RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2420
(174 letters)
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
sp. [TaxId: 512]}
Length = 503
Score = 49.3 bits (116), Expect = 5e-08
Identities = 29/141 (20%), Positives = 49/141 (34%), Gaps = 36/141 (25%)
Query: 16 ESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYG---ESLKSYIVAIVV 72
G ++I+ R + GE I P +IE V + V ++ V G + + A VV
Sbjct: 391 PEGTVRILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVV 449
Query: 73 PDVDVVKCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPD- 131
P + TLS + + + R L +F++ K ++
Sbjct: 450 PRLG------------ETLSA------------DALDTFCRSSELADFKRPKRYFILDQL 485
Query: 132 PFSVQNGLLTPNFKMQRAQLK 152
P K+ R QL
Sbjct: 486 P-------KNALNKVLRRQLV 499
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 47.9 bits (113), Expect = 1e-07
Identities = 27/161 (16%), Positives = 53/161 (32%), Gaps = 28/161 (17%)
Query: 16 ESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYG---ESLKSYIVAIVV 72
+ G + I+ R + + G + +IEA + V + V G + + A VV
Sbjct: 492 KDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVV 550
Query: 73 PDVDVVKCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDP 132
A ++ + L + +D+ +A + V D+ P
Sbjct: 551 LKNKSSWSTATDDELQDIKKHL------VFTVRKDIGPFAA---PKLIILVDDL---P-- 596
Query: 133 FSVQNGLLTPNFKMQRAQLKSYFKPQIEDLYNPP---NPTA 170
T + K+ R L+ + + L + NP
Sbjct: 597 -------KTRSGKIMRRILRKILAGESDQLGDVSTLSNPGI 630
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 46.8 bits (110), Expect = 4e-07
Identities = 23/145 (15%), Positives = 43/145 (29%), Gaps = 37/145 (25%)
Query: 16 ESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYG---ESLKSYIVAIVV 72
E G ++I DR + + K GE+I +E V + V + +A+VV
Sbjct: 417 EEGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVV 475
Query: 73 PDVDVVKCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPD- 131
P + E++ + G ++ +
Sbjct: 476 PRGEKP-------------------------TPEELNEHLLKAGFAKWQLPDAYVFAEEI 510
Query: 132 PFSVQNGLLTPNFKMQRAQLKSYFK 156
P T K + L+ +K
Sbjct: 511 P-------RTSAGKFLKRALREQYK 528
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 46.4 bits (109), Expect = 4e-07
Identities = 24/140 (17%), Positives = 50/140 (35%), Gaps = 37/140 (26%)
Query: 16 ESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYG---ESLKSYIVAIVV 72
G ++ + R + K+ G + E++E++ K +Y+ + V + Y+ A V
Sbjct: 403 SDGNIEYLGRIDNQVKIR-GHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFV 461
Query: 73 PDVDVVKCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDP 132
+ + +++Q E++ + F Q+ + P
Sbjct: 462 SEKHI------------------PLEQLRQFSSEELPTYMI---PSYFIQLDKM---P-- 495
Query: 133 FSVQNGLLTPNFKMQRAQLK 152
LT N K+ R QL
Sbjct: 496 -------LTSNGKIDRKQLP 508
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 46.2 bits (109), Expect = 5e-07
Identities = 22/161 (13%), Positives = 44/161 (27%), Gaps = 35/161 (21%)
Query: 16 ESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYG---ESLKSYIVAIVV 72
E G I R + ++ G + +IE+ + + V G I A V
Sbjct: 502 EDGYYWITGRVDDVLNVS-GHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVT 560
Query: 73 PDVDVVKCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDP 132
+ L +V+ + +++ A + P
Sbjct: 561 LNHGEEPSPELYA-------------EVRNWVRKEIGPLAT---PDVLHWTDSL---P-- 599
Query: 133 FSVQNGLLTPNFKMQRAQLKSYFKPQIEDLYNPP---NPTA 170
T + K+ R L+ +L + +P
Sbjct: 600 -------KTRSGKIMRRILRKIAAGDTSNLGDTSTLADPGV 633
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
subtilis [TaxId: 1423]}
Length = 536
Score = 43.8 bits (102), Expect = 3e-06
Identities = 19/149 (12%), Positives = 42/149 (28%), Gaps = 37/149 (24%)
Query: 16 ESGALKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYG---ESLKSYIVAIVV 72
