Query psy2422
Match_columns 305
No_of_seqs 158 out of 272
Neff 4.1
Searched_HMMs 13730
Date Sat Aug 17 00:34:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2422.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2422hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oyza_ a.118.1.16 (A:) Hypoth 15.5 1.1E+02 0.0077 22.9 5.2 14 95-108 62-75 (276)
2 d2vglb_ a.118.1.10 (B:) Adapti 11.4 96 0.007 27.7 4.3 47 70-116 481-533 (579)
3 d1xg8a_ c.47.1.17 (A:) Hypothe 10.0 65 0.0047 24.5 2.1 44 113-162 28-84 (111)
4 d2e74d2 f.23.12.1 (D:12-45) IS 9.3 62 0.0045 19.7 1.4 7 100-106 19-25 (34)
5 d2zkmx1 a.39.1.7 (X:142-311) P 9.2 35 0.0026 26.0 0.3 17 140-156 143-159 (170)
6 d1wdcb_ a.39.1.5 (B:) Myosin E 8.9 3.1E+02 0.022 19.1 7.0 75 68-153 26-104 (142)
7 d2croa_ a.35.1.2 (A:) cro 434 7.3 64 0.0047 20.7 0.9 43 41-83 16-59 (65)
8 d1aiha_ d.163.1.1 (A:) Integra 6.9 2.4E+02 0.017 20.4 4.3 74 82-155 7-83 (170)
9 d2nuga1 a.149.1.1 (A:3-150) RN 6.5 1.3E+02 0.0097 22.3 2.6 26 101-126 110-135 (148)
10 d2cx1a2 d.17.6.4 (A:1-90) Hypo 6.1 74 0.0054 22.6 0.7 32 115-146 24-63 (90)
No 1
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}
Probab=15.53 E-value=1.1e+02 Score=22.92 Aligned_cols=14 Identities=21% Similarity=0.375 Sum_probs=7.2
Q ss_pred CchhHHHHHHhHHh
Q psy2422 95 EFKYVRALGAYYMR 108 (305)
Q Consensus 95 d~KYIRALG~LYLR 108 (305)
..++||..++..|-
T Consensus 62 ~~~~vr~~a~~aL~ 75 (276)
T d1oyza_ 62 KNYIRRDIGAFILG 75 (276)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 44555555555543
No 2
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.38 E-value=96 Score=27.68 Aligned_cols=47 Identities=11% Similarity=0.213 Sum_probs=35.4
Q ss_pred hhhhhhhhcccCCC--HHHHHHHhh----CCCchhHHHHHHhHHhhccchhHH
Q psy2422 70 FLCLILKMLQIQPE--KDIVVEFIK----NEEFKYVRALGAYYMRLTGSSVDC 116 (305)
Q Consensus 70 F~CLL~KLlqL~Pt--~eqI~~~L~----~~d~KYIRALG~LYLRl~~~p~dv 116 (305)
.+=.+.|||--+|+ .+++...|+ ..+++++|..|++|.|+.....+.
T Consensus 481 iLta~~Kl~~~~p~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (579)
T d2vglb_ 481 LLTAIVKLFLKKPSETQELVQQVLSXXXXXXXXXXXXXXXXXXXXXXXXXXXX 533 (579)
T ss_dssp HHHHHHHHHTTCCSTTHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTTTCTTH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhhccccccchhhhhhhhhhhhhhhhhhhh
Confidence 34468899888885 356666654 469999999999999998775444
No 3
>d1xg8a_ c.47.1.17 (A:) Hypothetical protein SA0798 {Staphylococcus aureus [TaxId: 1280]}
Probab=9.96 E-value=65 Score=24.47 Aligned_cols=44 Identities=27% Similarity=0.487 Sum_probs=29.8
Q ss_pred hhHHHHHhhhhhhcchhhhhccCCCCeeeeeH-------------HHHHHHHhhcCccccCCC
Q psy2422 113 SVDCYKYLEPLFADSRKLRFQNRQGAFEVIHM-------------DEYIDQLLREERMCDVIL 162 (305)
Q Consensus 113 p~dvy~~LEPyl~DyRKLr~~~~~G~~~l~~m-------------DEfVd~LLtedr~~dtiL 162 (305)
