Query psy2425
Match_columns 275
No_of_seqs 216 out of 1008
Neff 7.7
Searched_HMMs 29240
Date Sat Aug 17 00:38:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2425.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2425hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rjr_A Transforming growth fac 100.0 2.5E-55 8.7E-60 404.3 16.4 237 4-275 102-363 (363)
2 3evs_B Growth/differentiation 100.0 2.4E-43 8.2E-48 275.7 8.9 103 171-275 13-117 (117)
3 1zkz_A Growth/differentiation 100.0 6.8E-43 2.3E-47 270.4 10.0 103 171-275 5-110 (110)
4 2h62_A BMP-2, BMP-2A, bone mor 100.0 2.7E-43 9.1E-48 274.2 7.4 102 171-275 11-114 (114)
5 2r52_A BMP-6, bone morphogenet 100.0 2.3E-42 8E-47 278.4 9.7 103 171-275 39-143 (143)
6 3hh2_A Growth/differentiation 100.0 4.8E-42 1.6E-46 265.1 8.6 107 162-275 2-109 (109)
7 1lxi_A Bone morphogenetic prot 100.0 3.7E-42 1.3E-46 276.1 7.8 103 171-275 35-139 (139)
8 2qcq_A Bone morphogenetic prot 100.0 7.1E-42 2.4E-46 264.7 8.6 103 171-275 5-110 (110)
9 2arp_A Inhibin beta A chain; c 100.0 9.7E-42 3.3E-46 266.6 7.3 111 164-275 2-116 (116)
10 2tgi_A Transforming growth fac 100.0 3.3E-40 1.1E-44 256.0 5.9 104 165-275 6-112 (112)
11 2ask_A Artemin; glial cell der 100.0 1.4E-31 4.6E-36 206.3 5.4 91 171-275 13-112 (113)
12 1agq_A GDNF, glial cell-derive 100.0 5.4E-30 1.8E-34 201.5 7.7 91 171-275 39-135 (135)
13 2k8p_A Sclerostin; WNT signall 94.3 0.084 2.9E-06 42.8 6.1 90 172-275 53-144 (189)
14 2c7w_A Vascular endothelial gr 58.4 35 0.0012 24.7 6.7 56 172-253 15-72 (99)
15 1fzv_A PLGF-1, placenta growth 48.6 47 0.0016 25.4 6.3 56 172-253 33-90 (132)
16 3mjk_A Platelet-derived growth 42.1 69 0.0024 25.6 6.5 39 170-208 72-114 (169)
17 2gnn_A Vascular endothelial gr 34.0 94 0.0032 23.5 5.9 57 172-254 20-78 (127)
18 2xv7_A Vascular endothelial gr 32.7 76 0.0026 23.5 5.0 56 172-253 20-77 (112)
19 2vwe_A Vascular endothelial gr 32.1 1.1E+02 0.0038 24.2 6.4 57 172-254 24-82 (167)
20 2x1w_A Vascular endothelial gr 30.7 1E+02 0.0036 22.7 5.5 56 172-253 18-75 (110)
21 4hqu_A Platelet-derived growth 30.6 76 0.0026 23.3 4.8 38 171-208 13-54 (109)
22 3mjg_A Platelet-derived growth 26.2 1.1E+02 0.0038 24.4 5.3 38 171-208 74-115 (172)
23 3v2a_A Vascular endothelial gr 21.8 1.3E+02 0.0044 23.0 4.7 56 172-253 37-94 (134)
24 3m7a_A Uncharacterized protein 20.8 53 0.0018 25.3 2.4 16 246-261 82-97 (140)
25 1mkk_A Vascular endothelial gr 20.5 2.4E+02 0.0081 20.0 6.1 56 172-253 12-69 (96)
26 3pjy_A Hypothetical signal pep 20.3 55 0.0019 25.1 2.4 23 246-269 68-90 (136)
No 1
>3rjr_A Transforming growth factor beta-1; TGF beta, activation, integrin, cytokine; HET: NAG; 3.05A {Sus scrofa}
Probab=100.00 E-value=2.5e-55 Score=404.29 Aligned_cols=237 Identities=23% Similarity=0.463 Sum_probs=172.0
Q ss_pred CeEEEEEeCCCCCCC---CcceEEEEEEeEEEEecCCCCCCCCcccccCcceEEEEEEEEeecCCceeeecccccccccc
Q psy2425 4 GQQLLEFPRPKEMDG---TELKVKSAVLWVRIEFRSGFPHTLRPIYQKSDRNVTLWVFRVSAQSNATYVSGKEFDEQTEM 80 (275)
Q Consensus 4 ~~~~L~F~~s~~~~~---~~~~V~~A~L~ly~~~~~~~~~~~~~~~~~~~~~v~I~vy~~~~~~~~~~l~~~~~~~~~~~ 80 (275)
....|.||+|++ |. .++.|.+||||||+... ....+|.||+.. ++. .+.+
T Consensus 102 ~~~~f~FnlS~i-p~~~~~~e~l~~AELRlyk~~~--------------~~~~rI~vYq~~--~~~----------~~rl 154 (363)
T 3rjr_A 102 HSLYMLFNTSEL-REAVPEPVLLSRAELRLLRLKL--------------KVEQHVELYQKY--SQD----------SWRY 154 (363)
T ss_dssp TEEEEEECHHHH-HHHSSSTTTCCEEEEEEEBCCT--------------TCCEEEEEEEEC--SSS----------CEEE
T ss_pred ceEEEEEECccC-cccCCCcceeeeeEEEeEecCC--------------CceEEEEEEecC--CCC----------ceEE
Confidence 356899999977 41 26679999999997521 134679999842 111 2357
Q ss_pred ceeeeEecCCCCceEEEECcHHHHHHHHcCCCCceEEEEEEcC-CCC--ccccceec-c---ccccc----CCCCcEEEE
Q psy2425 81 SASLTVSLSSSLGWNKFDLTSTVQDWYSSGLQDRLRLLVDCSG-CGD--LIHPVLFQ-Q---TQKAE----DSWRPFLVV 149 (275)
Q Consensus 81 i~s~~v~~~s~sgW~~fdVT~~v~~Wl~~~~~~~l~l~v~~~~-~~~--~~~~~~~~-~---~~~~~----~~~~P~L~~ 149 (275)
++++.|.....+||++||||+||++|+.++ ..|+||.|.+.. |.. ....+.+. . ..+.. ..++|||++
T Consensus 155 Ldsr~v~~~~~~gW~sFDVt~aV~~Wl~~~-~~n~GL~v~v~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~PfLv~ 233 (363)
T 3rjr_A 155 LSNRLLAPSDSPEWLSFDVTGVVRQWLTRR-EAIEGFRLSAHCSCDSKDNTLHVEINGFNSGRRGDLATIHGMNRPFLLL 233 (363)
T ss_dssp EEEEEECCCSSCCEEEEECHHHHHHHHHCC-CSCEEEEEEECEEEEEETTEEEEEECC-------CSBCCSSSSCSEEEE
T ss_pred EEEEEecCCCCCCEEEEECHHHHHHHHhCC-CcCcceEEEEeecCCCCCcccceeeccccccccCccccccccCCcEEEE
Confidence 899999875478999999999999999987 678888776542 111 11112111 0 01111 478999999
Q ss_pred EeCCCc-----ccccccccCC---CCCCCCCCeeeeeEEEEec-cCCceeeeecCCceecceeecccCCCCCCCCCCCcc
Q psy2425 150 YTDPTV-----TRRVKRRALD---CSATTKGQCCKQKFYVSFK-QLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNHY 220 (275)