G + + R + GE + E++E VH + + L ++
Sbjct: 419 RDGYIVVEGRAKDQINRG-GEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFII 477
Query: 73 PDVDVVKCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPD- 131
P + K ++ A+ R+ GL ++ +
Sbjct: 478 PRDEAPK-------------------------AAELKAFLRERGLAAYKIPDRVEFVESF 512
Query: 132 PFSVQNGLLTPNFKMQRAQLKSYFKPQIE 160
P T K+ + L+ ++
Sbjct: 513 P-------QTGVGKVSKKALREAISEKLL 534
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 43.7 bits (102), Expect = 4e-06
Identities = 17/140 (12%), Positives = 40/140 (28%), Gaps = 36/140 (25%)
Query: 20 LKIIDRKRHIFKLAQGEYIVPEKIEAVYSKSLYVHQIFVYG---ESLKSYIVAIVVPDVD 76
I+DR + + K G + P ++E++ + + V G + A+VV +
Sbjct: 429 FFIVDRLKSLIKYK-GYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHG 487
Query: 77 VVKCKALENGIPGTLSVLCADPKVKQMIMEDMAAWARQDGLRNFEQVKDIYLHPDPFSVQ 136
K M +++ + QV
Sbjct: 488 ------------------------KTMTEKEIVDYVA-------SQVTTAKKLRGGVVFV 516
Query: 137 NGL-LTPNFKMQRAQLKSYF 155
+ + K+ +++
Sbjct: 517 DEVPKGLTGKLDARKIREIL 536
>d1h3ga1 b.1.18.2 (A:3-95) Cyclomaltodextrinase, N-terminal domain
{Flavobacterium sp. 92 [TaxId: 197856]}
Length = 93
Score = 28.5 bits (64), Expect = 0.17
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 55 QIFVYGESLKSYIVAIVVPDVDVVKCKALENG 86
Q+ V+G + A+ P V +V + N
Sbjct: 22 QLMVHGRDIGRMEAALDYPGVRLVSTTRVPNA 53
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 26.3 bits (58), Expect = 1.6
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 96 ADPKVKQMIMEDMAAWARQDGLRNFEQVKDIY 127
A KVK ++E + +W +++D Y
Sbjct: 99 ATGKVKGRVIEILFSWT--VWFPEDIKIRDAY 128
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 25.8 bits (55), Expect = 3.4
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 83 LENGIPGTLSVLCADPKV-KQMIMEDMAA 110
L N + GT+ L + K M+ +AA
Sbjct: 23 LPNMVAGTVGALVSPGGAGKSMLALQLAA 51
>d1ihpa_ c.60.1.2 (A:) Phytase
(myo-inositol-hexakisphosphate-3-phosphohydrolase)
{Aspergillus ficuum [TaxId: 5058]}
Length = 438
Score = 25.6 bits (55), Expect = 3.9
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 127 YLHPDPFSVQNGLLTPNFKMQRAQLKSYFKPQIEDLYNPPNP 168
+L +S+ LTP + + F + E L P
Sbjct: 86 FLKTYNYSLGADDLTPFGEQELVNSGIKFYQRYESLTRNIVP 127
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 151
Score = 24.8 bits (54), Expect = 4.2
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 97 DPKVKQMIMEDMAAWARQDGLRNFEQVKDIY 127
KVK ++E + +W L ++KD Y
Sbjct: 101 SEKVKTKVIELLYSWT--MALPEEAKIKDAY 129
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 145
Score = 24.8 bits (54), Expect = 4.9
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 97 DPKVKQMIMEDMAAWARQDGLRNFEQVKDIY 127
KVK I+E + +W GL ++ + Y
Sbjct: 107 SEKVKNKILELLYSWT--VGLPEEVKIAEAY 135
>d1zj8a2 d.58.36.1 (A:10-161) Sulfite reductase NirA
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 152
Score = 24.1 bits (52), Expect = 8.3
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 9 KNEEIKSESGALKIIDRKRHIFK 31
NEE+K L + +R +I+
Sbjct: 16 ANEELKKAGNPLDVRERIENIYA 38
>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
lactis, isozyme A [TaxId: 1358]}
Length = 311
Score = 24.2 bits (51), Expect = 9.2
Identities = 4/28 (14%), Positives = 11/28 (39%)
Query: 97 DPKVKQMIMEDMAAWARQDGLRNFEQVK 124
P + I++++ Q G ++
Sbjct: 278 GPAIFDRIIKELEEIMNQKGYQSIADFH 305
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.389
Gapped
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 672,199
Number of extensions: 31063
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 20
Length of query: 174
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,322,926
Effective search space: 125677970
Effective search space used: 125677970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.8 bits)