+.+-|+||++.|. ||..- -.|.+++| .+|+..++.++.|+-+++
T Consensus 28 SkeTyEWLqaal~--RKyp~----~~f~~~YiDi~~~~~~~~~~~~~~ae~I~ede~FYPlV~ 84 (111)
T d1xg8a_ 28 SKDIYDWLQPLLK--RKYPN----ISFKYTYIDITKDNDNLTDHDLQFIERIEQDELFYPLIT 84 (111)
T ss_dssp HHHHHHHHHHHHH--HHCTT----SCEEEEEEETTTC---CCHHHHHHHHHHHTTSSCSSEEE
T ss_pred chhHHHHHHHHHh--CcCCC----CceEEEEEeccCCcccccHHHHHHHHHHhhccceeeEEE
Confidence 6788999999875 44432 22444433 369999999998875543
No 4
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=9.34 E-value=62 Score=19.67 Aligned_cols=7 Identities=71% Similarity=1.009 Sum_probs=5.7
Q ss_pred HHHHHhH
Q psy2422 100 RALGAYY 106 (305)
Q Consensus 100 RALG~LY 106 (305)
.|||+||
T Consensus 19 ~alg~ly 25 (34)
T d2e74d2 19 VALGALY 25 (34)
T ss_dssp HHHHHHH
T ss_pred HHHhhhh
Confidence 5788888
No 5
>d2zkmx1 a.39.1.7 (X:142-311) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.24 E-value=35 Score=26.02 Aligned_cols=17 Identities=12% Similarity=-0.001 Sum_probs=13.9
Q ss_pred eeeeHHHHHHHHhhcCc
Q psy2422 140 EVIHMDEYIDQLLREER 156 (305)
Q Consensus 140 ~l~~mDEfVd~LLtedr 156 (305)
..+++++|+.-|+.++.
T Consensus 143 ~~ls~d~F~~fL~S~en 159 (170)
T d2zkmx1 143 GQLSPEGMVWFLCGPEN 159 (170)
T ss_dssp --CCHHHHHHHHHSTTS
T ss_pred CeECHHHHHHHHcCccC
Confidence 35999999999999984
No 6
>d1wdcb_ a.39.1.5 (B:) Myosin Essential Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}
Probab=8.87 E-value=3.1e+02 Score=19.10 Aligned_cols=75 Identities=13% Similarity=0.175 Sum_probs=41.2
Q ss_pred CchhhhhhhhcccCCCHHHHHHHhhCCCc--hhHHHHHHhHHhhccc--hhHHHHHhhhhhhcchhhhhccCCCCeeeee
Q psy2422 68 TPFLCLILKMLQIQPEKDIVVEFIKNEEF--KYVRALGAYYMRLTGS--SVDCYKYLEPLFADSRKLRFQNRQGAFEVIH 143 (305)
Q Consensus 68 S~F~CLL~KLlqL~Pt~eqI~~~L~~~d~--KYIRALG~LYLRl~~~--p~dvy~~LEPyl~DyRKLr~~~~~G~~~l~~ 143 (305)
..-|+.+++.+-+.|+.+.|..++.+.+. -|---+.++--.+... ...+... ++....+|+ ..|+
T Consensus 26 ~~el~~~l~~lg~~~~~~el~~~~~~~~~~i~~~eF~~~~~~~~~~~~~~~~l~~a----------F~~~D~d~~-G~I~ 94 (142)
T d1wdcb_ 26 KEDIKAISEQLGRAPDDKELTAMLKEAPGPLNFTMFLSIFSDKLSGTDSEETIRNA----------FAMFDEQET-KKLN 94 (142)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHTTSSSCCCHHHHHHHHHHHTCSCCCHHHHHHH----------HHTTCTTCC-SCEE
T ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHhccCccccccccccccccccccchhhhHHHh----------hhhhcccCC-Cccc
Confidence 34456677778899999999999975431 1222222221122221 1223322 233334554 4699
Q ss_pred HHHHHHHHhh
Q psy2422 144 MDEYIDQLLR 153 (305)
Q Consensus 144 mDEfVd~LLt 153 (305)
..||...|.+
T Consensus 95 ~~el~~~l~~ 104 (142)
T d1wdcb_ 95 IEYIKDLLEN 104 (142)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999886643
No 7
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=7.29 E-value=64 Score=20.69 Aligned_cols=43 Identities=26% Similarity=0.259 Sum_probs=26.9
Q ss_pred hcchHHHHHHH-hhccccccccCCCCCCCchhhhhhhhcccCCC
