Query psy2427
Match_columns 660
No_of_seqs 298 out of 2613
Neff 7.9
Searched_HMMs 46136
Date Sat Aug 17 00:40:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2427.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2427hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3857|consensus 100.0 3E-77 6.6E-82 593.8 37.3 429 16-660 36-465 (465)
2 COG1454 EutG Alcohol dehydroge 100.0 5.4E-77 1.2E-81 626.7 38.8 373 26-657 5-377 (377)
3 PRK09860 putative alcohol dehy 100.0 4.4E-72 9.6E-77 604.8 41.1 383 19-657 1-383 (383)
4 cd08190 HOT Hydroxyacid-oxoaci 100.0 2.1E-71 4.6E-76 605.4 42.5 412 29-657 2-414 (414)
5 PRK15454 ethanol dehydrogenase 100.0 2.8E-70 6.1E-75 592.0 39.3 374 21-656 21-394 (395)
6 TIGR02638 lactal_redase lactal 100.0 2.6E-69 5.6E-74 583.8 38.8 377 22-653 2-379 (379)
7 PRK10624 L-1,2-propanediol oxi 100.0 1.4E-68 3.1E-73 578.6 38.9 379 22-657 3-382 (382)
8 cd08193 HVD 5-hydroxyvalerate 100.0 1.2E-68 2.6E-73 578.7 38.1 373 28-654 4-376 (376)
9 cd08191 HHD 6-hydroxyhexanoate 100.0 1.9E-68 4E-73 578.5 38.3 386 28-653 1-386 (386)
10 cd08186 Fe-ADH8 Iron-containin 100.0 7.2E-68 1.6E-72 573.3 39.8 375 29-657 2-383 (383)
11 cd08176 LPO Lactadehyde:propan 100.0 6.2E-68 1.3E-72 573.0 38.9 377 22-654 1-377 (377)
12 cd08188 Fe-ADH4 Iron-containin 100.0 1E-67 2.2E-72 571.0 39.6 372 28-654 6-377 (377)
13 cd08189 Fe-ADH5 Iron-containin 100.0 2.6E-67 5.5E-72 567.7 40.0 372 27-653 3-374 (374)
14 PRK15138 aldehyde reductase; P 100.0 3.3E-67 7.1E-72 567.2 39.8 381 19-657 1-387 (387)
15 cd08194 Fe-ADH6 Iron-containin 100.0 4.2E-67 9.1E-72 566.2 40.3 371 28-654 1-375 (375)
16 cd08185 Fe-ADH1 Iron-containin 100.0 1.7E-66 3.7E-71 562.7 39.8 375 28-654 4-380 (380)
17 cd08192 Fe-ADH7 Iron-containin 100.0 1.2E-65 2.5E-70 554.6 38.9 369 28-654 2-370 (370)
18 cd08183 Fe-ADH2 Iron-containin 100.0 1.8E-65 4E-70 553.2 38.2 365 28-654 1-374 (374)
19 cd08187 BDH Butanol dehydrogen 100.0 1.7E-64 3.7E-69 547.2 38.9 376 22-654 2-382 (382)
20 cd08178 AAD_C C-terminal alcoh 100.0 3E-64 6.6E-69 547.7 39.4 374 28-654 1-398 (398)
21 cd08182 HEPD Hydroxyethylphosp 100.0 2.1E-64 4.5E-69 544.3 37.6 365 28-654 1-367 (367)
22 PF00465 Fe-ADH: Iron-containi 100.0 6.1E-65 1.3E-69 548.8 32.9 366 28-649 1-366 (366)
23 cd08179 NADPH_BDH NADPH-depend 100.0 1.2E-63 2.6E-68 539.2 38.8 366 24-658 2-374 (375)
24 cd08551 Fe-ADH iron-containing 100.0 8.2E-63 1.8E-67 532.9 39.5 370 28-653 1-370 (370)
25 cd08181 PPD-like 1,3-propanedi 100.0 4.7E-63 1E-67 530.8 36.3 353 28-654 4-357 (357)
26 TIGR03405 Phn_Fe-ADH phosphona 100.0 2.3E-62 5E-67 524.8 35.3 348 28-642 4-354 (355)
27 COG1979 Uncharacterized oxidor 100.0 8.5E-62 1.9E-66 483.3 35.3 379 19-657 1-384 (384)
28 cd08177 MAR Maleylacetate redu 100.0 3.2E-62 7E-67 520.7 34.6 337 28-654 1-337 (337)
29 PRK13805 bifunctional acetalde 100.0 1.6E-60 3.4E-65 563.1 40.6 380 24-657 457-862 (862)
30 cd08180 PDD 1,3-propanediol de 100.0 2.3E-58 4.9E-63 490.5 34.3 325 28-654 4-332 (332)
31 cd07766 DHQ_Fe-ADH Dehydroquin 100.0 6.2E-57 1.3E-61 480.6 34.3 329 28-652 1-332 (332)
32 cd08184 Fe-ADH3 Iron-containin 100.0 1.4E-56 3E-61 475.9 33.2 334 29-652 2-340 (347)
33 cd08170 GlyDH Glycerol dehydro 100.0 2E-55 4.3E-60 471.9 29.9 340 28-656 1-348 (351)
34 PRK09423 gldA glycerol dehydro 100.0 4.7E-55 1E-59 470.8 30.9 347 21-656 2-355 (366)
35 cd08550 GlyDH-like Glycerol_de 100.0 4.1E-52 8.9E-57 445.4 30.2 339 28-656 1-349 (349)
36 cd08172 GlyDH-like1 Glycerol d 100.0 3.3E-52 7.1E-57 445.8 27.8 335 28-655 2-346 (347)
37 cd08171 GlyDH-like2 Glycerol d 100.0 3.1E-51 6.7E-56 437.8 26.4 337 29-655 2-344 (345)
38 cd08175 G1PDH Glycerol-1-phosp 100.0 9.6E-47 2.1E-51 404.0 23.8 319 29-633 2-332 (348)
39 PRK10586 putative oxidoreducta 100.0 8.5E-45 1.8E-49 388.2 30.6 339 27-656 11-357 (362)
40 cd08173 Gro1PDH Sn-glycerol-1- 100.0 1.8E-44 3.9E-49 384.9 30.3 328 28-655 2-337 (339)
41 cd08549 G1PDH_related Glycerol 100.0 6.8E-40 1.5E-44 348.1 25.9 280 28-367 1-292 (332)
42 COG0371 GldA Glycerol dehydrog 100.0 3.3E-38 7.3E-43 328.7 27.8 174 27-230 7-181 (360)
43 cd08174 G1PDH-like Glycerol-1- 100.0 2.5E-38 5.4E-43 336.7 25.1 276 28-367 1-285 (331)
44 PRK00843 egsA NAD(P)-dependent 100.0 1.4E-36 3.1E-41 324.9 27.8 283 23-367 7-299 (350)
45 PRK00002 aroB 3-dehydroquinate 100.0 5.4E-33 1.2E-37 298.5 21.3 271 28-367 9-300 (358)
46 cd08195 DHQS Dehydroquinate sy 100.0 1E-32 2.2E-37 295.0 21.0 275 29-367 2-293 (345)
47 TIGR01357 aroB 3-dehydroquinat 100.0 1.5E-32 3.3E-37 293.8 22.3 267 30-367 2-290 (344)
48 cd08197 DOIS 2-deoxy-scyllo-in 100.0 2.8E-32 6.1E-37 290.8 22.5 272 30-367 3-291 (355)
49 PF13685 Fe-ADH_2: Iron-contai 100.0 6.7E-33 1.5E-37 279.3 15.7 247 32-339 1-250 (250)
50 cd08169 DHQ-like Dehydroquinat 100.0 7.9E-32 1.7E-36 286.9 22.3 266 29-367 2-290 (344)
51 PRK06203 aroB 3-dehydroquinate 100.0 4.9E-31 1.1E-35 284.0 24.3 271 28-367 13-320 (389)
52 PLN02834 3-dehydroquinate synt 100.0 1.3E-30 2.7E-35 283.9 24.2 265 28-367 78-371 (433)
53 cd08198 DHQS-like2 Dehydroquin 100.0 7.3E-30 1.6E-34 271.2 21.9 173 29-225 2-194 (369)
54 cd08199 EEVS 2-epi-5-epi-valio 100.0 2E-29 4.4E-34 269.0 24.0 171 29-225 2-183 (354)
55 cd08196 DHQS-like1 Dehydroquin 100.0 8.6E-29 1.9E-33 262.6 21.7 266 29-367 2-282 (346)
56 COG0337 AroB 3-dehydroquinate 100.0 2.9E-28 6.3E-33 252.5 19.8 274 29-368 13-302 (360)
57 PRK14021 bifunctional shikimat 100.0 1.1E-27 2.3E-32 269.4 23.9 284 26-367 186-485 (542)
58 PRK13951 bifunctional shikimat 99.9 5.8E-26 1.3E-30 251.3 20.2 240 28-351 171-418 (488)
59 cd08174 G1PDH-like Glycerol-1- 99.9 1.2E-25 2.5E-30 239.5 13.4 221 371-654 99-331 (331)
60 PF01761 DHQ_synthase: 3-dehyd 99.9 6.9E-22 1.5E-26 200.8 11.8 218 83-368 2-238 (260)
61 cd08549 G1PDH_related Glycerol 99.9 1.9E-21 4.1E-26 206.9 13.2 199 371-630 104-312 (332)
62 PRK00843 egsA NAD(P)-dependent 99.8 4.5E-20 9.8E-25 197.8 16.4 225 371-655 111-346 (350)
63 cd08184 Fe-ADH3 Iron-containin 99.7 5.6E-18 1.2E-22 180.5 8.2 94 370-484 122-215 (347)
64 cd08170 GlyDH Glycerol dehydro 99.7 1.7E-17 3.6E-22 178.4 6.7 104 372-492 102-205 (351)
65 cd08172 GlyDH-like1 Glycerol d 99.7 2.1E-17 4.5E-22 177.3 7.3 122 372-510 101-229 (347)
66 COG1454 EutG Alcohol dehydroge 99.7 5.4E-17 1.2E-21 172.1 8.5 101 255-368 209-309 (377)
67 PRK15138 aldehyde reductase; P 99.7 3.1E-16 6.6E-21 170.2 12.0 76 369-444 128-203 (387)
68 cd08550 GlyDH-like Glycerol_de 99.7 6.5E-17 1.4E-21 173.6 6.5 104 372-491 102-205 (349)
69 KOG3857|consensus 99.7 2.5E-16 5.5E-21 158.6 9.6 125 243-367 263-387 (465)
70 cd08189 Fe-ADH5 Iron-containin 99.6 1.9E-15 4.1E-20 163.8 13.0 77 370-446 125-201 (374)
71 cd08176 LPO Lactadehyde:propan 99.6 1.3E-15 2.7E-20 165.3 9.2 78 370-447 126-203 (377)
72 cd08171 GlyDH-like2 Glycerol d 99.6 8.5E-16 1.9E-20 164.6 7.8 102 372-491 103-204 (345)
73 PRK10586 putative oxidoreducta 99.6 1.5E-15 3.3E-20 162.9 9.4 131 371-519 110-248 (362)
74 PF00465 Fe-ADH: Iron-containi 99.6 5.8E-16 1.3E-20 167.5 2.0 78 370-447 120-197 (366)
75 cd08551 Fe-ADH iron-containing 99.6 8.1E-15 1.8E-19 158.8 10.6 78 370-447 121-198 (370)
76 cd08179 NADPH_BDH NADPH-depend 99.5 3.3E-15 7.2E-20 161.9 5.1 75 370-444 125-199 (375)
77 cd08191 HHD 6-hydroxyhexanoate 99.5 1.7E-14 3.7E-19 156.9 9.9 109 246-367 208-316 (386)
78 cd08190 HOT Hydroxyacid-oxoaci 99.5 2.4E-14 5.3E-19 156.8 10.7 120 248-367 221-340 (414)
79 PRK15454 ethanol dehydrogenase 99.5 3.7E-14 8E-19 154.3 9.9 98 256-366 230-327 (395)
80 cd08177 MAR Maleylacetate redu 99.5 3.9E-14 8.5E-19 151.3 9.6 98 256-366 180-277 (337)
81 cd08187 BDH Butanol dehydrogen 99.5 8.4E-15 1.8E-19 159.1 4.1 75 370-444 127-201 (382)
82 PRK09860 putative alcohol dehy 99.5 4.3E-14 9.2E-19 153.4 8.9 99 255-366 211-309 (383)
83 cd08180 PDD 1,3-propanediol de 99.5 1.7E-14 3.7E-19 153.8 5.2 77 370-446 108-184 (332)
84 cd08193 HVD 5-hydroxyvalerate 99.5 5.5E-14 1.2E-18 152.5 8.7 101 254-367 205-305 (376)
85 cd08186 Fe-ADH8 Iron-containin 99.5 8.1E-14 1.8E-18 151.4 9.6 100 255-366 208-307 (383)
86 TIGR02638 lactal_redase lactal 99.5 6.5E-14 1.4E-18 152.0 8.5 98 256-366 212-309 (379)
87 TIGR01357 aroB 3-dehydroquinat 99.5 1.9E-13 4.2E-18 146.5 11.4 192 371-630 107-309 (344)
88 cd08188 Fe-ADH4 Iron-containin 99.5 9.4E-14 2E-18 150.6 9.0 98 257-367 210-307 (377)
89 TIGR03405 Phn_Fe-ADH phosphona 99.5 1.7E-13 3.8E-18 147.3 9.6 96 257-365 209-304 (355)
90 PRK06203 aroB 3-dehydroquinate 99.4 3.7E-13 8E-18 145.6 12.0 191 371-608 137-348 (389)
91 cd08194 Fe-ADH6 Iron-containin 99.4 1.5E-13 3.2E-18 149.1 8.8 99 256-367 204-302 (375)
92 cd08182 HEPD Hydroxyethylphosp 99.4 2.2E-13 4.7E-18 147.5 8.3 113 256-381 205-327 (367)
93 cd08181 PPD-like 1,3-propanedi 99.4 4.4E-13 9.5E-18 144.4 10.1 96 257-366 207-302 (357)
94 cd08178 AAD_C C-terminal alcoh 99.4 5.2E-13 1.1E-17 145.9 9.9 99 256-367 213-326 (398)
95 cd08183 Fe-ADH2 Iron-containin 99.4 5.2E-13 1.1E-17 144.7 8.4 93 256-361 203-295 (374)
96 cd08185 Fe-ADH1 Iron-containin 99.4 8.1E-13 1.7E-17 143.6 9.5 96 256-363 212-307 (380)
97 cd08192 Fe-ADH7 Iron-containin 99.4 7.5E-13 1.6E-17 143.4 8.8 97 256-366 209-305 (370)
98 cd07766 DHQ_Fe-ADH Dehydroquin 99.4 3.4E-13 7.5E-18 144.0 5.4 75 371-447 104-178 (332)
99 PRK10624 L-1,2-propanediol oxi 99.4 7.5E-13 1.6E-17 143.9 8.0 74 281-367 236-309 (382)
100 PRK09423 gldA glycerol dehydro 99.4 2.6E-13 5.6E-18 146.7 4.3 75 372-447 109-183 (366)
101 COG1979 Uncharacterized oxidor 99.3 7.2E-13 1.6E-17 133.8 4.7 77 368-444 124-200 (384)
102 cd08175 G1PDH Glycerol-1-phosp 99.3 9.3E-13 2E-17 141.5 3.0 69 371-447 104-172 (348)
103 PRK00002 aroB 3-dehydroquinate 99.3 2.4E-11 5.1E-16 131.0 12.1 222 371-657 118-356 (358)
104 PRK13805 bifunctional acetalde 99.2 1.8E-11 3.8E-16 146.1 10.0 98 256-366 674-786 (862)
105 COG0371 GldA Glycerol dehydrog 99.2 3E-11 6.4E-16 127.1 9.6 238 371-656 108-354 (360)
106 PLN02834 3-dehydroquinate synt 99.2 1.7E-10 3.7E-15 126.5 14.3 212 371-655 189-427 (433)
107 cd08195 DHQS Dehydroquinate sy 99.2 2.2E-11 4.8E-16 130.6 5.4 195 371-629 111-310 (345)
108 PF13685 Fe-ADH_2: Iron-contai 99.1 3.6E-11 7.7E-16 121.8 4.2 148 372-555 100-250 (250)
109 cd08197 DOIS 2-deoxy-scyllo-in 99.1 5.6E-10 1.2E-14 119.7 10.9 70 371-444 110-182 (355)
110 cd08169 DHQ-like Dehydroquinat 99.0 2E-09 4.3E-14 115.2 11.4 69 371-442 109-179 (344)
111 cd08198 DHQS-like2 Dehydroquin 98.9 5.2E-09 1.1E-13 112.1 11.1 69 371-441 125-194 (369)
112 cd08199 EEVS 2-epi-5-epi-valio 98.9 1.1E-08 2.3E-13 109.9 11.3 68 371-441 114-183 (354)
113 cd08173 Gro1PDH Sn-glycerol-1- 98.8 3.3E-09 7.1E-14 113.7 3.9 68 372-443 103-170 (339)
114 PRK13951 bifunctional shikimat 98.8 4.4E-08 9.5E-13 109.3 11.7 175 370-615 262-444 (488)
115 PRK14021 bifunctional shikimat 98.6 6.2E-07 1.3E-11 101.7 14.2 69 370-441 294-364 (542)
116 cd08196 DHQS-like1 Dehydroquin 98.4 1.8E-06 3.8E-11 92.4 12.1 68 371-441 102-171 (346)
117 COG0337 AroB 3-dehydroquinate 98.2 1.1E-05 2.5E-10 84.8 13.0 220 371-658 120-359 (360)
118 PF01761 DHQ_synthase: 3-dehyd 97.7 8.8E-05 1.9E-09 76.0 7.9 69 370-441 54-124 (260)
119 PF00731 AIRC: AIR carboxylase 96.8 0.0074 1.6E-07 56.3 9.4 90 52-168 2-91 (150)
120 TIGR01162 purE phosphoribosyla 96.4 0.021 4.6E-07 53.4 9.2 86 54-166 2-87 (156)
121 COG0041 PurE Phosphoribosylcar 95.2 0.11 2.4E-06 47.9 8.4 86 52-165 4-90 (162)
122 PLN02958 diacylglycerol kinase 92.6 1.2 2.6E-05 50.1 12.3 108 39-168 99-212 (481)
123 PRK13054 lipid kinase; Reviewe 92.4 0.89 1.9E-05 47.8 10.4 72 51-126 4-76 (300)
124 PRK00286 xseA exodeoxyribonucl 92.4 0.91 2E-05 50.5 11.0 71 50-123 135-209 (438)
125 PRK13055 putative lipid kinase 92.2 0.84 1.8E-05 48.9 10.1 73 51-126 3-79 (334)
126 TIGR00237 xseA exodeoxyribonuc 91.9 1.3 2.9E-05 49.1 11.5 72 51-125 130-206 (432)
127 PLN02948 phosphoribosylaminoim 91.8 0.77 1.7E-05 52.9 9.7 89 51-166 411-499 (577)
128 PRK13337 putative lipid kinase 91.5 1.2 2.5E-05 47.1 10.1 73 51-127 2-78 (304)
129 PF00781 DAGK_cat: Diacylglyce 91.4 1.1 2.3E-05 40.9 8.4 71 52-126 1-74 (130)
130 PF02601 Exonuc_VII_L: Exonucl 91.1 1.1 2.4E-05 47.6 9.5 72 51-125 15-94 (319)
131 TIGR00147 lipid kinase, YegS/R 91.0 1.3 2.8E-05 46.4 9.7 73 51-127 2-78 (293)
132 COG1570 XseA Exonuclease VII, 90.5 1.4 3.1E-05 48.1 9.6 71 51-124 136-211 (440)
133 cd06366 PBP1_GABAb_receptor Li 90.3 2.6 5.7E-05 44.9 11.6 91 39-131 124-214 (350)
134 cd06350 PBP1_GPCR_family_C_lik 90.2 2.2 4.8E-05 45.3 11.0 90 40-131 150-239 (348)
135 PRK11914 diacylglycerol kinase 90.1 2.9 6.3E-05 44.0 11.6 76 46-125 4-83 (306)
136 PF01513 NAD_kinase: ATP-NAD k 90.0 0.13 2.7E-06 53.9 1.1 76 52-127 1-97 (285)
137 TIGR03702 lip_kinase_YegS lipi 89.5 1.8 4E-05 45.3 9.4 70 53-126 2-72 (293)
138 PRK13059 putative lipid kinase 89.5 2 4.4E-05 45.0 9.7 71 51-126 2-76 (295)
139 cd06346 PBP1_ABC_ligand_bindin 87.2 3.5 7.6E-05 43.2 9.8 89 39-131 126-214 (312)
140 PRK01231 ppnK inorganic polyph 87.0 1.6 3.4E-05 45.9 6.8 76 50-126 4-82 (295)
141 COG3199 Predicted inorganic po 86.8 6.3 0.00014 41.6 10.9 82 38-126 35-120 (355)
142 PRK02155 ppnK NAD(+)/NADH kina 86.3 1.9 4E-05 45.3 6.9 79 49-127 4-84 (291)
143 PRK13057 putative lipid kinase 84.8 6.5 0.00014 41.0 10.2 56 66-126 14-70 (287)
144 COG0541 Ffh Signal recognition 84.4 4.3 9.3E-05 44.3 8.6 76 33-112 109-187 (451)
145 PRK02645 ppnK inorganic polyph 83.4 4 8.6E-05 43.1 7.9 73 50-126 3-77 (305)
146 PRK14077 pnk inorganic polypho 83.3 2.9 6.2E-05 43.8 6.7 75 50-127 10-85 (287)
147 cd06374 PBP1_mGluR_groupI Liga 83.2 7.1 0.00015 43.8 10.3 86 41-126 177-262 (472)
148 cd06362 PBP1_mGluR Ligand bind 83.1 11 0.00024 41.9 11.8 89 40-130 162-251 (452)
149 COG0683 LivK ABC-type branched 82.8 5.9 0.00013 42.9 9.2 87 41-131 138-225 (366)
150 cd06268 PBP1_ABC_transporter_L 81.7 11 0.00023 38.3 10.3 77 39-117 123-200 (298)
151 PF13458 Peripla_BP_6: Peripla 81.3 7.3 0.00016 41.1 9.2 89 39-131 123-212 (343)
152 cd06334 PBP1_ABC_ligand_bindin 81.3 12 0.00027 40.1 11.0 88 40-131 125-217 (351)
153 PRK03378 ppnK inorganic polyph 81.1 3.4 7.4E-05 43.3 6.3 77 50-126 5-83 (292)
154 cd06363 PBP1_Taste_receptor Li 81.1 7.3 0.00016 42.7 9.3 86 39-126 165-251 (410)
155 TIGR02990 ectoine_eutA ectoine 81.0 17 0.00037 36.9 11.1 88 41-131 111-206 (239)
156 cd06267 PBP1_LacI_sugar_bindin 80.9 8 0.00017 38.5 8.9 89 39-127 105-197 (264)
157 cd06349 PBP1_ABC_ligand_bindin 80.8 9.7 0.00021 40.3 9.9 88 40-131 124-212 (340)
158 cd06333 PBP1_ABC-type_HAAT_lik 80.6 20 0.00043 37.4 12.1 77 40-118 123-199 (312)
159 PF13433 Peripla_BP_5: Peripla 80.4 16 0.00035 39.3 11.1 78 46-127 130-210 (363)
160 cd06364 PBP1_CaSR Ligand-bindi 80.0 13 0.00028 42.3 11.0 88 41-130 178-265 (510)
161 PRK03372 ppnK inorganic polyph 79.9 4.1 9E-05 42.9 6.5 76 50-127 5-93 (306)
162 cd06339 PBP1_YraM_LppC_lipopro 79.6 9.1 0.0002 40.7 9.2 78 39-118 113-211 (336)
163 cd06341 PBP1_ABC_ligand_bindin 79.4 7.1 0.00015 41.3 8.3 86 38-125 120-207 (341)
164 PRK03501 ppnK inorganic polyph 79.4 5.4 0.00012 41.2 7.0 57 51-127 3-60 (264)
165 TIGR02482 PFKA_ATP 6-phosphofr 79.3 11 0.00024 39.7 9.4 52 92-167 76-127 (301)
166 cd06357 PBP1_AmiC Periplasmic 79.2 12 0.00026 40.2 10.1 89 40-130 122-210 (360)
167 cd04509 PBP1_ABC_transporter_G 78.9 15 0.00032 37.3 10.2 86 39-128 125-210 (299)
168 cd06336 PBP1_ABC_ligand_bindin 78.8 9.8 0.00021 40.6 9.2 75 41-117 129-203 (347)
169 cd06345 PBP1_ABC_ligand_bindin 78.3 10 0.00022 40.3 9.1 80 48-131 142-221 (344)
170 cd06328 PBP1_SBP_like_2 Peripl 77.9 13 0.00028 39.5 9.7 84 41-128 128-211 (333)
171 PF03808 Glyco_tran_WecB: Glyc 77.1 12 0.00027 35.8 8.4 82 30-118 29-113 (172)
172 cd06375 PBP1_mGluR_groupII Lig 77.0 11 0.00023 42.3 9.1 88 41-130 165-253 (458)
173 cd06326 PBP1_STKc_like Type I 76.8 15 0.00032 38.7 9.8 84 39-124 125-209 (336)
174 cd06338 PBP1_ABC_ligand_bindin 76.8 22 0.00047 37.6 11.1 87 40-130 129-217 (345)
175 PRK04885 ppnK inorganic polyph 76.7 5.9 0.00013 40.9 6.4 54 52-127 2-56 (265)
176 cd06342 PBP1_ABC_LIVBP_like Ty 76.6 21 0.00045 37.4 10.9 87 40-130 124-211 (334)
177 PF00365 PFK: Phosphofructokin 76.2 5.2 0.00011 41.7 5.9 52 92-167 77-128 (282)
178 PF00205 TPP_enzyme_M: Thiamin 76.0 5.2 0.00011 36.6 5.2 75 39-117 2-87 (137)
179 KOG0780|consensus 75.4 13 0.00028 40.1 8.4 82 33-118 110-194 (483)
180 PRK04539 ppnK inorganic polyph 75.3 9.1 0.0002 40.2 7.4 76 50-127 5-89 (296)
181 cd06330 PBP1_Arsenic_SBP_like 75.0 12 0.00026 39.7 8.6 87 40-128 126-214 (346)
182 cd06379 PBP1_iGluR_NMDA_NR1 N- 75.0 15 0.00032 39.7 9.3 87 41-131 145-235 (377)
183 cd06360 PBP1_alkylbenzenes_lik 74.8 12 0.00025 39.5 8.3 89 39-131 123-211 (336)
184 cd06352 PBP1_NPR_GC_like Ligan 73.3 22 0.00047 38.4 10.2 86 40-128 127-213 (389)
185 COG0552 FtsY Signal recognitio 73.3 18 0.0004 38.3 8.9 80 34-124 149-231 (340)
186 cd06365 PBP1_Pheromone_recepto 73.1 17 0.00036 40.8 9.4 92 21-116 147-240 (469)
187 PRK03202 6-phosphofructokinase 73.0 17 0.00037 38.6 8.9 50 92-166 78-127 (320)
188 PF06506 PrpR_N: Propionate ca 72.8 15 0.00033 35.2 7.9 67 47-125 75-141 (176)
189 cd01391 Periplasmic_Binding_Pr 72.7 28 0.00061 34.1 10.2 88 39-127 113-202 (269)
190 PRK15404 leucine ABC transport 72.4 24 0.00051 38.2 10.1 86 41-130 151-237 (369)
191 cd06329 PBP1_SBP_like_3 Peripl 72.2 21 0.00046 37.8 9.6 88 40-131 132-223 (342)
192 COG1691 NCAIR mutase (PurE)-re 72.1 38 0.00082 33.8 10.1 81 63-169 129-209 (254)
193 cd06355 PBP1_FmdD_like Peripla 72.1 26 0.00056 37.4 10.3 84 40-127 122-206 (348)
194 PRK15424 propionate catabolism 71.8 19 0.00041 41.2 9.4 81 34-127 93-173 (538)
195 PRK01911 ppnK inorganic polyph 71.7 9.4 0.0002 40.0 6.5 74 52-127 2-85 (292)
196 PRK03708 ppnK inorganic polyph 71.6 11 0.00024 39.2 6.9 71 52-124 2-75 (277)
197 cd06335 PBP1_ABC_ligand_bindin 71.5 17 0.00037 38.7 8.7 87 40-130 127-214 (347)
198 cd06356 PBP1_Amide_Urea_BP_lik 71.2 30 0.00064 36.6 10.4 87 40-130 122-208 (334)
199 COG1597 LCB5 Sphingosine kinas 71.1 34 0.00073 36.0 10.6 65 51-119 3-70 (301)
200 cd06358 PBP1_NHase Type I peri 71.0 31 0.00068 36.4 10.5 83 41-127 122-205 (333)
201 TIGR03407 urea_ABC_UrtA urea A 70.9 19 0.00041 38.6 8.9 84 41-128 124-208 (359)
202 cd06533 Glyco_transf_WecG_TagA 70.7 21 0.00045 34.2 8.2 82 31-119 28-112 (171)
203 cd06361 PBP1_GPC6A_like Ligand 69.8 22 0.00047 39.1 9.2 103 22-130 148-255 (403)
204 COG3340 PepE Peptidase E [Amin 69.7 29 0.00064 34.4 8.8 77 41-126 24-102 (224)
205 PRK10310 PTS system galactitol 69.6 12 0.00027 32.0 5.7 54 51-114 3-57 (94)
206 cd06340 PBP1_ABC_ligand_bindin 69.4 12 0.00027 39.8 7.1 78 49-130 143-220 (347)
207 PRK02649 ppnK inorganic polyph 69.3 11 0.00024 39.8 6.4 75 51-126 2-88 (305)
208 cd01537 PBP1_Repressors_Sugar_ 69.3 27 0.00059 34.6 9.2 86 39-126 107-197 (264)
209 cd00363 PFK Phosphofructokinas 69.1 13 0.00028 39.9 6.9 55 92-165 77-131 (338)
210 TIGR02329 propionate_PrpR prop 69.0 21 0.00046 40.7 9.0 80 34-126 83-162 (526)
211 cd06327 PBP1_SBP_like_1 Peripl 68.8 15 0.00032 38.8 7.5 86 41-130 126-211 (334)
212 TIGR00315 cdhB CO dehydrogenas 68.5 17 0.00037 34.6 6.9 76 39-118 18-111 (162)
213 PF02541 Ppx-GppA: Ppx/GppA ph 68.1 5 0.00011 41.8 3.6 81 37-119 43-124 (285)
214 PLN02929 NADH kinase 67.6 15 0.00031 38.7 6.8 49 66-126 35-84 (301)
215 cd06343 PBP1_ABC_ligand_bindin 67.3 26 0.00057 37.3 9.1 87 40-130 133-220 (362)
216 cd06269 PBP1_glutamate_recepto 67.2 39 0.00084 34.1 10.0 77 39-117 129-205 (298)
217 cd06348 PBP1_ABC_ligand_bindin 67.1 29 0.00064 36.7 9.4 84 43-130 128-213 (344)
218 PF00532 Peripla_BP_1: Peripla 67.0 36 0.00078 35.2 9.8 88 39-126 107-199 (279)
219 cd06331 PBP1_AmiC_like Type I 66.9 24 0.00051 37.3 8.5 87 40-130 122-208 (333)
220 cd06347 PBP1_ABC_ligand_bindin 66.9 44 0.00096 34.9 10.6 87 40-130 124-212 (334)
221 TIGR02483 PFK_mixed phosphofru 66.5 17 0.00037 38.7 7.2 49 93-166 80-128 (324)
222 cd06371 PBP1_sensory_GC_DEF_li 66.1 24 0.00053 38.3 8.6 74 41-116 123-197 (382)
223 cd06298 PBP1_CcpA_like Ligand- 66.1 25 0.00055 35.3 8.3 89 39-127 105-197 (268)
224 cd00763 Bacterial_PFK Phosphof 66.0 35 0.00075 36.3 9.3 50 91-165 76-125 (317)
225 cd06380 PBP1_iGluR_AMPA N-term 65.2 63 0.0014 34.8 11.6 100 20-130 103-204 (382)
226 PRK00861 putative lipid kinase 64.9 43 0.00093 35.1 9.9 71 51-126 3-77 (300)
227 PRK14071 6-phosphofructokinase 64.1 18 0.0004 39.1 7.0 50 93-166 93-142 (360)
228 PRK14072 6-phosphofructokinase 64.0 20 0.00043 39.6 7.3 54 92-165 88-142 (416)
229 TIGR03669 urea_ABC_arch urea A 63.9 47 0.001 36.0 10.3 84 39-126 122-205 (374)
230 cd06344 PBP1_ABC_ligand_bindin 63.8 39 0.00084 35.6 9.5 87 39-129 122-211 (332)
231 PF04007 DUF354: Protein of un 63.7 28 0.00061 37.2 8.2 73 38-118 16-94 (335)
232 PRK14075 pnk inorganic polypho 63.6 22 0.00047 36.6 7.1 57 53-125 3-60 (256)
233 cd06370 PBP1_Speract_GC_like L 62.9 43 0.00092 36.6 9.8 85 41-128 127-216 (404)
234 PRK09590 celB cellobiose phosp 62.4 15 0.00033 32.1 4.9 55 51-113 2-56 (104)
235 cd06337 PBP1_ABC_ligand_bindin 62.3 43 0.00094 35.8 9.6 88 39-130 133-224 (357)
236 PLN02935 Bifunctional NADH kin 62.3 21 0.00045 40.1 7.0 77 50-126 194-282 (508)
237 PLN02727 NAD kinase 62.0 24 0.00051 42.4 7.7 78 49-127 677-764 (986)
238 COG2515 Acd 1-aminocyclopropan 61.2 1.1E+02 0.0024 32.0 11.5 61 67-129 134-201 (323)
239 PRK00561 ppnK inorganic polyph 61.1 20 0.00043 36.9 6.3 51 52-126 2-53 (259)
240 TIGR00853 pts-lac PTS system, 61.0 21 0.00046 30.6 5.5 52 51-112 4-55 (95)
241 cd06292 PBP1_LacI_like_10 Liga 60.6 41 0.00089 33.9 8.7 89 39-127 111-201 (273)
242 cd05565 PTS_IIB_lactose PTS_II 60.3 61 0.0013 28.1 8.2 33 52-84 2-34 (99)
243 PRK12446 undecaprenyldiphospho 60.0 61 0.0013 34.9 10.2 75 41-123 21-107 (352)
244 TIGR03706 exo_poly_only exopol 59.9 22 0.00048 37.3 6.6 80 38-120 58-138 (300)
245 cd06376 PBP1_mGluR_groupIII Li 59.6 42 0.00092 37.4 9.2 86 41-128 163-250 (463)
246 PRK05282 (alpha)-aspartyl dipe 58.9 60 0.0013 32.8 9.2 84 32-127 11-98 (233)
247 cd01537 PBP1_Repressors_Sugar_ 58.9 80 0.0017 31.1 10.4 49 66-117 17-65 (264)
248 TIGR02477 PFKA_PPi diphosphate 58.8 21 0.00045 40.8 6.4 56 91-165 145-200 (539)
249 COG1794 RacX Aspartate racemas 58.7 39 0.00084 33.8 7.5 73 38-113 105-194 (230)
250 cd06368 PBP1_iGluR_non_NMDA_li 58.5 40 0.00086 35.2 8.4 81 41-127 118-198 (324)
251 PF02310 B12-binding: B12 bind 58.2 59 0.0013 28.5 8.3 80 38-124 17-96 (121)
252 PLN02204 diacylglycerol kinase 58.1 55 0.0012 37.7 9.6 76 50-126 159-238 (601)
253 cd06284 PBP1_LacI_like_6 Ligan 58.1 54 0.0012 32.8 9.0 90 38-127 103-196 (267)
254 PRK14076 pnk inorganic polypho 57.9 29 0.00062 40.1 7.6 96 30-126 266-368 (569)
255 cd01575 PBP1_GntR Ligand-bindi 57.7 61 0.0013 32.4 9.4 89 39-127 105-197 (268)
256 PF13377 Peripla_BP_3: Peripla 57.6 38 0.00083 31.1 7.2 84 43-126 2-87 (160)
257 COG3962 Acetolactate synthase 57.4 27 0.00058 38.5 6.6 34 50-83 229-262 (617)
258 PF11965 DUF3479: Domain of un 57.4 35 0.00075 32.5 6.7 73 52-131 2-80 (164)
259 PLN03028 pyrophosphate--fructo 57.4 25 0.00055 40.6 6.8 56 90-165 156-212 (610)
260 PF02602 HEM4: Uroporphyrinoge 57.2 43 0.00093 33.2 8.0 72 36-113 102-174 (231)
261 cd06367 PBP1_iGluR_NMDA N-term 56.9 30 0.00066 37.0 7.3 87 41-130 127-215 (362)
262 TIGR00696 wecB_tagA_cpsF bacte 56.9 53 0.0011 31.7 8.1 79 32-118 31-112 (177)
263 cd06288 PBP1_sucrose_transcrip 56.6 53 0.0012 32.9 8.7 89 39-127 105-197 (269)
264 TIGR00177 molyb_syn molybdenum 56.5 28 0.00062 32.2 6.0 60 68-130 30-91 (144)
265 PRK10854 exopolyphosphatase; P 56.5 13 0.00029 42.2 4.5 81 37-119 68-149 (513)
266 PLN02251 pyrophosphate-depende 56.4 24 0.00053 40.4 6.5 55 92-165 175-229 (568)
267 PRK03692 putative UDP-N-acetyl 56.2 43 0.00092 34.2 7.6 80 32-118 88-169 (243)
268 PRK11031 guanosine pentaphosph 56.0 17 0.00037 41.2 5.2 81 37-119 63-144 (496)
269 PRK12361 hypothetical protein; 55.8 57 0.0012 37.5 9.5 88 34-126 223-317 (547)
270 cd00765 Pyrophosphate_PFK Phos 55.7 24 0.00053 40.2 6.3 55 92-165 151-205 (550)
271 PLN02331 phosphoribosylglycina 55.2 70 0.0015 31.7 8.8 84 32-121 6-92 (207)
272 PRK07085 diphosphate--fructose 55.0 29 0.00062 39.8 6.8 56 91-165 148-203 (555)
273 cd06294 PBP1_ycjW_transcriptio 54.3 66 0.0014 32.2 8.9 87 39-127 111-203 (270)
274 TIGR02667 moaB_proteo molybden 54.1 59 0.0013 30.9 7.9 51 68-120 25-76 (163)
275 cd06332 PBP1_aromatic_compound 54.0 65 0.0014 33.6 9.1 86 38-130 122-207 (333)
276 COG1609 PurR Transcriptional r 54.0 2.2E+02 0.0048 30.2 13.2 126 66-224 76-204 (333)
277 PF06792 UPF0261: Uncharacteri 53.8 91 0.002 34.1 10.0 42 102-165 88-129 (403)
278 cd00886 MogA_MoaB MogA_MoaB fa 53.8 26 0.00056 32.8 5.3 51 68-120 23-74 (152)
279 PRK02399 hypothetical protein; 53.5 1.3E+02 0.0029 32.9 11.1 44 102-167 90-133 (406)
280 TIGR00216 ispH_lytB (E)-4-hydr 53.5 71 0.0015 33.3 8.8 77 51-131 154-232 (280)
281 PRK02877 hypothetical protein; 53.4 10 0.00022 33.4 2.2 60 55-114 20-80 (106)
282 TIGR00114 lumazine-synth 6,7-d 53.3 44 0.00096 30.9 6.5 60 52-115 2-67 (138)
283 TIGR01481 ccpA catabolite cont 53.1 71 0.0015 33.4 9.2 89 39-127 165-256 (329)
284 cd06389 PBP1_iGluR_AMPA_GluR2 53.0 1E+02 0.0022 33.3 10.5 85 39-126 107-193 (370)
285 PF10137 TIR-like: Predicted n 52.5 43 0.00094 30.4 6.3 57 52-114 1-57 (125)
286 cd06285 PBP1_LacI_like_7 Ligan 52.4 70 0.0015 32.0 8.8 88 40-127 104-195 (265)
287 PRK12855 hypothetical protein; 52.0 8.8 0.00019 33.6 1.6 26 89-114 55-80 (103)
288 cd06271 PBP1_AglR_RafR_like Li 52.0 73 0.0016 31.8 8.8 89 39-127 109-201 (268)
289 PRK07586 hypothetical protein; 51.2 46 0.00099 37.8 7.8 76 37-117 186-272 (514)
290 PRK12474 hypothetical protein; 51.0 41 0.00088 38.3 7.4 75 37-117 190-276 (518)
291 PRK02231 ppnK inorganic polyph 50.8 41 0.0009 34.9 6.6 57 68-126 3-62 (272)
292 PRK09189 uroporphyrinogen-III 50.8 39 0.00084 34.0 6.5 76 34-117 100-180 (240)
293 cd06325 PBP1_ABC_uncharacteriz 50.7 1.8E+02 0.0039 29.3 11.5 85 39-128 118-205 (281)
294 PRK01119 hypothetical protein; 50.6 9.1 0.0002 33.7 1.5 26 89-114 55-80 (106)
295 cd06270 PBP1_GalS_like Ligand 50.6 90 0.0019 31.3 9.2 88 39-126 105-196 (268)
296 PRK00061 ribH 6,7-dimethyl-8-r 50.5 47 0.001 31.3 6.4 61 51-115 13-79 (154)
297 PRK06555 pyrophosphate--fructo 50.4 39 0.00084 37.1 6.6 53 93-165 98-151 (403)
298 PRK11041 DNA-binding transcrip 50.2 75 0.0016 32.7 8.8 89 39-127 141-233 (309)
299 TIGR03863 PQQ_ABC_bind ABC tra 49.9 39 0.00085 36.3 6.6 93 21-117 103-197 (347)
300 COG0393 Uncharacterized conser 49.5 10 0.00022 33.2 1.6 59 56-114 21-80 (108)
301 PRK00967 hypothetical protein; 49.3 9 0.00019 33.7 1.3 25 90-114 56-80 (105)
302 PRK09432 metF 5,10-methylenete 48.6 1E+02 0.0022 32.4 9.2 97 21-119 24-122 (296)
303 TIGR00035 asp_race aspartate r 48.6 48 0.001 33.2 6.7 42 38-82 105-146 (229)
304 cd03786 GT1_UDP-GlcNAc_2-Epime 48.6 2.3E+02 0.005 29.9 12.5 75 41-117 18-98 (363)
305 cd06259 YdcF-like YdcF-like. Y 48.4 2.1E+02 0.0045 26.1 10.6 101 31-131 4-118 (150)
306 PLN02404 6,7-dimethyl-8-ribity 48.3 57 0.0012 30.3 6.4 61 51-115 8-74 (141)
307 PLN02884 6-phosphofructokinase 47.9 45 0.00098 36.7 6.7 52 95-165 131-182 (411)
308 cd06273 PBP1_GntR_like_1 This 47.8 87 0.0019 31.3 8.6 88 39-126 105-197 (268)
309 cd01391 Periplasmic_Binding_Pr 47.8 1.6E+02 0.0034 28.6 10.4 51 66-119 18-70 (269)
310 COG0205 PfkA 6-phosphofructoki 47.7 1E+02 0.0022 33.1 9.2 56 86-165 73-128 (347)
311 cd06299 PBP1_LacI_like_13 Liga 46.9 90 0.0019 31.2 8.5 89 39-127 105-195 (265)
312 cd02067 B12-binding B12 bindin 46.9 1E+02 0.0022 27.1 7.9 74 41-121 19-93 (119)
313 cd05564 PTS_IIB_chitobiose_lic 46.8 47 0.001 28.5 5.4 52 52-113 1-52 (96)
314 PF00448 SRP54: SRP54-type pro 46.6 84 0.0018 30.8 7.8 84 34-121 11-98 (196)
315 cd07038 TPP_PYR_PDC_IPDC_like 46.6 2.3E+02 0.0049 26.7 10.6 92 41-165 3-95 (162)
316 cd06317 PBP1_ABC_sugar_binding 46.5 1.5E+02 0.0033 29.6 10.2 87 41-127 114-207 (275)
317 cd00764 Eukaryotic_PFK Phospho 46.4 46 0.001 39.6 6.9 58 93-168 464-521 (762)
318 PRK12360 4-hydroxy-3-methylbut 46.1 95 0.0021 32.4 8.4 77 51-131 157-233 (281)
319 PRK02261 methylaspartate mutas 45.7 1.1E+02 0.0024 28.2 8.0 53 68-121 44-97 (137)
320 PTZ00287 6-phosphofructokinase 45.6 72 0.0016 40.3 8.5 39 92-130 913-951 (1419)
321 smart00852 MoCF_biosynth Proba 45.5 56 0.0012 29.7 6.1 59 68-129 21-81 (135)
322 PRK06154 hypothetical protein; 45.4 71 0.0015 36.8 8.2 44 37-82 203-246 (565)
323 PRK00945 acetyl-CoA decarbonyl 45.3 78 0.0017 30.4 7.1 76 39-118 25-119 (171)
324 PF04723 GRDA: Glycine reducta 44.9 2.1E+02 0.0045 26.3 9.1 80 50-133 5-91 (150)
325 PRK01217 hypothetical protein; 44.7 12 0.00025 33.5 1.3 25 90-114 63-87 (114)
326 PF13407 Peripla_BP_4: Peripla 44.7 97 0.0021 30.9 8.3 74 66-164 16-89 (257)
327 cd06289 PBP1_MalI_like Ligand- 44.7 92 0.002 31.1 8.2 89 39-127 106-198 (268)
328 COG0248 GppA Exopolyphosphatas 44.6 51 0.0011 37.2 6.6 82 36-119 59-141 (492)
329 PF04392 ABC_sub_bind: ABC tra 44.6 42 0.0009 35.0 5.7 58 66-123 16-75 (294)
330 TIGR00460 fmt methionyl-tRNA f 44.5 88 0.0019 33.1 8.2 85 30-121 3-92 (313)
331 PRK03732 hypothetical protein; 44.3 12 0.00027 33.3 1.3 25 90-114 63-87 (114)
332 cd06283 PBP1_RegR_EndR_KdgR_li 44.1 1.2E+02 0.0026 30.2 9.0 87 39-127 105-198 (267)
333 PF08659 KR: KR domain; Inter 43.7 1.8E+02 0.0039 27.8 9.6 82 32-116 5-90 (181)
334 PRK12856 hypothetical protein; 43.7 12 0.00026 32.7 1.2 25 90-114 56-80 (103)
335 cd06278 PBP1_LacI_like_2 Ligan 43.6 1.4E+02 0.0031 29.6 9.4 88 39-128 104-195 (266)
336 cd06390 PBP1_iGluR_AMPA_GluR1 43.6 81 0.0018 34.1 7.9 75 38-115 105-179 (364)
337 PRK06988 putative formyltransf 43.4 91 0.002 33.0 8.1 85 30-121 5-91 (312)
338 cd06290 PBP1_LacI_like_9 Ligan 43.3 1.1E+02 0.0025 30.4 8.6 89 39-127 104-196 (265)
339 PRK01045 ispH 4-hydroxy-3-meth 43.1 1.3E+02 0.0027 31.8 8.8 77 51-131 156-234 (298)
340 PF02310 B12-binding: B12 bind 43.1 92 0.002 27.2 7.0 72 52-130 2-75 (121)
341 PF14336 DUF4392: Domain of un 43.1 50 0.0011 34.6 5.9 21 95-115 119-139 (291)
342 PRK04155 chaperone protein Hch 43.0 1.6E+02 0.0034 30.9 9.5 18 105-122 145-163 (287)
343 cd06282 PBP1_GntR_like_2 Ligan 43.0 1.1E+02 0.0024 30.5 8.4 87 39-127 105-196 (266)
344 PF00885 DMRL_synthase: 6,7-di 42.9 62 0.0013 30.1 5.9 61 51-115 4-70 (144)
345 PRK10653 D-ribose transporter 42.8 2.2E+02 0.0047 29.2 10.9 47 66-115 44-90 (295)
346 TIGR03254 oxalate_oxc oxalyl-C 42.8 78 0.0017 36.3 8.1 75 37-116 195-274 (554)
347 PRK05858 hypothetical protein; 42.7 72 0.0016 36.5 7.7 76 36-116 191-271 (542)
348 cd06281 PBP1_LacI_like_5 Ligan 42.2 1.9E+02 0.0041 29.0 10.1 49 66-117 17-65 (269)
349 PRK00005 fmt methionyl-tRNA fo 42.1 91 0.002 32.9 7.8 84 30-120 3-91 (309)
350 PRK09259 putative oxalyl-CoA d 42.0 84 0.0018 36.2 8.2 76 36-116 201-281 (569)
351 cd03522 MoeA_like MoeA_like. T 42.0 1.5E+02 0.0033 31.4 9.4 86 33-120 134-232 (312)
352 PRK04346 tryptophan synthase s 41.9 1.7E+02 0.0038 32.1 10.1 23 97-119 213-239 (397)
353 TIGR02706 P_butyryltrans phosp 41.9 2.2E+02 0.0048 29.8 10.6 78 28-113 13-93 (294)
354 PRK13265 glycine/sarcosine/bet 41.8 74 0.0016 29.2 5.8 81 49-133 5-92 (154)
355 TIGR02026 BchE magnesium-proto 41.7 1.2E+02 0.0026 34.3 9.3 83 38-124 25-107 (497)
356 cd06274 PBP1_FruR Ligand bindi 41.7 1.6E+02 0.0034 29.4 9.4 89 39-127 105-198 (264)
357 cd01915 CODH Carbon monoxide d 41.2 35 0.00075 39.4 4.6 64 568-631 107-184 (613)
358 TIGR00639 PurN phosphoribosylg 41.2 2.2E+02 0.0048 27.7 9.8 82 33-121 8-93 (190)
359 PRK13011 formyltetrahydrofolat 41.0 1.4E+02 0.0031 31.2 8.9 81 31-121 93-179 (286)
360 cd06287 PBP1_LacI_like_8 Ligan 40.8 1.8E+02 0.004 29.4 9.8 88 39-127 107-198 (269)
361 COG0521 MoaB Molybdopterin bio 40.6 89 0.0019 29.9 6.6 59 67-128 29-94 (169)
362 cd06386 PBP1_NPR_C_like Ligand 40.5 1.8E+02 0.004 31.4 10.2 82 41-127 128-212 (387)
363 COG0021 TktA Transketolase [Ca 40.5 93 0.002 35.9 7.8 93 29-125 151-262 (663)
364 TIGR01093 aroD 3-dehydroquinat 40.5 2E+02 0.0043 28.8 9.6 55 76-130 116-172 (228)
365 COG2359 SpoVS Stage V sporulat 40.4 80 0.0017 25.7 5.2 42 90-131 9-51 (87)
366 cd06382 PBP1_iGluR_Kainate N-t 40.3 1.3E+02 0.0028 31.5 8.7 78 41-128 120-200 (327)
367 PRK10401 DNA-binding transcrip 40.0 1.4E+02 0.003 31.5 9.0 89 39-127 165-257 (346)
368 PRK06455 riboflavin synthase; 39.9 1.6E+02 0.0034 27.8 8.0 76 51-131 2-80 (155)
369 cd06319 PBP1_ABC_sugar_binding 39.9 2E+02 0.0043 28.8 9.9 77 49-126 124-204 (277)
370 cd06388 PBP1_iGluR_AMPA_GluR4 39.8 1.3E+02 0.0027 32.7 8.7 83 39-126 113-195 (371)
371 PRK07979 acetolactate synthase 39.8 67 0.0014 37.1 6.9 76 38-117 196-282 (574)
372 cd01536 PBP1_ABC_sugar_binding 39.7 2.3E+02 0.0051 27.8 10.3 49 66-117 17-65 (267)
373 PF13344 Hydrolase_6: Haloacid 39.7 1.1E+02 0.0024 26.4 6.7 78 36-124 18-96 (101)
374 PRK08155 acetolactate synthase 39.7 82 0.0018 36.2 7.6 44 38-83 201-244 (564)
375 PRK12419 riboflavin synthase s 39.5 95 0.0021 29.4 6.5 61 51-115 11-77 (158)
376 TIGR02478 6PF1K_euk 6-phosphof 39.4 62 0.0013 38.6 6.5 57 93-167 464-520 (745)
377 cd06359 PBP1_Nba_like Type I p 39.0 1.2E+02 0.0026 31.9 8.3 85 39-130 123-207 (333)
378 PLN02573 pyruvate decarboxylas 39.0 71 0.0015 36.9 6.9 44 37-82 213-256 (578)
379 PF02502 LacAB_rpiB: Ribose/Ga 38.8 1.3E+02 0.0028 27.9 7.2 64 52-117 1-67 (140)
