RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2420
(174 letters)
>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA
synthetase (LC-FACS). The members of this family are
eukaryotic fatty acid CoA synthetases that activate
fatty acids with chain lengths of 12 to 20. LC-FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
This is a required step before free fatty acids can
participate in most catabolic and anabolic reactions.
Organisms tend to have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells.
Length = 539
Score = 230 bits (590), Expect = 4e-74
Identities = 76/149 (51%), Positives = 109/149 (73%), Gaps = 1/149 (0%)
Query: 16 ESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLKSYIVAIVVPDV 75
G LKIIDRK+++FKL+QGEY+ EK+E +Y S V QI VYG+SLKS++VAIVVPD
Sbjct: 391 PDGTLKIIDRKKNLFKLSQGEYVALEKLENIYKSSPLVDQICVYGDSLKSFLVAIVVPDE 450
Query: 76 DVVKCKALENGIP-GTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFS 134
DV++ A ENG G LC + K+K+ I++D+ +++GL+ FE VK I+L P+PF+
Sbjct: 451 DVLEKWAAENGGGGGDFEELCNNKKLKKAILKDLNEIGKENGLKGFEIVKAIHLTPEPFT 510
Query: 135 VQNGLLTPNFKMQRAQLKSYFKPQIEDLY 163
+NGLLTP FK++R QLK +K +I+++Y
Sbjct: 511 PENGLLTPTFKLKRPQLKKRYKKEIDEMY 539
>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase.
Length = 651
Score = 203 bits (518), Expect = 1e-62
Identities = 81/147 (55%), Positives = 103/147 (70%), Gaps = 1/147 (0%)
Query: 18 GALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLKSYIVAIVVPDVDV 77
G LKIIDRK++IFKLAQGEYI PEKIE VY+K +V Q FVYG+SL S +VA+VV D +V
Sbjct: 501 GRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLNSSLVAVVVVDPEV 560
Query: 78 VKCKALENGIP-GTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQ 136
+K A GI L LC DP+V+ ++ DM A R+ LR FE K + L P+PF+V+
Sbjct: 561 LKAWAASEGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVE 620
Query: 137 NGLLTPNFKMQRAQLKSYFKPQIEDLY 163
NGLLTP FK++R Q K+YF I D+Y
Sbjct: 621 NGLLTPTFKVKRPQAKAYFAKAISDMY 647
>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 149 bits (379), Expect = 1e-42
Identities = 62/148 (41%), Positives = 98/148 (66%)
Query: 16 ESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLKSYIVAIVVPDV 75
+GA+KIIDRK++IFKL+QGEY+ E +E YS+ + I+VYG S +S++VA+VVPD
Sbjct: 505 PNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSFESFLVAVVVPDR 564
Query: 76 DVVKCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSV 135
++ A N G LC + K ++ I++++ + ++ LR FE +K I+L P+PF +
Sbjct: 565 QALEDWAANNNKTGDFKSLCKNLKARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDI 624
Query: 136 QNGLLTPNFKMQRAQLKSYFKPQIEDLY 163
+ L+TP FK++R QL Y+K I+ LY
Sbjct: 625 ERDLITPTFKLKRPQLLKYYKDCIDQLY 652
>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase.
Length = 666
Score = 135 bits (342), Expect = 1e-37
Identities = 61/151 (40%), Positives = 100/151 (66%)
Query: 17 SGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLKSYIVAIVVPDVD 76
+G++KIIDRK++IFKL+QGEY+ E IE +Y + V ++VYG S +S++VAI P+
Sbjct: 509 NGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFESFLVAIANPNQQ 568
Query: 77 VVKCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQ 136
+++ A ENG+ G + LC + K K+ I+ ++ A++ ++ FE +K I+L P PF ++
Sbjct: 569 ILERWAAENGVSGDYNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDME 628
Query: 137 NGLLTPNFKMQRAQLKSYFKPQIEDLYNPPN 167
LLTP FK +R QL Y++ I+++Y N
Sbjct: 629 RDLLTPTFKKKRPQLLKYYQSVIDEMYKTTN 659
>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 133 bits (337), Expect = 7e-37
Identities = 58/146 (39%), Positives = 95/146 (65%)
Query: 18 GALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLKSYIVAIVVPDVDV 77
G LKIIDRK+++ KL+QGEY+ E +E VY ++ V I+VYG+S KS +VA+VVP+ +
Sbjct: 507 GVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDSFKSMLVAVVVPNEEN 566
Query: 78 VKCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQN 137
A +NG G+ LC+ P++K+ I+ ++ + A ++ LR FE +K + L PF V+
Sbjct: 567 TNKWAKDNGFTGSFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVER 626
Query: 138 GLLTPNFKMQRAQLKSYFKPQIEDLY 163
L+T K +R L Y++ +I+++Y
Sbjct: 627 DLVTATLKKRRNNLLKYYQVEIDEMY 652
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid
metabolism].
