 (174)
Q Consensus 3 ~~~~tgd~~~~~d~~G~l~i~GR~~d~i~~s~G~~V~p~~iE~~l~~~~~V~~~~V~g~~~~~--~~~a~v~~~~~~~~~ 80 (174)
+||+|||. +++++||+|+|+||.||+||+ +|++|+|.+||++|.+||.|.+|+|++.++.. .+++.++...+..
T Consensus 396 ~~yrTGDl-~~~~~dG~l~~~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~~~~~-- 471 (620)
T 4dg8_A 396 RAYRTGDR-ARYDEQGRLRFIGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADAS-- 471 (620)
T ss_dssp EEEEEEEE-EEECTTSCEEEEECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEECTTCC--
T ss_pred eEEeCCCE-EEECCCCeEEEEccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecChHHH--
Confidence 69999998 999999999999999999998 89999999999999999999999999876432 3344444322110
Q ss_pred HHHHcCCCCChhhhcCCHHHHHHHHHHHHHHHHhCCCCCceeeeeEEEecCCCCcCCCccCccccccHHHHHHHHHHHH
Q psy2420 81 KALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQNGLLTPNFKMQRAQLKSYFKPQI 159 (174)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~v~~~~~~~~~~~~~~T~tgKv~R~~i~~~y~~~i 159 (174)
.+.+ ...||.|++|+.++++++.+ +|++||++|+.+++.|.+.+
T Consensus 472 ------------------------~~~l-----~~~Lp~y~~P~~~~~v~~lP------~t~~GKidR~~L~~~~~~~~ 515 (620)
T 4dg8_A 472 ------------------------PQAL-----LRQLPTWQRPHACVRVEALP------LTAHGKLDRAALLRRLEEPL 515 (620)
T ss_dssp ------------------------CHHH-----HHHSCGGGSCSEEEECSSCC------CC----CCHHHHHHHTCSCC
T ss_pred ------------------------HHHH-----HHhChhhcCCcEEEEECcCC------CCcccCHhHHHHhhcccccc
Confidence 0223 23489999999999987654 69999999999988775543
No 27
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=99.83 E-value=3.8e-22 Score=170.34 Aligned_cols=126 Identities=12% Similarity=0.189 Sum_probs=19.9
Q ss_pred CCcccccCCceeeccCCcEEEEccCcCceecCCceeeccHHHHHHHhcCcccceEEEEeeCCC---CcEEEEEEcChHHH
Q psy2420 2 KKFLSKDKNEEIKSESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLK---SYIVAIVVPDVDVV 78 (174)
Q Consensus 2 ~~~~~tgd~~~~~d~~G~l~i~GR~~d~i~~s~G~~V~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~~a~v~~~~~~~ 78 (174)
.+||+|||. +++|++|+|+|+||+||+||+ +|++|+|.+||+.|.+||.|.+|+|+|.++. ..++|+|++.+...
T Consensus 415 ~g~~~TGDl-~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~ 492 (550)
T 3rix_A 415 DGWLHSGDI-AYWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKT 492 (550)
T ss_dssp TSCEEEEEE-EEECTTCCEEEC----------------------------------------------------------
T ss_pred CCCeecCcE-EEEeCCceEEEEecchheeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCC
Confidence 479999998 999999999999999999998 8999999999999999999999999997653 35777887654321
Q ss_pred HHHHHHcCCCCChhhhcCCHHHHHHHHHHHHHHHHhCCCCCceeee-eEEEecCCCCcCCCccCccccccHHHHHHHHHH
Q psy2420 79 KCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVK-DIYLHPDPFSVQNGLLTPNFKMQRAQLKSYFKP 157 (174)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~-~v~~~~~~~~~~~~~~T~tgKv~R~~i~~~y~~ 157 (174)
.. . +++.+++ +..+++|+.|. .|.++++.+ +|++||++|+.+++.|.+
T Consensus 493 ~~----------------~--------~~l~~~~-~~~l~~~~~~~~~i~~v~~lP------~t~~GKi~r~~L~~~~~~ 541 (550)
T 3rix_A 493 MT----------------E--------KEIVDYV-ASQVTTAKKLRGGVVFVDEVP------KGLTGKLDARKIREILIK 541 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CC----------------H--------HHHHHHH-HHhcccccccCCceEEEeecC------CCCCcceeHHHHHHHHHh
Confidence 00 0 2233333 45678887765 577776654 699999999999998876
Q ss_pred HHH
Q psy2420 158 QIE 160 (174)
Q Consensus 158 ~i~ 160 (174)
...
T Consensus 542 ~~~ 544 (550)
T 3rix_A 542 AKK 544 (550)
T ss_dssp ---
T ss_pred hcc
Confidence 543
No 28
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=99.81 E-value=1.7e-21 Score=166.50 Aligned_cols=143 Identities=12% Similarity=0.110 Sum_probs=22.1
Q ss_pred CcccccCCceeeccCCcEEEEccCcCceecCCceeeccHHHHHHHhcC-cccceEEEEeeCCC---C-cEEEEEEcChHH
Q psy2420 3 KFLSKDKNEEIKSESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKS-LYVHQIFVYGESLK---S-YIVAIVVPDVDV 77 (174)
Q Consensus 3 ~~~~tgd~~~~~d~~G~l~i~GR~~d~i~~s~G~~V~p~~iE~~l~~~-~~V~~~~V~g~~~~---~-~~~a~v~~~~~~ 77 (174)
+||+|||. +++|+||+|+|+||.||+||+ +|++|+|.+||++|.++ |.+.+|+|++.++. . .+++++......