Q Consensus 150 ~~~~~~-----~~r~rR~~~~---c~~~~~~~Ccr~~~~V~F~-~lgw~~wIi~P~~~~a~~C~G~C~~~~~~~~~~~~~ 220 (275)
|+.+.. ++||+||+.+ |..+.+..|||+++||||+ |||| +|||||+||+||||.|+|+++.. +.+
T Consensus 234 ~~~~~~~~~~~~~~r~kr~~~~~~c~~~~~~~Ccr~~~~VdF~~dlGW-~WIiaP~gy~a~yC~G~C~~~~~-----~~t 307 (363)
T 3rjr_A 234 MATPLERAQHLHSSRHRRALDTNYCFSSTEKNCCVRQLYIDFRKDLGW-KWIHEPKGYHANFCLGPCPYIWS-----LDT 307 (363)
T ss_dssp EECCHHHHHC--------CBCTTTTTTSCCCSSEEECCEEEHHHHHCC-CSEEECSEEECCEEESCCCCTTT-----SCS
T ss_pred EeccccccccccccccccccccccccccccCCccccceEEEeecccCc-ceecCCCcccceEeeeeCCCCcc-----CCC
Confidence 997531 2344445543 7766667999999999995 9999 59999999999999999998754 244
Q ss_pred hHHHHH--HHhcCCCCCCCCeeeeeeccceeEEEEcCCCcEEEEEcCCeEEecccCC
Q psy2425 221 SHVIEE--YRKMDRLSGLQPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGCP 275 (275)
Q Consensus 221 ~h~~~~--~~~~~~~~~~~~CC~P~~~~~l~~ly~~~~~~i~~~~~~~m~v~~CgC~ 275 (275)
+|++.| ++.++|..+++|||+|++|+||+|||+|+++++ +++|+||||++|||+
T Consensus 308 ~ha~v~~l~~~~~p~~~~~pCCvPt~l~~ls~ly~~~~~~~-~~~~~~Mvv~~CgCs 363 (363)
T 3rjr_A 308 QYSKVLALYNQHNPGASAAPCCVPQALEPLPIVYYVGRKPK-VEQLSNMIVRSCKCS 363 (363)
T ss_dssp CCHHHHHHTSSCCSSSSSSCCEEECSEEEEEEEEEETTEEE-EEEEEEEEECCEEEC
T ss_pred chHHHHHHHHhcCCCcCCCCccccccccceEEEEEeCCeeE-EEEcCCcEEEecccC
Confidence 566554 667777788999999999999999999987654 589999999999997
No 2
>3evs_B Growth/differentiation factor 5; ligand-receptor complex, cystin-knot ligand, three-finger to (receptor); 2.10A {Homo sapiens} SCOP: g.17.1.0 PDB: 1waq_A 3qb4_A 2bhk_A
Probab=100.00 E-value=2.4e-43 Score=275.66 Aligned_cols=103 Identities=34% Similarity=0.792 Sum_probs=93.4
Q ss_pred CCCeeeeeEEEEeccCCceeeeecCCceecceeecccCCCCCCCCCCCcchHHHHH--HHhcCCCCCCCCeeeeeeccce
Q psy2425 171 KGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEE--YRKMDRLSGLQPCCAPVKFSPM 248 (275)
Q Consensus 171 ~~~Ccr~~~~V~F~~lgw~~wIi~P~~~~a~~C~G~C~~~~~~~~~~~~~~h~~~~--~~~~~~~~~~~~CC~P~~~~~l 248 (275)
+..|||++|||||+||||++|||||+||+||||.|+|+++.. ..++.++|++.| ++..++..+++|||+|++|+||
T Consensus 13 ~~~C~r~~l~V~F~dlGW~~WIiaP~gy~a~yC~G~C~~p~~--~~~~~tnHa~iq~l~~~~~p~~~~~pCCvPt~l~~l 90 (117)
T 3evs_B 13 KARCSRKALHVNFKDMGWDDWIIAPLEYEAFHCEGLCEFPLR--SHLEPTNHAVIQTLMNSMDPESTPPTCCVPTRLSPI 90 (117)
T ss_dssp -CBSEEECCEEETGGGTGGGTEEECSEEECCEEESBCCSSCC--GGGCCCHHHHHHHHHHHHCTTTCCCCCEEEEEEEEE
T ss_pred CCCcEEEEEEEEHHHCCCcceeeCCCcccceeeeeECCCCcc--cccCCchHHHHHHHHHhcCCCCCCCCCEeceeeccE
Confidence 468999999999999999999999999999999999998754 245778998876 5667787889999999999999
Q ss_pred eEEEEcCCCcEEEEEcCCeEEecccCC
Q psy2425 249 SLIYFGPDSNIIKRDLPKMVVDECGCP 275 (275)
Q Consensus 249 ~~ly~~~~~~i~~~~~~~m~v~~CgC~ 275 (275)
+|||+|++++|++++|+||+|++|||+
T Consensus 91 s~ly~d~~~~v~~~~~~~Mvv~~CgCr 117 (117)
T 3evs_B 91 SILFIDSANNVVYKQYEDMVVESCGCR 117 (117)
T ss_dssp EEEEECTTSCEEEEEEEEEEEEEEEEC
T ss_pred EEEEEeCCCCEEEEEcCCeEEeecccC
Confidence 999999999999999999999999997
No 3
>1zkz_A Growth/differentiation factor 2; glycoprotein, growth factor, cytokine, hormone-growth factor; 2.33A {Homo sapiens}
Probab=100.00 E-value=6.8e-43 Score=270.39 Aligned_cols=103 Identities=31% Similarity=0.610 Sum_probs=93.6
Q ss_pred CCCeeeeeEEEEeccCCceeeeecCCceecceeecccCCCCCCCCCCCcchHHHHH--HHhcCCCCCCCCeeeeeeccce
Q psy2425 171 KGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEE--YRKMDRLSGLQPCCAPVKFSPM 248 (275)
Q Consensus 171 ~~~Ccr~~~~V~F~~lgw~~wIi~P~~~~a~~C~G~C~~~~~~~~~~~~~~h~~~~--~~~~~~~~~~~~CC~P~~~~~l 248 (275)
.+.|||++|||||+||||++|||||+||+||||.|+|+++... .++.++|++.| ++..++..+++|||+|++|+||
T Consensus 5 ~~~C~r~~l~VdF~dlGW~~WIiaP~gy~a~yC~G~C~~~~~~--~~~~tnHaivq~l~~~~~~~~~~~pCCvPt~l~~l 82 (110)
T 1zkz_A 5 GSHCQKTSLRVNFEDIGWDSWIIAPKEYEAYECKGGCFFPLAD--DVTPTKHAIVQTLVHLKFPTKVGKACCVPTKLSPI 82 (110)
T ss_dssp CCBSEEEEEEEETTTTTCTTTEEECSEEEEEEEESBCCSSCCT--TSCCCHHHHHHHHHHHHSTTTSCCCCEEEEEEEEE
T ss_pred CCCcEEEEEEEEeeccCCcceEECCCceEeEEeEeECCCCccc--ccCCCchHHHHHHHHhcCCCCCCCCcccceeEccE
Confidence 4689999999999999999999999999999999999988653 36788999876 4566777788999999999999
Q ss_pred eEEEEcCCCcEEEE-EcCCeEEecccCC
Q psy2425 249 SLIYFGPDSNIIKR-DLPKMVVDECGCP 275 (275)
Q Consensus 249 ~~ly~~~~~~i~~~-~~~~m~v~~CgC~ 275 (275)
+|||+|++|+|+++ +|+||+|++|||+
T Consensus 83 s~ly~d~~~~v~~~~~~~~Mvv~~CgC~ 110 (110)
T 1zkz_A 83 SVLYKDDMGVPTLKYHYEGMSVAECGCR 110 (110)
T ss_dssp EEEEECTTCCEEEEEEEEEEEEEEEEEC
T ss_pred EEEEEeCCCCEEEeeEeCCEEEEecccC
Confidence 99999999999999 9999999999996
No 4
>2h62_A BMP-2, BMP-2A, bone morphogenetic protein 2; TGF-beta superfamily, ligand-receptor complex, hormone/growth factor complex; 1.85A {Homo sapiens} SCOP: g.17.1.2 PDB: 2goo_A* 1rew_A 3bmp_A 2qj9_B 1es7_A 2qja_A 2qjb_A 2h64_A 3bk3_A 1reu_A
