RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2425
(275 letters)
>3evs_B Growth/differentiation factor 5; ligand-receptor complex,
cystin-knot ligand, three-finger to (receptor); 2.10A
{Homo sapiens} PDB: 1waq_A 3qb4_A 2bhk_A
Length = 117
Score = 148 bits (375), Expect = 2e-45
Identities = 37/116 (31%), Positives = 62/116 (53%)
Query: 159 VKRRALDCSATTKGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYN 218
+KR+ S K +C ++ +V+FK +GW+DWIIAP Y A +C G C +
Sbjct: 1 MKRQGKRPSKNLKARCSRKALHVNFKDMGWDDWIIAPLEYEAFHCEGLCEFPLRSHLEPT 60
Query: 219 HYSHVIEEYRKMDRLSGLQPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGC 274
+++ + MD S CC P + SP+S+++ +N++ + MVV+ CGC
Sbjct: 61 NHAVIQTLMNSMDPESTPPTCCVPTRLSPISILFIDSANNVVYKQYEDMVVESCGC 116
>3rjr_A Transforming growth factor beta-1; TGF beta, activation, integrin,
cytokine; HET: NAG; 3.05A {Sus scrofa}
Length = 363
Score = 154 bits (389), Expect = 8e-45
Identities = 53/239 (22%), Positives = 95/239 (39%), Gaps = 23/239 (9%)
Query: 55 LWVFRVSAQSNAT-YVSGKEFDEQTEMSASLTVSLSSSLGWNKFDLTSTVQDWYSSG--- 110
L + R+ + + K + ++ ++ S S W FD+T V+ W +
Sbjct: 128 LRLLRLKLKVEQHVELYQKYSQDSWRYLSNRLLAPSDSPEWLSFDVTGVVRQWLTRREAI 187
Query: 111 LQDRLRLLVDCSGCGDLIHPVLF-------QQTQKAEDSWRPFLVVYTDPTV------TR 157
RL C + +H + RPFL++ P +
Sbjct: 188 EGFRLSAHCSCDSKDNTLHVEINGFNSGRRGDLATIHGMNRPFLLLMATPLERAQHLHSS 247
Query: 158 RVKRRAL--DCSATTKGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDM 215
R +R C ++T+ CC ++ Y+ F++ WI P GY+AN+C G C + D
Sbjct: 248 RHRRALDTNYCFSSTEKNCCVRQLYIDFRKDLGWKWIHEPKGYHANFCLGPCPYIWSLD- 306
Query: 216 YYNHYSHVIEEYRKMDRLSGLQPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGC 274
+ S V+ Y + + + PCC P P+ ++Y+ ++ L M+V C C
Sbjct: 307 -TQY-SKVLALYNQHNPGASAAPCCVPQALEPLPIVYYVGRKPKVE-QLSNMIVRSCKC 362
>1lxi_A Bone morphogenetic protein 7; cystine-knot growth factor,
hormone-growth factor complex; HET: NAG; 2.00A {Homo
sapiens} SCOP: g.17.1.2 PDB: 1lx5_A* 1bmp_A* 1m4u_L*
2qcw_A 2r53_A
Length = 139
Score = 144 bits (364), Expect = 1e-43
Identities = 44/119 (36%), Positives = 66/119 (55%)
Query: 156 TRRVKRRALDCSATTKGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDM 215
R+ A + S+ + C K + YVSF+ LGW+DWIIAP GY A YC G+C M
Sbjct: 20 ALRMANVAENSSSDQRQACKKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYM 79
Query: 216 YYNHYSHVIEEYRKMDRLSGLQPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGC 274
+++ V ++ + +PCCAP + + +S++YF SN+I + MVV CGC
Sbjct: 80 NATNHAIVQTLVHFINPETVPKPCCAPTQLNAISVLYFDDSSNVILKKYRNMVVRACGC 138
>2r52_A BMP-6, bone morphogenetic protein 6; TGF-beta ligand,
chondrogenesis, cleavage on PAIR of basic residues,
cytokine, developmental protein; 2.50A {Homo sapiens}
Length = 143
Score = 143 bits (361), Expect = 3e-43
Identities = 50/139 (35%), Positives = 70/139 (50%)
Query: 136 TQKAEDSWRPFLVVYTDPTVTRRVKRRALDCSATTKGQCCKQKFYVSFKQLGWEDWIIAP 195
T + + T RV + S+ K C K + YVSF+ LGW+DWIIAP
Sbjct: 4 TSASSRRRQQSRNRSTQSQDVARVSSASDYNSSELKTACRKHELYVSFQDLGWQDWIIAP 63
Query: 196 SGYYANYCRGDCGVRRTPDMYYNHYSHVIEEYRKMDRLSGLQPCCAPVKFSPMSLIYFGP 255
GY ANYC G+C M +++ V M+ +PCCAP K + +S++YF
Sbjct: 64 KGYAANYCDGECSFPLNAHMNATNHAIVQTLVHLMNPEYVPKPCCAPTKLNAISVLYFDD 123