380 TIGR03590 PseG pseudaminic aci 38.7 1.9E+02 0.004 29.9 9.4 76 32-116 11-89 (279)
381 PRK08199 thiamine pyrophosphat 38.4 92 0.002 35.8 7.8 45 36-82 192-236 (557)
382 cd06267 PBP1_LacI_sugar_bindin 38.1 2.4E+02 0.0052 27.6 10.0 49 66-117 17-65 (264)
383 TIGR03457 sulphoacet_xsc sulfo 38.0 1.2E+02 0.0025 35.1 8.5 45 37-83 185-229 (579)
384 TIGR01506 ribC_arch riboflavin 38.0 1.2E+02 0.0027 28.4 7.0 57 56-116 4-63 (151)
385 PRK13609 diacylglycerol glucos 38.0 1.4E+02 0.003 32.1 8.7 28 96-123 93-120 (380)
386 PRK10014 DNA-binding transcrip 37.7 1.9E+02 0.004 30.4 9.5 89 39-127 171-263 (342)
387 cd06320 PBP1_allose_binding Pe 37.4 2.7E+02 0.0059 27.8 10.4 86 40-127 110-202 (275)
388 PTZ00286 6-phospho-1-fructokin 37.4 75 0.0016 35.5 6.5 54 94-166 163-216 (459)
389 COG0703 AroK Shikimate kinase 37.4 26 0.00056 33.7 2.5 23 100-123 65-87 (172)
390 PRK05928 hemD uroporphyrinogen 37.3 92 0.002 31.0 6.8 76 35-115 108-185 (249)
391 PF00551 Formyl_trans_N: Formy 37.2 1.6E+02 0.0035 28.2 8.1 85 31-121 4-93 (181)
392 PRK06027 purU formyltetrahydro 37.1 1.4E+02 0.003 31.3 8.1 80 32-121 94-179 (286)
393 PF02401 LYTB: LytB protein; 37.1 3E+02 0.0066 28.7 10.5 78 51-132 155-234 (281)
394 TIGR03590 PseG pseudaminic aci 37.1 2.8E+02 0.0061 28.6 10.5 65 51-119 171-253 (279)
395 COG3473 Maleate cis-trans isom 37.1 1.6E+02 0.0036 29.2 7.8 100 23-127 72-197 (238)
396 cd01536 PBP1_ABC_sugar_binding 37.1 3E+02 0.0065 27.1 10.6 86 39-126 108-200 (267)
397 cd06353 PBP1_BmpA_Med_like Per 37.1 1.8E+02 0.0039 29.6 9.0 59 68-130 21-79 (258)
398 PRK06965 acetolactate synthase 37.0 1.1E+02 0.0023 35.5 8.0 44 37-82 210-253 (587)
399 PRK06830 diphosphate--fructose 37.0 91 0.002 34.7 7.0 54 94-166 159-212 (443)
400 cd06275 PBP1_PurR Ligand-bindi 36.8 1.5E+02 0.0033 29.5 8.4 89 39-127 106-198 (269)
401 COG1587 HemD Uroporphyrinogen- 36.8 1.5E+02 0.0031 30.1 8.1 75 36-115 107-183 (248)
402 cd07025 Peptidase_S66 LD-Carbo 36.7 99 0.0021 32.2 7.0 54 65-118 14-73 (282)
403 cd07062 Peptidase_S66_mccF_lik 36.6 1.2E+02 0.0025 32.1 7.6 67 52-118 2-77 (308)
404 cd06273 PBP1_GntR_like_1 This 36.6 3.1E+02 0.0068 27.2 10.7 51 66-119 17-67 (268)
405 cd00537 MTHFR Methylenetetrahy 36.6 1.6E+02 0.0035 30.3 8.6 95 23-119 2-98 (274)
406 cd06312 PBP1_ABC_sugar_binding 36.2 3.3E+02 0.0071 27.3 10.8 86 40-128 114-204 (271)
407 PF06506 PrpR_N: Propionate ca 36.2 57 0.0012 31.2 4.8 53 79-165 10-63 (176)
408 cd06309 PBP1_YtfQ_like Peripla 36.2 2E+02 0.0043 28.9 9.1 49 66-117 17-65 (273)
409 TIGR03884 sel_bind_Methan sele 36.0 87 0.0019 25.5 4.8 25 90-114 25-49 (74)
410 PRK08979 acetolactate synthase 36.0 83 0.0018 36.3 6.9 44 37-82 195-238 (572)
411 TIGR00640 acid_CoA_mut_C methy 36.0 2.6E+02 0.0057 25.5 8.8 26 93-118 67-93 (132)
412 PRK10423 transcriptional repre 36.0 4.3E+02 0.0094 27.3 12.0 49 66-117 74-122 (327)
413 PRK07710 acetolactate synthase 35.7 1.2E+02 0.0025 35.1 8.0 43 38-82 205-247 (571)
414 cd06300 PBP1_ABC_sugar_binding 35.6 3.2E+02 0.0069 27.3 10.6 86 39-127 112-204 (272)
415 cd06291 PBP1_Qymf_like Ligand 35.5 1.9E+02 0.0041 28.8 8.8 88 39-127 101-193 (265)
416 cd01545 PBP1_SalR Ligand-bindi 35.5 1.9E+02 0.0041 28.8 8.8 88 39-126 107-198 (270)
417 cd06295 PBP1_CelR Ligand bindi 35.4 1.8E+02 0.004 29.1 8.8 89 39-127 114-206 (275)
418 PRK07282 acetolactate synthase 35.4 99 0.0021 35.6 7.4 44 37-82 199-242 (566)
419 PF02016 Peptidase_S66: LD-car 35.3 55 0.0012 34.1 4.8 54 65-118 14-73 (284)
420 PRK14476 nitrogenase molybdenu 35.0 3E+02 0.0065 30.8 10.9 73 51-131 169-257 (455)
421 PRK06725 acetolactate synthase 35.0 86 0.0019 36.2 6.8 44 37-82 203-246 (570)
422 cd06293 PBP1_LacI_like_11 Liga 34.9 2.3E+02 0.005 28.3 9.4 88 39-126 105-196 (269)
423 CHL00099 ilvB acetohydroxyacid 34.9 88 0.0019 36.2 6.9 43 38-82 207-249 (585)
424 PF01012 ETF: Electron transfe 34.8 3.2E+02 0.007 25.4 9.7 65 67-131 47-114 (164)
425 TIGR00236 wecB UDP-N-acetylglu 34.8 2.6E+02 0.0057 29.7 10.2 70 41-116 19-95 (365)
426 PRK05647 purN phosphoribosylgl 34.7 2E+02 0.0044 28.2 8.5 83 33-122 9-95 (200)
427 PRK06048 acetolactate synthase 34.5 91 0.002 35.9 6.9 44 37-82 196-239 (561)
428 cd06310 PBP1_ABC_sugar_binding 34.5 3.4E+02 0.0073 27.1 10.6 51 66-117 17-67 (273)
429 TIGR00118 acolac_lg acetolacta 34.4 91 0.002 35.8 6.9 76 38-117 191-277 (558)
430 PF02302 PTS_IIB: PTS system, 34.4 58 0.0013 27.0 4.0 35 52-86 1-36 (90)
431 COG1440 CelA Phosphotransferas 34.2 1.4E+02 0.003 26.1 6.1 34 51-84 2-35 (102)
432 PRK10727 DNA-binding transcrip 34.2 1.6E+02 0.0036 30.9 8.4 87 40-126 166-256 (343)
433 cd06308 PBP1_sensor_kinase_lik 34.2 3.3E+02 0.0071 27.2 10.4 86 40-127 110-202 (270)
434 smart00046 DAGKc Diacylglycero 34.1 2.3E+02 0.005 25.3 8.1 20 107-126 49-69 (124)
435 TIGR03568 NeuC_NnaA UDP-N-acet 34.1 5.4E+02 0.012 27.7 12.4 84 41-126 19-113 (365)
436 KOG2836|consensus 34.0 2.1E+02 0.0045 26.3 7.4 77 36-120 28-114 (173)
437 TIGR01425 SRP54_euk signal rec 34.0 1.7E+02 0.0036 32.6 8.4 84 34-121 110-197 (429)
438 cd06294 PBP1_ycjW_transcriptio 33.8 2.7E+02 0.0058 27.7 9.6 49 66-117 22-70 (270)
439 PRK06112 acetolactate synthase 33.7 1.2E+02 0.0026 35.0 7.7 45 37-83 202-246 (578)
440 COG2062 SixA Phosphohistidine 33.7 1.2E+02 0.0026 28.9 6.3 91 33-126 29-120 (163)
441 PRK10423 transcriptional repre 33.6 2.3E+02 0.0049 29.4 9.3 90 38-127 162-255 (327)
442 cd06296 PBP1_CatR_like Ligand- 33.5 4.3E+02 0.0092 26.2 11.1 142 53-223 3-145 (270)
443 cd06277 PBP1_LacI_like_1 Ligan 33.5 2.9E+02 0.0063 27.5 9.8 48 66-116 20-67 (268)
444 PRK06466 acetolactate synthase 33.5 95 0.0021 35.8 6.8 44 37-82 195-238 (574)
445 PTZ00468 phosphofructokinase f 33.3 76 0.0016 39.8 6.0 55 92-165 181-235 (1328)
446 cd06286 PBP1_CcpB_like Ligand- 33.2 1.9E+02 0.0041 28.7 8.4 85 39-126 103-194 (260)
447 KOG4022|consensus 33.2 2.1E+02 0.0045 27.3 7.6 26 95-120 60-85 (236)
448 cd06272 PBP1_hexuronate_repres 33.1 1.7E+02 0.0037 29.1 8.0 88 39-126 100-191 (261)
449 cd06298 PBP1_CcpA_like Ligand- 33.0 2.9E+02 0.0064 27.3 9.8 50 66-118 17-66 (268)
450 PRK07525 sulfoacetaldehyde ace 33.0 1E+02 0.0023 35.6 7.1 45 37-83 189-233 (588)
451 cd06354 PBP1_BmpA_PnrA_like Pe 32.9 2.9E+02 0.0062 27.8 9.7 48 66-117 20-67 (265)
452 PRK00726 murG undecaprenyldiph 32.7 1.9E+02 0.0042 30.6 8.7 73 40-120 20-104 (357)
453 COG0303 MoeA Molybdopterin bio 32.7 79 0.0017 34.8 5.6 58 69-130 207-264 (404)
454 TIGR01504 glyox_carbo_lig glyo 32.7 99 0.0022 35.8 6.8 44 37-82 191-234 (588)
455 PLN02564 6-phosphofructokinase 32.3 1.2E+02 0.0025 34.3 6.9 51 95-165 164-215 (484)
456 PRK07092 benzoylformate decarb 32.3 1.3E+02 0.0029 34.2 7.7 76 37-116 195-281 (530)
457 cd06354 PBP1_BmpA_PnrA_like Pe 32.3 3E+02 0.0066 27.7 9.7 86 41-126 111-202 (265)
458 cd01574 PBP1_LacI Ligand-bindi 32.2 3.5E+02 0.0075 26.8 10.2 87 39-127 105-194 (264)
459 cd02068 radical_SAM_B12_BD B12 32.2 2.6E+02 0.0057 24.8 8.2 79 39-126 6-85 (127)
460 cd06292 PBP1_LacI_like_10 Liga 32.1 3.4E+02 0.0073 27.1 10.1 49 66-117 17-65 (273)
461 PF00994 MoCF_biosynth: Probab 32.0 1.1E+02 0.0023 28.1 5.7 61 68-131 20-82 (144)
462 PRK08125 bifunctional UDP-gluc 31.9 1.7E+02 0.0038 34.3 8.8 85 30-121 3-89 (660)
463 cd06274 PBP1_FruR Ligand bindi 31.8 3.2E+02 0.0069 27.1 9.8 49 66-117 17-65 (264)
464 PRK14719 bifunctional RNAse/5- 31.8 1.1E+02 0.0023 33.2 6.4 46 36-81 53-98 (360)
465 COG2099 CobK Precorrin-6x redu 31.7 1.7E+02 0.0037 30.0 7.3 99 24-125 42-146 (257)
466 PRK11780 isoprenoid biosynthes 31.7 2E+02 0.0044 28.7 8.0 34 51-85 2-40 (217)
467 cd00758 MoCF_BD MoCF_BD: molyb 31.3 1.3E+02 0.0028 27.3 6.1 57 68-127 22-80 (133)
468 TIGR00676 fadh2 5,10-methylene 31.3 2.8E+02 0.006 28.7 9.2 94 23-120 2-99 (272)
469 TIGR00249 sixA phosphohistidin 31.2 1.8E+02 0.004 27.0 7.2 95 34-131 27-121 (152)
470 COG1731 Archaeal riboflavin sy 30.9 1.2E+02 0.0025 27.7 5.3 65 56-124 6-75 (154)
471 cd06373 PBP1_NPR_like Ligand b 30.9 2.6E+02 0.0055 30.2 9.4 84 41-128 133-220 (396)
472 COG5441 Uncharacterized conser 30.8 2.6E+02 0.0056 29.3 8.4 40 106-167 90-129 (401)
473 PRK10703 DNA-binding transcrip 30.8 2.1E+02 0.0045 30.0 8.5 88 39-126 167-258 (341)
474 PF00106 adh_short: short chai 30.8 4.1E+02 0.0089 24.2 9.7 77 39-119 14-92 (167)
475 TIGR01120 rpiB ribose 5-phosph 30.8 2.3E+02 0.005 26.4 7.5 62 53-116 2-65 (143)
476 cd06305 PBP1_methylthioribose_ 30.7 3.9E+02 0.0084 26.6 10.2 49 66-117 17-65 (273)
477 PRK09492 treR trehalose repres 30.7 3.2E+02 0.007 28.1 9.8 84 39-125 164-250 (315)
478 TIGR01481 ccpA catabolite cont 30.5 5.7E+02 0.012 26.4 11.8 48 66-116 77-124 (329)
479 PRK09107 acetolactate synthase 30.5 1.2E+02 0.0026 35.3 7.0 76 37-116 201-289 (595)
480 TIGR02405 trehalos_R_Ecol treh 30.4 3.4E+02 0.0073 28.1 9.9 85 39-126 161-248 (311)
481 PRK10014 DNA-binding transcrip 30.3 5.5E+02 0.012 26.7 11.7 49 66-117 82-130 (342)
482 PRK06882 acetolactate synthase 30.3 1.3E+02 0.0029 34.5 7.4 43 38-82 196-238 (574)
483 PF04321 RmlD_sub_bind: RmlD s 30.3 85 0.0018 32.6 5.3 67 52-124 2-68 (286)
484 PRK05569 flavodoxin; Provision 30.3 3.4E+02 0.0074 24.4 8.8 56 50-105 83-138 (141)
485 TIGR00215 lpxB lipid-A-disacch 30.2 2.2E+02 0.0047 31.0 8.6 26 95-121 77-102 (385)
486 PRK07789 acetolactate synthase 30.2 1.2E+02 0.0026 35.3 7.0 44 37-82 220-263 (612)
487 cd06304 PBP1_BmpA_like Peripla 30.0 3.3E+02 0.0072 27.2 9.6 82 52-161 1-86 (260)
488 cd06322 PBP1_ABC_sugar_binding 29.9 4.6E+02 0.0099 26.0 10.6 85 40-127 109-199 (267)
489 PRK10867 signal recognition pa 29.9 2.3E+02 0.0051 31.5 8.8 86 34-123 110-200 (433)
490 PRK08322 acetolactate synthase 29.9 1.3E+02 0.0027 34.5 7.0 75 37-115 185-270 (547)
491 TIGR01884 cas_HTH CRISPR locus 29.8 3.1E+02 0.0067 26.8 8.9 80 51-131 27-112 (203)
492 PRK06276 acetolactate synthase 29.7 1.9E+02 0.004 33.5 8.4 77 38-117 193-279 (586)
493 cd06313 PBP1_ABC_sugar_binding 29.7 4.8E+02 0.01 26.2 10.7 87 39-127 110-203 (272)
494 cd01543 PBP1_XylR Ligand-bindi 29.6 2.8E+02 0.0061 27.7 8.9 89 39-127 98-191 (265)
495 COG2454 Uncharacterized conser 29.5 2.2E+02 0.0048 28.0 7.3 78 38-128 116-194 (211)
496 cd06275 PBP1_PurR Ligand-bindi 29.4 4.1E+02 0.0088 26.3 10.1 49 66-117 17-65 (269)
497 cd06301 PBP1_rhizopine_binding 29.2 4.1E+02 0.0088 26.4 10.1 84 52-161 1-87 (272)
498 PRK02412 aroD 3-dehydroquinate 29.2 4.3E+02 0.0093 26.9 10.1 55 76-130 133-189 (253)
499 PRK11303 DNA-binding transcrip 29.2 5.9E+02 0.013 26.3 11.6 48 66-116 79-126 (328)
500 KOG4180|consensus 29.1 50 0.0011 34.7 3.1 69 38-119 49-117 (395)
No 1
>KOG3857|consensus
Probab=100.00 E-value=3e-77 Score=593.81 Aligned_cols=429 Identities=53% Similarity=0.831 Sum_probs=398.6
Q ss_pred CCCCCceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHH
Q psy2427 16 PTPDKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDS 95 (660)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~ 95 (660)
+++|+++.|+|.++.++||.|++.+++..++++|+|++++|||+++.+.+.++.++++|+++||.+.+|+++.++|+..+
T Consensus 36 q~k~~~~af~m~~s~~rfG~gv~~Evg~dikn~gaKk~llvTDkni~~~~~~~~a~~~L~~~~I~~~vyD~v~~ePtv~s 115 (465)
T KOG3857|consen 36 QIKMMSVAFFMIPSTSRFGKGVLAEVGDDIKNLGAKKTLLVTDKNIAKLGLVKVAQDSLEENGINVEVYDKVQPEPTVGS 115 (465)
T ss_pred ccccceeeEEeccchhhhcchhHHHHHHHHHhcCccceEEeeCCChhhcccHHHHHHHHHHcCCceEEecCccCCCchhh
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCce
Q psy2427 96 FLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVS 175 (660)
Q Consensus 96 v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~a 175 (660)
+.++++.+++.++|.+|+|||||++|+||+++++..++++++.||++.|+|++++...+.+|+|+||||+|||||.|+++
T Consensus 116 ~~~alefak~~~fDs~vaiGGGSa~DtaKaaaL~Asn~~~eflDyvg~pigk~~~~s~p~lPLiAipTTaGTgSEtT~~A 195 (465)
T KOG3857|consen 116 VTAALEFAKKKNFDSFVAIGGGSAHDTAKAAALLASNGEGEFLDYVGPPIGKVKQSSKPLLPLIAIPTTAGTGSETTRFA 195 (465)
T ss_pred HHHHHHHHHhcccceEEEEcCcchhhhHHHHHHhhcCCCccchhccCCcccccccccccccceEecccCCCccccceeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHH
Q psy2427 176 IFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPV 255 (660)
Q Consensus 176 vi~~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (660)
+++.++.+.|.++.+..+.|.++++||.-+.++|+++++.+|+|+|+|++|+|.+.+|.+|+++
T Consensus 196 I~d~e~~k~K~gI~~k~ikP~lav~DPl~~~~~P~~v~a~tGfDvlcHalEsyts~py~~rsp~---------------- 259 (465)
T KOG3857|consen 196 IIDYEELKIKMGIIDKNIKPTLAVNDPLTMLGLPPRVTAATGFDVLCHALESYTSTPYDQRSPR---------------- 259 (465)
T ss_pred EecchhhheeeeeecccccceeeecChHHhccCChHHhhhcchHHHHHHHHHHhcCcccccCCC----------------
Confidence 9999988999999999999999999999999999999999999999999999998654444333
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCch
Q psy2427 256 SDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 335 (660)
Q Consensus 256 s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG 335 (660)
T Consensus 260 -------------------------------------------------------------------------------- 259 (465)
T KOG3857|consen 260 -------------------------------------------------------------------------------- 259 (465)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHhhHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccc
Q psy2427 336 LSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGL 415 (660)
Q Consensus 336 ~avai~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i 415 (660)
T Consensus 260 -------------------------------------------------------------------------------- 259 (465)
T KOG3857|consen 260 -------------------------------------------------------------------------------- 259 (465)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCC
Q psy2427 416 IDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495 (660)
Q Consensus 416 ~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~ 495 (660)
+.+|..||.|+..||++|.||..|+++|.+++.+++.||+
T Consensus 260 ----------------------------------------psnp~~rp~yqgsNPIsD~wA~~al~li~kyl~rAv~~p~ 299 (465)
T KOG3857|consen 260 ----------------------------------------PSNPGVRPLYQGSNPISDAWALKALELINKYLVRAVKDPK 299 (465)
T ss_pred ----------------------------------------CCCCccccccccCCchHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 3445556677788899999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHH
Q psy2427 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIE 575 (660)
Q Consensus 496 ~~~ar~~~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ 575 (660)
|+|||.+|.+|+++||++|+|+|++++|+|+|+||+..+..-+..|+.+|.=||||+++++++|++.+|+...+|+|.-+
T Consensus 300 d~eARt~M~~As~~aG~gFgNAgvhlcHglsypisg~vk~~kakdy~~dh~liPHGlsv~v~~pavfeft~~~cP~rhl~ 379 (465)
T KOG3857|consen 300 DEEARTDMHYASYLAGMGFGNAGVHLCHGLSYPISGQVKSYKAKDYYHDHNLIPHGLSVAVLLPAVFEFTAAACPDRHLE 379 (465)
T ss_pred cHHHHHHHHHHHHhhccccCcccccceeeccccccCccccccccccccccccCCcchhhhhhhhhhhhhccccCchhHHH
Confidence 99999999999999999999999999999999999965544555566666669999999999999999999999999999
Q ss_pred HHHHhCCCCC-CCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHH
Q psy2427 576 AAELLGADVS-RVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFE 654 (660)
Q Consensus 576 ia~~lg~~~~-~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~ 654 (660)
.++.||.+.. ....+++.+.++|+|+.|++++|+|..|+++|++.+||+.+++.++.+.+.+.+.|++.|+|++.+|++
T Consensus 380 aaq~LGa~~~h~~~~e~~~~~l~d~lr~~~~~~~i~~gL~~lG~~~sDi~~Lve~a~~~~~~~~~aP~~~t~E~v~alfe 459 (465)
T KOG3857|consen 380 AAQRLGAIARHFGASEDAGEELADRLRGLMRDMGIPNGLKELGVKTSDIEALVEHAMHDACHTTNAPRQQTKEQVSALFE 459 (465)
T ss_pred HHHHhhhHhhcccchhccHHHHHHHHHHHHHhcCCCcchHhhCccccchHHHHhcccccccccccCCccccHHHHHHHHH
Confidence 9999997665 456678889999999999999999999999999999999999999988888877899999999999999
Q ss_pred HHhhcC
Q psy2427 655 NSMSVY 660 (660)
Q Consensus 655 ~a~~~~ 660 (660)
.+|+.|
T Consensus 460 ksme~y 465 (465)
T KOG3857|consen 460 KSMEVY 465 (465)
T ss_pred HhhccC
Confidence 999988
No 2
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=100.00 E-value=5.4e-77 Score=626.74 Aligned_cols=373 Identities=38% Similarity=0.600 Sum_probs=343.2
Q ss_pred eccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh
Q psy2427 26 MASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS 105 (660)
Q Consensus 26 ~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~ 105 (660)
..|++|+||.|++.++.++++.+|.+|+|||||+++.+.++++++.+.|+..++++.+|+++++||+.++|+++++.+++
T Consensus 5 ~~p~~i~fG~g~l~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~ 84 (377)
T COG1454 5 YLPTEILFGRGSLKELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVARE 84 (377)
T ss_pred ccCceEEecCChHHHHHHHHHhcCCCceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHh
Confidence 33589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCce
Q psy2427 106 VQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAK 185 (660)
Q Consensus 106 ~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K 185 (660)
+++|+|||+||||+||+||++++.+.++ .+.+||... ++ ...+..|+|+||||+|||||+|+++|++++..+.|
T Consensus 85 ~~~D~iIalGGGS~~D~AK~i~~~~~~~-~~~~~~~~i----~~-~~~~~~plIaIPTTaGTGSEvT~~aVitd~~~~~K 158 (377)
T COG1454 85 FGPDTIIALGGGSVIDAAKAIALLAENP-GSVLDYEGI----GK-VKKPKAPLIAIPTTAGTGSEVTPFAVITDEETGVK 158 (377)
T ss_pred cCCCEEEEeCCccHHHHHHHHHHHhhCC-chhhhhccc----cc-ccCCCCCEEEecCCCcchhhhcCeEEEEeCCCcce
Confidence 9999999999999999999999999987 678888752 11 13344899999999999999999999999988899
Q ss_pred eeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy2427 186 TGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQ 265 (660)
Q Consensus 186 ~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~ 265 (660)
+.+.++.++|+++|+||+|+.++|+.+++.+|+|||.||+|+|+|.
T Consensus 159 ~~i~~~~l~Pd~aI~Dp~lt~~~P~~ltA~TGmDALtHAiEAy~s~---------------------------------- 204 (377)
T COG1454 159 YAIADPELLPDVAILDPELTLGMPPSLTAATGMDALTHAIEAYVSP---------------------------------- 204 (377)
T ss_pred eeccCcccCCCEEEEChHHhcCCChHhhhhhhHHHHHHHHHHHHcC----------------------------------
Confidence 9999999999999999999999999999999999999999998871
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHH
Q psy2427 266 TIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAV 345 (660)
Q Consensus 266 ~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~ 345 (660)
T Consensus 205 -------------------------------------------------------------------------------- 204 (377)
T COG1454 205 -------------------------------------------------------------------------------- 204 (377)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCC
Q psy2427 346 FNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLP 425 (660)
Q Consensus 346 l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P 425 (660)
T Consensus 205 -------------------------------------------------------------------------------- 204 (377)
T COG1454 205 -------------------------------------------------------------------------------- 204 (377)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy2427 426 ERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHL 505 (660)
Q Consensus 426 ~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~ 505 (660)
.+||++|.+|.+++++|.++|+++++|++|.+||++|++
T Consensus 205 -----------------------------------------~a~p~tD~~A~~ai~li~~~L~~a~~~g~d~eARe~m~~ 243 (377)
T COG1454 205 -----------------------------------------AANPITDALALEAIKLIFEYLPRAVADGDDLEAREKMHL 243 (377)
T ss_pred -----------------------------------------CCCcchHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345677777777777777888888888899999999999
Q ss_pred HHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCC
Q psy2427 506 ASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVS 585 (660)
Q Consensus 506 as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~ 585 (660)
||++||++|+|+|+|++|+|+|+||+.| |+|||+++|+++|+|++||.+.+++||++|++.||...+
T Consensus 244 aa~lAGmAF~na~lG~~HalaH~lG~~~-------------~~pHG~~nAillP~V~~fN~~~a~~r~a~iA~~lg~~~~ 310 (377)
T COG1454 244 AATLAGMAFANAGLGLVHALAHPLGALF-------------HIPHGLANAILLPYVIRFNAEAAPERYARIARALGLPGE 310 (377)
T ss_pred HHHHHHHHhcchhHHHHHHhhccccccc-------------cCchHHHhhHhhHHHHHHhhhhhHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999975 799999999999999999999999999999999998776
Q ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHHHHh
Q psy2427 586 RVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSM 657 (660)
Q Consensus 586 ~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~a~ 657 (660)
+. ....+++.+++|.+++|+|++|+|+|+++++++++++.|+. +.+..+|||++|.||+++||+++|
T Consensus 311 ~~----~~~~~i~~i~~L~~~lgip~~L~d~Gv~~~~i~~~a~~A~~-d~~~~~NPr~~t~ed~~~i~~~a~ 377 (377)
T COG1454 311 GD----AADALIDALRELLERLGIPKRLRDLGVKEEDIDKLAEDALA-DPCTATNPRPPTREDIKEIYEAAY 377 (377)
T ss_pred cc----hHHHHHHHHHHHHHHcCCCCcHHHcCCCHHHHHHHHHHHHh-CcccCCCCCCCCHHHHHHHHHHhC
Confidence 53 66778999999999999999999999999999999999996 677889999999999999999986
No 3
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=100.00 E-value=4.4e-72 Score=604.81 Aligned_cols=383 Identities=25% Similarity=0.402 Sum_probs=344.8
Q ss_pred CCceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHH
Q psy2427 19 DKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLE 98 (660)
Q Consensus 19 ~~~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~ 98 (660)
|..+.|.+ |++|+||.|++++|+++++++|.+|++||||+++.+.+.++++.+.|++.|+.+.+|+++++||+.+.|++
T Consensus 1 ~~~~~~~~-p~~i~~G~g~~~~l~~~~~~~g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~ 79 (383)
T PRK09860 1 MAASTFFI-PSVNVIGADSLTDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAA 79 (383)
T ss_pred CCcccccc-CCeEEECcCHHHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHH
Confidence 34566665 58999999999999999999999999999999888888889999999999999999999999999999999
Q ss_pred HHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEe
Q psy2427 99 ATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFD 178 (660)
Q Consensus 99 ~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~ 178 (660)
+++.++++++|+||||||||+||+||+++..+.++ .++|||... + +...+.+|+|+||||+|||||+|+++|++
T Consensus 80 ~~~~~~~~~~D~IiaiGGGS~iD~AK~ia~~~~~~-~~~~~~~~~----~-~~~~~~~p~iaIPTTagTGSE~t~~avi~ 153 (383)
T PRK09860 80 GLKLLKENNCDSVISLGGGSPHDCAKGIALVAANG-GDIRDYEGV----D-RSAKPQLPMIAINTTAGTASEMTRFCIIT 153 (383)
T ss_pred HHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHCC-CCHHHHhCc----C-ccCCCCCCEEEEeCCCcchhccCceEEEE
Confidence 99999999999999999999999999999988775 678888632 1 22345589999999999999999999999
Q ss_pred eCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q psy2427 179 YEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDV 258 (660)
Q Consensus 179 ~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 258 (660)
+++.+.|.++.++.++|+++|+||+++.++|++++++|++|||+|++|+|++. .
T Consensus 154 ~~~~~~K~~~~~~~~~P~~ai~Dp~l~~s~P~~~ta~tg~DAL~HaiE~y~s~-------------------~------- 207 (383)
T PRK09860 154 DEARHIKMAIVDKHVTPLLSVNDSSLMIGMPKSLTAATGMDALTHAIEAYVSI-------------------A------- 207 (383)
T ss_pred ecCCCceEEEECcCcccCEEEECcHhhcCCCHHHHHHHHHHHHHHHHHHHHcC-------------------C-------
Confidence 98888999999999999999999999999999999999999999999999872 2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHH
Q psy2427 259 WARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSV 338 (660)
Q Consensus 259 la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~av 338 (660)
T Consensus 208 -------------------------------------------------------------------------------- 207 (383)
T PRK09860 208 -------------------------------------------------------------------------------- 207 (383)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccccc
Q psy2427 339 VMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDP 418 (660)
Q Consensus 339 ai~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~ 418 (660)
T Consensus 208 -------------------------------------------------------------------------------- 207 (383)
T PRK09860 208 -------------------------------------------------------------------------------- 207 (383)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q psy2427 419 LHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLE 498 (660)
Q Consensus 419 ~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ 498 (660)
.||++|.+|+++++++.++++++++|++|++
T Consensus 208 -------------------------------------------------~~p~sd~~a~~ai~~i~~~l~~a~~~~~d~~ 238 (383)
T PRK09860 208 -------------------------------------------------ATPITDACALKAVTMIAENLPLAVEDGSNAK 238 (383)
T ss_pred -------------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 2455666666666777777777777888999
Q ss_pred HHHHHHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHH
Q psy2427 499 ARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAE 578 (660)
Q Consensus 499 ar~~~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~ 578 (660)
+|++|+|||++||++|+++|+|++|+|+|+||+.| ++|||+++++++|+||+||.+..++||.++++
T Consensus 239 aR~~m~~as~laG~a~~~~g~g~~Hal~h~lg~~~-------------~ipHG~~~ai~lP~vl~~n~~~~~~k~~~~a~ 305 (383)
T PRK09860 239 AREAMAYAQFLAGMAFNNASLGYVHAMAHQLGGFY-------------NLPHGVCNAVLLPHVQVFNSKVAAARLRDCAA 305 (383)
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHhhHHhhCc-------------CCCcHHHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence 99999999999999999999999999999999974 79999999999999999999999999999999
Q ss_pred HhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHHHHh
Q psy2427 579 LLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSM 657 (660)
Q Consensus 579 ~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~a~ 657 (660)
.||....+.++++.+.++++++++|++++|+|++|+|+|+++++++.+++.++.+ ....+||+++|++|+++||+++|
T Consensus 306 ~~g~~~~~~~~~~~a~~~i~~i~~l~~~lglP~~L~e~gv~~~~~~~ia~~a~~~-~~~~~np~~~t~~~i~~il~~~~ 383 (383)
T PRK09860 306 AMGVNVTGKNDAEGAEACINAIRELAKKVDIPAGLRDLNVKEEDFAVLATNALKD-ACGFTNPIQATHEEIVAIYRAAM 383 (383)
T ss_pred HhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhC-cccCCCCCCCCHHHHHHHHHHhC
Confidence 9998766667777888899999999999999999999999999999999999854 34457999999999999999875
No 4
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=100.00 E-value=2.1e-71 Score=605.37 Aligned_cols=412 Identities=66% Similarity=1.094 Sum_probs=362.9
Q ss_pred ceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCC
Q psy2427 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQC 108 (660)
Q Consensus 29 ~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~ 108 (660)
++|+||.|++++++++++++|.+|++||||+++++.+.++++.+.|++.|+++.+|+++++||+.+.|+++++.++++++
T Consensus 2 ~~i~fG~g~~~~l~~~l~~~g~~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~ 81 (414)
T cd08190 2 SNIRFGPGVTAEVGMDLKNLGARRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQF 81 (414)
T ss_pred CeEEECcCHHHHHHHHHHHcCCCeEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCC
Confidence 58999999999999999999999999999999988888899999999999999999999999999999999999999999
Q ss_pred CEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceeee
Q psy2427 109 DAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGI 188 (660)
Q Consensus 109 D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~~ 188 (660)
|+||||||||+||+||+++..+.+++.+++||+....+.+.+...+.+|+|+||||+|||||+|+++|+++++.+.|.++
T Consensus 82 D~IIaiGGGSviD~AKaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagTGSE~t~~avi~~~~~~~K~~i 161 (414)
T cd08190 82 DAFVAVGGGSVIDTAKAANLYASHPDADFLDYVNAPIGKGKPPPGPLKPLIAIPTTAGTGSETTGVAIFDLPELKAKTGI 161 (414)
T ss_pred CEEEEeCCccHHHHHHHHHHHHhCCCCCHHHHHhhccccccccCCCCCCEEEeCCCCchhhhhccceeeeccCCCeeEEe
Confidence 99999999999999999999888776788998754333343445566899999999999999999999998888899999
Q ss_pred ecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q psy2427 189 ANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIR 268 (660)
Q Consensus 189 ~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~i~ 268 (660)
.++.++|+++|+||+++.++|++++++|++|+|+|++|+|++..+..+.+..+
T Consensus 162 ~~~~~~P~~ailDp~l~~tlP~~~ta~tg~DAl~haiEay~s~~~~~~~~~~~--------------------------- 214 (414)
T cd08190 162 ASRALKPTLGIVDPLNTLTMPSRVTASSGLDVLCHALESYTAIPYNQRPPRPS--------------------------- 214 (414)
T ss_pred eCCCccCCEEEEChHhhcCCCHHHHHHHHHHHHHHHHHHHhcccccccccccc---------------------------
Confidence 99999999999999999999999999999999999999999831111100000
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHHh
Q psy2427 269 QYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNF 348 (660)
Q Consensus 269 ~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~~ 348 (660)
T Consensus 215 -------------------------------------------------------------------------------- 214 (414)
T cd08190 215 -------------------------------------------------------------------------------- 214 (414)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchh
Q psy2427 349 TAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERV 428 (660)
Q Consensus 349 ~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~ 428 (660)
T Consensus 215 -------------------------------------------------------------------------------- 214 (414)
T cd08190 215 -------------------------------------------------------------------------------- 214 (414)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy2427 429 TAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASA 508 (660)
Q Consensus 429 ~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as~ 508 (660)
.++.++.|...||++|.+|+++++++.++++++++|+.|+++|++|+|||+
T Consensus 215 -----------------------------~~~~~~~~~~~~p~sd~~a~~ai~li~~~l~~a~~~~~d~~AR~~~~~As~ 265 (414)
T cd08190 215 -----------------------------NPIQRPAYQGSNPISDIWSLQALRIVGKYLRRAVADPDDLEARSQMHLAST 265 (414)
T ss_pred -----------------------------cccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 000112233678999999999999999999999999999999999999999
Q ss_pred HHhHhhhcccchhhhhhhccccCCcc-ccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCC
Q psy2427 509 MAGVGFGNAGVHLCHGLSYPISGNVK-TFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRV 587 (660)
Q Consensus 509 ~ag~~~~~~g~~~~H~l~~~l~~~~~-~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~ 587 (660)
+||++|+++|++++|+|+|+||+.+. -+|| .|+-.+++++||+++++++|+||+||.+..++||++++++||.+..+.
T Consensus 266 laG~a~~~~g~~~~Hai~~~l~~~~~~~~~~-~~~~~~~~ipHG~~~ai~lp~vl~~n~~~~~~k~~~~a~~lg~~~~~~ 344 (414)
T cd08190 266 FAGIGFGNAGVHLCHGMSYPIAGLVKDYKAP-DYPVDHPLVPHGLSVVVTAPAVFRFTAPACPERHLEAAEILGADTSNA 344 (414)
T ss_pred HHHHHHhCcchhhhhHhccHhhcCcCccccc-cccccCCCCChHHHHHHHHHHHHHhhhhhCHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999863 2233 443334469999999999999999999999999999999999876666
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHHHHh
Q psy2427 588 KKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSM 657 (660)
Q Consensus 588 ~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~a~ 657 (660)
++++.+..+++++++|++++|+|++|+|+|+++++++.+++.++.+.+...+||+++|+|++++||+++|
T Consensus 345 ~~~~~~~~~i~~i~~l~~~lglP~~L~e~Gv~~~~~~~ia~~a~~~~~~~~~np~~~t~~~i~~il~~~~ 414 (414)
T cd08190 345 KIEDAGEVLADALRKLMRDLGVPDGLAALGYTESDIPALVKGTLPQQRVLKLAPRPVDEEDLAALFEESM 414 (414)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhccccccCCCCCCCHHHHHHHHHHhC
Confidence 6778888899999999999999999999999999999999999866666678999999999999999986
No 5
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=100.00 E-value=2.8e-70 Score=592.05 Aligned_cols=374 Identities=31% Similarity=0.454 Sum_probs=332.4
Q ss_pred ceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHH
Q psy2427 21 EYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEAT 100 (660)
Q Consensus 21 ~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~ 100 (660)
.+.|.+ |++|+||.|++++|+++++++|.+|++||+|+++.+.+.++++.+.|++.|+++.+|+++++||+.+.|++++
T Consensus 21 ~~~f~~-P~~i~fG~g~~~~l~~~~~~~g~~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~ 99 (395)
T PRK15454 21 VKTFSV-PPVTLCGPGAVSSCGQQAQTRGLKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAV 99 (395)
T ss_pred hceeec-CCeEEECcCHHHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHH
Confidence 456766 5899999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred HHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeC
Q psy2427 101 KFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYE 180 (660)
Q Consensus 101 ~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~ 180 (660)
+.++++++|+||||||||+||+||+++..+.+++..++++.. .+...+.+|+|+||||+|||||+|+++|++++
T Consensus 100 ~~~r~~~~D~IiavGGGS~iD~AKaia~~~~~~~~~~~~~~~------~~~~~~~~P~iaIPTtaGTGSE~t~~avi~~~ 173 (395)
T PRK15454 100 AQLRESGCDGVIAFGGGSVLDAAKAVALLVTNPDSTLAEMSE------TSVLQPRLPLIAIPTTAGTGSETTNVTVIIDA 173 (395)
T ss_pred HHHHhcCcCEEEEeCChHHHHHHHHHHHHHhCCCccHHHHhc------ccccCCCCCEEEECCCCcchhhhCCeEEEEcC
Confidence 999999999999999999999999999998887555655531 22334568999999999999999999999998
Q ss_pred CCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q psy2427 181 PLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260 (660)
Q Consensus 181 ~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la 260 (660)
+.+.|.++.++.++|+++|+||+++.++|+++++++++|||+|++|+|++. ..