Length = 613
Score = 123 bits (311), Expect = 2e-33
Identities = 53/151 (35%), Positives = 83/151 (54%), Gaps = 5/151 (3%)
Query: 16 ESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLKSYIVAIVVPDV 75
E G L I RK+ + KL+ G+ I PE IE+ +KS + QI V G+ K ++VA++VPD
Sbjct: 461 EDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVGDD-KKFLVALIVPDF 519
Query: 76 DVVKCKALENGIPGTLSV--LCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPF 133
D ++ A + S L DPK+ ++I+ + L FEQ+K L P F
Sbjct: 520 DALEKWAESLNKVISASREELARDPKLLKLILPRV--NKGNKRLFGFEQIKKFVLLPKEF 577
Query: 134 SVQNGLLTPNFKMQRAQLKSYFKPQIEDLYN 164
+ +NG LTP K++R + +K +IE +Y+
Sbjct: 578 TPENGELTPTLKLKRHVILDRYKDEIEAVYS 608
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and
Bubblegum-like very long-chain fatty acid CoA
synthetases. This family includes long-chain fatty acid
(C12-C20) CoA synthetases and Bubblegum-like very
long-chain (>C20) fatty acid CoA synthetases. FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
Eukaryotes generally have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells. Drosophila melanogaster
mutant bubblegum (BGM) have elevated levels of
very-long-chain fatty acids (VLCFA) caused by a
defective gene later named bubblegum. The human homolog
(hsBG) of bubblegum has been characterized as a very
long chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. Free fatty
acids must be "activated" to their CoA thioesters before
participating in most catabolic and anabolic reactions.
Length = 456
Score = 117 bits (295), Expect = 2e-31
Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 4/134 (2%)
Query: 16 ESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLKSYIVAIVVPDV 75
E G L I DRK+ + A G+ I P+ IE S Y+ Q V G+ Y+ A++V D
Sbjct: 323 EDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQAVVVGDDRP-YLTALIVLDP 381
Query: 76 DVVKCKALENGIPGT-LSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFS 134
+ ++ A ++G+P T + L DP+V+ +I +++ L EQ+K L P FS
Sbjct: 382 EALEKWAEQHGLPFTTYADLAEDPEVRALIRKEVE--EANARLARVEQIKKFVLLPKEFS 439
Query: 135 VQNGLLTPNFKMQR 148
+++G LTP K++R
Sbjct: 440 IEDGELTPTMKLRR 453
>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family
protein.
Length = 696
Score = 101 bits (253), Expect = 2e-25
Identities = 52/149 (34%), Positives = 82/149 (55%), Gaps = 1/149 (0%)
Query: 16 ESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLKSYIVAIVVPDV 75
G L+IIDRK+ I KL GEY+ K+EA S S YV I V+ + SY VA+VVP
Sbjct: 547 PDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPFHSYCVALVVPSQ 606
Query: 76 DVVKCKALENGIP-GTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFS 134
++ A + GI + LC + + + + ++ A+ L FE I L P+P++
Sbjct: 607 QALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPWT 666
Query: 135 VQNGLLTPNFKMQRAQLKSYFKPQIEDLY 163
++GL+T K++R Q++ FK ++ LY
Sbjct: 667 PESGLVTAALKLKREQIRKKFKDDLKKLY 695
>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional.
Length = 700
Score = 83.9 bits (208), Expect = 2e-19
Identities = 45/158 (28%), Positives = 80/158 (50%), Gaps = 16/158 (10%)
Query: 15 SESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKS---------LYVHQIFVYGESLKS 65
+ +G L+II R + + K GEYI E +EA+Y ++ + VH +S
Sbjct: 547 AANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVHP-------ARS 599
Query: 66 YIVAIVVPDVDVVKCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKD 125
YI A+V+ D A E+GI G + DP+ ++ E + AR G ++FE V+
Sbjct: 600 YICALVLTDEAKAMAFAKEHGIEGEYPAILKDPEFQKKATESLQETARAAGRKSFEIVRH 659
Query: 126 IYLHPDPFSVQNGLLTPNFKMQRAQLKSYFKPQIEDLY 163
+ + D ++ +NG+LT K++R + + I++L+
Sbjct: 660 VRVLSDEWTPENGVLTAAMKLKRRVIDERYADLIKELF 697
>gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional.