T Consensus 404 ~w~~TGDl-g~~d~dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~ 481 (562)
T 3ite_A 404 KMYRTGDI-VRMDADSSILFLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAA 481 (562)
T ss_dssp EEEEEEEE-EEECTTSCEEEEEEC--------------------------------------------------------
T ss_pred EEEecCCE-EEEcCCCeEEEEccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEeccccc
Confidence 39999998 999999999999999999997 99999999999999987 88999999886643 1 233333332221
Q ss_pred HHHHHHHcCCCCChhhhcCCHHHHHHHHHHHHHHHHhCCCCCceeeeeEEEecCCCCcCCCccC-ccccccHHHHHHHHH
Q psy2420 78 VKCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQNGLLT-PNFKMQRAQLKSYFK 156 (174)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~v~~~~~~~~~~~~~~T-~tgKv~R~~i~~~y~ 156 (174)
..... ..+ ..-...+.++|.+++ +.+|+.|++|+.|.++++.+ +| ++||++|+.+++.|+
T Consensus 482 ~~~~~---------~~~---~~~~~~~~~~l~~~~-~~~L~~y~~P~~i~~v~~lP------~t~~~GKi~r~~L~~~~~ 542 (562)
T 3ite_A 482 VRGEL---------RWI---NENYKEINNSLRQAC-EQTLPAYMVPDFIIPISFIP------LRDTSAKTDAKALEHMFH 542 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc---------ccc---ccchhhHHHHHHHHH-HhhCCcccCCcEEEEeccCC------CCCCCCcchHHHHHHHHh
Confidence 11000 000 000112234555555 57799999999999988765 46 899999999999988
Q ss_pred HH-HHHHhCCC
Q psy2420 157 PQ-IEDLYNPP 166 (174)
Q Consensus 157 ~~-i~~ly~~~ 166 (174)
+. ..+++++.
T Consensus 543 ~~~~~~~~~~~ 553 (562)
T 3ite_A 543 TLSLGELFGES 553 (562)
T ss_dssp -----------
T ss_pred ccCHHHHhccC
Confidence 75 35555543
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=99.81 E-value=3.6e-20 Score=158.11 Aligned_cols=134 Identities=16% Similarity=0.148 Sum_probs=94.8
Q ss_pred CcccccCCceeeccCCcEEEEccCcCceecCCceeeccHHHHHHHhcCcccceEEEEeeCC-CCcEEEEEEcChHHHHHH
Q psy2420 3 KFLSKDKNEEIKSESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESL-KSYIVAIVVPDVDVVKCK 81 (174)
Q Consensus 3 ~~~~tgd~~~~~d~~G~l~i~GR~~d~i~~s~G~~V~p~~iE~~l~~~~~V~~~~V~g~~~-~~~~~a~v~~~~~~~~~~ 81 (174)
+||+|||. +++ +||+|+|+||.||+||+ +|++|+|.+||++|.+||.|.+|+|++... .....+++.........
T Consensus 439 g~~~TGDl-~~~-~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~~~~~~~~~- 514 (576)
T 3gqw_A 439 GWLDTGDL-GYL-LDGYLYVTGRIKDLIII-RGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQEKIILQIQCRISDEER- 514 (576)
T ss_dssp SCEEEEEE-EEE-ETTEEEEEEETTTCEEE-TTEEECHHHHHHHHTTSSSCCTTSEEEEECTTSCEEEEEECCCCCHHH-
T ss_pred Ceeeccce-EEE-ECCEEEEEecCcceEEE-CCEEECHHHHHHHHHhCcccccccEEEEEcCCccEEEEEEEecCchhH-
Confidence 79999998 988 79999999999999998 899999999999999999999977766442 23444444432211000
Q ss_pred HHHcCCCCChhhhcCCHHHHHHHHHHHHHHHHhCCCCCceeeeeEEEecCCCCcCCCccCccccccHHHHHHHHHHHHHH
Q psy2420 82 ALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQNGLLTPNFKMQRAQLKSYFKPQIED 161 (174)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~v~~~~~~~~~~~~~~T~tgKv~R~~i~~~y~~~i~~ 161 (174)
..++.+.+.+.+. +.|+.|..+.+++. +..|+|++||++|+.+++.|.+.+.+
T Consensus 515 ---------------~~~l~~~l~~~l~--------~~~~~p~~i~~v~~----~~lP~t~~GKi~r~~l~~~~~~~~~~ 567 (576)
T 3gqw_A 515 ---------------RGQLIHALAARIQ--------SEFGVTAAIDLLPP----HSIPRTSSGKPARAEAKKRYQKAYAA 567 (576)
T ss_dssp ---------------HHHHHHHHHHHHH--------HHHSCCEEEEEECS----SCSCBCTTSSBCHHHHHHHHHHHHTC
T ss_pred ---------------HHHHHHHHHHHHH--------HHhCCceeEEEECC----CCcCcCCCccchHHHHHHHHHHHhhh
Confidence 0223333333331 45668888888762 22347999999999999999999988
Q ss_pred HhCCCC
Q psy2420 162 LYNPPN 167 (174)
Q Consensus 162 ly~~~~ 167 (174)
.|...+
T Consensus 568 ~~~~~~ 573 (576)
T 3gqw_A 568 SLNVQE 573 (576)
T ss_dssp C-----
T ss_pred ccchhh
Confidence 776544
No 30
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=99.79 E-value=6.2e-20 Score=170.24 Aligned_cols=118 Identities=16% Similarity=0.137 Sum_probs=96.9
Q ss_pred CcccccCCceeeccCCcEEEEccCcCceecCCceeeccHHHHHHHhcCcccceEEEEeeCCC---CcEEEEEEcChHHHH
Q psy2420 3 KFLSKDKNEEIKSESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLK---SYIVAIVVPDVDVVK 79 (174)
Q Consensus 3 ~~~~tgd~~~~~d~~G~l~i~GR~~d~i~~s~G~~V~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~~a~v~~~~~~~~ 79 (174)
+||+|||. ++|++||.|+|+||+||+||+ +|++|+|.+||.+|.++|.|.+|+|++.++. ..++|+|++....
