BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2427
(660 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BFJ|A Chain A, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|B Chain B, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|C Chain C, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|D Chain D, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|E Chain E, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|F Chain F, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|G Chain G, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|H Chain H, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|I Chain I, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|J Chain J, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|K Chain K, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|L Chain L, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|M Chain M, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|N Chain N, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|O Chain O, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|P Chain P, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|Q Chain Q, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|R Chain R, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|S Chain S, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|T Chain T, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
Length = 387
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 85/345 (24%), Positives = 146/345 (42%), Gaps = 40/345 (11%)
Query: 34 GPGVTREVGMDMVNMKAQRVCVMTDPHLS--KLAPVKATLDSLTRHGVKFELFDKVRVEP 91
GP VG + ++ ++TD L K V TL L G++ +FD V P
Sbjct: 17 GPNAISVVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNP 76
Query: 92 TGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPV 151
+ + R QCD + VGGGS D K + E + Y + +
Sbjct: 77 KDTNVRDGLAVFRREQCDIIVTVGGGSPHDCGKGIGIA-ATHEGDLYQYAGI-----ETL 130
Query: 152 TVPLKPLIAIPXXXXXXXXXXXXXIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPER 211
T PL P++A+ + K K I + P++ + DPL + P
Sbjct: 131 TNPLPPIVAVNTTAGTASEVTRHCVLTNTETKVKFVIVSWRNLPSVSINDPLLMIGKPAA 190
Query: 212 VTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYF 271
+TA +G D HA+E++ + + NPV+D A A++ I +
Sbjct: 191 LTAATGMDALTHAVEAYIS-------------------KDANPVTDAAAMQAIRLIARNL 231
Query: 272 KRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPI 331
++AV +L+AR +M AS +AG+ F NA + H +++ + G
Sbjct: 232 RQAVALGSNLQAREYMAYASLLAGMAFNNANLGYVHAMAHQLGGLYD------------- 278
Query: 332 IPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADA 376
+PHG++ + P V + ++PE+ + AEL+G +++ + DA
Sbjct: 279 MPHGVANAVLLPHVARYNLIANPEKFADIAELMGENITGLSTLDA 323
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 116/247 (46%), Gaps = 35/247 (14%)
Query: 411 PTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNP 470
P++ + DPL + P +TA +G D HA+E++ + + NP
Sbjct: 174 PSVSINDPLLMIGKPAALTAATGMDALTHAVEAYIS-------------------KDANP 214
Query: 471 VSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPIS 530
V+D A A++ I + ++AV +L+AR +M AS +AG+ F NA + H +++ +
Sbjct: 215 VTDAAAMQAIRLIARNLRQAVALGSNLQAREYMAYASLLAGMAFNNANLGYVHAMAHQLG 274
Query: 531 GNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKA 590
G +PHG++ + P V + ++PE+ + AEL+G +++ +
Sbjct: 275 GLYD-------------MPHGVANAVLLPHVARYNLIANPEKFADIAELMGENITGLSTL 321
Query: 591 DAG-KLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDL 649
DA K +A R MD + I L+ LG D P + L PR+ +E+++
Sbjct: 322 DAAEKAIAAITRLSMD-IGIPQHLRDLGVKETDFPYMAEMALKDGNAFS-NPRKGNEQEI 379
Query: 650 ANLFENS 656
A +F +
Sbjct: 380 AAIFRQA 386
>pdb|3OWO|A Chain A, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 With And Without Nad Cofactor
pdb|3OWO|B Chain B, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 With And Without Nad Cofactor
