RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2422
         (305 letters)



>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium
           lapideum [TaxId: 32060]}
          Length = 168

 Score = 29.1 bits (65), Expect = 0.42
 Identities = 20/116 (17%), Positives = 44/116 (37%), Gaps = 11/116 (9%)

Query: 97  KYVRALGAYYMRLTGSSVDCYKYLEPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREER 156
           K    LGA  +++   +V+   YLE LF    +L + N       +   + +        
Sbjct: 49  KMAVGLGAQ-VQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLL-------- 99

Query: 157 MCDVILPRIQKRHVLEENNEIEVK--VSILDDDIDDGGSSSSEDENEEAGEVYDKN 210
           +  V++P  +   ++  +   +++    I+D  +D GG   +          Y+  
Sbjct: 100 IGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQGGCVETLHPTSHTQPTYEVF 155


>d2grea1 b.49.3.1 (A:74-186) Deblocking aminopeptidase YhfE
           {Bacillus cereus [TaxId: 1396]}
          Length = 113

 Score = 28.3 bits (63), Expect = 0.45
 Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 160 VILPRIQKRHVLEENNEIEVKVSILDDDIDDGGSSSSEDENEEAG 204
            IL      HV ++  E +     ++  ID+     S DE  E G
Sbjct: 44  TILMHQTSVHVYKDAGEAKRDEKNIEVRIDER--VFSADEVRELG 86


>d1siga_ a.177.1.1 (A:) Sigma70 {Escherichia coli [TaxId: 562]}
          Length = 334

 Score = 27.6 bits (60), Expect = 2.0
 Identities = 24/142 (16%), Positives = 44/142 (30%), Gaps = 5/142 (3%)

Query: 168 RHVLEENNEIEVKVSILDDDIDDGGSSSSEDENEEAGEVYDKNRMDVDTYHSSKYDSHHR 227
            ++LE+ N +E + + L D I      ++E++               D       D    
Sbjct: 30  TYLLEQYNRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDG 89

Query: 228 DP-----DKERDRRYRSEKSTKERVRERSRSKERDRRHRSKSPRHKDRDYDRDRYKDYER 282
           D      D   D     EK  + R +          + RS +   ++     + +K +  
Sbjct: 90  DDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRL 149

Query: 283 EKYRSDRDRGDRRDRGDRDRRH 304
              + D      R   DR R  
Sbjct: 150 VPKQFDYLVNSMRVMMDRVRTQ 171


>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 318

 Score = 26.8 bits (58), Expect = 4.0
 Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 1/84 (1%)

Query: 14  GTNPQYLIEKIIRARI-YDSKYWKEECFALSAELLVDKAMELRYIGGVFGGNIKPTPFLC 72
           G   Q+ +  I +       + W         E L     + R +       ++    L 
Sbjct: 224 GNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALD 283

Query: 73  LILKMLQIQPEKDIVVEFIKNEEF 96
           LI K+L + P + I  +   N +F
Sbjct: 284 LIDKLLVLDPAQRIDSDDALNHDF 307


>d1jrob2 d.133.1.1 (B:124-777) Xanthine dehydrogenase chain B,
           C-terminal domain {Rhodobacter capsulatus [TaxId: 1061]}
          Length = 654

 Score = 26.4 bits (57), Expect = 5.3
 Identities = 10/66 (15%), Positives = 23/66 (34%)

Query: 55  RYIGGVFGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSV 114
           R +GG FGG       L +   +      +   + + ++++         + +R    + 
Sbjct: 99  RRMGGGFGGKESQGNHLAIACAVAARATGRPCKMRYDRDDDMVITGKRHDFRIRYRIGAD 158

Query: 115 DCYKYL 120
              K L
Sbjct: 159 ASGKLL 164


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.137    0.394 

Gapped
Lambda     K      H
   0.267   0.0461    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,194,343
Number of extensions: 59077
Number of successful extensions: 221
Number of sequences better than 10.0: 1
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 19
Length of query: 305
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 220
Effective length of database: 1,240,546
Effective search space: 272920120
Effective search space used: 272920120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.9 bits)