BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2425
(275 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NYS|B Chain B, Crystal Structure Of Activin A Bound To The Ecd Of Actriib
P41
pdb|1NYS|D Chain D, Crystal Structure Of Activin A Bound To The Ecd Of Actriib
P41
pdb|1NYU|B Chain B, Crystal Structure Of Activin A Bound To The Ecd Of Actriib
pdb|1NYU|D Chain D, Crystal Structure Of Activin A Bound To The Ecd Of Actriib
pdb|1S4Y|B Chain B, Crystal Structure Of The ActivinACTRIIB EXTRACELLULAR
DOMAIN
pdb|1S4Y|D Chain D, Crystal Structure Of The ActivinACTRIIB EXTRACELLULAR
DOMAIN
pdb|2B0U|A Chain A, The Structure Of The Follistatin:activin Complex
pdb|2B0U|B Chain B, The Structure Of The Follistatin:activin Complex
pdb|2ARP|A Chain A, Activin A In Complex With Fs12 Fragment Of Follistatin
pdb|2ARV|A Chain A, Structure Of Human Activin A
pdb|2ARV|B Chain B, Structure Of Human Activin A
pdb|2P6A|A Chain A, The Structure Of The Activin:follistatin 315 Complex
pdb|2P6A|B Chain B, The Structure Of The Activin:follistatin 315 Complex
pdb|3B4V|A Chain A, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|B Chain B, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|E Chain E, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|F Chain F, X-Ray Structure Of Activin In Complex With Fstl3
Length = 116
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 69/105 (65%), Gaps = 4/105 (3%)
Query: 174 CCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDC--GVRRTPDMYYNHYSHVIEEYRKMD 231
CCK++F+VSFK +GW DWIIAPSGY+ANYC G+C + T + +S VI YR
Sbjct: 11 CCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHIAGTSGSSLSFHSTVINHYRMRG 70
Query: 232 R--LSGLQPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGC 274
+ L+ CC P K PMS++Y+ NIIK+D+ M+V+ECGC
Sbjct: 71 HSPFANLKSCCVPTKLRPMSMLYYDDGQNIIKKDIQNMIVEECGC 115
>pdb|2QCW|A Chain A, Crystal Structure Of Bone Morphogenetic Protein-6 (Bmp-6)
pdb|2QCW|B Chain B, Crystal Structure Of Bone Morphogenetic Protein-6 (Bmp-6)
Length = 132
Score = 97.8 bits (242), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 63/108 (58%)
Query: 167 SATTKGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEE 226
S+ K C K + YVSF+ LGW+DWIIAP GY ANYC G+C M +++ V
Sbjct: 24 SSELKTACRKHELYVSFQDLGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHAIVQTL 83
Query: 227 YRKMDRLSGLQPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGC 274
M+ +PCCAP K + +S++YF +SN+I + MVV CGC
Sbjct: 84 VHLMNPEYVPKPCCAPTKLNAISVLYFDDNSNVILKKYRNMVVRACGC 131
>pdb|2R52|A Chain A, Crystal Structure Analysis Of Bone Morphogenetic Protein-6
(Bmp-6)
pdb|2R52|B Chain B, Crystal Structure Analysis Of Bone Morphogenetic Protein-6
(Bmp-6)
Length = 143
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 63/108 (58%)
Query: 167 SATTKGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEE 226
S+ K C K + YVSF+ LGW+DWIIAP GY ANYC G+C M +++ V