T Consensus 838 ~~yrTGDl-~~~~~dG~l~~~GR~d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~~-- 913 (1304)
T 2vsq_A 838 TLYRTGDL-ARWLPDGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQL-- 913 (1304)
T ss_dssp EEEEEEEE-EEECTTSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSSS--
T ss_pred eeEecCCe-EEEcCCCeEEEEcCCCCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCCC--
Confidence 59999998 999999999999999999998 8999999999999999999999999997643 4688888865321
Q ss_pred HHHHHcCCCCChhhhcCCHHHHHHHHHHHHHHHHhCCCCCceeeeeEEEecCCCCcCCCccCccccccHHHHHHHH
Q psy2420 80 CKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQNGLLTPNFKMQRAQLKSYF 155 (174)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~v~~~~~~~~~~~~~~T~tgKv~R~~i~~~y 155 (174)
+ .+.+++.+ +..||.|++|..|+++++.+ +|++||++|+.+.+.+
T Consensus 914 -----------------~---~~~l~~~l-----~~~Lp~ymvP~~~~~l~~lP------~t~~GKidR~~L~~~~ 958 (1304)
T 2vsq_A 914 -----------------S---AEDVKAHL-----KKQLPAYMVPQTFTFLDELP------LTTNGKVNKRLLPKPD 958 (1304)
T ss_dssp -----------------C---HHHHHHHH-----HHHSCGGGSCSEEEEESCCC------CCSSCSSCCSCCCCCC
T ss_pred -----------------C---HHHHHHHH-----HHhChHhhhccEEEEecccC------CCCCcccCHhhcCCcc
Confidence 0 01222333 35689999999999998755 6999999998876543
No 31
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=99.74 E-value=1.3e-18 Score=148.99 Aligned_cols=125 Identities=14% Similarity=0.096 Sum_probs=89.8
Q ss_pred cccccCCceeeccCCcEEEEccCcCceecCCceeeccHHHHHHH-hcCcccc--eEEEEeeCCC--CcEEEEEEcChHHH
Q psy2420 4 FLSKDKNEEIKSESGALKIIDRKRHIFKLAQGEYIVPEKIEAVY-SKSLYVH--QIFVYGESLK--SYIVAIVVPDVDVV 78 (174)
Q Consensus 4 ~~~tgd~~~~~d~~G~l~i~GR~~d~i~~s~G~~V~p~~iE~~l-~~~~~V~--~~~V~g~~~~--~~~~a~v~~~~~~~ 78 (174)
||+|||. |++| +|+|+|+||+||+||+ +|++|+|.+||+.| ..+|.|. +|+|++.++. ..+++++++.+...
T Consensus 437 ~~~TGDl-g~~d-dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~~~~~~~~v~~~~~~~ 513 (590)
T 3kxw_A 437 YLRTGDL-GFLH-ENELYVTGRIKDLIII-YGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHEYKLTVMCEVKNRFM 513 (590)
T ss_dssp BEEEEEE-EEEE-TTEEEEEEESSCHHHH-HHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETTEEEEEEEEEESCTTC
T ss_pred EEecCcE-EEEE-CCEEEEEcCccceEEE-CCEecCHHHHHHHHHhcCccccCccEEEEEecCCCCceEEEEEEeccccc
Confidence 9999998 9999 9999999999999998 89999999999999 7899998 7888886533 45677777654310
Q ss_pred HHHHHHcCCCCChhhhcCCHHHHHHHHHHHHHHHHhCCCCCceeee-eEEEecCCCCcCCCccCccccccHHHHHHHHHH
Q psy2420 79 KCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVK-DIYLHPDPFSVQNGLLTPNFKMQRAQLKSYFKP 157 (174)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~-~v~~~~~~~~~~~~~~T~tgKv~R~~i~~~y~~ 157 (174)
.. ...+++.+.+++.+... |..|. .+.+++ .+..|+|++||++|+.+++.|.+
T Consensus 514 ~~--------------~~~~~l~~~l~~~l~~~--------~~~p~~~i~~v~----~~~lP~t~sGKi~R~~L~~~~~~ 567 (590)
T 3kxw_A 514 DD--------------VAQDNLFNEIFELVYEN--------HQLEVHTIVLIP----LKAMPHTTSGKIRRNFCRKHLLD 567 (590)
T ss_dssp CH--------------HHHHHHHHHHHHHHHHH--------HSCCCCEEEEEE----TTCSCCCSCHHHHHHHHHHHHHH
T ss_pred cc--------------hhHHHHHHHHHHHHHHH--------cCCceeEEEEEC----CCccCcCCCcHHHHHHHHHHHHc
Confidence 00 00133444454554332 33443 445543 11123799999999999999876
No 32
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.69 E-value=2.7e-18 Score=142.77 Aligned_cols=122 Identities=11% Similarity=0.028 Sum_probs=87.0
Q ss_pred CcccccCCceeeccC-CcE-----EEEccCcCceecCCceeeccHHHHHHHhcCcccceEEEEeeCC---CCcEEEEEEc
Q psy2420 3 KFLSKDKNEEIKSES-GAL-----KIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESL---KSYIVAIVVP 73 (174)
Q Consensus 3 ~~~~tgd~~~~~d~~-G~l-----~i~GR~~d~i~~s~G~~V~p~~iE~~l~~~~~V~~~~V~g~~~---~~~~~a~v~~ 73 (174)
+||+|||. ++++++ |++ +|+||.||+||+ +|++|+|.+||++|.++|.|.+|+|++.++ ...++|+|++
T Consensus 306 ~~y~TGDl-~~~~~~cG~~~~~l~~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~ 383 (443)
T 2y4o_A 306 IRYRTRDL-TALLPPTARAMRRLAKITGRSDDMLIV-RGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVEL 383 (443)
T ss_dssp SSEEEEEE-ECEECCSSSSSCEECCCCEESSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred heeecCCE-EEEcCCCCCCccccCccccccCCeEEE-CCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEE
Confidence 69999998 999999 997 899999999997 899999999999999999999999887432 3567888887
Q ss_pred Ch--HHHHHHHHHcCCCCChhhhcCCHHHHHHHHHHHHHHHHhCCCCCc-eeeeeEEEecCCCCcCCCccCccccccHHH
Q psy2420 74 DV--DVVKCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNF-EQVKDIYLHPDPFSVQNGLLTPNFKMQRAQ 150 (174)
Q Consensus 74 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~-~~p~~v~~~~~~~~~~~~~~T~tgKv~R~~ 150 (174)
.+ +... .....+++.+.+.+.+ +.| ..|..|.+++ ++..++|++||++|..
