Query psy2425
Match_columns 275
No_of_seqs 216 out of 1008
Neff 7.7
Searched_HMMs 46136
Date Sat Aug 17 00:37:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2425.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2425hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3900|consensus 100.0 5.2E-48 1.1E-52 365.1 17.9 249 6-275 129-413 (413)
2 smart00204 TGFB Transforming g 100.0 2.4E-40 5.2E-45 254.1 9.8 100 174-275 1-102 (102)
3 PHA02913 TGF-beta-like protein 100.0 6.6E-37 1.4E-41 250.5 10.1 107 157-274 64-172 (172)
4 PF00019 TGF_beta: Transformin 100.0 2.4E-36 5.2E-41 233.7 6.7 102 172-275 2-105 (105)
5 PF00688 TGFb_propeptide: TGF- 99.6 1.4E-15 3.1E-20 132.7 9.6 129 3-150 102-238 (238)
6 PF06848 Disaggr_repeat: Disag 97.6 0.0014 3E-08 54.3 12.1 129 5-147 31-180 (182)
7 smart00041 CT C-terminal cysti 96.9 0.0022 4.7E-08 47.1 5.1 63 196-275 16-78 (82)
8 PF03045 DAN: DAN domain; Int 94.1 0.16 3.4E-06 40.1 5.9 88 172-275 28-117 (121)
9 PF00007 Cys_knot: Cystine-kno 89.6 0.63 1.4E-05 35.5 4.4 84 173-275 3-86 (105)
10 PF05463 Sclerostin: Sclerosti 73.2 6.4 0.00014 33.3 4.5 91 172-275 65-156 (198)
11 cd00135 PDGF Platelet-derived 69.7 7.4 0.00016 28.7 3.7 55 173-253 2-58 (86)
12 smart00141 PDGF Platelet-deriv 65.1 14 0.0003 27.1 4.4 55 173-253 2-58 (83)
13 PF02512 UK: Virulence determi 63.1 5 0.00011 29.0 1.6 16 234-249 62-77 (96)
14 PF10330 Stb3: Putative Sin3 b 53.1 7.9 0.00017 28.8 1.3 18 180-197 61-78 (92)
15 PF00341 PDGF: PDGF/VEGF domai 31.7 87 0.0019 22.5 4.0 55 174-254 1-57 (82)
16 KOG4457|consensus 31.4 41 0.00089 28.1 2.4 28 244-271 146-173 (202)
17 PF10430 Ig_Tie2_1: Tie-2 Ig-l 28.5 20 0.00043 26.6 0.1 19 191-209 68-86 (96)
18 PRK03760 hypothetical protein; 23.8 63 0.0014 25.2 2.1 16 246-261 59-74 (117)
19 PHA02661 vascular endothelial 21.4 4.1E+02 0.0089 21.6 6.5 56 172-253 46-103 (146)
20 COG1430 Uncharacterized conser 21.1 80 0.0017 25.0 2.3 16 246-261 62-77 (126)
No 1
>KOG3900|consensus
Probab=100.00 E-value=5.2e-48 Score=365.08 Aligned_cols=249 Identities=28% Similarity=0.558 Sum_probs=165.9
Q ss_pred EEEEEeCCCCCCCCcceEEEEEEeEEEEecCCCCCCCCcccccCcceEE-EEEEEEeecCCceeeeccccccccccceee
Q psy2425 6 QLLEFPRPKEMDGTELKVKSAVLWVRIEFRSGFPHTLRPIYQKSDRNVT-LWVFRVSAQSNATYVSGKEFDEQTEMSASL 84 (275)
Q Consensus 6 ~~L~F~~s~~~~~~~~~V~~A~L~ly~~~~~~~~~~~~~~~~~~~~~v~-I~vy~~~~~~~~~~l~~~~~~~~~~~i~s~ 84 (275)
..+.|++++. + ....+..|+|++|+.+........ ..+.+.. |.+|++.... .. ......+++++
T Consensus 129 ~~~~~~~~~~-~-~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~ 194 (413)
T KOG3900|consen 129 GDLLFDLRSI-P-SWEALPAAELRLYRRPVPDKLISA-----EANESLEELSPYDVLSSP----LG---RANDARLLSSR 194 (413)
T ss_pred hhhhcccccc-c-chhhccccceeeeccccccccccc-----ccCcceeEEEeeeecccc----cc---CCCceeecccc
Confidence 3456665545 5 577888899999998654321111 1122233 8888875321 00 11233456677
Q ss_pred eEecCCCCceEEEECcHHHHHHHHcCCCCceEEEEEEcCCCCcccc------ceecccccccCCCCcEEE----------
Q psy2425 85 TVSLSSSLGWNKFDLTSTVQDWYSSGLQDRLRLLVDCSGCGDLIHP------VLFQQTQKAEDSWRPFLV---------- 148 (275)
Q Consensus 85 ~v~~~s~sgW~~fdVT~~v~~Wl~~~~~~~l~l~v~~~~~~~~~~~------~~~~~~~~~~~~~~P~L~---------- 148 (275)
.+... .+||++||||.+++.|+..+ ..++++.+.+......... ...... ......++++.