Sbjct: 35 SSELKTACRKHELYVSFQDLGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHAIVQTL 94
Query: 227 YRKMDRLSGLQPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGC 274
M+ +PCCAP K + +S++YF +SN+I + MVV CGC
Sbjct: 95 VHLMNPEYVPKPCCAPTKLNAISVLYFDDNSNVILKKYRNMVVRACGC 142
>pdb|2R53|A Chain A, Crystal Structure Analysis Of Bone Morphogenetic Protein-6
Variant B2 (b2-bmp-6)
pdb|2R53|B Chain B, Crystal Structure Analysis Of Bone Morphogenetic Protein-6
Variant B2 (b2-bmp-6)
Length = 116
Score = 94.7 bits (234), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 60/101 (59%)
Query: 174 CCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEEYRKMDRL 233
C K + YVSF+ LGW+DWIIAP GY ANYC G+C M +++ V M+
Sbjct: 15 CRKHELYVSFQDLGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHAIVQTLVHLMNPE 74
Query: 234 SGLQPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGC 274
+PCCAP K + +S++YF +SN+I + MVV CGC
Sbjct: 75 YVPKPCCAPTKLNAISVLYFDDNSNVILKKYRNMVVRACGC 115
>pdb|1M4U|L Chain L, Crystal Structure Of Bone Morphogenetic Protein-7 (bmp-7)
In Complex With The Secreted Antagonist Noggin
pdb|1LX5|A Chain A, Crystal Structure Of The Bmp7ACTRII EXTRACELLULAR DOMAIN
COMPLEX
pdb|1LXI|A Chain A, Refinement Of Bmp7 Crystal Structure
pdb|1BMP|A Chain A, Bone Morphogenetic Protein-7
Length = 139
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 66/117 (56%)
Query: 158 RVKRRALDCSATTKGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYY 217
R+ A + S+ + C K + YVSF+ LGW+DWIIAP GY A YC G+C M
Sbjct: 22 RMANVAENSSSDQRQACKKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMNA 81
Query: 218 NHYSHVIEEYRKMDRLSGLQPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGC 274
+++ V ++ + +PCCAP + + +S++YF SN+I + MVV CGC
Sbjct: 82 TNHAIVQTLVHFINPETVPKPCCAPTQLNAISVLYFDDSSNVILKKYRNMVVRACGC 138
>pdb|3HH2|A Chain A, Crystal Structure Of The Myostatin:follistatin 288 Complex
pdb|3HH2|B Chain B, Crystal Structure Of The Myostatin:follistatin 288 Complex
pdb|3SEK|B Chain B, Crystal Structure Of The Myostatin:follistatin-Like 3
Complex
Length = 109
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 61/113 (53%), Gaps = 8/113 (7%)
Query: 163 ALDCSA-TTKGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNHYS 221
LDC +T+ +CC+ V F+ GW DWIIAP Y ANYC G+C ++ Y
Sbjct: 3 GLDCDEHSTESRCCRYPLTVDFEAFGW-DWIIAPKRYKANYCSGECEF-----VFLQKYP 56
Query: 222 HVIEEYRKMDRLSGLQPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGC 274
H ++ R S PCC P K SP++++YF II +P MVVD CGC
Sbjct: 57 HTHLVHQANPRGSA-GPCCTPTKMSPINMLYFNGKEQIIYGKIPAMVVDRCGC 108
>pdb|2BHK|A Chain A, Crystal Structure Of Human Growth And Differentiation
Factor 5 (Gdf5)
Length = 120
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Query: 153 PTVTRRVKRRALDCSATTKGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRT 212
P TR+ KR S K +C ++ +V+FK +GW+DWIIAP Y A +C G C
Sbjct: 2 PLATRQGKRP----SKNLKARCSRKALHVNFKDMGWDDWIIAPLEYEAFHCEGLCEFPLR 57