T Consensus 384 ~~~~~~~~-------------~~~~~~~l~~~l~~~l---------~~~~~~p~~v~~v~----~~~lP~t~~GKi~r~~ 437 (443)
T 2y4o_A 384 RSEAAASV-------------TDGERAALARELQHRI---------KTMVGVSSGVTVLA----AGGIPATATGKARRVI 437 (443)
T ss_dssp CHHHHTTC-------------CHHHHHHHHHHHHHHH---------HHHTCCCCEEEEEC----TTCSCCCTTSCCCSEE
T ss_pred CCcccccc-------------hhhHHHHHHHHHHHHH---------HHHhCCceEEEEeC----CCcccCccCCcceEEE
Confidence 75 2100 0000123333443433 333 3566777774 1122479999999965
Q ss_pred HH
Q psy2420 151 LK 152 (174)
Q Consensus 151 i~ 152 (174)
.+
T Consensus 438 ~~ 439 (443)
T 2y4o_A 438 DR 439 (443)
T ss_dssp EC
T ss_pred ec
Confidence 43
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.67 E-value=1.8e-17 Score=137.46 Aligned_cols=119 Identities=12% Similarity=0.059 Sum_probs=81.0
Q ss_pred CcccccCCceeeccCC------c---EEEEccCcCceecCCceeeccHHHHHHHhcCcccceEEEEeeCC---CCcEEEE
Q psy2420 3 KFLSKDKNEEIKSESG------A---LKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESL---KSYIVAI 70 (174)
Q Consensus 3 ~~~~tgd~~~~~d~~G------~---l~i~GR~~d~i~~s~G~~V~p~~iE~~l~~~~~V~~~~V~g~~~---~~~~~a~ 70 (174)
+||+|||. ++++++| + ++|+||.||+||+ +|++|+|.+||++|.++|.|.+|+|++.++ ...++|+
T Consensus 299 ~~y~TGDl-~~~~~~gc~cG~~~~~il~i~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~ 376 (436)
T 3qov_A 299 IRYRTRDL-TRILPGKCPCGRTHLRIDRIKGRSDDMFII-KGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVE 376 (436)
T ss_dssp CSEEEEEE-ECEECSCCTTCCCSCEECCCCCBSSSCEEE-TTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEE
T ss_pred EEEEcCCE-EEEcCCCCCCCCCccccCcccCccCCEEEE-CCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEE
Confidence 69999998 9999998 6 7999999999998 899999999999999999999999998653 3578888
Q ss_pred EEcChHHHHHHHHHcCCCCChhhhcCCHHHHHHHHHHHHHHHHhCCCCCceeeeeEEEecCCCCcCCCccCccccccHH
Q psy2420 71 VVPDVDVVKCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQNGLLTPNFKMQRA 149 (174)
Q Consensus 71 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~v~~~~~~~~~~~~~~T~tgKv~R~ 149 (174)
|+++ +... .+....+++.+.+.+.+.+.. ..|..+.+++. +..++|+ ||++|.
T Consensus 377 v~~~-~~~~------------~~~~~~~~l~~~l~~~l~~~~--------~~p~~i~~v~~----~~lP~t~-GKi~R~ 429 (436)
T 3qov_A 377 VELS-DLST------------DNYIELEKIRRDIIRQLKDEI--------LVTPKVKLVKK----GSLPQSE-GKAVRV 429 (436)
T ss_dssp EEEC-TTCC------------CCHHHHHHHHHHHHHHHHHHH--------SSCCEEEEECT----TCCC--------CE
T ss_pred EEEc-Cccc------------cchhhHHHHHHHHHHHHHHhc--------CCceEEEEeCC----CcccCcC-CcceEE
Confidence 8886 3200 000001344555555554432 45667788761 1224699 999884
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.65 E-value=3.2e-17 Score=136.06 Aligned_cols=118 Identities=16% Similarity=0.089 Sum_probs=84.8
Q ss_pred CcccccCCceeecc-CCcE-----EEEccCcCceecCCceeeccHHHHHHHhcCcccceEEEEeeCC---CCcEEEEEEc
Q psy2420 3 KFLSKDKNEEIKSE-SGAL-----KIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESL---KSYIVAIVVP 73 (174)
Q Consensus 3 ~~~~tgd~~~~~d~-~G~l-----~i~GR~~d~i~~s~G~~V~p~~iE~~l~~~~~V~~~~V~g~~~---~~~~~a~v~~ 73 (174)
+||+|||. +++++ +|++ +|+||.||+||+ +|++|+|.+||++|.++|.|.+|+|++.++ ...++|+|++
T Consensus 304 ~~y~TGDl-~~~~~~~G~~~~~i~~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~ 381 (437)
T 2y27_A 304 IRYRTRDL-TRLLPGTARTMRRMEKITGRSDDMMIV-RGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEP 381 (437)
T ss_dssp CSEEEEEE-ECEECCSSSSSCEECCCCEEGGGCEEE-TTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECB
T ss_pred heeecCCE-EEEeCCCCCCccccCccccccCCeEEE-CCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEE
Confidence 69999998 99999 6996 999999999998 899999999999999999999988887432 3568888887
Q ss_pred ChHHHHHHHHHcCCCCChhhhcCCHHHHHHHHHHHHHHHHhCCCCCc-eeeeeEEEecCCCCcCCCccCccccccHH
Q psy2420 74 DVDVVKCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNF-EQVKDIYLHPDPFSVQNGLLTPNFKMQRA 149 (174)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~-~~p~~v~~~~~~~~~~~~~~T~tgKv~R~ 149 (174)
.++... +....+++.+.+.+.+ +.| ..|..|.+++ ++..++|+ ||++|.