pdb|3OWO|C Chain C, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 With And Without Nad Cofactor
pdb|3OWO|D Chain D, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 With And Without Nad Cofactor
pdb|3OX4|A Chain A, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 Complexed With Nad Cofactor
pdb|3OX4|B Chain B, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 Complexed With Nad Cofactor
pdb|3OX4|C Chain C, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 Complexed With Nad Cofactor
pdb|3OX4|D Chain D, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 Complexed With Nad Cofactor
Length = 383
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/352 (25%), Positives = 145/352 (41%), Gaps = 44/352 (12%)
Query: 26 MASSTIRI------GPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGV 79
MASST I G G + D+ + +++D ++K VK D L G+
Sbjct: 1 MASSTFYIPFVNEMGEGSLEKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGI 60
Query: 80 KFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLD 139
++D V PT + LE K ++ D I++GGGS D KA L + E D
Sbjct: 61 NSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISLGGGSPHDCAKAIALVATNG-GEVKD 119
Query: 140 YVNAPIGKGKPVTVPLKPLIAIPXXXXXXXXXXXXXIFDYEPLKAKTGIANRALKPTLGL 199
Y I K K P PL++I I E K I +R + P + +
Sbjct: 120 Y--EGIDKSKK---PALPLMSINTTAGTASEMTRFCIITDEVRHVKMAIVDRHVTPMVSV 174
Query: 200 IDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVW 259
DPL + +P+ +TA +G D HA E++++ T P++D
Sbjct: 175 NDPLLMVGMPKGLTAATGMDALTHAFEAYSSTAAT-------------------PITDAC 215
Query: 260 ARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKT 319
A A I + K A N D+ AR M A +AG+ F NA + H +++ +
Sbjct: 216 ALKAASMIAKNLKTACDNGKDMPAREAMAYAQFLAGMAFNNASLGYVHAMAHQL------ 269
Query: 320 FHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRV 371
GY + +PHG+ + P V + A+ R + +G D++ +
Sbjct: 270 ---GGYYN----LPHGVCNAVLLPHVLAYNASVVAGRLKDVGVAMGLDIANL 314
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 107/262 (40%), Gaps = 33/262 (12%)
Query: 392 IFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTE 451
I E K I +R + P + + DPL + +P+ +TA +G D HA E++++ T
Sbjct: 151 IITDEVRHVKMAIVDRHVTPMVSVNDPLLMVGMPKGLTAATGMDALTHAFEAYSSTAAT- 209
Query: 452 RTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAG 511
P++D A A I + K A N D+ AR M A +AG
Sbjct: 210 ------------------PITDACALKAASMIAKNLKTACDNGKDMPAREAMAYAQFLAG 251
Query: 512 VGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPE 571
+ F NA + H +++ + GY + +PHG+ + P V + A+
Sbjct: 252 MAFNNASLGYVHAMAHQL---------GGYYN----LPHGVCNAVLLPHVLAYNASVVAG 298
Query: 572 RHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTL 631
R + +G D++ + + + VR + I L LG D+P L L
Sbjct: 299 RLKDVGVAMGLDIANLGDKEGAEATIQAVRDLAASIGIPANLTELGAKKEDVPLLADHAL 358
Query: 632 PQHRITKLAPREQSEEDLANLF 653
+ PR+ ++++ LF
Sbjct: 359 -KDACALTNPRQGDQKEVEELF 379
>pdb|2BI4|A Chain A, Lactaldehyde:1,2-Propanediol Oxidoreductase Of Escherichia
Coli
pdb|2BI4|B Chain B, Lactaldehyde:1,2-Propanediol Oxidoreductase Of Escherichia
Coli
pdb|2BL4|A Chain A, Lactaldehyde:1,2-Propanediol Oxidoreductase Of Escherichia
Coli
pdb|2BL4|B Chain B, Lactaldehyde:1,2-Propanediol Oxidoreductase Of Escherichia
Coli
Length = 392
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/326 (24%), Positives = 132/326 (40%), Gaps = 38/326 (11%)
Query: 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDA 110
Q+ ++TD L + V D + G+ + ++D V PT E ++ D
Sbjct: 41 QKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADY 100
Query: 111 FIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPXXXXXXXX 170
IA+GGGS DTCKA + +P EF D V + G P P P++AIP
Sbjct: 101 LIAIGGGSPQDTCKAIGIISNNP--EFAD-VRSLEGL-SPTNKPSVPILAIPTTAGTAAE 156
Query: 171 XXXXXIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTA 230
+ E + K + P + ID +P + A +G D HA+E +