Q psy2422 41 ALSAELLVDKA-MELRYIGGVFGGNIKPTPFLCLILKMLQIQPE 83 (305)
Q Consensus 41 ~Lt~etvVDei-veV~~iGg~~ggn~~PS~F~CLL~KLlqL~Pt 83 (305)
++|.+++-+.+ +....++-|-.|...|+.++=-+.+.|.+.|+
T Consensus 16 gltq~~lA~~~gvs~~ti~~~E~g~~~~~~~l~~ia~~l~v~~~ 59 (65)
T d2croa_ 16 KMTQTELATKAGVKQQSIQLIEAGVTKRPRFLFEIAMALNCDPV 59 (65)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHTTCCSSCTTHHHHHHHTTSCHH
T ss_pred CCCHHHHHHHHCcCHhHHHHHHCCCCCCHHHHHHHHHHhCCCHH
Confidence 67888877777 54455555444444567666566666666654
No 8
>d1aiha_ d.163.1.1 (A:) Integrase {Bacteriophage HP1 [TaxId: 10690]}
Probab=6.91 E-value=2.4e+02 Score=20.36 Aligned_cols=74 Identities=3% Similarity=-0.030 Sum_probs=39.6
Q ss_pred CCHHHHHHHhh---CCCchhHHHHHHhHHhhccchhHHHHHhhhhhhcchhhhhccCCCCeeeeeHHHHHHHHhhcC
Q psy2422 82 PEKDIVVEFIK---NEEFKYVRALGAYYMRLTGSSVDCYKYLEPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREE 155 (305)
Q Consensus 82 Pt~eqI~~~L~---~~d~KYIRALG~LYLRl~~~p~dvy~~LEPyl~DyRKLr~~~~~G~~~l~~mDEfVd~LLted 155 (305)
++.++|..++. ...++.++++..|=+---..+.|+...=-.-+++.+-+-...+.|....+.|..-+-.+|...
T Consensus 7 Lt~eEi~~l~~~~~~~~~~~~~~~i~l~~~tG~R~~E~~~L~~~dI~~~~~~~~~~K~~~~r~ipl~~~~~~~l~~~ 83 (170)
T d1aiha_ 7 LYERDIYRLLAECDNSRNPDLGLIVRICLATGARWSEAETLTQSQVMPYKITFTNTKSKKNRTVPISDELFDMLPKK 83 (170)
T ss_dssp CCHHHHHHHHHHHTTSSSTTHHHHHHHHHHHCCCHHHHHTCBTTTEETTEEEEESSSSSCEEEEECCHHHHHHSCCC
T ss_pred CCHHHHHHHHHHhhhcCChhHHHHHHHHHHHCCchhhhhhhhhhcccccceeeccccccchhHHhhHHHHHHHHHhh
Confidence 46777777775 335677776554433344456777332111122222222344556556777777777776543
No 9
>d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]}
Probab=6.46 E-value=1.3e+02 Score=22.27 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=19.2
Q ss_pred HHHHhHHhhccchhHHHHHhhhhhhc
Q psy2422 101 ALGAYYMRLTGSSVDCYKYLEPLFAD 126 (305)
Q Consensus 101 ALG~LYLRl~~~p~dvy~~LEPyl~D 126 (305)
.+||+|+---.....+++|+.+++.+
T Consensus 110 iiGAiylD~g~~~~~~~~~i~~l~~~ 135 (148)
T d2nuga1 110 LWAAVYIDSGRDANFTRELFYKLFKE 135 (148)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhhhccCCCHHHHHHHHHHHHHH
Confidence 37999987666667778888777654
No 10
>d2cx1a2 d.17.6.4 (A:1-90) Hypothetical protein APE0525, N-terminal domain {Archaeon Aeropyrum pernix [TaxId: 56636]}
Probab=6.12 E-value=74 Score=22.63 Aligned_cols=32 Identities=25% Similarity=0.561 Sum_probs=21.3
Q ss_pred HHHHHhhhhhh--------cchhhhhccCCCCeeeeeHHH
Q psy2422 115 DCYKYLEPLFA--------DSRKLRFQNRQGAFEVIHMDE 146 (305)
Q Consensus 115 dvy~~LEPyl~--------DyRKLr~~~~~G~~~l~~mDE 146 (305)
.+.+-|+|||. |-+-++.+...|.+++||+|-
T Consensus 24 sllerlkpyytripfsekadlrlvkartdsgeyeiitvdg 63 (90)
T d2cx1a2 24 SLLERLKPYYTRIPFSEKADLRLVKARTDSGEYEIITVDG 63 (90)
T ss_dssp HHHHHHGGGSSSCCSCTTSCEEEEEEECSSCEEEEEEETT
T ss_pred HHHHHcccceeccCcccccceeeeEeecCCCceEEEEecC
Confidence 34556677753 555556666668899999873
Done!