T Consensus 174 ~~~~K~~~~~~~~~P~~ailDP~l~~~~P~~~ta~tg~DAl~HaiE~y~s~-------------------~~-------- 226 (395)
T PRK15454 174 VSGRKQVLAHASLMPDVAILDAALTEGVPSHVTAMTGIDALTHAIEAYSAL-------------------NA-------- 226 (395)
T ss_pred CCCeeEEeeCCcccCCEEEEChhhhccCCHHHHHHHHHHHHHHHHHHHHcc-------------------CC--------
Confidence 889999999999999999999999999999999999999999999999872 23
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHh
Q psy2427 261 RFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVM 340 (660)
Q Consensus 261 ~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai 340 (660)
T Consensus 227 -------------------------------------------------------------------------------- 226 (395)
T PRK15454 227 -------------------------------------------------------------------------------- 226 (395)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccccccc
Q psy2427 341 SAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLH 420 (660)
Q Consensus 341 ~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~ 420 (660)
T Consensus 227 -------------------------------------------------------------------------------- 226 (395)
T PRK15454 227 -------------------------------------------------------------------------------- 226 (395)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q psy2427 421 TLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEAR 500 (660)
Q Consensus 421 ~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar 500 (660)
||++|.+|+++++++.++++++++|++|+++|
T Consensus 227 ------------------------------------------------np~td~~a~~ai~li~~~l~~a~~~~~d~~AR 258 (395)
T PRK15454 227 ------------------------------------------------TPFTDSLAIGAIAMIGKSLPKAVGYGHDLAAR 258 (395)
T ss_pred ------------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 34555556666666666666667778899999
Q ss_pred HHHHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHh
Q psy2427 501 SHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELL 580 (660)
Q Consensus 501 ~~~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~l 580 (660)
++|+|||++||++|+++|++++|+|+|+||+.| ++|||+++++++|+||+||.+.+++||+++++.+
T Consensus 259 ~~m~~As~laG~a~~~~g~g~~Hal~h~lg~~~-------------~ipHG~~~aillP~v~~~n~~~~~~k~~~la~~l 325 (395)
T PRK15454 259 ESMLLASCMAGMAFSSAGLGLCHAMAHQPGAAL-------------HIPHGLANAMLLPTVMEFNRMVCRERFSQIGRAL 325 (395)
T ss_pred HHHHHHHHHHHHHHhcccchHHHhhhhhhccCC-------------CCCcHHHHHHHHHHHHHHhcccCHHHHHHHHHHh
Confidence 999999999999999999999999999999974 7999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHHHH
Q psy2427 581 GADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENS 656 (660)
Q Consensus 581 g~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~a 656 (660)
|...+ ....+++++++|++++|+|++|+|+|+++++++++++.++.+ ....+||+++|+|++++||+++
T Consensus 326 ~~~~~------~~~~~i~~i~~l~~~lglP~~L~e~gv~~~~~~~ia~~a~~~-~~~~~nP~~~t~e~i~~il~~~ 394 (395)
T PRK15454 326 RTKKS------DDRDAINAVSELIAEVGIGKRLGDVGATSAHYGAWAQAALED-ICLRSNPRTASLEQIVGLYAAA 394 (395)
T ss_pred CCCcc------cHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhc-ccccCCCCCCCHHHHHHHHHhc
Confidence 85411 123568999999999999999999999999999999999854 4456799999999999999875
No 6
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=100.00 E-value=2.6e-69 Score=583.79 Aligned_cols=377 Identities=30% Similarity=0.463 Sum_probs=337.8
Q ss_pred eeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHH
Q psy2427 22 YAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATK 101 (660)
Q Consensus 22 ~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~ 101 (660)
+.|.+ |++|+||.|++++++++++++|.+|++||||+++++.++.+++.+.|++.|+++.+|+++++||+.+.|+++++
T Consensus 2 ~~~~~-p~~i~fG~g~l~~l~~~l~~~g~~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~ 80 (379)
T TIGR02638 2 NRLIL-NETSYFGAGAIEDIVDEVKRRGFKKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVA 80 (379)
T ss_pred CcccC-CCeEEECcCHHHHHHHHHHhcCCCEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHH
Confidence 34555 58999999999999999999999999999999998887889999999999999999999999999999999999
Q ss_pred HhHhcCCCEEEEecCchhhhHHHHHHhHhcCCC-cchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeC
Q psy2427 102 FVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPE-AEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYE 180 (660)
Q Consensus 102 ~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~-~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~ 180 (660)
.++++++|+||||||||++|+||+++..+.+++ .+++||... .+...+.+|+|+||||+|||||+|+++|++++
T Consensus 81 ~~~~~~~D~IiaiGGGSviD~aKaia~~~~~~~~~~~~~~~~~-----~~~~~~~~P~i~IPTTagTGse~t~~avi~~~ 155 (379)
T TIGR02638 81 AFKASGADYLIAIGGGSPIDTAKAIGIISNNPEFADVRSLEGV-----APTKKPGVPIIAIPTTAGTAAEVTINYVITDE 155 (379)
T ss_pred HHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHhhCC-----CccCCCCCCEEEECCCCchhhhhCCEEEEEEC
Confidence 999999999999999999999999999887753 567787521 12234569999999999999999999999999
Q ss_pred CCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q psy2427 181 PLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260 (660)
Q Consensus 181 ~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la 260 (660)
+++.|..+.++.++|+.+|+||+++.++|++++++|++|+|+|++|+|++. ..
T Consensus 156 ~~~~K~~~~~~~~~P~~ai~Dp~l~~~lP~~~~a~t~~Dal~H~iEa~~s~-------------------~~-------- 208 (379)
T TIGR02638 156 ENKRKFVCVDPHDIPDVAVIDAEMMYSMPKSLTAATGMDALTHAIEGYITK-------------------GA-------- 208 (379)
T ss_pred CCCeeEEEeCCCccccEEEEChHhhcCCCHHHHHHHHHHHHHHHHHHHHhc-------------------CC--------
Confidence 888899999999999999999999999999999999999999999999872 23
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHh
Q psy2427 261 RFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVM 340 (660)
Q Consensus 261 ~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai 340 (660)
T Consensus 209 -------------------------------------------------------------------------------- 208 (379)
T TIGR02638 209 -------------------------------------------------------------------------------- 208 (379)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccccccc
Q psy2427 341 SAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLH 420 (660)
Q Consensus 341 ~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~ 420 (660)
T Consensus 209 -------------------------------------------------------------------------------- 208 (379)
T TIGR02638 209 -------------------------------------------------------------------------------- 208 (379)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q psy2427 421 TLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEAR 500 (660)
Q Consensus 421 ~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar 500 (660)
+|++|.+|.+++++|.++++++++||.|+++|
T Consensus 209 ------------------------------------------------~~~sd~~a~~a~~li~~~l~~~~~~~~~~~aR 240 (379)
T TIGR02638 209 ------------------------------------------------WELTDMLHLKAIEIIARWLRSAVEGGKDLEAR 240 (379)
T ss_pred ------------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHH
Confidence 34555666666666666677777778899999
Q ss_pred HHHHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHh
Q psy2427 501 SHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELL 580 (660)
Q Consensus 501 ~~~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~l 580 (660)
++|+|||++||++|+++|+|++|+|+|+|++.| ++|||.++++++|+||+||.+..++|+.+++++|
T Consensus 241 ~~l~~As~laG~a~~~~g~g~~Hal~~~l~~~~-------------~i~HG~a~ai~lp~vl~~~~~~~~~~~~~la~~~ 307 (379)
T TIGR02638 241 EQMALGQYVAGMGFSNVGLGLVHGMAHPLGAFY-------------NTPHGVANAILLPHVMEFNAEFTGEKYREIAKAM 307 (379)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhhhhhhcCc-------------CCChHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 999999999999999999999999999999874 7999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHH
Q psy2427 581 GADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLF 653 (660)
Q Consensus 581 g~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il 653 (660)
|....+.+.++.+..+++.+++|++++|+|++|+|+|+++++++.+++.++.+ ....+||+++|++++++||
T Consensus 308 g~~~~~~~~~~~~~~~~~~i~~l~~~lglp~~L~e~gv~~~~~~~~a~~a~~~-~~~~~nP~~~~~~~i~~i~ 379 (379)
T TIGR02638 308 GVKTEGMSDEEARDAAVEAVKTLSKRVGIPEGLSELGVKEEDIPALAEAALAD-VCTGGNPRETTVEEIEELY 379 (379)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHcCCCHHHHHHHHHHHHhC-cCcCCCCCCCCHHHHHHhC
Confidence 98766666777888899999999999999999999999999999999999854 4456799999999999986
No 7
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=100.00 E-value=1.4e-68 Score=578.65 Aligned_cols=379 Identities=28% Similarity=0.428 Sum_probs=335.7
Q ss_pred eeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHH
Q psy2427 22 YAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATK 101 (660)
Q Consensus 22 ~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~ 101 (660)
+.|.. |++|+||.|++++|+++++++|.+|++||+|+++.+.+..+++.+.|++.|+++.+|+++++||+.+.|+++++
T Consensus 3 ~~~~~-~~~i~~G~g~l~~l~~~~~~~g~~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~ 81 (382)
T PRK10624 3 NRMIL-NETAYFGRGAIGALTDEVKRRGFKKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVE 81 (382)
T ss_pred ccccC-CCeEEECcCHHHHHHHHHHhcCCCEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHH
Confidence 34555 48999999999999999999998999999999998888889999999999999999999999999999999999
Q ss_pred HhHhcCCCEEEEecCchhhhHHHHHHhHhcCCC-cchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeC
Q psy2427 102 FVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPE-AEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYE 180 (660)
Q Consensus 102 ~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~-~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~ 180 (660)
.+++.++|+||||||||++|+||++++.+.+++ .+++||... .+...+.+|+|+||||+|||||+|+.+|++++
T Consensus 82 ~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~-----~~~~~~~~p~i~VPTTagTGse~t~~avi~~~ 156 (382)
T PRK10624 82 VFKASGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGV-----APTKKPSVPIIAIPTTAGTAAEVTINYVITDE 156 (382)
T ss_pred HHHhcCCCEEEEeCChHHHHHHHHHHHHHHCCCCCCHHHHhCc-----CcccCCCCCEEEECCCCchhhhhcceeeeecC
Confidence 999999999999999999999999999888764 467887531 12234558999999999999999999999998
Q ss_pred CCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q psy2427 181 PLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260 (660)
Q Consensus 181 ~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la 260 (660)
+.+.|..+.++..+|+++|+||+++.++|++++++|++|+|+|++|+|++ ...+|++|.++
T Consensus 157 ~~~~k~~~~~~~~~P~~ailDp~l~~tlP~~~~a~~g~Dal~HaiE~y~s-------------------~~~~p~sd~~a 217 (382)
T PRK10624 157 EKRRKFVCVDPHDIPQVAFVDADMMDSMPPGLKAATGVDALTHAIEGYIT-------------------RGAWALTDMLH 217 (382)
T ss_pred CCCeeEEeeCccccCCEEEEChHhhcCCCHHHHHHHHHhHHHHHHHHHHc-------------------CCCCHHHHHHH
Confidence 88889999999999999999999999999999999999999999999988 24555555555
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHh
Q psy2427 261 RFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVM 340 (660)
Q Consensus 261 ~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai 340 (660)
+++++++.+++
T Consensus 218 ~~ai~~i~~~l--------------------------------------------------------------------- 228 (382)
T PRK10624 218 LKAIEIIAGAL--------------------------------------------------------------------- 228 (382)
T ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Confidence 55555555544
Q ss_pred hHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccccccc
Q psy2427 341 SAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLH 420 (660)
Q Consensus 341 ~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~ 420 (660)
T Consensus 229 -------------------------------------------------------------------------------- 228 (382)
T PRK10624 229 -------------------------------------------------------------------------------- 228 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q psy2427 421 TLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEAR 500 (660)
Q Consensus 421 ~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar 500 (660)
++++++ +.++|
T Consensus 229 -------------------------------------------------------------------~~~~~~--~~~aR 239 (382)
T PRK10624 229 -------------------------------------------------------------------RGAVAG--DKEAG 239 (382)
T ss_pred -------------------------------------------------------------------HHHHcC--CHHHH
Confidence 444444 23899
Q ss_pred HHHHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHh
Q psy2427 501 SHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELL 580 (660)
Q Consensus 501 ~~~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~l 580 (660)
++|+|||++||++|+++|++++|+|+|+||+.| ++|||.++++++|+||+||.+..++|++++++.|
T Consensus 240 ~~~~~as~laG~a~~~~g~g~~Hal~h~l~~~~-------------~ipHG~~~ai~lp~vl~~~~~~~~~k~~~la~~~ 306 (382)
T PRK10624 240 EGMALGQYIAGMGFSNVGLGLVHGMAHPLGAFY-------------NTPHGVANAILLPHVMEYNADFTGEKYRDIARAM 306 (382)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHhhhHHhhCC-------------CCChHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 999999999999999999999999999999974 7999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHHHHh
Q psy2427 581 GADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSM 657 (660)
Q Consensus 581 g~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~a~ 657 (660)
|...++.++++.+..+++++++|++++|+|++|+|+|+++++++.+++.++.+. ...+||+++|++|+++||+++|
T Consensus 307 g~~~~~~~~~~~~~~~~~~i~~l~~~lglp~~L~e~gv~~~~~~~~a~~a~~~~-~~~~nP~~~t~~~i~~i~~~~~ 382 (382)
T PRK10624 307 GVKVEGMSLEEARNAAVEAVKALNRDVGIPPHLRDVGVKEEDIPALAQAAFDDV-CTGGNPREATLEDIVELYKKAW 382 (382)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhCc-CCCCCCCCCCHHHHHHHHHHhC
Confidence 987666677788888999999999999999999999999999999999998543 3456999999999999999886
No 8
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=100.00 E-value=1.2e-68 Score=578.71 Aligned_cols=373 Identities=35% Similarity=0.542 Sum_probs=336.5
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
|++|+||.|++++++++++++|.+|++||||+++.+.+..+++.+.|++.++++.+|++++++|+.+.|+++++.+++.+
T Consensus 4 p~~i~~G~g~l~~l~~~l~~~~~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~ 83 (376)
T cd08193 4 PPRIVFGAGSLARLGELLAALGAKRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAG 83 (376)
T ss_pred CCeEEECcCHHHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcC
Confidence 58999999999999999999988999999999988887889999999999999999999999999999999999999999
Q ss_pred CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceee
Q psy2427 108 CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTG 187 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~ 187 (660)
+|+||||||||++|+||++|..+.++ .++|||... .+...+.+|+|+||||+|||||+|+++|+++.+ +.|.+
T Consensus 84 ~D~IIaiGGGs~iD~aK~ia~~~~~~-~~~~~~~~~-----~~~~~~~~p~i~IPTTagtgSe~t~~avi~~~~-~~K~~ 156 (376)
T cd08193 84 ADGVIGFGGGSSMDVAKLVAVLAGSD-QPLADMYGV-----DLVAGPRLPLILVPTTAGTGSEVTPIAIVTTPE-TLKVG 156 (376)
T ss_pred CCEEEEeCCchHHHHHHHHHHHHHCC-CCHHHHhCC-----CccCCCCCCEEEeCCCCcchHhhCCeEEEEcCC-CceEE
Confidence 99999999999999999999988775 678888632 123345689999999999999999999999887 89999
Q ss_pred eecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy2427 188 IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267 (660)
Q Consensus 188 ~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~i 267 (660)
+.++.++|+++|+||+++.++|++++++|++|+|+|++|+|++. .
T Consensus 157 ~~~~~~~P~~ai~Dp~l~~~lP~~~~~~~~~Dal~h~~E~y~s~-------------------~---------------- 201 (376)
T cd08193 157 VVSPHLLPDLAILDPELTLGLPPHITAATGIDAMVHAIEAYTSR-------------------K---------------- 201 (376)
T ss_pred eeCccccCCEEEEChHHHcCCCHHHHHHHhHHHHHHHHHHHHcC-------------------C----------------
Confidence 99999999999999999999999999999999999999999872 1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHH
Q psy2427 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFN 347 (660)
Q Consensus 268 ~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~ 347 (660)
T Consensus 202 -------------------------------------------------------------------------------- 201 (376)
T cd08193 202 -------------------------------------------------------------------------------- 201 (376)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCch
Q psy2427 348 FTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPER 427 (660)
Q Consensus 348 ~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~ 427 (660)
T Consensus 202 -------------------------------------------------------------------------------- 201 (376)
T cd08193 202 -------------------------------------------------------------------------------- 201 (376)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy2427 428 VTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLAS 507 (660)
Q Consensus 428 ~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as 507 (660)
..+|+++.+|+++++++.++++++++|+.|.++|++|+|||
T Consensus 202 ---------------------------------------~~~p~td~~a~~ai~~i~~~l~~a~~~~~~~~ar~~~~~As 242 (376)
T cd08193 202 ---------------------------------------KANPLSDLLALEALRLLGANIPRAVKDGDDLEAREAMLLGA 242 (376)
T ss_pred ---------------------------------------CCCHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 13455666666666666777777777788999999999999
Q ss_pred HHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCC
Q psy2427 508 AMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRV 587 (660)
Q Consensus 508 ~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~ 587 (660)
++||++|+++|++++|+|+|+|++.| ++|||+++++++|+||+||.+..++||.++++.+|....+.
T Consensus 243 ~laG~a~~~~g~g~~Hal~h~l~~~~-------------~i~HG~~~ai~lp~v~~~~~~~~~~~~~~l~~~l~~~~~~~ 309 (376)
T cd08193 243 MYAGQAFANAPVAAVHALAYPLGGKF-------------HIPHGLSNALVLPHVLRFNAPAAEERYAELADALGPDLAGA 309 (376)
T ss_pred HHHHHHHhhhhHHHHHHhcchhhcCc-------------CCChHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhCCCcCCC
Confidence 99999999999999999999999974 79999999999999999999999999999999998766655
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHH
Q psy2427 588 KKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFE 654 (660)
Q Consensus 588 ~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~ 654 (660)
++++.+..+++++++|++++|+|++|+|+|+++++++.+++.++.++....+||+++|++++++||+
T Consensus 310 ~~~~~~~~~~~~~~~l~~~lglp~~L~e~gi~~~~~~~~a~~a~~~~~~~~~nP~~~t~~~v~~i~~ 376 (376)
T cd08193 310 SDEEAAEALIDAMEALVADLGIPQRLREVGVTEDDLPMLAEDAMKQTRLLVNNPRELTEEDALAIYR 376 (376)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHhC
Confidence 6677888899999999999999999999999999999999999865555678999999999999984
No 9
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=100.00 E-value=1.9e-68 Score=578.46 Aligned_cols=386 Identities=33% Similarity=0.504 Sum_probs=347.4
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
|++|+||.|++++++++++++| +|++||+|+++.+.+.++++.+.|++.|+++.+|++++++|+.+++.+.++.+++.+
T Consensus 1 p~~i~fG~g~l~~l~~~~~~~g-~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~ 79 (386)
T cd08191 1 PGTLLFGAGQRRQLPRLAARLG-SRALIVTDERMAGTPVFAELVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAARAG 79 (386)
T ss_pred CCeEEECcCHHHHHHHHHHHcC-CeEEEEECcchhhcchHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcC
Confidence 5799999999999999999999 999999999988777889999999999999999999999999999999999999999
Q ss_pred CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceee
Q psy2427 108 CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTG 187 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~ 187 (660)
+|+||||||||++|+||+++..+.++ .++|||... .+...+.+|+|+||||+|||||+|+++|+++++.+.|.+
T Consensus 80 ~D~IIaiGGGS~iD~aK~ia~~~~~~-~~~~~~~~~-----~~~~~~~~p~i~IPTtagTGSE~t~~avi~~~~~~~K~~ 153 (386)
T cd08191 80 PDVIIGLGGGSCIDLAKIAGLLLAHG-GDVRDYYGE-----FKVPGPVLPLIAVPTTAGTGSEVTPVAVLTDPDNAMKVG 153 (386)
T ss_pred CCEEEEeCCchHHHHHHHHHHHHhCC-CCHHHHhCc-----cccCCCCCCEEEEeCCCcchhhhCCeEEEEeCCCCceEE
Confidence 99999999999999999999988876 678898632 123345689999999999999999999999988889999
Q ss_pred eecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy2427 188 IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267 (660)
Q Consensus 188 ~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~i 267 (660)
+.++.++|+++|+||+++.++|++++++|++|+|+|++|+|++. ..++++..
T Consensus 154 ~~~~~~~P~~~i~Dp~l~~~~P~~~~a~~g~Dal~h~iEa~~s~-------------------~~~~~~~~--------- 205 (386)
T cd08191 154 VASPHLRPAIAIIDPELTLTCPPGVTADSGADALTHAIESFTAM-------------------DRNPFPDG--------- 205 (386)
T ss_pred EeCCCcccCEEEECHHHhcCCCHHHHHHHHHHHHHHHHHHHhCC-------------------Cccccccc---------
Confidence 99999999999999999999999999999999999999999983 11110000
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHH
Q psy2427 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFN 347 (660)
Q Consensus 268 ~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~ 347 (660)
T Consensus 206 -------------------------------------------------------------------------------- 205 (386)
T cd08191 206 -------------------------------------------------------------------------------- 205 (386)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCch
Q psy2427 348 FTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPER 427 (660)
Q Consensus 348 ~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~ 427 (660)
T Consensus 206 -------------------------------------------------------------------------------- 205 (386)
T cd08191 206 -------------------------------------------------------------------------------- 205 (386)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy2427 428 VTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLAS 507 (660)
Q Consensus 428 ~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as 507 (660)
..++.+...||++|.+|+++++++.++++++++|+.|.++|++|+|||
T Consensus 206 --------------------------------~~~~~~~~~~p~sd~~a~~a~~li~~~l~~a~~~~~~~~ar~~~~~as 253 (386)
T cd08191 206 --------------------------------DADHVYSGKNALTDLFAREAIRLIGRSLPRAVRDGDDLEARTDMMLAA 253 (386)
T ss_pred --------------------------------cccccccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 000111267899999999999999999999999999999999999999
Q ss_pred HHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCC
Q psy2427 508 AMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRV 587 (660)
Q Consensus 508 ~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~ 587 (660)
++||++|+++|+|++|+|+|+||++| +++||+++++++|+||+||.+.+++||+++++++|....+.
T Consensus 254 ~laG~a~~~~~~g~~Hal~~~l~~~~-------------~i~HG~~~aillp~v~~~n~~~~~~k~~~~a~~~~~~~~~~ 320 (386)
T cd08191 254 LLAGLAFGTAGTAAVHALQYPVGALT-------------HTSHGFGVAALLPYVMRFNLPARREEFAEIGRVLGVAAGDH 320 (386)
T ss_pred HHHHHHHhccchHHHHHhhhhhhcCc-------------CCChHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999974 79999999999999999999999999999999999877666
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHH
Q psy2427 588 KKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLF 653 (660)
Q Consensus 588 ~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il 653 (660)
++++.+..+++++++|++++|+|++|+|+|+++++++++++.++..++...+||+++|++|+++||
T Consensus 321 ~~~~~~~~~~~~l~~l~~~lglP~~L~e~gv~~~~~~~~a~~a~~~~~~~~~nP~~~t~~~v~~i~ 386 (386)
T cd08191 321 SADEQAAAAITRVEALLAAIGIPTTLAALGVTEADLDGVAAQALAVTRLIKNNPRPLDEEDYRAIL 386 (386)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHhC
Confidence 667788889999999999999999999999999999999999986556667899999999999985
No 10
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=100.00 E-value=7.2e-68 Score=573.31 Aligned_cols=375 Identities=30% Similarity=0.431 Sum_probs=331.6
Q ss_pred ceEEECcChHHHHHHHHHhc---CCCEEEEEECccccc-cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhH
Q psy2427 29 STIRIGPGVTREVGMDMVNM---KAQRVCVMTDPHLSK-LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVR 104 (660)
Q Consensus 29 ~~i~~G~g~~~~l~~~l~~~---g~~r~liVtd~~~~~-~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~ 104 (660)
++|+||.|++++++++++++ |.+|++||+|+++.+ .+.++++.+.|++.|+++.+|++++++|+.++|+++++.++
T Consensus 2 t~i~fG~g~~~~l~~~l~~~~~~g~kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~ 81 (383)
T cd08186 2 TTLYFGVGAIEKIGEILKDLKSKGISKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGR 81 (383)
T ss_pred CeEEECcCHHHHHHHHHHHhcccCCCEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998 779999999998654 66679999999999999999999999999999999999999
Q ss_pred hcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCc
Q psy2427 105 SVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKA 184 (660)
Q Consensus 105 ~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~ 184 (660)
++++|+||||||||++|+||+++..+.+++.+.+++... .....+.+|+|+||||+|||||+|+++|+++...+.
T Consensus 82 ~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~-----~~~~~~~~P~iaIPTTagTGSE~t~~avi~~~~~~~ 156 (383)
T cd08186 82 EFGAQAVIAIGGGSPIDSAKSAAILLEHPGKTARDLYEF-----KFTPEKALPLIAINLTHGTGTEVDRFAVASIDETEE 156 (383)
T ss_pred HcCCCEEEEeCCccHHHHHHHHHHHHhCCCCcHHHHhCC-----CcccCCCCCEEEEeCCChhhhhhCCeEEEEEcCCCc
Confidence 999999999999999999999999998776667776521 122345689999999999999999999999988889
Q ss_pred eeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q psy2427 185 KTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFAL 264 (660)
Q Consensus 185 K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai 264 (660)
|.++.++.++|+++|+||+++.++|++++++|++|+|+|++|+|++. .
T Consensus 157 K~~~~~~~~~P~~ai~Dp~l~~~~P~~~~a~tg~DAl~HaiE~~~s~-------------------~------------- 204 (383)
T cd08186 157 KPGIAYDCIYPDYSIDDPALTTTLPPDQTIYTSIDALNHVVEAATTT-------------------T------------- 204 (383)
T ss_pred eEEEeCCccccCEEEEChHHhcCCCHHHHHHHHHHHHHHHHHHHHcC-------------------C-------------
Confidence 99999999999999999999999999999999999999999999872 2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHH
Q psy2427 265 QTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPA 344 (660)
Q Consensus 265 ~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~ 344 (660)
T Consensus 205 -------------------------------------------------------------------------------- 204 (383)
T cd08186 205 -------------------------------------------------------------------------------- 204 (383)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCC
Q psy2427 345 VFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSL 424 (660)
Q Consensus 345 ~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~ 424 (660)
T Consensus 205 -------------------------------------------------------------------------------- 204 (383)
T cd08186 205 -------------------------------------------------------------------------------- 204 (383)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy2427 425 PERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMH 504 (660)
Q Consensus 425 P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~ 504 (660)
.||++|.+|+++++++.++++++++|+.|.++|++|+
T Consensus 205 -------------------------------------------~~~~sd~~a~~a~~li~~~l~~a~~~~~~~~ar~~m~ 241 (383)
T cd08186 205 -------------------------------------------ANPYSILLAKEAVRLIAEYLPKALEEPDNLQARYWLL 241 (383)
T ss_pred -------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 2455666677777777777777777888999999999
Q ss_pred HHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCC
Q psy2427 505 LASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADV 584 (660)
Q Consensus 505 ~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~ 584 (660)
|||++||++|+++|+|++|+|+|+||+++ | ++|||+++++++|+||+||.+..++||+++++.+|...
T Consensus 242 ~as~laG~a~~~~~~g~~Hai~~~l~~~~-------~-----~ipHG~~~aillp~vl~~n~~~~~~~~~~la~~~~~~~ 309 (383)
T cd08186 242 YASAIAGIAIDNGLLHLTHALEHPLSALK-------P-----DLPHGAGLAILLPAVVKHIYPATPEILAELLRPLVPGL 309 (383)
T ss_pred HHHHHHHHHHhcchhHHHHHhcCchhcCC-------C-----CCChHHHHHHHHHHHHHHhhhhCHHHHHHHHHHhCccc
Confidence 99999999999999999999999999862 1 69999999999999999999999999999999998554
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCC---CCCCCccCCHHHHHHHHHHHh
Q psy2427 585 SRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRI---TKLAPREQSEEDLANLFENSM 657 (660)
Q Consensus 585 ~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~---~~~~P~~~t~e~i~~il~~a~ 657 (660)
.+. .+.+..+++++++|++++|+|++|+|+|+++++++.+++.++.+... ..+||+++|+|++++||+++|
T Consensus 310 ~~~--~~~a~~~i~~l~~l~~~lglP~~L~~~gv~~~~~~~~a~~a~~~~~~~~~~~~nP~~~t~e~i~~il~~~~ 383 (383)
T cd08186 310 KGV--PEEAEKAAKAVEKWLFSIGITEKLSDYGFTEGDVEKLTELAVTTPSLKLLLSLAPVEASREVIARIYTDSL 383 (383)
T ss_pred CCc--hHHHHHHHHHHHHHHHHCCCCCCHHHcCCCHHHHHHHHHHHHhcccccccccCCCCCCCHHHHHHHHHHhC
Confidence 322 23456789999999999999999999999999999999998754332 357999999999999999875
No 11
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=100.00 E-value=6.2e-68 Score=573.03 Aligned_cols=377 Identities=30% Similarity=0.493 Sum_probs=337.1
Q ss_pred eeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHH
Q psy2427 22 YAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATK 101 (660)
Q Consensus 22 ~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~ 101 (660)
|.|.+ |++|+||.|++++++++++++|.+|++||+|+++.+.+..+++.+.|++.|+++.+|++++++|+.+.|+++++
T Consensus 1 ~~~~~-p~~i~~G~g~l~~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~ 79 (377)
T cd08176 1 NRFYL-PPTNLFGAGAIKEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLA 79 (377)
T ss_pred CcccC-CCeEEECcCHHHHHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHH
Confidence 34555 59999999999999999999998999999999988777889999999999999999999999999999999999
Q ss_pred HhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCC
Q psy2427 102 FVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEP 181 (660)
Q Consensus 102 ~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~ 181 (660)
.++++++|+||||||||+||+||+++..+.++ .++||+... .+...+.+|+|+||||+|||||+|+.+|+++++
T Consensus 80 ~~~~~~~D~IIavGGGS~iD~aK~ia~~~~~~-~~~~~~~~~-----~~~~~~~~P~i~IPTtagTgSe~t~~avi~~~~ 153 (377)
T cd08176 80 VFKKEGCDFIISIGGGSPHDCAKAIGIVATNG-GDIRDYEGV-----AKSKKPAVPIVAINTTAGTASEVTINYVITDEE 153 (377)
T ss_pred HHHhcCCCEEEEeCCcHHHHHHHHHHHHHhCC-CCHHHHhCc-----CccCCCCCCEEEeCCCCcchhccCCcEEEEEcC
Confidence 99999999999999999999999999988876 678887532 123345599999999999999999999999988
Q ss_pred CCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q psy2427 182 LKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWAR 261 (660)
Q Consensus 182 ~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~ 261 (660)
.+.|.++.++.++|+.+|+||+++.++|++++++|++|+|+|++|+|++. ..+
T Consensus 154 ~~~K~~~~~~~~~P~~~ivDp~l~~~~P~~~~a~~~~Dal~h~~E~~~s~-------------------~~~-------- 206 (377)
T cd08176 154 RKVKMVIVDPNDIPIVAVNDPELMVGMPPGLTAATGMDALTHAIEAYVST-------------------GAN-------- 206 (377)
T ss_pred CCceeEEeCccccCCEEEEChHhhcCCCHHHHHHHHHHHHHHHHHHHHcC-------------------CCC--------
Confidence 88899999999999999999999999999999999999999999999872 233
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhh
Q psy2427 262 FALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMS 341 (660)
Q Consensus 262 ~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~ 341 (660)
T Consensus 207 -------------------------------------------------------------------------------- 206 (377)
T cd08176 207 -------------------------------------------------------------------------------- 206 (377)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccc
Q psy2427 342 APAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHT 421 (660)
Q Consensus 342 l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~ 421 (660)
T Consensus 207 -------------------------------------------------------------------------------- 206 (377)
T cd08176 207 -------------------------------------------------------------------------------- 206 (377)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q psy2427 422 LSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARS 501 (660)
Q Consensus 422 ~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~ 501 (660)
|+++.+|+++++++.++++++++++.|.++|+
T Consensus 207 ------------------------------------------------~~s~~~a~~a~~~i~~~l~~~~~~~~~~~ar~ 238 (377)
T cd08176 207 ------------------------------------------------PITDACALKAIELIAKNLRRAVANGKDLEARE 238 (377)
T ss_pred ------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 44555666666666667777777788899999
Q ss_pred HHHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhC
Q psy2427 502 HMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLG 581 (660)
Q Consensus 502 ~~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg 581 (660)
+|+||+++||++++++|+|++|+|+|.|++.+ +++||+++++++|+||+||.+..++|+++++++||
T Consensus 239 ~l~~as~laG~a~~~~g~g~~Hal~h~l~~~~-------------~i~HG~~~ai~lp~vl~~~~~~~~~k~~~~a~~lg 305 (377)
T cd08176 239 GMAYAQYLAGMAFNNAGLGYVHSMAHQLGGFY-------------DLPHGVCNAILLPHVMEYNAPACPERFADIAEAMG 305 (377)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHhhhhHhhcC-------------CCChHHHHHHHHHHHHHHhhhcCHHHHHHHHHHhC
Confidence 99999999999999999999999999999874 79999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHH
Q psy2427 582 ADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFE 654 (660)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~ 654 (660)
........++.+..+++++++|++++|+|++|+|+|+++++++.+++.++.+.. ..+||+++|++++++||+
T Consensus 306 ~~~~~~~~~~~~~~~~~~i~~l~~~lglP~~L~e~gv~~~~~~~~a~~a~~~~~-~~~~p~~~t~~~i~~il~ 377 (377)
T cd08176 306 VDTEGLSDEEAAEAAIDAVRALSEDVGIPAGLRELGVKEEDFELLAENALKDAC-AGGNPRKATKEDIIAIYK 377 (377)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhCcC-CCCCCCCCCHHHHHHHhC
Confidence 866555566777788999999999999999999999999999999999985544 567999999999999985
No 12
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=100.00 E-value=1e-67 Score=571.00 Aligned_cols=372 Identities=31% Similarity=0.514 Sum_probs=334.2
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
|++|+||.|++++++++++++|.+|++||+|+++.+.++.+++.+.|++.|+++.+|++++++|+.+.|+++++.+++.+
T Consensus 6 ~~~i~~G~g~l~~l~~~l~~~g~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~ 85 (377)
T cd08188 6 APEIIFGRGALKLAGRYARRLGAKKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENG 85 (377)
T ss_pred CCceEECcCHHHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcC
Confidence 46899999999999999999998999999999988877889999999999999999999999999999999999999999
Q ss_pred CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceee
Q psy2427 108 CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTG 187 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~ 187 (660)
+|+||||||||++|+||+++..+.++ .+.|||... .+...+.+|+|+||||+|||||+|+++|+++.+.+.|.+
T Consensus 86 ~d~IIaiGGGsviD~AK~ia~~~~~~-~~~~~~~~~-----~~~~~~~~p~i~IPTT~gTgSE~t~~avi~d~~~~~K~~ 159 (377)
T cd08188 86 CDVIIAVGGGSPIDCAKGIGIVASNG-GHILDFEGV-----DKITRPLPPLICIPTTAGSGADVSQFAIITDTERKVKMA 159 (377)
T ss_pred CCEEEEeCCchHHHHHHHHHHHHHCC-CCHHHHhCc-----ccccCCCCCEEEECCCCccccccCCeEEEEeCCCCeeEE
Confidence 99999999999999999999988765 567887632 123445689999999999999999999999988889999
Q ss_pred eecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy2427 188 IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267 (660)
Q Consensus 188 ~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~i 267 (660)
+.++.++|+++|+||+++.++|++++++|++|+|+|++|+|++ ...|
T Consensus 160 i~~~~~~P~~vi~Dp~l~~~lP~~~~~~~~~Dal~haiE~~~s-------------------~~~~-------------- 206 (377)
T cd08188 160 IISKSLVPDIALIDPETLTTMPPELTAATGLDALTHAIEAYVS-------------------NASS-------------- 206 (377)
T ss_pred EeCccccCCEEEECHHHHcCCCHHHHHHHHHHHHHHHHHHHHc-------------------CCCC--------------
Confidence 9999999999999999999999999999999999999999987 2334
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHH
Q psy2427 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFN 347 (660)
Q Consensus 268 ~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~ 347 (660)
T Consensus 207 -------------------------------------------------------------------------------- 206 (377)
T cd08188 207 -------------------------------------------------------------------------------- 206 (377)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCch
Q psy2427 348 FTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPER 427 (660)
Q Consensus 348 ~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~ 427 (660)
T Consensus 207 -------------------------------------------------------------------------------- 206 (377)
T cd08188 207 -------------------------------------------------------------------------------- 206 (377)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy2427 428 VTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLAS 507 (660)
Q Consensus 428 ~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as 507 (660)
|++|.+|+++++++.++++++++|+.|.++|++|+|||
T Consensus 207 ------------------------------------------~~sd~~a~~a~~~i~~~L~~~~~~~~~~~ar~~l~~As 244 (377)
T cd08188 207 ------------------------------------------PLTDLHALEAIRLIAANLPPAIANPTDLEARESMMLAS 244 (377)
T ss_pred ------------------------------------------HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44555555566666666666667788899999999999
Q ss_pred HHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCC
Q psy2427 508 AMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRV 587 (660)
Q Consensus 508 ~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~ 587 (660)
++||++|+|+|++++|+|+|+||+.| ++|||+++++++|+||+||.+..++||++++++||....+.
T Consensus 245 ~laG~a~~~~~~g~~Hal~~~l~~~~-------------~i~HG~~~ai~lp~vl~~~~~~~~~~~~~la~~~g~~~~~~ 311 (377)
T cd08188 245 LQAGLAFSNAILGAVHAMAHSLGGLL-------------DLPHGECNAILLPHVMEFNYPAAPERYARIAEALGLDVRGL 311 (377)
T ss_pred HHHHHHHhchhHHHHHHHhhhhhhCc-------------CCChHHHHHHHHHHHHHhhhhcCHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999874 79999999999999999999999999999999999877666
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHH
Q psy2427 588 KKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFE 654 (660)
Q Consensus 588 ~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~ 654 (660)
+.++.+..+++++++|++++|+|++|+|+|+++++++.+++.++.+ ....+||+++|++++++||+
T Consensus 312 ~~~~~~~~~~~~i~~l~~~lglp~~L~e~gv~~~~~~~ia~~a~~~-~~~~~~p~~~~~~~i~~il~ 377 (377)
T cd08188 312 TTEEAALAVIEAVRRLRAALGVPETLGDLGVKREDIPLLARNALKD-ACMVTNPRDATVEDIEAIYE 377 (377)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhC-cccCCCCCCCCHHHHHHHhC
Confidence 6677788899999999999999999999999999999999999854 44567999999999999985
No 13
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=100.00 E-value=2.6e-67 Score=567.65 Aligned_cols=372 Identities=30% Similarity=0.476 Sum_probs=335.8
Q ss_pred ccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc
Q psy2427 27 ASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV 106 (660)
Q Consensus 27 ~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~ 106 (660)
.|++|+||.|++++|+++++++|.+|++||+|+++++.+.++++.+.|++.|+++.+|+++++||+.+.|+++++.+++.
T Consensus 3 ~p~~i~~G~g~l~~l~~~l~~~g~~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~ 82 (374)
T cd08189 3 PKPKLFVGSGSLAQLPAAISQLGVKKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYREN 82 (374)
T ss_pred CCceEEECcCHHHHHHHHHHhcCCCeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhc
Confidence 36899999999999999999999899999999998887778999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCcee
Q psy2427 107 QCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKT 186 (660)
Q Consensus 107 ~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~ 186 (660)
++|+||||||||++|+||+++..+.++..+++||... .+...+.+|+|+||||+|||||+|+++|+++++.+.|.
T Consensus 83 ~~d~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~-----~~~~~~~~p~i~VPTtagTGsE~t~~avi~d~~~~~K~ 157 (374)
T cd08189 83 GCDAILAVGGGSVIDCAKAIAARAANPKKSLRKLTGL-----LKVKKPLPPLFAIPTTAGTGSEVTIAAVISDPETHEKY 157 (374)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHhCCCCCHHHHhCc-----cccCCCCCCEEEEECCCccccccCCeEEEEecCCCeeE
Confidence 9999999999999999999999998875578888632 23445669999999999999999999999998888899
Q ss_pred eeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy2427 187 GIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQT 266 (660)
Q Consensus 187 ~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~ 266 (660)
++.++..+|+++|+||+++.++|++++++|++|+|+|++|+|++. ..
T Consensus 158 ~~~~~~~~P~~~i~Dp~l~~t~P~~~~~a~g~Dal~h~iE~~~s~-------------------~~-------------- 204 (374)
T cd08189 158 AISDPRLLPKAAALDPRLTLGLPPHITAATGMDALTHAVEAYIGR-------------------NA-------------- 204 (374)
T ss_pred EEeCCCccCCEEEEChHhhcCCCHHHHHHHHHHHHHHHHHHHHcC-------------------CC--------------
Confidence 999999999999999999999999999999999999999999872 22
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHH
Q psy2427 267 IRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVF 346 (660)
Q Consensus 267 i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l 346 (660)
T Consensus 205 -------------------------------------------------------------------------------- 204 (374)
T cd08189 205 -------------------------------------------------------------------------------- 204 (374)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCc
Q psy2427 347 NFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPE 426 (660)
Q Consensus 347 ~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~ 426 (660)
T Consensus 205 -------------------------------------------------------------------------------- 204 (374)
T cd08189 205 -------------------------------------------------------------------------------- 204 (374)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy2427 427 RVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLA 506 (660)
Q Consensus 427 ~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~a 506 (660)
+|+++.+|+++++++.++++++++|++|+++|++|+||
T Consensus 205 ------------------------------------------~~~s~~~a~~a~~~i~~~l~~a~~~~~~~~ar~~l~~a 242 (374)
T cd08189 205 ------------------------------------------TPESDAYALAAIKLIFENLPKAYEDGSNLEAREAMALA 242 (374)
T ss_pred ------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34556666666666777777777778899999999999
Q ss_pred HHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCC
Q psy2427 507 SAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSR 586 (660)
Q Consensus 507 s~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~ 586 (660)
+++||++|+++|++++|+|+|.|++.| +++||.++++++|+||+||.+..++|+.++++.||.+..+
T Consensus 243 s~lag~a~~~~g~g~~Hal~h~l~~~~-------------~i~HG~~~ai~lp~v~~~~~~~~~~~~~~la~~~g~~~~~ 309 (374)
T cd08189 243 SYYAGLAFTRAGVGYVHAIAHQLGGVY-------------GIPHGLANAIVLPHVLEFYGDAAEDRLAELADALGLGDAG 309 (374)
T ss_pred HHHHHHHHhcccHHHHHHhhhhhhcCC-------------CCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999974 7999999999999999999999999999999999987666
Q ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHH
Q psy2427 587 VKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLF 653 (660)
Q Consensus 587 ~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il 653 (660)
.++++.+..+++++++|++++|+|++|+| +++++++.+++.++.+.....+||+++|+|++++||
T Consensus 310 ~~~~~~~~~~i~~i~~l~~~lglP~~L~~--v~~~~~~~~a~~a~~~~~~~~~~p~~~~~e~i~~i~ 374 (374)
T cd08189 310 ESDSDLAAAFIDAVRELNRTLGIPTTLEA--IKASDIPAIAKRALKEANPLYPVPKLMDREECEQIL 374 (374)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCCchh--CCHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHhC
Confidence 66778888899999999999999999999 799999999999986544556899999999999986
No 14
>PRK15138 aldehyde reductase; Provisional
Probab=100.00 E-value=3.3e-67 Score=567.17 Aligned_cols=381 Identities=20% Similarity=0.289 Sum_probs=333.1
Q ss_pred CCceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECcc-ccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHH
Q psy2427 19 DKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPH-LSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFL 97 (660)
Q Consensus 19 ~~~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~-~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~ 97 (660)
|..|.|.+ |++|+||.|++++++++++. + +|++||||+. ....+..+++.+.|+ ++++.+|+++++||+.+.|+
T Consensus 1 m~~f~~~~-P~~i~~G~g~~~~l~~~l~~-~-~~~livt~~~~~~~~g~~~~v~~~L~--~~~~~~f~~v~~~p~~~~v~ 75 (387)
T PRK15138 1 MNNFNLHT-PTRILFGKGAIAGLREQIPA-D-ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPTYETLM 75 (387)
T ss_pred CCCcEEeC-CceEEECcCHHHHHHHHHhc-C-CeEEEECCCchHHhcCcHHHHHHHhc--CCeEEEECCccCCCCHHHHH
Confidence 45577776 58999999999999999987 5 8999999865 555677899999996 78899999999999999999
Q ss_pred HHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCC-cchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceE
Q psy2427 98 EATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPE-AEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSI 176 (660)
Q Consensus 98 ~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~-~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~av 176 (660)
++++.+++.++|+||||||||+||+||+++..+.+++ .+.++++.. . .....+.+|+|+||||+|||||+|+++|
T Consensus 76 ~~~~~~~~~~~D~IIaiGGGS~iD~AK~ia~~~~~~~~~~~~~~~~~---~-~~~~~~~~P~iaVPTTaGTGSE~t~~av 151 (387)
T PRK15138 76 KAVKLVREEKITFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILET---G-GKEIKSAIPMGSVLTLPATGSESNAGAV 151 (387)
T ss_pred HHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHHHhc---c-CCCcCCCCCEEEEecCCccccccCCCEE
Confidence 9999999999999999999999999999998876654 267777521 1 1223455899999999999999999999
Q ss_pred EeeCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHH
Q psy2427 177 FDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVS 256 (660)
Q Consensus 177 i~~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s 256 (660)
+++.+.+.|..+.++..+|+++|+||+++.++|++++++|++|+|+|++|+|++. .
T Consensus 152 it~~~~~~K~~~~~~~~~P~~aivDP~l~~~~P~~~taatg~DAl~haiE~y~s~-------------------~----- 207 (387)
T PRK15138 152 ISRKTTGDKQAFHSPHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTY-------------------P----- 207 (387)
T ss_pred EEecCCCeeeeecCcchheeEEEECcHHhcCCCHHHHHHHHHHHHHHHHHHHhcC-------------------C-----
Confidence 9988888999999999999999999999999999999999999999999999872 0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchh
Q psy2427 257 DVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGL 336 (660)
Q Consensus 257 ~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~ 336 (660)
T Consensus 208 -------------------------------------------------------------------------------- 207 (387)
T PRK15138 208 -------------------------------------------------------------------------------- 207 (387)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccc
Q psy2427 337 SVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLI 416 (660)
Q Consensus 337 avai~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~ 416 (660)
T Consensus 208 -------------------------------------------------------------------------------- 207 (387)
T PRK15138 208 -------------------------------------------------------------------------------- 207 (387)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy2427 417 DPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDD 496 (660)
Q Consensus 417 d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~ 496 (660)
..+|++|.+|+++++++.+++++++.|+.|
T Consensus 208 --------------------------------------------------~~~~~td~~A~~a~~~i~~~l~~a~~~~~~ 237 (387)
T PRK15138 208 --------------------------------------------------VDAKIQDRFAEGILLTLIEEGPKALKEPEN 237 (387)
T ss_pred --------------------------------------------------CCChHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 123466777777788888888888888899
Q ss_pred HHHHHHHHHHHHHHhHhhhcccch---hhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHH
Q psy2427 497 LEARSHMHLASAMAGVGFGNAGVH---LCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERH 573 (660)
Q Consensus 497 ~~ar~~~~~as~~ag~~~~~~g~~---~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~ 573 (660)
.++|++|+|||++||++|+++|++ ++|+|+|+||+.| ++|||.++++++|+||+||.+..++||
T Consensus 238 ~~aR~~m~~as~lag~a~~~~g~~~~~~~Hal~h~lg~~~-------------~i~HG~~~ai~lP~vl~~~~~~~~~k~ 304 (387)
T PRK15138 238 YDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAMH-------------GLDHAQTLAIVLPALWNEKRDTKRAKL 304 (387)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCchhhhhcchhhhcc-------------CCchHHHHHHHHHHHHHHhhhhCHHHH
Confidence 999999999999999999999988 7899999999974 799999999999999999999999999
Q ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHH
Q psy2427 574 IEAAELL-GADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANL 652 (660)
Q Consensus 574 ~~ia~~l-g~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~i 652 (660)
+++++.+ |. .+.++++.+..+++++++|++++|+|++|+|+|++++|++.+++.++.+.....+||+++|++++++|
T Consensus 305 ~~~a~~~~~~--~~~~~~~~~~~~i~~i~~l~~~lg~p~~L~~~gv~~~d~~~~a~~a~~~~~~~~~np~~~~~~~i~~i 382 (387)
T PRK15138 305 LQYAERVWNI--TEGSDDERIDAAIAATRNFFEQMGVPTRLSDYGLDGSSIPALLKKLEEHGMTQLGEHHDITLDVSRRI 382 (387)
T ss_pred HHHHHHHcCC--CCCChHHHHHHHHHHHHHHHHHcCCCCcHHHcCCCHHHHHHHHHHHHhcCcccCCCCCCCCHHHHHHH
Confidence 9999865 44 23345567788999999999999999999999999999999999998554444579999999999999
Q ss_pred HHHHh
Q psy2427 653 FENSM 657 (660)
Q Consensus 653 l~~a~ 657 (660)
|+++|
T Consensus 383 l~~~~ 387 (387)
T PRK15138 383 YEAAR 387 (387)
T ss_pred HHhcC
Confidence 99987
No 15
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=100.00 E-value=4.2e-67 Score=566.17 Aligned_cols=371 Identities=34% Similarity=0.534 Sum_probs=334.1
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
|++|+||.|++++++++++++|.+|++||||+++.+.+..+++.+.|++.|+++.+|+++++||+.+.|+++++.+++.+
T Consensus 1 P~~i~~G~g~~~~l~~~~~~~~~~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~ 80 (375)
T cd08194 1 PRTIIIGEGAVDETGAVLADLGGKRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGG 80 (375)
T ss_pred CCeEEECcCHHHHHHHHHHHcCCCeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcC
Confidence 58999999999999999998888999999999988877889999999999999999999999999999999999999999
Q ss_pred CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceee
Q psy2427 108 CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTG 187 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~ 187 (660)
+|+||||||||++|+||+++..+.++ .++|||... .+...+.+|+|+||||+|||||+|+++|+++.+.+.|.+
T Consensus 81 ~D~IIaiGGGS~~D~AKaia~~~~~~-~~~~~~~~~-----~~~~~~~~P~i~IPTtagtGsE~t~~avi~~~~~~~K~~ 154 (375)
T cd08194 81 CDVIIALGGGSPIDTAKAIAVLATNG-GSIRDYKGP-----RIVDKPGLPLIAIPTTAGTGSEVTRFTVITDTKTDEKML 154 (375)
T ss_pred CCEEEEeCCchHHHHHHHHHHHHhCC-CCHHHHhCc-----ccccCCCCCEEEECCCCccccccCCeEEEEECCCCceEE
Confidence 99999999999999999999988776 578888631 223445699999999999999999999999988889999
Q ss_pred eecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy2427 188 IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267 (660)
Q Consensus 188 ~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~i 267 (660)
+.++.++|+++|+||+++.++|++++++|++|+|+|++|+|++. ..