Sbjct: 157 VTINYVITDEEKRRKFVCVDPHDIPQVAFIDADMMDGMPPALKAATGVDALTHAIEGYIT 216
Query: 231 LPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLA 290
+G ++D A++ I + +V D +A M L
Sbjct: 217 -------------------RGAWALTDALHIKAIEIIAGALRGSVAG--DKDAGEEMALG 255
Query: 291 SAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTA 350
+AG+GF N G+ L HG+++P+ T PHG++ + P V + A
Sbjct: 256 QYVAGMGFSNVGLGLVHGMAHPLGAFYNT-------------PHGVANAILLPHVMRYNA 302
Query: 351 ASSPERHIEAAELLGADVSRVKKADA 376
+ E++ + A ++G V + +A
Sbjct: 303 DFTGEKYRDIARVMGVKVEGMSLEEA 328
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 99/246 (40%), Gaps = 35/246 (14%)
Query: 411 PTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNP 470
P + ID +P + A +G D HA+E + +G
Sbjct: 181 PQVAFIDADMMDGMPPALKAATGVDALTHAIEGYIT-------------------RGAWA 221
Query: 471 VSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPIS 530
++D A++ I + +V D +A M L +AG+GF N G+ L HG+++P+
Sbjct: 222 LTDALHIKAIEIIAGALRGSVAG--DKDAGEEMALGQYVAGMGFSNVGLGLVHGMAHPLG 279
Query: 531 GNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKA 590
T PHG++ + P V + A + E++ + A ++G V +
Sbjct: 280 AFYNT-------------PHGVANAILLPHVMRYNADFTGEKYRDIARVMGVKVEGMSLE 326
Query: 591 DAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLA 650
+A + V + I L+ +G DIPAL L T PRE + ED+
Sbjct: 327 EARNAAVEAVFALNRDVGIPPHLRDVGVRKEDIPALAQAAL-DDVCTGGNPREATLEDIV 385
Query: 651 NLFENS 656
L+ +
Sbjct: 386 ELYHTA 391
>pdb|1RRM|A Chain A, Crystal Structure Of Lactaldehyde Reductase
pdb|1RRM|B Chain B, Crystal Structure Of Lactaldehyde Reductase
Length = 386
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/319 (24%), Positives = 125/319 (39%), Gaps = 38/319 (11%)
Query: 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDA 110
Q+ ++TD L + V D G+ + ++D V PT E ++ D
Sbjct: 32 QKALIVTDKTLVQCGVVAKVTDKXDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADY 91
Query: 111 FIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPXXXXXXXX 170
IA+GGGS DTCKA + +P EF D V + G P P P++AIP
Sbjct: 92 LIAIGGGSPQDTCKAIGIISNNP--EFAD-VRSLEGL-SPTNKPSVPILAIPTTAGTAAE 147
Query: 171 XXXXXIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTA 230
+ E + K + P + ID P + A +G D HA+E +
Sbjct: 148 VTINYVITDEEKRRKFVCVDPHDIPQVAFIDADXXDGXPPALKAATGVDALTHAIEGY-- 205
Query: 231 LPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLA 290
+ R A+ ++D A++ I + +V D +A L
Sbjct: 206 -------------ITRGAWA----LTDALHIKAIEIIAGALRGSVAG--DKDAGEEXALG 246
Query: 291 SAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTA 350
+AG GF N G+ L HG ++P+ T PHG++ + P V + A
Sbjct: 247 QYVAGXGFSNVGLGLVHGXAHPLGAFYNT-------------PHGVANAILLPHVXRYNA 293
Query: 351 ASSPERHIEAAELLGADVS 369
+ E++ + A + G V
Sbjct: 294 DFTGEKYRDIARVXGVKVE 312
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 95/248 (38%), Gaps = 35/248 (14%)
Query: 411 PTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNP 470
P + ID P + A +G D HA+E + + R A+
Sbjct: 172 PQVAFIDADXXDGXPPALKAATGVDALTHAIEGY---------------ITRGAWA---- 212
Query: 471 VSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPIS 530
++D A++ I + +V D +A L +AG GF N G+ L HG ++P+
Sbjct: 213 LTDALHIKAIEIIAGALRGSVAG--DKDAGEEXALGQYVAGXGFSNVGLGLVHGXAHPLG 270
Query: 531 GNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKA 590
T PHG++ + P V + A + E++ + A + G V
Sbjct: 271 AFYNT-------------PHGVANAILLPHVXRYNADFTGEKYRDIARVXGVKVEGXSLE 317
Query: 591 DAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLA 650
+A + V + I L+ +G DIPAL L T PRE + ED+
Sbjct: 318 EARNAAVEAVFALNRDVGIPPHLRDVGVRKEDIPALAQAAL-DDVCTGGNPREATLEDIV 376
Query: 651 NLFENSMS 658
L+ +
Sbjct: 377 ELYHTAWE 384
>pdb|1VHD|A Chain A, Crystal Structure Of An Iron Containing Alcohol
Dehydrogenase
pdb|1VHD|B Chain B, Crystal Structure Of An Iron Containing Alcohol
Dehydrogenase