Length = 1452
Score = 76.0 bits (187), Expect = 1e-16
Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 8/143 (5%)
Query: 35 GEYIVPEKIEAVYSKSLYVHQIFVYGESLKSYIVAIVVPDVDVV-----KCKALENGIPG 89
EY++ ++E ++S+S YV+ IF+Y + + I+AIV P+ D V + + G
Sbjct: 867 YEYVIAAELERIFSQSRYVNDIFLYADPSRP-IIAIVSPNRDTVEFEWRQSHCMGEGGGP 925
Query: 90 TLSVLCAD--PKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQNGLLTPNFKMQ 147
+ + ++ D A A+++GL + ++LHP F + LTP K++
Sbjct: 926 ARQLGWTELVAYASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYGKIR 985
Query: 148 RAQLKSYFKPQIEDLYNPPNPTA 170
R + SYF IE Y+ T
Sbjct: 986 RDAVHSYFSSVIERFYSDVETTP 1008
>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA
synthetase (LC-FACS), including Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase.
The members of this family are bacterial long-chain
fatty acid CoA synthetase. Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase
in this family is involved in the synthesis of
isoprenoid wax ester storage compounds when grown on
phytol as the sole carbon source. LC-FACS catalyzes the
formation of fatty acyl-CoA in a two-step reaction: the
formation of a fatty acyl-AMP molecule as an
intermediate, and the formation of a fatty acyl-CoA.
Free fatty acids must be "activated" to their CoA
thioesters before participating in most catabolic and
anabolic reactions.
Length = 504
Score = 61.9 bits (151), Expect = 1e-11
Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 22/135 (16%)
Query: 16 ESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLKSYIVAIVVPDV 75
E G LKI R + +FK ++G+Y+ P IE + S + +V Q+ V G L VA+VV
Sbjct: 383 EDGFLKITGRVKELFKTSKGKYVAPAPIENLLSANPHVEQVCVVGSGLPQ-PVALVV--- 438
Query: 76 DVVKCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQ--DGLRNFEQVKDIYLHPDPF 133
L ADP ++ + E + + L + E++ + + + +
Sbjct: 439 -------LSEA---------ADPLEREEVEESLQQTLAKVNSELESHERLSALVVVKEAW 482
Query: 134 SVQNGLLTPNFKMQR 148
+V+NGLLTP K++R
Sbjct: 483 TVENGLLTPTLKIKR 497
>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 448
Score = 58.8 bits (143), Expect = 9e-11
Identities = 32/138 (23%), Positives = 61/138 (44%), Gaps = 29/138 (21%)
Query: 16 ESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLKSYIVAIVVPDV 75
E G L I RK+++ + G + PE +E+ ++ + Q V+G++ + ++VA++VP
Sbjct: 338 EEGYLYINGRKKNLIITSFGRNVSPEWVESELQQAPAIAQAVVFGDA-QPFLVALIVP-- 394
Query: 76 DVVKCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQ--DGLRNFEQVKDIYLHPDPF 133
+ + + A +Q L ++ ++K PF
Sbjct: 395 ------------------------APNISDDQLEAAVQQINAQLPDYARIKTWVRLRQPF 430
Query: 134 SVQNGLLTPNFKMQRAQL 151
S NGLLT N + +RA +
Sbjct: 431 STANGLLTANGRPRRAAI 448
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme.