T Consensus 382 ~~~~~~-------------~~~~~~~l~~~l~~~l---------~~~~~~p~~v~~v~----~~~lP~t~-GKi~r~ 431 (437)
T 2y27_A 382 CPETAP-------------DTAAIQVAKQALAYDI---------KSLIGVTAVINVLP----VNGIERSV-GKARRV 431 (437)
T ss_dssp CTTTTT-------------CHHHHHHHHHHHHHHH---------HHHHCCCEEEEECC----TTCSCCCS-SSCCCE
T ss_pred CCCccc-------------hhhhHHHHHHHHHHHH---------HHhcCCceEEEEeC----CCCccCCC-CcceEE
Confidence 654210 0000123333343333 444 3667777774 11224699 999985
No 35
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.43 E-value=3.3e-13 Score=91.97 Aligned_cols=98 Identities=12% Similarity=0.031 Sum_probs=60.9
Q ss_pred ccCcCceecCCceeeccHHHHHHHhcCcccceEEEEeeCCC---CcEEEEEEcChHHHHHHHHHcCCCCChhhhcCCHHH
Q psy2420 24 DRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLK---SYIVAIVVPDVDVVKCKALENGIPGTLSVLCADPKV 100 (174)
Q Consensus 24 GR~~d~i~~s~G~~V~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (174)
.|.||+||+ +|.||+|.+||++|.+||.|.+++|+|.++. ..+.++|++.+.... +. ....++
T Consensus 1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~----------~~---~~~~~l 66 (109)
T 3lax_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTD----------DY---GRLQAL 66 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCC----------CH---HHHHHH
T ss_pred CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeecccc----------cc---chhhhh
Confidence 389999998 8999999999999999999999998886533 346677766543100 00 001334
Q ss_pred HHHHHHHHHHHHHhCCCCCceeeeeEEEecCCCCcCCCccCccccccH
Q psy2420 101 KQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQNGLLTPNFKMQR 148 (174)
Q Consensus 101 ~~~i~~~l~~~~~~~~l~~~~~p~~v~~~~~~~~~~~~~~T~tgKv~R 148 (174)
.+.+.+.+.+.. ++ +..+.+++ ++..|+| |||++|
T Consensus 67 ~~~i~~~l~~~~---gv-----~~~v~~v~----~~~lPrt-sGKi~R 101 (109)
T 3lax_A 67 TREITRQLKDEI---LV-----TPRVKLVP----KGALPKS-EGKAVR 101 (109)
T ss_dssp HHHHHHHHHHHH---SS-----CCEEEEEC----TTCSCCC----CCC
T ss_pred HHHHHHHHHHHh---CC-----ccceEEEc----CCeecCC-CCCcch
Confidence 445555554432 23 23466664 2233467 799988
No 36
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.35 E-value=2.9e-12 Score=87.40 Aligned_cols=99 Identities=12% Similarity=0.051 Sum_probs=61.6
Q ss_pred ccCcCceecCCceeeccHHHHHHHhcCcccceEEEEeeCC---CCcEEEEEEcChHHHHHHHHHcCCCCChhhhcCCHHH
Q psy2420 24 DRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESL---KSYIVAIVVPDVDVVKCKALENGIPGTLSVLCADPKV 100 (174)
Q Consensus 24 GR~~d~i~~s~G~~V~p~~iE~~l~~~~~V~~~~V~g~~~---~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (174)
||.||+|++ +|.||+|.+||+++.++|.|.++++++.++ ...++++|.+ +.... .+....+++
T Consensus 1 GR~~D~Iiv-~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~------------~~~~~~~~l 66 (109)
T 3gxs_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFT------------DDYGRLQAL 66 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCC------------CCHHHHHHH
T ss_pred CCccCEEEE-CCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccc------------cchhHHHHH
Confidence 899999998 899999999999999999999877766432 2457777776 32100 000001345
Q ss_pred HHHHHHHHHHHHHhCCCCCceeeeeEEEecCCCCcCCCccCccccccHH
Q psy2420 101 KQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQNGLLTPNFKMQRA 149 (174)
Q Consensus 101 ~~~i~~~l~~~~~~~~l~~~~~p~~v~~~~~~~~~~~~~~T~tgKv~R~ 149 (174)
.+.+.+.+.+.. +++ + .+.+++. ...|.| +||++|.
T Consensus 67 ~~~i~~~l~~~~---~~~----~-~v~~v~~----~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 67 TREITRQLKDEI---LVT----P-RVKLVPK----GALPKS-EGKAVRV 102 (109)
T ss_dssp HHHHHHHHHHHH---SSC----C-EEEEECT----TCSCCC----CCCE
T ss_pred HHHHHHHHHHhh---CCc----e-EEEEECC----CCccCC-CCceEEE
Confidence 555666665432 332 2 5777752 223469 9999984
No 37
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=95.03 E-value=0.0093 Score=51.51 Aligned_cols=42 Identities=5% Similarity=0.105 Sum_probs=36.6
Q ss_pred ccccCCceeec----cCCcEEEEccCcCceecCCceeeccHHHHHHHh
Q psy2420 5 LSKDKNEEIKS----ESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYS 48 (174)
Q Consensus 5 ~~tgd~~~~~d----~~G~l~i~GR~~d~i~~s~G~~V~p~~iE~~l~ 48 (174)
|++||. .+++ ....+.|+||.+++|.+ .|++|++.+||+++.
T Consensus 412 Yr~GD~-v~v~~f~~~~p~i~~~gR~~~~l~~-~Geki~~~~v~~av~ 457 (609)
T 4b2g_A 412 YRVGDI-LRVTGFHNSAPQFHFVRRKNVLLSI-DSDKTDEAELQKAVD 457 (609)
T ss_dssp EEEEEE-EEEEEEETTEEEEEEEEETTCCBCS-SSCCBCHHHHHHHHH
T ss_pred eecCCE-EEEeecCCCCcEEEEEEecCCeEEc-cccCCCHHHHHHHHH
Confidence 458887 6665 45689999999999998 899999999999997
No 38
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=94.80 E-value=0.011 Score=50.89 Aligned_cols=43 Identities=9% Similarity=0.180 Sum_probs=36.9
Q ss_pred ccccCCceeecc----CCcEEEEccCcCceecCCceeeccHHHHHHHhc
Q psy2420 5 LSKDKNEEIKSE----SGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSK 49 (174)
Q Consensus 5 ~~tgd~~~~~d~----~G~l~i~GR~~d~i~~s~G~~V~p~~iE~~l~~ 49 (174)
+++||. .+++. ...+.|+||.+++|.+ .|++|.+.+||+++.+
T Consensus 400 Yr~GD~-v~v~~f~~~~p~i~f~gR~~~~l~~-~Gekl~~~~v~~al~~ 446 (581)
T 4eql_A 400 MRVGDI-VLVTGFYNNAPQFKFVRRENVVLSI-DSDKTNEEDLFKAVSQ 446 (581)
T ss_dssp EECCEE-EEEEEEETTEEEEEEEEETTEEECS-SSCCEEHHHHHHHHHH
T ss_pred EEcCCE-EEEcccCCCCcEEEEEEecCCEEEe-eeeECCHHHHHHHHHH
Confidence 458887 66664 5679999999999998 8999999999999974
No 39
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=92.58 E-value=0.047 Score=46.90 Aligned_cols=43 Identities=12% Similarity=0.057 Sum_probs=35.5
Q ss_pred ccccCCceeecc----CCcEEEEccCcCceecCCceeeccHHHHHHHhc
Q psy2420 5 LSKDKNEEIKSE----SGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSK 49 (174)
Q Consensus 5 ~~tgd~~~~~d~----~G~l~i~GR~~d~i~~s~G~~V~p~~iE~~l~~ 49 (174)
+++||. .+++. ...+.|+||.++++.+ .|+++.+.+||+++..