T Consensus 155 ~~~~~~~P~~~i~Dp~l~~~~P~~~~aatg~Dal~h~iE~~~s~-------------------~~--------------- 200 (375)
T cd08194 155 LKGLALLPKAAIVDPELTLTSPPRVTAATGIDALTHAIEAYVSR-------------------KA--------------- 200 (375)
T ss_pred EeCCcccCCEEEEChHHHcCCCHHHHHHHHHHHHHHHHHHHHcC-------------------CC---------------
Confidence 99999999999999999999999999999999999999999872 23
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHH
Q psy2427 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFN 347 (660)
Q Consensus 268 ~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~ 347 (660)
T Consensus 201 -------------------------------------------------------------------------------- 200 (375)
T cd08194 201 -------------------------------------------------------------------------------- 200 (375)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCch
Q psy2427 348 FTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPER 427 (660)
Q Consensus 348 ~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~ 427 (660)
T Consensus 201 -------------------------------------------------------------------------------- 200 (375)
T cd08194 201 -------------------------------------------------------------------------------- 200 (375)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy2427 428 VTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLAS 507 (660)
Q Consensus 428 ~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as 507 (660)
+|+++.+|+++++++.++++++++|++|.++|++|+||+
T Consensus 201 -----------------------------------------~~~s~~~a~~a~~li~~~l~~a~~~~~~~~ar~~l~~as 239 (375)
T cd08194 201 -----------------------------------------QPMTDLFALSAIKLIGKNLRTAYLNPDNREAREEMMLGA 239 (375)
T ss_pred -----------------------------------------CHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345556666666666677777777788899999999999
Q ss_pred HHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCC
Q psy2427 508 AMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRV 587 (660)
Q Consensus 508 ~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~ 587 (660)
++||++++++|+|++|+|+|+|++.| ++|||+++++++|+||+||.+..++||++++++||....+.
T Consensus 240 ~laG~a~~~~~~g~~Hal~~~l~~~~-------------~i~HG~~~ai~lp~v~~~~~~~~~~~~~~~a~~lg~~~~~~ 306 (375)
T cd08194 240 TEAGIAFSNASVALVHGMSRPIGALF-------------HVPHGLSNAMLLPAVTEFSLPSAPERYADIARAMGEANEGD 306 (375)
T ss_pred HHHHHHHhchhHHHHHHhhhhhhhCC-------------CCChHHHHHHHHHHHHHhhcccCHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999874 79999999999999999999999999999999999876656
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCc----HHHHHHhhccCCCCCCCCCccCCHHHHHHHHH
Q psy2427 588 KKADAGKLLADTVRGYMDQMKIENGLKVLGYTSAD----IPALVTGTLPQHRITKLAPREQSEEDLANLFE 654 (660)
Q Consensus 588 ~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~----i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~ 654 (660)
++++.+..+++++++|++++|+| +|+|+|+++++ ++.+++.++.+ ....+||+++|++++++||+
T Consensus 307 ~~~~~~~~~~~~i~~l~~~~glP-~L~~~gv~~~~~~~~l~~~a~~a~~~-~~~~~~p~~~~~~~i~~i~~ 375 (375)
T cd08194 307 SDREAAEKLIEALKELNRELEVP-TLREYGIDKDAFMALIPKMAEDAIAS-GSPANNPRVPTKAEIIELYE 375 (375)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCC-CHHhcCCChHhhhhhHHHHHHHHHhC-cCCCCCCCCCCHHHHHHHhC
Confidence 66778888999999999999999 59999999998 99999999855 34468999999999999985
No 16
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=100.00 E-value=1.7e-66 Score=562.73 Aligned_cols=375 Identities=32% Similarity=0.537 Sum_probs=330.2
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccc-cccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHL-SKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV 106 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~-~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~ 106 (660)
|++|+||.|++++++++++++| +|++||||+.+ ...+..+++.+.|++.|+++.+|+++++||+.++|+++++.++++
T Consensus 4 p~~i~fG~g~l~~l~~~~~~~g-~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~ 82 (380)
T cd08185 4 PTKIVFGAGKLNELGEEALKPG-KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREE 82 (380)
T ss_pred CCeEEECcCHHHHHHHHHHhcC-CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHc
Confidence 6899999999999999999988 99999999986 466788999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCcee
Q psy2427 107 QCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKT 186 (660)
Q Consensus 107 ~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~ 186 (660)
++|+||||||||+||+||+++..+.++ .+.|||+......+.+...+.+|+|+||||+|||||+|+++|+++++++.|.
T Consensus 83 ~~D~IiavGGGS~iD~aK~ia~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE~t~~avi~~~~~~~K~ 161 (380)
T cd08185 83 GCDFVVGLGGGSSMDTAKAIAFMAANE-GDYWDYIFGGTGKGKPPPEKALPIIAITTTAGTGSEADPWAVITNPETKEKI 161 (380)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHhhCC-CCHHHHhcccccccccCCCCCCCEEEEcCCChhhhccCCeEEEEcCCCCeeE
Confidence 999999999999999999999988776 6788886432111113445569999999999999999999999998888999
Q ss_pred eeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy2427 187 GIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQT 266 (660)
Q Consensus 187 ~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~ 266 (660)
++.++.++|+++|+||+++.++|++++++|++|+|+|++|+|++. ..
T Consensus 162 ~~~~~~~~P~~ailDp~l~~~~P~~~~aatg~Dal~h~iEa~~s~-------------------~~-------------- 208 (380)
T cd08185 162 GLGHPATFPKISIVDPELMLTVPPHLTAYTGFDAFFHAFEAYIAN-------------------NA-------------- 208 (380)
T ss_pred EecCCCccccEEEEChHHhcCCCHHHHHHHHHHHHHHHHHHHHcC-------------------CC--------------
Confidence 999999999999999999999999999999999999999999871 22
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHH
Q psy2427 267 IRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVF 346 (660)
Q Consensus 267 i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l 346 (660)
T Consensus 209 -------------------------------------------------------------------------------- 208 (380)
T cd08185 209 -------------------------------------------------------------------------------- 208 (380)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCc
Q psy2427 347 NFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPE 426 (660)
Q Consensus 347 ~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~ 426 (660)
T Consensus 209 -------------------------------------------------------------------------------- 208 (380)
T cd08185 209 -------------------------------------------------------------------------------- 208 (380)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy2427 427 RVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLA 506 (660)
Q Consensus 427 ~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~a 506 (660)
||+++.+|+++++++.++++++++|+.|.++|++|+||
T Consensus 209 ------------------------------------------~~~s~~~a~~a~~li~~~l~~a~~~~~~~~ar~~~~~a 246 (380)
T cd08185 209 ------------------------------------------NPMSDMLALEAIELIAKYLPRAVKDGSDLEAREKMAWA 246 (380)
T ss_pred ------------------------------------------ChHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34556666777777777777777788899999999999
Q ss_pred HHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCC
Q psy2427 507 SAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSR 586 (660)
Q Consensus 507 s~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~ 586 (660)
+++||++|+++|+|++|+|+|.||++| ++++||+++++++|+||+||.+..++||.++++.++..
T Consensus 247 s~laG~a~~~~g~g~~Hai~~~l~~~~------------~~i~HG~~~ai~lp~vl~~~~~~~~~~~~~la~~~~~~--- 311 (380)
T cd08185 247 NTLGGMVEANSGCTSPHALEHALSGLH------------PDLPHGAGLAMLSPAYFEFFARKAPEKFAFVARAEAAG--- 311 (380)
T ss_pred HHHHHHHHcCccchhhhHhhChHhccC------------CCCChHHHHHHHhHHHHHHhhhhCHHHHHHHHHhccCC---
Confidence 999999999999999999999999863 26999999999999999999999999999999865422
Q ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCC-CCCCCCCccCCHHHHHHHHH
Q psy2427 587 VKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQH-RITKLAPREQSEEDLANLFE 654 (660)
Q Consensus 587 ~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~-~~~~~~P~~~t~e~i~~il~ 654 (660)
..+.+.+..+++++++|++++|+|++|+|+|+++++++++++.++.+. ....+||+++|++++++||+
T Consensus 312 ~~~~~~~~~~~~~i~~~~~~lglP~~L~e~gv~~~~~~~~a~~a~~~~~~~~~~nP~~~t~~~~~~i~~ 380 (380)
T cd08185 312 LEDEEAAEDFIEALRKLLKRIGLDDLLSDLGVTKEDIPKLADNARETMGGLFEADPAELTREDIEEIYE 380 (380)
T ss_pred CChHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHHhcccccCCCCCcCCHHHHHHHhC
Confidence 234566677899999999999999999999999999999999998542 34567999999999999984
No 17
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=100.00 E-value=1.2e-65 Score=554.61 Aligned_cols=369 Identities=31% Similarity=0.455 Sum_probs=327.2
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
|++|+||.|++++++++++++|.+|++||+|+++.+.+..+++.+.|++.|+++.+|++++++|+.+.|+++++.+++.+
T Consensus 2 p~~i~~G~g~~~~l~~~l~~~g~~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~ 81 (370)
T cd08192 2 PTRIRFGAGAIKELPAECAELGIKRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGG 81 (370)
T ss_pred CceEEECcCHHHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcC
Confidence 68999999999999999999998999999999988877789999999999999999999999999999999999999999
Q ss_pred CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceee
Q psy2427 108 CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTG 187 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~ 187 (660)
+|+||||||||++|+||+++..+.++ .+++||.....+.. +...+.+|+|+||||+|||||+|+++|+++++.+.|.+
T Consensus 82 ~d~IIaiGGGSviD~aK~ia~~~~~~-~~~~~~~~~~~~~~-~~~~~~~p~i~VPTtagtgse~t~~avi~~~~~~~K~~ 159 (370)
T cd08192 82 CDGVIAFGGGSALDLAKAVALMAGHP-GPLWDYEDIEGGWP-RITDAIPPLIAIPTTAGTGSEVGRAAVITDEDTGRKLI 159 (370)
T ss_pred CCEEEEeCCchHHHHHHHHHHHHhCC-CCHHHHhccccccc-ccCCCCCCEEEecCCCchhhhhCCceEEEeCCCCeeEE
Confidence 99999999999999999999988775 57888874322221 22345689999999999999999999999988889999
Q ss_pred eecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy2427 188 IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267 (660)
Q Consensus 188 ~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~i 267 (660)
+.++.++|+++|+||+++.++|++++++|++|+|+|++|+|++ ...
T Consensus 160 ~~~~~~~P~~~i~Dp~l~~~~P~~~~a~~~~Dal~h~~E~~~s-------------------~~~--------------- 205 (370)
T cd08192 160 IFSPHLLPKAAICDPELTLGLPAGLTAATGMDALTHCIEAYLS-------------------PGF--------------- 205 (370)
T ss_pred eeCCcccCCEEEEChhhhhCCCHHHHHHHHHHHHHHHHHHHhc-------------------CCC---------------
Confidence 9999999999999999999999999999999999999999987 223
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHH
Q psy2427 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFN 347 (660)
Q Consensus 268 ~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~ 347 (660)
T Consensus 206 -------------------------------------------------------------------------------- 205 (370)
T cd08192 206 -------------------------------------------------------------------------------- 205 (370)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCch
Q psy2427 348 FTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPER 427 (660)
Q Consensus 348 ~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~ 427 (660)
T Consensus 206 -------------------------------------------------------------------------------- 205 (370)
T cd08192 206 -------------------------------------------------------------------------------- 205 (370)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy2427 428 VTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLAS 507 (660)
Q Consensus 428 ~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as 507 (660)
||+++.+|+++++++.++++++++|++|+++|++|+||+
T Consensus 206 -----------------------------------------~~~s~~~a~~a~~~~~~~l~~~~~~~~~~~ar~~~~~as 244 (370)
T cd08192 206 -----------------------------------------NPMADGIALEGLRLISRHLERAVRDGGDLEARGGMMMAA 244 (370)
T ss_pred -----------------------------------------CHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345566666666666666677777788999999999999
Q ss_pred HHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCC
Q psy2427 508 AMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRV 587 (660)
Q Consensus 508 ~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~ 587 (660)
++||++|++ |+|++|+|+|+|++.| +++||.++++++|+||+||.+..++|++++++.++..
T Consensus 245 ~laG~a~~~-~~g~~Hal~h~l~~~~-------------~i~HG~~~ai~lp~v~~~~~~~~~~k~~~~a~~~~~~---- 306 (370)
T cd08192 245 SMGAMAFQK-GLGAVHSLSHPLGALY-------------NLHHGLLNAVLLPYVLRFNRPAIEEKIARLARALAMG---- 306 (370)
T ss_pred HHHHHHHhh-ccHHHHHhhhHHhhCC-------------CCChHHHHHHHHHHHHHHhhhcCHHHHHHHHHHhCCc----
Confidence 999999987 9999999999999974 7999999999999999999999999999999988643
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHH
Q psy2427 588 KKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFE 654 (660)
Q Consensus 588 ~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~ 654 (660)
.+.+..+++++++|++++|+|++|+|+|+++++++.+++.++.+.. ..+||+++|++++++||+
T Consensus 307 --~~~~~~~~~~i~~l~~~lglp~~L~e~gv~~~~~~~~a~~a~~~~~-~~~np~~~~~~~i~~i~~ 370 (370)
T cd08192 307 --LGGFADFADAILALNARLGIPHTLRELGVDEDDLDRIAEKALADPS-HATNPRPATAEDYRALLE 370 (370)
T ss_pred --hhHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhCcc-cCCCCCCCCHHHHHHHhC
Confidence 1345567899999999999999999999999999999999985544 457999999999999985
No 18
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=100.00 E-value=1.8e-65 Score=553.22 Aligned_cols=365 Identities=31% Similarity=0.457 Sum_probs=319.3
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
|++|+||.|++++++++++++| +|++||||+++. ..+++.+.|++.|+++.+|+ +.++|+.+.|+++++.+++++
T Consensus 1 P~~i~~G~g~~~~l~~~l~~~~-~r~livtd~~~~---~~~~v~~~L~~~g~~~~~~~-~~~~p~~~~v~~~~~~~~~~~ 75 (374)
T cd08183 1 PPRIHFGRGVAKELPALAAELG-RRVLLVTGASSL---RAAWLIEALRAAGIEVTHVV-VAGEPSVELVDAAVAEARNAG 75 (374)
T ss_pred CCeEEECcCHHHHHHHHHHHcC-CcEEEEECCchH---HHHHHHHHHHHcCCeEEEec-CCCCcCHHHHHHHHHHHHhcC
Confidence 5899999999999999999986 999999999876 56899999999999999887 667999999999999999999
Q ss_pred CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceee
Q psy2427 108 CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTG 187 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~ 187 (660)
+|+||||||||++|+||+++..+.++ .+.|||+.. .+...+...+.+|+|+||||+|||||+|+++|+++++.+.|.+
T Consensus 76 ~D~IIaiGGGS~~D~aK~ia~~~~~~-~~~~~~~~~-~~~~~~~~~~~~p~i~VPTtagTGSE~t~~avi~~~~~~~K~~ 153 (374)
T cd08183 76 CDVVIAIGGGSVIDAGKAIAALLPNP-GSVLDYLEG-VGRGLPLDGPPLPFIAIPTTAGTGSEVTKNAVISVPGAGFKVS 153 (374)
T ss_pred CCEEEEecCchHHHHHHHHHHHHcCC-CCHHHHHhc-cCccccCCCCCCCEEEecCCCchhHHhCCeEEEEecCCCeeEE
Confidence 99999999999999999999988775 578888632 1122234456699999999999999999999999988899999
Q ss_pred eecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy2427 188 IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267 (660)
Q Consensus 188 ~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~i 267 (660)
+.++..+|+++|+||+++.++|++++++|++|+|+|++|+|++. ..
T Consensus 154 ~~~~~~~P~~ai~Dp~l~~~lP~~~~aatg~Dal~ha~E~~~s~-------------------~~--------------- 199 (374)
T cd08183 154 LRHPRMLPDVAIVDPELTLSCPRSVTAASGLDALTQLLEPYLSP-------------------RA--------------- 199 (374)
T ss_pred eecccccCCEEEEChHHhcCCChhhHHHHHHHHHHHHHHHHHcC-------------------CC---------------
Confidence 99999999999999999999999999999999999999999872 23
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHH
Q psy2427 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFN 347 (660)
Q Consensus 268 ~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~ 347 (660)
T Consensus 200 -------------------------------------------------------------------------------- 199 (374)
T cd08183 200 -------------------------------------------------------------------------------- 199 (374)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCch
Q psy2427 348 FTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPER 427 (660)
Q Consensus 348 ~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~ 427 (660)
T Consensus 200 -------------------------------------------------------------------------------- 199 (374)
T cd08183 200 -------------------------------------------------------------------------------- 199 (374)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy2427 428 VTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLAS 507 (660)
Q Consensus 428 ~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as 507 (660)
||+++.+|+++++++.++++++++|+.|+++|++|+|||
T Consensus 200 -----------------------------------------~p~sd~~a~~ai~~i~~~l~~a~~~~~~~~ar~~~~~as 238 (374)
T cd08183 200 -----------------------------------------NPLTDALCRSGLPRGARALRRACENGEDAAARDDMALAS 238 (374)
T ss_pred -----------------------------------------ChHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 445566666666666666667777788999999999999
Q ss_pred HHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHH---------HH
Q psy2427 508 AMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEA---------AE 578 (660)
Q Consensus 508 ~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~i---------a~ 578 (660)
++||++|+++|+|++|+|+|+||++| ++|||+++++++|+||+||.+..++++.++ ++
T Consensus 239 ~laG~a~~~~g~g~~Hai~h~lg~~~-------------~i~HG~a~ai~lp~vl~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (374)
T cd08183 239 LLGGIALANAGLGAVHGLAGPIGGLF-------------DAPHGAICATLLPPVLAANIRALRQRGPGNPALAAYREVAG 305 (374)
T ss_pred HHHHHHHhhhhhHHHHHhhchhhcCC-------------CCChHHHHHHHHHHHHHHhhhhCchhhhhhhhHHHHHHHHH
Confidence 99999999999999999999999974 799999999999999999999999876544 44
Q ss_pred HhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHH
Q psy2427 579 LLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFE 654 (660)
Q Consensus 579 ~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~ 654 (660)
.+|. +.++.+..+++++++|++++|+| +|+|+|+++++++.+++.++.+ ....+||+++|+|++++||+
T Consensus 306 ~~~~-----~~~~~a~~~~~~l~~l~~~lglP-~L~e~gv~~~~~~~ia~~a~~~-~~~~~~p~~~t~~~i~~i~~ 374 (374)
T cd08183 306 LLTG-----NLEAAADDLVEWLEHWVDELGLP-RLSDYGLTPDDLDAVVEAAAGS-SSMKGNPVPLSDAELLEILE 374 (374)
T ss_pred HhCC-----ChHHHHHHHHHHHHHHHHHcCCC-ChhhcCCCHHHHHHHHHHHHhC-ccccCCCCCCCHHHHHHHhC
Confidence 4443 34566778899999999999999 9999999999999999999754 45678999999999999985
No 19
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=100.00 E-value=1.7e-64 Score=547.16 Aligned_cols=376 Identities=22% Similarity=0.316 Sum_probs=332.3
Q ss_pred eeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECcccc-ccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHH
Q psy2427 22 YAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLS-KLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEAT 100 (660)
Q Consensus 22 ~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~-~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~ 100 (660)
|.|.. |++|+||.|++++++++++++| +|++||+|+... ..+..+++.+.|++.|+++.+|+++++||+.+.|++++
T Consensus 2 ~~~~~-p~~i~~G~g~~~~l~~~~~~~~-~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~ 79 (382)
T cd08187 2 FTFYN-PTKIIFGKGTESELGKELKKYG-KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGI 79 (382)
T ss_pred CeecC-CCEEEECCCHHHHHHHHHHHhC-CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHH
Confidence 45655 5999999999999999999996 999999998654 45677999999999999999999999999999999999
Q ss_pred HHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeC
Q psy2427 101 KFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYE 180 (660)
Q Consensus 101 ~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~ 180 (660)
+.++++++|+||||||||+||+||+++..+.++ .+++||...+ +...+.+|+|+||||+|||||+|+++|++++
T Consensus 80 ~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~-~~~~~~~~~~-----~~~~~~~P~iaIPTTagTGsE~t~~avi~~~ 153 (382)
T cd08187 80 ELCKEEKVDFILAVGGGSVIDSAKAIAAGAPYD-GDVWDFFTGK-----AKIEKALPVGTVLTLAATGSEMNGGAVITNE 153 (382)
T ss_pred HHHHHcCCCEEEEeCChHHHHHHHHHHhHhhCC-CCHHHHhccc-----CCCCCCCCEEEEeCCCchhhccCCCEEEecc
Confidence 999999999999999999999999999988764 6788886421 2334568999999999999999999999998
Q ss_pred CCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q psy2427 181 PLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260 (660)
Q Consensus 181 ~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la 260 (660)
+.+.|.++.++.++|+.+|+||+++.++|++++++|++|+|+|++|+|++. .
T Consensus 154 ~~~~K~~~~~~~~~P~~~i~Dp~l~~~~P~~~~aatg~Dal~h~~E~~~s~-------------------~--------- 205 (382)
T cd08187 154 ETKEKLGFGSPLLRPKFSILDPELTYTLPKYQTANGIVDIFSHVMEQYFTY-------------------P--------- 205 (382)
T ss_pred ccCccccccCCCcCceEEEEChHHhccCCHHHHHHHHHHHHHHHHHHHhCC-------------------C---------
Confidence 888899999999999999999999999999999999999999999999872 1
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHh
Q psy2427 261 RFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVM 340 (660)
Q Consensus 261 ~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai 340 (660)
T Consensus 206 -------------------------------------------------------------------------------- 205 (382)
T cd08187 206 -------------------------------------------------------------------------------- 205 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccccccc
Q psy2427 341 SAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLH 420 (660)
Q Consensus 341 ~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~ 420 (660)
T Consensus 206 -------------------------------------------------------------------------------- 205 (382)
T cd08187 206 -------------------------------------------------------------------------------- 205 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q psy2427 421 TLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEAR 500 (660)
Q Consensus 421 ~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar 500 (660)
..+|+++.+|+++++++.++++++++|+.|.++|
T Consensus 206 ----------------------------------------------~~~~~~~~~a~~a~~li~~~l~~a~~~~~~~~ar 239 (382)
T cd08187 206 ----------------------------------------------VDADLQDRLAEGLLKTVIENGPKALKNPEDYEAR 239 (382)
T ss_pred ----------------------------------------------CCCchHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 1245666777777778888888888888899999
Q ss_pred HHHHHHHHHHhHhhhcccc---hhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHH
Q psy2427 501 SHMHLASAMAGVGFGNAGV---HLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAA 577 (660)
Q Consensus 501 ~~~~~as~~ag~~~~~~g~---~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia 577 (660)
++|++|++++|+++.+.|. +++|+|+|+|++.| +++||+++++++|+||+||.+..++|+++++
T Consensus 240 ~~l~~as~lag~a~~~~g~~~~~~~Hal~~~l~~~~-------------~i~HG~~~ai~lp~v~~~n~~~~~~~~~~la 306 (382)
T cd08187 240 ANIMWAATLALNGLIGVGRPQDWATHMIEHELSALY-------------DIAHGAGLAIVTPAWMRYVYKEKPAKFAQFA 306 (382)
T ss_pred HHHHHHHHHHHHHHhccCCCCCcccchhccHhhcCc-------------CCCcHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 9999999999999988765 68999999999874 7999999999999999999999999999999
Q ss_pred H-HhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHH
Q psy2427 578 E-LLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFE 654 (660)
Q Consensus 578 ~-~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~ 654 (660)
+ ++|... +.++++.+..+++++++|++++|+|++|+|+|+++++++++++.++.+. ...+||+++|++++++||+
T Consensus 307 ~~~~g~~~-~~~~~~~~~~~~~~i~~l~~~lglP~~L~~~gv~~~~l~~~a~~a~~~~-~~~~nP~~~t~~~i~~i~~ 382 (382)
T cd08187 307 KRVWGIEP-EGDDEETALEGIEATEEFFKSLGLPTTLSELGIGEEDIDEMAEKATANG-GLGGGFKKLTKEDIREILK 382 (382)
T ss_pred HHHcCCCC-CCCHHHHHHHHHHHHHHHHHHcCCCCcHHHcCCCHHHHHHHHHHHHhcC-cccCCCCCCCHHHHHHHhC
Confidence 7 677654 3456677888899999999999999999999999999999999998654 4456899999999999984
No 20
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=100.00 E-value=3e-64 Score=547.70 Aligned_cols=374 Identities=30% Similarity=0.456 Sum_probs=323.1
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
|++|+||.|++++++..+. +.+|++||+|+++.+.++.+++.+.|++.|+++.+|++++++|+.+.|+++++.+++.+
T Consensus 1 p~~I~fG~g~~~~l~~~~~--~~~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~ 78 (398)
T cd08178 1 PPKIYFERGSLPYALLDLK--GKKRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFK 78 (398)
T ss_pred CCeEEECcCHHHHHHHHhc--CCCeEEEEcChhHHhCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcC
Confidence 5799999999999995443 55899999999988888889999999999999999999999999999999999999999
Q ss_pred CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCC-----CCCCCCCcEEEEcCCCCcCccccCceEEeeCCC
Q psy2427 108 CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGK-----PVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPL 182 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~-----~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~ 182 (660)
+|+||||||||++|+||++|..+.++..++++++....+.++ +...+.+|+|+||||+|||||+|+++|+++.+.
T Consensus 79 ~D~IIaiGGGS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~I~VPTTagTGSE~t~~avi~~~~~ 158 (398)
T cd08178 79 PDTIIALGGGSPMDAAKIMWLFYEHPEVDFEDLAQKFMDIRKRIYKFPKLGKKAKLVAIPTTSGTGSEVTPFAVITDEKT 158 (398)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHhCCCcchhHhhhhhcccccccccccccCCCCCEEEeCCCCcccccccCeEEEEecCC
Confidence 999999999999999999999888776666654211111111 111256899999999999999999999999888
Q ss_pred CceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q psy2427 183 KAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARF 262 (660)
Q Consensus 183 ~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ 262 (660)
+.|.++.++.++|+++|+||+++.++|++++++|++|+|+|++|+|++. ..
T Consensus 159 ~~K~~~~~~~~~P~~~i~Dp~l~~tlP~~~~aatg~Dal~haiE~~~s~-------------------~~---------- 209 (398)
T cd08178 159 GVKYPLADYALTPDMAIVDPELVMTMPKSLTADTGIDALTHALEAYVSV-------------------MA---------- 209 (398)
T ss_pred CeeEEeeCccccCCEEEECcHhhcCCCHHHHHHHHHHHHHHHHHHhhcC-------------------CC----------
Confidence 8999999999999999999999999999999999999999999999872 22
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhH
Q psy2427 263 ALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSA 342 (660)
Q Consensus 263 ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l 342 (660)
T Consensus 210 -------------------------------------------------------------------------------- 209 (398)
T cd08178 210 -------------------------------------------------------------------------------- 209 (398)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccccccccc
Q psy2427 343 PAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTL 422 (660)
Q Consensus 343 ~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~ 422 (660)
T Consensus 210 -------------------------------------------------------------------------------- 209 (398)
T cd08178 210 -------------------------------------------------------------------------------- 209 (398)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q psy2427 423 SLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSH 502 (660)
Q Consensus 423 ~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~ 502 (660)
+|+++.+|+++++++.++++++++++.|.++|++
T Consensus 210 ----------------------------------------------~~~sd~~a~~a~~~i~~~l~~a~~~~~d~~ar~~ 243 (398)
T cd08178 210 ----------------------------------------------SDFTDGLALQAIKLIFEYLPRSYKNGADPEAREK 243 (398)
T ss_pred ----------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3455566666666666667777777788999999
Q ss_pred HHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCC-------------
Q psy2427 503 MHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASS------------- 569 (660)
Q Consensus 503 ~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~------------- 569 (660)
|+|||++||+++++++++++|+|+|+|++.| +++||+++++++|+||+||.+.+
T Consensus 244 ~~~as~laG~a~~~~~lg~~Hal~h~l~~~~-------------~i~HG~a~ai~lp~vl~~~~~~~~~~~~~~~~~~~~ 310 (398)
T cd08178 244 MHNAATIAGMAFANAFLGICHSMAHKLGAEF-------------HIPHGLANAILLPHVIRYNATDPPVKQAAFPQYKYP 310 (398)
T ss_pred HHHHHHHHHHHhcccchhhhhhhhhhhccCC-------------CCChHHHHHHHHHHHHHhhccccccccccccccccc
Confidence 9999999999999999999999999999974 79999999999999999998765
Q ss_pred --HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcH----HHHHHhhccCCCCCCCCCcc
Q psy2427 570 --PERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADI----PALVTGTLPQHRITKLAPRE 643 (660)
Q Consensus 570 --~~~~~~ia~~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i----~~ia~~a~~~~~~~~~~P~~ 643 (660)
++||+++++.||... .++.+.+..+++++++|++++|+|++|+|+|++++++ +.+++.++.+ ....+||++
T Consensus 311 ~~~~~~~~la~~lg~~~--~~~~~~~~~~~~~i~~l~~~lglp~~L~~~gv~~~~~~~~~~~~a~~a~~~-~~~~~nP~~ 387 (398)
T cd08178 311 KAKERYAEIARFLGLPG--KTDEEKVESLIKAIEELKKKLGIPKSIKDAGVDEEDFLAKVDELAELAFDD-QCTGANPRY 387 (398)
T ss_pred chHHHHHHHHHHcCCCC--CCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHhhHHHHHHHHHhC-cCCCCCCCC
Confidence 689999999999753 2455677888999999999999999999999998765 9999999854 345679999
Q ss_pred CCHHHHHHHHH
Q psy2427 644 QSEEDLANLFE 654 (660)
Q Consensus 644 ~t~e~i~~il~ 654 (660)
+|++|+++||+
T Consensus 388 ~~~~~i~~i~~ 398 (398)
T cd08178 388 PLISELKQLLL 398 (398)
T ss_pred CCHHHHHHHhC
Confidence 99999999984
No 21
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=100.00 E-value=2.1e-64 Score=544.33 Aligned_cols=365 Identities=30% Similarity=0.416 Sum_probs=320.8
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
|++|+||.|++++++++++++|.+|++||||+++. ..+.+.+.|++.++++.+|++++++|+.++|+++++.+++++
T Consensus 1 P~~i~~G~g~l~~l~~~~~~~g~~~~livtd~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 77 (367)
T cd08182 1 PVRIIFGRGAIAKLPSLLKGLGGKRVLLVTGPRSA---IASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFG 77 (367)
T ss_pred CCeEEECcCHHHHHHHHHHhcCCCeEEEEeCchHH---HHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcC
Confidence 58999999999999999999998999999999886 347889999999999999999999999999999999999999
Q ss_pred CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceee
Q psy2427 108 CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTG 187 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~ 187 (660)
+|+||||||||++|+||+++..+.+++. .++++. ..+...+...+.+|+|+||||+|||||+|+++|+++.+++.|.+
T Consensus 78 ~D~IIavGGGs~~D~aK~ia~~~~~~~~-~~~~~~-~~~~~~~~~~~~~p~i~VPTtagtgse~t~~avi~~~~~~~K~~ 155 (367)
T cd08182 78 PDAVLAVGGGSVLDTAKALAALLGAPRE-ALEDLR-IRNKERENRERALPLIAIPTTAGTGSEVTPFATVWDGKKGIKYS 155 (367)
T ss_pred cCEEEEeCCcHHHHHHHHHHHHHhCCCc-HHHHHH-HhccCCCCCCCCCCEEEeCCCCCchhhhCCEEEEEECCCCeeee
Confidence 9999999999999999999999887643 444421 00112233445699999999999999999999999988899999
Q ss_pred eecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy2427 188 IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267 (660)
Q Consensus 188 ~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~i 267 (660)
+.++..+|+.+|+||+++.++|++++++|++|+|+|++|+|++. ..
T Consensus 156 ~~~~~~~P~~~i~Dp~l~~t~P~~~~a~~~~Dal~h~~E~~~s~-------------------~~--------------- 201 (367)
T cd08182 156 LAGPALYPDTAIVDPELTLSLPPYQTASTGLDALAHAIESYWSK-------------------NS--------------- 201 (367)
T ss_pred ecCCcccCCEEEEChHHhcCCCHHHHHHHHHHHHHHHHHHHHHc-------------------CC---------------
Confidence 99999999999999999999999999999999999999999872 22
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHH
Q psy2427 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFN 347 (660)
Q Consensus 268 ~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~ 347 (660)
T Consensus 202 -------------------------------------------------------------------------------- 201 (367)
T cd08182 202 -------------------------------------------------------------------------------- 201 (367)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCch
Q psy2427 348 FTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPER 427 (660)
Q Consensus 348 ~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~ 427 (660)
T Consensus 202 -------------------------------------------------------------------------------- 201 (367)
T cd08182 202 -------------------------------------------------------------------------------- 201 (367)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy2427 428 VTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLAS 507 (660)
Q Consensus 428 ~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as 507 (660)
+|+++.+|+++++++.++++++++|+.|.++|++|+||+
T Consensus 202 -----------------------------------------~~~td~~a~~a~~~i~~~l~~a~~~~~~~~ar~~l~~as 240 (367)
T cd08182 202 -----------------------------------------TPESRAYARRAIRLILENLPPLLDEPGNLEARAKMAEAS 240 (367)
T ss_pred -----------------------------------------CHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345556666666666667777777788899999999999
Q ss_pred HHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHH--HHHHhCCCCC
Q psy2427 508 AMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIE--AAELLGADVS 585 (660)
Q Consensus 508 ~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~--ia~~lg~~~~ 585 (660)
++||++++++|++++|+|+|+|++.+ +++||+++|+++|++++||.+..++|+++ ++++||.+
T Consensus 241 ~laG~a~~~~~~g~~H~l~h~l~~~~-------------~i~HG~~~a~~lp~v~~~~~~~~~~~~~~~~i~~~~~~~-- 305 (367)
T cd08182 241 LLAGLAISNTRTTAAHAISYPLTSRY-------------GVPHGLACALTLPALLRINLEALPEDLALEAILAAFGAP-- 305 (367)
T ss_pred HHHHHHHhchhHHHHHHHhchhhcCC-------------CCChHHHHHHHHHHHHHHhhhhChHhhhhHHHHHHhCcc--
Confidence 99999999999999999999999874 79999999999999999999999999999 99999863
Q ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHH
Q psy2427 586 RVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFE 654 (660)
Q Consensus 586 ~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~ 654 (660)
.+..+++++++|++++|+|++|+|+|+++++++.+++.++.+ ....+||+++|+|++++||+
T Consensus 306 ------~~~~~~~~i~~l~~~~glp~~L~e~gv~~~~~~~~a~~a~~~-~~~~~~p~~~t~e~i~~i~~ 367 (367)
T cd08182 306 ------SAAEAAARIEALLKELGLPTRLAEYIVTREDIARLVAEAFTP-ERLDNNPVDLDEADLERLLE 367 (367)
T ss_pred ------cHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhc-ccccCCCCCCCHHHHHHHhC
Confidence 234568999999999999999999999999999999999854 33568999999999999985
No 22
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=100.00 E-value=6.1e-65 Score=548.76 Aligned_cols=366 Identities=37% Similarity=0.565 Sum_probs=316.1
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
|++|+||.|++++++++++++| |++||||+.+.+.+..+++.+.|++.++++.+|+++.++|+.+.|+++++.+++++
T Consensus 1 P~~i~~G~g~l~~l~~~l~~~g--r~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 78 (366)
T PF00465_consen 1 PTKIIFGRGALEELGEELKRLG--RVLVVTDPSLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFG 78 (366)
T ss_dssp ESEEEESTTGGGGHHHHHHCTT--EEEEEEEHHHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTT
T ss_pred CCcEEEccCHHHHHHHHHHhcC--CEEEEECchHHhCccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcC
Confidence 6899999999999999999997 99999999877777889999999999999999999999999999999999999999
Q ss_pred CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceee
Q psy2427 108 CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTG 187 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~ 187 (660)
+|+||||||||+||+||+++..+.++ .+++||. +.......+.+|+|+||||+|||||+|+++++++++++.|.+
T Consensus 79 ~D~IIaiGGGS~~D~aK~va~~~~~~-~~~~~~~----~~~~~~~~~~~p~i~IPTt~gtGsE~t~~avi~d~~~~~k~~ 153 (366)
T PF00465_consen 79 ADCIIAIGGGSVMDAAKAVALLLANP-GDLRDLL----GKGPPPTKPALPLIAIPTTAGTGSEVTPYAVIYDEEGGRKLS 153 (366)
T ss_dssp SSEEEEEESHHHHHHHHHHHHHHTSS-SCGGGGG----CECSCCSS--SEEEEEESSSSSSGCCSSEEEEEETTTTEEEE
T ss_pred CCEEEEcCCCCcCcHHHHHHhhccCC-CcHHHHH----hhccccccCCCcEEEeeCCccccccccccccccccccceecc
Confidence 99999999999999999999999876 5588886 234455666799999999999999999999999998899999
Q ss_pred eecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy2427 188 IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267 (660)
Q Consensus 188 ~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~i 267 (660)
+.++.++|+.+|+||+++.++|++++++|++|+|+|++|+|++ ...+|+++.
T Consensus 154 ~~~~~~~P~~~i~Dp~l~~~lP~~~~~~~~~dal~haiE~~~s-------------------~~~~~~s~~--------- 205 (366)
T PF00465_consen 154 IRSPKLYPDAAILDPELTATLPPRLTASGGLDALAHAIEAYLS-------------------PKANPLSDA--------- 205 (366)
T ss_dssp EEEGGGS-SEEEEEGGGGTTS-HHHHHHHHHHHHHHHHHHHHS-------------------TTT-HHHHH---------
T ss_pred ccCcccCcceeEecHHhhcCCCHHHHhhhHHHHHHHHHHHHhh-------------------cccCcccHH---------
Confidence 9999999999999999999999999999999999999999998 234554444
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHH
Q psy2427 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFN 347 (660)
Q Consensus 268 ~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~ 347 (660)
T Consensus 206 -------------------------------------------------------------------------------- 205 (366)
T PF00465_consen 206 -------------------------------------------------------------------------------- 205 (366)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCch
Q psy2427 348 FTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPER 427 (660)
Q Consensus 348 ~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~ 427 (660)
T Consensus 206 -------------------------------------------------------------------------------- 205 (366)
T PF00465_consen 206 -------------------------------------------------------------------------------- 205 (366)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy2427 428 VTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLAS 507 (660)
Q Consensus 428 ~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as 507 (660)
++.++++++.++++.++.|+.|.++|++|++|+
T Consensus 206 -----------------------------------------------~a~~ai~li~~~l~~~~~~~~~~~ar~~l~~as 238 (366)
T PF00465_consen 206 -----------------------------------------------LALQAIRLIFENLPRAVADPEDLEARENLALAS 238 (366)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred -----------------------------------------------HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 445555555555555555667788999999999
Q ss_pred HHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCC
Q psy2427 508 AMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRV 587 (660)
Q Consensus 508 ~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~ 587 (660)
++||++++++|++++|+|+|.|+..+ +++||.++++++|++++|+.+.+++++.++++.||.+....
T Consensus 239 ~laG~a~~~~~~g~~Hal~~~l~~~~-------------~v~HG~~~a~~lp~v~~~~~~~~~~~~~~l~~~l~~~~~~~ 305 (366)
T PF00465_consen 239 TLAGLAISNAGTGAAHALSHALGARY-------------GVPHGEAVAILLPHVLRFNAPSAPEKLARLAKALGVDTEGG 305 (366)
T ss_dssp HHHHHHHHHHT--HHHHHHHHHHHHH-------------TS-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTHCTTS-
T ss_pred hhccccccccccccccccccccccce-------------eecchhhhhcccHHHHHHHHHhhHHHHHHHHHhcCCCccCC
Confidence 99999999999999999999999874 79999999999999999999999999999999999886666
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHH
Q psy2427 588 KKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDL 649 (660)
Q Consensus 588 ~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i 649 (660)
+.++.++.+++++++|++++|+|++|+|+|+++++++++++.++.... ..+||+++|+|||
T Consensus 306 ~~~~~a~~~~~~l~~l~~~lglp~~l~~~gi~~~~l~~ia~~a~~~~~-~~~~P~~l~~e~i 366 (366)
T PF00465_consen 306 SAEEAADDAIDELRALLRSLGLPTRLSDLGIDEEDLDEIAEAALADQR-MKNNPRPLTREDI 366 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--SSGGGGT-TGGGHHHHHHHHTCTGG-GGGSSS---HHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCHHHcCCCHHHHHHHHHHHHhCcc-ccCCCCCCCHHhC
Confidence 778889999999999999999999999999999999999999996644 7899999999986
No 23
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=100.00 E-value=1.2e-63 Score=539.25 Aligned_cols=366 Identities=27% Similarity=0.403 Sum_probs=316.2
Q ss_pred EEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccc-cccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHH
Q psy2427 24 FEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHL-SKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKF 102 (660)
Q Consensus 24 ~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~-~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~ 102 (660)
|.. |++|+||.|+++++++. +.+|++||+|++. ...++.+++.+.|++.|+++.+|+++++||+.+.|+++++.
T Consensus 2 ~~~-p~~i~~G~g~l~~l~~~----~~~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~ 76 (375)
T cd08179 2 FTL-PRDIYFGKGSLEYLKTL----KGKKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEA 76 (375)
T ss_pred ccC-CceEEECcCHHHHHHHh----cCCeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHH
Confidence 444 58999999999998653 3489999999874 45678899999999999999999999999999999999999
Q ss_pred hHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCC
Q psy2427 103 VRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPL 182 (660)
Q Consensus 103 ~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~ 182 (660)
++++++|+||||||||+||+||++|..+.+++.+.+++... ...+...+.+|+|+||||+|||||+|+++|+++++.
T Consensus 77 ~~~~~~D~IIavGGGSviD~AK~ia~~~~~~~~~~~~~~~~---~~~~~~~~~~p~iaIPTtagTGSE~t~~avi~~~~~ 153 (375)
T cd08179 77 MREFEPDWIIALGGGSPIDAAKAMWIFYEYPELTFEDIVKP---FTLPELRNKARFCAIPSTSGTATEVTAFSVITDYEK 153 (375)
T ss_pred HHhcCCCEEEEeCCccHHHHHHHHHHHHhCCCcCHHHHhcc---ccccccCCCCCEEEeCCCCchhHhhCCeEEEEeCCC
Confidence 99999999999999999999999999888776667776421 111112345899999999999999999999999888
Q ss_pred CceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q psy2427 183 KAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARF 262 (660)
Q Consensus 183 ~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ 262 (660)
+.|.++.++..+|+++|+||+++.++|++++++|++|+|+|++|+|++. .
T Consensus 154 ~~K~~~~~~~~~P~~ai~Dp~l~~~~P~~~~a~tg~Dal~ha~E~y~s~-------------------~----------- 203 (375)
T cd08179 154 GIKYPLADFEITPDVAIVDPELTETMPPKLTAETGMDALTHAIEAYVST-------------------A----------- 203 (375)
T ss_pred CeEEEecCCcccCCEEEEChhhhcCCCHHHHHHHHHHHHHHHHHHHHhc-------------------C-----------
Confidence 8999999999999999999999999999999999999999999999872 2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhH
Q psy2427 263 ALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSA 342 (660)
Q Consensus 263 ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l 342 (660)
T Consensus 204 -------------------------------------------------------------------------------- 203 (375)
T cd08179 204 -------------------------------------------------------------------------------- 203 (375)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccccccccc
Q psy2427 343 PAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTL 422 (660)
Q Consensus 343 ~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~ 422 (660)
T Consensus 204 -------------------------------------------------------------------------------- 203 (375)
T cd08179 204 -------------------------------------------------------------------------------- 203 (375)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q psy2427 423 SLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSH 502 (660)
Q Consensus 423 ~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~ 502 (660)
.+|+++.+|+++++++.++++++++|+ |.++|++
T Consensus 204 ---------------------------------------------~~~~s~~~a~~ai~~i~~~l~~a~~~~-d~~ar~~ 237 (375)
T cd08179 204 ---------------------------------------------ANDFTDPLALHAIEMIFENLPKSYEGD-DKEAREK 237 (375)
T ss_pred ---------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHH
Confidence 234556666667777777777777788 9999999
Q ss_pred HHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCH--HHHHHHHHHh
Q psy2427 503 MHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSP--ERHIEAAELL 580 (660)
Q Consensus 503 ~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~--~~~~~ia~~l 580 (660)
|+||+++||++|+++|+|.+|+|+|+|++.+ +++||+++++++|+|++||.+..+ +++.++++.+
T Consensus 238 l~~as~laG~a~~~~g~g~~Hai~h~lg~~~-------------~i~HG~~~ai~lp~v~~~~~~~~~~~~~~~~i~~~~ 304 (375)
T cd08179 238 MHNAQCMAGMAFSNALLGIVHSMAHKTGAEF-------------GVPHGLANAIYLPYVIQFNSKDAEAKKRYAGLAKEE 304 (375)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhhhhhccCC-------------CCChHHHHHHHHHHHHHHhcccCccHHHHHHHHHHh
Confidence 9999999999999999999999999999874 799999999999999999998875 5777777654
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCc----HHHHHHhhccCCCCCCCCCccCCHHHHHHHHHHH
Q psy2427 581 GADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSAD----IPALVTGTLPQHRITKLAPREQSEEDLANLFENS 656 (660)
Q Consensus 581 g~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~----i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~a 656 (660)
.++.+++++++|++++|+|++|+|+|+++++ ++.+++.++.+.. ..+||+++|++++++||+++
T Consensus 305 -----------~~~~~~~~i~~l~~~lglp~~L~~~gi~~~~~~~~~~~~a~~a~~~~~-~~~~p~~~t~~~i~~il~~~ 372 (375)
T cd08179 305 -----------GVEDLIEAVRELNKKLGIPACFKEYGIDEQEFLEKLDELAENAIKDAC-TGTNPRQPTKEEMKKLLKCV 372 (375)
T ss_pred -----------hHHHHHHHHHHHHHHCCCCCCHHHcCCCHHHHHhhHHHHHHHHHhCcC-CCCCCCCCCHHHHHHHHHHH
Confidence 2345689999999999999999999999865 6899999885434 45799999999999999999
Q ss_pred hh
Q psy2427 657 MS 658 (660)
Q Consensus 657 ~~ 658 (660)
|.