Probab=100.00 E-value=2.7e-43 Score=274.17 Aligned_cols=102 Identities=33% Similarity=0.861 Sum_probs=91.9
Q ss_pred CCCeeeeeEEEEeccCCceeeeecCCceecceeecccCCCCCCCCCCCcchHHHHH--HHhcCCCCCCCCeeeeeeccce
Q psy2425 171 KGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEE--YRKMDRLSGLQPCCAPVKFSPM 248 (275)
Q Consensus 171 ~~~Ccr~~~~V~F~~lgw~~wIi~P~~~~a~~C~G~C~~~~~~~~~~~~~~h~~~~--~~~~~~~~~~~~CC~P~~~~~l 248 (275)
...|||++|||||+||||++|||||+||+||||.|+|+++... .++.++|++.| ++..++ .+++|||+|++|+||
T Consensus 11 ~~~C~r~~l~VdF~dlGW~~WIiaP~gy~a~yC~G~C~~p~~~--~~~~tnHaivq~l~~~~~~-~~~~pCCvPt~l~~i 87 (114)
T 2h62_A 11 KSSCKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLAD--HLNSTNHAIVQTLVNSVNS-KIPKACCVPTELSAI 87 (114)
T ss_dssp CCBSEEECCEEEHHHHTCTTTEEECSEEECCEEECBCCSSCCT--TSEECHHHHHHHHHHHHCT-TSCCCCEEEEEEEEE
T ss_pred CCCceeEEEEEEeeecCCcccEEcCCceEeEeeeeECCCCccc--ccCCchHHHHHHHHHhcCC-CCCCCcccceeeccE
Confidence 3689999999999999999999999999999999999987653 45788999876 455565 588999999999999
Q ss_pred eEEEEcCCCcEEEEEcCCeEEecccCC
Q psy2425 249 SLIYFGPDSNIIKRDLPKMVVDECGCP 275 (275)
Q Consensus 249 ~~ly~~~~~~i~~~~~~~m~v~~CgC~ 275 (275)
+|||+|++++|++++|+||+|++|||+
T Consensus 88 s~ly~d~~~~v~~~~~~~Mvv~~CgC~ 114 (114)
T 2h62_A 88 SMLYLDENEKVVLKNYQDMVVEGCGCR 114 (114)
T ss_dssp EEEEECTTSCEEEEEEEEEEEEEEEEC
T ss_pred EEEEEeCCCCEEEEEcCCeEEecccCC
Confidence 999999999999999999999999996
No 5
>2r52_A BMP-6, bone morphogenetic protein 6; TGF-beta ligand, chondrogenesis, cleavage on PAIR of basic residues, cytokine, developmental protein; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.3e-42 Score=278.37 Aligned_cols=103 Identities=45% Similarity=0.939 Sum_probs=94.2
Q ss_pred CCCeeeeeEEEEeccCCceeeeecCCceecceeecccCCCCCCCCCCCcchHHHHH--HHhcCCCCCCCCeeeeeeccce
Q psy2425 171 KGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEE--YRKMDRLSGLQPCCAPVKFSPM 248 (275)
Q Consensus 171 ~~~Ccr~~~~V~F~~lgw~~wIi~P~~~~a~~C~G~C~~~~~~~~~~~~~~h~~~~--~~~~~~~~~~~~CC~P~~~~~l 248 (275)
...|||++|||||+||||+||||||+||+||||.|+|+++.. .+++.++|++.| ++.+++..+++|||+|++|+||
T Consensus 39 ~~~C~r~~l~VdF~dlGW~dWIiaP~gy~A~yC~G~C~~pl~--~~~~~tnHaivq~l~~~~~p~~~~~pCCvPt~l~~i 116 (143)
T 2r52_A 39 KTACRKHELYVSFQDLGWQDWIIAPKGYAANYCDGECSFPLN--AHMNATNHAIVQTLVHLMNPEYVPKPCCAPTKLNAI 116 (143)
T ss_dssp CCBSEEECCEEETTTTTCGGGEEECSEEECCEEESBCCSSCC--TTTTBCHHHHHHHHHHHTCTTTSCCCCEEEEEEEEE
T ss_pred CCCceEEEEEEEHhHCCCceeEEcCCceeeeeeeeECCCccc--cccCCCchHHHHHHHHhcCCCCCCCCCCcceeeccE
Confidence 467999999999999999999999999999999999998764 346788999876 5667777889999999999999
Q ss_pred eEEEEcCCCcEEEEEcCCeEEecccCC
Q psy2425 249 SLIYFGPDSNIIKRDLPKMVVDECGCP 275 (275)
Q Consensus 249 ~~ly~~~~~~i~~~~~~~m~v~~CgC~ 275 (275)
+|||+|++++|++++|+||+|++|||+
T Consensus 117 s~Ly~d~~~~v~~k~~~~Mvv~~CgC~ 143 (143)
T 2r52_A 117 SVLYFDDNSNVILKKYRNMVVRACGCH 143 (143)
T ss_dssp EEEEECTTCCEEEEEEEEEEEEEEEEC
T ss_pred EEEEEECCCCEEEEEcCCeEEeeccCC
Confidence 999999999999999999999999996
No 6
>3hh2_A Growth/differentiation factor 8; protein-protein complex, TB domain, cystine knot motif, TGF- fold, disulfide linked dimer, CLE PAIR of basic residues, cytokine; HET: CIT; 2.15A {Mus musculus} SCOP: g.17.1.0 PDB: 3sek_B*
Probab=100.00 E-value=4.8e-42 Score=265.07 Aligned_cols=107 Identities=39% Similarity=0.956 Sum_probs=93.6
Q ss_pred ccCCCCCCC-CCCeeeeeEEEEeccCCceeeeecCCceecceeecccCCCCCCCCCCCcchHHHHHHHhcCCCCCCCCee
Q psy2425 162 RALDCSATT-KGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEEYRKMDRLSGLQPCC 240 (275)
Q Consensus 162 ~~~~c~~~~-~~~Ccr~~~~V~F~~lgw~~wIi~P~~~~a~~C~G~C~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~CC 240 (275)
++++|++++ +..|||++|||||+|||| ||||||+||+||||.|+|+++.... ..|+|++ +.+++..+++|||
T Consensus 2 ~~~~C~~~~~~~~C~r~~l~V~F~dlGW-dWIiaP~~y~a~yC~G~C~~p~~~~---~~h~~l~---~~~~p~~~~~pCC 74 (109)
T 3hh2_A 2 FGLDCDEHSTESRCCRYPLTVDFEAFGW-DWIIAPKRYKANYCSGECEFVFLQK---YPHTHLV---HQANPRGSAGPCC 74 (109)
T ss_dssp CSCBCCTTCCCCBSEEECCEEEHHHHTC-TTEEECSEEECCEEECBCCTTTTCC---CHHHHHH---HHHCCTTCCCCCE
T ss_pred ccccCCCCCCCCCcEEEEEEEeHHHcCC-CeEeCCCcccceeecccCCCccccc---Cchhhhh---hhcCcccCCCceE
Confidence 678998875 468999999999999999 5999999999999999999875422 2455544 4566777899999
Q ss_pred eeeeccceeEEEEcCCCcEEEEEcCCeEEecccCC
Q psy2425 241 APVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGCP 275 (275)
Q Consensus 241 ~P~~~~~l~~ly~~~~~~i~~~~~~~m~v~~CgC~ 275 (275)
+|++|+||+|||+|++|+|++++|+||+|++|||+
T Consensus 75 vPt~l~~ls~ly~d~~~~v~~~~~~~Mvv~~CgCs 109 (109)
T 3hh2_A 75 TPTKMSPINMLYFNGKEQIIYGKIPAMVVDRCGCS 109 (109)
T ss_dssp EEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEEEC
T ss_pred eeeeeccEEEEEEeCCCCEEEEEcCCeEEeeeEeC
Confidence 99999999999999999999999999999999997
No 7