Query: 213 PDMYYNHYSHVIEEYRKMDRLSGLQPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDEC 272
+ +++ + MD S CC P + SP+S+++ +N++ + MVV+ C
Sbjct: 58 SHLEPTNHAVIQTLMNSMDPESTPPTCCVPTRLSPISILFIDSANNVVYKQYEDMVVESC 117
Query: 273 GC 274
GC
Sbjct: 118 GC 119
>pdb|3QB4|A Chain A, Crystal Structure Of A Tgf-Beta Ligand-Receptor Complex
pdb|3QB4|C Chain C, Crystal Structure Of A Tgf-Beta Ligand-Receptor Complex
Length = 117
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 62/116 (53%)
Query: 159 VKRRALDCSATTKGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYN 218
+KR+ S K +C ++ +V+FK +GW+DWIIAP Y A +C G C +
Sbjct: 1 MKRQGKRPSKNLKARCSRKALHVNFKDMGWDDWIIAPLEYEAFHCEGLCEFPLASHLEPT 60
Query: 219 HYSHVIEEYRKMDRLSGLQPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGC 274
+++ + MD S CC P + SP+S+++ +N++ + MVV+ CGC
Sbjct: 61 NHAVIQTLMNSMDPESTPPTCCVPTRLSPISILFIDSANNVVYKQYEDMVVESCGC 116
>pdb|1WAQ|A Chain A, Crystal Structure Of Human Growth And Differentiation
Factor 5 (Gdf-5)
pdb|3EVS|B Chain B, Crystal Structure Of The Gdf-5:bmp Receptor Ib Complex
Length = 117
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 62/116 (53%)
Query: 159 VKRRALDCSATTKGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYN 218
+KR+ S K +C ++ +V+FK +GW+DWIIAP Y A +C G C +
Sbjct: 1 MKRQGKRPSKNLKARCSRKALHVNFKDMGWDDWIIAPLEYEAFHCEGLCEFPLRSHLEPT 60
Query: 219 HYSHVIEEYRKMDRLSGLQPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGC 274
+++ + MD S CC P + SP+S+++ +N++ + MVV+ CGC
Sbjct: 61 NHAVIQTLMNSMDPESTPPTCCVPTRLSPISILFIDSANNVVYKQYEDMVVESCGC 116
>pdb|3RJR|A Chain A, Crystal Structure Of Pro-tgf Beta 1
pdb|3RJR|B Chain B, Crystal Structure Of Pro-tgf Beta 1
pdb|3RJR|C Chain C, Crystal Structure Of Pro-tgf Beta 1
pdb|3RJR|D Chain D, Crystal Structure Of Pro-tgf Beta 1
Length = 363
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 24/200 (12%)
Query: 94 WNKFDLTSTVQDWYS--SGLQD-RLRLLVDCSGCGDLIHPVL--FQQTQKAEDSW----- 143
W FD+T V+ W + ++ RL C + +H + F ++ + +
Sbjct: 168 WLSFDVTGVVRQWLTRREAIEGFRLSAHCSCDSKDNTLHVEINGFNSGRRGDLATIHGMN 227
Query: 144 RPFLVVYTDPT-----VTRRVKRRALD---CSATTKGQCCKQKFYVSF-KQLGWEDWIIA 194
RPFL++ P + RRALD C ++T+ CC ++ Y+ F K LGW+ WI
Sbjct: 228 RPFLLLMATPLERAQHLHSSRHRRALDTNYCFSSTEKNCCVRQLYIDFRKDLGWK-WIHE 286
Query: 195 PSGYYANYCRGDCGVRRTPDMYYNHYSHVIEEYRKMDRLSGLQPCCAPVKFSPMSLIYFG 254
P GY+AN+C G C + D YS V+ Y + + + PCC P P+ ++Y+
Sbjct: 287 PKGYHANFCLGPCPYIWSLD---TQYSKVLALYNQHNPGASAAPCCVPQALEPLPIVYYV 343
Query: 255 PDSNIIKRDLPKMVVDECGC 274
+++ L M+V C C
Sbjct: 344 GRKPKVEQ-LSNMIVRSCKC 362
>pdb|2H64|A Chain A, Crystal Structure Of A Ternary Ligand-Receptor Complex Of
Bmp-2
Length = 114
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Query: 171 KGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEEYRKM 230
K C + YV F +GW DWI+AP GY+A YC G+C + N +H I +
Sbjct: 11 KSSCKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHL--NSTNHAIVQTLVN 68