T Consensus 373 ~~ 374 (375)
T cd08179 373 YY 374 (375)
T ss_pred hc
Confidence 84
No 24
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=100.00 E-value=8.2e-63 Score=532.94 Aligned_cols=370 Identities=35% Similarity=0.545 Sum_probs=328.8
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
|++|+||.|++++++++++++|.+|++||+|+++.+.+..+++.+.|++.|+++.+|++++++|+.+.|+++++.+++++
T Consensus 1 P~~i~~G~g~l~~l~~~l~~~~~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 80 (370)
T cd08551 1 PTRIIFGAGAIEKLGEEIKNLGGRKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEG 80 (370)
T ss_pred CCeEEECcCHHHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcC
Confidence 58999999999999999999998999999999987767789999999999999999999999999999999999999999
Q ss_pred CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceee
Q psy2427 108 CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTG 187 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~ 187 (660)
+|+||||||||++|+||++|..+.++ .+.|++... .+...+.+|+|+||||+|||||+|+++++++++.+.|.+
T Consensus 81 ~d~IiaiGGGs~~D~AK~va~~~~~~-~~~~~~~~~-----~~~~~~~~p~i~VPTt~gtgse~t~~avi~d~~~~~K~~ 154 (370)
T cd08551 81 CDGVIAVGGGSVLDTAKAIALLATNP-GDIWDYEGG-----KPVIKPALPLIAIPTTAGTGSEVTPFAVITDEETGEKYG 154 (370)
T ss_pred CCEEEEeCCchHHHHHHHHHHHHhCC-CcHHHHhCc-----ccccCCCCCEEEecCCCcchhhcCCeEEEEECCCCeeEE
Confidence 99999999999999999999988765 567777431 223445699999999999999999999999988789999
Q ss_pred eecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy2427 188 IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267 (660)
Q Consensus 188 ~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~i 267 (660)
+.++..+|+++|+||+++.++|++++++|++|+|+|++|+|++. ..+
T Consensus 155 ~~~~~~~P~~~i~Dp~l~~~~P~~~~~a~~~Dal~h~~E~~~s~-------------------~~~-------------- 201 (370)
T cd08551 155 IASPELLPDVAILDPELTYTLPPALTAATGMDALTHAIEAYVSR-------------------KAN-------------- 201 (370)
T ss_pred EeCCCccCCEEEEChHhhcCCCHHHHHHHHHHHHHHHHHHHHcC-------------------CCC--------------
Confidence 99999999999999999999999999999999999999999872 223
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHH
Q psy2427 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFN 347 (660)
Q Consensus 268 ~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~ 347 (660)
T Consensus 202 -------------------------------------------------------------------------------- 201 (370)
T cd08551 202 -------------------------------------------------------------------------------- 201 (370)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCch
Q psy2427 348 FTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPER 427 (660)
Q Consensus 348 ~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~ 427 (660)
T Consensus 202 -------------------------------------------------------------------------------- 201 (370)
T cd08551 202 -------------------------------------------------------------------------------- 201 (370)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy2427 428 VTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLAS 507 (660)
Q Consensus 428 ~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as 507 (660)
|+++.+|+++++++.+++++++.|+.|.++|++|+||+
T Consensus 202 ------------------------------------------~~s~~~a~~~~~~~~~~l~~~~~~~~~~~ar~~l~~as 239 (370)
T cd08551 202 ------------------------------------------PISDALAIKAIRLIAKNLPKAVKEGGDLEAREKMALAS 239 (370)
T ss_pred ------------------------------------------HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44556666667777777777777788899999999999
Q ss_pred HHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCC
Q psy2427 508 AMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRV 587 (660)
Q Consensus 508 ~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~ 587 (660)
++||++++++|+|++|+|+|.|++.+ +++||+++|+++|++++||.+..++|+.++++.++.. .+.
T Consensus 240 ~laG~a~~~~~~g~~H~i~~~l~~~~-------------~i~HG~~~ai~lp~~l~~~~~~~~~~~~~l~~~~~~~-~~~ 305 (370)
T cd08551 240 TLAGMAFSNAGLGAVHAMAHPLGALY-------------HIPHGLANAILLPHVMRFNAEAIPEKYADIARAMGKV-SGG 305 (370)
T ss_pred HHHHHHHhCcchHHHHHHhhHHhhCC-------------CCcHHHHHHHHHHHHHHhccccCHHHHHHHHHHhCCc-CCC
Confidence 99999999999999999999999864 7999999999999999999999999999999988732 233
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHH
Q psy2427 588 KKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLF 653 (660)
Q Consensus 588 ~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il 653 (660)
+.++.+..+++++++|++++|+|++|+|+|+++++++.+++.++.+.. ..+||+++|++++++||
T Consensus 306 ~~~~~~~~~~~~l~~~~~~lglp~~L~e~gi~~~~~~~ia~~a~~~~~-~~~~p~~~~~~~i~~il 370 (370)
T cd08551 306 SDDEAANAAIAAIRKLNKELGIPTSLADLGVKEEDIDKLAELAMEDAC-LLNNPRIITREDIREIY 370 (370)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhccc-CCCCCCCCCHHHHHHhC
Confidence 455667788999999999999999999999999999999999986544 34689999999999986
No 25
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=100.00 E-value=4.7e-63 Score=530.85 Aligned_cols=353 Identities=27% Similarity=0.471 Sum_probs=307.8
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccc-cccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHL-SKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV 106 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~-~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~ 106 (660)
|++|+||.|++++++++++++| +|++||+|+.+ .+.+.++++.+.|++.|+++.+|++++++|+.+.|+++++.++++
T Consensus 4 p~~i~~G~g~l~~l~~~~~~~g-~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~ 82 (357)
T cd08181 4 PTKVYFGENCVEKHGEELAALG-KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKF 82 (357)
T ss_pred CCeEEECCCHHHHHHHHHHHcC-CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhc
Confidence 5899999999999999999998 99999999987 446777999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCcee
Q psy2427 107 QCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKT 186 (660)
Q Consensus 107 ~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~ 186 (660)
++|+||||||||++|+||+++..+.++ .+.+|++. .....+.+|+|+||||+|||||+|+++|+++++.+.|.
T Consensus 83 ~~D~IIavGGGSviD~aK~ia~~~~~~-~~~~~~~~------~~~~~~~~P~i~VPTtagTGsE~t~~avi~d~~~~~K~ 155 (357)
T cd08181 83 NADFVIGIGGGSPLDAAKAIAVLIKNP-DLKVELYF------RSKYLKALPVVAIPTTAGTGSEVTQYSVLTDHEEGTKK 155 (357)
T ss_pred CCCEEEEeCCchHHHHHHHHHHHHhCC-CcHHHHhc------ccccCCCCCEEEEeCCCcchhhhCCeEEEEECCCCeee
Confidence 999999999999999999999988776 56777642 12234559999999999999999999999998889999
Q ss_pred eeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy2427 187 GIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQT 266 (660)
Q Consensus 187 ~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~ 266 (660)
++.++.++|+++|+||+++.++|++++++|++|+|+|++|+|++ ...|
T Consensus 156 ~i~~~~~~P~~~i~Dp~l~~~~P~~~~a~~g~Dal~ha~E~~~s-------------------~~~~------------- 203 (357)
T cd08181 156 GFGHDLIFPKLAFLDPKYTLTLPKEVTINTALDALSHAVEGYLS-------------------NKST------------- 203 (357)
T ss_pred eccCCccccCEEEEChHHhcCCCHHHHHHHHHHHHHHHHHHHHc-------------------CCCC-------------
Confidence 99999999999999999999999999999999999999999987 2334
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHH
Q psy2427 267 IRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVF 346 (660)
Q Consensus 267 i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l 346 (660)
T Consensus 204 -------------------------------------------------------------------------------- 203 (357)
T cd08181 204 -------------------------------------------------------------------------------- 203 (357)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCc
Q psy2427 347 NFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPE 426 (660)
Q Consensus 347 ~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~ 426 (660)
T Consensus 204 -------------------------------------------------------------------------------- 203 (357)
T cd08181 204 -------------------------------------------------------------------------------- 203 (357)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy2427 427 RVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLA 506 (660)
Q Consensus 427 ~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~a 506 (660)
|++|.+|+++++++.++++++++|+.|.++|++|+||
T Consensus 204 -------------------------------------------~~~d~~a~~ai~l~~~~l~~~~~~~~~~~ar~~~~~a 240 (357)
T cd08181 204 -------------------------------------------PYSDMLAKEALELFKECLPKLLENELDEEAREKLMLA 240 (357)
T ss_pred -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4455555555666666666666677889999999999
Q ss_pred HHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCC
Q psy2427 507 SAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSR 586 (660)
Q Consensus 507 s~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~ 586 (660)
+++||++|+++|++.+|+|+|+||++| +++||+++++++|+||+||.+..++|| ++++.+|.+
T Consensus 241 s~laG~a~~~~g~~~~Hal~~~l~~~~-------------~~~HG~~~ai~lp~vl~~~~~~~~~~~-~~~~~~g~~--- 303 (357)
T cd08181 241 STLAGMVIAQTGTTLPHGLGYPLTYEK-------------GIPHGLANGIFLPEYLELAKEQIPEKV-FILKLLGFG--- 303 (357)
T ss_pred HHHHHHHHhcccchhhHhhcCccccCC-------------CCCcHHHHHHHHHHHHHHHhhcCHHHH-HHHHHcCcH---
Confidence 999999999999999999999999864 799999999999999999999999999 999999852
Q ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHH
Q psy2427 587 VKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFE 654 (660)
Q Consensus 587 ~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~ 654 (660)
.+++|+++++.|.+|.+ |+++++++.+++.++.+. ...+||+++|+|++++||+
T Consensus 304 ------------~~~~~~~~~~~~~~l~~-gv~~~~~~~~a~~~~~~~-~~~~nP~~~t~~~i~~il~ 357 (357)
T cd08181 304 ------------SLDEFLKSLGLLLKVVI-KLSDEEIEKWAERALSAK-HKANTPGEVTEEDIRNIYK 357 (357)
T ss_pred ------------HHHHHHHHHhHHhCCCC-CCCHHHHHHHHHHHHhCc-CcCCCCCCCCHHHHHHHhC
Confidence 23345555555555555 999999999999998543 3467999999999999985
No 26
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=100.00 E-value=2.3e-62 Score=524.77 Aligned_cols=348 Identities=27% Similarity=0.345 Sum_probs=305.0
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
|++|+||.|+++++++++. .+|++||+|+.+.+.+..+++.+.|++. .+.+|+++++||+.++|+++++.+++++
T Consensus 4 p~~I~~G~g~~~~l~~~~~---~~r~lvVtd~~~~~~g~~~~v~~~L~~~--~~~~~~~v~~~pt~~~v~~~~~~~~~~~ 78 (355)
T TIGR03405 4 PVRIHFGAGSLALAPQLLH---GRRVVVVTFPEARALGLARRLEALLGGR--LAALIDDVAPNPDVAQLDGLYARLWGDE 78 (355)
T ss_pred CCeEEECCCHHHHHHHHhC---CCeEEEEECcchhhcchHHHHHHHhccC--cEEEeCCCCCCcCHHHHHHHHHHHHhcC
Confidence 5899999999999999763 3899999999988888889999999753 5778999999999999999999999988
Q ss_pred --CCEEEEecCchhhhHHHHHHhHhcCCC-cchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCc
Q psy2427 108 --CDAFIAVGGGSVIDTCKAANLYYCDPE-AEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKA 184 (660)
Q Consensus 108 --~D~IIavGGGsviD~AK~~a~~~~~~~-~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~ 184 (660)
+|+||||||||++|+||+++..+.+++ .++|||+.. + ..+...+.+|+|+||||+|||||+|+++|+++++.+.
T Consensus 79 ~~~D~IIaiGGGSviD~aK~ia~~~~~~~~~~~~~~~~~--~-~~~~~~~~~P~IaVPTTagTGSE~t~~avi~d~~~~~ 155 (355)
T TIGR03405 79 GACDLVIALGGGSVIDTAKVLAVGLRRGEFDLLLQLLRN--G-RDFAPTARLPLVAIPTTAGTGSEVTPWATVWDAENSK 155 (355)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHhCCCcccHHHHHhc--C-CccCCCCCCCEEEEcCCCcchhhhcCeEEEEeCCCCe
Confidence 999999999999999999999887654 467888632 1 1123445699999999999999999999999998899
Q ss_pred eeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q psy2427 185 KTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFAL 264 (660)
Q Consensus 185 K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai 264 (660)
|.++.++.++|+++|+||+++.++|++++++|++|+|+|++|+|++. ..+
T Consensus 156 K~~~~~~~~~P~~ailDp~l~~t~P~~~~a~tg~Dal~haiE~~~s~-------------------~~~----------- 205 (355)
T TIGR03405 156 KYSLHLPFTYPEAAIVDAALMLSLPREHTLSTGLDALSHALESIWNV-------------------NAN----------- 205 (355)
T ss_pred eEEeccCCccCCEEEEChHHHcCCCHHHHHHHHHHHHHHHHHHHHcC-------------------CCC-----------
Confidence 99999999999999999999999999999999999999999999872 233
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHH
Q psy2427 265 QTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPA 344 (660)
Q Consensus 265 ~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~ 344 (660)
T Consensus 206 -------------------------------------------------------------------------------- 205 (355)
T TIGR03405 206 -------------------------------------------------------------------------------- 205 (355)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCC
Q psy2427 345 VFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSL 424 (660)
Q Consensus 345 ~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~ 424 (660)
T Consensus 206 -------------------------------------------------------------------------------- 205 (355)
T TIGR03405 206 -------------------------------------------------------------------------------- 205 (355)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy2427 425 PERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMH 504 (660)
Q Consensus 425 P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~ 504 (660)
|++|.+|+++++++.++++++++|++|+++|++|+
T Consensus 206 ---------------------------------------------p~sd~~a~~a~~li~~~L~~~~~~~~d~~aR~~~~ 240 (355)
T TIGR03405 206 ---------------------------------------------PVSRGLAIQAAADISRALPEVLAQPGDLALRSDMA 240 (355)
T ss_pred ---------------------------------------------HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45555566666666666666667788899999999
Q ss_pred HHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCC
Q psy2427 505 LASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADV 584 (660)
Q Consensus 505 ~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~ 584 (660)
|||++||++|+++|++++|+|+|+|++.+ +++||+++++++|+||+||.+..++|++++++++|..
T Consensus 241 ~as~laG~a~~~~~~g~~Hal~~~l~~~~-------------~i~HG~~~aillp~vl~~n~~~~~~~~~~~~~~~g~~- 306 (355)
T TIGR03405 241 LAALKAGLAFSNTKTALAHSISYEMTLRH-------------GVPHGIACSFTLPTVLRTALGRNPSRDALLQAVFGDT- 306 (355)
T ss_pred HHHHHHHHHHhchhHHHHHHhhchhccCC-------------CCCcHHHHHHHHHHHHHHhhccCHHHHHHHHHHhCcH-
Confidence 99999999999999999999999999863 7999999999999999999999999999999999831
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCc
Q psy2427 585 SRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPR 642 (660)
Q Consensus 585 ~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~ 642 (660)
..+++++++|++++|+|++|+|+|+++++++++++.++.+.+ .+|+|+
T Consensus 307 ---------~~~~~~i~~l~~~lglP~~L~~~gv~~~~~~~~a~~a~~~~~-~~~~~~ 354 (355)
T TIGR03405 307 ---------ASAPARLRAFLDTLGVKTRFADYGVSRDEARRMVGEAFDGAR-GKNFIG 354 (355)
T ss_pred ---------HHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHHhHH-hhcCCC
Confidence 246899999999999999999999999999999999986544 578886
No 27
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=100.00 E-value=8.5e-62 Score=483.30 Aligned_cols=379 Identities=21% Similarity=0.301 Sum_probs=337.4
Q ss_pred CCceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECcc-ccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHH
Q psy2427 19 DKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPH-LSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFL 97 (660)
Q Consensus 19 ~~~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~-~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~ 97 (660)
|..|.|..| ++|+||+|.+.+|++++.+. +|+||+++.+ +++.+.++++.+.|+ |+++..|.+++|||+++++.
T Consensus 1 M~nF~y~nP-Tki~FGkg~i~~l~~ei~~~--~kVLi~YGGGSIKrnGvydqV~~~Lk--g~~~~E~~GVEPNP~~~Tv~ 75 (384)
T COG1979 1 MNNFTYHNP-TKILFGKGQIAELREEIPKD--AKVLIVYGGGSIKKNGVYDQVVEALK--GIEVIEFGGVEPNPRLETLM 75 (384)
T ss_pred CCCccccCC-ceEEecCchHHHHHhhcccc--CeEEEEecCccccccchHHHHHHHhc--CceEEEecCCCCCchHHHHH
Confidence 567778875 99999999999999999987 7999999875 778889999999998 89999999999999999999
Q ss_pred HHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEE
Q psy2427 98 EATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIF 177 (660)
Q Consensus 98 ~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi 177 (660)
++++.+|++++|+|+|||||||+|.+|++|+-... ++|.||.+.... .....+|+.+|-|.++||||++..+|+
T Consensus 76 kaV~i~kee~idflLAVGGGSViD~tK~IAa~a~y-~GD~Wdi~~~~~-----~i~~alP~g~VLTLpATGSEmn~~aVI 149 (384)
T COG1979 76 KAVEICKEENIDFLLAVGGGSVIDGTKFIAAAAKY-DGDPWDILTKKH-----KIKDALPIGTVLTLPATGSEMNAGAVI 149 (384)
T ss_pred HHHHHHHHcCceEEEEecCcchhhhHHHHHhhccc-CCChHHHHhcCC-----ccccccccceEEEccccccccCCCcee
Confidence 99999999999999999999999999999876644 368999985321 244559999999999999999999999
Q ss_pred eeCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q psy2427 178 DYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSD 257 (660)
Q Consensus 178 ~~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~ 257 (660)
++.+++.|.++.++..+|.++|+||+++.|+|+|+++.|..|+++|-+|.|++.+
T Consensus 150 t~~~t~eK~~~~S~~v~PkFsvLDP~~tyTlP~~Q~a~G~vDa~sHv~EqYft~~------------------------- 204 (384)
T COG1979 150 TNEETKEKLGFGSPLVFPKFSVLDPEVTYTLPKRQTANGVVDAFSHVFEQYFTYP------------------------- 204 (384)
T ss_pred cccccccceeccCcccccceEEeCCcceeecChHHhhhhHHHHHHHHHHHHhcCc-------------------------
Confidence 9999999999999999999999999999999999999999999999999998620
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhH
Q psy2427 258 VWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLS 337 (660)
Q Consensus 258 ~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~a 337 (660)
T Consensus 205 -------------------------------------------------------------------------------- 204 (384)
T COG1979 205 -------------------------------------------------------------------------------- 204 (384)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccc
Q psy2427 338 VVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLID 417 (660)
Q Consensus 338 vai~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d 417 (660)
T Consensus 205 -------------------------------------------------------------------------------- 204 (384)
T COG1979 205 -------------------------------------------------------------------------------- 204 (384)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCH
Q psy2427 418 PLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDL 497 (660)
Q Consensus 418 ~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~ 497 (660)
...+++|++|+..++++.+..|++++||+|+
T Consensus 205 -------------------------------------------------~~a~lQDr~aE~~l~TlIe~gpk~l~~p~nY 235 (384)
T COG1979 205 -------------------------------------------------VNAKLQDRFAEGILRTLIEYGPKLLEDPENY 235 (384)
T ss_pred -------------------------------------------------CCchhhHHHHHHHHHHHHHHhHHHhcCCccH
Confidence 2235678899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhhhccc---chhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHH
Q psy2427 498 EARSHMHLASAMAGVGFGNAG---VHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHI 574 (660)
Q Consensus 498 ~ar~~~~~as~~ag~~~~~~g---~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~ 574 (660)
++|++++|++++|.+++-.+| .|.+|.|+|.||++| +++||.++||++|.||+|..+..+.||.
T Consensus 236 ~~RanlmWaaT~AlNGli~~G~~~DWAtH~i~HelsA~y-------------~i~Ha~~LAIv~P~~m~~~~~~k~~k~~ 302 (384)
T COG1979 236 EARANLMWAATMALNGLIGAGVPQDWATHMIGHELTALY-------------DIDHAQGLAIVLPAWMNYTLDQKRAKLL 302 (384)
T ss_pred HHHHHHHHHHHHHhhchhhcCCCCchhhhhhcchhhhhc-------------CCccccceeEechHHHHHHHhhcHHHHH
Confidence 999999999999998765544 799999999999984 7999999999999999999999999999
Q ss_pred HHH-HHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHH
Q psy2427 575 EAA-ELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLF 653 (660)
Q Consensus 575 ~ia-~~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il 653 (660)
+.+ ++||++.. ++++.+.+.|+++++|++++|+|++|+|+|+++++++.+.++........-.+-+.++.+|+++||
T Consensus 303 q~a~rV~gi~~g--~~~e~i~~~I~ktr~ff~slGv~trlsdygi~~e~~~~~~~~l~~~~~~~lG~~~~l~~~dv~~Il 380 (384)
T COG1979 303 QYAERVWGITEG--SDDEIIDEAIAKTREFFESLGVPTRLSDYGIDEEKIPLLLEKLEKHGMGTLGEFGDLNLQDVREIL 380 (384)
T ss_pred HHHHHHcCCCCC--ChHHHHHHHHHHHHHHHHHcCCccchhhcCCChhhhHHHHHHHHhcccccccccccccHHHHHHHH
Confidence 999 59999865 578899999999999999999999999999999998888776433322223466899999999999
Q ss_pred HHHh
Q psy2427 654 ENSM 657 (660)
Q Consensus 654 ~~a~ 657 (660)
+.|+
T Consensus 381 ~~a~ 384 (384)
T COG1979 381 EAAL 384 (384)
T ss_pred HhcC
Confidence 9874
No 28
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=100.00 E-value=3.2e-62 Score=520.74 Aligned_cols=337 Identities=27% Similarity=0.375 Sum_probs=304.0
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
|++|+||.|++++++++++++|.+|++||||+++++. ..+++.+.|++.+ +.+|++++++|+.+.|+++++.+++.+
T Consensus 1 p~~i~~G~g~l~~l~~~l~~~g~~~~livt~~~~~~~-~~~~v~~~l~~~~--~~~~~~~~~~p~~~~v~~~~~~~~~~~ 77 (337)
T cd08177 1 PQRVVFGPGALAALAAELERLGASRALVLTTPSLATK-LAERVASALGDRV--AGTFDGAVMHTPVEVTEAAVAAAREAG 77 (337)
T ss_pred CCeEEECCCHHHHHHHHHHHcCCCeEEEEcChHHHHH-HHHHHHHHhccCC--cEEeCCCCCCCCHHHHHHHHHHHHhcC
Confidence 5799999999999999999999999999999998887 7899999998764 467899999999999999999999999
Q ss_pred CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceee
Q psy2427 108 CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTG 187 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~ 187 (660)
+|+||||||||++|+||+++..+. +|+|+||||+ ||||+|++++++++ +.|.+
T Consensus 78 ~d~IIaiGGGs~iD~aK~ia~~~~------------------------~p~i~IPTta-tgse~t~~avit~~--g~K~~ 130 (337)
T cd08177 78 ADGIVAIGGGSTIDLAKAIALRTG------------------------LPIIAIPTTL-SGSEMTPIAGVTEN--GVKTT 130 (337)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHhc------------------------CCEEEEcCCc-hhhhhcCeEEEecC--CceeE
Confidence 999999999999999999998763 8999999999 99999999999875 78999
Q ss_pred eecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy2427 188 IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267 (660)
Q Consensus 188 ~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~i 267 (660)
+.++..+|+.+|+||+++.++|+++++++++|+|+|++|+|++. ..
T Consensus 131 i~~~~~~P~~~i~Dp~l~~~~P~~~~~~~g~Dal~h~iE~~~s~-------------------~~--------------- 176 (337)
T cd08177 131 GRDPEVLPRTVIYDPELTLTTPRRLWLSSGIRAIDHAVEALYAP-------------------DA--------------- 176 (337)
T ss_pred eeCccccCCEEEEChHHhcCCCHHHHHHHHHHHHHHHHHHHHcC-------------------CC---------------
Confidence 99999999999999999999999999999999999999999872 23
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHH
Q psy2427 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFN 347 (660)
Q Consensus 268 ~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~ 347 (660)
T Consensus 177 -------------------------------------------------------------------------------- 176 (337)
T cd08177 177 -------------------------------------------------------------------------------- 176 (337)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCch
Q psy2427 348 FTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPER 427 (660)
Q Consensus 348 ~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~ 427 (660)
T Consensus 177 -------------------------------------------------------------------------------- 176 (337)
T cd08177 177 -------------------------------------------------------------------------------- 176 (337)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy2427 428 VTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLAS 507 (660)
Q Consensus 428 ~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as 507 (660)
||+++.+|+++++++.++++++++|+.|+++|++|+|||
T Consensus 177 -----------------------------------------~~~s~~~a~~ai~~i~~~l~~~~~~~~~~~ar~~~~~as 215 (337)
T cd08177 177 -----------------------------------------NPIVDLLAEEGIRALAEALPRIKADPDDLDARLDALYGA 215 (337)
T ss_pred -----------------------------------------ChHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345556666666666666666667788899999999999
Q ss_pred HHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCC
Q psy2427 508 AMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRV 587 (660)
Q Consensus 508 ~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~ 587 (660)
++||++++++|+|++|+|+|+|++.| ++|||+++++++|+||+||.+..++|++++++.+|.+
T Consensus 216 ~~ag~a~~~~~~g~~H~l~h~l~~~~-------------~~~HG~~~ai~lp~vl~~~~~~~~~~~~~~a~~l~~~---- 278 (337)
T cd08177 216 WLCGTCLGSVGMGLSHKLGHVLGGTF-------------GLPHAETSCIVLPHVLAFNAPAAPEALARLARALGLG---- 278 (337)
T ss_pred HHHHHHhccccHHHHHHhhCccccCc-------------CCCcHHHHHHHHHHHHHhcCcCCHHHHHHHHHHhCcc----
Confidence 99999999999999999999999975 7999999999999999999999999999999999753
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHH
Q psy2427 588 KKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFE 654 (660)
Q Consensus 588 ~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~ 654 (660)
+..+++++++|++++|+|++|+|+|+++++++.+++.++.+ . ..||+++|++|+++||+
T Consensus 279 -----~~~~~~~i~~l~~~lglp~~l~e~gi~~~~~~~~~~~a~~~-~--~~~p~~~t~~~i~~i~~ 337 (337)
T cd08177 279 -----AADAADALADLARSLGAPTSLADLGVPRDDIDRAAELALAD-P--YANPRPLERDAVRALLE 337 (337)
T ss_pred -----HHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhc-c--ccCCCCCCHHHHHHHhC
Confidence 23458999999999999999999999999999999999854 2 24699999999999985
No 29
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-60 Score=563.07 Aligned_cols=380 Identities=28% Similarity=0.440 Sum_probs=331.1
Q ss_pred EEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHH--hCCCeEEEEeCcccCCCHHHHHHHHH
Q psy2427 24 FEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLT--RHGVKFELFDKVRVEPTGDSFLEATK 101 (660)
Q Consensus 24 ~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~--~~gi~~~~~~~~~~~p~~~~v~~~~~ 101 (660)
|.+ |++|+||.|+++++++++. +.+|+|||+|+++.+.++.+++.+.|+ +.++++.+|+++++||+.+.|+++++
T Consensus 457 ~~~-P~~i~~G~g~l~~l~~~l~--~~~~~lvVtd~~~~~~g~~~~v~~~L~~~~~~i~~~~~~~v~~np~~~~v~~~~~ 533 (862)
T PRK13805 457 FKV-PKKIYFERGSLPYLLDELD--GKKRAFIVTDRFMVELGYVDKVTDVLKKRENGVEYEVFSEVEPDPTLSTVRKGAE 533 (862)
T ss_pred eec-CCeEEECCCHHHHHHHHhc--CCCEEEEEECcchhhcchHHHHHHHHhcccCCCeEEEeCCCCCCcCHHHHHHHHH
Confidence 454 5899999999999999885 569999999999888878899999999 78999999999999999999999999
Q ss_pred HhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCC-----CCCCCCcEEEEcCCCCcCccccCceE
Q psy2427 102 FVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKP-----VTVPLKPLIAIPTTSGTGSETTGVSI 176 (660)
Q Consensus 102 ~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~-----~~~~~lP~i~IPTt~gtgse~s~~av 176 (660)
.+++.++|+||||||||++|+||+++..+.+++.+++|+.....+.++. ...+.+|+|+||||+|||||+|+++|
T Consensus 534 ~~~~~~~D~IIaiGGGSviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTTagTGSE~t~~av 613 (862)
T PRK13805 534 LMRSFKPDTIIALGGGSPMDAAKIMWLFYEHPETDFEDLAQKFMDIRKRIYKFPKLGKKAKLVAIPTTSGTGSEVTPFAV 613 (862)
T ss_pred HHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCCHHHHHHHhcccccccccccccCCCCcEEEeeCCCCcccccCCeEE
Confidence 9999999999999999999999999999888777777764211111111 11356899999999999999999999
Q ss_pred EeeCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHH
Q psy2427 177 FDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVS 256 (660)
Q Consensus 177 i~~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s 256 (660)
+++.+++.|..+.++.++|+++|+||+++.++|++++++|++|+|+|++|+|++. ..
T Consensus 614 i~~~~~~~K~~~~~~~~~P~~~ivDp~l~~tlP~~~taa~g~Dal~ha~Eay~s~-------------------~~---- 670 (862)
T PRK13805 614 ITDDKTGVKYPLADYELTPDVAIVDPNLVMTMPKSLTADTGIDALTHALEAYVSV-------------------MA---- 670 (862)
T ss_pred EEecCCCeEEEeeCCCccCCEEEECHHHHccCCHHHHHHHHHHHHHHHHHHHHcc-------------------CC----
Confidence 9998888999999999999999999999999999999999999999999999872 23
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchh
Q psy2427 257 DVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGL 336 (660)
Q Consensus 257 ~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~ 336 (660)
T Consensus 671 -------------------------------------------------------------------------------- 670 (862)
T PRK13805 671 -------------------------------------------------------------------------------- 670 (862)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccc
Q psy2427 337 SVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLI 416 (660)
Q Consensus 337 avai~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~ 416 (660)
T Consensus 671 -------------------------------------------------------------------------------- 670 (862)
T PRK13805 671 -------------------------------------------------------------------------------- 670 (862)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCC-C
Q psy2427 417 DPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQ-D 495 (660)
Q Consensus 417 d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~-~ 495 (660)
+|+++.+|+++++++.++++++++|+ .
T Consensus 671 ----------------------------------------------------~~~sd~~a~~ai~li~~~L~~a~~~~~~ 698 (862)
T PRK13805 671 ----------------------------------------------------SDYTDGLALQAIKLVFEYLPRSYKNGAK 698 (862)
T ss_pred ----------------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34555666666666666666667777 8
Q ss_pred CHHHHHHHHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccC-------
Q psy2427 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAAS------- 568 (660)
Q Consensus 496 ~~~ar~~~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~------- 568 (660)
|+++|++|+||+++||++++|+|++++|+|+|+|++.| +++||+++++++|+||+||.+.
T Consensus 699 d~~ar~~m~~As~laG~a~~~~~~g~~Hal~~~lg~~~-------------~v~HG~~~aillP~vl~~n~~~~~~~~~~ 765 (862)
T PRK13805 699 DPEAREKMHNASTIAGMAFANAFLGICHSMAHKLGAEF-------------HIPHGRANAILLPHVIRYNATDPPKQAAF 765 (862)
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhhcCc-------------CCChHHHHHHHHHHHHHHhhhcccccccc
Confidence 89999999999999999999999999999999999874 7999999999999999999884
Q ss_pred -------CHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCc----HHHHHHhhccCCCCC
Q psy2427 569 -------SPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSAD----IPALVTGTLPQHRIT 637 (660)
Q Consensus 569 -------~~~~~~~ia~~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~----i~~ia~~a~~~~~~~ 637 (660)
.++||++++++||.. +.++++.+..+++++++|++++|+|++|+|+|+++++ ++.+++.++.+. ..
T Consensus 766 ~~~~~~~~~~k~~~la~~l~~~--~~~~~~~a~~~i~~i~~l~~~lglP~~L~~~gv~~~~~~~~l~~~a~~a~~~~-~~ 842 (862)
T PRK13805 766 PQYEYPRADERYAEIARHLGLP--GSTTEEKVESLIKAIEELKAELGIPMSIKEAGVDEADFLAKLDELAELAFDDQ-CT 842 (862)
T ss_pred ccccccccHHHHHHHHHHhCCC--CCChHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHhhHHHHHHHHHhCc-cc
Confidence 579999999999873 3345677788899999999999999999999999876 699999998553 44
Q ss_pred CCCCccCCHHHHHHHHHHHh
Q psy2427 638 KLAPREQSEEDLANLFENSM 657 (660)
Q Consensus 638 ~~~P~~~t~e~i~~il~~a~ 657 (660)
.+||++++++|+++||+++|
T Consensus 843 ~~np~~~~~~~i~~i~~~~~ 862 (862)
T PRK13805 843 GANPRYPLISELKEILLDAY 862 (862)
T ss_pred cCCCCCCCHHHHHHHHHHhC
Confidence 57999999999999999886
No 30
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=100.00 E-value=2.3e-58 Score=490.50 Aligned_cols=325 Identities=32% Similarity=0.499 Sum_probs=287.1
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
|++|+||.|+++++.+ ++.+|++||+|+++.+.++.+++.+.|++. +++.+|+++++||+.+.|+++++.+++++
T Consensus 4 p~~i~~G~g~~~~l~~----~~~~~~lvv~~~~~~~~g~~~~v~~~l~~~-~~~~~~~~v~~~p~~~~v~~~~~~~~~~~ 78 (332)
T cd08180 4 KTKIYFGEDALERLKE----LKNKRVLIVTDPFMVKSGMLDKVTDHLDSS-IEVEIFSDVVPDPPIEVVAKGIKKFLDFK 78 (332)
T ss_pred CCeEEECcCHHHHHHH----hCCCeEEEEeCchhhhCccHHHHHHHHHhc-CcEEEeCCCCCCcCHHHHHHHHHHHHhcC
Confidence 5899999999998744 334899999999998887889999999987 88889999999999999999999999999
Q ss_pred CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceee
Q psy2427 108 CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTG 187 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~ 187 (660)
+|+||||||||++|+||+++....+. ...+.+|+|+||||+|||||+|+++|+++++++.|.+
T Consensus 79 ~d~IiaiGGGs~~D~aKa~a~~~~~~-----------------~~~~~~p~i~VPTtagtgse~t~~avi~~~~~~~k~~ 141 (332)
T cd08180 79 PDIVIALGGGSAIDAAKAIIYFAKKL-----------------GKKKKPLFIAIPTTSGTGSEVTSFAVITDPETGVKYP 141 (332)
T ss_pred CCEEEEECCchHHHHHHHHHHHHhCC-----------------CCCCCCCEEEeCCCCcchHhhCCeEEEEecCCCeeEE
Confidence 99999999999999999998876532 1223489999999999999999999999988889999
Q ss_pred eecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy2427 188 IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267 (660)
Q Consensus 188 ~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~i 267 (660)
+.++..+|+.+|+||+++.++|++++++|++|+|+|++|+|++. ..
T Consensus 142 ~~~~~~~p~~~i~Dp~l~~~~P~~~~~~~~~Dal~h~~E~~~s~-------------------~~--------------- 187 (332)
T cd08180 142 LVDDELLPDIAILDPELVKTVPPAVTADTGMDVLTHALEAYVST-------------------DA--------------- 187 (332)
T ss_pred eeCCCccCCEEEECchhhccCCHHHHHHhHHHHHHHHHHHHHcC-------------------CC---------------
Confidence 99999999999999999999999999999999999999999872 23
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHH
Q psy2427 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFN 347 (660)
Q Consensus 268 ~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~ 347 (660)
T Consensus 188 -------------------------------------------------------------------------------- 187 (332)
T cd08180 188 -------------------------------------------------------------------------------- 187 (332)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCch
Q psy2427 348 FTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPER 427 (660)
Q Consensus 348 ~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~ 427 (660)
T Consensus 188 -------------------------------------------------------------------------------- 187 (332)
T cd08180 188 -------------------------------------------------------------------------------- 187 (332)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy2427 428 VTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLAS 507 (660)
Q Consensus 428 ~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as 507 (660)
+|+++.+|+++++++.++++++++|+.|.++|++|+||+
T Consensus 188 -----------------------------------------~~~s~~~a~~a~~~l~~~l~~a~~~~~~~~ar~~l~~as 226 (332)
T cd08180 188 -----------------------------------------NDFTDALAEKAIKLVFEYLPKAYKDGDDLEAREKMHNAS 226 (332)
T ss_pred -----------------------------------------CHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 345556666666666677777777788899999999999
Q ss_pred HHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCC
Q psy2427 508 AMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRV 587 (660)
Q Consensus 508 ~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~ 587 (660)
++||++++++|++++|+|+|.|++.+ +++||+++++++|++++|
T Consensus 227 ~laG~a~~~~g~g~~Hal~~~l~~~~-------------~i~HG~~~ai~lp~~l~~----------------------- 270 (332)
T cd08180 227 CMAGMAFNNAGLGINHSLAHALGGKF-------------HIPHGRANAILLPYVIEF----------------------- 270 (332)
T ss_pred HHHHHHHhCccchhhhhhhhhhhcCC-------------CCChHHHHHHHHHHHHHH-----------------------
Confidence 99999999999999999999999874 799999999999999998
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCc----HHHHHHhhccCCCCCCCCCccCCHHHHHHHHH
Q psy2427 588 KKADAGKLLADTVRGYMDQMKIENGLKVLGYTSAD----IPALVTGTLPQHRITKLAPREQSEEDLANLFE 654 (660)
Q Consensus 588 ~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~----i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~ 654 (660)
+++++++|++++|+|++|+|+|+++++ ++.+++.++.+ +...+||+++|+|++++||+
T Consensus 271 --------~~~~i~~l~~~lglp~~L~~~gi~~~~~~~~~~~~a~~a~~~-~~~~~~p~~~t~~~i~~i~~ 332 (332)
T cd08180 271 --------LIEAIKQLKKKLNIPETLKELGVDKEEFEAAIDEMAENALKD-ACTPTNPRKPTKEDLKEILE 332 (332)
T ss_pred --------HHHHHHHHHHHcCCCCCHHHcCCCHHHHHhHHHHHHHHHHhC-cCcCCCCCCCCHHHHHHHhC
Confidence 267899999999999999999999875 78999998754 34467999999999999984
No 31
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=100.00 E-value=6.2e-57 Score=480.64 Aligned_cols=329 Identities=29% Similarity=0.419 Sum_probs=292.4
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
|++|+||.|++++++++++++|.+|++||+|+++.+ +..+++.+.|++. +++.+|..+++||+.++|+++++.+++.+
T Consensus 1 p~~i~~G~g~l~~l~~~~~~~g~~~~liv~~~~~~~-~~~~~v~~~l~~~-~~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 78 (332)
T cd07766 1 PTRIVFGEGAIEKIGEEIKRGGFDRALVVSDEGVVK-GVGEKVADSLKKL-IAVHIFDGVGPNPTFEEVKEAVERARAAE 78 (332)
T ss_pred CCeEEECcCHHHHHHHHHHhcCCCeEEEEeCCchhh-hHHHHHHHHHHhc-CcEEEeCCcCCCcCHHHHHHHHHHHHhcC
Confidence 579999999999999999999889999999999887 6889999999988 89999999999999999999999999999
Q ss_pred CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceee
Q psy2427 108 CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTG 187 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~ 187 (660)
+|+||||||||++|+||++|..+.++ +|+|+||||+|||||+|+++++++++ +.|.+
T Consensus 79 ~d~IIaiGGGs~~D~aK~ia~~~~~~----------------------~p~i~iPTt~~tgse~t~~avi~~~~-~~K~~ 135 (332)
T cd07766 79 VDAVIAVGGGSTLDTAKAVAALLNRG----------------------LPIIIVPTTAATGSEVSPKAVITDKE-GGKTG 135 (332)
T ss_pred cCEEEEeCCchHHHHHHHHHHHhcCC----------------------CCEEEEeCCCchhhccCCeEEEEeCC-CceEE
Confidence 99999999999999999999988643 89999999999999999999999887 88999
Q ss_pred eecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy2427 188 IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267 (660)
Q Consensus 188 ~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~i 267 (660)
+.++ ++|+++|+||+++.++|++++++|++|+|+|++|+|++. ..++
T Consensus 136 ~~~~-~~P~~vi~Dp~l~~t~P~~~~~~g~~Dal~h~~E~~~~~-------------------~~~~------------- 182 (332)
T cd07766 136 FFYP-DNPDVVFVDTDITKGLPPRQVASGGVDALSHALEAYSTK-------------------KSWP------------- 182 (332)
T ss_pred eccC-CccCEEEEChhhhhCCCHHHHHHHHHHHHHHHHHHHHCC-------------------CCCh-------------
Confidence 9998 899999999999999999999999999999999999872 2334
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHH
Q psy2427 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFN 347 (660)
Q Consensus 268 ~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~ 347 (660)
T Consensus 183 -------------------------------------------------------------------------------- 182 (332)
T cd07766 183 -------------------------------------------------------------------------------- 182 (332)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCch
Q psy2427 348 FTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPER 427 (660)
Q Consensus 348 ~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~ 427 (660)
T Consensus 183 -------------------------------------------------------------------------------- 182 (332)
T cd07766 183 -------------------------------------------------------------------------------- 182 (332)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy2427 428 VTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLAS 507 (660)
Q Consensus 428 ~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as 507 (660)
+++.+|+++++++.++++++++ +.|.++|++|++++
T Consensus 183 -------------------------------------------~~~~~a~~~~~~l~~~l~~~~~-~~~~~ar~~l~~as 218 (332)
T cd07766 183 -------------------------------------------IADALAEKALETIEEDLPKAIE-PGDYDALEKVVWAA 218 (332)
T ss_pred -------------------------------------------HHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 4455555555555566666655 67888999999999
Q ss_pred HHHhHhhhc---ccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCC
Q psy2427 508 AMAGVGFGN---AGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADV 584 (660)
Q Consensus 508 ~~ag~~~~~---~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~ 584 (660)
+++|+++.+ ++++++|+|+|.|+..+ +++||+++++++|++++|+.+..++
T Consensus 219 ~~ag~~~~~~~~~~~~~~H~i~h~l~~~~-------------~i~HG~ava~~l~~~~~~~~~~~~~------------- 272 (332)
T cd07766 219 TLAGNGLFAAKSGGLGAAHAIGHALTALE-------------GIPHGEAVAVGLPAVLKVANDMNPE------------- 272 (332)
T ss_pred HHHHHHHcCCCcccchHhHHhhCHHhhCc-------------CCChHHHHHHHHHHHHHHhhhcCHh-------------
Confidence 999999999 99999999999999874 7999999999999999999876543
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHH
Q psy2427 585 SRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANL 652 (660)
Q Consensus 585 ~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~i 652 (660)
+...++++++|++++|+|++|+|+|+++++++.+++.++.+.....++|+++|++++++|
T Consensus 273 --------~~~~~~~i~~l~~~lglP~~l~e~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~i 332 (332)
T cd07766 273 --------IEHAIEAVFKFLEDLGAPTDLADLGVSKEDIDKLAEKALDDKETGYNEPRPVTLEDIREA 332 (332)
T ss_pred --------HHHHHHHHHHHHHHCCCCCCHHHcCCCHHHHHHHHHHHHhcccccCCCCCCCCHHHHhhC
Confidence 223578999999999999999999999999999999998655544444999999999875
No 32
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=100.00 E-value=1.4e-56 Score=475.85 Aligned_cols=334 Identities=24% Similarity=0.323 Sum_probs=287.0
Q ss_pred ceEEECcChHHHHHHHHHhcCC--CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc
Q psy2427 29 STIRIGPGVTREVGMDMVNMKA--QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV 106 (660)
Q Consensus 29 ~~i~~G~g~~~~l~~~l~~~g~--~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~ 106 (660)
++|+||.|++++|+++++++|. ++++||||+++.+ +++.+.|++.|+++.+|+++++||+.+.|+++++.++++
T Consensus 2 ~~i~fG~g~l~~l~~~~~~~g~~~~~~lvvtd~~~~~----~~v~~~L~~~g~~~~~f~~v~~nPt~~~v~~~~~~~~~~ 77 (347)
T cd08184 2 PRYIFGRGSFDQLNDLLAPKRKNKDPAVFFVDDVFQG----KDLISRLPVESEDMIIWVDATEEPKTDQIDALTAQVKSF 77 (347)
T ss_pred CeEEECcCHHHHHHHHHHHcCCCCCeEEEEECcchhh----hHHHHHHHhcCCcEEEEcCCCCCcCHHHHHHHHHHHHhh
Confidence 5899999999999999998863 6788889988764 578888998899999999999999999999999999998
Q ss_pred ---CCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCC
Q psy2427 107 ---QCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLK 183 (660)
Q Consensus 107 ---~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~ 183 (660)
++|+||||||||+||+||+++..+.++ .+.++|.... ....+.+|+|+||||+|||||+|+++|++++ +
T Consensus 78 ~~~~~D~IIaiGGGS~iD~AKaia~~~~~~-~~~~~~~~~~-----~~~~~~~PlIaVPTTaGTGSE~t~~aVit~~--~ 149 (347)
T cd08184 78 DGKLPCAIVGIGGGSTLDVAKAVSNMLTNP-GSAEDYQGWD-----LVKNPAVYKIGIPTLSGTGAEASRTAVLMGP--E 149 (347)
T ss_pred CCCCCCEEEEeCCcHHHHHHHHHHHHHhCC-CCHHHhcccc-----cccCCCCcEEEEeCCCccccccCCcEEEEeC--C
Confidence 999999999999999999999988775 5677775321 1233458999999999999999999999986 5
Q ss_pred ceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q psy2427 184 AKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFA 263 (660)
Q Consensus 184 ~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~a 263 (660)
.|.++.++.++|+.+|+||+++.++|+++++++++|+|+|++|+|++ ...+|++|.+++++
T Consensus 150 ~K~~i~~~~~~P~~aIvDp~l~~s~P~~~ta~tGiDal~HaiEay~s-------------------~~~~p~td~~A~~a 210 (347)
T cd08184 150 RKLGMNSDFTMFDQIILDPELTAGVPRDQYFYTGMDCYIHCIESLTG-------------------TYRNEVSDAYAEKA 210 (347)
T ss_pred ceeeeecCCcCCCEEEEChHhhcCCCHHHHHHHHHHHHHHHHHHHhc-------------------CCCCHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999998 46788888888888
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHH
Q psy2427 264 LQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAP 343 (660)
Q Consensus 264 i~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~ 343 (660)
++++.+++..