>1lxi_A Bone morphogenetic protein 7; cystine-knot growth factor, hormone-growth factor complex; HET: NAG; 2.00A {Homo sapiens} SCOP: g.17.1.2 PDB: 1lx5_A* 1bmp_A* 1m4u_L* 2qcw_A 2r53_A
Probab=100.00 E-value=3.7e-42 Score=276.13 Aligned_cols=103 Identities=42% Similarity=0.946 Sum_probs=93.8
Q ss_pred CCCeeeeeEEEEeccCCceeeeecCCceecceeecccCCCCCCCCCCCcchHHHHH--HHhcCCCCCCCCeeeeeeccce
Q psy2425 171 KGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEE--YRKMDRLSGLQPCCAPVKFSPM 248 (275)
Q Consensus 171 ~~~Ccr~~~~V~F~~lgw~~wIi~P~~~~a~~C~G~C~~~~~~~~~~~~~~h~~~~--~~~~~~~~~~~~CC~P~~~~~l 248 (275)
...|||++|||||+||||++|||||+||+||||.|+|+++.. .+++.++|++.| ++.+++..+++|||+|++|+||
T Consensus 35 ~~~C~r~~l~VdF~dlGW~~WIiaP~gy~a~yC~G~C~~pl~--~~~~~tnHaivq~l~~~~~p~~~~~pCCvPt~l~~i 112 (139)
T 1lxi_A 35 RQACKKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLN--SYMNATNHAIVQTLVHFINPETVPKPCCAPTQLNAI 112 (139)
T ss_dssp -CBSEEECCEEEHHHHTCTTTEEECSEEECCEEESBCCSSCC--GGGCCCHHHHHHHHHHHHCTTTCCCCCEEEEEEEEE
T ss_pred CCcceeEEEEEEhhhCCCceeEECCCceeeeeeeeECCCCcc--cccCCCchHHHHHHHHhcCCCCCCCCCCcCeeeccE
Confidence 468999999999999999999999999999999999998765 346788999876 5667777889999999999999
Q ss_pred eEEEEcCCCcEEEEEcCCeEEecccCC
Q psy2425 249 SLIYFGPDSNIIKRDLPKMVVDECGCP 275 (275)
Q Consensus 249 ~~ly~~~~~~i~~~~~~~m~v~~CgC~ 275 (275)
+|||+|++++|++++|+||+|++|||+
T Consensus 113 s~ly~d~~~~v~~~~~~~Mvv~~CgC~ 139 (139)
T 1lxi_A 113 SVLYFDDSSNVILKKYRNMVVRACGCH 139 (139)
T ss_dssp EEEEECTTSCEEEEEEEEEEEEEEEEC
T ss_pred EEEEEeCCCCEEEEEcCCeEEEecccC
Confidence 999999999999999999999999996
No 8
>2qcq_A Bone morphogenetic protein 3; BMP, TGF-beta, signaling protein; 2.21A {Homo sapiens}
Probab=100.00 E-value=7.1e-42 Score=264.67 Aligned_cols=103 Identities=29% Similarity=0.753 Sum_probs=90.4
Q ss_pred CCCeeeeeEEEEeccCCceeeeecCCceecceeecccCCCCCCCCCCCcchHHHHH--HHhcC-CCCCCCCeeeeeeccc
Q psy2425 171 KGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEE--YRKMD-RLSGLQPCCAPVKFSP 247 (275)
Q Consensus 171 ~~~Ccr~~~~V~F~~lgw~~wIi~P~~~~a~~C~G~C~~~~~~~~~~~~~~h~~~~--~~~~~-~~~~~~~CC~P~~~~~ 247 (275)
.+.|||++|||||+||||++|||||+||+||||.|+|+++.. ..++.++|++.| ++..+ +..+++|||+|++|+|
T Consensus 5 ~~~C~r~~l~VdF~dlGW~~WIiaP~~y~a~yC~G~C~~pl~--~~~~~tnHa~vq~l~~~~~~~~~~~~pCCvPt~l~~ 82 (110)
T 2qcq_A 5 PRNCARRYLKVDFADIGWSEWIISPKSFDAYYCSGACQFPMP--KSLKPSNHATIQSIVRAVGVVPGIPEPCCVPEKMSS 82 (110)
T ss_dssp CSBSEEECCEEETTTTTCTTTEEECSEEECCEEECBCCSSCC--GGGCCCHHHHHHHHHHHTCCSTTCCCCCEEECSEEE
T ss_pred CCCcEEEEEEEEeeccCCcceEECCCceEeEEeEeECCCCcc--cccCCChhHHHHHHHHhccCCCCCCCCcCCCeeEcc
Confidence 357999999999999999999999999999999999998764 235678898876 44443 2357899999999999
Q ss_pred eeEEEEcCCCcEEEEEcCCeEEecccCC
Q psy2425 248 MSLIYFGPDSNIIKRDLPKMVVDECGCP 275 (275)
Q Consensus 248 l~~ly~~~~~~i~~~~~~~m~v~~CgC~ 275 (275)
|+|||+|++|++++++|+||+|++|||+
T Consensus 83 ls~ly~d~~~~v~~~~~~~Mvv~~CgC~ 110 (110)
T 2qcq_A 83 LSILFFDENKNVVLKVYPNMTVESCACR 110 (110)
T ss_dssp EEEEEECTTCCEEEEEEEEEEECCEEEC
T ss_pred EEEEEEeCCCCEEEEEcCCcEEeecccC
Confidence 9999999999999999999999999996
No 9
>2arp_A Inhibin beta A chain; cystine knot, disulfide rich, EGF domain, kazal domain, PROT complex, hormone-growth factor complex; HET: 1PG; 2.00A {Homo sapiens} SCOP: g.17.1.2 PDB: 1nyu_B 1nys_B 1s4y_B* 2arv_A* 2b0u_A 2p6a_A 3b4v_A*
Probab=100.00 E-value=9.7e-42 Score=266.58 Aligned_cols=111 Identities=47% Similarity=1.071 Sum_probs=87.9
Q ss_pred CCCCCCCCCCeeeeeEEEEeccCCceeeeecCCceecceeecccCCCCCCC--CCCCcchHHHHHH--HhcCCCCCCCCe
Q psy2425 164 LDCSATTKGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPD--MYYNHYSHVIEEY--RKMDRLSGLQPC 239 (275)
Q Consensus 164 ~~c~~~~~~~Ccr~~~~V~F~~lgw~~wIi~P~~~~a~~C~G~C~~~~~~~--~~~~~~~h~~~~~--~~~~~~~~~~~C 239 (275)
++|+++ ++.|||++|||||+||||++|||||++|+||||.|+|+++.... +....+.|++.++ +..+|..+++||
T Consensus 2 ~~c~~~-~~~C~r~~l~VdF~dlGW~~WIiaP~~y~a~yC~G~C~~p~~~~~~tn~a~~~~~i~~~~~~~~~p~~~~~pC 80 (116)
T 2arp_A 2 LECDGK-VNICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHIAGTSGSSLSFHSTVINHYRMRGHSPFANLKSC 80 (116)
T ss_dssp CSCCC---CCSEEECCEEEHHHHTCTTTEEECSEEECCEEESCCCC---------CCHHHHHHHHTTSTTCSSCCCCCCC
T ss_pred CCCCCC-CCCceeEEEEEEhhhcCCcccEECCCceEeEEEeeeCCCCccccCCcchHHHHHHHHhhhccccCCCCCCCCc
Confidence 567754 37999999999999999999999999999999999999876521 1111233444442 344556788999
Q ss_pred eeeeeccceeEEEEcCCCcEEEEEcCCeEEecccCC
Q psy2425 240 CAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGCP 275 (275)
Q Consensus 240 C~P~~~~~l~~ly~~~~~~i~~~~~~~m~v~~CgC~ 275 (275)
|+|++|+||+|||+|+++++++++|+||+|++|||+
T Consensus 81 CvPt~l~~ls~ly~d~~~~v~~~~~~~Mvv~~CgC~ 116 (116)
T 2arp_A 81 CVPTKLRPMSMLYYDDGQNIIKKDIQNMIVEECGCS 116 (116)