T Consensus 195 ~~~~~-~~~W~~fdvt~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 271 (413)
T KOG3900|consen 195 LVALR-LSGWIQFDVTSLVKRWALLS-LSNLGLELQAEVVDRPLDPLLELSHLLLGRA-GTPGALQLLLSAKPPASEKDP 271 (413)
T ss_pred ceecC-CCccEEeeHHHHHHHHHhcc-cccCceeEEEEeccccccccccccceeeeec-CCccccchhhhhccccccccc
Confidence 77777 77799999999999999866 4566666665432211111 110000 00111111111
Q ss_pred ---EEeCCC----------cccccccccC----CCCCCCCCCeeeeeEEEEeccCCceeeeecCCceecceeecccCCCC
Q psy2425 149 ---VYTDPT----------VTRRVKRRAL----DCSATTKGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRR 211 (275)
Q Consensus 149 ---~~~~~~----------~~~r~rR~~~----~c~~~~~~~Ccr~~~~V~F~~lgw~~wIi~P~~~~a~~C~G~C~~~~ 211 (275)
...... ..++++++.. .|... ++.|||++|||||++|||+||||||+||+||||+|.|+++.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Ccr~~lyV~F~~lGW~dWIIaP~gy~A~yC~G~C~~p~ 350 (413)
T KOG3900|consen 272 DLELSTLPSRRRELRLRPRQRHDRRRRRARRGRNCEGA-RNRCCRRPLYVDFRDLGWDDWIIAPKGYDANYCSGTCPFPL 350 (413)
T ss_pred cccccccccccccccccccccccchhccccccccCCCC-CCceeccceEeehhhcCCcceEeCCCcccCceecCcCCCch
Confidence 111000 0001111111 23322 36899999999999999999999999999999999999987
Q ss_pred CCCCCCCcchHHHHH--HHhcCCCCCCCCeeeeeeccceeEEEEcCCCcEEEEEcCCeEEecccCC
Q psy2425 212 TPDMYYNHYSHVIEE--YRKMDRLSGLQPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGCP 275 (275)
Q Consensus 212 ~~~~~~~~~~h~~~~--~~~~~~~~~~~~CC~P~~~~~l~~ly~~~~~~i~~~~~~~m~v~~CgC~ 275 (275)
.. +++++|++.| ++.+++..+++||||||+|+||+|||+|++++|++++|+||+|++|||+
T Consensus 351 ~~---~~~tnHa~vq~l~~~~~p~~~p~pCCvPtklsplsvLy~d~~~~vv~k~y~nMvV~~CgC~ 413 (413)
T KOG3900|consen 351 AD---HAATNHAIVQTLVHAVNPEPVPKPCCVPTKLSPLSVLYFDDNGNVVLKTYPNMVVESCGCR 413 (413)
T ss_pred hh---cCCcchHHHHHHHHhhCCCCCCCCccccCccCceEEEEEeCCCcEEEEEecCcEEEecccC
Confidence 53 6788898877 7888888899999999999999999999999999999999999999996
No 2
>smart00204 TGFB Transforming growth factor-beta (TGF-beta) family. Family members are active as disulphide-linked homo- or heterodimers. TGFB is a multifunctional peptide that controls proliferation, differentiation, and other functions in many cell types.
Probab=100.00 E-value=2.4e-40 Score=254.08 Aligned_cols=100 Identities=44% Similarity=1.037 Sum_probs=89.5
Q ss_pred eeeeeEEEEeccCCceeeeecCCceecceeecccCCCCCCCCCCCcchHHHHH--HHhcCCCCCCCCeeeeeeccceeEE
Q psy2425 174 CCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEE--YRKMDRLSGLQPCCAPVKFSPMSLI 251 (275)
Q Consensus 174 Ccr~~~~V~F~~lgw~~wIi~P~~~~a~~C~G~C~~~~~~~~~~~~~~h~~~~--~~~~~~~~~~~~CC~P~~~~~l~~l 251 (275)
|||++|||||+||||++|||||++|+||||.|.|+.+..+. ++.++|++.+ ++..++...++|||+|++|++|+||
T Consensus 1 Ccr~~l~VdF~~iGW~~wIiaP~~y~a~yC~G~C~~~~~~~--~~~~~Ha~i~~~~~~~~~~~~~~pCC~P~~~~~l~~l 78 (102)
T smart00204 1 CRRRQLYVDFKDLGWDDWIIAPKGYNAYYCEGECPFPLSTS--LNATNHAIVQTLVHLLGPNPVPKPCCVPTKLSPLSML 78 (102)
T ss_pred CceeEEEEEHhhcCCcceEEcCCceeeeEEeeeCCCCcccc--cCCcchhhhhhhHHhcCCCCCCCCCccCceEecEEEE
Confidence 99999999999999999999999999999999999876543 4556787765 5555666688999999999999999
Q ss_pred EEcCCCcEEEEEcCCeEEecccCC
Q psy2425 252 YFGPDSNIIKRDLPKMVVDECGCP 275 (275)
Q Consensus 252 y~~~~~~i~~~~~~~m~v~~CgC~ 275 (275)
|+|++|+++++++|||+|++|||+
T Consensus 79 y~~~~~~i~~~~~~~Mvv~~CgC~ 102 (102)
T smart00204 79 YYDDDGNVVLRNYPNMVVEECGCR 102 (102)
T ss_pred EEeCCCcEEEEEcCCCEEeeeeeC
Confidence 999999999999999999999996
No 3
>PHA02913 TGF-beta-like protein; Provisional
Probab=100.00 E-value=6.6e-37 Score=250.54 Aligned_cols=107 Identities=25% Similarity=0.587 Sum_probs=83.5
Q ss_pred cccccccCCCCCCCCCCeeeeeEEEEe-ccCCceeeeecCCceecceeecccCCCCCCCCCCCcchHHHHH-HHhcCCCC
Q psy2425 157 RRVKRRALDCSATTKGQCCKQKFYVSF-KQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEE-YRKMDRLS 234 (275)
Q Consensus 157 ~r~rR~~~~c~~~~~~~Ccr~~~~V~F-~~lgw~~wIi~P~~~~a~~C~G~C~~~~~~~~~~~~~~h~~~~-~~~~~~~~ 234 (275)
.|+||...+ .++.|||++||||| +|||| +|||||+||+||||.|+|+++..+ ..+|+..+ +....|..