T Consensus 211 i~li~~~~l~---------------------------------------------------------------------- 220 (347)
T cd08184 211 LELCRQVFLS---------------------------------------------------------------------- 220 (347)
T ss_pred HHHHHHhhhc----------------------------------------------------------------------
Confidence 8876443110
Q ss_pred HHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccC
Q psy2427 344 AVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLS 423 (660)
Q Consensus 344 ~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~ 423 (660)
T Consensus 221 -------------------------------------------------------------------------------- 220 (347)
T cd08184 221 -------------------------------------------------------------------------------- 220 (347)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy2427 424 LPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHM 503 (660)
Q Consensus 424 ~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~ 503 (660)
.+..|.++|++|
T Consensus 221 --------------------------------------------------------------------~~~~d~~ar~~m 232 (347)
T cd08184 221 --------------------------------------------------------------------DDMMSEENDDKL 232 (347)
T ss_pred --------------------------------------------------------------------cccCCHHHHHHH
Confidence 012367899999
Q ss_pred HHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCC
Q psy2427 504 HLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGAD 583 (660)
Q Consensus 504 ~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~ 583 (660)
+||+++||++|+++|+|++|+|+|+|++++ +++||+++++++|++++|+ +++++++++++
T Consensus 233 ~~As~laG~a~~~~g~g~~Hal~h~L~~~~-------------~~~HG~~~av~lp~v~~~~----~~~~~~~~~~~--- 292 (347)
T cd08184 233 MMASYLGGMSIANSQVGVCHAASYGLSLHL-------------GYHHGIANCIAFNVLEEFY----PEGVDEFRLMM--- 292 (347)
T ss_pred HHHHHHHHHHhCCcccccchhhchHhhcCC-------------CCChHHHHHHHHHHHHHHh----hhhHHHHHHHH---
Confidence 999999999999999999999999999974 7999999999999999995 45555544433
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHH
Q psy2427 584 VSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANL 652 (660)
Q Consensus 584 ~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~i 652 (660)
+ ..++|+|++|++ |+++++++++++.|+.+ .+...||+.++.+++..+
T Consensus 293 -----------------~--~~~~glp~~L~~-gv~~~~~~~~~~~a~~~-~~~~~n~~~~~~~~~~~~ 340 (347)
T cd08184 293 -----------------K--KHKIDLPKGICA-SLTDAQMDRMVASTLVH-EKPLTNALGPNWKDILTR 340 (347)
T ss_pred -----------------H--HcCCCCchHHHc-CCCHHHHHHHHHHHHhC-cccccCCCCCCHHHhcCH
Confidence 1 267999999999 99999999999999965 456789999999988643
No 33
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=100.00 E-value=2e-55 Score=471.91 Aligned_cols=340 Identities=18% Similarity=0.205 Sum_probs=288.7
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
|++|+||.|++++++++++++| +|++||+|+++.+ +..+++.+.|++.|+.+. |..+.++|+.++|+++++.+++++
T Consensus 1 p~~i~~G~g~~~~l~~~~~~~~-~r~livt~~~~~~-~~~~~v~~~L~~~~i~~~-~~~~~~~p~~~~v~~~~~~~~~~~ 77 (351)
T cd08170 1 PGRYVQGPGALDELGEYLARLG-KRALIIADEFVLD-LVGAKIEESLAAAGIDAR-FEVFGGECTRAEIERLAEIARDNG 77 (351)
T ss_pred CCcEEECCCHHHHHHHHHHHhC-CeEEEEECHHHHH-HHHHHHHHHHHhCCCeEE-EEEeCCcCCHHHHHHHHHHHhhcC
Confidence 5799999999999999999997 9999999998877 688999999999999876 677889999999999999999999
Q ss_pred CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceee
Q psy2427 108 CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTG 187 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~ 187 (660)
+|+||||||||++|+||+++.... +|+|+||||+|||||+|+++|+++++++.|..
T Consensus 78 ~D~IIavGGGS~iD~aK~ia~~~~------------------------~P~iaIPTTagTgse~t~~avi~~~~~~~k~~ 133 (351)
T cd08170 78 ADVVIGIGGGKTLDTAKAVADYLG------------------------APVVIVPTIASTDAPTSALSVIYTDDGEFEEY 133 (351)
T ss_pred CCEEEEecCchhhHHHHHHHHHcC------------------------CCEEEeCCccccCcccccceEEECCCCceeee
Confidence 999999999999999999997653 89999999999999999999999887777777
Q ss_pred eecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy2427 188 IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267 (660)
Q Consensus 188 ~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~i 267 (660)
+.++ .+|+++|+||+++.++|++++++|++|+|+|++|+|++.. .+
T Consensus 134 ~~~~-~~P~~ai~Dp~l~~t~P~~~~a~~~~Dal~h~~E~~~s~~-------------------~~-------------- 179 (351)
T cd08170 134 LFLP-RNPDLVLVDTDVIAKAPVRFLVAGIGDALATYFEARACVR-------------------SG-------------- 179 (351)
T ss_pred eecc-CCCCEEEEChHHHhhCCHHHHHHHHHHHHHHHHHHHHHHH-------------------cc--------------
Confidence 6655 7899999999999999999999999999999999998720 00
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHH
Q psy2427 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFN 347 (660)
Q Consensus 268 ~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~ 347 (660)
+.+ .
T Consensus 180 ----------~~~-----------------------------------~------------------------------- 183 (351)
T cd08170 180 ----------GPN-----------------------------------M------------------------------- 183 (351)
T ss_pred ----------Ccc-----------------------------------c-------------------------------
Confidence 000 0
Q ss_pred hhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCch
Q psy2427 348 FTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPER 427 (660)
Q Consensus 348 ~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~ 427 (660)
T Consensus 184 -------------------------------------------------------------------------------- 183 (351)
T cd08170 184 -------------------------------------------------------------------------------- 183 (351)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHH---hcCCCCHHHHHHHH
Q psy2427 428 VTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRA---VYNQDDLEARSHMH 504 (660)
Q Consensus 428 ~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~---~~~~~~~~ar~~~~ 504 (660)
++ ...+++++.+++++++++.++++++ ++++.|.++|++|+
T Consensus 184 -----------------~~-------------------~~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~~~ar~~~~ 227 (351)
T cd08170 184 -----------------FG-------------------GKPTLAALALAKLCYETLLEDGVAALAAVERGVVTPALERVV 227 (351)
T ss_pred -----------------cC-------------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 00 0224578889999999999999987 45688999999999
Q ss_pred HHH-HHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCC
Q psy2427 505 LAS-AMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGAD 583 (660)
Q Consensus 505 ~as-~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~ 583 (660)
||+ ++||++++++|++++|+|+|+|++++. .++++||+.++ +..+++.+..
T Consensus 228 ~a~~~laG~a~~~~g~~~~Hai~h~l~~~~~----------~~~~~HG~~~a-----------------~~~~~~~~~~- 279 (351)
T cd08170 228 EANTLLSGLGFESGGLAAAHAIHNGLTALPE----------THHALHGEKVA-----------------FGTLVQLVLE- 279 (351)
T ss_pred HHHHHHhhhhhccCCcHHHHHHHHhhhcccc----------cccccccchHH-----------------HHHHHHHHhc-
Confidence 997 799999999999999999999998631 12799999888 2334443321
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCC---CcHHHHHHhhccCCCCCCCC-CccCCHHHHHHHHHHH
Q psy2427 584 VSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTS---ADIPALVTGTLPQHRITKLA-PREQSEEDLANLFENS 656 (660)
Q Consensus 584 ~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~---~~i~~ia~~a~~~~~~~~~~-P~~~t~e~i~~il~~a 656 (660)
+.+...++++++|++++|+|++|+|+|+++ ++++.+++.++.+... .+| |+++|+|++++||+.+
T Consensus 280 -------~~~~~~~~~i~~l~~~lglP~~l~~~gi~~~~~~~~~~~a~~~~~~~~~-~~n~p~~~t~e~i~~i~~~~ 348 (351)
T cd08170 280 -------NRPAEEIEEVIDFCRAVGLPVTLADLGLEDVTEEELRKVAEAACAPGET-IHNMPFPVTPEDVYDAILAA 348 (351)
T ss_pred -------CCCHHHHHHHHHHHHHCCCCCcHHHcCCCCCCHHHHHHHHHHHhCChhh-hhcCCCCCCHHHHHHHHHHH
Confidence 112235799999999999999999999886 8999999999855443 456 9999999999999875
No 34
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=100.00 E-value=4.7e-55 Score=470.79 Aligned_cols=347 Identities=19% Similarity=0.230 Sum_probs=292.0
Q ss_pred ceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHH
Q psy2427 21 EYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEAT 100 (660)
Q Consensus 21 ~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~ 100 (660)
++.|.. |++|+||.|++++++++++++| +|++||+|+++++. ..+++.+.|++.|+++ +|..+.++|+.+.|++++
T Consensus 2 ~~~f~~-p~~i~~G~g~~~~l~~~l~~~g-~~~livtd~~~~~~-~~~~v~~~l~~~~~~~-~~~~~~~ep~~~~v~~~~ 77 (366)
T PRK09423 2 DRIFIS-PSKYVQGKGALARLGEYLKPLG-KRALVIADEFVLGI-VGDRVEASLKEAGLTV-VFEVFNGECSDNEIDRLV 77 (366)
T ss_pred cccccC-CceEEECCCHHHHHHHHHHHcC-CEEEEEEChhHHHH-HHHHHHHHHHhCCCeE-EEEEeCCCCCHHHHHHHH
Confidence 355665 5899999999999999999999 99999999998765 7799999999999987 577889999999999999
Q ss_pred HHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeC
Q psy2427 101 KFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYE 180 (660)
Q Consensus 101 ~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~ 180 (660)
+.++++++|+||||||||++|+||++|.... +|+|+||||+|||||+|++++++++
T Consensus 78 ~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~------------------------~p~i~IPTtagtgSe~t~~avi~~~ 133 (366)
T PRK09423 78 AIAEENGCDVVIGIGGGKTLDTAKAVADYLG------------------------VPVVIVPTIASTDAPTSALSVIYTE 133 (366)
T ss_pred HHHHhcCCCEEEEecChHHHHHHHHHHHHcC------------------------CCEEEeCCccccCccccCceEEECC
Confidence 9999999999999999999999999997653 8999999999999999999999988
Q ss_pred CCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q psy2427 181 PLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260 (660)
Q Consensus 181 ~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la 260 (660)
.++.|....++. +|+++|+||+++.++|++++++|++|+|+|++|+|++. ..++.+
T Consensus 134 ~~~~k~~~~~~~-~P~~~i~Dp~l~~tlP~~~~~~g~~Dal~ha~E~y~s~-------------------~~~~~~---- 189 (366)
T PRK09423 134 EGEFERYLFLPK-NPDLVLVDTAIIAKAPARFLAAGIGDALATWFEARACS-------------------RSGGTT---- 189 (366)
T ss_pred CCceeeeccccC-CCCEEEEchHHHHhCCHHHHHHhHHHHHHHHHHHHHHH-------------------hccccc----
Confidence 777777776664 79999999999999999999999999999999999872 111000
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHh
Q psy2427 261 RFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVM 340 (660)
Q Consensus 261 ~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai 340 (660)
. .
T Consensus 190 ------------------------------------------------------~-~----------------------- 191 (366)
T PRK09423 190 ------------------------------------------------------M-A----------------------- 191 (366)
T ss_pred ------------------------------------------------------c-c-----------------------
Confidence 0 0
Q ss_pred hHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccccccc
Q psy2427 341 SAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLH 420 (660)
Q Consensus 341 ~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~ 420 (660)
+
T Consensus 192 -----------------------------------------------------~-------------------------- 192 (366)
T PRK09423 192 -----------------------------------------------------G-------------------------- 192 (366)
T ss_pred -----------------------------------------------------c--------------------------
Confidence 0
Q ss_pred ccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHH---hcCCCCH
Q psy2427 421 TLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRA---VYNQDDL 497 (660)
Q Consensus 421 ~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~---~~~~~~~ 497 (660)
.....+++.+|+.+++.+.++++++ ++++.|+
T Consensus 193 ---------------------------------------------~~~~~~a~~~a~~~~~~l~~~~~~a~~~~~~~~~~ 227 (366)
T PRK09423 193 ---------------------------------------------GKPTLAALALAELCYETLLEDGLKAKLAVEAKVVT 227 (366)
T ss_pred ---------------------------------------------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 0123456788999999999999977 4679999
Q ss_pred HHHHHHHHHH-HHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHH
Q psy2427 498 EARSHMHLAS-AMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEA 576 (660)
Q Consensus 498 ~ar~~~~~as-~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~i 576 (660)
++|++|+||+ ++||++++++|+|++|+|+|+||+++ ..++++||+.++ +.++
T Consensus 228 ~ar~~m~~as~~laG~a~~~~g~g~~Hal~h~l~~~~----------~~~~~~HG~~~a-----------------~~~~ 280 (366)
T PRK09423 228 PALENVIEANTLLSGLGFESGGLAAAHAIHNGLTALE----------DTHHLTHGEKVA-----------------FGTL 280 (366)
T ss_pred HHHHHHHHHHHHHhhhhhccCchHHHHHHHHhhhcch----------hhhhcccccHHH-----------------HHHH
Confidence 9999999996 89999999999999999999999852 112799999888 2344
Q ss_pred HHHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCC---CCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHH
Q psy2427 577 AELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYT---SADIPALVTGTLPQHRITKLAPREQSEEDLANLF 653 (660)
Q Consensus 577 a~~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~---~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il 653 (660)
++.++. +.+..+++++++|++++|+|++|+|+|++ +++++++++.++.+.....++|+++|++++++||
T Consensus 281 ~~~~~~--------~~~~~~i~~i~~l~~~lglP~~L~~~gi~~~~~~~~~~ia~~a~~~~~~~~n~p~~~t~~~i~~il 352 (366)
T PRK09423 281 TQLVLE--------NRPKEEIEEVIDFCHAVGLPTTLADLGLKEDSDEELRKVAEAACAEGETIHNMPFKVTPEDVAAAI 352 (366)
T ss_pred HHHHhc--------CCCHHHHHHHHHHHHHCCCCCcHHHcCCCCCCHHHHHHHHHHHhCCcchhhcCCCCCCHHHHHHHH
Confidence 444421 11234589999999999999999999985 5889999999986554444559999999999999
Q ss_pred HHH
Q psy2427 654 ENS 656 (660)
Q Consensus 654 ~~a 656 (660)
+++
T Consensus 353 ~~~ 355 (366)
T PRK09423 353 LAA 355 (366)
T ss_pred HHH
Confidence 865
No 35
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=100.00 E-value=4.1e-52 Score=445.44 Aligned_cols=339 Identities=16% Similarity=0.159 Sum_probs=267.1
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
|++|+||.|++++++++++++| +|++||+|+...+ ...+++.+.|++.|+.+.++. +.++|+.+.|+++++.+++++
T Consensus 1 p~~i~~G~g~~~~l~~~~~~~g-~~~liv~~~~~~~-~~~~~v~~~l~~~~i~~~~~~-~~~~p~~~~v~~~~~~~~~~~ 77 (349)
T cd08550 1 PARYVCGDNAIKEIAAILSTFG-SKVAVVGGKTVLK-KSRPRFEAALAKSIIVVDVIV-FGGECSTEEVVKALCGAEEQE 77 (349)
T ss_pred CCeEEECcCHHHHHHHHHHHcC-CeEEEEEChHHHH-HHHHHHHHHHHhcCCeeEEEE-cCCCCCHHHHHHHHHHHHhcC
Confidence 5799999999999999999999 8999999998776 467999999999887543221 345899999999999999999
Q ss_pred CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceee
Q psy2427 108 CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTG 187 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~ 187 (660)
+|+||||||||++|+||++|.... +|+|+||||+|||||+|+++|+++++++.|..
T Consensus 78 ~d~IIavGGGs~~D~aK~ia~~~~------------------------~p~i~VPTtagtgse~t~~avi~~~~~~~k~~ 133 (349)
T cd08550 78 ADVIIGVGGGKTLDTAKAVADRLD------------------------KPIVIVPTIASTCAASSNLSVIYSDDGEFARY 133 (349)
T ss_pred CCEEEEecCcHHHHHHHHHHHHcC------------------------CCEEEeCCccccCccccceEEEEcCCCceeee
Confidence 999999999999999999997653 89999999999999999999999877666666
Q ss_pred eecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy2427 188 IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267 (660)
Q Consensus 188 ~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~i 267 (660)
+.+ ..+|+++|+||+++.++|++++++|++|+|+||+|+|++...+ ...+++++.+++++++.+
T Consensus 134 ~~~-~~~P~~~i~Dp~l~~t~P~~~~a~g~~Dal~h~~E~~~s~~~~---------------~~~~~~~~~~a~~~~~~~ 197 (349)
T cd08550 134 DFQ-KRNPDLVLVDTEVIAQSPAEYLWSGIADALAKWYEAEAVIRGR---------------EMNGSLAPLMALAVAEAC 197 (349)
T ss_pred eec-CCCCCEEEEChHHHHhCCHHHHHHhHHHHHHHHHHHHHHhhcc---------------cccccchhHHHHHHHHHH
Confidence 554 4789999999999999999999999999999999999873100 012244555555544444
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHH
Q psy2427 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFN 347 (660)
Q Consensus 268 ~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~ 347 (660)
.+.+
T Consensus 198 ~~~l---------------------------------------------------------------------------- 201 (349)
T cd08550 198 TPTL---------------------------------------------------------------------------- 201 (349)
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 4433
Q ss_pred hhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCch
Q psy2427 348 FTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPER 427 (660)
Q Consensus 348 ~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~ 427 (660)
T Consensus 202 -------------------------------------------------------------------------------- 201 (349)
T cd08550 202 -------------------------------------------------------------------------------- 201 (349)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHh---cCCCCHHHHHHHH
Q psy2427 428 VTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAV---YNQDDLEARSHMH 504 (660)
Q Consensus 428 ~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~---~~~~~~~ar~~~~ 504 (660)
.+++++++ +++.+.++|+++.
T Consensus 202 --------------------------------------------------------~~~~~~a~~~~~~~~~~~a~~~~~ 225 (349)
T cd08550 202 --------------------------------------------------------LEYGVLAVESMEAKRVTQAFEEVV 225 (349)
T ss_pred --------------------------------------------------------HHHHHHHHHHHHcCCCCHHHHHHH
Confidence 22333333 3456677787777
Q ss_pred HHHH-HHhHhhhcc----cchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHH
Q psy2427 505 LASA-MAGVGFGNA----GVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAEL 579 (660)
Q Consensus 505 ~as~-~ag~~~~~~----g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~ 579 (660)
++++ +||++++++ |++++|+|+|+|+++. ..++++||+.+++. .+++.
T Consensus 226 ~a~~~~ag~~~~~~~~~~~~~~~Hai~~~l~~~~----------~~~~~~HG~~~a~~-----------------~~~~~ 278 (349)
T cd08550 226 EANIMLAGTVFESGVDYYRLAAAHAVHNGLTALE----------ETHKVLHGEKVAYG-----------------VLVQL 278 (349)
T ss_pred HHHHHHhhhhcccCccCCccHHHHHHHHhhhccc----------cccccccccHHHHH-----------------HHHHH
Confidence 7774 577777666 9999999999999852 12379999999842 22322
Q ss_pred hCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCC--CCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHHHH
Q psy2427 580 LGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGY--TSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENS 656 (660)
Q Consensus 580 lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi--~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~a 656 (660)
+. ++ .+..+++++++|++++|+|++|+|+|+ ++++++.+++.++.+.....++|+++|+|+++++|.++
T Consensus 279 ~~---~~-----~~~~~~~~~~~l~~~lglP~~L~~~gi~~~~~~i~~ia~~a~~~~~~~~~~p~~~t~~~i~~~~~~~ 349 (349)
T cd08550 279 AL---EE-----DPREEIEELVEFYRQLGLPVTLADLGLEFSDEDIKKVASKAPATTETIHNPFGDVTEEDVAQAIIAA 349 (349)
T ss_pred HH---cC-----CCHHHHHHHHHHHHHCCCCCcHHHcCCCCCHHHHHHHHHHHcCCcchhhcCCCCCCHHHHHHHHHhC
Confidence 21 11 122458999999999999999999999 99999999999986544433448999999999999863
No 36
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=100.00 E-value=3.3e-52 Score=445.84 Aligned_cols=335 Identities=17% Similarity=0.129 Sum_probs=279.2
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
|++|+||.|++++++++++++| +|++||+|+++++. ..+++.+.|++.++.+.+|+++ |+.+.|+++++.+++++
T Consensus 2 p~~i~~G~g~l~~l~~~~~~~~-~~~liv~d~~~~~~-~~~~l~~~L~~~~~~~~~~~~~---p~~~~v~~~~~~~~~~~ 76 (347)
T cd08172 2 PGRYISGEGALDELGELLKRFG-KRPLIVTGPRSWAA-AKPYLPESLAAGEAFVLRYDGE---CSEENIERLAAQAKENG 76 (347)
T ss_pred CCeEEeCcCHHHHHHHHHHHhC-CeEEEEECHHHHHH-HHHHHHHHHhcCeEEEEEeCCC---CCHHHHHHHHHHHHhcC
Confidence 5899999999999999999996 99999999988664 6688889997777888788875 99999999999999999
Q ss_pred CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceee
Q psy2427 108 CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTG 187 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~ 187 (660)
+|+||||||||++|+||++|..+. +|+|+||||+|||||+|+++++++.+++.|..
T Consensus 77 ~D~iIavGGGs~~D~aK~ia~~~~------------------------~p~i~VPTT~gtgse~t~~avi~~~~~~~k~~ 132 (347)
T cd08172 77 ADVIIGIGGGKVLDTAKAVADRLG------------------------VPVITVPTLAATCAAWTPLSVIYDEDGAFLRV 132 (347)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHhC------------------------CCEEEecCccccCcccceeEEEEcCCCcEeee
Confidence 999999999999999999998773 89999999999999999999999876555655
Q ss_pred eecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy2427 188 IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267 (660)
Q Consensus 188 ~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~i 267 (660)
+. +..+|+.+|+||+++.++|++++++|++|+|+|++|+|++... ...+|+++.++.++++.+
T Consensus 133 ~~-~~~~P~~vi~Dp~l~~tlP~~~~~sg~~Dal~h~~E~~~s~~~----------------~~~~~~~~~~a~~~~~~~ 195 (347)
T cd08172 133 EY-LKRAPELVLVDPDLIANSPVRYLVAGIGDTLAKWYEASAISRS----------------LDSLDLFVQLALQAAKLC 195 (347)
T ss_pred cc-ccCCCCEEEECHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhc----------------cccCCchHHHHHHHHHHH
Confidence 54 4577999999999999999999999999999999999998310 015778888887777776
Q ss_pred HHHHH----HHhcCCCC---HHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHh
Q psy2427 268 RQYFK----RAVYNQDD---LEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVM 340 (660)
Q Consensus 268 ~~~l~----~~~~d~~~---~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai 340 (660)
.+.+. ++++|++| .++|+
T Consensus 196 ~~~L~~~~~~a~~~~~~~~~~~a~~------------------------------------------------------- 220 (347)
T cd08172 196 RDLLLRDSEQALQDMAAGEVTPAFE------------------------------------------------------- 220 (347)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHH-------------------------------------------------------
Confidence 66664 33332211 01110
Q ss_pred hHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccccccc
Q psy2427 341 SAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLH 420 (660)
Q Consensus 341 ~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~ 420 (660)
T Consensus 221 -------------------------------------------------------------------------------- 220 (347)
T cd08172 221 -------------------------------------------------------------------------------- 220 (347)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q psy2427 421 TLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEAR 500 (660)
Q Consensus 421 ~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar 500 (660)
..+|
T Consensus 221 ----------------------------------------------------------------------------~~~r 224 (347)
T cd08172 221 ----------------------------------------------------------------------------DVVD 224 (347)
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 1256
Q ss_pred HHHHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHh
Q psy2427 501 SHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELL 580 (660)
Q Consensus 501 ~~~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~l 580 (660)
++|+|+++++|++++++|++++|+|+|+|++++. .++++||+.+++.+|..+.++..
T Consensus 225 ~~~~~a~~~ag~~~~~~~~g~~H~l~~~l~~~~~----------~~~~~HG~~~a~~l~~~~~~~~~------------- 281 (347)
T cd08172 225 TIIALAGLVGGFGDEYGRTAGAHAVHNGLTLLPE----------THDWLHGEKVAYGILVQLALEGR------------- 281 (347)
T ss_pred HHHHHhcccccccccCCchHHHHHHHHHhhcCcc----------ccccCcchHHHHHHHHHHHHcCC-------------
Confidence 6999999999999999999999999999998631 13799999999999987764310
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCC---CCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHHH
Q psy2427 581 GADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYT---SADIPALVTGTLPQHRITKLAPREQSEEDLANLFEN 655 (660)
Q Consensus 581 g~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~---~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~ 655 (660)
...++++++|++++|+|++|+|+|++ +++++.+++.++.+.+...+||+++|+|+++++|++
T Consensus 282 -------------~~~~~~i~~l~~~lglp~~l~~~g~~~~~~~~i~~ia~~a~~~~~~~~~~p~~~~~~~i~~i~~~ 346 (347)
T cd08172 282 -------------EAEIEELLPFYRELGLPLSLAELGLLDPTDEELQKVAAFAASPKETIHLLPFPVTAEQLRQAIKK 346 (347)
T ss_pred -------------HHHHHHHHHHHHHCCCCCCHHHhCCCCCCHHHHHHHHHHHcCCcchhhcCCCCCCHHHHHHHHHh
Confidence 23478999999999999999999974 689999999998665544678999999999999986
No 37
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=100.00 E-value=3.1e-51 Score=437.76 Aligned_cols=337 Identities=18% Similarity=0.142 Sum_probs=279.0
Q ss_pred ceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCC
Q psy2427 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQC 108 (660)
Q Consensus 29 ~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~ 108 (660)
++++||.|++++++++++++| +|++||+|+..... ..+++.+.|++.|+++.+|+.+.+||+.+.|+++++.+++.++
T Consensus 2 ~~y~~G~g~~~~l~~~~~~~~-~r~liv~d~~~~~~-~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~ 79 (345)
T cd08171 2 PSYSIGEDAYKKIPEVCEKYG-KKVVVIGGKTALAA-AKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEA 79 (345)
T ss_pred CCeEeCcCHHHHHHHHHHhcC-CEEEEEeCHHHHHH-HHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCC
Confidence 589999999999999999988 99999999876643 5799999999999999999999999999999999999999999
Q ss_pred CEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceeee
Q psy2427 109 DAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGI 188 (660)
Q Consensus 109 D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~~ 188 (660)
|+||||||||++|+||+++..+. +|+|+||||+|||||+|+++|+++++++.|..+
T Consensus 80 d~iiavGGGs~~D~aK~ia~~~~------------------------~p~i~VPTt~gtgse~t~~avi~~~~~~~K~~~ 135 (345)
T cd08171 80 DMIFAVGGGKAIDTVKVLADKLG------------------------KPVFTFPTIASNCAAVTAVSVVYNDDGSFKEYY 135 (345)
T ss_pred CEEEEeCCcHHHHHHHHHHHHcC------------------------CCEEEecCccccCccccceEEEEcCCCceeecc
Confidence 99999999999999999998764 899999999999999999999998776667644
Q ss_pred ecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCH--HHHHHHHHHHHH
Q psy2427 189 ANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNP--VSDVWARFALQT 266 (660)
Q Consensus 189 ~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~--~s~~la~~ai~~ 266 (660)
++..+|+++|+||+++.++|++++++|++|+|+|++|+|++. ..++ +++.++
T Consensus 136 -~~~~~P~~~i~Dp~l~~~~P~~~~~~g~~Dal~ha~E~y~s~-------------------~~~~~~~~~~~a------ 189 (345)
T cd08171 136 -FFKNPPVHCFIDTEIIAEAPEKYLWAGIGDTLAKYYEVTFSA-------------------RGEKLDHTNLLG------ 189 (345)
T ss_pred -cccCCCCEEEECHHHHHhCCHHHHHHHHHHHHHHHHHHHHhc-------------------cccccchhHHHH------
Confidence 678899999999999999999999999999999999999883 1111 233333
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHH
Q psy2427 267 IRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVF 346 (660)
Q Consensus 267 i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l 346 (660)
T Consensus 190 -------------------------------------------------------------------------------- 189 (345)
T cd08171 190 -------------------------------------------------------------------------------- 189 (345)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCc
Q psy2427 347 NFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPE 426 (660)
Q Consensus 347 ~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~ 426 (660)
T Consensus 190 -------------------------------------------------------------------------------- 189 (345)
T cd08171 190 -------------------------------------------------------------------------------- 189 (345)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCH---HHHHHH
Q psy2427 427 RVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDL---EARSHM 503 (660)
Q Consensus 427 ~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~---~ar~~~ 503 (660)
+..++.+.+.|.++++++++|+.|. ++|++|
T Consensus 190 ----------------------------------------------~~~~~~~~~~l~~~l~~a~~~~~~~~~~~ar~~m 223 (345)
T cd08171 190 ----------------------------------------------VTISRMCSEPLLEYGKKALEDCRNNKVSYALEQV 223 (345)
T ss_pred ----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 3334444555666666666665555 499999
Q ss_pred HHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccc-hHHHHHHhccCCHHHHHHHHHHhCC
Q psy2427 504 HLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMS-APAVFNFTAASSPERHIEAAELLGA 582 (660)
Q Consensus 504 ~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~il-lp~~l~~~~~~~~~~~~~ia~~lg~ 582 (660)
+||+.+ +.|++|.++|... .++++||..++++ +|++++++......+|.+++..++.
T Consensus 224 ~~a~~~--------~~G~~~~la~~~~--------------~~~~~Hg~~~al~~lp~~~~~~~hg~~~~~~~~~~~~~~ 281 (345)
T cd08171 224 ILAIIV--------TTGIVSNLVTPDY--------------NSGLAHALFYGLTTLPHIEENHLHGEVVSYGVLVLLLVD 281 (345)
T ss_pred HHHHHH--------hhcccccccccCC--------------chHHHHHHHHHhhcCcccccccCccchhHHHHHHHHHHc
Confidence 999665 2456677776211 1258899999986 8887787777777888888887641
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHHH
Q psy2427 583 DVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFEN 655 (660)
Q Consensus 583 ~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~ 655 (660)
+ ...+++++++|++++|+|++|+|+|+++++++++++.++.+.. ..+||+++|+||++++|++
T Consensus 282 ---~------~~~~i~~i~~l~~~lglP~~L~~~gv~~~~l~~~~~~a~~~~~-~~~~p~~~t~e~i~~~~~~ 344 (345)
T cd08171 282 ---G------QEEELERIYPFNKSIGLPVCLEDLGLTEDDLEKVLEKALATQD-LKHVPYPVTKEMIAEAIKD 344 (345)
T ss_pred ---C------CHHHHHHHHHHHHHcCCCCcHHHcCCCHHHHHHHHHHhcCcch-HhhCCCCCCHHHHHHHHHh
Confidence 1 1245899999999999999999999999999999999985534 4679999999999999975
No 38
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=100.00 E-value=9.6e-47 Score=404.04 Aligned_cols=319 Identities=16% Similarity=0.137 Sum_probs=256.4
Q ss_pred ceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccC--CCHHHHHHHHHHhHhc
Q psy2427 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVE--PTGDSFLEATKFVRSV 106 (660)
Q Consensus 29 ~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~--p~~~~v~~~~~~~~~~ 106 (660)
.+|+||.|++++++++++++|.+|++||||+.+.+.. .+++.+.|++.|+++.+|..+.++ |+.+.++++++.+++
T Consensus 2 ~~i~~G~g~l~~l~~~~~~~~~~~~livtd~~~~~~~-~~~v~~~l~~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~- 79 (348)
T cd08175 2 DEIVIGEGALERLPEILKEFGYKKALIVADENTYAAA-GKKVEALLKRAGVVVLLIVLPAGDLIADEKAVGRVLKELER- 79 (348)
T ss_pred cEEEECCCHHHHHHHHHHhcCCCcEEEEECCcHHHHH-HHHHHHHHHHCCCeeEEeecCCCcccCCHHHHHHHHHHhhc-
Confidence 4799999999999999999988999999999988764 599999999999988877766665 999999999999998
Q ss_pred CCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCcee
Q psy2427 107 QCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKT 186 (660)
Q Consensus 107 ~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~ 186 (660)
++|+||||||||++|+||++|.... +|+|+||||+|||++++..++++++ +.|.
T Consensus 80 ~~d~IIaIGGGs~~D~aK~vA~~~~------------------------~p~i~IPTTagt~g~~~~~~~v~~~--g~K~ 133 (348)
T cd08175 80 DTDLIIAVGSGTINDITKYVSYKTG------------------------IPYISVPTAPSMDGYTSSGAPIILN--GFKK 133 (348)
T ss_pred cCCEEEEECCcHHHHHHHHHHHhcC------------------------CCEEEecCcccccCccCCCceEecC--Cccc
Confidence 9999999999999999999996532 8999999999999999988877664 6788
Q ss_pred eeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy2427 187 GIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQT 266 (660)
Q Consensus 187 ~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~ 266 (660)
++. ..+|+++|+||+++.++|++++++|++|+| |.|.+ ...+++++.++.
T Consensus 134 ~~~--~~~P~~viiDp~l~~slP~~~~~sg~~Dal----e~~~~-------------------~~~~~~~~~~~~----- 183 (348)
T cd08175 134 TYQ--AVAPIAIFADTDILANAPQRMIAAGFGDLL----GKYTA-------------------LADWKIAHILTG----- 183 (348)
T ss_pred ccc--CCCCeEEEEChHHHHhCCHHHHHhhHHHHH----Hhccc-------------------HHhHHHHHHhcC-----
Confidence 883 468999999999999999999999999975 56654 122333331000
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHH
Q psy2427 267 IRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVF 346 (660)
Q Consensus 267 i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l 346 (660)
T Consensus 184 -------------------------------------------------------------------------------- 183 (348)
T cd08175 184 -------------------------------------------------------------------------------- 183 (348)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCc
Q psy2427 347 NFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPE 426 (660)
Q Consensus 347 ~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~ 426 (660)
T Consensus 184 -------------------------------------------------------------------------------- 183 (348)
T cd08175 184 -------------------------------------------------------------------------------- 183 (348)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCC-----CHHHHH
Q psy2427 427 RVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD-----DLEARS 501 (660)
Q Consensus 427 ~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~-----~~~ar~ 501 (660)
+.++.++++++.++++++++++. |.++|+
T Consensus 184 ----------------------------------------------~~~~~~a~~~i~~~l~~~~~~~~~~~~~d~~ar~ 217 (348)
T cd08175 184 ----------------------------------------------EYYCETVWDLVEEALEKCLESADGLAARDEEAIK 217 (348)
T ss_pred ----------------------------------------------CcCcHHHHHHHHHHHHHHHhhHHhhhcCCHHHHH
Confidence 01233455666666666666553 568999
Q ss_pred HHHHHHHHHhHhhhccc-----chhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHH
Q psy2427 502 HMHLASAMAGVGFGNAG-----VHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEA 576 (660)
Q Consensus 502 ~~~~as~~ag~~~~~~g-----~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~i 576 (660)
+|++|+++||++|+++| ++++|+|+|.|+..+.. ...++++||+++++++|++++|+.+..++++..
T Consensus 218 ~l~~a~~laG~a~~~~g~s~~~~g~~Hal~h~l~~~~~~-------~~~~~~~HG~avai~lp~~~~~~~~~~~~~~~~- 289 (348)
T cd08175 218 QLMEALILSGLAMQLVGSSRPASGAEHHLSHYWEMEFLN-------RGKKPLLHGEKVGVGTLIVAALYERLLKKDLEG- 289 (348)
T ss_pred HHHHHHHHhhHHHHhcCCCCCCccHHHHHHHHHHHhccc-------ccCCcccchhHHHHHHHHHHHHHHHHHhccchh-
Confidence 99999999999999998 68999999999742100 001279999999999999999987654443321
Q ss_pred HHHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccC
Q psy2427 577 AELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQ 633 (660)
Q Consensus 577 a~~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~ 633 (660)
+ .....++++++|++++|+|++|+|+|+++++++++++.+...
T Consensus 290 ---~-----------~~~~~~~~i~~l~~~lglP~~l~~~gv~~~~l~~~~~~a~~~ 332 (348)
T cd08175 290 ---L-----------DKLKASAKIEELLKKVGAPTHPEEIGIDKELFRKSLILAKEI 332 (348)
T ss_pred ---h-----------cccccHHHHHHHHHHCCCCCCHHHcCCCHHHHHHHHHHHHHh
Confidence 1 012347899999999999999999999999999999998743
No 39
>PRK10586 putative oxidoreductase; Provisional
Probab=100.00 E-value=8.5e-45 Score=388.21 Aligned_cols=339 Identities=18% Similarity=0.187 Sum_probs=264.9
Q ss_pred ccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc
Q psy2427 27 ASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV 106 (660)
Q Consensus 27 ~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~ 106 (660)
.|.++++|.|++++++++++++|.+|++||+|+..++. ..+.+.+.|++.++.+.+|++ +++.++++++.+..+ .
T Consensus 11 ~p~~y~~G~ga~~~l~~~~~~~g~~~~lvv~g~~~~~~-~~~~~~~~l~~~~~~~~~~~g---~~~~~~v~~l~~~~~-~ 85 (362)
T PRK10586 11 GPANYFSHPGSIDHLHDFFTDEQLSRAVWIYGERAIAA-AQPYLPPAFELPGAKHILFRG---HCSESDVAQLAAASG-D 85 (362)
T ss_pred CCcceEECcCHHHHHHHHHHhcCCCeEEEEEChHHHHH-HHHHHHHHHHHcCCeEEEeCC---CCCHHHHHHHHHHhc-c
Confidence 35899999999999999999999899999999887665 347788899999988777765 678999999888775 5
Q ss_pred CCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCC-ce
Q psy2427 107 QCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLK-AK 185 (660)
Q Consensus 107 ~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~-~K 185 (660)
++|+||||||||++|+||++|.... +|+|+||||+|||||+|+++|++++++. .|
T Consensus 86 ~~d~iiavGGGs~iD~aK~~a~~~~------------------------~p~i~vPT~a~t~s~~s~~avi~~~~~~~~~ 141 (362)
T PRK10586 86 DRQVVIGVGGGALLDTAKALARRLG------------------------LPFVAIPTIAATCAAWTPLSVWYNDAGQALH 141 (362)
T ss_pred CCCEEEEecCcHHHHHHHHHHhhcC------------------------CCEEEEeCCccccccccCceEEECCCCCeee
Confidence 8999999999999999999996542 8999999999999999999999986642 23
Q ss_pred eeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy2427 186 TGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQ 265 (660)
Q Consensus 186 ~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~ 265 (660)
..+..+ .|.++|+||+++.++|.+++++|++|+|+||+|+|++..+ ...+++++.++.++.+
T Consensus 142 ~~~~~~--~p~~~i~D~~l~~~~P~~~~~ag~~Dal~~~~Ea~~~~~~----------------~~~~~~~~~~~~~~a~ 203 (362)
T PRK10586 142 FEIFDD--ANFLVLVEPRIILNAPQEYLLAGIGDTLAKWYEAVVLAPQ----------------PETLPLTVRLGINNAL 203 (362)
T ss_pred ecccCC--CCCEEEEChHHHhcCCHHHHHHHHHHHHHHHHHHHHcccc----------------ccCCchhHHHHHHHHH
Confidence 444444 3999999999999999999999999999999999986210 2456788888888888
Q ss_pred HHHHHHHH----HhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhh
Q psy2427 266 TIRQYFKR----AVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMS 341 (660)
Q Consensus 266 ~i~~~l~~----~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~ 341 (660)
++.+.+.+ ++.|..+.
T Consensus 204 ~~~~~l~~~~~~a~~~~~~~------------------------------------------------------------ 223 (362)
T PRK10586 204 AIRDVLLNSSEQALADQQNG------------------------------------------------------------ 223 (362)
T ss_pred HHHHHHHHHHHHHHHHHHcC------------------------------------------------------------
Confidence 88877744 22110000
Q ss_pred HHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccc
Q psy2427 342 APAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHT 421 (660)
Q Consensus 342 l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~ 421 (660)
T Consensus 224 -------------------------------------------------------------------------------- 223 (362)
T PRK10586 224 -------------------------------------------------------------------------------- 223 (362)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q psy2427 422 LSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARS 501 (660)
Q Consensus 422 ~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~ 501 (660)
..-+++-+.+| .
T Consensus 224 ----------~~~~~~~~vv~----------------------------------------------------------a 235 (362)
T PRK10586 224 ----------QLTQDFCDVVD----------------------------------------------------------A 235 (362)
T ss_pred ----------CCCHHHHHHHH----------------------------------------------------------H
Confidence 00011111122 2
Q ss_pred HHHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhC
Q psy2427 502 HMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLG 581 (660)
Q Consensus 502 ~~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg 581 (660)
.++.+++++|+++.+++++++|+++|+|+.+. ..++++||+.+++-+-..+.+ .|
T Consensus 236 ~i~~~g~~s~~g~~~~~~a~aHai~~~lt~~~----------~~~~~lHGeaVa~G~l~~l~l---------------~~ 290 (362)
T PRK10586 236 IIAGGGMVGGLGERYTRVAAAHAVHNGLTVLP----------QTEKFLHGTKVAYGILVQSAL---------------LG 290 (362)
T ss_pred HHHHhhhhhhcccCCCccHHHHHHHHcccccc----------CCCcCCCHHHHHHHHHHHHHH---------------cC
Confidence 44567888999999999999999999999762 223699998888433322211 11
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCC---CcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHHHH
Q psy2427 582 ADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTS---ADIPALVTGTLPQHRITKLAPREQSEEDLANLFENS 656 (660)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~---~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~a 656 (660)
.. ...+++++|++++|+|++|+|+|+++ ++++.+++.++..+...+++|+++|+|+++++|+++
T Consensus 291 ------~~-----~~~~~l~~~l~~lGLP~~L~dlGi~~~~~e~l~~ia~~a~~~~~~~~~~p~~vt~e~i~~ai~~~ 357 (362)
T PRK10586 291 ------QD-----DVLAQLIGAYQRFHLPTTLAELDVDINNQAEIDRVIAHTLRPVESIHYLPVTLTPDTLRAAFEKV 357 (362)
T ss_pred ------CH-----HHHHHHHHHHHHcCCCCCHHHCCCCCCCHHHHHHHHHHHcCCcchhhcCCCCCCHHHHHHHHHHH
Confidence 01 13688999999999999999999974 889999999987665667789999999999999865
No 40
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=100.00 E-value=1.8e-44 Score=384.93 Aligned_cols=328 Identities=18% Similarity=0.162 Sum_probs=269.3
Q ss_pred cceEEECcChHHHHHHHHHh-cCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc
Q psy2427 28 SSTIRIGPGVTREVGMDMVN-MKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV 106 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~-~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~ 106 (660)
|++|+||+|+++++++++++ .+.+|++||+|+++++ .+.+++.+.|++.+ .+.+| +.++|+.++|+++++.++++
T Consensus 2 p~~i~~g~g~l~~l~~~l~~~~~~~~~liv~d~~~~~-~~~~~v~~~l~~~~-~~~~~--~~~~~~~~~v~~~~~~~~~~ 77 (339)
T cd08173 2 PRDVVVGHGVLEKIPNVLRDLLLGGRVLVVTGPTTKS-IAGKKVEALLEDEG-EVDVV--IVEDATYEEVEKVESSARDI 77 (339)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCCeEEEEECCchHH-HHHHHHHHHHHhcC-CeEEE--EeCCCCHHHHHHHHHHhhhc
Confidence 58999999999999999985 4558999999999887 57799999999988 77666 56799999999999999999
Q ss_pred CCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCcee
Q psy2427 107 QCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKT 186 (660)
Q Consensus 107 ~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~ 186 (660)
++|+||||||||++|+||++|.... +|+|+||||+|||||+|+.++++++ ++|+
T Consensus 78 ~~d~iIaiGGGs~~D~aK~~a~~~~------------------------~p~i~iPTT~~t~s~~s~~a~i~~~--~~k~ 131 (339)
T cd08173 78 GADFVIGVGGGRVIDVAKVAAYKLG------------------------IPFISVPTAASHDGIASPRASIKGN--GKPI 131 (339)
T ss_pred CCCEEEEeCCchHHHHHHHHHHhcC------------------------CCEEEecCcccCCcccCCceEEEeC--CceE
Confidence 9999999999999999999995432 8999999999999999999999875 3465
Q ss_pred eeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy2427 187 GIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQT 266 (660)
Q Consensus 187 ~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~ 266 (660)
.+.. ..|.++|+||+++.++|++++++|++|+|+|+.+..-. .
T Consensus 132 ~~~~--~~P~~vi~Dp~l~~tlP~~~~~sg~~Dal~k~~~~~~~----------------------------------~- 174 (339)
T cd08173 132 SIKA--KPPLAVIADTGIIAKAPRRLLAAGCGDIISNYTAVRDW----------------------------------R- 174 (339)
T ss_pred EecC--CCCeEEEEcHHHHHhCCHHHHHHhHHHHHhhhHHHHHH----------------------------------H-
Confidence 5533 57999999999999999999999999999985321100 0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHH
Q psy2427 267 IRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVF 346 (660)
Q Consensus 267 i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l 346 (660)
+ +
T Consensus 175 ----~--------------------------------------~------------------------------------ 176 (339)
T cd08173 175 ----L--------------------------------------A------------------------------------ 176 (339)
T ss_pred ----H--------------------------------------H------------------------------------
Confidence 0 0
Q ss_pred HhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCc
Q psy2427 347 NFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPE 426 (660)
Q Consensus 347 ~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~ 426 (660)
T Consensus 177 -------------------------------------------------------------------------------- 176 (339)
T cd08173 177 -------------------------------------------------------------------------------- 176 (339)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy2427 427 RVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLA 506 (660)
Q Consensus 427 ~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~a 506 (660)
|++|. ...+++++.+|+++++.+.+++++ ++++.|.++| .|+.+
T Consensus 177 ------------~~~~~----------------------~~~~~~~~~~a~~~~~~i~~~~~~-~~~~~~~~~r-~l~~a 220 (339)
T cd08173 177 ------------HRLKG----------------------EYYSEYAASLALMSAKMVIKNADE-IKPGLEESVR-VVVKA 220 (339)
T ss_pred ------------HhccC----------------------CCCCHHHHHHHHHHHHHHHHhHHH-HhhccHHHHH-HHHHH
Confidence 00000 023467788999999999999999 5788899998 89999
Q ss_pred HHHHhHhhhccc-----chhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhC
Q psy2427 507 SAMAGVGFGNAG-----VHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLG 581 (660)
Q Consensus 507 s~~ag~~~~~~g-----~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg 581 (660)
+.++|++++++| .+..|.++|.|+..+. ++++||+.+|+.++. +..++
T Consensus 221 ~~~~G~~~~~~g~~~~~~g~~H~~~hal~~~~~-----------~~~~HG~~Va~g~~v----------------~~~l~ 273 (339)
T cd08173 221 LISSGVAMSIAGSSRPASGSEHLFSHALDRLAP-----------GKALHGEQCGVGTII----------------MMYLH 273 (339)
T ss_pred HHHhhHHHhhcCCCCCCchHHHHHHHHHHHhCC-----------CCCccHhHHHHHHHH----------------HHHHc
Confidence 999999999998 5889999999998631 369999999977532 22222
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHh--hccCCCCCCCCCccCCHHHHHHHHHH
Q psy2427 582 ADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTG--TLPQHRITKLAPREQSEEDLANLFEN 655 (660)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~--a~~~~~~~~~~P~~~t~e~i~~il~~ 655 (660)
. ..++++++|++++|+|++|+++|++++++.+..+. .+..++++.+||+++|+|+++++|+.