T ss_dssp EEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEEEC
T ss_pred cccccCccEEEEEEeCCCCEEEEEcCCeEEeecccC
Confidence 999999999999999999999999999999999996
No 10
>2tgi_A Transforming growth factor ,beta 2; 1.80A {Homo sapiens} SCOP: g.17.1.2 PDB: 1tfg_A 1tgj_A 1ktz_A 1tgk_A 2pjy_A 3eo1_C 1kla_A 1klc_A 1kld_A 3kfd_A
Probab=100.00 E-value=3.3e-40 Score=255.96 Aligned_cols=104 Identities=30% Similarity=0.801 Sum_probs=90.2
Q ss_pred CCCCCCCCCeeeeeEEEEec-cCCceeeeecCCceecceeecccCCCCCCCCCCCcchHHHHH--HHhcCCCCCCCCeee
Q psy2425 165 DCSATTKGQCCKQKFYVSFK-QLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEE--YRKMDRLSGLQPCCA 241 (275)
Q Consensus 165 ~c~~~~~~~Ccr~~~~V~F~-~lgw~~wIi~P~~~~a~~C~G~C~~~~~~~~~~~~~~h~~~~--~~~~~~~~~~~~CC~ 241 (275)
+|+...+..|||++|||||+ ||||+ |||||+||+||||.|+|+++..+ .++|++.| ++.+++..+++|||+
T Consensus 6 ~C~~~~~~~C~r~~l~VdF~~dlGW~-WIiaP~~y~A~yC~G~C~~p~~~-----~tnHa~vq~l~~~~~p~~~~~pCCv 79 (112)
T 2tgi_A 6 YCFRNVQDNCCLRPLYIDFKRDLGWK-WIHEPKGYNANFCAGACPYLWSS-----DTQHSRVLSLYNTINPEASASPCCV 79 (112)
T ss_dssp HHTTCCCSBSEEECCEEEHHHHHCCT-TEEECSEEECCEEECBCCTTSSB-----CSHHHHHHHHHHHHCGGGCCCCCEE
T ss_pred cccCCCCCCceeEEEEEEhhhhcCCc-eEcCcCcEEEEEeeeECcCCccc-----cchhhHHHHHHHhcCCCCCCCCcee
Confidence 46655567999999999997 99995 99999999999999999987643 45777765 566677778899999
Q ss_pred eeeccceeEEEEcCCCcEEEEEcCCeEEecccCC
Q psy2425 242 PVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGCP 275 (275)
Q Consensus 242 P~~~~~l~~ly~~~~~~i~~~~~~~m~v~~CgC~ 275 (275)
|++|+||+|||+|++ ++++++|+||+|++|||+
T Consensus 80 Pt~l~~ls~ly~d~~-~~~~~~~~~Mvv~~CgC~ 112 (112)
T 2tgi_A 80 SQDLEPLTILYYIGK-TPKIEQLSNMIVKSCKCS 112 (112)
T ss_dssp ECSEEEEEEEEEETT-EEEEEEEEEEEECCEEEC
T ss_pred ceeeccEEEEEEeCC-ceEEEEcCCcEEeecccC
Confidence 999999999999976 678899999999999997
No 11
>2ask_A Artemin; glial cell derived family ligand, neurotrphoic growth factor, sulfates, hormone/growth factor complex; 1.55A {Homo sapiens} PDB: 2gyz_A 2gyr_A 2gh0_C*
Probab=99.97 E-value=1.4e-31 Score=206.25 Aligned_cols=91 Identities=21% Similarity=0.449 Sum_probs=75.3
Q ss_pred CCCeeeeeEEEEeccCCceeeeecCCceecceeecccCCCCCCCCCCCcchHHHH-H--HHhc--CC----CCCCCCeee
Q psy2425 171 KGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIE-E--YRKM--DR----LSGLQPCCA 241 (275)
Q Consensus 171 ~~~Ccr~~~~V~F~~lgw~~wIi~P~~~~a~~C~G~C~~~~~~~~~~~~~~h~~~-~--~~~~--~~----~~~~~~CC~ 241 (275)
.+.||+++|+|||+||||+ | ++|++|+||||+|+|+++ .++|++. + ++.. .+ ..+++|||+
T Consensus 13 ~~~C~l~~l~V~f~dLGw~-~-~ap~~y~a~yC~G~C~~~--------~tnHa~vl~~l~~~~~~~~p~~~~~~~~PCCv 82 (113)
T 2ask_A 13 ARGCRLRSQLVPVRALGLG-H-RSDELVRFRFCSGSCRRA--------RSPHDLSLASLLGAGALRPPPGSRPVSQPCCR 82 (113)
T ss_dssp CCBSEEEEEEEEGGGGSSS-C-CCCCEEEEEEEECBCGGG--------CCHHHHHHHHHHHHTCSCCCSSSCCCSSCEEE
T ss_pred CCCceeEEEEEEHHHcCCC-c-cCcCeeeeeeeeeeCCCC--------CCcHHHHHHHHHHhccccCcccCCCCCCCCcc
Confidence 4689999999999999998 6 569999999999999863 3467754 2 2322 22 568899999
Q ss_pred eeeccceeEEEEcCCCcEEEEEcCCeEEecccCC
Q psy2425 242 PVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGCP 275 (275)
Q Consensus 242 P~~~~~l~~ly~~~~~~i~~~~~~~m~v~~CgC~ 275 (275)
||+|++|+|| | +++++++|+||+|++|||.
T Consensus 83 Pt~~~~iS~L--d--~~v~~k~~~~Mva~~CgC~ 112 (113)
T 2ask_A 83 PTRYEAVSFM--D--VNSTWRTVDRLSATACGCL 112 (113)
T ss_dssp EEEEEEEEEE--C--TTSCEEEEEEEEEEEEEEE
T ss_pred CceecceEEE--c--CceeeeecCCcEEeecccC
Confidence 9999999998 4 4688999999999999994
No 12
>1agq_A GDNF, glial cell-derived neurotrophic factor; growth factor, cystine knot; 1.90A {Rattus norvegicus} SCOP: g.17.1.2 PDB: 3fub_B* 2v5e_B*
Probab=99.96 E-value=5.4e-30 Score=201.49 Aligned_cols=91 Identities=22% Similarity=0.468 Sum_probs=73.8
Q ss_pred CCCeeeeeEEEEeccCCceeeeecCCceecceeecccCCCCCCCCCCCcchHHHH-H-H-H--hcCCCCCCCCeeeeeec
Q psy2425 171 KGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIE-E-Y-R--KMDRLSGLQPCCAPVKF 245 (275)
Q Consensus 171 ~~~Ccr~~~~V~F~~lgw~~wIi~P~~~~a~~C~G~C~~~~~~~~~~~~~~h~~~-~-~-~--~~~~~~~~~~CC~P~~~ 245 (275)
.+.|++++|||||+||||+ | ++|++|+||||.|+|+++ .+||++. + + + .++|..+++|||+||+|
T Consensus 39 ~~~C~l~~L~V~f~dLGwg-~-~spe~y~a~yC~G~C~~~--------~TNHAivL~~L~~~~~l~p~~vp~PCCvPt~~ 108 (135)
T 1agq_A 39 NRGCVLTAIHLNVTDLGLG-Y-ETKEELIFRYCSGSCEAA--------ETMYDKILKNLSRSRRLTSDKVGQACCRPVAF 108 (135)
T ss_dssp CTTSEEEEEEEEGGGGCSS-C-CCCCEEEEEEEESCCCSC--------CSHHHHHHHHHHHHC------CCCCCEEEEEE
T ss_pred CCCceeEEEEEEHHHhCCC-c-cCcCeeEeeeeeeeCCCC--------CccHHHHHHHHHhhcccCCCCCCCCCccCeec
Confidence 4789999999999999998 4 799999999999999873 4578876 2 2 2 34677889999999999
Q ss_pred c-ceeEEEEcCCCcEEEEEcCCeEEecccCC
Q psy2425 246 S-PMSLIYFGPDSNIIKRDLPKMVVDECGCP 275 (275)
Q Consensus 246 ~-~l~~ly~~~~~~i~~~~~~~m~v~~CgC~ 275 (275)
+ +|+|| | +++++++|+||+|++|||.