Query: 231 DRLSGL-QPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGC 274
S + + CC P + S +S++Y + ++K+D MVV+ CGC
Sbjct: 69 SVNSKIPKACCVPTELSAISMLYLDENEKVVKKDYQDMVVEGCGC 113
>pdb|3BMP|A Chain A, Human Bone Morphogenetic Protein-2 (Bmp-2)
pdb|1REW|A Chain A, Structural Refinement Of The Complex Of Bone Morphogenetic
Protein 2 And Its Type Ia Receptor
pdb|1REW|B Chain B, Structural Refinement Of The Complex Of Bone Morphogenetic
Protein 2 And Its Type Ia Receptor
pdb|2GOO|A Chain A, Ternary Complex Of Bmp-2 Bound To Bmpr-Ia-Ecd And
Actrii-Ecd
pdb|2GOO|D Chain D, Ternary Complex Of Bmp-2 Bound To Bmpr-Ia-Ecd And
Actrii-Ecd
pdb|2H62|A Chain A, Crystal Structure Of A Ternary Ligand-Receptor Complex Of
Bmp-2
pdb|2H62|B Chain B, Crystal Structure Of A Ternary Ligand-Receptor Complex Of
Bmp-2
Length = 114
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 171 KGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEEYRKM 230
K C + YV F +GW DWI+AP GY+A YC G+C + N +H I +
Sbjct: 11 KSSCKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHL--NSTNHAIVQTLVN 68
Query: 231 DRLSGL-QPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGC 274
S + + CC P + S +S++Y + ++ ++ MVV+ CGC
Sbjct: 69 SVNSKIPKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCGC 113
>pdb|1ES7|A Chain A, Complex Between Bmp-2 And Two Bmp Receptor Ia Ectodomains
pdb|1ES7|C Chain C, Complex Between Bmp-2 And Two Bmp Receptor Ia Ectodomains
pdb|2QJ9|B Chain B, Crystal Structure Analysis Of Bmp-2 In Complex With
Bmpr-Ia Variant B1
pdb|2QJ9|A Chain A, Crystal Structure Analysis Of Bmp-2 In Complex With
Bmpr-Ia Variant B1
pdb|2QJA|A Chain A, Crystal Structure Analysis Of Bmp-2 In Complex With
Bmpr-ia Variant B12
pdb|2QJA|B Chain B, Crystal Structure Analysis Of Bmp-2 In Complex With
Bmpr-ia Variant B12
pdb|2QJB|A Chain A, Crystal Structure Analysis Of Bmp-2 In Complex With
Bmpr-ia Variant Ia/ib
pdb|2QJB|B Chain B, Crystal Structure Analysis Of Bmp-2 In Complex With
Bmpr-ia Variant Ia/ib
Length = 116
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 171 KGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEEYRKM 230
K C + YV F +GW DWI+AP GY+A YC G+C + N +H I +
Sbjct: 13 KSSCKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHL--NSTNHAIVQTLVN 70
Query: 231 DRLSGL-QPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGC 274
S + + CC P + S +S++Y + ++ ++ MVV+ CGC
Sbjct: 71 SVNSKIPKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCGC 115
>pdb|1REU|A Chain A, Structure Of The Bone Morphogenetic Protein 2 Mutant L51p
Length = 103
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 172 GQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEEYRKMD 231
C + YV F +GW DWI+AP GY+A YC G+C P + N +H I +
Sbjct: 1 SSCKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPF--PPADHLNSTNHAIVQTLVNS 58
Query: 232 RLSGL-QPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGC 274
S + + CC P + S +S++Y + ++ ++ MVV+ CGC