T Consensus 274 ~------------~~~~~i~~l~~~lglp~~l~~lgi~~~~~~~~~~~~~k~~~~~~~~~~p~~~~~~~~~~~~~~ 337 (339)
T cd08173 274 G------------GNWRRIRDALKKVGAPTTAKELGIDDEIVIEALTIAHKIRPERYTILGEVGLTREAAEKAAEI 337 (339)
T ss_pred C------------ccHHHHHHHHHHCCCCCCHHHcCCCHHHHHHHHHHHHhcCCcceEeecCCCCCHHHHHHHHHh
Confidence 1 02578999999999999999999998887766543 35556788899999999999999974
No 41
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=100.00 E-value=6.8e-40 Score=348.10 Aligned_cols=280 Identities=16% Similarity=0.152 Sum_probs=231.0
Q ss_pred cceEEECcChHHHHHHHHHhcCC-CEEEEEECccccccchHHHHHHHHHhCCCeEEEEe-CcccCCCHHHHHHHHHHhHh
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKA-QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFD-KVRVEPTGDSFLEATKFVRS 105 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~-~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~-~~~~~p~~~~v~~~~~~~~~ 105 (660)
|++|+||.|++++++++++++|. +|++||||+++.+.. .+++.+.|++.|+++.+|. ++.++|+.++++++++.+++
T Consensus 1 p~~i~~G~g~l~~l~~~~~~~~~~~kvlivtd~~~~~~~-~~~i~~~L~~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~ 79 (332)
T cd08549 1 PKEIVVGEGAINDIGPIINKIGVNSKIMIVCGNNTYKVA-GKEIIERLESNNFTKEVLERDSLLIPDEYELGEVLIKLDK 79 (332)
T ss_pred CcEEEECCChHHHHHHHHHHcCCCCcEEEEECCcHHHHH-HHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhc
Confidence 57999999999999999998874 899999999988763 5999999999998877765 77889999999999999999
Q ss_pred cCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCce
Q psy2427 106 VQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAK 185 (660)
Q Consensus 106 ~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K 185 (660)
++|+||||||||++|+||++|... + +|+|+||||++++++.++.+.+... ++|
T Consensus 80 -~~d~IIaiGGGsv~D~aK~iA~~~--g----------------------ip~I~VPTT~~~~g~~s~v~~~~~~--~k~ 132 (332)
T cd08549 80 -DTEFLLGIGSGTIIDLVKFVSFKV--G----------------------KPFISVPTAPSMDGYASSVASLIVN--GKK 132 (332)
T ss_pred -CCCEEEEECCcHHHHHHHHHHHHc--C----------------------CCEEEeCCCcccCcccCCceEEeeC--Cce
Confidence 999999999999999999999443 2 8999999999877666666665432 444
Q ss_pred eeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHH---HHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q psy2427 186 TGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCH---ALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARF 262 (660)
Q Consensus 186 ~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~h---aiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ 262 (660)
... +..+|..||+||+++.++|++++++|++|+|+| ++|+|++.. ...+++++..+ .
T Consensus 133 ~~~--~~~~P~~viiDp~~l~tlP~~~~~ag~~D~l~k~~~~~d~~~~~~-----------------~~~~~~~~~~~-~ 192 (332)
T cd08549 133 RSV--SAVYPEIIVGDIDIISQAPYEFITAGFGDVISNYTALADWYISSV-----------------ITGETYSDDIA-A 192 (332)
T ss_pred Eee--cCCCCcEEEEcHHHHHhCCHHHHHHhHHHHHHhhhHHHHHHHHHH-----------------hcCcccCHHHH-H
Confidence 443 678899999999999999999999999999986 789988731 12355666554 2
Q ss_pred HHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhhhccCCc-----cccccccccCCCcccccCCCCCCCCCCCcCch
Q psy2427 263 ALQTIRQYFKRAVY--NQDDLEARSHMHLASAMAGVGFGNAGV-----HLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 335 (660)
Q Consensus 263 ai~~i~~~l~~~~~--d~~~~~ar~~l~~as~laG~a~~~~g~-----~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG 335 (660)
.++.+.+.....+. ++.|.++|..|++|++++|+++.|.|. +.+|+|+|+|+..+. ..++||
T Consensus 193 ~~~~~i~~~~~~~~~~~~~d~~~~~~l~~a~~~~G~~~~n~G~s~~~s~~~Hti~Hale~~~~-----------~~~~HG 261 (332)
T cd08549 193 MVKESINKVIDASTGILGRDEKSIKELVEALIINGIAMLIAGNSRPASGAEHHLSHALDMREP-----------EPHLHG 261 (332)
T ss_pred HHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHhhHhheecCCCCCcchHHHHHHHHHHHcCC-----------CCcccH
Confidence 23334444444444 678999999999999999999999885 889999999998653 138999
Q ss_pred hHHHhhHHHHHHhhhcCCchhhhhHhhhhccc
Q psy2427 336 LSVVMSAPAVFNFTAASSPERHIEAAELLGAD 367 (660)
Q Consensus 336 ~avai~l~~~l~~~~~~~~er~~~la~~lg~~ 367 (660)
++|+++|+..+++... ..+++.++.+.+|.+
T Consensus 262 eaVaigm~~~~~l~~~-~~~~i~~ll~~~glp 292 (332)
T cd08549 262 TQVGVTTIIISEIHHY-TLDDIKKFLSKKGSL 292 (332)
T ss_pred HHHHHHHHHHHHHhcc-cHHHHHHHHHHcCCC
Confidence 9999999999998764 788999999999975
No 42
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=100.00 E-value=3.3e-38 Score=328.70 Aligned_cols=174 Identities=21% Similarity=0.207 Sum_probs=154.9
Q ss_pred ccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc
Q psy2427 27 ASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV 106 (660)
Q Consensus 27 ~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~ 106 (660)
.|.++++|.|+++++++++.+.+.+|++||+|+.+++. ..+++.+.|+..|+. ++..+.++++.++++++...+.+.
T Consensus 7 ~P~~~~~G~~~i~~~~~~~~~~~~~~~lvv~g~~~~~~-~~~~~~~~l~~~g~~--~~~~~~~~a~~~ev~~~~~~~~~~ 83 (360)
T COG0371 7 LPREYIQGKGAINKLLEVLLKLGLSRALVVTGENTYAI-AGEKVEKSLKDEGLV--VHVVFVGEASEEEVERLAAEAGED 83 (360)
T ss_pred cCceEEECCChhhhHHHHHHhccCCceEEEEChhHHHH-HHHHHHHHhcccCcc--eeeeecCccCHHHHHHHHHHhccc
Confidence 35899999999999999999988899999999999887 559999999999873 334456799999999999999988
Q ss_pred CCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccC-ceEEeeCCCCce
Q psy2427 107 QCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTG-VSIFDYEPLKAK 185 (660)
Q Consensus 107 ~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~-~avi~~~~~~~K 185 (660)
++|+|||||||+++|+||++|...+ +|+|+|||++|+|+.+|+ .++++++. |.|
T Consensus 84 ~~d~vIGVGGGk~iD~aK~~A~~~~------------------------~pfIsvPT~AS~Da~~Sp~aSv~~~~~-g~~ 138 (360)
T COG0371 84 GADVVIGVGGGKTIDTAKAAAYRLG------------------------LPFISVPTIASTDAITSPVASVIYNGK-GDK 138 (360)
T ss_pred CCCEEEEecCcHHHHHHHHHHHHcC------------------------CCEEEecCccccccccCCceeeEEcCC-Cce
Confidence 9999999999999999999999886 999999999999999999 56776644 467
Q ss_pred eeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhc
Q psy2427 186 TGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTA 230 (660)
Q Consensus 186 ~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s 230 (660)
+++... .|.++|+|++++..+|.|++++|++|+|++|+|..-+
T Consensus 139 ~~~~~~--~P~~vivD~evI~~AP~r~L~AGiGD~lakw~e~~dw 181 (360)
T COG0371 139 YSFLAK--APDAVIVDTEVIAAAPRRLLAAGIGDALAKWTEARDW 181 (360)
T ss_pred eeeecC--CCcEEEEcHHHHHhChHHHHHhcchHhhhhHHHHHHH
Confidence 776543 4999999999999999999999999999999998744
No 43
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=100.00 E-value=2.5e-38 Score=336.73 Aligned_cols=276 Identities=20% Similarity=0.179 Sum_probs=218.9
Q ss_pred cceEEECcChHHHHHHHHH--hcCCCEEEEEECccccccchHHHHHHHHHhCCC-eEEEEeCcccCCCHHHHHHHHHHhH
Q psy2427 28 SSTIRIGPGVTREVGMDMV--NMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGV-KFELFDKVRVEPTGDSFLEATKFVR 104 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~--~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi-~~~~~~~~~~~p~~~~v~~~~~~~~ 104 (660)
|++|+||.|++++++++++ ..+.+|++||+|+.+ .+++.+.|++.++ .+..+. ...+++.+.+.+.++..+
T Consensus 1 ~~~i~~G~g~l~~l~~~l~~~~~~~~r~livtd~~~-----~~~~~~~L~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~ 74 (331)
T cd08174 1 PLVLDIGEGAIARLGELLSDRNPNFGRVAVVSGPGV-----GEQVAESLKTSFSAEVEAVE-EVSNSDAEEIGARARSIP 74 (331)
T ss_pred CcEEEECcCHHHHHHHHHHHHHhcCCceEEEECCcH-----HHHHHHHHHhccCceEEEec-CCCccCHHHHHHHHHhcc
Confidence 5899999999999999998 455589999999886 4788889988776 444443 234555555555555444
Q ss_pred hcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCc
Q psy2427 105 SVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKA 184 (660)
Q Consensus 105 ~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~ 184 (660)
++|+||||||||++|+||++|.... +|+|+||||++|||++|+.+++++++++.
T Consensus 75 --~~d~iIaiGGGsv~D~aK~vA~~~~------------------------~p~i~vPTt~~tgs~~s~~a~i~~~~~k~ 128 (331)
T cd08174 75 --NVDAVVGIGGGKVIDVAKYAAFLRG------------------------IPLSVPTTNLNDDGIASPVAVLTDEGGKR 128 (331)
T ss_pred --CCCEEEEeCCcHHHHHHHHHHhhcC------------------------CCEEEecCccccCccccCceEEEeCCCee
Confidence 6999999999999999999998422 89999999999999999999999865443
Q ss_pred eeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHh-hcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q psy2427 185 KTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESF-TALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFA 263 (660)
Q Consensus 185 K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~-~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~a 263 (660)
+. . .. +|++||+||+++.++|++++++|++|+|+|+.|.| |.. ...... ...+++++.+++.+
T Consensus 129 ~~-~--~~-~P~~vi~D~~~l~tlP~~~~~aG~~Dalak~~~~~d~~~-~~~~~~-----------~~~~~~~~~~a~~~ 192 (331)
T cd08174 129 SS-L--AA-IPIGVVIDLDVIRSAPRRLILAGIGDLISNITALADWEL-AHERGG-----------EPVDGLAALLSRAA 192 (331)
T ss_pred ee-c--CC-CCcEEEEcHHHHHhCCHHHHHhhHHHHHHhcchHHHHHH-HHHhcC-----------CCccHHHHHHHHHH
Confidence 33 2 33 89999999999999999999999999999998765 210 000000 12478999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCc-----cccccccccCCCcccccCCCCCCCCCCCcCchhHH
Q psy2427 264 LQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGV-----HLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSV 338 (660)
Q Consensus 264 i~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~-----~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~av 338 (660)
++.+.+..+. ..|.+.++.+++|++++|++++++|. +++|+|+|+|+..+. ..++||++|
T Consensus 193 ~~~l~~~~~~----~~d~~~~~~l~~a~~laG~a~~~~g~~~~~~~~~H~i~h~l~~~~~-----------~~~~HG~~V 257 (331)
T cd08174 193 AEAVLRHPGS----ITDPEFLKTLAEGLVLSGIAMEIAGNSRPASGAEHLISHALDKLAP-----------GPALHGEQV 257 (331)
T ss_pred HHHHHhcccc----cCCHHHHHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHhcCC-----------CccccHHHH
Confidence 9998888776 36678899999999999999999986 689999999998642 138999999
Q ss_pred HhhHHHHHHhhhcCCchhhhhHhhhhccc
Q psy2427 339 VMSAPAVFNFTAASSPERHIEAAELLGAD 367 (660)
Q Consensus 339 ai~l~~~l~~~~~~~~er~~~la~~lg~~ 367 (660)
++++.....+.. ...+++.++.+.+|.|
T Consensus 258 a~g~~~~~~l~~-~~~~~i~~~l~~~glp 285 (331)
T cd08174 258 GLATYFMSHLRG-HHTERIQKLLTLTGFF 285 (331)
T ss_pred HHHHHHHHHHcC-CcHHHHHHHHHHcCCC
Confidence 999777766543 3567888888888875
No 44
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=1.4e-36 Score=324.92 Aligned_cols=283 Identities=17% Similarity=0.175 Sum_probs=227.9
Q ss_pred eEEeccceEEECcChHHHHHHHHHhcCC-CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHH
Q psy2427 23 AFEMASSTIRIGPGVTREVGMDMVNMKA-QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATK 101 (660)
Q Consensus 23 ~~~~~~~~i~~G~g~~~~l~~~l~~~g~-~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~ 101 (660)
.|.. |++|+||.|+++++++++++++. +|++||+|+++.+. ..+++.+.|++.+ ++.+| +.++|+.++++++++
T Consensus 7 ~~~~-p~~i~~G~g~l~~l~~~l~~~~~~~~~livtd~~~~~~-~~~~l~~~l~~~~-~~~~~--~~~~~t~~~v~~~~~ 81 (350)
T PRK00843 7 WIQL-PRDVVVGHGVLDDIGDVCSDLKLTGRALIVTGPTTKKI-AGDRVEENLEDAG-DVEVV--IVDEATMEEVEKVEE 81 (350)
T ss_pred EEeC-CCeEEECCCHHHHHHHHHHHhCCCCeEEEEECCcHHHH-HHHHHHHHHHhcC-CeeEE--eCCCCCHHHHHHHHH
Confidence 3444 58999999999999999999875 89999999998876 5688999999888 76655 567999999999999
Q ss_pred HhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCC
Q psy2427 102 FVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEP 181 (660)
Q Consensus 102 ~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~ 181 (660)
.+++.++|+||||||||++|+||++|.. ++ +|+|+||||++|||++|+.+++++..
T Consensus 82 ~~~~~~~d~IIaiGGGsv~D~ak~vA~~--rg----------------------ip~I~IPTT~~tds~~s~~a~i~~~~ 137 (350)
T PRK00843 82 KAKDVNAGFLIGVGGGKVIDVAKLAAYR--LG----------------------IPFISVPTAASHDGIASPRASIKGGG 137 (350)
T ss_pred HhhccCCCEEEEeCCchHHHHHHHHHHh--cC----------------------CCEEEeCCCccCCcccCCceEEEeCC
Confidence 9999999999999999999999999943 32 89999999999999999999998642
Q ss_pred CCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHH--HHh--hcCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q psy2427 182 LKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL--ESF--TALPYTERTPCPTDPLLRPAYQGQNPVSD 257 (660)
Q Consensus 182 ~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~hai--E~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~s~ 257 (660)
.|... ....|++||+||+++.++|.+++++|++|+|+|+. +.+ +.. .. ....+++..
T Consensus 138 --~~~~~--~~~~P~~vivD~~~l~tlP~~~~~sg~~d~l~k~~~~~d~~~~~~----l~-----------~~~~~~~~~ 198 (350)
T PRK00843 138 --KPVSV--KAKPPLAVIADTEIIAKAPYRLLAAGCGDIISNYTAVKDWRLAHR----LR-----------GEYYSEYAA 198 (350)
T ss_pred --ceeee--cCCCCeEEEEcHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHh----cc-----------CCCCCHHHH
Confidence 34433 34679999999999999999999999999998854 332 111 00 012456777
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCC-----ccccccccccCCCcccccCCCCCCCCCCCc
Q psy2427 258 VWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAG-----VHLCHGLSYPISGNVKTFHPAGYSDDHPII 332 (660)
Q Consensus 258 ~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g-----~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~ 332 (660)
.+++.+++.+.++.+.+.+ .+...++.+..+...+|+++.++| ++++|+++|+|+.... ..+
T Consensus 199 ~~a~~~~~~i~~~~~~i~~--~~~~~~~~v~~~~~~~G~~~~~~g~~r~~l~~gHti~hale~~~~-----------~~~ 265 (350)
T PRK00843 199 ALSLMTAKMLIENADIIKP--GLEESARLVVKALISSGVAMSIAGSSRPASGSEHLFSHALDRLAP-----------GPA 265 (350)
T ss_pred HHHHHHHHHHHHhHHHHhh--ccHHHHHHHHHHHHHhHHHHhhcCCCCCcchHHHHHHHHHHHcCC-----------CCC
Confidence 8888898988888776553 233344558888889999887665 5689999999986532 138
Q ss_pred CchhHHHhhHHHHHHhhhcCCchhhhhHhhhhccc
Q psy2427 333 PHGLSVVMSAPAVFNFTAASSPERHIEAAELLGAD 367 (660)
Q Consensus 333 ~HG~avai~l~~~l~~~~~~~~er~~~la~~lg~~ 367 (660)
+||++||++|...+.+.. ...+++.++.+.+|+|
T Consensus 266 ~HGeaVa~G~~~~~~l~~-~~~~~i~~ll~~~glP 299 (350)
T PRK00843 266 LHGEQCGVGTIIMMYLHG-GDWRKIRDALKKIGAP 299 (350)
T ss_pred ccHHHHHHHHHHHHHHcC-ccHHHHHHHHHHcCCC
Confidence 999999999998887753 3578888888888864
No 45
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=100.00 E-value=5.4e-33 Score=298.48 Aligned_cols=271 Identities=19% Similarity=0.207 Sum_probs=208.1
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEE--EEeCcccCCCHHHHHHHHHHhHh
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE--LFDKVRVEPTGDSFLEATKFVRS 105 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~--~~~~~~~~p~~~~v~~~~~~~~~ 105 (660)
|.+|+||.|+++++++++++++.+|++||+|+.+.+. +.+++.+.|++.|+++. +|++++++|+.+.++++++.+++
T Consensus 9 ~~~v~~G~g~~~~l~~~l~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~ 87 (358)
T PRK00002 9 SYPIIIGKGLLSELGELLAPLKGKKVAIVTDETVAPL-YLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIYDALLE 87 (358)
T ss_pred CCcEEEeCChHHHHHHHHHhcCCCeEEEEECCchHHH-HHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999987799999999998774 77999999999988766 47889999999999999999999
Q ss_pred cCC---CEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC--CcCccccCceEEeeC
Q psy2427 106 VQC---DAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS--GTGSETTGVSIFDYE 180 (660)
Q Consensus 106 ~~~---D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~--gtgse~s~~avi~~~ 180 (660)
.++ |+||||||||++|+||++|..+.++ +|+|+||||+ .+++++++.++++.+
T Consensus 88 ~~~~r~d~IIavGGGsv~D~aK~iA~~~~~g----------------------ip~i~IPTT~~s~~ds~~~~k~~i~~~ 145 (358)
T PRK00002 88 AGLDRSDTLIALGGGVIGDLAGFAAATYMRG----------------------IRFIQVPTTLLAQVDSSVGGKTGINHP 145 (358)
T ss_pred cCCCCCCEEEEEcCcHHHHHHHHHHHHhcCC----------------------CCEEEcCchhhhccccCcCCceecCCc
Confidence 877 9999999999999999999877654 8999999996 447888999888664
Q ss_pred CCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHH--HH-hhcCCCCCCCCCCCCCCCCCCCCCCCHH--
Q psy2427 181 PLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL--ES-FTALPYTERTPCPTDPLLRPAYQGQNPV-- 255 (660)
Q Consensus 181 ~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~hai--E~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~-- 255 (660)
.. | .+.++..+|..+|+||+++.++|++++++|++|+++|++ ++ ++.... ......
T Consensus 146 ~~--K-~~~g~~~~P~~vi~Dp~l~~tlP~~~~~~G~~d~ik~~~i~d~~~~~~l~----------------~~~~~~~~ 206 (358)
T PRK00002 146 LG--K-NLIGAFYQPKAVLIDLDFLKTLPERELRAGLAEVIKYGLIADPEFFEWLE----------------ANVDALLA 206 (358)
T ss_pred cc--c-eeeeecCCCceEEEcHHHHccCCHHHHHhhHHHHHHHHhhCCHHHHHHHH----------------hhHHHHhh
Confidence 32 4 456677889999999999999999999999999999998 43 333100 000111
Q ss_pred --HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCC-Cc
Q psy2427 256 --SDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHP-II 332 (660)
Q Consensus 256 --s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~-~~ 332 (660)
.+.+.+...+.+......+..|+.+...|.-+ +++|.++|+|+...+ + .+
T Consensus 207 ~~~~~~~~~i~~~i~~k~~~v~~d~~e~g~r~~l----------------n~GHt~~HalE~~~~-----------~~~~ 259 (358)
T PRK00002 207 LDGEALEEAIARSCEIKADVVAADERESGLRALL----------------NFGHTFGHAIEAETG-----------YGKW 259 (358)
T ss_pred cCHHHHHHHHHHHHHHHHHHHcCCCccccccHHH----------------hccchHHHHHhcccC-----------CCCc
Confidence 23344444444444555556677666666532 246777777776432 1 39
Q ss_pred CchhHHHhhHHHHHHhhhc------CCchhhhhHhhhhccc
Q psy2427 333 PHGLSVVMSAPAVFNFTAA------SSPERHIEAAELLGAD 367 (660)
Q Consensus 333 ~HG~avai~l~~~l~~~~~------~~~er~~~la~~lg~~ 367 (660)
+||++|+++|.....+... ...+++.++.+.+|.+
T Consensus 260 ~HG~aVa~Gm~~~~~l~~~~g~~~~~~~~~~~~~l~~~g~p 300 (358)
T PRK00002 260 LHGEAVAIGMVMAARLSERLGLLSEADAERIRALLERAGLP 300 (358)
T ss_pred ChHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999888776532 2355666666666653
No 46
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=100.00 E-value=1e-32 Score=295.00 Aligned_cols=275 Identities=18% Similarity=0.192 Sum_probs=207.7
Q ss_pred ceEEECcChHHHHHHHHHhc-CCCEEEEEECccccccchHHHHHHHHHhCCCeEE--EEeCcccCCCHHHHHHHHHHhHh
Q psy2427 29 STIRIGPGVTREVGMDMVNM-KAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE--LFDKVRVEPTGDSFLEATKFVRS 105 (660)
Q Consensus 29 ~~i~~G~g~~~~l~~~l~~~-g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~--~~~~~~~~p~~~~v~~~~~~~~~ 105 (660)
.+|+||.|+++++++++... +.+|++||+|+++.+ .+.+++.+.|++.|+++. +|++++++|+.+.+.++++.+++
T Consensus 2 y~i~~G~g~~~~l~~~~~~~~~~~~~livtd~~~~~-~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~ 80 (345)
T cd08195 2 YPIYIGSGLLKELGELLAKLPKGSKILIVTDENVAP-LYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLYDALLE 80 (345)
T ss_pred eeEEEcCchHhHHHHHHHhccCCCeEEEEECCchHH-HHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHHHHHHH
Confidence 47899999999999987654 458999999999887 577999999999886554 67889999999999999999999
Q ss_pred cCC---CEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCC--cCccccCceEEeeC
Q psy2427 106 VQC---DAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSG--TGSETTGVSIFDYE 180 (660)
Q Consensus 106 ~~~---D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~g--tgse~s~~avi~~~ 180 (660)
+++ |+||||||||++|+||++|..+.++ +|+|+||||++ ++|++++...++..
T Consensus 81 ~~~~r~d~IIaiGGGsv~D~ak~vA~~~~rg----------------------ip~i~VPTT~~a~vds~~~~k~~i~~~ 138 (345)
T cd08195 81 AGLDRKSLIIALGGGVVGDLAGFVAATYMRG----------------------IDFIQIPTTLLAQVDSSVGGKTGVNHP 138 (345)
T ss_pred cCCCCCCeEEEECChHHHhHHHHHHHHHhcC----------------------CCeEEcchhHHHHhhccCCCcceecCC
Confidence 888 9999999999999999999887755 89999999963 37888888887554
Q ss_pred CCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHH---HHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q psy2427 181 PLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL---ESFTALPYTERTPCPTDPLLRPAYQGQNPVSD 257 (660)
Q Consensus 181 ~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~hai---E~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~ 257 (660)
. .|. ..++..+|.+||+||+++.++|++++++|++|+++|++ +.++.....+. ........+
T Consensus 139 ~--~kn-~~g~~~~P~~viiD~~~l~tlP~~~~~~G~~d~ik~~~i~d~~~~~~l~~~~------------~~~~~~~~~ 203 (345)
T cd08195 139 L--GKN-LIGAFYQPKLVLIDTDFLKTLPEREFRSGLAEVIKYGLIADAELFEWLEENK------------EAILALDPE 203 (345)
T ss_pred C--CCc-eecccCCCCEEEEehHHhhhCCHHHHHhHHHHHHHHHhhCCHHHHHHHHhhH------------HHHhccCHH
Confidence 2 343 45667889999999999999999999999999999998 66655210000 000001123
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhH
Q psy2427 258 VWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLS 337 (660)
Q Consensus 258 ~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~a 337 (660)
.+.+...+.+......+.+|+.+...|.- +.++|.++|+|+...+ + ..++||++
T Consensus 204 ~~~~~i~~~i~~k~~~v~~d~~e~~~r~~----------------ln~GHt~gHalE~~~~-~---------~~~~HGea 257 (345)
T cd08195 204 ALEEIIARSCEIKAEVVEQDEREKGLRAI----------------LNFGHTFGHAIEALTG-Y---------GTLLHGEA 257 (345)
T ss_pred HHHHHHHHHHHHHHHHhccCccccCCcee----------------ecCcccchHHHHhhcC-C---------CCcchHHH
Confidence 34444444455555555567766655551 3356888888876532 0 13899999
Q ss_pred HHhhHHHHHHhhhc------CCchhhhhHhhhhccc
Q psy2427 338 VVMSAPAVFNFTAA------SSPERHIEAAELLGAD 367 (660)
Q Consensus 338 vai~l~~~l~~~~~------~~~er~~~la~~lg~~ 367 (660)
|+++|.....+... ...+++.++.+.+|.+
T Consensus 258 VaiGm~~~~~l~~~~g~~~~~~~~~i~~~l~~~g~p 293 (345)
T cd08195 258 VAIGMVAAARLSERLGLLSEEDLERIEKLLKKLGLP 293 (345)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Confidence 99999999887643 2356777777777764
No 47
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=100.00 E-value=1.5e-32 Score=293.84 Aligned_cols=267 Identities=17% Similarity=0.229 Sum_probs=209.8
Q ss_pred eEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeE--EEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 30 TIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKF--ELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 30 ~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~--~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
+|+||.|+++++++++++ + +|++||+|+++.+. ..+++.+.|++.|+++ .+|++++++|+.++++++++.+++++
T Consensus 2 ~v~~G~g~l~~l~~~l~~-~-~~~livtd~~~~~~-~~~~v~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~ 78 (344)
T TIGR01357 2 PVHVGEGLLDQLVEELAE-P-SKLVIITDETVADL-YADKLLEALQALGYNVLKLTVPDGEESKSLETVQRLYDQLLEAG 78 (344)
T ss_pred eEEEeCChHHHHHHHhhc-C-CeEEEEECCchHHH-HHHHHHHHHHhcCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcC
Confidence 689999999999999988 4 89999999998876 6799999999988865 46888999999999999999999988
Q ss_pred C---CEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC--CcCccccCceEEeeCCC
Q psy2427 108 C---DAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS--GTGSETTGVSIFDYEPL 182 (660)
Q Consensus 108 ~---D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~--gtgse~s~~avi~~~~~ 182 (660)
+ |+||||||||++|+||++|..+.++ +|+|+||||+ .+++++++...++.+.
T Consensus 79 ~~r~d~IIavGGGsv~D~aK~iA~~~~~~----------------------~p~i~VPTT~~a~~ds~~~~k~~i~~~~- 135 (344)
T TIGR01357 79 LDRSSTIIALGGGVVGDLAGFVAATYMRG----------------------IRFIQVPTTLLAMVDSSVGGKTGINFPG- 135 (344)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHHccC----------------------CCEEEecCchhheeccccCcceeEeCCC-
Confidence 7 9999999999999999999877654 8999999985 5588998888876543
Q ss_pred CceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHH-------HHhhcCCCCCCCCCCCCCCCCCCCCCCCH-
Q psy2427 183 KAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL-------ESFTALPYTERTPCPTDPLLRPAYQGQNP- 254 (660)
Q Consensus 183 ~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~hai-------E~~~s~~~~~~~~~~~~~~~~~~~~~~~~- 254 (660)
.|. ..+....|+.+|+||+++.++|++++++|++|+++|++ +.++... .....
T Consensus 136 -~kn-~~~~~~~P~~viiDp~l~~tlP~~~~~~G~~d~ik~~~i~d~~~~~~l~~~~-----------------~~~~~~ 196 (344)
T TIGR01357 136 -GKN-LIGTFYQPKAVLIDPDFLKTLPDRELRSGMAEVIKHGLIADAELFDELESND-----------------KLVLRL 196 (344)
T ss_pred -Cce-EEeeccCCceEEEcHHHHhhCCHHHHHhHHHHHHHHHhhCCHHHHHHHHhhH-----------------HHHhcc
Confidence 343 33556789999999999999999999999999999998 4443310 00111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcC
Q psy2427 255 -VSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIP 333 (660)
Q Consensus 255 -~s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~ 333 (660)
..+.+++...+.+....+.+..|+.+...|.-+ ..+|.++|+|+...+ |+ .++
T Consensus 197 ~~~~~~~~~i~~~i~~k~~~~~~d~~e~~~r~~l----------------~~GHt~~Hale~~~~-~~---------~~~ 250 (344)
T TIGR01357 197 QELEHLEELIKRSIEVKASIVAEDEKESGLRAIL----------------NFGHTIGHAIEAEAG-YG---------KIP 250 (344)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccCCCcccchHHh----------------hcchhHHHHHHhhcC-CC---------CCC
Confidence 255677777777777777777888777777621 135888888876531 11 299
Q ss_pred chhHHHhhHHHHHHhhhcC------CchhhhhHhhhhccc
Q psy2427 334 HGLSVVMSAPAVFNFTAAS------SPERHIEAAELLGAD 367 (660)
Q Consensus 334 HG~avai~l~~~l~~~~~~------~~er~~~la~~lg~~ 367 (660)
||++|+++|....++.... ..+++.++.+.+|.+
T Consensus 251 HG~avaig~~~~~~la~~~~~~~~~~~~~i~~~l~~~g~p 290 (344)
T TIGR01357 251 HGEAVAIGMVCEAKLSERLGLLPAELIERLVQLLKRYGLP 290 (344)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999888876321 245666666666653
No 48
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=100.00 E-value=2.8e-32 Score=290.79 Aligned_cols=272 Identities=15% Similarity=0.095 Sum_probs=194.9
Q ss_pred eEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeE--EEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 30 TIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKF--ELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 30 ~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~--~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
+|+||.|+++++++++.++|.+|++||||+++++. +.+++.+.|++.|+++ .+|++++++|+.++++++++.+++++
T Consensus 3 ~v~~G~g~l~~l~~~l~~~g~~rvlvVtd~~v~~~-~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~ 81 (355)
T cd08197 3 PYYLGENILDSVLGYLPELNADKYLLVTDSNVEDL-YGHRLLEYLREAGAPVELLSVPSGEEHKTLSTLSDLVERALALG 81 (355)
T ss_pred EEEEcCChHHHHHHHHHhcCCCeEEEEECccHHHH-HHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcC
Confidence 68999999999999999998899999999998876 7799999999988764 46789999999999999999999999
Q ss_pred CC---EEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCc--CccccCceEEeeCCC
Q psy2427 108 CD---AFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGT--GSETTGVSIFDYEPL 182 (660)
Q Consensus 108 ~D---~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gt--gse~s~~avi~~~~~ 182 (660)
+| +||||||||++|+||++|..+.++ +|+|+||||+++ +|.++....++.
T Consensus 82 ~dr~~~IIAvGGGsv~D~ak~~A~~~~rg----------------------ip~I~IPTTlla~~da~i~~k~~vn~--- 136 (355)
T cd08197 82 ATRRSVIVALGGGVVGNIAGLLAALLFRG----------------------IRLVHIPTTLLAQSDSVLSLKQAVNS--- 136 (355)
T ss_pred CCCCcEEEEECCcHHHHHHHHHHHHhccC----------------------CCEEEecCcccccccccccCceeeeC---
Confidence 98 999999999999999999887654 899999999644 444444333322
Q ss_pred CceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHH----HHH
Q psy2427 183 KAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPV----SDV 258 (660)
Q Consensus 183 ~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~----s~~ 258 (660)
+.|+.+.+....|.+||+||+++.++|++++++|++|+++|++|.-...- ..+. .....+ .+.
T Consensus 137 ~~~kn~~g~~~~P~~vivDp~~l~tlP~~~~~aG~~d~ik~a~~~~~~~~-~~l~------------~~~~~~~~~~~~~ 203 (355)
T cd08197 137 TYGKNLIGLYYPPSFIFIDTRVLRTLPERQIRSGLCETVKNALAQEPDFL-PYLE------------SDLRNALDYDPDG 203 (355)
T ss_pred CCCcceeecCCCCcEEEEcHHHHhhCCHHHHHhhHHHHHHHHHhcCHHHH-HHHH------------HhHHHhhccCHHH
Confidence 22344567778899999999999999999999999999999997632200 0000 000000 001
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHH
Q psy2427 259 WARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSV 338 (660)
Q Consensus 259 la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~av 338 (660)
+.+...+.+.-....+.+|+.+...|. -++++|+++|+|+.... ..++||++|
T Consensus 204 ~~~~i~~s~~~k~~vv~~D~~e~g~r~----------------~Ln~GHT~ghalE~~~~-----------~~~~HGeaV 256 (355)
T cd08197 204 LEEIIRLSIEAKLPVLSGDPYEKKLGL----------------ILEYGHTVGHAVELLSQ-----------GGLTHGEAV 256 (355)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccccch----------------hhhCcccccHHHHhhcC-----------CCcChHHHH
Confidence 111111112122222334554443333 14566777777765431 138999999
Q ss_pred HhhHHHHHHhhhc------CCchhhhhHhhhhccc
Q psy2427 339 VMSAPAVFNFTAA------SSPERHIEAAELLGAD 367 (660)
Q Consensus 339 ai~l~~~l~~~~~------~~~er~~~la~~lg~~ 367 (660)
|++|....++... ...+++.++.+.++++
T Consensus 257 a~Gm~~~~~ls~~~g~~~~~~~~~i~~~l~~~~lp 291 (355)
T cd08197 257 AIGMLVAAEIARRMGLLSEEDVALHYELLSKLGLP 291 (355)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Confidence 9999988776542 2455666677777764
No 49
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=100.00 E-value=6.7e-33 Score=279.25 Aligned_cols=247 Identities=21% Similarity=0.247 Sum_probs=190.3
Q ss_pred EECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEE
Q psy2427 32 RIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAF 111 (660)
Q Consensus 32 ~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~I 111 (660)
++|+|+++++++.+++++.+|++||+|++.++. ..+++.+.|++.|+++.++.....+++.+++.++.+.++..++|+|
T Consensus 1 ~ig~ga~~~l~~~l~~~~~~~~lvv~d~~t~~~-~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i 79 (250)
T PF13685_consen 1 VIGPGALDKLPEILSELGLKKVLVVTDENTYKA-AGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLI 79 (250)
T ss_dssp EEESS-GGGHHHHHGGGT-SEEEEEEETTHHHH-HHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EE
T ss_pred CcCccHHHHHHHHHHhcCCCcEEEEEcCCHHHH-HHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEE
Confidence 479999999999999998899999999999887 5599999999999999877767778999999999999998999999
Q ss_pred EEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceeeeecC
Q psy2427 112 IAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANR 191 (660)
Q Consensus 112 IavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~~~~~ 191 (660)
||||||+++|++|++|...+ +|+++|||.+|+++.+|+.+.+..+ ++.|.++. +
T Consensus 80 i~vGgG~i~D~~K~~A~~~~------------------------~p~isVPTa~S~DG~aS~~Asl~~~-~g~k~s~~-~ 133 (250)
T PF13685_consen 80 IGVGGGTIIDIAKYAAFELG------------------------IPFISVPTAASHDGFASPVASLTVD-DGFKVSYG-P 133 (250)
T ss_dssp EEEESHHHHHHHHHHHHHHT--------------------------EEEEES--SSGGGTSSEEEEEET--TEEEEE--E
T ss_pred EEeCCcHHHHHHHHHHHhcC------------------------CCEEEeccccccccccCCCeeEEec-CCCceeec-C
Confidence 99999999999999999886 8999999999999999999999875 47888884 3
Q ss_pred CCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHH---HHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q psy2427 192 ALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL---ESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIR 268 (660)
Q Consensus 192 ~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~hai---E~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~i~ 268 (660)
...|..+|+|.+++.++|.+++++|.+|.+++.. ++.++. .+.+.+++.+.+++.
T Consensus 134 a~~P~aIiaD~dIi~~AP~~l~~aG~GDli~k~tA~~DW~La~----------------------~~~e~~~~~~~~~v~ 191 (250)
T PF13685_consen 134 AKAPIAIIADTDIIANAPRRLIAAGFGDLISKYTALADWKLAH----------------------EYGEPYCEYAADMVE 191 (250)
T ss_dssp ----SEEEEEHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHH----------------------HTTS---HHHHHHHH
T ss_pred CCCCeEEEEeHHHHHhCCHHHHHhhHHHHHHhhhhHHHHHHHH----------------------HhhhhHHHHHHHHHH
Confidence 4569999999999999999999999999999974 455552 123356777888888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHH
Q psy2427 269 QYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 339 (660)
Q Consensus 269 ~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~ava 339 (660)
+.+..++.+++|.+.-..|+.+..++|++++.-.+|.+|.|+|+++... ...+||++|+
T Consensus 192 ~~~~~~~~~~~d~~~i~~L~~~L~~sg~amSRPaSGsEH~~sH~le~~~------------~~~lHG~~Vg 250 (250)
T PF13685_consen 192 EALRNILKDPDDPEAIKALMEALIMSGLAMSRPASGSEHLFSHALEMLA------------KPALHGEQVG 250 (250)
T ss_dssp HHHH---S-TT-HHHHHHHHHHHHHHHHHHSTTT-SHHHHHHHHHHHH-------------S---HHHHHH
T ss_pred HHHHHHHcCcCcHHHHHHHHHHHHHcccccCCCccchhhHHHHHHHhhc------------CCCccccccC
Confidence 8998888888899999999999999999998888999999999998764 1389999986
No 50
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=100.00 E-value=7.9e-32 Score=286.92 Aligned_cols=266 Identities=15% Similarity=0.105 Sum_probs=195.6
Q ss_pred ceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHh-CCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTR-HGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 29 ~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~-~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
.+|+||.|++++++++++.++.+|++||+|+++.+ .+.+++.+.|++ .++.+.+|++++++|+.++++++++.+++++
T Consensus 2 y~v~~G~g~l~~l~~~~~~~~~~k~livtd~~v~~-~~~~~v~~~L~~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~ 80 (344)
T cd08169 2 YNVAFGEHVLESVESYTTRDLFDQYFFISDSGVAD-LIAHYIAEYLSKILPVHILVIEGGEEYKTFETVTRILERAIALG 80 (344)
T ss_pred ccEEEcCChHHHHHHHHHhcCCCeEEEEECccHHH-HHHHHHHHHHHhhcCceEEEeCCCCCCCCHHHHHHHHHHHHHcC
Confidence 36899999999999999998889999999999887 477999999987 7888889999999999999999999999876
Q ss_pred ---CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC--CcCccccCceEEeeCCC
Q psy2427 108 ---CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS--GTGSETTGVSIFDYEPL 182 (660)
Q Consensus 108 ---~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~--gtgse~s~~avi~~~~~ 182 (660)
+|+||||||||++|+||++|..+.++ +|+|+||||+ +++|.+++...++..
T Consensus 81 ~~r~d~IIaiGGGsv~D~ak~vA~~~~rg----------------------ip~i~VPTTlla~~ds~~g~k~~i~~~-- 136 (344)
T cd08169 81 ANRRTAIVAVGGGATGDVAGFVASTLFRG----------------------IAFIRVPTTLLAQSDSGVGGKTGINLK-- 136 (344)
T ss_pred CCCCcEEEEECCcHHHHHHHHHHHHhccC----------------------CcEEEecCCcccccccCccceEeEecC--
Confidence 89999999999999999999988755 8999999985 446777777766543
Q ss_pred CceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHh---hcCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q psy2427 183 KAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESF---TALPYTERTPCPTDPLLRPAYQGQNPVSDVW 259 (660)
Q Consensus 183 ~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~---~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~l 259 (660)
.|+.+.+....|+.||+||+++.++|++++++|++|+++|++-.. +... ..+ ...+
T Consensus 137 -~~kn~~g~~~~P~~viiDp~~l~tlP~~~~~~G~~e~ik~~~~~d~~~~~~l------------------~~~--~~~~ 195 (344)
T cd08169 137 -GGKNLLGTFYPPRAVFLDLRFLKTLPPRQILSGVAEIVKVALIKDAELFELL------------------EDH--LNSL 195 (344)
T ss_pred -CCceeecccCCCCEEEEcHHHHhhCCHHHHHhHHHHHHHHHhhCCHHHHHHH------------------Hhh--HHHH
Confidence 244555666789999999999999999999999999999986321 1100 000 0000
Q ss_pred H---HH-HHHHHHHHH----HHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCC
Q psy2427 260 A---RF-ALQTIRQYF----KRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPI 331 (660)
Q Consensus 260 a---~~-ai~~i~~~l----~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~ 331 (660)
. .. ..+++.+.+ ..+..|+.+...|.- ..++|.++|+|+.... +.
T Consensus 196 ~~~~~~~~~~~i~~~~~~k~~~v~~d~~e~g~r~~----------------ln~GHt~gHalE~~~~-----------~~ 248 (344)
T cd08169 196 NVYSLAVLEEYINRCISIKMSVIVGDEKESGIRRI----------------LNYGHTFGHAIELATD-----------FG 248 (344)
T ss_pred hhcCHHHHHHHHHHHHHHHhhhccCCcccccchhh----------------hhccchhhHHHhcCCC-----------CC
Confidence 0 00 111222221 122334434333331 3355666666654321 13
Q ss_pred cCchhHHHhhHHHHHHhhhc------CCchhhhhHhhhhccc
Q psy2427 332 IPHGLSVVMSAPAVFNFTAA------SSPERHIEAAELLGAD 367 (660)
Q Consensus 332 ~~HG~avai~l~~~l~~~~~------~~~er~~~la~~lg~~ 367 (660)
++||++||++|.....+... ...+++.++.+.+|.+
T Consensus 249 ~~HGeaVa~Gm~~~~~l~~~~g~~~~~~~~~i~~~l~~~glp 290 (344)
T cd08169 249 IPHGEAVAVGMIYANVIANRLGLLSEHDYSRIYNLLKKLGLP 290 (344)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999998876543 3456677777777764
No 51
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=99.98 E-value=4.9e-31 Score=284.04 Aligned_cols=271 Identities=16% Similarity=0.101 Sum_probs=192.1
Q ss_pred cceEEECcChHHHHHHHHHhc-------CCCEEEEEECcccccc--chHHHHHHHHHhCCCeEEEEe-------CcccCC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNM-------KAQRVCVMTDPHLSKL--APVKATLDSLTRHGVKFELFD-------KVRVEP 91 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~-------g~~r~liVtd~~~~~~--~~~~~i~~~L~~~gi~~~~~~-------~~~~~p 91 (660)
+.+|++|.|.++.+++.+.+. +.+|++||||+++.+. +..+++.+.|++.|+++.+|+ +..++|
T Consensus 13 ~y~i~i~~~~~~~~~~~~~~~~~~~~~~~~~r~liVtD~~v~~~~~~l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~ 92 (389)
T PRK06203 13 EYPVYFTRDLFSPENPLLAEVLAADGEGKPKKVLVVIDSGVLRAHPDLLEQITAYFAAHADVLELVAEPLVVPGGEAAKN 92 (389)
T ss_pred ceeEEEeCChhhhhHHHHHHhhhhccccCCCeEEEEECchHHHhhhhHHHHHHHHHHhcCCceeeeeeEEEccCCccCCC
Confidence 367899999999999888643 2489999999998763 567899999998887654433 447777
Q ss_pred CHHHHHHHHHHhHhcCCC---EEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcC
Q psy2427 92 TGDSFLEATKFVRSVQCD---AFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTG 168 (660)
Q Consensus 92 ~~~~v~~~~~~~~~~~~D---~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtg 168 (660)
+.+.+.++.+.++++++| +||||||||++|+||++|.++.++ +|+|+|||| ++
T Consensus 93 ~~~~v~~i~~~~~~~~~dr~d~IIaiGGGsv~D~ak~iA~~~~rg----------------------ip~I~IPTT--ll 148 (389)
T PRK06203 93 DPALVEALHAAINRHGIDRHSYVLAIGGGAVLDMVGYAAATAHRG----------------------VRLIRIPTT--VL 148 (389)
T ss_pred cHHHHHHHHHHHHHcCCCCCceEEEeCCcHHHHHHHHHHHHhcCC----------------------CCEEEEcCC--Cc
Confidence 789999999999998887 999999999999999999877654 899999999 44
Q ss_pred ccccCceEEeeCCC-CceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCC
Q psy2427 169 SETTGVSIFDYEPL-KAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRP 247 (660)
Q Consensus 169 se~s~~avi~~~~~-~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~ 247 (660)
|+++...+.....+ ..|+.+.++...|++||+||+++.++|++++++|++|++++++=.