Length = 371
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 110/275 (40%), Gaps = 37/275 (13%)
Query: 44 DMVNMKAQRVCVMTDPHLSK----LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEA 99
+++++ +R V+T SK L +K LD + +E+FD+V P+ D+ +A
Sbjct: 24 NIIDLLGKRALVVTGKSSSKKNGSLDDLKKLLDETE---ISYEIFDEVEENPSFDNVXKA 80
Query: 100 TKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLI 159
+ R+ D + +GGGS D KA + + + D + + P++
Sbjct: 81 VERYRNDSFDFVVGLGGGSPXDFAKAVAVLLKEKDLSVEDLYD------REKVKHWLPVV 134
Query: 160 AIPXXXXXXXXXXXXXIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 219
IP I +P K G P +DP +T S + +T +G D
Sbjct: 135 EIPTTAGTGSEVTPYSILT-DPEGNKRGCT--LXFPVYAFLDPRYTYSXSDELTLSTGVD 191
Query: 220 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 279
HA+E + + T P SD A A + I + +A+ +
Sbjct: 192 ALSHAVEGYLSRKST-------------------PPSDALAIEAXKIIHRNLPKAI--EG 230
Query: 280 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPIS 314
+ EAR +AS +AG G L H L YP++
Sbjct: 231 NREARKKXFVASCLAGXVIAQTGTTLAHALGYPLT 265
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 21/120 (17%)
Query: 411 PTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNP 470
P +DP +T S + +T +G D HA+E + + T P
Sbjct: 167 PVYAFLDPRYTYSXSDELTLSTGVDALSHAVEGYLSRKST-------------------P 207
Query: 471 VSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPIS 530
SD A A + I + +A+ + + EAR +AS +AG G L H L YP++
Sbjct: 208 PSDALAIEAXKIIHRNLPKAI--EGNREARKKXFVASCLAGXVIAQTGTTLAHALGYPLT 265
>pdb|1O2D|A Chain A, Crystal Structure Of Alcohol Dehydrogenase,
Iron-Containing (Tm0920) From Thermotoga Maritima At
1.30 A Resolution
pdb|1O2D|B Chain B, Crystal Structure Of Alcohol Dehydrogenase,
Iron-Containing (Tm0920) From Thermotoga Maritima At
1.30 A Resolution
Length = 371
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 110/275 (40%), Gaps = 37/275 (13%)
Query: 44 DMVNMKAQRVCVMTDPHLSK----LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEA 99
+++++ +R V+T SK L +K LD + +E+FD+V P+ D+ +A
Sbjct: 34 NIIDLLGKRALVVTGKSSSKKNGSLDDLKKLLDETE---ISYEIFDEVEENPSFDNVXKA 90
Query: 100 TKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLI 159
+ R+ D + +GGGS D KA + + + D + + P++
Sbjct: 91 VERYRNDSFDFVVGLGGGSPXDFAKAVAVLLKEKDLSVEDLYD------REKVKHWLPVV 144
Query: 160 AIPXXXXXXXXXXXXXIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 219
IP I +P K G P +DP +T S + +T +G D
Sbjct: 145 EIPTTAGTGSEVTPYSILT-DPEGNKRGCT--LXFPVYAFLDPRYTYSXSDELTLSTGVD 201
Query: 220 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 279
HA+E + + T P SD A A + I + +A+ +
Sbjct: 202 ALSHAVEGYLSRKST-------------------PPSDALAIEAXKIIHRNLPKAI--EG 240
Query: 280 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPIS 314
+ EAR +AS +AG G L H L YP++
Sbjct: 241 NREARKKXFVASCLAGXVIAQTGTTLAHALGYPLT 275
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 21/120 (17%)
Query: 411 PTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNP 470
P +DP +T S + +T +G D HA+E + + T P
Sbjct: 177 PVYAFLDPRYTYSXSDELTLSTGVDALSHAVEGYLSRKST-------------------P 217
Query: 471 VSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPIS 530
SD A A + I + +A+ + + EAR +AS +AG G L H L YP++
Sbjct: 218 PSDALAIEAXKIIHRNLPKAI--EGNREARKKXFVASCLAGXVIAQTGTTLAHALGYPLT 275
>pdb|1VLJ|A Chain A, Crystal Structure Of Nadh-Dependent Butanol Dehydrogenase
A (Tm0820) From Thermotoga Maritima At 1.78 A Resolution
pdb|1VLJ|B Chain B, Crystal Structure Of Nadh-Dependent Butanol Dehydrogenase
A (Tm0820) From Thermotoga Maritima At 1.78 A Resolution
Length = 407
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 126/306 (41%), Gaps = 40/306 (13%)
Query: 29 STIRIGPGVTREVGMDMVNMKAQRVCVM-TDPHLSKLAPVKATLDSLTRHGVKFELFDKV 87
+ I G G ++G ++ N ++V + + K +DSL +HG+++ V
Sbjct: 22 TKIVFGRGTIPKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGV 81