T Consensus 109 s~~IS~L--D--~~~v~k~~~~Mva~~CGC~ 135 (135)
T 1agq_A 109 DDDLSFL--D--DSLVYHILRKHSAKRCGCI 135 (135)
T ss_dssp CCCEEEE--C--TTSCEEEECSCSEEEEEEC
T ss_pred CCCceEE--c--CCcceeecCcceeeccccC
Confidence 8 99999 4 4567899999999999994
No 13
>2k8p_A Sclerostin; WNT signalling pathway, bone formation, alternative splicing, glycoprotein, secreted, signaling protein; NMR {Homo sapiens} PDB: 2kd3_A
Probab=94.33 E-value=0.084 Score=42.80 Aligned_cols=90 Identities=20% Similarity=0.429 Sum_probs=54.5
Q ss_pred CCeeeeeEEEEeccCCceeeeecCCceecceeecccC-CCCCCCCCCCcchHHHHHHHhcCCCCCCCCeeeeeeccceeE
Q psy2425 172 GQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCG-VRRTPDMYYNHYSHVIEEYRKMDRLSGLQPCCAPVKFSPMSL 250 (275)
Q Consensus 172 ~~Ccr~~~~V~F~~lgw~~wIi~P~~~~a~~C~G~C~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~CC~P~~~~~l~~ 250 (275)
..+|+...+=++-.-|- -.+=+-+.--.|.|.|. ....|.. ... . +-. ..+...-||+|.++.-..|
T Consensus 53 ~~~Crg~r~r~Yisdg~---CrS~kpVk~lvCsG~C~p~~~lpn~-i~~-~------K~w-r~s~~~~cCvp~rsRrrRI 120 (189)
T 2k8p_A 53 EYSCRELHFTRYVTDGP---CRSAKPVTELVCSGQCGPARLLPNA-IGR-G------KWW-RPSGPDFRCIPDRYRAQRV 120 (189)
T ss_dssp CSSSCEEEEEECCCCSS---CEESSCEEEEEECCCCCCCCCCSSC-CCS-S------CCC-SCCCCCCCCEECCEEEEEE
T ss_pred ccccccceeeEEEecCc---eeEccccccceEeccccCccccccc-ccc-c------ccc-ccCCCcccccCCceeeEEE
Confidence 56777655444433332 34445566678999994 2222211 000 0 001 1123357999999999888
Q ss_pred EEEcCCCcE-EEEEcCCeEEecccCC
Q psy2425 251 IYFGPDSNI-IKRDLPKMVVDECGCP 275 (275)
Q Consensus 251 ly~~~~~~i-~~~~~~~m~v~~CgC~ 275 (275)
-+.=.||.. ...++ -+|.+|+|.
T Consensus 121 qm~C~DGtt~rt~ki--~vV~sCkCk 144 (189)
T 2k8p_A 121 QLLCPGGEAPRARKV--RLVASCKCK 144 (189)
T ss_dssp EEECCTTSCCEEEEE--EEECCEECC
T ss_pred EEEcCCCCeeeEEEE--EEEEeeccc
Confidence 888777877 55555 789999994
No 14
>2c7w_A Vascular endothelial growth factor B precursor; angiogenesis, cysteine-knot motif, tyrosine kinase, ischemia, mitogen, glycoprotein; 2.48A {Homo sapiens} PDB: 2xac_A
Probab=58.38 E-value=35 Score=24.73 Aligned_cols=56 Identities=18% Similarity=0.291 Sum_probs=40.6
Q ss_pred CCeeeeeEEEEec-cCCce-eeeecCCceecceeecccCCCCCCCCCCCcchHHHHHHHhcCCCCCCCCeeeeeecccee
Q psy2425 172 GQCCKQKFYVSFK-QLGWE-DWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEEYRKMDRLSGLQPCCAPVKFSPMS 249 (275)
Q Consensus 172 ~~Ccr~~~~V~F~-~lgw~-~wIi~P~~~~a~~C~G~C~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~CC~P~~~~~l~ 249 (275)
..|.-++..|+.. ++.-+ +-|..|.=.....|.|=|+.. .-=|+|++...++
T Consensus 15 a~C~Pr~~~V~i~~e~p~~~~~~y~P~Cv~v~RCgGCC~~e--------------------------~l~C~Pt~t~~v~ 68 (99)
T 2c7w_A 15 ATCQPREVVVPLTVELMGTVAKQLVPSCVTVQRCGGCCPDD--------------------------GLECVPTGQHQVR 68 (99)
T ss_dssp HBSEEEEEEEECCTTCTTCCCSEEESSEEEEEEEESBCSSS--------------------------SCEEEEEEEEEEE
T ss_pred CCceeeeEEEEchhhcCCCCCceEECCeEEEccccCcCCCC--------------------------CcEEEccEEEEEE
Confidence 4588888888885 33322 468899999999999999631 0139999999665
Q ss_pred EEEE
Q psy2425 250 LIYF 253 (275)
Q Consensus 250 ~ly~ 253 (275)
|-.+
T Consensus 69 ~~v~ 72 (99)
T 2c7w_A 69 MQIL 72 (99)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5443
No 15
>1fzv_A PLGF-1, placenta growth factor; cysteine-knot family, angiogenesis, hormone/growth factor complex; 2.00A {Homo sapiens} SCOP: g.17.1.1 PDB: 1rv6_V*
Probab=48.61 E-value=47 Score=25.42 Aligned_cols=56 Identities=21% Similarity=0.399 Sum_probs=43.0
Q ss_pred CCeeeeeEEEEec-cCCce-eeeecCCceecceeecccCCCCCCCCCCCcchHHHHHHHhcCCCCCCCCeeeeeecccee
Q psy2425 172 GQCCKQKFYVSFK-QLGWE-DWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEEYRKMDRLSGLQPCCAPVKFSPMS 249 (275)
Q Consensus 172 ~~Ccr~~~~V~F~-~lgw~-~wIi~P~~~~a~~C~G~C~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~CC~P~~~~~l~ 249 (275)
..|.-++..|+.. ++.-+ +.|..|.=.....|.|=|+... -=|+|++...+.
T Consensus 33 s~C~Pr~~~V~i~~E~p~~~~~~y~P~Cv~v~RCgGCC~~e~--------------------------l~C~Pt~t~~v~ 86 (132)
T 1fzv_A 33 SYCRALERLVDVVSEYPSEVEHMFSPSCVSLLRCTGCCGDEN--------------------------LHCVPVETANVT 86 (132)
T ss_dssp HBSEEEEEEEETGGGSSSCCCSCEESSEEEEEEEECBCSSTT--------------------------EEEEEEEEEEEE
T ss_pred cccccccEEEEcchhcCCCCCceEecCcEEeccccccCCCCC--------------------------cEEecceEEEEE
Confidence 4688888999985 45543 5889999999999999885310 139999998887
Q ss_pred EEEE
Q psy2425 250 LIYF 253 (275)
Q Consensus 250 ~ly~ 253 (275)
|-.+
T Consensus 87 ~~v~ 90 (132)
T 1fzv_A 87 MQLL 90 (132)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7665
No 16
>3mjk_A Platelet-derived growth factor subunit A; cystine-knot, hormone; 2.40A {Homo sapiens}
Probab=42.10 E-value=69 Score=25.57 Aligned_cols=39 Identities=15% Similarity=0.342 Sum_probs=31.1
Q ss_pred CCCCeeeeeEEEEe-ccCC--ce-eeeecCCceecceeecccC
Q psy2425 170 TKGQCCKQKFYVSF-KQLG--WE-DWIIAPSGYYANYCRGDCG 208 (275)
Q Consensus 170 ~~~~Ccr~~~~V~F-~~lg--w~-~wIi~P~~~~a~~C~G~C~ 208 (275)
....|.-++..|+. ++++ -+ ++|+.|.=.....|.|=|+
T Consensus 72 ~~a~C~PRe~~VeI~~E~pd~t~~~f~~~PsCV~V~RCgGCCn 114 (169)
T 3mjk_A 72 VPAVCKTRTVIYEIPRSQVDPTSANFLIWPPCVEVKRCTGCCN 114 (169)
T ss_dssp CBCCSEEEEEEEECCGGGTCSSCCCCEEESSEEEEEEEECCCS
T ss_pred hccCcccccEEeechhhcCCCCCceeEEcCCcEEeccccccCC
Confidence 34689999999988 4553 12 5889999999999999996
No 17
>2gnn_A Vascular endothelial growth factor homolog; VEGF, S-SAD,, hormone-growth factor complex; HET: NAG; 2.30A {Orf virus}
Probab=33.96 E-value=94 Score=23.52 Aligned_cols=57 Identities=16% Similarity=0.250 Sum_probs=43.1
Q ss_pred CCeeeeeEEEEec-cCCce-eeeecCCceecceeecccCCCCCCCCCCCcchHHHHHHHhcCCCCCCCCeeeeeecccee
Q psy2425 172 GQCCKQKFYVSFK-QLGWE-DWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEEYRKMDRLSGLQPCCAPVKFSPMS 249 (275)
Q Consensus 172 ~~Ccr~~~~V~F~-~lgw~-~wIi~P~~~~a~~C~G~C~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~CC~P~~~~~l~ 249 (275)
..|.-++..|+.. ++.-+ +.|..|.=.....|.|=|+... -=|+|++...+.