Length = 412
Score = 46.2 bits (110), Expect = 2e-06
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 16 ESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFV 58
E G L+I+ RK K+ GE I P +IEAV + V + V
Sbjct: 371 EDGYLEILGRKDDQVKIR-GERIEPGEIEAVLLEHPGVAEAAV 412
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 43.9 bits (104), Expect = 1e-05
Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 18/165 (10%)
Query: 16 ESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLKSYIVAIVVPDV 75
++G+L +DR + + KL+QGEYI + + +YS+ +++ VYG+ +AI+ D
Sbjct: 582 KNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSMDGPLAIISVDK 641
Query: 76 DVV-KCKALENGIPGT-------LSVLCADPKVKQMIM-----EDMAAWARQDGLRNFEQ 122
++ KC +N + T L L D + I M ++ L +
Sbjct: 642 YLLFKCLKDDNMLESTGINEKNYLEKL-TDETINNNIYVDYVKGKMLEVYKKTNLNRYNI 700
Query: 123 VKDIYLHPDPFSVQNGLLTPNFKMQRAQL---KSYFKPQIEDLYN 164
+ DIYL + N LTP FK++R + ++F Q++ +Y
Sbjct: 701 INDIYLTSKVWDTNN-YLTPTFKVKRFYVFKDYAFFIDQVKKIYK 744
>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS). Feruloyl-CoA
synthetase is an essential enzyme in the feruloyl acid
degradation pathway and enables some proteobacteria to
grow on media containing feruloyl acid as the sole
carbon source. It catalyzes the transfer of CoA to the
carboxyl group of ferulic acid, which then forms
feruloyl-CoA in the presence of ATP and Mg2. The
resulting feruloyl-CoA is further degraded to vanillin
and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a
subfamily of the adenylate-forming enzymes superfamily.
Length = 559
Score = 41.5 bits (98), Expect = 9e-05
Identities = 34/143 (23%), Positives = 56/143 (39%), Gaps = 15/143 (10%)
Query: 30 FKLAQGEYIV--PEKIEAVYSKSLYVHQIFVYGESLKSYIVAIVVPDVDVVKCKALENGI 87
FKLA G ++ ++ V + + V V G + I +V P++ C+ L
Sbjct: 425 FKLASGTWVSVGALRVALVAALAPLVQDAVVAGHD-RDEIGLLVFPNLA--ACRRLAGLA 481
Query: 88 PGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQNGLLTP----N 143
+ + A P V++ + +AA R +V L +P S+ G +T N
Sbjct: 482 EASAEDVLAHPAVREALAARLAAHNRAAT--GSTRVTRALLLAEPPSIDAGEITDKGYIN 539
Query: 144 FKMQRAQLKSYFKPQIEDLYNPP 166
QRA L +E LY
Sbjct: 540 ---QRAVLARR-AALVERLYADE 558
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 534
Score = 40.9 bits (96), Expect = 2e-04
Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 33/140 (23%)
Query: 16 ESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLKSY---IVAIVV 72
E G L I+ R + + GE I PE+IEAV ++ V + V G + + +VA+VV
Sbjct: 413 EDGYLYIVGRLKDLIISG-GENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVV 471
Query: 73 PDVDVVKCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDP 132
PG + L A+ +++ + + +A + R V ++
Sbjct: 472 LK-------------PGGDAELTAE-ELRAFLRKRLALYKV---PRIVVFVDEL------ 508
Query: 133 FSVQNGLLTPNFKMQRAQLK 152
T + K+ R L+
Sbjct: 509 ------PRTASGKIDRRALR 522
>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 458
Score = 40.6 bits (96), Expect = 2e-04
Identities = 40/162 (24%), Positives = 66/162 (40%), Gaps = 48/162 (29%)
Query: 4 FLSKDKNEEIKSESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESL 63
F ++D+ E ++G L I+ R ++F + GE I PE+IE V ++ V Q+FV
Sbjct: 334 FATRDRGE---WQNGELTILGRLDNLF-FSGGEGIQPEEIERVINQHPLVQQVFV----- 384
Query: 64 KSYIVAIVVPD-------VDVVKCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDG 116
+ V D V VV+ + + ++A W QD
Sbjct: 385 ------VPVADAEFGQRPVAVVESDSEAA-------------------VVNLAEWL-QDK 418
Query: 117 LRNFEQVKDIYLHPDPFSVQNGLLTPNFKMQRAQLKSYFKPQ 158
L F+Q + + P ++NG K+ R LK + Q
Sbjct: 419 LARFQQ--PVAYYLLPPELKNG----GIKISRQALKEWVAQQ 454
>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA
synthetase (VL-FACS). This family of very long-chain
fatty acid CoA synthetase is named bubblegum because
Drosophila melanogaster mutant bubblegum (BGM) has
elevated levels of very-long-chain fatty acids (VLCFA)
caused by a defective gene of this family. The human
homolog (hsBG) has been characterized as a very long
chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. VL-FACS is
involved in the first reaction step of very long chain
fatty acid degradation. It catalyzes the formation of
fatty acyl-CoA in a two-step reaction: the formation of
a fatty acyl-AMP molecule as an intermediate, and the
formation of a fatty acyl-CoA. Free fatty acids must be
"activated" to their CoA thioesters before participating
in most catabolic and anabolic reactions.