T Consensus 64 ~R~kr~~~~----~~~~CcR~~lyVDF~~dIGW-dWIIAPkgY~AyyC~G~Cp~p~~~-----~~~~~~~~ll~~~~p~~ 133 (172)
T PHA02913 64 PRHKMDFCD----IDAICCIRDFNIDFKADMGM-KWILKPEGTHANLCIGICSISNHK-----KINLMYGTAFKHHMPDN 133 (172)
T ss_pred ccccccCCC----CCCCceeEEEEechhhccCc-ceEecCCCeeeeEEeeeCCCCcch-----hhHHHHHHHHHhcCCCC
Confidence 345554432 34789999999999 99999 599999999999999999875321 11222111 23334666
Q ss_pred CCCCeeeeeeccceeEEEEcCCCcEEEEEcCCeEEecccC
Q psy2425 235 GLQPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGC 274 (275)
Q Consensus 235 ~~~~CC~P~~~~~l~~ly~~~~~~i~~~~~~~m~v~~CgC 274 (275)
.++|||+|++|+||+|||+|+ ++++++++|||+|++|||
T Consensus 134 ~~~pCCvPtklspLSmLY~d~-~nV~~k~~~nMvVeeCGC 172 (172)
T PHA02913 134 TIPFCCAPIKMKNFIIAYKEG-RKIKTDNIKNFKILECAC 172 (172)
T ss_pred CCCCCccccccccEEEEEECC-CEEEEeECCCcEEecccC
Confidence 788999999999999999985 589999999999999999
No 4
>PF00019 TGF_beta: Transforming growth factor beta like domain; InterPro: IPR001839 Transforming growth factor-beta (TGF-beta) is a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types. TGF-beta-1 is a peptide of 112 amino acid residues derived by proteolytic cleavage from the C-terminal of a precursor protein []. A number of proteins are known to be related to TGF-beta-1 [, ]. Proteins from the TGF-beta family are only active as homo- or heterodimer; the two chains being linked by a single disulphide bond. From X-ray studies of TGF-beta-2 [], it is known that all the other cysteines are involved in intrachain disulphide bonds. There are four disulphide bonds in the TGF-beta's and in inhibin beta chains, while the other members of this family lack the first bond. The regulatory cytokine TGFbeta exerts tumour-suppressive effects, but also modulates cell invasion and immune regulation []. Misregulation of the TGF-beta signalling pathway can result in tumour development. ; GO: 0008083 growth factor activity; PDB: 2QCQ_B 2QCW_B 2R53_A 2R52_A 1M4U_L 1BMP_A 1LX5_A 1LXI_A 3FUB_B 2V5E_B ....
Probab=100.00 E-value=2.4e-36 Score=233.69 Aligned_cols=102 Identities=48% Similarity=1.107 Sum_probs=88.2
Q ss_pred CCeeeeeEEEEeccCCceeeeecCCceecceeecccCCCCCCCCCCCcchHHHHH--HHhcCCCCCCCCeeeeeecccee
Q psy2425 172 GQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEE--YRKMDRLSGLQPCCAPVKFSPMS 249 (275)
Q Consensus 172 ~~Ccr~~~~V~F~~lgw~~wIi~P~~~~a~~C~G~C~~~~~~~~~~~~~~h~~~~--~~~~~~~~~~~~CC~P~~~~~l~ 249 (275)
+.||+++++|||+||||++|||+|++|+|+||.|.|+.+.... .+.++|++.+ ++..++...++|||+|++|++|+
T Consensus 2 ~~Cc~~~~~v~F~~lGw~~wIi~P~~~~~~~C~G~C~~~~~~~--~~~~~ha~~~~~~~~~~~~~~~~pCC~P~~~~~l~ 79 (105)
T PF00019_consen 2 KRCCRRSLYVNFKDLGWDDWIIAPEGYNANYCSGSCPFPLSNH--NNHSNHAILQSLMHSLNPRSVPQPCCVPTKYSPLS 79 (105)
T ss_dssp SBSEEEEEEEECTCTTSTTTEEESSEEEEEEEESBSCSSSSCG--CHHHHHHHHHHHHHHHSTTTSTS-EEEEEEEEEEE
T ss_pred CcceeEEEEEEhhhcCCceeEeccCccccccccceeccccccc--ccccccccccccccccccccccCCcEeeeeeceEE
Confidence 5799999999999999999999999999999999999876532 3344666654 44456667899999999999999
Q ss_pred EEEEcCCCcEEEEEcCCeEEecccCC
Q psy2425 250 LIYFGPDSNIIKRDLPKMVVDECGCP 275 (275)
Q Consensus 250 ~ly~~~~~~i~~~~~~~m~v~~CgC~ 275 (275)
|||+|+++.|++++|+||+|++|||+
T Consensus 80 il~~~~~~~i~~~~~~~m~v~~CgC~ 105 (105)
T PF00019_consen 80 ILYLDEDGNIVLKTLPNMIVKECGCS 105 (105)
T ss_dssp EEEEETTSEEEEEEEEEEEEEEEEEE
T ss_pred EEEEECCCcEEEEEeCCEEecccccC
Confidence 99999999989999999999999996
No 5
>PF00688 TGFb_propeptide: TGF-beta propeptide; InterPro: IPR001111 The transforming growth factor beta, N terminus (TGFb) domain is present in a variety of proteins which include the transforming growth factor beta, decapentaplegic proteins and bone morphogenetic proteins. Transforming growth factor beta is a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types. The decapentaplegic protein acts as an extracellular morphogen responsible for the proper development of the embryonic dorsal hypoderm, for viability of larvae and for cell viability of the epithelial cells in the imaginal disks. Bone morphogenetic protein induces cartilage and bone formation and may be responsible for epithelial osteogenesis in some organisms.; GO: 0008083 growth factor activity, 0040007 growth; PDB: 3RJR_A.