Query: 256 DSNIIKRDLPKMVVDECGC 274
+SN+I + MVV CGC
Sbjct: 124 NSNVILKKYRNMVVRACGC 142
>1zkz_A Growth/differentiation factor 2; glycoprotein, growth factor,
cytokine, hormone-growth factor; 2.33A {Homo sapiens}
Length = 110
Score = 139 bits (352), Expect = 3e-42
Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 167 SATTKGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEE 226
SA C K V+F+ +GW+ WIIAP Y A C+G C D+ ++ V
Sbjct: 1 SAGAGSHCQKTSLRVNFEDIGWDSWIIAPKEYEAYECKGGCFFPLADDVTPTKHAIVQTL 60
Query: 227 YRKMDRLSGLQPCCAPVKFSPMSLIYFGPDSN-IIKRDLPKMVVDECGC 274
+ CC P K SP+S++Y +K M V ECGC
Sbjct: 61 VHLKFPTKVGKACCVPTKLSPISVLYKDDMGVPTLKYHYEGMSVAECGC 109
>2qcq_A Bone morphogenetic protein 3; BMP, TGF-beta, signaling protein;
2.21A {Homo sapiens}
Length = 110
Score = 139 bits (351), Expect = 5e-42
Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Query: 169 TTKGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEEYR 228
C ++ V F +GW +WII+P + A YC G C + ++++ + R
Sbjct: 3 IEPRNCARRYLKVDFADIGWSEWIISPKSFDAYYCSGACQFPMPKSLKPSNHATIQSIVR 62
Query: 229 KMDRLSGL-QPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGC 274
+ + G+ +PCC P K S +S+++F + N++ + P M V+ C C
Sbjct: 63 AVGVVPGIPEPCCVPEKMSSLSILFFDENKNVVLKVYPNMTVESCAC 109
>2arp_A Inhibin beta A chain; cystine knot, disulfide rich, EGF domain,
kazal domain, PROT complex, hormone-growth factor
complex; HET: 1PG; 2.00A {Homo sapiens} SCOP: g.17.1.2
PDB: 1nyu_B 1nys_B 1s4y_B* 2arv_A* 2b0u_A 2p6a_A 3b4v_A*
Length = 116
Score = 133 bits (337), Expect = 7e-40
Identities = 53/116 (45%), Positives = 72/116 (62%), Gaps = 5/116 (4%)
Query: 163 ALDCSATTKGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCG--VRRTPDMYYNHY 220
L+C CCK++F+VSFK +GW DWIIAPSGY+ANYC G+C + T + +
Sbjct: 1 GLECDGK-VNICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHIAGTSGSSLSFH 59
Query: 221 SHVIEEYR--KMDRLSGLQPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGC 274
S VI YR + L+ CC P K PMS++Y+ NIIK+D+ M+V+ECGC
Sbjct: 60 STVINHYRMRGHSPFANLKSCCVPTKLRPMSMLYYDDGQNIIKKDIQNMIVEECGC 115
>2tgi_A Transforming growth factor ,beta 2; 1.80A {Homo sapiens} SCOP:
g.17.1.2 PDB: 1tfg_A 1tgj_A 1ktz_A 1tgk_A 2pjy_A 3eo1_C
1kla_A 1klc_A 1kld_A 3kfd_A
Length = 112
Score = 131 bits (331), Expect = 4e-39
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 7/115 (6%)
Query: 163 ALD---CSATTKGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNH 219
ALD C + CC + Y+ FK+ WI P GY AN+C G C
Sbjct: 1 ALDAAYCFRNVQDNCCLRPLYIDFKRDLGWKWIHEPKGYNANFCAGACPY---LWSSDTQ 57
Query: 220 YSHVIEEYRKMDRLSGLQPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGC 274
+S V+ Y ++ + PCC P++++Y+ + I++ L M+V C C
Sbjct: 58 HSRVLSLYNTINPEASASPCCVSQDLEPLTILYYIGKTPKIEQ-LSNMIVKSCKC 111
>3hh2_A Growth/differentiation factor 8; protein-protein complex, TB
domain, cystine knot motif, TGF- fold, disulfide linked
dimer, CLE PAIR of basic residues, cytokine; HET: CIT;
2.15A {Mus musculus} PDB: 3sek_B*
Length = 109
Score = 129 bits (325), Expect = 3e-38
Identities = 44/113 (38%), Positives = 58/113 (51%), Gaps = 8/113 (7%)
Query: 163 ALDCSA-TTKGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNHYS 221
LDC +T+ +CC+ V F+ GW DWIIAP Y ANYC G+C + H