Query: 88 RVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCK---AANLYYCDPEAEFLDYVNAP 144
+ P EA + + + +A + VGGGSV+D+ K A LY D F+
Sbjct: 82 KPNPVLSKVHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGALYEGDIWDAFI------ 135
Query: 145 IGKGKPVTVPLKPLIAIPXXXXXXXXXXXXXIFDYEPLKAKTGIANRALKPTLGLIDPLH 204
GK P+ + + E K K G++++AL P + +IDP
Sbjct: 136 ---GKYQIEKALPIFDVLTISATGTEMNGNAVITNEKTKEKYGVSSKALYPKVSIIDPSV 192
Query: 205 TLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNP-VSDVWARFA 263
+LP+ T Y D H LE + + G +P +S+ A
Sbjct: 193 QFTLPKEQTVYGAVDAISHILEYY--------------------FDGSSPEISNEIAEGT 232
Query: 264 LQTIRQYFKRAVYNQDDLEARSHMHLASAMA-----GVGFGNAGVHLCHGLSYPISGNVK 318
++TI + +R + DD EAR+++ ++ +A VG G CH + + +S
Sbjct: 233 IRTIMKMTERLIEKPDDYEARANLAWSATIALNGTMAVGR-RGGEWACHRIEHSLSALYD 291
Query: 319 TFHPAG 324
H AG
Sbjct: 292 IAHGAG 297
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 27/151 (17%)
Query: 396 EPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPC 455
E K K G++++AL P + +IDP +LP+ T Y D H LE +
Sbjct: 168 EKTKEKYGVSSKALYPKVSIIDPSVQFTLPKEQTVYGAVDAISHILEYY----------- 216
Query: 456 PTDPLLRPAYQGQNP-VSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMA---- 510
+ G +P +S+ A ++TI + +R + DD EAR+++ ++ +A
Sbjct: 217 ---------FDGSSPEISNEIAEGTIRTIMKMTERLIEKPDDYEARANLAWSATIALNGT 267
Query: 511 -GVGFGNAGVHLCHGLSYPISGNVKTFHPAG 540
VG G CH + + +S H AG
Sbjct: 268 MAVGR-RGGEWACHRIEHSLSALYDIAHGAG 297
>pdb|3JZD|A Chain A, Crystal Structure Of Putative Alcohol Dehedrogenase
(yp_298327.1) From Ralstonia Eutropha Jmp134 At 2.10 A
Resolution
pdb|3JZD|B Chain B, Crystal Structure Of Putative Alcohol Dehedrogenase
(yp_298327.1) From Ralstonia Eutropha Jmp134 At 2.10 A
Resolution
pdb|3JZD|C Chain C, Crystal Structure Of Putative Alcohol Dehedrogenase
(yp_298327.1) From Ralstonia Eutropha Jmp134 At 2.10 A
Resolution
pdb|3JZD|D Chain D, Crystal Structure Of Putative Alcohol Dehedrogenase
(yp_298327.1) From Ralstonia Eutropha Jmp134 At 2.10 A
Resolution
Length = 358
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 75/335 (22%), Positives = 119/335 (35%), Gaps = 65/335 (19%)
Query: 22 YAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKF 81
+ +E ++ + G G + +V ++ + A+R V+ P+ A A L GV
Sbjct: 8 FIYEAHAARVVFGAGSSSQVAAEVERLGAKRALVLCTPNQQAEAERIADLLGPLSAGVYA 67
Query: 82 ELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYV 141
V +E S +AT R D +AVGGGS KA L
Sbjct: 68 GAVXHVPIE----SARDATARAREAGADCAVAVGGGSTTGLGKAIALETG---------- 113
Query: 142 NAPIGKGKPVTVPLKPLIAIPXXXXXXXXXXXXXIFDYEPLKAKTGIANRALKPTLGLID 201
P++AIP + E +TG R L T+ + D
Sbjct: 114 --------------XPIVAIPTTYAGSEVTPVYGLT--EAGTKRTGRDPRVLPRTV-IYD 156
Query: 202 PLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWAR 261
P T+ LP ++ S + HA E A + NPV + A
Sbjct: 157 PALTVGLPRGLSVTSALNAIAHAAEGLYA-------------------RDANPVXSLXAE 197
Query: 262 FALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFH 321
++ + + DL+ARS + + G G G L H L + + G+ H
Sbjct: 198 EGIRALAAGIPAVFNDPADLDARSQCLYGAWLCGTVLGGVGXALHHKLCHTLGGSFNLPH 257
Query: 322 PAGYSDDHPII-PHGLSVVMSAPAVFNFTAASSPE 355
++ H I+ PH L+ + AA+ PE
Sbjct: 258 ----AETHTIVLPHALA----------YNAAAVPE 278
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 66/172 (38%), Gaps = 35/172 (20%)
Query: 401 KTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPL 460
+TG R L T+ + DP T+ LP ++ S + HA E A
Sbjct: 141 RTGRDPRVLPRTV-IYDPALTVGLPRGLSVTSALNAIAHAAEGLYA-------------- 185
Query: 461 LRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVH 520
+ NPV + A ++ + + DL+ARS + + G G G
Sbjct: 186 -----RDANPVXSLXAEEGIRALAAGIPAVFNDPADLDARSQCLYGAWLCGTVLGGVGXA 240
Query: 521 LCHGLSYPISGNVKTFHPAGYSDDHPII-PHGLSVVMSAPAVFNFTAASSPE 571
L H L + + G+ H ++ H I+ PH L+ + AA+ PE
Sbjct: 241 LHHKLCHTLGGSFNLPH----AETHTIVLPHALA----------YNAAAVPE 278