Probab=99.62 E-value=1.4e-15 Score=132.69 Aligned_cols=129 Identities=28% Similarity=0.387 Sum_probs=71.1
Q ss_pred CCeEEEEEeCCCCCCCCcceEEEEEEeEEEEecCCCCCCCCcccccCcceEEEEEEEEeecCCceeeeccccccccccce
Q psy2425 3 NGQQLLEFPRPKEMDGTELKVKSAVLWVRIEFRSGFPHTLRPIYQKSDRNVTLWVFRVSAQSNATYVSGKEFDEQTEMSA 82 (275)
Q Consensus 3 ~~~~~L~F~~s~~~~~~~~~V~~A~L~ly~~~~~~~~~~~~~~~~~~~~~v~I~vy~~~~~~~~~~l~~~~~~~~~~~i~ 82 (275)
.+++.|.|++|.. + +.+.|.+|+||||+...... .....+.|.||++...... .+ .....+++
T Consensus 102 ~~~~~~~F~ls~~-~-~~~~v~~AeLrl~~~~~~~~---------~~~~~~~v~v~~~~~~~~~---~~---~~~~~~l~ 164 (238)
T PF00688_consen 102 SNRWHLYFDLSSI-P-SSETVSSAELRLYKQPPSNS---------SSPRTVRVSVYQVLQPGRR---NG---SQSKRLLD 164 (238)
T ss_dssp TTEEEEEE-HHHH-S-STTT--EEEEEEEB----------------TT--EEEEEEEE----------S---SS-EEEEE
T ss_pred CceeEEEEecccc-c-ccccceEEEEEEEeeccccc---------ccccccccccccccccccc---cc---ccceeeee
Confidence 4678999999988 6 58999999999999853210 1247789999999632211 00 11234678
Q ss_pred eeeEecCCCCceEEEECcHHHHHHHHcCCCCceEEEEEEcCCCCccccce---eccc-----ccccCCCCcEEEEE
Q psy2425 83 SLTVSLSSSLGWNKFDLTSTVQDWYSSGLQDRLRLLVDCSGCGDLIHPVL---FQQT-----QKAEDSWRPFLVVY 150 (275)
Q Consensus 83 s~~v~~~s~sgW~~fdVT~~v~~Wl~~~~~~~l~l~v~~~~~~~~~~~~~---~~~~-----~~~~~~~~P~L~~~ 150 (275)
++.|... .+||++||||++|++|+.++ ..|++|.|.+...+.....+. +... ......++||||+|
T Consensus 165 s~~v~~~-~~gW~~~dvt~~v~~W~~~~-~~n~gl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PfLVvf 238 (238)
T PF00688_consen 165 SRTVDPS-DSGWVSFDVTSAVRRWLRNP-EKNLGLELEVEDSNGRSLAVHSSGFPGDRHQRLKDTDESKRPFLVVF 238 (238)
T ss_dssp EEEE----S--EEEEE-HHHHHHHHH----S-EEEEEEEEEEETTEEEEEE----------SB--SSSS-SEEEEE
T ss_pred eeeeccc-cCCceeEhHHHHHHHHHhCC-CCCccEEEEEEECCCCccCccccccccccccccccCCCCCCCEEEeC
Confidence 8888887 79999999999999999987 568999998864332221111 1111 12256889999997
No 6
>PF06848 Disaggr_repeat: Disaggregatase related repeat; InterPro: IPR010671 This entry describes several repeats which seem to be specific to the Methanosarcina archaea species and are often found in multiple copies in disaggregatase proteins. Members of this family are also found in single copies in several hypothetical proteins.
Probab=97.63 E-value=0.0014 Score=54.30 Aligned_cols=129 Identities=20% Similarity=0.315 Sum_probs=74.0
Q ss_pred eEEEEEeCCCCCCCCcceEEEEEEeEEEEecCCCCCCCCcccccCcceEEEEEEEEeec--C-----C--c--e--eeec
Q psy2425 5 QQLLEFPRPKEMDGTELKVKSAVLWVRIEFRSGFPHTLRPIYQKSDRNVTLWVFRVSAQ--S-----N--A--T--YVSG 71 (275)
Q Consensus 5 ~~~L~F~~s~~~~~~~~~V~~A~L~ly~~~~~~~~~~~~~~~~~~~~~v~I~vy~~~~~--~-----~--~--~--~l~~ 71 (275)
+-+|.|+||+. + +..+|..|.|-||.--... ..+ ...+.|.||+.... . | . . .-.|
T Consensus 31 Rdll~FDLS~~-~-~~~~I~sAtLsLYwyyp~g---~~r------~~dtviEvYrpa~sW~~~~vTWN~~~~~v~W~naG 99 (182)
T PF06848_consen 31 RDLLWFDLSEY-P-ENAEIDSATLSLYWYYPAG---TSR------PEDTVIEVYRPASSWNESYVTWNKRDKGVAWTNAG 99 (182)
T ss_pred eeEEEEeccCC-C-CCCeEeEEEEEEEEecCCC---cCC------CCCeEEEEEccccccCcccccccccCCCCcccccC
Confidence 34699999988 5 5999999999999863211 111 35678999987530 0 0 0 0 0001
Q ss_pred ccc-cc-----ccccceeeeEecCC--CCceEEEECcHHHHHHHHcCCCCceEEEEEEcCCCCccccceecccccccCCC
Q psy2425 72 KEF-DE-----QTEMSASLTVSLSS--SLGWNKFDLTSTVQDWYSSGLQDRLRLLVDCSGCGDLIHPVLFQQTQKAEDSW 143 (275)
Q Consensus 72 ~~~-~~-----~~~~i~s~~v~~~s--~sgW~~fdVT~~v~~Wl~~~~~~~l~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 143 (275)
... +. -.+-.++.++.... .-.|.++|||+.|+.|+... -.|.|+.|.....+... +.|..........
T Consensus 100 GDwyD~~gvlqg~tpyat~t~~~s~lpdn~y~eldvTeLV~eyvsg~-yeNtGfLIK~r~E~~~y--iAFySse~g~~~q 176 (182)
T PF06848_consen 100 GDWYDKNGVLQGSTPYATITIKGSNLPDNRYYELDVTELVKEYVSGK-YENTGFLIKARTENNNY--IAFYSSECGDENQ 176 (182)
T ss_pred CcchhccCccccCCceEEEEecCCCCCCCceEEccHHHHHHHHhcCC-ccCceEEEEEecCCCce--EEEEecCCCCccc
Confidence 110 11 01112222232211 45799999999999999876 56789988876554432 3343222223445
Q ss_pred CcEE
Q psy2425 144 RPFL 147 (275)
Q Consensus 144 ~P~L 147 (275)
+|-|
T Consensus 177 ~pkl 180 (182)
T PF06848_consen 177 RPKL 180 (182)
T ss_pred ceec
Confidence 5544
No 7
>smart00041 CT C-terminal cystine knot-like domain (CTCK). The structures of transforming growth factor-beta (TGFbeta), nerve growth factor (NGF), platelet-derived growth factor (PDGF) and gonadotropin all form 2 highly twisted antiparallel pairs of beta-strands and contain three disulphide bonds. The domain is non-globular and little is conserved among these presumed homologues except for their cysteine residues. CT domains are predicted to form homodimers.