T Consensus 20 a~C~PR~~~V~I~~E~p~~~~~~y~P~Cv~V~RCgGCC~de~--------------------------l~C~Pt~t~~v~ 73 (127)
T 2gnn_A 20 SECKPRPIVVPVSETHPELTSQRFNPPCVTLMRCGGCCNDES--------------------------LECVPTEEVNVT 73 (127)
T ss_dssp HSSEEEEEEEEGGGTCTTCTTSCCBSSEEEEEEEESCBSSTT--------------------------EEEEEEEEEEEE
T ss_pred CccccccEEEEeehhcCCCCCceEecCcEEEecccCcCCCCC--------------------------cEEECCeEEEEE
Confidence 4688888889885 44333 5788999999999999885310 139999999988
Q ss_pred EEEEc
Q psy2425 250 LIYFG 254 (275)
Q Consensus 250 ~ly~~ 254 (275)
|-.+-
T Consensus 74 ~~V~k 78 (127)
T 2gnn_A 74 MELLG 78 (127)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 77653
No 18
>2xv7_A Vascular endothelial growth factor D; angiogenesis, lymphangiogenesis, hormone; HET: NAG BMA MAN; 2.90A {Homo sapiens}
Probab=32.72 E-value=76 Score=23.54 Aligned_cols=56 Identities=23% Similarity=0.344 Sum_probs=43.1
Q ss_pred CCeeeeeEEEEec-cCCce-eeeecCCceecceeecccCCCCCCCCCCCcchHHHHHHHhcCCCCCCCCeeeeeecccee
Q psy2425 172 GQCCKQKFYVSFK-QLGWE-DWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEEYRKMDRLSGLQPCCAPVKFSPMS 249 (275)
Q Consensus 172 ~~Ccr~~~~V~F~-~lgw~-~wIi~P~~~~a~~C~G~C~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~CC~P~~~~~l~ 249 (275)
..|.-++..|+.. ++.-+ +-|..|.=-....|.|=|+... -=|+|++...++
T Consensus 20 a~C~Pr~~~V~i~~e~p~~~~~~~~P~Cv~v~RCgGCC~de~--------------------------l~C~Pt~t~~Vt 73 (112)
T 2xv7_A 20 TQCSPRETAVEVASELGKSTNTFFKPPCVNVFRCGGCCNEES--------------------------LICMNTSTSYIS 73 (112)
T ss_dssp TBSEEEEEEEEGGGGSCCGGGBCCBSSEEEEEEEECBCSSTT--------------------------CEEEEEEEEEEE
T ss_pred CCcccccEEEechhhcCCCCCcEEecCceEEccccCCCCCCC--------------------------CeEEcccceEEE
Confidence 5688888999985 45433 5788999999999999775310 239999998888
Q ss_pred EEEE
Q psy2425 250 LIYF 253 (275)
Q Consensus 250 ~ly~ 253 (275)
|-++
T Consensus 74 ~~v~ 77 (112)
T 2xv7_A 74 KQLF 77 (112)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8776
No 19
>2vwe_A Vascular endothelial growth factor B; immune system, glycoprotein, cysteine-knot, growth factor, mitogen, secreted, angiogenesis, neutralizing antibody; 3.40A {Homo sapiens}
Probab=32.14 E-value=1.1e+02 Score=24.17 Aligned_cols=57 Identities=18% Similarity=0.247 Sum_probs=43.0
Q ss_pred CCeeeeeEEEEecc-CCce-eeeecCCceecceeecccCCCCCCCCCCCcchHHHHHHHhcCCCCCCCCeeeeeecccee
Q psy2425 172 GQCCKQKFYVSFKQ-LGWE-DWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEEYRKMDRLSGLQPCCAPVKFSPMS 249 (275)
Q Consensus 172 ~~Ccr~~~~V~F~~-lgw~-~wIi~P~~~~a~~C~G~C~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~CC~P~~~~~l~ 249 (275)
..|.-++..|+..+ +.-+ +.|..|.=.....|.|-|.... -=|+|++...++
T Consensus 24 a~C~Pr~~~V~i~~e~p~~~~~~~~P~Cv~v~RCgGCC~~~~--------------------------l~C~Pt~t~~v~ 77 (167)
T 2vwe_A 24 ATCQPREVVVPLTVELMGTVAKQLVPSCVTVQRCGGCCPDDG--------------------------LECVPTGQHQVR 77 (167)
T ss_dssp HSSEEEEEEEECCTTTSCSSCSSEESSEEEEEEEESCCSSTT--------------------------EEEEEEEEEEEE
T ss_pred CcceeccEEEECchhcCCCCceEEecCceEeccccccCCCCC--------------------------ceEECCeEEEEE
Confidence 46888889999863 2222 5789999999999999996310 139999999888
Q ss_pred EEEEc
Q psy2425 250 LIYFG 254 (275)
Q Consensus 250 ~ly~~ 254 (275)
|-++.
T Consensus 78 ~~v~~ 82 (167)
T 2vwe_A 78 MQILM 82 (167)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87764
No 20
>2x1w_A Vascular endothelial growth factor C; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_E*
Probab=30.72 E-value=1e+02 Score=22.68 Aligned_cols=56 Identities=20% Similarity=0.349 Sum_probs=42.1
Q ss_pred CCeeeeeEEEEec-cCCce-eeeecCCceecceeecccCCCCCCCCCCCcchHHHHHHHhcCCCCCCCCeeeeeecccee
Q psy2425 172 GQCCKQKFYVSFK-QLGWE-DWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEEYRKMDRLSGLQPCCAPVKFSPMS 249 (275)
Q Consensus 172 ~~Ccr~~~~V~F~-~lgw~-~wIi~P~~~~a~~C~G~C~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~CC~P~~~~~l~ 249 (275)
..|.-++..|+.. ++.-+ +-+..|.=-....|.|=|+.. .-=|+|++...++
T Consensus 18 a~C~pr~~~V~i~~e~p~~~~~~~~P~Cv~v~RCgGCC~de--------------------------~l~C~Pt~t~nVt 71 (110)
T 2x1w_A 18 TQCMPREVAIDVGKEFGVATNTFFKPPCVSVYRCGGCCNSE--------------------------GLQCMNTSTSYLS 71 (110)
T ss_dssp HSSEEEEEEEETTTSSCCCTTCEEESSEEEEEEEECCCSSS--------------------------SCEEEEEEEEEEE
T ss_pred CCcccccEEEEchhhcCCCCCceEECCceEeccccCCCCCC--------------------------CCEEEcceeEEEE
Confidence 4688888999986 45543 468889999999999977531 0239999999877
Q ss_pred EEEE
Q psy2425 250 LIYF 253 (275)
Q Consensus 250 ~ly~ 253 (275)
|-.+
T Consensus 72 ~~v~ 75 (110)
T 2x1w_A 72 KTLF 75 (110)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6655
No 21
>4hqu_A Platelet-derived growth factor subunit B; growth factor, selex, aptamer, 5-modified deoxyuridine, HORM complex; HET: DUZ A2M UPE 18Q 18M; 2.20A {Homo sapiens} PDB: 1pdg_A* 4hqx_A*
Probab=30.55 E-value=76 Score=23.27 Aligned_cols=38 Identities=16% Similarity=0.366 Sum_probs=30.3
Q ss_pred CCCeeeeeEEEEe-ccCCce---eeeecCCceecceeecccC
Q psy2425 171 KGQCCKQKFYVSF-KQLGWE---DWIIAPSGYYANYCRGDCG 208 (275)
Q Consensus 171 ~~~Ccr~~~~V~F-~~lgw~---~wIi~P~~~~a~~C~G~C~ 208 (275)
...|.-++.-|+. ++++-. ++|..|.=.....|.|-|+
T Consensus 13 ~a~C~PRe~~V~I~~e~~~~t~~~~~~~P~Cv~v~RC~GCC~ 54 (109)
T 4hqu_A 13 IAECKTRTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCN 54 (109)
T ss_dssp CCCSEEEEEEEECCHHHHCSSCCCEEEECSEEEEEEEECCCS
T ss_pred cccceeccEEeecchhcCCCCCcceEEcCCcEEecCCeeeCC
Confidence 3578888888888 554431 4899999999999999996
No 22
>3mjg_A Platelet-derived growth factor subunit B; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=26.25 E-value=1.1e+02 Score=24.43 Aligned_cols=38 Identities=16% Similarity=0.366 Sum_probs=30.8
Q ss_pred CCCeeeeeEEEEe-ccCCce---eeeecCCceecceeecccC
Q psy2425 171 KGQCCKQKFYVSF-KQLGWE---DWIIAPSGYYANYCRGDCG 208 (275)
Q Consensus 171 ~~~Ccr~~~~V~F-~~lgw~---~wIi~P~~~~a~~C~G~C~ 208 (275)
...|.-+...|+. ++++-. +++..|.=....+|.|=|.