>pdb|1OJ7|A Chain A, Structural Genomics, Unknown Function Crystal Structure Of
E. Coli K-12 Yqhd
pdb|1OJ7|B Chain B, Structural Genomics, Unknown Function Crystal Structure Of
E. Coli K-12 Yqhd
pdb|1OJ7|C Chain C, Structural Genomics, Unknown Function Crystal Structure Of
E. Coli K-12 Yqhd
pdb|1OJ7|D Chain D, Structural Genomics, Unknown Function Crystal Structure Of
E. Coli K-12 Yqhd
Length = 408
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 69/314 (21%), Positives = 123/314 (39%), Gaps = 41/314 (13%)
Query: 61 LSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVI 120
+ K + LD+L G+ F + P ++ + A K VR + +AVGGGSV+
Sbjct: 62 VKKTGVLDQVLDALK--GMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSVL 119
Query: 121 DTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPXXXXXXXXXXXXXIFDYE 180
D K PE ++ GK +P+ ++ +P + +
Sbjct: 120 DGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATGSESNAGA---VISRK 176
Query: 181 PLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCP 240
K + ++P ++DP++T +LP R A D F H +E + P +
Sbjct: 177 TTGDKQAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTKPVDAK---- 232
Query: 241 TDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGN 300
+ D +A L T+ + +A+ ++ + R+++ A+ A G
Sbjct: 233 --------------IHDRFAEGILLTLIEDGPKALKEPENYDVRANVMWAATQALNGLIG 278
Query: 301 AGV------HLC-------HGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFN 347
AGV H+ HGL + + + PA +++ L + A V+N
Sbjct: 279 AGVPQDWATHMLGHELTAMHGLDH--AQTLAIVLPALWNEKRDTKRAKL--LQYAERVWN 334
Query: 348 FTAASSPERHIEAA 361
T S ER I+AA
Sbjct: 335 ITEGSDDER-IDAA 347
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 102/240 (42%), Gaps = 46/240 (19%)
Query: 409 LKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQ 468
++P ++DP++T +LP R A D F H +E + P +
Sbjct: 189 VQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTKPVDAK---------------- 232
Query: 469 NPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGV---HLCHGL 525
+ D +A L T+ + +A+ ++ + R+++ A+ A G AGV H L
Sbjct: 233 --IHDRFAEGILLTLIEDGPKALKEPENYDVRANVMWAATQALNGLIGAGVPQDWATHML 290
Query: 526 SYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELL----- 580
+ ++ A + DH L++V+ PA++N + + ++ AE +
Sbjct: 291 GHELT--------AMHGLDH---AQTLAIVL--PALWNEKRDTKRAKLLQYAERVWNITE 337
Query: 581 GADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLA 640
G+D R+ A A R + +Q+ + L G + IPAL+ L +H +T+L
Sbjct: 338 GSDDERIDAAIA------ATRNFFEQLGVPTHLSDYGLDGSSIPALLK-KLEEHGMTQLG 390
>pdb|3IV7|A Chain A, Crystal Structure Of Iron-Containing Alcohol Dehydrogenase
(Np_602249.1) From Corynebacterium Glutamicum Atcc 13032
Kitasato At 2.07 A Resolution
pdb|3IV7|B Chain B, Crystal Structure Of Iron-Containing Alcohol Dehydrogenase
(Np_602249.1) From Corynebacterium Glutamicum Atcc 13032
Kitasato At 2.07 A Resolution
Length = 364
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 99/277 (35%), Gaps = 63/277 (22%)
Query: 97 LEATKFVRSV----QCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVT 152
+E + R+V + D + VGGGS I KA T
Sbjct: 74 IEVAERARAVATDNEIDLLVCVGGGSTIGLAKAI-----------------------AXT 110
Query: 153 VPLKPLIAIPXXXXXXXXXXXXXIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERV 212
L P++AIP + E + TG+ + L T+ + D T SLP
Sbjct: 111 TAL-PIVAIPTTYAGSEATNVWGL--TEAARKTTGVDLKVLPETV-IYDSELTXSLPVEX 166
Query: 213 TAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFK 272
+ SG + H + D L P +P++ V A ++ + Q
Sbjct: 167 SVASGLNGLAHCI----------------DSLWGP---NADPINAVLAAEGIRALNQGLP 207
Query: 273 RAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPII 332
+ V N +E R + +A V F +AG L H + + + G TF+ +
Sbjct: 208 KIVANPHSIEGRDEALYGAYLAAVSFASAGSGLHHKICHTLGG---TFN----------L 254
Query: 333 PHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVS 369
PH + P V F A +PE AA G D +