Probab=96.88 E-value=0.0022 Score=47.06 Aligned_cols=63 Identities=27% Similarity=0.603 Sum_probs=45.1
Q ss_pred CceecceeecccCCCCCCCCCCCcchHHHHHHHhcCCCCCCCCeeeeeeccceeEEEEcCCCcEEEEEcCCeEEecccCC
Q psy2425 196 SGYYANYCRGDCGVRRTPDMYYNHYSHVIEEYRKMDRLSGLQPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGCP 275 (275)
Q Consensus 196 ~~~~a~~C~G~C~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~CC~P~~~~~l~~ly~~~~~~i~~~~~~~m~v~~CgC~ 275 (275)
..+...+|.|.|.....++ . + +.. ....||.|.++....|-+.=.||..+.+.+ |+|++|+|.
T Consensus 16 ~~v~~~~C~G~C~s~~~~~----~-~---------~~~-~~c~CC~p~~~~~~~v~l~C~dg~~~~~~v--~~i~~C~C~ 78 (82)
T smart00041 16 VTVKNAFCEGKCGSASSYS----I-Q---------DVQ-HSCSCCQPHKTKTRQVRLRCPDGSTVKKTV--MHIEECGCE 78 (82)
T ss_pred eEEEcCcEEeECCCeeEcC----c-c---------ccc-cCCCccCCceeEEEEEEEECCCCCEEEEEE--EEEEecccc
Confidence 3488899999995422211 1 0 111 125799999999999988877787766676 999999994
No 8
>PF03045 DAN: DAN domain; InterPro: IPR004133 This domain contains 9 conserved cysteines and is extracellular. Therefore the cysteines may form disulphide bridges. This family of proteins has been termed the DAN family [] after the first member to be reported. This family includes DAN, Cerberus and Gremlin. The gremlin protein is an antagonist of bone morphogenetic protein signalling. It is postulated that all members of this family antagonize different TGF beta TGF-beta ligands [].
Probab=94.07 E-value=0.16 Score=40.07 Aligned_cols=88 Identities=20% Similarity=0.412 Sum_probs=56.9
Q ss_pred CCeeeeeEEEEeccCCceeeeecCCceecceeecccCCCCCCCCCCCcchHHHHHHHhcCCCCCCCCeeeeeeccceeEE
Q psy2425 172 GQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEEYRKMDRLSGLQPCCAPVKFSPMSLI 251 (275)
Q Consensus 172 ~~Ccr~~~~V~F~~lgw~~wIi~P~~~~a~~C~G~C~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~CC~P~~~~~l~~l 251 (275)
..|...++.=.-..-|=. +.....++|.|.|.....|........ ..+ ...-.||.|++..-+.+-
T Consensus 28 ~~Ck~~p~~Q~I~~~GC~-----s~~I~N~~C~GqC~S~~iP~~~~~~~~--------~~~-~~~C~~C~P~~~~~~~V~ 93 (121)
T PF03045_consen 28 DWCKTVPFTQVISHPGCE-----SVTIQNNFCFGQCSSFYIPSSVPSDPG--------SQP-FQSCSCCQPSRFRWVTVT 93 (121)
T ss_pred CccEEEeeEEEECcCCce-----EEEEEeeeeEEEcceEEeeCCcccccc--------ccc-CcccCccCCCeeEEEEEE
Confidence 578888887666666655 778889999999965444432110000 001 234568999999998887
Q ss_pred EEcCCCcE--EEEEcCCeEEecccCC
Q psy2425 252 YFGPDSNI--IKRDLPKMVVDECGCP 275 (275)
Q Consensus 252 y~~~~~~i--~~~~~~~m~v~~CgC~ 275 (275)
..=.++.- ..+.+ |+|++|.|.
T Consensus 94 L~C~~~~~~~~~k~v--~~v~~C~C~ 117 (121)
T PF03045_consen 94 LRCPGGSPPFRVKRV--QIVEECSCS 117 (121)
T ss_pred EECcCCCCCcceEEE--EEeeecccC
Confidence 76333322 13444 899999994
No 9
>PF00007 Cys_knot: Cystine-knot domain; InterPro: IPR006208 This domain is found at the C-terminal of glycoprotein hormones and various extracellular proteins. It is believed to be involved in disulphide-linked dimerisation. ; PDB: 1QFW_B 1HRP_B 1HCN_B 1XWD_B 1FL7_B.
Probab=89.62 E-value=0.63 Score=35.53 Aligned_cols=84 Identities=18% Similarity=0.382 Sum_probs=50.2
Q ss_pred CeeeeeEEEEeccCCceeeeecCCceecceeecccCCCCCCCCCCCcchHHHHHHHhcCCCCCCCCeeeeeeccceeEEE
Q psy2425 173 QCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEEYRKMDRLSGLQPCCAPVKFSPMSLIY 252 (275)
Q Consensus 173 ~Ccr~~~~V~F~~lgw~~wIi~P~~~~a~~C~G~C~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~CC~P~~~~~l~~ly 252 (275)
.|.+....|.++.-|=..| ..++..+|.|.|.... +. ... . ........||.|.......++.
T Consensus 3 ~C~~~~~ti~ve~~gC~s~----~~v~~~~C~G~C~s~~-~~--~~~-~---------~~~~~~~~Cc~~~~~~~~~v~~ 65 (105)
T PF00007_consen 3 GCHLTNVTIKVEKSGCRSC----KTVNTTYCSGYCESSE-PY--SKD-P---------RKFQSQCVCCYPERTYETVVLL 65 (105)
T ss_dssp BSEEEEEEEEEEECCCTEE----EEEEEEEEEEEEEEE---S--CTT-T---------TT----EEEEEEEEEEEEEEET
T ss_pred CCeEeeeEEEEEeCCCCCc----eEEEEEEEEEEecCCe-Ee--ccc-C---------CcCcccCcCCCcceEEEEEECC
Confidence 5777777777766665432 5789999999995211 10 000 0 0011224589888887766665
Q ss_pred EcCCCcEEEEEcCCeEEecccCC
Q psy2425 253 FGPDSNIIKRDLPKMVVDECGCP 275 (275)
Q Consensus 253 ~~~~~~i~~~~~~~m~v~~CgC~ 275 (275)
-=.+|.-...+| |+|.+|.|.