Length = 594
Score = 38.1 bits (89), Expect = 0.001
Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 30/169 (17%)
Query: 18 GALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSL-YVHQIFVYGESLKSYIVAIVVPDVD 76
G L I R + + A GE + P IE K L + + G+ K ++ ++
Sbjct: 433 GFLYITGRIKELIITAGGENVPPVPIEEAVKKELPIISNAMLVGDKRK-FLSMLLT---- 487
Query: 77 VVKCKA-LENGIPG-------------------TLSVLCA--DPKVKQMIMEDMAAWARQ 114
+KC+ E G P T+S + A DP V + I E + +
Sbjct: 488 -LKCEVDPETGEPLDNLTEEAIEFCRLLGSHATTVSEILAGKDPLVYEAIEEGIKR-VNK 545
Query: 115 DGLRNFEQVKDIYLHPDPFSVQNGLLTPNFKMQRAQLKSYFKPQIEDLY 163
+ + N ++V+ + FSV G L P K++R + +K +I+ LY
Sbjct: 546 EAISNAQKVQKWVILEKDFSVPGGELGPTMKLKRPVVAKKYKDEIDKLY 594
>gnl|CDD|233277 TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic reticulum
calcium-translocating P-type ATPase. This model
describes the P-type ATPase responsible for
translocating calcium ions across the endoplasmic
reticulum membrane of eukaryotes , and is of particular
importance in the sarcoplasmic reticulum of skeletal and
cardiac muscle in vertebrates. These pumps transfer Ca2+
from the cytoplasm to the lumen of the endoplasmic
reticulum. In humans and mice, at least, there are
multiple isoforms of the SERCA pump with overlapping but
not redundant functions. Defects in SERCA isoforms are
associated with diseases in humans. The calcium P-type
ATPases have been characterized as Type IIA based on a
phylogenetic analysis which distinguishes this group
from the Type IIB PMCA calcium pump modelled by
TIGR01517. A separate analysis divides Type IIA into
sub-types, SERCA and PMR1 the latter of which is
modelled by TIGR01522 [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 917
Score = 34.4 bits (79), Expect = 0.023
Identities = 29/115 (25%), Positives = 41/115 (35%), Gaps = 18/115 (15%)
Query: 31 KLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLKSYIVAIVVPDVDVVKCKALENGIPGT 90
KLA E+ K +V K +++FV G P+ + +C + NG G
Sbjct: 422 KLATLEFSRDRKSMSVLCKPSTGNKLFVKG-----------APEGVLERCTHILNG-DGR 469
Query: 91 LSVLCADPKVKQMIMEDMAAWARQDGLRNFE-QVKDIYLHPDPFSVQNGLLTPNF 144
L K+K I+ + LR KDI PDP NF
Sbjct: 470 AVPL--TDKMKNTILSVIKEMGTTKALRCLALAFKDI---PDPREEDLLSDPANF 519
>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase.
Length = 563
Score = 33.6 bits (77), Expect = 0.041
Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 21/141 (14%)
Query: 16 ESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLKSYIVAIVVPDV 75
++G L +I R K GE + PE++EAV S+ V + V G VPD
Sbjct: 426 KAGNLWLIGRSNDRIK-TGGENVYPEEVEAVLSQHPGVASVVVVG-----------VPDS 473
Query: 76 D----VVKCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPD 131
VV C L +G + + K + E + R+ L F+ K
Sbjct: 474 RLTEMVVACVRLRDGWIWSDNEKENAKKNLTLSSETLRHHCREKNLSRFKIPKLFVQWRK 533
Query: 132 PFSVQNGLLTPNFKMQRAQLK 152
PF LT K++R +++
Sbjct: 534 PFP-----LTTTGKIRRDEVR 549
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as
O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or
MenE). O-succinylbenzoic acid-CoA synthase catalyzes
the coenzyme A (CoA)- and ATP-dependent conversion of
o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The
reaction is the fourth step of the biosynthesis pathway
of menaquinone (vitamin K2). In certain bacteria,
menaquinone is used during fumarate reduction in
anaerobic respiration. In cyanobacteria, the product of
the menaquinone pathway is phylloquinone
(2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used
exclusively as an electron transfer cofactor in
Photosystem 1. In green sulfur bacteria and
heliobacteria, menaquinones are used as loosely bound
secondary electron acceptors in the photosynthetic
reaction center.