Sbjct: 3 GLDCDEHSTESRCCRYPLTVDFEAFGW-DWIIAPKRYKANYCSGECEFVFLQKYPHTHLV 61
Query: 222 HVIEEYRKMDRLSGLQPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGC 274
H + + PCC P K SP++++YF II +P MVVD CGC
Sbjct: 62 H------QANPRGSAGPCCTPTKMSPINMLYFNGKEQIIYGKIPAMVVDRCGC 108
>2h62_A BMP-2, BMP-2A, bone morphogenetic protein 2; TGF-beta superfamily,
ligand-receptor complex, hormone/growth factor complex;
1.85A {Homo sapiens} SCOP: g.17.1.2 PDB: 2goo_A* 1rew_A
3bmp_A 2qj9_B 1es7_A 2qja_A 2qjb_A 2h64_A 3bk3_A 1reu_A
Length = 114
Score = 128 bits (324), Expect = 5e-38
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 157 RRVKRRALDCSATTKGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMY 216
+ ++R K C + YV F +GW DWI+AP GY+A YC G+C +
Sbjct: 4 HKQRKRL-------KSSCKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLN 56
Query: 217 YNHYSHVIEEYRKMDRLSGLQPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGC 274
+++ V ++ + CC P + S +S++Y + ++ ++ MVV+ CGC
Sbjct: 57 STNHAIVQTLVNSVN-SKIPKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCGC 113
>1agq_A GDNF, glial cell-derived neurotrophic factor; growth factor,
cystine knot; 1.90A {Rattus norvegicus} SCOP: g.17.1.2
PDB: 3fub_B* 2v5e_B*
Length = 135
Score = 73.6 bits (180), Expect = 1e-16
Identities = 24/118 (20%), Positives = 34/118 (28%), Gaps = 8/118 (6%)
Query: 157 RRVKRRALDCSATTKGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMY 216
+ + C +++ LG YC G C T MY
Sbjct: 25 ENSRGKGRRGQRGKNRGCVLTAIHLNVTDLGLGYE--TKEELIFRYCSGSCEAAET--MY 80
Query: 217 YNHYSHVIEEYRKMDRLSGLQPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGC 274
++ R G Q CC PV F D +++ L K CGC
Sbjct: 81 DKILKNLSRSRRLTSDKVG-QACCRPVAFDDDLSFL---DDSLVYHILRKHSAKRCGC 134
>2ask_A Artemin; glial cell derived family ligand, neurotrphoic growth
factor, sulfates, hormone/growth factor complex; 1.55A
{Homo sapiens} PDB: 2gyz_A 2gyr_A 2gh0_C*
Length = 113
Score = 67.3 bits (164), Expect = 2e-14
Identities = 23/115 (20%), Positives = 36/115 (31%), Gaps = 7/115 (6%)
Query: 161 RRALDCSATTKGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTP-DMYYNH 219
A C + V + LG + +C G C R+P D+
Sbjct: 3 GPGSRARAAGARGCRLRSQLVPVRALGLGHRSDELVRFR--FCSGSCRRARSPHDLSLAS 60
Query: 220 YSHVIEEYRKMDRLSGLQPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGC 274
QPCC P ++ +S + D N R + ++ CGC
Sbjct: 61 LLGAGALRPPPGSRPVSQPCCRPTRYEAVSFM----DVNSTWRTVDRLSATACGC 111
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.51
Identities = 17/114 (14%), Positives = 35/114 (30%), Gaps = 27/114 (23%)
Query: 39 PHTLRPIYQKSDRNVTLWVFRVSAQSNATYVSGKEFDEQTEMSASLTVSLS----SSLGW 94
++ + N+ W+ S + Y+ S+ +S L
Sbjct: 202 TLDAEKVFTQG-LNILEWLENPSNTPDKDYL------------LSIPISCPLIGVIQLAH 248
Query: 95 NKFDLTSTVQDWYSSGLQDRLRLLVDCSGCG-DLIHPVLFQQTQKAEDSWRPFL 147
+ +T+ + + L+ L+ +G L+ V DSW F
Sbjct: 249 --YVVTAKLLGFTPGELRSYLKGA---TGHSQGLVTAVAIA----ETDSWESFF 293
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.71
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 16/41 (39%)
Query: 134 QQTQKAEDSWRPFLVVYTD---PTVTRRVKRRALDCSATTK 171
Q +K + S L +Y D P AL AT +
Sbjct: 20 QALKKLQAS----LKLYADDSAP---------ALAIKATME 47
Score = 27.2 bits (59), Expect = 3.6
