RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2425
(275 letters)
>d2h62a1 g.17.1.2 (A:12-114) Bone morphogenetic protein-2 (BMP-2)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 133 bits (337), Expect = 1e-40
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 173 QCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEEYRKMDR 232
C + YV F +GW DWI+AP GY+A YC G+C + +++ V ++
Sbjct: 2 SCKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNS 61
Query: 233 LSGLQPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGC 274
+ CC P + S +S++Y + ++ ++ MVV+ CGC
Sbjct: 62 -KIPKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCGC 102
>d1lxia_ g.17.1.2 (A:) Bone morphogenetic protein-7 (BMP-7) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 133 bits (336), Expect = 2e-40
Identities = 41/101 (40%), Positives = 59/101 (58%)
Query: 174 CCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEEYRKMDRL 233
C K + YVSF+ LGW+DWIIAP GY A YC G+C M +++ V ++
Sbjct: 3 CKKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMNATNHAIVQTLVHFINPE 62
Query: 234 SGLQPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGC 274
+ +PCCAP + + +S++YF SN+I + MVV CGC
Sbjct: 63 TVPKPCCAPTQLNAISVLYFDDSSNVILKKYRNMVVRACGC 103
>d2arpa1 g.17.1.2 (A:1-116) Activin A (Inhibin beta A) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 116
Score = 132 bits (334), Expect = 6e-40
Identities = 52/115 (45%), Positives = 70/115 (60%), Gaps = 5/115 (4%)
Query: 164 LDCSATTKGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNH--YS 221
L+C CCK++F+VSFK +GW DWIIAPSGY+ANYC G+C + +S
Sbjct: 2 LECDGKVN-ICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHIAGTSGSSLSFHS 60
Query: 222 HVIEEYR--KMDRLSGLQPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGC 274
VI YR + L+ CC P K PMS++Y+ NIIK+D+ M+V+ECGC
Sbjct: 61 TVINHYRMRGHSPFANLKSCCVPTKLRPMSMLYYDDGQNIIKKDIQNMIVEECGC 115
>d2tgia_ g.17.1.2 (A:) TGF-beta2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 112
Score = 125 bits (316), Expect = 3e-37
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 7/115 (6%)
Query: 163 ALD---CSATTKGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNH 219
ALD C + CC + Y+ FK+ WI P GY AN+C G C + D H
Sbjct: 1 ALDAAYCFRNVQDNCCLRPLYIDFKRDLGWKWIHEPKGYNANFCAGACPYLWSSD--TQH 58
Query: 220 YSHVIEEYRKMDRLSGLQPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGC 274
S V+ Y ++ + PCC P++++Y+ + I++ L M+V C C
Sbjct: 59 -SRVLSLYNTINPEASASPCCVSQDLEPLTILYYIGKTPKIEQ-LSNMIVKSCKC 111
>d1agqa_ g.17.1.2 (A:) Glial cell-derived neurotrophic factor, GDNF
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 97
Score = 99.2 bits (247), Expect = 4e-27
Identities = 23/102 (22%), Positives = 33/102 (32%), Gaps = 8/102 (7%)
Query: 173 QCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHVIEEYRKMDR 232
C +++ LG YC G C T MY ++ R++
Sbjct: 3 GCVLTAIHLNVTDLGL--GYETKEELIFRYCSGSCEAAET--MYDKILKNLSR-SRRLTS 57
Query: 233 LSGLQPCCAPVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGC 274
Q CC PV F D +++ L K CGC
Sbjct: 58 DKVGQACCRPVAFDDDLSFL---DDSLVYHILRKHSAKRCGC 96
>d1vrma1 d.96.2.1 (A:44-352) Hypothetical protein TM1553 {Thermotoga
maritima [TaxId: 2336]}
Length = 309
Score = 27.2 bits (59), Expect = 2.4
Identities = 13/158 (8%), Positives = 31/158 (19%), Gaps = 6/158 (3%)
Query: 104 QDWYSSGLQDRLRLLVDCSGCGDLIHPVLFQQTQKAEDSWRPFLVVYTDPTVTRRVKRRA 163
+ + L L +L P + + + + ++
Sbjct: 84 DGAFDPTVGRLLELWGFTGNYENLRVPSREEIEEALKHTGYKNVLFDDKNMRVMVKNGVK 143
Query: 164 LDCSATTKGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSHV 223
+D KG + ++ + G + V
Sbjct: 144 IDLGGIAKGYALDRARQIALSFDENATGFVEAGGDVRIIGPKFGKYPWVIGVKDPRGDDV 203
Query: 224 IEEYRKMDRLSGLQPCCAPVKFSPMSLIYFGPDSNIIK 261
I+ A + G + I
Sbjct: 204 IDYIYLKS------GAVATSGDYERYFVVDGVRYHHIL 235
>d2pl5a1 c.69.1.40 (A:5-366) Homoserine O-acetyltransferase
{Leptospira interrogans [TaxId: 173]}
Length = 362
Score = 26.6 bits (58), Expect = 3.1
Identities = 9/57 (15%), Positives = 14/57 (24%), Gaps = 4/57 (7%)
Query: 166 CSATTKGQCCKQKFYVSFKQLGWEDWIIAPSGYYANYCRGDCGVRRTPDMYYNHYSH 222
C A + S K+ GW D I P + ++
Sbjct: 48 CHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKSFDTNQYFII----CSNVIGGCKGS 100
>d1mbma_ b.47.1.3 (A:) NSP4 proteinase {Equine arteritis virus, EAV
[TaxId: 11047]}
Length = 198
Score = 25.7 bits (56), Expect = 5.9
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 241 APVKFSPMSLIYFGPDSNIIKRDLPKMVVDECGCP 275
V S +S + GP ++I K ++ D P
Sbjct: 150 DTVTLSSLSKHFTGPLTSIPKDIPDNIIADVDAVP 184
>d1ug0a_ a.217.1.1 (A:) Splicing factor 4 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 24.5 bits (53), Expect = 6.3
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 214 DMYYNHYSHVIEEYRKMDRLSG 235
+ +Y + E RK SG
Sbjct: 67 SREFLYYRRKVAEIRKSGPSSG 88
>d3crda_ a.77.1.3 (A:) Raidd CARD domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 100
Score = 24.4 bits (53), Expect = 6.9
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 156 TRRVKRRALDCSATTKGQCCKQKFYVSFKQLGW 188
T K L ++G F S ++ W
Sbjct: 49 TGLRKTMLLLDILPSRGPKAFDTFLDSLQEFPW 81
>d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 192
Score = 25.1 bits (55), Expect = 8.5
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 209 VRRTPDMYYNHYSHVIEEYR 228
+R T D Y +E
Sbjct: 5 IRETGDDYRTITLPYLESQS 24
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.439
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,088,855
Number of extensions: 50746
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 16
Length of query: 275
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 191
Effective length of database: 1,254,276
Effective search space: 239566716
Effective search space used: 239566716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.0 bits)