T Consensus 66 ~C~~G~~~~~~y--~~a~sC~C~ 86 (105)
T PF00007_consen 66 GCPDGVDPTFTY--PVATSCSCS 86 (105)
T ss_dssp TBTTCS-EEEEE--EEEEEEEEE
T ss_pred CCccCCcceEEe--eEeeeeeCC
Confidence 444565544566 789999984
No 10
>PF05463 Sclerostin: Sclerostin (SOST); InterPro: IPR008835 This family contains several mammalian sclerostin (SOST) proteins. SOST is thought to suppress bone formation. Mutations of the SOST gene lead to sclerosteosis, a progressive sclerosing bone dysplasia with an autosomal recessive mode of inheritance. Radiologically, it is characterised by a generalised hyperostosis and sclerosis leading to a markedly thickened and sclerotic skull, with mandible, ribs, clavicles and all long bones also being affected. Due to narrowing of the foramina of the cranial nerves, facial nerve palsy, hearing loss and atrophy of the optic nerves can occur. Sclerosteosis is clinically and radiologically very similar to van Buchem disease, mainly differentiated by hand malformations and a large stature in sclerosteosis patients [].; GO: 0005615 extracellular space; PDB: 2KD3_A 3SOV_Z 2K8P_A.
Probab=73.25 E-value=6.4 Score=33.35 Aligned_cols=91 Identities=19% Similarity=0.261 Sum_probs=37.8
Q ss_pred CCeeeeeEEEEeccCCceeeeecCCceecceeeccc-CCCCCCCCCCCcchHHHHHHHhcCCCCCCCCeeeeeeccceeE
Q psy2425 172 GQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDC-GVRRTPDMYYNHYSHVIEEYRKMDRLSGLQPCCAPVKFSPMSL 250 (275)
Q Consensus 172 ~~Ccr~~~~V~F~~lgw~~wIi~P~~~~a~~C~G~C-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~CC~P~~~~~l~~ 250 (275)
..+|+.--+=.|-.-| .-.+=+-..-=.|.|+| +.+..|... ... . | .-....+.-=|+|.+.....|
T Consensus 65 ~~~CrELrstrYisdG---~C~S~kPikelvCsGqClP~~llPn~I-g~~-k----~--W~R~~~~e~RCv~d~~RtqrV 133 (198)
T PF05463_consen 65 QVGCRELRSTRYISDG---QCRSAKPIKELVCSGQCLPAHLLPNWI-GRG-K----Y--WWRRSAQEWRCVPDHTRTQRV 133 (198)
T ss_dssp TTSS-CEEEEE--EET---TEEESS-EEEEEE----S-----TTST-TSS-S-------SSSSS------EEEEEEEEEE
T ss_pred cCccceeeeeeeeecC---cccccCchhhheeeccccccccCcccc-ccc-c----e--ecccCCCcccccCCcceeEEE
Confidence 3455543333333333 23444555666899999 443333211 000 0 1 111234456799999998877
Q ss_pred EEEcCCCcEEEEEcCCeEEecccCC
Q psy2425 251 IYFGPDSNIIKRDLPKMVVDECGCP 275 (275)
Q Consensus 251 ly~~~~~~i~~~~~~~m~v~~CgC~ 275 (275)
=..=.||+.. +|.=-+|.+|.|.
T Consensus 134 qL~C~dG~tR--TyKI~vVtSCKCK 156 (198)
T PF05463_consen 134 QLQCPDGTTR--TYKIRVVTSCKCK 156 (198)
T ss_dssp EEE-TTTSSE--EEEEEEEEEEE--
T ss_pred EEECCCCCee--EEEEEEEEEeeec
Confidence 7776777764 3444899999993
No 11
>cd00135 PDGF Platelet-derived and vascular endothelial growth factors (PDGF, VEGF) family domain; PDGF is a potent activator for cells of mesenchymal origin; PDGF-A and PDGF-B form AA and BB homodimers and an AB heterodimer; VEGF is a potent mitogen in embryonic and somatic angiogenesis with a unique specificity for vascular endothelial cells; VEGF forms homodimers and exists in 4 different isoforms; overall, the VEGF monomer resembles that of PDGF, but its N-terminal segment is helical rather than extended; the cysteine knot motif is a common feature of this domain
Probab=69.75 E-value=7.4 Score=28.67 Aligned_cols=55 Identities=22% Similarity=0.382 Sum_probs=39.3
Q ss_pred CeeeeeEEEEec-cCCce-eeeecCCceecceeecccCCCCCCCCCCCcchHHHHHHHhcCCCCCCCCeeeeeeccceeE
Q psy2425 173 QCCKQKFYVSFK-QLGWE-DWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEEYRKMDRLSGLQPCCAPVKFSPMSL 250 (275)
Q Consensus 173 ~Ccr~~~~V~F~-~lgw~-~wIi~P~~~~a~~C~G~C~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~CC~P~~~~~l~~ 250 (275)
.|.-++..|+.. ++.=. +.|..|.=.....|.|=|+... -=|+|++.+.+.|
T Consensus 2 ~C~Pr~~~V~i~~e~~~~~~~~y~P~Cv~v~RCgGCC~~~~--------------------------~~C~pt~t~~v~~ 55 (86)
T cd00135 2 SCKPRETLVEISEELPDETNTIFKPPCVEVKRCGGCCNDES--------------------------LECVPTETSNVTM 55 (86)
T ss_pred ccccccEEEECcccCCCCcCCEEECCeEEEccccCCCCCCC--------------------------CEEECCEEEEEEE
Confidence 466677778775 33322 4789999999999999885210 1399999988776
Q ss_pred EEE
Q psy2425 251 IYF 253 (275)
Q Consensus 251 ly~ 253 (275)
-.+
T Consensus 56 ~v~ 58 (86)
T cd00135 56 QVL 58 (86)
T ss_pred EEE
Confidence 665
No 12
>smart00141 PDGF Platelet-derived and vascular endothelial growth factors (PDGF, VEGF) family. Platelet-derived growth factor is a potent activator for cells of mesenchymal origin. PDGF-A and PDGF-B form AA and BB homodimers and an AB heterodimer. Members of the VEGF family are homologues of PDGF.