Sbjct: 59 VNSKIPKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCGC 102
>pdb|3BK3|A Chain A, Crystal Structure Of The Complex Of Bmp-2 And The First
Von Willebrand Domain Type C Of Crossveinless-2
pdb|3BK3|B Chain B, Crystal Structure Of The Complex Of Bmp-2 And The First
Von Willebrand Domain Type C Of Crossveinless-2
Length = 114
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 171 KGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEEYRKM 230
K C + YV F +GW DWI+AP GY+A YC G+C + N +H I +
Sbjct: 11 KSSCKRHPLYVDFSDVGWNDWIVAPPGYHAMYCHGECPFPLAD--HLNSTNHAIVQTLVN 68
Query: 231 DRLSGL-QPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGC 274
S + + CC P + S +S++ + ++ ++ MVV+ CGC
Sbjct: 69 SVNSKIPKACCVPTELSAISMLMLDENEKVVLKNYQDMVVEGCGC 113
>pdb|2QCQ|A Chain A, Crystal Structure Of Bone Morphogenetic Protein-3 (Bmp-3)
pdb|2QCQ|B Chain B, Crystal Structure Of Bone Morphogenetic Protein-3 (Bmp-3)
Length = 110
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 173 QCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEEYRKMDR 232
C ++ V F +GW +WII+P + A YC G C + ++++ + R +
Sbjct: 7 NCARRYLKVDFADIGWSEWIISPKSFDAYYCSGACQFPMPKSLKPSNHATIQSIVRAVGV 66
Query: 233 LSGL-QPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGC 274
+ G+ +PCC P K S +S+++F + N++ + P M V+ C C
Sbjct: 67 VPGIPEPCCVPEKMSSLSILFFDENKNVVLKVYPNMTVESCAC 109
>pdb|1KTZ|A Chain A, Crystal Structure Of The Human Tgf-Beta Type Ii Receptor
Extracellular Domain In Complex With Tgf-Beta3
pdb|1TGJ|A Chain A, Human Transforming Growth Factor-beta 3, Crystallized From
Dioxane
pdb|1TGK|A Chain A, Human Transforming Growth Factor Beta 3, Crystallized From
Peg 4000
pdb|2PJY|A Chain A, Structural Basis For Cooperative Assembly Of The Tgf-Beta
Signaling Complex
pdb|3EO1|C Chain C, Structure Of The Fab Fragment Of Gc-1008 In Complex With
Transforming Growth Factor-Beta 3
pdb|3EO1|F Chain F, Structure Of The Fab Fragment Of Gc-1008 In Complex With
Transforming Growth Factor-Beta 3
pdb|3EO1|I Chain I, Structure Of The Fab Fragment Of Gc-1008 In Complex With
Transforming Growth Factor-Beta 3
pdb|3EO1|L Chain L, Structure Of The Fab Fragment Of Gc-1008 In Complex With
Transforming Growth Factor-Beta 3
Length = 112
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 9/116 (7%)
Query: 163 ALD---CSATTKGQCCKQKFYVSFKQ-LGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYN 218
ALD C + CC + Y+ F+Q LGW+ W+ P GYYAN+C G C R+ D
Sbjct: 1 ALDTNYCFRNLEENCCVRPLYIDFRQDLGWK-WVHEPKGYYANFCSGPCPYLRSAD---T 56
Query: 219 HYSHVIEEYRKMDRLSGLQPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGC 274
+S V+ Y ++ + PCC P P++++Y+ + +++ L MVV C C
Sbjct: 57 THSTVLGLYNTLNPEASASPCCVPQDLEPLTILYYVGRTPKVEQ-LSNMVVKSCKC 111
>pdb|1KLD|A Chain A, Solution Structure Of Tgf-B1, Nmr, Models 18-33 Of 33
Structures
pdb|1KLD|B Chain B, Solution Structure Of Tgf-B1, Nmr, Models 18-33 Of 33
Structures
pdb|1KLC|A Chain A, Solution Structure Of Tgf-B1, Nmr, Minimized Average