Identities = 7/45 (15%), Positives = 13/45 (28%), Gaps = 19/45 (42%)
Query: 226 EYRKMDRLSGLQPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVD 270
E + + +L SL + DS P + +
Sbjct: 18 EKQALKKLQA-------------SLKLYADDS------APALAIK 43
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics,
PSI-2, protein structure initiative; 2.50A
{Staphylococcus aureus subsp}
Length = 280
Score = 29.2 bits (66), Expect = 1.2
Identities = 7/43 (16%), Positives = 13/43 (30%), Gaps = 9/43 (20%)
Query: 124 CGDLIHPVLFQQTQKAEDSWRPFLVVY-TDPTVTRRVKRRALD 165
GD+ + ++ Y P + R K R +
Sbjct: 204 MGDIFPTTAHKN--------PLWVTAYDDYPMQSIREKERMIP 238
>3igz_B Cofactor-independent phosphoglycerate mutase; glycolysis, cobalt,
isomerase; HET: 3PG 2PG; 1.90A {Leishmania mexicana}
PDB: 3igy_B* 3nvl_A
Length = 561
Score = 28.7 bits (65), Expect = 2.0
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 6 QLLEFPRPKEMDGTELKVKSA 26
LL F P++ + + + V+
Sbjct: 534 NLLGFEAPEDYEPSLIYVEKL 554
>3mvg_A IRIP, ribosome inactivating type 1 protein; ribosome inactivating
protein type I, PI-loop, hydrola; HET: GOL; 1.25A {Iris
hollandica}
Length = 275
Score = 27.4 bits (60), Expect = 5.4
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 97 FDLTSTVQDWYSSGLQD-RLRLLVDCSGCGDLIHPVLFQQTQKAEDSWRPFLVVYTDPTV 155
F +T T + YS LQ+ R RL S P+L Q+ +D L + + +
Sbjct: 6 FRVTGTTRRSYSDFLQNLRNRLSSGTSVHD---IPLLPAQSGSQQDLLFVRLFDWGNRPI 62
Query: 156 TRRVKRR 162
T + R
Sbjct: 63 TLVLNRV 69
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 6.0
Identities = 27/202 (13%), Positives = 64/202 (31%), Gaps = 44/202 (21%)
Query: 66 ATYVSGKEFDEQTEMSAS--LTVSLSSSLGWNKFDLTSTVQDWYSSGLQDRLRLLVDCSG 123
Y+ + D E+ + +S+ + + D +T +W D+L +++
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSI---IAESIRDGLATWDNWKHVNC-DKLTTIIE--S 361
Query: 124 CGDLIHPVLFQQTQKA-----EDSWRPFLV--------VYTDP--TVTRRVKRRALDCSA 168
+++ P +++ + P ++ + +D V + K ++
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK-- 419
Query: 169 TTKGQCCKQKF-----YVSFKQLGWEDW-----IIAPSGYYANYCRGDCGVRRTPDMY-Y 217
Q + Y+ K ++ I+ + D D Y Y
Sbjct: 420 ----QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL-DQYFY 474
Query: 218 NHYSH---VIEEYRKMDRLSGL 236
+H H IE +M +
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMV 496
>1o98_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase;
isomerase, alpha/beta-type structure; HET: 2PG; 1.4A
{Bacillus stearothermophilus} SCOP: c.105.1.1 c.76.1.3
PDB: 1ejj_A* 1eqj_A* 1o99_A* 2ify_A
Length = 511
Score = 27.5 bits (62), Expect = 6.0
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 6 QLLEFPRPKEMDGTELKVK 24
LL P+PKEM G L VK
Sbjct: 493 DLLGLPQPKEMTGKSLIVK 511
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.439
Gapped
Lambda K H
0.267 0.0445 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,281,623
Number of extensions: 241073
Number of successful extensions: 390
Number of sequences better than 10.0: 1
Number of HSP's gapped: 370
Number of HSP's successfully gapped: 21
Length of query: 275
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 183
Effective length of database: 4,133,061
Effective search space: 756350163
Effective search space used: 756350163
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.1 bits)