Probab=65.07 E-value=14 Score=27.06 Aligned_cols=55 Identities=16% Similarity=0.396 Sum_probs=40.1
Q ss_pred CeeeeeEEEEec-cCCce-eeeecCCceecceeecccCCCCCCCCCCCcchHHHHHHHhcCCCCCCCCeeeeeeccceeE
Q psy2425 173 QCCKQKFYVSFK-QLGWE-DWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEEYRKMDRLSGLQPCCAPVKFSPMSL 250 (275)
Q Consensus 173 ~Ccr~~~~V~F~-~lgw~-~wIi~P~~~~a~~C~G~C~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~CC~P~~~~~l~~ 250 (275)
.|.-++..|+.. +++=. +.|..|.=-....|.|=|+... -=|+|++...+.|
T Consensus 2 ~C~pre~~V~i~~e~~~~~~~~y~P~Cv~v~RCgGCCn~e~--------------------------l~C~pt~t~~v~~ 55 (83)
T smart00141 2 ECKPREVVVEVSREYPDETNFLFKPPCVTVQRCGGCCNDEG--------------------------LECVPTETHNVTM 55 (83)
T ss_pred CCceeeEEEECchhcCCccCcEEecCcEEeceecCCCCCCC--------------------------CEEEccEEEEEEE
Confidence 477777778775 34322 5789999999999999995311 1399999988776
Q ss_pred EEE
Q psy2425 251 IYF 253 (275)
Q Consensus 251 ly~ 253 (275)
-.+
T Consensus 56 ~v~ 58 (83)
T smart00141 56 QLL 58 (83)
T ss_pred EEE
Confidence 654
No 13
>PF02512 UK: Virulence determinant
Probab=63.06 E-value=5 Score=29.00 Aligned_cols=16 Identities=31% Similarity=0.802 Sum_probs=12.1
Q ss_pred CCCCCeeeeeecccee
Q psy2425 234 SGLQPCCAPVKFSPMS 249 (275)
Q Consensus 234 ~~~~~CC~P~~~~~l~ 249 (275)
+..-|||||.+|.+-.
T Consensus 62 gndvpcccprkmtsad 77 (96)
T PF02512_consen 62 GNDVPCCCPRKMTSAD 77 (96)
T ss_pred CCCCCccCCccccccc
Confidence 3446999999998743
No 14
>PF10330 Stb3: Putative Sin3 binding protein; InterPro: IPR018818 This entry represents Sin3 binding proteins conserved in fungi. Sin3p does not bind DNA directly even though the yeast SIN3 gene functions as a transcriptional repressor. Sin3p is part of a large multiprotein complex []. Stb3 appears to bind directly to ribosomal RNA Processing Elements (RRPE) although there are no obvious domains which would accord with this, implying that Stb3 may be a novel RNA-binding protein [].
Probab=53.10 E-value=7.9 Score=28.80 Aligned_cols=18 Identities=33% Similarity=0.824 Sum_probs=14.7
Q ss_pred EEEeccCCceeeeecCCc
Q psy2425 180 YVSFKQLGWEDWIIAPSG 197 (275)
Q Consensus 180 ~V~F~~lgw~~wIi~P~~ 197 (275)
.|-|+.+||..|-....+
T Consensus 61 ~VvFEKvGWGrW~ar~~~ 78 (92)
T PF10330_consen 61 DVVFEKVGWGRWDARRVG 78 (92)
T ss_pred CEEEEEeccceeeeeecC
Confidence 489999999999876554
No 15
>PF00341 PDGF: PDGF/VEGF domain; InterPro: IPR000072 Platelet-derived growth factor (PDGF) [, ] is a potent mitogen for cells of mesenchymal origin, including smooth muscle cells and glial cells. In both mouse and human, the PDGF signalling network consists of four ligands, PDGFA-D, and two receptors, PDGFRalpha and PDGFRbeta. All PDGFs function as secreted, disulphide-linked homodimers, but only PDGFA and B can form functional heterodimers. PDGFRs also function as homo- and heterodimers. All known PDGFs have characteristic `PDGF domains', which include eight conserved cysteines that are involved in inter- and intramolecular bonds. Alternate splicing of the A chain transcript can give rise to two different forms that differ only in their C-terminal extremity. The transforming protein of Woolly monkey sarcoma virus (WMSV) (Simian sarcoma virus), encoded by the v-sis oncogene, is derived from the B chain of PDGF. PDGFs are mitogenic during early developmental stages, driving the proliferation of undifferentiated mesenchyme and some progenitor populations. During later maturation stages, PDGF signalling has been implicated in tissue remodelling and cellular differentiation, and in inductive events involved in patterning and morphogenesis. In addition to driving mesenchymal proliferation, PDGFs have been shown to direct the migration, differentiation and function of a variety of specialised mesenchymal and migratory cell types, both during development and in the adult animal []. Other growth factors in this family include vascular endothelial growth factors B and C (VEGF-B, VEGF-C) [, ] which are active in angiogenesis and endothelial cell growth, and placenta growth factor (PlGF) which is also active in angiogenesis []. PDGF is structurally related to a number of other growth factors which also form disulphide-linked homo- or heterodimers.; GO: 0008083 growth factor activity, 0016020 membrane; PDB: 1WQ9_B 1RV6_W 1FZV_B 3MJK_Y 2XAC_B 2C7W_B 2VWE_A 2FJG_V 2QR0_U 1MJV_A ....
Probab=31.67 E-value=87 Score=22.52 Aligned_cols=55 Identities=20% Similarity=0.363 Sum_probs=36.0
Q ss_pred eeeeeEEEEec-cCCce-eeeecCCceecceeecccCCCCCCCCCCCcchHHHHHHHhcCCCCCCCCeeeeeeccceeEE
Q psy2425 174 CCKQKFYVSFK-QLGWE-DWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEEYRKMDRLSGLQPCCAPVKFSPMSLI 251 (275)
Q Consensus 174 Ccr~~~~V~F~-~lgw~-~wIi~P~~~~a~~C~G~C~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~CC~P~~~~~l~~l 251 (275)
|.-++..|+.. ++.=+ +-|..|.=.....|.|=|.... --|+|++...+.|=
T Consensus 1 C~Pr~~~V~i~~e~~~~~~~~y~P~Cv~v~RC~GCC~~~~--------------------------~~C~p~~t~~v~~~ 54 (82)
T PF00341_consen 1 CKPRETLVEIRDEYPDEPSVIYSPSCVVVHRCGGCCNDEG--------------------------LECVPTETENVTMQ 54 (82)
T ss_dssp SEEEEEEEEHHHHSTTCTSSEEESSEEEEEEEESBCSSTT--------------------------EEEEEEEEEEEEEE
T ss_pred CCcEEEEEEchhhcCCCCccEEecCcEEEccccCCCCCCC--------------------------EEEeCCcEEEEEEE
Confidence 45566777773 22211 2344599999999999985311 13999999887765
Q ss_pred EEc
Q psy2425 252 YFG 254 (275)
Q Consensus 252 y~~ 254 (275)
++.