Length = 407
Score = 32.9 bits (76), Expect = 0.071
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 4 FLSKDKNEEIKSESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESL 63
F + D G L ++ R+ + ++ GE I PE+IEAV + V + V G
Sbjct: 290 FHTGDLGY--LDAEGYLYVLGRRDDLI-ISGGENIYPEEIEAVLLQHPAVEEAAVVGVPD 346
Query: 64 KSY---IVAIVVPDVDVVKCKALENGIPGTLS 92
+ VA VVP+ D V + L+ + L+
Sbjct: 347 DEWGQRPVAFVVPNDDPVSVEELQAFLADKLA 378
>gnl|CDD|237773 PRK14636, PRK14636, hypothetical protein; Provisional.
Length = 176
Score = 31.3 bits (71), Expect = 0.16
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 67 IVAIVVPDV-----DVVKCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQ--DGLRN 119
+ A++ P+ D+V+ TL ++ P +Q+++ED AA +R+ D
Sbjct: 7 LTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERPDTRQLVIEDCAALSRRLSDVFDE 66
Query: 120 FEQVKDIY 127
+ ++D Y
Sbjct: 67 LDPIEDAY 74
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I. This
family includes acyl- and aryl-CoA ligases, as well as
the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The
adenylate-forming enzymes catalyze an ATP-dependent
two-step reaction to first activate a carboxylate
substrate as an adenylate and then transfer the
carboxylate to the pantetheine group of either coenzyme
A or an acyl-carrier protein. The active site of the
domain is located at the interface of a large N-terminal
subdomain and a smaller C-terminal subdomain.
Length = 338
Score = 31.1 bits (71), Expect = 0.28
Identities = 28/135 (20%), Positives = 45/135 (33%), Gaps = 35/135 (25%)
Query: 16 ESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYG---ESLKSYIVAIVV 72
E G L I R + + K+ GE + P ++E+V + V + V G E IVA VV
Sbjct: 236 EEGYLYITGRSKDLIKVG-GENVYPAEVESVLLQHPAVAEAAVVGVPDEDRGERIVAFVV 294
Query: 73 PDVDVVKCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDP 132
G E++ A R+ ++ + I
Sbjct: 295 L----------RPGADALA--------------EELKAHLRERLAP-YKVPRVIEF---- 325
Query: 133 FSVQNGLLTPNFKMQ 147
V T + K+
Sbjct: 326 --VDELPKTASGKID 338
>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed.
Length = 452
Score = 30.3 bits (69), Expect = 0.52
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Query: 15 SESGALKIIDRK-RHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLKSY---IVAI 70
G L I+ R + I + GE + P ++EA + V + V G + + AI
Sbjct: 335 DAQGYLHILGRNSQKI--ITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAI 392
Query: 71 VVPDVDVVKCKALENGIPGTLS 92
VP + + L+ I LS
Sbjct: 393 YVPKDPSISLEELKTAIKDQLS 414
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase. This model
represents an enzyme, O-succinylbenzoate-CoA ligase,
which is involved in the fourth step of the menaquinone
biosynthesis pathway. O-succinylbenzoate-CoA ligase,
together with menB - naphtoate synthase, take
2-succinylbenzoate and convert it into 1,4-di-hydroxy-2-
naphtoate [Biosynthesis of cofactors, prosthetic groups,
and carriers, Menaquinone and ubiquinone].
Length = 436
Score = 30.1 bits (68), Expect = 0.54
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 18 GALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFV-------YGESLKSYIVA 69
G L ++ R+ + ++ GE I PE+IE V + + + V +G+ +YIV+
Sbjct: 334 GFLYVLGRRDDLI-ISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVS 391
>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated.
Length = 534
Score = 29.9 bits (67), Expect = 0.82
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 15 SESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYGESLKSY---IVAIV 71
S +G L I R + + GE I PE++E V + V + V+G + Y + A++
Sbjct: 419 SAAGDLSIRGRIKELINRG-GEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVI 477
Query: 72 VP 73
VP
Sbjct: 478 VP 479
>gnl|CDD|223492 COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication,
recombination, and repair].