T Consensus 74 ~a~C~PRe~~V~I~~E~pd~t~~~~~~~PsCV~v~RCgGCC~ 115 (172)
T 3mjg_A 74 IAECKTRTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCN 115 (172)
T ss_dssp BCCSEEEEEEEECCGGGTCSSCBCCEEESSEEEEEEEECCCS
T ss_pred hcCCccCceEccchhHcCcccCCceEEccCcEeeccccccCC
Confidence 4689998888887 566543 3799999999999999885
No 23
>3v2a_A Vascular endothelial growth factor A; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens}
Probab=21.78 E-value=1.3e+02 Score=22.98 Aligned_cols=56 Identities=21% Similarity=0.363 Sum_probs=41.6
Q ss_pred CCeeeeeEEEEe-ccCCce-eeeecCCceecceeecccCCCCCCCCCCCcchHHHHHHHhcCCCCCCCCeeeeeecccee
Q psy2425 172 GQCCKQKFYVSF-KQLGWE-DWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEEYRKMDRLSGLQPCCAPVKFSPMS 249 (275)
Q Consensus 172 ~~Ccr~~~~V~F-~~lgw~-~wIi~P~~~~a~~C~G~C~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~CC~P~~~~~l~ 249 (275)
..|.-++..|+. .++.-+ +.|..|.=-....|.|=|+... -=|+|++...+.
T Consensus 37 s~C~PRe~lV~I~~E~p~~~~~~y~PsCV~V~RCgGCC~de~--------------------------l~C~Pt~t~~v~ 90 (134)
T 3v2a_A 37 SYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEG--------------------------LECVPTEESNIT 90 (134)
T ss_dssp TBSEEEEEEEEHHHHCTTCTTCEEESSEEEEEEEESBCSSTT--------------------------EEEEEEEEEEEE
T ss_pred ccccccceEeechhhcCCCCCcEEccCcEeccCCCccCCCCc--------------------------eeEeeeeeeeEE
Confidence 578888888888 344433 5889999999999999875310 139999988876
Q ss_pred EEEE
Q psy2425 250 LIYF 253 (275)
Q Consensus 250 ~ly~ 253 (275)
|-.+
T Consensus 91 ~qv~ 94 (134)
T 3v2a_A 91 MQIM 94 (134)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6554
No 24
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=20.81 E-value=53 Score=25.33 Aligned_cols=16 Identities=25% Similarity=0.762 Sum_probs=13.8
Q ss_pred cceeEEEEcCCCcEEE
Q psy2425 246 SPMSLIYFGPDSNIIK 261 (275)
Q Consensus 246 ~~l~~ly~~~~~~i~~ 261 (275)
-||.|+|+|.+|.|+.
T Consensus 82 ~PLDiiFid~dg~Vv~ 97 (140)
T 3m7a_A 82 IPLDIIFVGLDRRVMN 97 (140)
T ss_dssp SCEEEEEECTTSBEEE
T ss_pred cceEEEEECCCCeEEE
Confidence 3899999999998764
No 25
>1mkk_A Vascular endothelial growth factor A; cystine-knot growth factor, hormone/growth factor complex; 1.32A {Homo sapiens} SCOP: g.17.1.1 PDB: 2qr0_C 1flt_V 1kat_V 3qtk_A 1qty_V 1tzh_V 1tzi_V 1vpf_A 1bj1_V 2fjg_V 2fjh_V 2vpf_A 3bdy_V 1vpp_V 3s1k_V 1cz8_V 3s1b_V 1mkg_A 1mjv_A
Probab=20.48 E-value=2.4e+02 Score=20.04 Aligned_cols=56 Identities=20% Similarity=0.269 Sum_probs=40.7
Q ss_pred CCeeeeeEEEEec-cCCce-eeeecCCceecceeecccCCCCCCCCCCCcchHHHHHHHhcCCCCCCCCeeeeeecccee
Q psy2425 172 GQCCKQKFYVSFK-QLGWE-DWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEEYRKMDRLSGLQPCCAPVKFSPMS 249 (275)
Q Consensus 172 ~~Ccr~~~~V~F~-~lgw~-~wIi~P~~~~a~~C~G~C~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~CC~P~~~~~l~ 249 (275)
..|.-++..|+.. ++.-+ +.|..|.=-....|.|=|+... -=|+|++...++
T Consensus 12 a~C~Pr~~~V~i~~e~p~~~~~~~~P~Cv~v~RCgGCC~~e~--------------------------l~C~Pt~t~~v~ 65 (96)
T 1mkk_A 12 SYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCANDEG--------------------------LECVPTEESNIT 65 (96)
T ss_dssp HSSEEEEEEEEHHHHCGGGTTSEEESSEEEEEEEECCCCSSC--------------------------CEEEEEEEEEEE
T ss_pred CCcccccEEEEeehhcCCCCCcEEEcCcEEEecccCCCCCCC--------------------------cEEEcceEEEEE
Confidence 4588888888885 34432 5788999999999999885310 139999997766
Q ss_pred EEEE
Q psy2425 250 LIYF 253 (275)
Q Consensus 250 ~ly~ 253 (275)
|-.+
T Consensus 66 ~~v~ 69 (96)
T 1mkk_A 66 MQIM 69 (96)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
No 26
>3pjy_A Hypothetical signal peptide protein; DUF192 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.55A {Sinorhizobium meliloti}
Probab=20.34 E-value=55 Score=25.06 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=16.3
Q ss_pred cceeEEEEcCCCcEEEEEcCCeEE
Q psy2425 246 SPMSLIYFGPDSNIIKRDLPKMVV 269 (275)
Q Consensus 246 ~~l~~ly~~~~~~i~~~~~~~m~v 269 (275)
-||.|+|+|.+|.|+. ...+|..
T Consensus 68 ~PLDiiFld~~g~Vv~-i~~~~~P 90 (136)
T 3pjy_A 68 LPLDMLFIASDGTIRT-IHENAVP 90 (136)
T ss_dssp SCEEEEEECTTSBEEE-EEEEECT
T ss_pred cceEEEEECCCCEEEE-EEccCCC
Confidence 3899999999998763 2244443
Done!