Structure
pdb|1KLC|B Chain B, Solution Structure Of Tgf-B1, Nmr, Minimized Average
Structure
pdb|1KLA|A Chain A, Solution Structure Of Tgf-B1, Nmr, Models 1-17 Of 33
Structures
pdb|1KLA|B Chain B, Solution Structure Of Tgf-B1, Nmr, Models 1-17 Of 33
Structures
pdb|3KFD|A Chain A, Ternary Complex Of Tgf-B1 Reveals Isoform-Specific Ligand
Re And Receptor Recruitment In The Superfamily
pdb|3KFD|B Chain B, Ternary Complex Of Tgf-B1 Reveals Isoform-Specific Ligand
Re And Receptor Recruitment In The Superfamily
pdb|3KFD|C Chain C, Ternary Complex Of Tgf-B1 Reveals Isoform-Specific Ligand
Re And Receptor Recruitment In The Superfamily
pdb|3KFD|D Chain D, Ternary Complex Of Tgf-B1 Reveals Isoform-Specific Ligand
Re And Receptor Recruitment In The Superfamily
Length = 112
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 9/116 (7%)
Query: 163 ALD---CSATTKGQCCKQKFYVSF-KQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYN 218
ALD C ++T+ CC ++ Y+ F K LGW+ WI P GY+AN+C G C + D
Sbjct: 1 ALDTNYCFSSTEKNCCVRQLYIDFRKDLGWK-WIHEPKGYHANFCLGPCPYIWSLD---T 56
Query: 219 HYSHVIEEYRKMDRLSGLQPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGC 274
YS V+ Y + + + PCC P P+ ++Y+ +++ L M+V C C
Sbjct: 57 QYSKVLALYNQHNPGASAAPCCVPQALEPLPIVYYVGRKPKVEQ-LSNMIVRSCKC 111
>pdb|1TFG|A Chain A, An Unusual Feature Revealed By The Crystal Structure At
2.2 Angstroms Resolution Of Human Transforming Growth
Factor-Beta2
pdb|2TGI|A Chain A, Crystal Structure Of Transforming Growth Factor-Beta2: An
Unusual Fold For The Superfamily
Length = 112
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 163 ALD---CSATTKGQCCKQKFYVSFKQ-LGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYN 218
ALD C + CC + Y+ FK+ LGW+ WI P GY AN+C G C + D
Sbjct: 1 ALDAAYCFRNVQDNCCLRPLYIDFKRDLGWK-WIHEPKGYNANFCAGACPYLWSSD---T 56
Query: 219 HYSHVIEEYRKMDRLSGLQPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGC 274
+S V+ Y ++ + PCC P++++Y+ + I++ L M+V C C
Sbjct: 57 QHSRVLSLYNTINPEASASPCCVSQDLEPLTILYYIGKTPKIEQ-LSNMIVKSCKC 111
>pdb|1ZKZ|A Chain A, Crystal Structure Of Bmp9
pdb|4FAO|A Chain A, Specificity And Structure Of A High Affinity Activin-Like
1 (Alk1) Signaling Complex
pdb|4FAO|B Chain B, Specificity And Structure Of A High Affinity Activin-Like
1 (Alk1) Signaling Complex
pdb|4FAO|G Chain G, Specificity And Structure Of A High Affinity Activin-Like
1 (Alk1) Signaling Complex
pdb|4FAO|H Chain H, Specificity And Structure Of A High Affinity Activin-Like
1 (Alk1) Signaling Complex
pdb|4FAO|M Chain M, Specificity And Structure Of A High Affinity Activin-Like
1 (Alk1) Signaling Complex
pdb|4FAO|N Chain N, Specificity And Structure Of A High Affinity Activin-Like
1 (Alk1) Signaling Complex
pdb|4FAO|S Chain S, Specificity And Structure Of A High Affinity Activin-Like
1 (Alk1) Signaling Complex
pdb|4FAO|T Chain T, Specificity And Structure Of A High Affinity Activin-Like
1 (Alk1) Signaling Complex