T Consensus 407 Yr~GD~-v~v~g~~~~~p~~~~~gR~~~~l~~-~Ge~~~~~~v~~al~~ 453 (581)
T 4epl_A 407 YRLGDV-VKVIGFYNNTPQLKFICRRNLILSI-NIDKNTERDLQLSVES 453 (581)
T ss_dssp EEEEEE-EEEEEEETTEEEEEEEEETTCCBCS-SSCCBCHHHHHHHHHH
T ss_pred EEcCCE-EEEecccCCCcEEEEEeecCCeEEe-eeeECCHHHHHHHHHH
Confidence 457887 66652 2469999999999998 8999999999999973
No 40
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=60.77 E-value=23 Score=21.37 Aligned_cols=39 Identities=10% Similarity=0.061 Sum_probs=28.8
Q ss_pred cHHHHHHHhcCcccceEEEEeeCCCCcEEEEEEcChHHHH
Q psy2420 40 PEKIEAVYSKSLYVHQIFVYGESLKSYIVAIVVPDVDVVK 79 (174)
Q Consensus 40 p~~iE~~l~~~~~V~~~~V~g~~~~~~~~a~v~~~~~~~~ 79 (174)
...+++.+.+.|.|.+|..+.-+ ..++.-+.+++.+.+.
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~-~D~ll~v~~~d~~~l~ 53 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGE-YDLIVKVETDTLKDLD 53 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSS-CSEEEEEEESSHHHHH
T ss_pred HHHHHHHHhCCCCeeEEEEEccc-CCEEEEEEECCHHHHH
Confidence 47899999999999999876443 5666666676665443
No 41
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=58.11 E-value=22 Score=21.17 Aligned_cols=39 Identities=13% Similarity=0.117 Sum_probs=27.8
Q ss_pred cHHHHHHHhcCcccceEEEEeeCCCCcEEEEEEcChHHHH
Q psy2420 40 PEKIEAVYSKSLYVHQIFVYGESLKSYIVAIVVPDVDVVK 79 (174)
Q Consensus 40 p~~iE~~l~~~~~V~~~~V~g~~~~~~~~a~v~~~~~~~~ 79 (174)
..++++.+.+.|.|.+|..+.-+ ..+++-+.+++.+.+.
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~-~d~l~~v~~~d~~~l~ 53 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVYGV-YDIVVKVEADSMDKLK 53 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECSSS-CSEEEEEECSSHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEEecc-CCEEEEEEECCHHHHH
Confidence 37889999999999999876443 4566666666655443
No 42
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=55.69 E-value=29 Score=21.32 Aligned_cols=39 Identities=8% Similarity=0.172 Sum_probs=29.1
Q ss_pred cHHHHHHHhcCcccceEEEEeeCCCCcEEEEEEcChHHHH
Q psy2420 40 PEKIEAVYSKSLYVHQIFVYGESLKSYIVAIVVPDVDVVK 79 (174)
Q Consensus 40 p~~iE~~l~~~~~V~~~~V~g~~~~~~~~a~v~~~~~~~~ 79 (174)
..++++.+.+.|.|.+|..+.-+ ..++.-+.+.+.+.+.
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~-~D~ll~v~~~d~~~l~ 53 (92)
T 2djw_A 15 VQALGEAIAELPQVAEVYSVTGP-YDLVALVRLKDVEELD 53 (92)
T ss_dssp HHHHHHHHTTSTTEEEEEEESSS-SSEEEEEEESSGGGHH
T ss_pred HHHHHHHHhcCCCeEEEEEeecC-CCEEEEEEECCHHHHH
Confidence 57888999999999999876443 5666666777765544
No 43
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=49.03 E-value=49 Score=21.79 Aligned_cols=41 Identities=5% Similarity=0.148 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCceeeeeEEEecCCCCcCCCccCccccccHHHHHHHHHHHH
Q psy2420 98 PKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQNGLLTPNFKMQRAQLKSYFKPQI 159 (174)
Q Consensus 98 ~~~~~~i~~~l~~~~~~~~l~~~~~p~~v~~~~~~~~~~~~~~T~tgKv~R~~i~~~y~~~i 159 (174)
+++...+.+.++.++++.++|+| ..||+-|..+.++|.+.|
T Consensus 25 ~~~~~~~~~~~~~~~k~v~ipGF---------------------RkGKvP~~vi~k~yG~~v 65 (121)
T 1p9y_A 25 DSIETAVKSELVNVAKKVRIDGL---------------------RKGKVPMNIVAQRYGASV 65 (121)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTS---------------------CTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCccCCc---------------------CCCCCCHHHHHHHHHHHH
Confidence 34556666788888767777776 268888888888886543
No 44
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=43.28 E-value=40 Score=21.76 Aligned_cols=39 Identities=10% Similarity=0.102 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCceeeeeEEEecCCCCcCCCccCccccccHHHHHHHHHH
Q psy2420 98 PKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQNGLLTPNFKMQRAQLKSYFKP 157 (174)
Q Consensus 98 ~~~~~~i~~~l~~~~~~~~l~~~~~p~~v~~~~~~~~~~~~~~T~tgKv~R~~i~~~y~~ 157 (174)
+++...+.+.+++++++.++|+| ..||+-|..+.++|.+
T Consensus 22 ~~~~~~~~~~~~~~~k~~~ipGF---------------------RkGKvP~~vi~k~yG~ 60 (109)
T 2nsc_A 22 EEIAQAEDKAVRYLNQRVEIPGF---------------------RKGRIPKNVLKMKLGE 60 (109)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTS---------------------CTTCCCHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHhccCCCCCc---------------------CCCCCCHHHHHHHHhH
Confidence 44556666788888777777776 2688888888888753
No 45
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=37.31 E-value=76 Score=21.68 Aligned_cols=38 Identities=21% Similarity=0.373 Sum_probs=27.3
Q ss_pred cHHHHHHHhcCcccceEEEEeeCCCCcEEEEEEcChHHH
Q psy2420 40 PEKIEAVYSKSLYVHQIFVYGESLKSYIVAIVVPDVDVV 78 (174)
Q Consensus 40 p~~iE~~l~~~~~V~~~~V~g~~~~~~~~a~v~~~~~~~ 78 (174)
...+.+.+.++|.|.+|..+.-+ ..+++-+.+++.+.+
T Consensus 79 ~~~~~~~l~~~peV~~~~~vtG~-~D~~l~v~~~d~~~l 116 (162)
T 3i4p_A 79 LKRFSEVVSEFPEVVEFYRMSGD-VDYLLRVVVPDIAAY 116 (162)
T ss_dssp HHHHHHHHHHCTTEEEEEECCSS-CSEEEEEEESSHHHH
T ss_pred HHHHHHHHhcCCCEEEeeecCCC-CCEEEEEEECCHHHH
Confidence 46788889999999999976433 566666666665544
No 46
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=36.07 E-value=96 Score=20.70 Aligned_cols=39 Identities=10% Similarity=0.068 Sum_probs=28.1
Q ss_pred cHHHHHHHhcCcccceEEEEeeCCCCcEEEEEEcChHHHH
Q psy2420 40 PEKIEAVYSKSLYVHQIFVYGESLKSYIVAIVVPDVDVVK 79 (174)
Q Consensus 40 p~~iE~~l~~~~~V~~~~V~g~~~~~~~~a~v~~~~~~~~ 79 (174)
..++.+.+.++|.|.+|..+.-+ ..+++-+.+.+.+.+.