Length = 461
Score = 29.6 bits (67), Expect = 0.87
Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 6/102 (5%)
Query: 67 IVAIVVPDVDVVKCKALENGIPGTLSVL----CADPKVKQMIMEDMAAWARQDGLRNFEQ 122
I D + + + G V A +++ + A D LR+ E
Sbjct: 120 IAVHSFWDALLHEPGEVRTGSGEPYKVFTPFYKAWRDRLRIL-RPVPAPDVLDALRDEEP 178
Query: 123 VKDIYLHPDPFSVQNGLLTPNFKMQRAQLKSYFKPQIEDLYN 164
+ PD L T K A+L+ + ++D Y
Sbjct: 179 PPEEISLPDFSKFDVLLFTGGEKAALARLQDFLAEGLDD-YE 219
>gnl|CDD|216290 pfam01082, Cu2_monooxygen, Copper type II ascorbate-dependent
monooxygenase, N-terminal domain. The N and C-terminal
domains of members of this family adopt the same PNGase
F-like fold.
Length = 128
Score = 28.4 bits (64), Expect = 1.1
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Query: 28 HIFKLAQGE---YIVPEKIEAVYSKSLYVHQIFVYG 60
IFKL +IV + E V + VH + +YG
Sbjct: 20 TIFKLPTDNRKHHIV--RFEPVATSGDLVHHMLLYG 53
>gnl|CDD|220106 pfam09087, Cyc-maltodext_N, Cyclomaltodextrinase, N-terminal.
Members of this family assume a beta-sandwich structure
composed of the eight antiparallel beta-strands. A ten
residue linker is also present at the C-terminal end,
which connects the N terminal domain to a distal domain
in the protein. This domain participates in
oligomerisation of the protein, wherein the N-terminal
domain of one subunit contacts the active centre of the
other subunit, and is also required for binding of
cyclodextrin to substrate.
Length = 88
Score = 27.6 bits (62), Expect = 1.4
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 55 QIFVYGESLKSYIVAIVVPDVDVVKCKALEN 85
Q+ VYG+++ SY V++ P V + +N
Sbjct: 17 QLMVYGKNIASYEVSLSYPGVTLKSVVKTDN 47
>gnl|CDD|177942 PLN02307, PLN02307, phosphoglucomutase.
Length = 579
Score = 28.5 bits (64), Expect = 2.3
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 11/60 (18%)
Query: 40 PEKI-EAVYSKSLYVHQIFVYGESLKSYIVAIVVPDVDVVKCKALENGIPGTLSVLCADP 98
PE I + +Y +L ++K Y +A +PDVD+ + G P V DP
Sbjct: 150 PESITDKIYGNTL----------TIKEYKMAEDIPDVDLSAVGVTKFGGPEDFDVEVIDP 199
>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.
Length = 513
Score = 28.3 bits (64), Expect = 2.5
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 28/71 (39%)
Query: 16 ESGALKIIDRKRHIFKLAQGEYIV------PEKIEAVYSKSLYVH----QIFV------- 58
E G L I+DRK+ +F IV P ++E V LY H + V
Sbjct: 404 EEGYLYIVDRKKDMF-------IVGGFNVYPAEVEEV----LYEHPAVAEAAVIGVPDER 452
Query: 59 YGESLKSYIVA 69
GE K+Y+V
Sbjct: 453 LGEVGKAYVVL 463
>gnl|CDD|225095 COG2184, Fic, Protein involved in cell division [Cell division and
chromosome partitioning].
Length = 201
Score = 27.8 bits (62), Expect = 2.7
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 7/51 (13%)
Query: 102 QMIMEDMAAWARQDGLRNFEQVKDIY-----LHPDPFSVQNGLLTPNFKMQ 147
+ ++ W Q+ E+ Y H PF NG T F
Sbjct: 98 ERALDYAEQWMPQETYDFVERAAHKYVEINIAH--PFREGNGRSTRIFLDL 146
>gnl|CDD|233480 TIGR01579, MiaB-like-C, MiaB-like tRNA modifying enzyme. This
clade of sequences is closely related to MiaB, a
modifier of isopentenylated adenosine-37 of certain
eukaryotic and bacterial tRNAs (see TIGR01574). Sequence
alignments suggest that this equivalog performs the same
chemical transformation as MiaB, perhaps on a different
(or differently modified) tRNA base substrate. This
clade is a member of a subfamily (TIGR00089) and spans
low GC Gram positive bacteria, alpha and epsilon
proteobacteria, Campylobacter, Porphyromonas, Aquifex,
Thermotoga, Chlamydia, Treponema and Fusobacterium
[Protein synthesis, tRNA and rRNA base modification].