pdb|4FAO|AA Chain a, Specificity And Structure Of A High Affinity Activin-Like
1 (Alk1) Signaling Complex
pdb|4FAO|BB Chain b, Specificity And Structure Of A High Affinity Activin-Like
1 (Alk1) Signaling Complex
pdb|4FAO|GG Chain g, Specificity And Structure Of A High Affinity Activin-Like
1 (Alk1) Signaling Complex
pdb|4FAO|HH Chain h, Specificity And Structure Of A High Affinity Activin-Like
1 (Alk1) Signaling Complex
Length = 110
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Query: 167 SATTKGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEE 226
SA C K V+F+ +GW+ WIIAP Y A C+G C D+ ++ V
Sbjct: 1 SAGAGSHCQKTSLRVNFEDIGWDSWIIAPKEYEAYECKGGCFFPLADDVTPTKHAIVQTL 60
Query: 227 YRKMDRLSGLQPCCAPVKFSPMSLIYFGPDSNI--IKRDLPKMVVDECGC 274
+ CC P K SP+S++Y D + +K M V ECGC
Sbjct: 61 VHLKFPTKVGKACCVPTKLSPISVLY-KDDMGVPTLKYHYEGMSVAECGC 109
>pdb|2HDI|A Chain A, Crystal Structure Of The Colicin I Receptor Cir From
E.Coli In Complex With Receptor Binding Domain Of
Colicin Ia
Length = 639
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 181 VSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMY 216
+ +K L EDW + SG+Y R D +TP Y
Sbjct: 553 LDWKPLALEDWSMYMSGHYTGQKRADSATAKTPGGY 588
>pdb|2HDF|A Chain A, Crystal Structure Of The Colicin I Receptor Cir From
E.Coli
Length = 639
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 181 VSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMY 216
+ +K L EDW SG+Y R D +TP Y
Sbjct: 553 LDWKPLALEDWSXYXSGHYTGQKRADSATAKTPGGY 588
>pdb|2L6X|A Chain A, Solution Nmr Structure Of Proteorhodopsin
Length = 243
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 191 WIIAPSGYYANYCRGDCGVRRTPDMYYN 218
W I P GY+ Y GD G ++ YN
Sbjct: 180 WAIYPVGYFTGYLMGDGGSALNLNLIYN 207
>pdb|1WVR|A Chain A, Crystal Structure Of A Crisp Family Ca-Channel Blocker
Derived From Snake Venom
Length = 221
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 50/136 (36%), Gaps = 8/136 (5%)
Query: 143 WRPFLVVYTDPTVTRRVKRRALDCSATTKGQCCKQKFYVSFKQLGWEDWIIAPSGYYANY 202
W P + R ++ + S G C + Y++ W D I A G Y ++
Sbjct: 41 WYPEAAANAERWAYRCIESHSSRDSRVIGGIKCGENIYMATYPAKWTDIIHAWHGEYKDF 100
Query: 203 CRGDCGVRRTP-DMYYNHYSHVIEEYRKMDRLSGLQPCCAPVKFSPMSLIYFGPDSNII- 260
GV P D HY+ ++ + K R C K+S + + P NII
Sbjct: 101 ---KYGVGAVPSDAVIGHYTQIV--WYKSYRAGCAAAYCPSSKYSYFYVCQYCPAGNIIG 155
Query: 261 KRDLPKMVVDECG-CP 275
K P CG CP
Sbjct: 156 KTATPYKSGPPCGDCP 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,452,907
Number of Sequences: 62578
Number of extensions: 332579
Number of successful extensions: 475
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 428
Number of HSP's gapped (non-prelim): 29
length of query: 275
length of database: 14,973,337
effective HSP length: 97
effective length of query: 178
effective length of database: 8,903,271
effective search space: 1584782238
effective search space used: 1584782238
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)