T Consensus 82 ~~~~~~~l~~~peV~~~~~vtG~-~d~~~~v~~~d~~~l~ 120 (152)
T 2cg4_A 82 YPSALAKLESLDEVTEAYYTTGH-YSIFIKVMCRSIDALQ 120 (152)
T ss_dssp HHHHHHHHHTCTTEEEEEEESSS-CSEEEEEEESCHHHHH
T ss_pred HHHHHHHHhCCcCeEEEEEEecc-cCEEEEEEECCHHHHH
Confidence 46788899999999999977443 5566666666665443
No 47
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=30.57 E-value=1.2e+02 Score=20.14 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=26.1
Q ss_pred HHHHHHHhcCcccceEEEEeeCCCCcEEEEEE-cChHHH
Q psy2420 41 EKIEAVYSKSLYVHQIFVYGESLKSYIVAIVV-PDVDVV 78 (174)
Q Consensus 41 ~~iE~~l~~~~~V~~~~V~g~~~~~~~~a~v~-~~~~~~ 78 (174)
..+++.+.++|.|.+|..+.-+ ..+++-+.+ ++.+.+
T Consensus 83 ~~~~~~l~~~peV~~~~~vtG~-~d~~~~v~~~~d~~~l 120 (151)
T 2dbb_A 83 DKVISEISDIEYVKSVEKGVGR-YNIIVRLLLPKDIKDA 120 (151)
T ss_dssp HHHHHHHTTCTTEEEEEEEESS-CSEEEEEEEESSHHHH
T ss_pred HHHHHHHHcCCCeEEEeEecCC-CCEEEEEEEcCCHHHH
Confidence 5778888899999999976433 556666666 565443
No 48
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=30.55 E-value=1.1e+02 Score=20.38 Aligned_cols=38 Identities=8% Similarity=0.116 Sum_probs=26.8
Q ss_pred cHHHHHHHhcCcccceEEEEeeCCCCcEEEEEEcChHHH
Q psy2420 40 PEKIEAVYSKSLYVHQIFVYGESLKSYIVAIVVPDVDVV 78 (174)
Q Consensus 40 p~~iE~~l~~~~~V~~~~V~g~~~~~~~~a~v~~~~~~~ 78 (174)
...+.+.+.+.|.|.+|..+.-+ ..+++-+.+++.+.+
T Consensus 80 ~~~~~~~l~~~p~V~~~~~~tG~-~d~~~~v~~~d~~~l 117 (151)
T 2cyy_A 80 YSEVASNLAKYPEIVEVYETTGD-YDMVVKIRTKNSEEL 117 (151)
T ss_dssp HHHHHHHHHTCTTEEEEEECSSS-SSEEEEEEESSHHHH
T ss_pred HHHHHHHHhcCCCeeEeeEecCC-CCEEEEEEECCHHHH
Confidence 36788888999999999876433 456565666665443
No 49
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=28.45 E-value=1.4e+02 Score=20.16 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=26.6
Q ss_pred cHHHHHHHhcCcccceEEEEeeCCCCcEEEEEEcChHHH
Q psy2420 40 PEKIEAVYSKSLYVHQIFVYGESLKSYIVAIVVPDVDVV 78 (174)
Q Consensus 40 p~~iE~~l~~~~~V~~~~V~g~~~~~~~~a~v~~~~~~~ 78 (174)
...+++.+.+.|.|.+|..+.-+ ..+++-+.+.+.+.+
T Consensus 85 ~~~~~~~l~~~peV~~~~~vtG~-~d~~~~v~~~d~~~l 122 (162)
T 2p5v_A 85 REDFAASVRKWPEVLSCFALTGE-TDYLLQAFFTDMNAF 122 (162)
T ss_dssp HHHHHHHHTTCTTEEEEEEESSS-CSEEEEEEESSHHHH
T ss_pred HHHHHHHHhcChhhhEeeeecCC-CCEEEEEEECCHHHH
Confidence 46778888899999999865433 556666666665544
No 50
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=27.61 E-value=1.3e+02 Score=20.88 Aligned_cols=38 Identities=8% Similarity=0.116 Sum_probs=26.8
Q ss_pred cHHHHHHHhcCcccceEEEEeeCCCCcEEEEEEcChHHH
Q psy2420 40 PEKIEAVYSKSLYVHQIFVYGESLKSYIVAIVVPDVDVV 78 (174)
Q Consensus 40 p~~iE~~l~~~~~V~~~~V~g~~~~~~~~a~v~~~~~~~ 78 (174)
..++.+.+.+.|.|.+|..+.-+ ..+++-+.+.+.+.+
T Consensus 100 ~~~v~~~l~~~peV~~~~~vtG~-~d~l~~v~~~d~~~l 137 (171)
T 2e1c_A 100 YSEVASNLAKYPEIVEVYETTGD-YDMVVKIRTKNSEEL 137 (171)
T ss_dssp HHHHHHHHHTSTTEEEEEECSSS-SSEEEEEEESSHHHH
T ss_pred HHHHHHHHhcCcCeEEEEEeeCC-CCEEEEEEECCHHHH
Confidence 36788888999999999876433 456555666665443
No 51
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=25.12 E-value=1.5e+02 Score=19.52 Aligned_cols=38 Identities=11% Similarity=0.208 Sum_probs=25.8