Length = 414
Score = 27.7 bits (62), Expect = 3.2
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 114 QDGLRNFEQVKDIYLHPDPFSVQNGLLTPNFKMQR 148
Q+ LR ++++ +LH P+S + G TP M+
Sbjct: 308 QETLRMVKEIEFSHLHIFPYSARPG--TPASTMKD 340
>gnl|CDD|223512 COG0435, ECM4, Predicted glutathione S-transferase
[Posttranslational modification, protein turnover,
chaperones].
Length = 324
Score = 26.9 bits (60), Expect = 5.4
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 79 KCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDP 132
K LE I +SV+ + A D L E++ +Y DP
Sbjct: 71 ALKGLEPVIS--VSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADP 122
>gnl|CDD|226784 COG4334, COG4334, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 131
Score = 26.1 bits (57), Expect = 7.2
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 105 MEDMAAWARQDGLRNFEQVKDIYLHPDP 132
M M W + D L+ ++ D+Y+ P
Sbjct: 1 MLPMNIW-KIDELKKISKIDDLYISPFR 27
>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein
Serine/Threonine Kinase, cGMP-dependent protein kinase.
Serine/Threonine Kinases (STKs), cGMP-dependent
protein kinase (cGK or PKG) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The cGK subfamily is
part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Mammals have two cGK
isoforms from different genes, cGKI and cGKII. cGKI
exists as two splice variants, cGKI-alpha and
cGKI-beta. cGK consists of an N-terminal regulatory
domain containing a dimerization and an autoinhibitory
pseudosubstrate region, two cGMP-binding domains, and a
C-terminal catalytic domain. Binding of cGMP to both
binding sites releases the inhibition of the catalytic
center by the pseudosubstrate region, allowing
autophosphorylation and activation of the kinase. cGKI
is a soluble protein expressed in all smooth muscles,
platelets, cerebellum, and kidney. It is also expressed
at lower concentrations in other tissues. cGKII is a
membrane-bound protein that is most abundantly
expressed in the intestine. It is also present in the
brain nuclei, adrenal cortex, kidney, lung, and
prostate. cGKI is involved in the regulation of smooth
muscle tone, smooth cell proliferation, and platelet
activation. cGKII plays a role in the regulation of
secretion, such as renin secretion by the kidney and
aldosterone secretion by the adrenal. It also regulates
bone growth and the circadian rhythm.
Length = 262
Score = 26.4 bits (59), Expect = 7.7
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 12 EIKSESGALKIIDRKRHIFKLAQGEYIVPEK 42
+ K+ + ALK + +KRHI + Q E+I EK
Sbjct: 15 KSKNRTFALKCV-KKRHIVETGQQEHIFSEK 44
>gnl|CDD|219075 pfam06534, RGM_C, Repulsive guidance molecule (RGM) C-terminus.
This family consists of several mammalian and one bird
sequence from Gallus gallus (Chicken). This family
represents the C-terminal region of several sequences
but in others it represents the full protein. All of the
mammalian proteins are hypothetical and have no known
function but RGMA from the chicken is annotated as being
a repulsive guidance molecule (RGM). RGM is a GPI-linked
axon guidance molecule of the retinotectal system. RGM
is repulsive for a subset of axons, those from the
temporal half of the retina. Temporal retinal axons
invade the anterior optic tectum in a superficial layer,
and encounter RGM expressed in a gradient with
increasing concentration along the anterior-posterior
axis. Temporal axons are able to receive
posterior-dependent information by sensing gradients or
concentrations of guidance cues. Thus, RGM is likely to
provide positional information for temporal axons
invading the optic tectum in the stratum opticum.
Length = 213
Score = 26.3 bits (58), Expect = 8.6
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 95 CADPKVKQMIMEDMAAWARQDGLRN 119
C D KV Q +D+ A A DG +N
Sbjct: 3 CTDQKVYQAETDDLPA-AFVDGSKN 26
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.389
Gapped
Lambda K H
0.267 0.0586 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,106,994
Number of extensions: 847442
Number of successful extensions: 760
Number of sequences better than 10.0: 1
Number of HSP's gapped: 745
Number of HSP's successfully gapped: 51
Length of query: 174
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 84
Effective length of database: 6,945,742
Effective search space: 583442328
Effective search space used: 583442328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.7 bits)