T Consensus 55 v~~ 57 (82)
T PF00341_consen 55 VMK 57 (82)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 16
>KOG4457|consensus
Probab=31.38 E-value=41 Score=28.08 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=23.5
Q ss_pred eccceeEEEEcCCCcEEEEEcCCeEEec
Q psy2425 244 KFSPMSLIYFGPDSNIIKRDLPKMVVDE 271 (275)
Q Consensus 244 ~~~~l~~ly~~~~~~i~~~~~~~m~v~~ 271 (275)
=|+.-|++|.|++|-|.+..+..|..++
T Consensus 146 wyDgYSv~yl~~~GlI~kh~ldK~mpde 173 (202)
T KOG4457|consen 146 WYDGYSVLYLDGNGLIYKHTLDKMMPDE 173 (202)
T ss_pred cccceeEEEECCCceEEeeehhhhCccc
Confidence 3667799999999999998998887654
No 17
>PF10430 Ig_Tie2_1: Tie-2 Ig-like domain 1; InterPro: IPR018941 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. Angiogenesis is a physiological process whereby new blood vessels are formed from existing ones. It is essential for tissue repair and regeneration during wound healing but also plays important roles in many pathological processes including tumor growth and metastasis [, ]. Angiogenesis is regulated in part by the receptor protein tyrosine kinase Tie2 and its ligands, the angiopoietins. The angiopoietin-binding site is harbord by the N-terminal two immunoglobulin-like (Ig-like) domains of Tie2 []. The angiopoietin-1 receptor contains the Tie-2 Ig-like domain. This protein is a tyrosine-kinase transmembrane receptor for angiopoietin 1. It probably regulates endothelial cell proliferation, differentiation and guides the proper patterning of endothelial cells during blood vessel formation. Tie2 contains not two but three immunoglobulin domains. They fold together with the three epidermal growth factor domains to form a compact, arrowhead-shaped structure [].; GO: 0004714 transmembrane receptor protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0007169 transmembrane receptor protein tyrosine kinase signaling pathway, 0005887 integral to plasma membrane; PDB: 2GY7_B 2GY5_A.
Probab=28.54 E-value=20 Score=26.65 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=12.3
Q ss_pred eeecCCceecceeecccCC
Q psy2425 191 WIIAPSGYYANYCRGDCGV 209 (275)
Q Consensus 191 wIi~P~~~~a~~C~G~C~~ 209 (275)
|==+-+.+-||||.|.|..
T Consensus 68 rekas~~~GayyCegk~r~ 86 (96)
T PF10430_consen 68 REKASEAIGAYYCEGKVRD 86 (96)
T ss_dssp TTT-SS--EEEEEEEEETT
T ss_pred eeccccccceEEEEEEecC
Confidence 3345678999999999953
No 18
>PRK03760 hypothetical protein; Provisional
Probab=23.80 E-value=63 Score=25.16 Aligned_cols=16 Identities=13% Similarity=0.584 Sum_probs=13.9
Q ss_pred cceeEEEEcCCCcEEE
Q psy2425 246 SPMSLIYFGPDSNIIK 261 (275)
Q Consensus 246 ~~l~~ly~~~~~~i~~ 261 (275)
-||.|+|+|.+|.|+.
T Consensus 59 ~pLDiiFld~~g~Vv~ 74 (117)
T PRK03760 59 SSIDVIFLDSNRRVVD 74 (117)
T ss_pred CeeEEEEECCCCeEEE
Confidence 4999999999998774
No 19
>PHA02661 vascular endothelial growth factor like protein; Provisional
Probab=21.40 E-value=4.1e+02 Score=21.60 Aligned_cols=56 Identities=16% Similarity=0.309 Sum_probs=41.2
Q ss_pred CCeeeeeEEEEec-cCCce-eeeecCCceecceeecccCCCCCCCCCCCcchHHHHHHHhcCCCCCCCCeeeeeecccee
Q psy2425 172 GQCCKQKFYVSFK-QLGWE-DWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEEYRKMDRLSGLQPCCAPVKFSPMS 249 (275)
Q Consensus 172 ~~Ccr~~~~V~F~-~lgw~-~wIi~P~~~~a~~C~G~C~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~CC~P~~~~~l~ 249 (275)
..|.-++..|+.. ++.=+ +.|..|.=-....|.|=|+... -=|+|++...++
T Consensus 46 s~CkPRetvV~I~~E~p~~~n~~y~PsCV~V~RCgGCCnde~--------------------------l~C~PT~t~nVt 99 (146)
T PHA02661 46 SSCQPRDTVVQLSDEYPGNTNDRYNPRCVTVRRCGGCCNDES--------------------------QICTPTETSNVT 99 (146)
T ss_pred cCceeeeEEEECccccCccccceEccCcEEeccccCCCCCCC--------------------------CeEEeeeEEEEE
Confidence 4688888888864 34322 4788899999999999886321 139999999988
Q ss_pred EEEE
Q psy2425 250 LIYF 253 (275)
Q Consensus 250 ~ly~ 253 (275)
|-.+
T Consensus 100 m~v~ 103 (146)
T PHA02661 100 VTVM 103 (146)
T ss_pred EEEE
Confidence 7664
No 20
>COG1430 Uncharacterized conserved protein [Function unknown]
Probab=21.13 E-value=80 Score=25.03 Aligned_cols=16 Identities=19% Similarity=0.715 Sum_probs=13.3
Q ss_pred cceeEEEEcCCCcEEE
Q psy2425 246 SPMSLIYFGPDSNIIK 261 (275)
Q Consensus 246 ~~l~~ly~~~~~~i~~ 261 (275)
-||.|+|.|+||.|+.
T Consensus 62 lpLDiiFid~dg~i~~ 77 (126)
T COG1430 62 LPLDIIFIDSDGRVVD 77 (126)
T ss_pred cceEEEEEcCCCCEEE
Confidence 3799999999998763
Done!