Q ss_pred cHHHHHHHhcCcccceEEEEeeCCCCcEEEEEEcChHHH
Q psy2420 40 PEKIEAVYSKSLYVHQIFVYGESLKSYIVAIVVPDVDVV 78 (174)
Q Consensus 40 p~~iE~~l~~~~~V~~~~V~g~~~~~~~~a~v~~~~~~~ 78 (174)
...+.+.+.++|.|.+|..+.-+ ..+.+-+.+.+.+.+
T Consensus 78 ~~~~~~~l~~~p~V~~~~~~tG~-~d~~~~v~~~~~~~l 115 (144)
T 2cfx_A 78 YERFKSYIQTLPNIEFCYRIAGA-ACYMLKINAESLEAV 115 (144)
T ss_dssp HHHHHHHHHTCTTEEEEEEEESS-SSEEEEEEESSHHHH
T ss_pred HHHHHHHHhcChhhheeeeeeCC-CCEEEEEEECCHHHH
Confidence 35777888899999999965433 456555666665443
No 52
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=23.62 E-value=1.6e+02 Score=20.90 Aligned_cols=59 Identities=12% Similarity=0.170 Sum_probs=34.4
Q ss_pred ceeeccCCcEEEEccCcCceecCCce--eeccHHHHHHHhcCcccceEEEEeeCCCCcEEEEEEcCh
Q psy2420 11 EEIKSESGALKIIDRKRHIFKLAQGE--YIVPEKIEAVYSKSLYVHQIFVYGESLKSYIVAIVVPDV 75 (174)
Q Consensus 11 ~~~~d~~G~l~i~GR~~d~i~~s~G~--~V~p~~iE~~l~~~~~V~~~~V~g~~~~~~~~a~v~~~~ 75 (174)
..+.++||...|.|. ++.+.++. ++.-+.+...+... -.+.+++|.+.. .+..+++-++
T Consensus 36 ~~y~~~dg~~~i~G~---l~d~~~~~~~~lt~~~~~~~~~~l--~~~~~~~g~~~~-k~~vv~F~d~ 96 (216)
T 1eej_A 36 VLYITDDGKHIIQGP---MYDVSGTAPVNVTNKMLLKQLNAL--EKEMIVYKAPQE-KHVITVFTDI 96 (216)
T ss_dssp EEEEETTSCEEEESC---EEECSSSSCEEHHHHHHHHHHHTT--GGGSEEECCTTC-CEEEEEEECT
T ss_pred EEEEcCCCCEEEEee---eEecCCCCccccchHHHHHHHHhh--hhcCeeecCCCC-CEEEEEEECC
Confidence 378889999999885 55554454 45444454444432 245678887633 3344444444
No 53
>1smp_I Erwinia chrysanthemi inhibitor; complex (metalloprotease/inhibitor); 2.30A {Erwinia chrysanthemi} SCOP: b.61.2.1
Probab=22.99 E-value=43 Score=21.72 Aligned_cols=29 Identities=10% Similarity=0.288 Sum_probs=23.3
Q ss_pred CCcccccCCceeeccCCc-EEEEccCcCce
Q psy2420 2 KKFLSKDKNEEIKSESGA-LKIIDRKRHIF 30 (174)
Q Consensus 2 ~~~~~tgd~~~~~d~~G~-l~i~GR~~d~i 30 (174)
-+|..|+|...-.+.||. +.+..|.++..
T Consensus 56 ~~W~ptPDGi~L~~~dGs~l~ff~r~~~~y 85 (101)
T 1smp_I 56 VGWRPTPDGLTLTQADGSAVAFFSRNRDRY 85 (101)
T ss_dssp CEEEECSSEEEEECTTSCEEEEEEEETTEE
T ss_pred cccccCCCEEEEEcCCCCEEEEecccCCcc
Confidence 379999998777888886 88888988833
No 54
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Probab=20.17 E-value=1.2e+02 Score=21.53 Aligned_cols=60 Identities=17% Similarity=0.211 Sum_probs=33.5
Q ss_pred ceeeccCCcEEEEccCcCceecCCce--eeccHHHHHHHhcCcccceEEEEeeCCCCcEEEEEEcChH
Q psy2420 11 EEIKSESGALKIIDRKRHIFKLAQGE--YIVPEKIEAVYSKSLYVHQIFVYGESLKSYIVAIVVPDVD 76 (174)
Q Consensus 11 ~~~~d~~G~l~i~GR~~d~i~~s~G~--~V~p~~iE~~l~~~~~V~~~~V~g~~~~~~~~a~v~~~~~ 76 (174)
..+.++||...|.|.. +.+.++. ++.-+.+...+.. .=....++|.++. .+..+++-++.
T Consensus 36 ~~y~~~dg~~~i~G~l---~d~~~~~~~~lt~~~~~~~~~~--l~~~~~~~g~~~~-k~~vv~F~d~~ 97 (211)
T 1t3b_A 36 ILYVSEDGKYLFEGKL---YELTNNGPVDVAGKILVDKLNS--YKDEMIVYPAKNE-KHVVTVFMDIT 97 (211)
T ss_dssp ECEEESSSSCEECSCC---CCCTTTSCCCTHHHHHHHHHHT--TGGGSEEECCTTC-SEEEEEEECTT
T ss_pred EEEEcCCCCEEEEeeE---EEcCCCcccccchHHHHhhhhh--ccccceEecCCCC-CEEEEEEECCC
Confidence 4788899998888864 5544555 4544444444432 2224566776633 33444444443
Done!