Sbjct: 255 PHAQTHATVLPYVLAFNAGDAPEAERRAAAAFGTDTA 291
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 104/269 (38%), Gaps = 58/269 (21%)
Query: 396 EPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPC 455
E + TG+ + L T+ + D T SLP + SG + H +
Sbjct: 135 EAARKTTGVDLKVLPETV-IYDSELTXSLPVEXSVASGLNGLAHCI-------------- 179
Query: 456 PTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFG 515
D L P +P++ V A ++ + Q + V N +E R + +A V F
Sbjct: 180 --DSLWGP---NADPINAVLAAEGIRALNQGLPKIVANPHSIEGRDEALYGAYLAAVSFA 234
Query: 516 NAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIE 575
+AG L H + + + G TF+ +PH + P V F A +PE
Sbjct: 235 SAGSGLHHKICHTLGG---TFN----------LPHAQTHATVLPYVLAFNAGDAPEAERR 281
Query: 576 AAELLGAD-----VSRVK-KADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTG 629
AA G D + R++ +A K L+D G+ ++ I V
Sbjct: 282 AAAAFGTDTALEGLQRLRLSVNAPKRLSD-----------------YGFEASGIAEAVDV 324
Query: 630 TLPQHRITKLAPREQSEEDLANLFENSMS 658
TL ++ PR + E+L+ L E +++
Sbjct: 325 TL--EKVPANNPRPVTRENLSRLLEAALN 351
>pdb|3HL0|A Chain A, Crystal Structure Of Maleylacetate Reductase From
Agrobacterium Tumefaciens
pdb|3HL0|B Chain B, Crystal Structure Of Maleylacetate Reductase From
Agrobacterium Tumefaciens
Length = 353
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 57/149 (38%), Gaps = 24/149 (16%)
Query: 195 PTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNP 254
P + + D TL LP ++ SG + HA E+ A + +NP
Sbjct: 148 PEVVIYDAELTLGLPVAISXTSGLNAXAHAAEALYA-------------------RDRNP 188
Query: 255 VSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPIS 314
++ A L+ + D+ AR + + G G G L H L + +
Sbjct: 189 IASXXAVEGLRAXIEALPVVRQAPHDIGARETALYGAWLCGTVLGAVGXSLHHKLCHTLG 248
Query: 315 GNVKTFHPAGYSDDHPI-IPHGLSVVMSA 342
G++ H ++ H + +PH ++ V A
Sbjct: 249 GSLDLPH----AETHAVLLPHTIAYVEEA 273
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 57/149 (38%), Gaps = 24/149 (16%)
Query: 411 PTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNP 470
P + + D TL LP ++ SG + HA E+ A + +NP
Sbjct: 148 PEVVIYDAELTLGLPVAISXTSGLNAXAHAAEALYA-------------------RDRNP 188
Query: 471 VSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPIS 530
++ A L+ + D+ AR + + G G G L H L + +
Sbjct: 189 IASXXAVEGLRAXIEALPVVRQAPHDIGARETALYGAWLCGTVLGAVGXSLHHKLCHTLG 248
Query: 531 GNVKTFHPAGYSDDHPI-IPHGLSVVMSA 558
G++ H ++ H + +PH ++ V A
Sbjct: 249 GSLDLPH----AETHAVLLPHTIAYVEEA 273
>pdb|2VES|A Chain A, Crystal Structure Of Lpxc From Pseudomonas Aeruginosa
Complexed With The Potent Bb-78485 Inhibitor
pdb|2VES|B Chain B, Crystal Structure Of Lpxc From Pseudomonas Aeruginosa
Complexed With The Potent Bb-78485 Inhibitor
pdb|2VES|C Chain C, Crystal Structure Of Lpxc From Pseudomonas Aeruginosa
Complexed With The Potent Bb-78485 Inhibitor
pdb|3P3E|A Chain A, Crystal Structure Of The Pseudomonas Aeruginosa
LpxcLPC-009 Complex
pdb|3U1Y|A Chain A, Potent Inhibitors Of Lpxc For The Treatment Of
Gram-Negative Infections
pdb|3U1Y|B Chain B, Potent Inhibitors Of Lpxc For The Treatment Of
Gram-Negative Infections
pdb|3UHM|A Chain A, Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine
Deacetylase In Complex With Inhibitor
Length = 299
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 233 YTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASA 292
Y P P D + + +PV ++ AR + + + + D++ + HL SA
Sbjct: 25 YLTLKPAPVDTGIVFSRTDLDPVVEIPAR--AENVGETTMSTTLVKGDVKVDTVEHLLSA 82
Query: 293 MAGVGFGNAGVHLC 306
MAG+G NA V L
Sbjct: 83 MAGLGIDNAYVELS 96
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 449 YTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASA 508
Y P P D + + +PV ++ AR + + + + D++ + HL SA
Sbjct: 25 YLTLKPAPVDTGIVFSRTDLDPVVEIPAR--AENVGETTMSTTLVKGDVKVDTVEHLLSA 82
Query: 509 MAGVGFGNAGVHLC 522
MAG+G NA V L
Sbjct: 83 MAGLGIDNAYVELS 96
>pdb|1HQK|A Chain A, Crystal Structure Analysis Of Lumazine Synthase From
Aquifex Aeolicus
pdb|1HQK|B Chain B, Crystal Structure Analysis Of Lumazine Synthase From
Aquifex Aeolicus
pdb|1HQK|C Chain C, Crystal Structure Analysis Of Lumazine Synthase From
Aquifex Aeolicus
pdb|1HQK|D Chain D, Crystal Structure Analysis Of Lumazine Synthase From
Aquifex Aeolicus
pdb|1HQK|E Chain E, Crystal Structure Analysis Of Lumazine Synthase From
Aquifex Aeolicus
pdb|1NQU|A Chain A, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
6,7-dioxo-5h-8-ribitylaminolumazine
pdb|1NQU|B Chain B, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
6,7-dioxo-5h-8-ribitylaminolumazine
pdb|1NQU|C Chain C, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
6,7-dioxo-5h-8-ribitylaminolumazine
pdb|1NQU|D Chain D, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
6,7-dioxo-5h-8-ribitylaminolumazine
pdb|1NQU|E Chain E, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
6,7-dioxo-5h-8-ribitylaminolumazine
pdb|1NQV|A Chain A, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-nitroso-6-ribityl-amino-2,4(1h,3h) Pyrimidinedione
pdb|1NQV|B Chain B, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-nitroso-6-ribityl-amino-2,4(1h,3h) Pyrimidinedione
pdb|1NQV|C Chain C, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-nitroso-6-ribityl-amino-2,4(1h,3h) Pyrimidinedione
pdb|1NQV|D Chain D, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-nitroso-6-ribityl-amino-2,4(1h,3h) Pyrimidinedione
pdb|1NQV|E Chain E, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-nitroso-6-ribityl-amino-2,4(1h,3h) Pyrimidinedione
pdb|1NQW|A Chain A, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-(6-d-ribitylamino-2,4(1h,3h)
Pyrimidinedione-5-yl)-1-pentyl-phosphonic Acid
pdb|1NQW|B Chain B, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-(6-d-ribitylamino-2,4(1h,3h)
Pyrimidinedione-5-yl)-1-pentyl-phosphonic Acid
pdb|1NQW|C Chain C, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-(6-d-ribitylamino-2,4(1h,3h)
Pyrimidinedione-5-yl)-1-pentyl-phosphonic Acid
pdb|1NQW|D Chain D, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-(6-d-ribitylamino-2,4(1h,3h)
Pyrimidinedione-5-yl)-1-pentyl-phosphonic Acid
pdb|1NQW|E Chain E, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-(6-d-ribitylamino-2,4(1h,3h)
Pyrimidinedione-5-yl)-1-pentyl-phosphonic Acid
pdb|1NQX|A Chain A, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
3-(7-hydroxy-8-ribityllumazine-6-yl)propionic Acid
pdb|1NQX|B Chain B, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
3-(7-hydroxy-8-ribityllumazine-6-yl)propionic Acid
pdb|1NQX|C Chain C, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
3-(7-hydroxy-8-ribityllumazine-6-yl)propionic Acid
pdb|1NQX|D Chain D, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
3-(7-hydroxy-8-ribityllumazine-6-yl)propionic Acid
pdb|1NQX|E Chain E, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
3-(7-hydroxy-8-ribityllumazine-6-yl)propionic Acid
Length = 154
Score = 28.9 bits (63), Expect = 8.6, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 67 VKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVG 115
V+ +D + RHG + E VRV + + + A + R DA IA+G
Sbjct: 31 VEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARKEDIDAVIAIG 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,070,678
Number of Sequences: 62578
Number of extensions: 783085
Number of successful extensions: 1698
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1647
Number of HSP's gapped (non-prelim): 25
length of query: 660
length of database: 14,973,337
effective HSP length: 105
effective length of query: 555
effective length of database: 8,402,647
effective search space: 4663469085
effective search space used: 4663469085
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)