T Consensus 149 a~vda~~g~~~~v~~~~~kn~~g~~~~P~~vi~Dp~~l~tlP~~~~~~G~~e~iK~~~i~-------------------- 208 (389)
T PRK06203 149 AQNDSGVGVKNGINAFGKKNFLGTFAPPYAVINDFAFLTTLPDRDWRAGLAEAVKVALIK-------------------- 208 (389)
T ss_pred cccCCCccchhheecCCCceeeccccCCCEEEEcHHHHhhCCHHHHHhHHHHHHHHHhhc--------------------
Confidence 55543332211111 135677788899999999999999999999999999999987511
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH------HHH--hhhh---ccCCccccccccccCCCc
Q psy2427 248 AYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLAS------AMA--GVGF---GNAGVHLCHGLSYPISGN 316 (660)
Q Consensus 248 ~~~~~~~~s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as------~la--G~a~---~~~g~~~~H~i~h~l~~~ 316 (660)
...+-+.+.. +..... + .+.+..+++...+ .++ +..+ .+..++++|+++|+|++.
T Consensus 209 ----d~~~~~~l~~--------~~~~~~-~-~~~~~~~~~i~~~~~~k~~~v~~~~d~~e~g~r~~Ln~gHt~gHAlE~~ 274 (389)
T PRK06203 209 ----DAAFFDWLEA--------HAAALA-A-RDPEAMEELIYRCAELHLEHIAGGGDPFEFGSSRPLDFGHWSAHKLEQL 274 (389)
T ss_pred ----CHHHHHHHHH--------hHHHHh-c-CCHHHHHHHHHHHHHHHHhhcccCCCccccCCcCccccchhhhhhhhhc
Confidence 1111111111 111100 0 0111112222211 111 2112 345688899999999974
Q ss_pred ccccCCCCCCCCCCCcCchhHHHhhHHHHHHhhhc------CCchhhhhHhhhhccc
Q psy2427 317 VKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAA------SSPERHIEAAELLGAD 367 (660)
Q Consensus 317 ~~~~~~~~~~~~~~~~~HG~avai~l~~~l~~~~~------~~~er~~~la~~lg~~ 367 (660)
.. +.++||++||++|+..+.++.. ...+|+.++++.+|.+
T Consensus 275 ~~-----------~~i~HGeAVAiGm~~~~~ls~~~g~~~~~~~~ri~~l~~~lglp 320 (389)
T PRK06203 275 TN-----------YALRHGEAVAIGIALDSLYSYLLGLLSEAEAQRILALLRALGFP 320 (389)
T ss_pred CC-----------CCCCcHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Confidence 31 2399999999999888776654 4578999999999875
No 52
>PLN02834 3-dehydroquinate synthase
Probab=99.97 E-value=1.3e-30 Score=283.92 Aligned_cols=265 Identities=20% Similarity=0.226 Sum_probs=188.5
Q ss_pred cceEEECcChHHHHHHHHHhc-CCCEEEEEECccccccchHHHHHHHHHhCCCeEEE----EeCcccCCCHHHHHHHHHH
Q psy2427 28 SSTIRIGPGVTREVGMDMVNM-KAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFEL----FDKVRVEPTGDSFLEATKF 102 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~-g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~----~~~~~~~p~~~~v~~~~~~ 102 (660)
+.+|+||.|++++ ++++... +.+|++||||+++.+. +.+++.+.|++.|+++.+ +.+.+.+|+.+.++++++.
T Consensus 78 ~y~I~iG~g~l~~-~~~l~~~~~g~rvlIVtD~~v~~~-~~~~v~~~L~~~g~~~~v~~~v~~~gE~~ksl~~v~~~~~~ 155 (433)
T PLN02834 78 SYPIYIGSGLLDH-GELLQRHVHGKRVLVVTNETVAPL-YLEKVVEALTAKGPELTVESVILPDGEKYKDMETLMKVFDK 155 (433)
T ss_pred ceeEEEeCCcccC-HHHHhhccCCCEEEEEECccHHHH-HHHHHHHHHHhcCCceEEEEEEecCCcCCCCHHHHHHHHHH
Confidence 4678999999999 9988862 3389999999999887 789999999999886544 5677889999999999999
Q ss_pred hHhcCCC---EEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEee
Q psy2427 103 VRSVQCD---AFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDY 179 (660)
Q Consensus 103 ~~~~~~D---~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~ 179 (660)
+++.++| +|||||||+++|+||++|..+.++ +|+|+||||+ .+++ |
T Consensus 156 l~~~~~dr~~~VIAiGGGsv~D~ak~~A~~y~rg----------------------iplI~VPTTl--------lA~v-D 204 (433)
T PLN02834 156 ALESRLDRRCTFVALGGGVIGDMCGFAAASYQRG----------------------VNFVQIPTTV--------MAQV-D 204 (433)
T ss_pred HHhcCCCcCcEEEEECChHHHHHHHHHHHHhcCC----------------------CCEEEECCcC--------CeEE-e
Confidence 9999988 999999999999999999888765 8999999996 2333 4
Q ss_pred CCCCceeeeecC--------CCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHH-------HHhhcCCCCCCCCCCCCCC
Q psy2427 180 EPLKAKTGIANR--------ALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL-------ESFTALPYTERTPCPTDPL 244 (660)
Q Consensus 180 ~~~~~K~~~~~~--------~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~hai-------E~~~s~~~~~~~~~~~~~~ 244 (660)
...+.|.++.++ ...|++||+||+++.++|++++++|++|++++++ |+.... ..
T Consensus 205 ss~ggK~~i~~~~~KNlig~f~~P~~VivDp~~l~tlP~r~~~sG~~E~iK~~~i~d~~~fe~l~~~----~~------- 273 (433)
T PLN02834 205 SSVGGKTGVNHPLGKNMIGAFYQPQCVLIDTDTLATLPDRELASGIAEVVKYGLIRDAEFFEWQEAN----ME------- 273 (433)
T ss_pred cCCCceeEEecCCcccccccccCCCEEEEcHHHHhhCCHHHHHhHHHHHHHHHHhcCHHHHHHHHhh----HH-------
Confidence 444556666544 6689999999999999999999999999998864 222210 00
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCC
Q psy2427 245 LRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAG 324 (660)
Q Consensus 245 ~~~~~~~~~~~s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~ 324 (660)
...... ...++....+.+......+-.|+.+...|. ..| ++|+++|+|+...+ |+
T Consensus 274 ---~~~~~~--~~~l~~~i~~s~~~K~~vv~~d~~e~G~r~------------~Ln----~GHT~gHAiE~~~~-~~--- 328 (433)
T PLN02834 274 ---KLLARD--PGALAYAIKRSCENKAEVVSLDEKESGLRA------------TLN----LGHTFGHAIETGPG-YG--- 328 (433)
T ss_pred ---hHhccC--HHHHHHHHHHHHHHHHHhhcCCCcccchhh------------hhc----CcHHHHHHHHhhcC-CC---
Confidence 000001 122233233333333433334443333332 124 44555555554321 11
Q ss_pred CCCCCCCcCchhHHHhhHHHHHHhhhc------CCchhhhhHhhhhccc
Q psy2427 325 YSDDHPIIPHGLSVVMSAPAVFNFTAA------SSPERHIEAAELLGAD 367 (660)
Q Consensus 325 ~~~~~~~~~HG~avai~l~~~l~~~~~------~~~er~~~la~~lg~~ 367 (660)
.++||++||++|.....+... ...+++.++.+.+|+|
T Consensus 329 ------~~~HGeaVaiGm~~~~~ls~~~G~~~~~~~~~i~~ll~~~gLP 371 (433)
T PLN02834 329 ------EWLHGEAVAAGTVMAADMSYRLGWIDMSLVNRIFALLKRAKLP 371 (433)
T ss_pred ------CCChHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Confidence 389999999999998766543 2356777777777754
No 53
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=99.97 E-value=7.3e-30 Score=271.20 Aligned_cols=173 Identities=17% Similarity=0.094 Sum_probs=144.0
Q ss_pred ceEEECcChHHHHHHHHHh-------cCCCEEEEEECcccccc--chHHHHHHHHHhCCCeEEEE-------eCcccCCC
Q psy2427 29 STIRIGPGVTREVGMDMVN-------MKAQRVCVMTDPHLSKL--APVKATLDSLTRHGVKFELF-------DKVRVEPT 92 (660)
Q Consensus 29 ~~i~~G~g~~~~l~~~l~~-------~g~~r~liVtd~~~~~~--~~~~~i~~~L~~~gi~~~~~-------~~~~~~p~ 92 (660)
.+|++|.|.++++++.+.+ .+.+|++||||+++.+. ++.+++.+.|++.|+.+.+| ++....+.
T Consensus 2 y~v~i~~~~~~~~~~~l~~~~~~~~~~~~~r~lvVtD~~v~~~~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~ 81 (369)
T cd08198 2 YPVHFTRRAFSPENPLLADLLSAKEGGARPKVLVVIDSGVAQANPQLASDIQAYAAAHADALRLVAPPHIVPGGEACKND 81 (369)
T ss_pred ceEEEeCCchhhhHHHHHhhhccccccCCCeEEEEECcchHHhhhhHHHHHHHHHHhcCCceeeeeeeEecCCCccCCCh
Confidence 4789999999999998873 23489999999998773 45688999998888554433 45555555
Q ss_pred HHHHHHHHHHhHhcCCC---EEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCc
Q psy2427 93 GDSFLEATKFVRSVQCD---AFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGS 169 (660)
Q Consensus 93 ~~~v~~~~~~~~~~~~D---~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgs 169 (660)
.+.+.++++.+.++++| +|||||||+++|+||++|..+.++ +|+|+|||| ++|
T Consensus 82 ~~~v~~i~~~l~~~~~~r~~~IIalGGG~v~D~ag~vA~~~~rG----------------------ip~I~IPTT--lla 137 (369)
T cd08198 82 PDLVEALHAAINRHGIDRHSYVIAIGGGAVLDAVGYAAATAHRG----------------------VRLIRIPTT--VLA 137 (369)
T ss_pred HHHHHHHHHHHHHcCCCcCcEEEEECChHHHHHHHHHHHHhcCC----------------------CCEEEECCC--chh
Confidence 79999999999999997 999999999999999999988765 999999999 567
Q ss_pred cccCceEEeeCCCC-ceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHH
Q psy2427 170 ETTGVSIFDYEPLK-AKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL 225 (660)
Q Consensus 170 e~s~~avi~~~~~~-~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~hai 225 (660)
+++...+..+..+. .|+.+.++...|..||+||+++.|+|++++++|.+|+++|++
T Consensus 138 ~vDs~~g~k~~vn~~~~knlvg~f~~P~~viiDp~~l~tlP~r~~~~G~aE~iK~~~ 194 (369)
T cd08198 138 QNDSGVGVKNGINAFGKKNFLGTFAPPYAVINDFAFLTTLPDRDKRAGLAEAVKVAL 194 (369)
T ss_pred hhCCCeeeeecccCCCCcceeccccCCCEEEEcHHHHhhCCHHHHHhhHHHHHHHHh
Confidence 77655555443333 477888888999999999999999999999999999999986
No 54
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=99.97 E-value=2e-29 Score=268.98 Aligned_cols=171 Identities=20% Similarity=0.267 Sum_probs=148.3
Q ss_pred ceEEECcChHHHHHHHHHhc---CCCEEEEEECccccccchHHHHHHHHHhCCCeEE--EEeCcccCCCHHHHHHHHHHh
Q psy2427 29 STIRIGPGVTREVGMDMVNM---KAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE--LFDKVRVEPTGDSFLEATKFV 103 (660)
Q Consensus 29 ~~i~~G~g~~~~l~~~l~~~---g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~--~~~~~~~~p~~~~v~~~~~~~ 103 (660)
.+|++|.|.++++++.+... +.+|++||+|+++.+. ..+++.+.|++.|+++. +|++++++|+.++++++++.+
T Consensus 2 y~i~~~~~~~~~~~~~~~~~~~~~~~~~lvVtd~~v~~~-~~~~v~~~l~~~g~~~~~~v~~~~e~~~s~~~v~~~~~~l 80 (354)
T cd08199 2 YEVVLLDGLLDPSNPLLLDVYLEGSGRRFVVVDQNVDKL-YGKKLREYFAHHNIPLTILVLRAGEAAKTMDTVLKIVDAL 80 (354)
T ss_pred eeEEEeCCccccchHHHHHhhccCCCeEEEEECccHHHH-HHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHH
Confidence 36899999999999999865 4689999999998765 56899999998888776 679999999999999999999
Q ss_pred HhcCC----CEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC--CcCccccCceEE
Q psy2427 104 RSVQC----DAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS--GTGSETTGVSIF 177 (660)
Q Consensus 104 ~~~~~----D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~--gtgse~s~~avi 177 (660)
++.++ |+|||||||+++|+||++|..+.++ +|+|+||||+ ..++++++...+
T Consensus 81 ~~~~~~r~~d~IVaiGGG~v~D~ak~~A~~~~rg----------------------~p~i~VPTT~lA~vD~~~g~K~~i 138 (354)
T cd08199 81 DAFGISRRREPVLAIGGGVLTDVAGLAASLYRRG----------------------TPYVRIPTTLVGLIDAGVGIKTGV 138 (354)
T ss_pred HHcCCCCCCCEEEEECCcHHHHHHHHHHHHhcCC----------------------CCEEEEcCccceeeecCCCCceEE
Confidence 99999 9999999999999999999988765 8999999985 358888888777
Q ss_pred eeCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHH
Q psy2427 178 DYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL 225 (660)
Q Consensus 178 ~~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~hai 225 (660)
+....+.+.+ ....|..||+||+++.++|++++++|++|++++++
T Consensus 139 ~~~~~kn~ig---~~~~P~~viiD~~~l~tlP~~~~~~G~~e~ik~~~ 183 (354)
T cd08199 139 NFGGYKNRLG---AYHPPTLTLLDRSFLATLPERHIRNGLAEIIKMAV 183 (354)
T ss_pred eCCCCccccc---cCCCCCEEEEcHHHHhhCCHHHHHhHHHHHHHHHH
Confidence 6553333333 34569999999999999999999999999999986
No 55
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=99.96 E-value=8.6e-29 Score=262.64 Aligned_cols=266 Identities=13% Similarity=0.079 Sum_probs=192.5
Q ss_pred ceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCC
Q psy2427 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQC 108 (660)
Q Consensus 29 ~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~ 108 (660)
.+|+||.|+++++++.+. +|++||||+++.+. +.+++.+.|+ ++.+.+|++++++|+.+.++++++.+++.++
T Consensus 2 y~V~~G~g~l~~l~~~~~----~r~lIVtD~~v~~l-~~~~l~~~L~--~~~~~~~~~~e~~k~l~~v~~~~~~~~~~~~ 74 (346)
T cd08196 2 YKVVFGDSLLDSSTIQPL----ENDVFIVDANVAEL-YRDRLDLPLD--AAPVIAIDATEENKSLEAVSSVIESLRQNGA 74 (346)
T ss_pred eEEEEcCChHHHHHHhhC----CeEEEEECccHHHH-HHHHHHHHhc--CCeEEEeCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 478999999999876542 79999999999887 7789999887 5678889999999999999999999999999
Q ss_pred ---CEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC--CcCccccCceEEeeCCCC
Q psy2427 109 ---DAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS--GTGSETTGVSIFDYEPLK 183 (660)
Q Consensus 109 ---D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~--gtgse~s~~avi~~~~~~ 183 (660)
|+||||||||++|+||++|.++.++ +|++.||||. ..+|.+++.+.++.. +
T Consensus 75 ~r~d~iIaiGGGsv~D~ak~vA~~~~rg----------------------i~~i~iPTTlla~vds~ig~k~~vn~~--~ 130 (346)
T cd08196 75 RRNTHLVAIGGGIIQDVTTFVASIYMRG----------------------VSWSFVPTTLLAQVDSCIGSKSSINVG--P 130 (346)
T ss_pred CCCcEEEEECChHHHHHHHHHHHHHHcC----------------------CCeEEecccHHHhhhccccccceecCC--C
Confidence 8999999999999999999999876 8999999997 447778888877643 2
Q ss_pred ceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHH---HhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q psy2427 184 AKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALE---SFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260 (660)
Q Consensus 184 ~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE---~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la 260 (660)
.| .+.+++..|..||+||+++.++|.+++++|.+|++++++= .++....... + .. ..++ + ..
T Consensus 131 ~K-n~ig~f~~P~~viiD~~~l~tlp~~~~~~G~aEiiK~~~i~~~~~f~~l~~~~------~----~~-~~~~--~-~~ 195 (346)
T cd08196 131 YK-NLVGNFYPPREIYIDPPFLSTLDEKEIYSGLGEALKICYARGPDVFARYLQLY------P----VL-FTEH--E-AL 195 (346)
T ss_pred CC-cccccCCCCCEEEEchHHhccCCHHHHHhhHHHHHHHHHhCCHHHHHHHHhhh------h----hh-cCCH--H-HH
Confidence 33 5666777899999999999999999999999999998861 1111000000 0 00 0000 0 01
Q ss_pred HHHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHH
Q psy2427 261 RFALQTIRQ-YFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 339 (660)
Q Consensus 261 ~~ai~~i~~-~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~ava 339 (660)
++.++...+ ....+.+|+.+...|.- +.++|.++|+|+.... +.++||++||
T Consensus 196 ~~~i~~s~~~K~~vv~~D~~e~g~R~~----------------Ln~GHt~gHAlE~~~~-----------~~~~HGeaVa 248 (346)
T cd08196 196 SRIIRSSLAIKKWFIEIDEFDQGERLL----------------LNYGHTFGHALESATN-----------FAIPHGIAVG 248 (346)
T ss_pred HHHHHHHHHHHHHHhhhCccccCccHH----------------HhccchhhHHHHccCC-----------CCCchHHHHH
Confidence 111111111 11112235555444442 2357888888876532 2399999999
Q ss_pred hhHHHHHHhhhc------CCchhhhhHhhhhccc
Q psy2427 340 MSAPAVFNFTAA------SSPERHIEAAELLGAD 367 (660)
Q Consensus 340 i~l~~~l~~~~~------~~~er~~~la~~lg~~ 367 (660)
++|.....+... ...+++.++.+.++.+
T Consensus 249 iGm~~~~~ls~~~g~~~~~~~~~i~~~l~~~~lp 282 (346)
T cd08196 249 LGMLMANTIAVLAGGTMGLHSQELHEVLKKILLP 282 (346)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Confidence 999998887532 3456677777777754
No 56
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=99.96 E-value=2.9e-28 Score=252.53 Aligned_cols=274 Identities=19% Similarity=0.195 Sum_probs=203.2
Q ss_pred ceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeE--EEEeCcccCCCHHHHHHHHHHhHhc
Q psy2427 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKF--ELFDKVRVEPTGDSFLEATKFVRSV 106 (660)
Q Consensus 29 ~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~--~~~~~~~~~p~~~~v~~~~~~~~~~ 106 (660)
..|++|.|.+++. ........+|++||+|+.+... +.+++...|+..|+.+ .++.+.+..++.+.+.++.+.+.+.
T Consensus 13 y~I~ig~gl~~~~-~l~~~~~~~k~~ivtd~~v~~~-y~~~~~~~l~~~g~~v~~~~lp~GE~~Ksl~~~~~i~~~ll~~ 90 (360)
T COG0337 13 YPIYIGSGLLSDA-ELAELLAGRKVAIVTDETVAPL-YLEKLLATLEAAGVEVDSIVLPDGEEYKSLETLEKIYDALLEA 90 (360)
T ss_pred eeEEEeCCcccch-hhhhhccCCeEEEEECchhHHH-HHHHHHHHHHhcCCeeeEEEeCCCcccccHHHHHHHHHHHHHc
Confidence 4589999999954 3233334469999999999887 7799999999999987 5778899999999999999999998
Q ss_pred CC---CEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC--CcCccccCceEEeeCC
Q psy2427 107 QC---DAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS--GTGSETTGVSIFDYEP 181 (660)
Q Consensus 107 ~~---D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~--gtgse~s~~avi~~~~ 181 (660)
++ |.|||+|||.+.|+|+|+|.++.|| +++|+||||. -.+|.+.+...++.+.
T Consensus 91 ~~~R~s~iialGGGvigDlaGF~Aaty~RG----------------------v~fiqiPTTLLAqVDSSVGGKtgIN~~~ 148 (360)
T COG0337 91 GLDRKSTLIALGGGVIGDLAGFAAATYMRG----------------------VRFIQIPTTLLAQVDSSVGGKTGINHPL 148 (360)
T ss_pred CCCCCcEEEEECChHHHHHHHHHHHHHHcC----------------------CCeEeccchHHHHhhcccccccccCCCC
Confidence 88 6999999999999999999999988 9999999995 3499999999998777
Q ss_pred CCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHH---HhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q psy2427 182 LKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALE---SFTALPYTERTPCPTDPLLRPAYQGQNPVSDV 258 (660)
Q Consensus 182 ~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE---~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 258 (660)
+++..+.+++ |++||+||+++.|||+|.+++|..++++|++= .++.+.... . .......+ .
T Consensus 149 gKNmIGaF~q---P~aVi~D~~~L~TLp~re~~~G~AEvIK~g~I~D~~~f~~Le~~-~---------~~l~~~~~---~ 212 (360)
T COG0337 149 GKNLIGAFYQ---PKAVLIDTDFLKTLPPRELRAGMAEVIKYGLIADPEFFDWLEEN-L---------DALLALDP---A 212 (360)
T ss_pred CcceeecccC---CcEEEEchHHhccCCHHHHHHhHHHHHHHhhhcCHHHHHHHHHH-H---------HHHHhcch---H
Confidence 6666666654 99999999999999999999999999999862 122210000 0 00000000 0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHH
Q psy2427 259 WARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSV 338 (660)
Q Consensus 259 la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~av 338 (660)
+.+...+.+.-....+.+|+.+...|. -++++|+++|+|+...+ |+ .++||++|
T Consensus 213 l~~~I~rs~~~Ka~VV~~De~E~G~R~----------------~LN~GHT~GHAiE~~~~------y~----~~~HGeAV 266 (360)
T COG0337 213 LEELIARSCQIKAEVVAQDEKESGLRA----------------ILNLGHTFGHAIEALTG------YG----KWLHGEAV 266 (360)
T ss_pred HHHHHHHHHHHhhHHhhcCccchhhHH----------------HHhcchHHHHHHHHHhC------CC----ccchHHHH
Confidence 222222333333344556776666665 24556666666665432 11 28999999
Q ss_pred HhhHHHHHHhhhc------CCchhhhhHhhhhcccc
Q psy2427 339 VMSAPAVFNFTAA------SSPERHIEAAELLGADV 368 (660)
Q Consensus 339 ai~l~~~l~~~~~------~~~er~~~la~~lg~~~ 368 (660)
|++|....++... ...+|+..+.+.+|+|.
T Consensus 267 aiGmv~aa~ls~~lG~~~~~~~~r~~~~L~~~gLP~ 302 (360)
T COG0337 267 AIGMVMAARLSERLGLLDKADAERILNLLKRYGLPT 302 (360)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCc
Confidence 9999988876643 23578888888888754
No 57
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.96 E-value=1.1e-27 Score=269.43 Aligned_cols=284 Identities=14% Similarity=0.088 Sum_probs=190.9
Q ss_pred eccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEE--EeCcccCCCHHHHHHHHHHh
Q psy2427 26 MASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFEL--FDKVRVEPTGDSFLEATKFV 103 (660)
Q Consensus 26 ~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~--~~~~~~~p~~~~v~~~~~~~ 103 (660)
..|.+|+||.|+++++++++.++| +|+++|++..+.. +.+++.+.|++.|+.+.. +.+.+.+.+.+.++++++.+
T Consensus 186 ~~p~~v~iG~g~l~~l~~~l~~~g-~k~~iV~d~~v~~--~~~~l~~~L~~~g~~v~~~v~p~~E~~ksl~~v~~~~~~l 262 (542)
T PRK14021 186 IEPYDVRIGEGAMNHLPQVLGPKP-VKVALIHTQPVQR--HSDRARTLLRQGGYEVSDIVIPDAEAGKTIEVANGIWQRL 262 (542)
T ss_pred CCCceEEEcCChHHHHHHHHHhcC-CeEEEEECccHHH--HHHHHHHHHHhCCCceEEEEeCCCcccCCHHHHHHHHHHH
Confidence 346899999999999999999887 6778888876643 568999999998886432 22333334789999999999
Q ss_pred Hhc---CCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCC--CCcCccccCceEEe
Q psy2427 104 RSV---QCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTT--SGTGSETTGVSIFD 178 (660)
Q Consensus 104 ~~~---~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt--~gtgse~s~~avi~ 178 (660)
++. ++|+||||||||++|+||++|..+.++ +|+|.|||| ++++|.+++.+.++
T Consensus 263 ~~~~~~r~D~IIAIGGGsv~D~AKfvA~~y~rG----------------------i~~i~vPTTllA~vDss~ggkt~in 320 (542)
T PRK14021 263 GNEGFTRSDAIVGLGGGAATDLAGFVAATWMRG----------------------IRYVNCPTSLLAMVDASTGGKTGIN 320 (542)
T ss_pred HhcCCCCCcEEEEEcChHHHHHHHHHHHHHHcC----------------------CCEEEeCChHHhhhccccCCceEEE
Confidence 887 589999999999999999999998876 999999997 67899999999998
Q ss_pred eCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHH---hhcCCCCCCCCCCCCCCCCCCCCCCCHH
Q psy2427 179 YEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALES---FTALPYTERTPCPTDPLLRPAYQGQNPV 255 (660)
Q Consensus 179 ~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~---~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (660)
.+..++..+.++ .|..|++|++++.++|.+++++|++|++++++=. ++....... ........... .....
T Consensus 321 ~~~gkn~ig~f~---~P~~V~iD~~~l~tlP~r~~~aG~gE~iK~~~i~d~~l~~~l~~~~-~~~~~~~~~~~--~~~~~ 394 (542)
T PRK14021 321 TPQGKNLVGSFY---TPAGVLADTKTLATLPNDIFIEGLGEVAKSGFIRDPEILRILEDHA-AELRAFDGSTF--LGSPL 394 (542)
T ss_pred CCCCceeEeeec---CCCEEEEeHHHHhhCCHHHHHhhHHHHHHHHhhCCHHHHHHHHhhH-HHHhhhccccc--cccch
Confidence 765544334443 6999999999999999999999999999998521 111000000 00000000000 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCch
Q psy2427 256 SDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 335 (660)
Q Consensus 256 s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG 335 (660)
.+.+.....+.+.-....+..|+.+...|. -++++|+++|+|+...+ +.++||
T Consensus 395 ~~~~~~ii~~si~~K~~vv~~D~~e~g~r~----------------~Ln~GHT~gHaiE~~~~-----------~~~~HG 447 (542)
T PRK14021 395 EDVVAELIERTVKVKAYHVSSDLKEAGLRE----------------FLNYGHTLGHAIEKLEH-----------FRWRHG 447 (542)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccchH----------------HHhccchhhHHHHcccC-----------CCCChH
Confidence 001111111111112222223444444443 14566777777776432 239999
Q ss_pred hHHHhhHHHHHHhhhc------CCchhhhhHhhhhccc
Q psy2427 336 LSVVMSAPAVFNFTAA------SSPERHIEAAELLGAD 367 (660)
Q Consensus 336 ~avai~l~~~l~~~~~------~~~er~~~la~~lg~~ 367 (660)
++||++|....++... ...+++.++.+.+|+|
T Consensus 448 eaVa~Gm~~~~~ls~~~g~~~~~~~~~i~~ll~~~~lp 485 (542)
T PRK14021 448 NAVAVGMVYAAELAHLLGYIDQDLVDYHRSLLASLGLP 485 (542)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Confidence 9999999998776532 2356777777777764
No 58
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.94 E-value=5.8e-26 Score=251.26 Aligned_cols=240 Identities=18% Similarity=0.173 Sum_probs=185.8
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
+..|++|.|.+... + .|++||+|.++.+. +.+ .|.. ...+|++.+.+++.+.+.++++.+.+++
T Consensus 171 ~~~v~~~~~~~~~~-----~---~~~~ii~d~~v~~l-y~~----~l~~---~~~~~~~ge~~k~l~~v~~~~~~l~~~~ 234 (488)
T PRK13951 171 PHLVKIILGGFKRV-----R---NEELVFTTERVEKI-YGR----YLPE---NRLLFPDGEEVKTLEHVSRAYYELVRMD 234 (488)
T ss_pred ceeEEEeccccccC-----C---CeEEEEECCcHHHH-HHH----hhcc---cEEEecCCCCCCCHHHHHHHHHHHHHcC
Confidence 45778888887765 1 48899999998765 223 3332 4567899999999999999999999999
Q ss_pred C---CEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC--CcCccccCceEEeeCCC
Q psy2427 108 C---DAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS--GTGSETTGVSIFDYEPL 182 (660)
Q Consensus 108 ~---D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~--gtgse~s~~avi~~~~~ 182 (660)
+ |+|||||||+++|+||++|..|.|| +|+|.||||. ..+|.+++...++....
T Consensus 235 ~~R~d~viaiGGG~v~D~agf~A~~y~RG----------------------i~~i~vPTTlla~vDssiggK~~vn~~~~ 292 (488)
T PRK13951 235 FPRGKTIAGVGGGALTDFTGFVASTFKRG----------------------VGLSFYPTTLLAQVDASVGGKNAIDFAGV 292 (488)
T ss_pred CCCCCeEEEECChHHHHHHHHHHHHHhcC----------------------CCeEecCccHHHHHhcCCCCCeeeeCCCC
Confidence 9 9999999999999999999999987 9999999995 45899999888877655
Q ss_pred CceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHH---HhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q psy2427 183 KAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALE---SFTALPYTERTPCPTDPLLRPAYQGQNPVSDVW 259 (660)
Q Consensus 183 ~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE---~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~l 259 (660)
++-.+.+ .+|.+||+||+++.|+|++++++|.+|+++|++- .++... .. . .-.+...+.+
T Consensus 293 KNliG~f---~~P~~viiD~~~l~TLp~~~~~~G~aE~iK~~~~~~~~~~~~~--~~-~-----------~~~~~~~~~~ 355 (488)
T PRK13951 293 KNVVGTF---RMPDYVIIDPTVTLSMDEGRFEEGVVEAFKMTILSGRGVELFD--EP-E-----------KIEKRNLRVL 355 (488)
T ss_pred CceeecC---CCCCEEEEchHHhcCCCHHHHHhhHHHHHHHHHhcChhHHhhh--Ch-h-----------hhhcccHHHH
Confidence 5555554 4599999999999999999999999999999981 111100 00 0 0011223445
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHH
Q psy2427 260 ARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 339 (660)
Q Consensus 260 a~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~ava 339 (660)
.+...+.+....+.+.+|+.|..+|..+- ++|+++|+|+..++ ++||++||
T Consensus 356 ~~~i~~si~~k~~vv~~D~~e~~~R~~LN----------------~GHTigHalE~~~~-------------i~HG~AVa 406 (488)
T PRK13951 356 SEMVKISVEEKARIVMEDPYDMGLRHALN----------------LGHTLGHVYEMLEG-------------VPHGIAVA 406 (488)
T ss_pred HHHHHHHHHHHHHHHccCCcchhHHHHHh----------------ccchHHHHHHhccC-------------CccHHHHH
Confidence 55555566667777788999999988322 45888888887542 99999999
Q ss_pred hhHHHHHHhhhc
Q psy2427 340 MSAPAVFNFTAA 351 (660)
Q Consensus 340 i~l~~~l~~~~~ 351 (660)
++|.....+...
T Consensus 407 ~gm~~~~~~s~~ 418 (488)
T PRK13951 407 WGIEKETMYLYR 418 (488)
T ss_pred HHHHHHHHHHHH
Confidence 999999876543
No 59
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=99.93 E-value=1.2e-25 Score=239.53 Aligned_cols=221 Identities=15% Similarity=0.060 Sum_probs=175.9
Q ss_pred ccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHH---hcC
Q psy2427 371 VKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESF---TAL 447 (660)
Q Consensus 371 ~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~---~~~ 447 (660)
..|+|+||||++||||+|+.+++++++.+.+. . .. .|+.+|+||+++.++|++++++|++|+|+|++|.| +..
T Consensus 99 ~~p~i~vPTt~~tgs~~s~~a~i~~~~~k~~~-~--~~-~P~~vi~D~~~l~tlP~~~~~aG~~Dalak~~~~~d~~~~~ 174 (331)
T cd08174 99 GIPLSVPTTNLNDDGIASPVAVLTDEGGKRSS-L--AA-IPIGVVIDLDVIRSAPRRLILAGIGDLISNITALADWELAH 174 (331)
T ss_pred CCCEEEecCccccCccccCceEEEeCCCeeee-c--CC-CCcEEEEcHHHHHhCCHHHHHhhHHHHHHhcchHHHHHHHH
Confidence 47999999999999999999999987544433 2 23 89999999999999999999999999999999876 221
Q ss_pred CCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhHhhhcccc-----hhh
Q psy2427 448 PYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGV-----HLC 522 (660)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as~~ag~~~~~~g~-----~~~ 522 (660)
.. .. ...+++++.+++.+++.+.+++++ ..|.+.|+.++++++++|++++++|. +..
T Consensus 175 ~~-~~-------------~~~~~~~~~~a~~~~~~l~~~~~~----~~d~~~~~~l~~a~~laG~a~~~~g~~~~~~~~~ 236 (331)
T cd08174 175 ER-GG-------------EPVDGLAALLSRAAAEAVLRHPGS----ITDPEFLKTLAEGLVLSGIAMEIAGNSRPASGAE 236 (331)
T ss_pred Hh-cC-------------CCccHHHHHHHHHHHHHHHhcccc----cCCHHHHHHHHHHHHHHHHHHhccCCCCCCcHHH
Confidence 00 00 024678999999999999999887 36778999999999999999999986 689
Q ss_pred hhhhccccCCccccCCCCCCCCCCCCCcccc--cccchHHHHHHhccCCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH
Q psy2427 523 HGLSYPISGNVKTFHPAGYSDDHPIIPHGLS--VVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTV 600 (660)
Q Consensus 523 H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~--~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~~~~~~~~~~~~~l 600 (660)
|+|+|.|+..+. .+++||+. +|++++.+++.. ..+++
T Consensus 237 H~i~h~l~~~~~-----------~~~~HG~~Va~g~~~~~~l~~~------------------------------~~~~i 275 (331)
T cd08174 237 HLISHALDKLAP-----------GPALHGEQVGLATYFMSHLRGH------------------------------HTERI 275 (331)
T ss_pred HHHHHHHHhcCC-----------CccccHHHHHHHHHHHHHHcCC------------------------------cHHHH
Confidence 999999998631 15899984 455555554311 03578
Q ss_pred HHHHHHcCCCCcccccCCCCCcHHHHHHhhcc--CCCCCCCCCccCCHHHHHHHHH
Q psy2427 601 RGYMDQMKIENGLKVLGYTSADIPALVTGTLP--QHRITKLAPREQSEEDLANLFE 654 (660)
Q Consensus 601 ~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~--~~~~~~~~P~~~t~e~i~~il~ 654 (660)
++|++++|+|++++++|++.+++.++++.+.. .+++.-.+-..+|+|..++.|+
T Consensus 276 ~~~l~~~glp~~~~~~g~~~~~~~~~~~~~~k~~~~~~~~l~~~~~~~~~~~~~~~ 331 (331)
T cd08174 276 QKLLTLTGFFLYVKELGLDKEEFLEAVQLAPSTRPGRYTILEHLGLSADELRDAYK 331 (331)
T ss_pred HHHHHHcCCCCCHHHcCCCHHHHHHHHHhccccCCCceEeeCCCCCCHHHHHHhhC
Confidence 89999999999999999999999998888753 2344444557899999888774
No 60
>PF01761 DHQ_synthase: 3-dehydroquinate synthase; PDB: 3OKF_A 1NVA_B 1NUA_A 1NVE_D 1NVB_B 1SG6_A 1NR5_A 1NRX_B 1NVD_A 1NVF_C ....
Probab=99.86 E-value=6.9e-22 Score=200.80 Aligned_cols=218 Identities=20% Similarity=0.187 Sum_probs=147.8
Q ss_pred EEeCcccCCCHHHHHHHHHHhHhcCC---CEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEE
Q psy2427 83 LFDKVRVEPTGDSFLEATKFVRSVQC---DAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLI 159 (660)
Q Consensus 83 ~~~~~~~~p~~~~v~~~~~~~~~~~~---D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i 159 (660)
++...|..++.+.+.++.+.+.+.++ |.|||||||.+.|++.++|..+.|| +|+|
T Consensus 2 ~ip~GE~~Ksl~~~~~i~~~l~~~~~~R~~~iiaiGGGvv~Dl~GFaAs~y~RG----------------------i~~i 59 (260)
T PF01761_consen 2 VIPAGEESKSLETVEKIYDALLEAGLDRDDLIIAIGGGVVGDLAGFAASTYMRG----------------------IPFI 59 (260)
T ss_dssp EE-SSGGGSSHHHHHHHHHHHHHTT--TTEEEEEEESHHHHHHHHHHHHHBTT------------------------EEE
T ss_pred CcCCCcccCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHHHccC----------------------CceE
Confidence 46788999999999999999998888 5999999999999999999999987 9999
Q ss_pred EEcCCC--CcCccccCceEEeeCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHH---hhcCCCC
Q psy2427 160 AIPTTS--GTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALES---FTALPYT 234 (660)
Q Consensus 160 ~IPTt~--gtgse~s~~avi~~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~---~~s~~~~ 234 (660)
.||||. ..+|.+++...++....++-.+.+++ |..|++||+++.|||++.+.+|..+++++++-. ++....
T Consensus 60 ~vPTTLLa~vDssiGgK~~vN~~~~KN~iG~f~~---P~~V~iD~~~l~tL~~~e~~~G~aEiiK~a~i~d~~lf~~l~- 135 (260)
T PF01761_consen 60 QVPTTLLAQVDSSIGGKTGVNFPGGKNLIGTFYQ---PEAVLIDPSFLKTLPPREIRSGLAEIIKYALIADPELFELLE- 135 (260)
T ss_dssp EEE-SHHHHHTTTSSSEEEEEETTEEEEEEEE------SEEEEEGGGGGGS-HHHHHHHHHHHHHHHHHTCHHHHHHHH-
T ss_pred eccccHHHHHhcccCCCeeeeCCCCCCcccccCC---CceeEEcHHHHhhccHHHHHhCHHHHHHHHHHCCHHHHHHHH-
Confidence 999996 44899999988887766666777765 999999999999999999999999999999621 111000
Q ss_pred CCCCCCCCCCCCCCCCCCCHH-----HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccc
Q psy2427 235 ERTPCPTDPLLRPAYQGQNPV-----SDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGL 309 (660)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~-----s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i 309 (660)
.....+ .+.+.+...+.+......+.+|+.+...|. -+.++|++
T Consensus 136 ---------------~~~~~~~~~~~~~~l~~~i~~si~~K~~iv~~D~~E~g~R~----------------~Ln~GHT~ 184 (260)
T PF01761_consen 136 ---------------DHAKDLLEERDPDALEEIIKRSIKIKARIVEQDEFEKGLRR----------------ILNFGHTF 184 (260)
T ss_dssp ---------------HHHHHHHHTTTHCHHHHHHHHHHHHHHHHHHHCTTSSSGGG----------------GGGTTHHH
T ss_pred ---------------hhHHHHhcccCHHHHHHHHHHHHHHHHHHhccCcccccchH----------------Hhcccchh
Confidence 000000 001111111122222222334555444444 25566777
Q ss_pred cccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHHhhhc------CCchhhhhHhhhhcccc
Q psy2427 310 SYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAA------SSPERHIEAAELLGADV 368 (660)
Q Consensus 310 ~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~~~~~------~~~er~~~la~~lg~~~ 368 (660)
+|+|+...+ +.++||++||++|....++... ...+++.++.+.+|.+.
T Consensus 185 gHAlE~~~~-----------~~i~HGeAVa~Gm~~~a~ls~~~g~~~~~~~~~i~~ll~~~glp~ 238 (260)
T PF01761_consen 185 GHALESLSG-----------YKISHGEAVAIGMVFAARLSVRLGLLDEDDVERIEELLEKLGLPT 238 (260)
T ss_dssp HHHHHHHCT-----------TTS-HHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHhcC-----------CCCchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC
Confidence 777765432 2499999999999988776643 34567777777777653
No 61
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=99.86 E-value=1.9e-21 Score=206.87 Aligned_cols=199 Identities=16% Similarity=0.022 Sum_probs=157.0
Q ss_pred ccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHH---HHHHHhcC
Q psy2427 371 VKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCH---ALESFTAL 447 (660)
Q Consensus 371 ~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h---~~E~~~~~ 447 (660)
..|+|+||||++|+++.++.+.+..+ ++|.. .....|+.+|+||+++.++|++++++|.+|+|+| ++|.|++.
T Consensus 104 gip~I~VPTT~~~~g~~s~v~~~~~~--~k~~~--~~~~~P~~viiDp~~l~tlP~~~~~ag~~D~l~k~~~~~d~~~~~ 179 (332)
T cd08549 104 GKPFISVPTAPSMDGYASSVASLIVN--GKKRS--VSAVYPEIIVGDIDIISQAPYEFITAGFGDVISNYTALADWYISS 179 (332)
T ss_pred CCCEEEeCCCcccCcccCCceEEeeC--CceEe--ecCCCCcEEEEcHHHHHhCCHHHHHHhHHHHHHhhhHHHHHHHHH
Confidence 36999999999887666666655543 33443 3678899999999999999999999999999987 99999874
Q ss_pred CCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhHhhhcccc-----h
Q psy2427 448 PYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVY--NQDDLEARSHMHLASAMAGVGFGNAGV-----H 520 (660)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~--~~~~~~ar~~~~~as~~ag~~~~~~g~-----~ 520 (660)
. ...+++++..+ ..++.+.+.+.+.+. ++.|.++|+.|++|++++|+++.|.|+ +
T Consensus 180 ~-----------------~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~d~~~~~~l~~a~~~~G~~~~n~G~s~~~s~ 241 (332)
T cd08549 180 V-----------------ITGETYSDDIA-AMVKESINKVIDASTGILGRDEKSIKELVEALIINGIAMLIAGNSRPASG 241 (332)
T ss_pred H-----------------hcCcccCHHHH-HHHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHhhHhheecCCCCCcch
Confidence 1 02356777666 334555555555555 789999999999999999999999885 8
Q ss_pred hhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH
Q psy2427 521 LCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTV 600 (660)
Q Consensus 521 ~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~~~~~~~~~~~~~l 600 (660)
..|.|+|.|+..++ .+++||++||+.++..++...+ ..+++
T Consensus 242 ~~Hti~Hale~~~~-----------~~~~HGeaVaigm~~~~~l~~~----------------------------~~~~i 282 (332)
T cd08549 242 AEHHLSHALDMREP-----------EPHLHGTQVGVTTIIISEIHHY----------------------------TLDDI 282 (332)
T ss_pred HHHHHHHHHHHcCC-----------CCcccHHHHHHHHHHHHHHhcc----------------------------cHHHH
Confidence 89999999998641 2588999999988877765431 15789
Q ss_pred HHHHHHcCCCCcccccCCCCCcHHHHHHhh
Q psy2427 601 RGYMDQMKIENGLKVLGYTSADIPALVTGT 630 (660)
Q Consensus 601 ~~l~~~lglp~~L~elGi~~~~i~~ia~~a 630 (660)
+++++++|+|++++++|++.+++-+..+.+
T Consensus 283 ~~ll~~~glp~~~~~~~~~~~~~~~~~~~d 312 (332)
T cd08549 283 KKFLSKKGSLNRDLNLIGVSEVLLYAMLNA 312 (332)
T ss_pred HHHHHHcCCCCCHHHcCCCHHHHHHHHHHh
Confidence 999999999999999999877776666555
No 62
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=99.83 E-value=4.5e-20 Score=197.75 Aligned_cols=225 Identities=14% Similarity=0.043 Sum_probs=169.7
Q ss_pred ccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHH--H--hc
Q psy2427 371 VKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALES--F--TA 446 (660)
Q Consensus 371 ~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~--~--~~ 446 (660)
..|+|+||||++||||+++.++++.+. .|... ....|+.+|+||+++.++|++++++|++|+|+|+.+. . +.
T Consensus 111 gip~I~IPTT~~tds~~s~~a~i~~~~--~~~~~--~~~~P~~vivD~~~l~tlP~~~~~sg~~d~l~k~~~~~d~~~~~ 186 (350)
T PRK00843 111 GIPFISVPTAASHDGIASPRASIKGGG--KPVSV--KAKPPLAVIADTEIIAKAPYRLLAAGCGDIISNYTAVKDWRLAH 186 (350)
T ss_pred CCCEEEeCCCccCCcccCCceEEEeCC--ceeee--cCCCCeEEEEcHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999753 34333 3457999999999999999999999999999997642 1 22
Q ss_pred CCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhHhhhccc-----chh
Q psy2427 447 LPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAG-----VHL 521 (660)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as~~ag~~~~~~g-----~~~ 521 (660)
.. . . ...+++...+++.+++.+.++.+.+.+ . ....++.+..+...+|++++++| ++.
T Consensus 187 ~l-~-~-------------~~~~~~~~~~a~~~~~~i~~~~~~i~~-~-~~~~~~~v~~~~~~~G~~~~~~g~~r~~l~~ 249 (350)
T PRK00843 187 RL-R-G-------------EYYSEYAAALSLMTAKMLIENADIIKP-G-LEESARLVVKALISSGVAMSIAGSSRPASGS 249 (350)
T ss_pred hc-c-C-------------CCCCHHHHHHHHHHHHHHHHhHHHHhh-c-cHHHHHHHHHHHHHhHHHHhhcCCCCCcchH
Confidence 10 0 0 023567778999999999999887653 2 34455668888888999998766 568
Q ss_pred hhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Q psy2427 522 CHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVR 601 (660)
Q Consensus 522 ~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~~~~~~~~~~~~~l~ 601 (660)
.|.++|.|...+ .++++||+.+|+-+...+.+. . . ..++++
T Consensus 250 gHti~hale~~~-----------~~~~~HGeaVa~G~~~~~~l~----------------~-------~-----~~~~i~ 290 (350)
T PRK00843 250 EHLFSHALDRLA-----------PGPALHGEQCGVGTIIMMYLH----------------G-------G-----DWRKIR 290 (350)
T ss_pred HHHHHHHHHHcC-----------CCCCccHHHHHHHHHHHHHHc----------------C-------c-----cHHHHH
Confidence 899999998752 125899988886544333211 0 0 146788
Q ss_pred HHHHHcCCCCcccccCCCCCcHHHHH--HhhccCCCCCCCCCccCCHHHHHHHHHH
Q psy2427 602 GYMDQMKIENGLKVLGYTSADIPALV--TGTLPQHRITKLAPREQSEEDLANLFEN 655 (660)
Q Consensus 602 ~l~~~lglp~~L~elGi~~~~i~~ia--~~a~~~~~~~~~~P~~~t~e~i~~il~~ 655 (660)
++++++|+|++++++|++.+++.+.. ...++.++++-.+-..++++.++++++.
T Consensus 291 ~ll~~~glP~~l~~l~~~~~~~~~~~~~dk~~r~~r~t~l~~~~~~~~~~~~~~~~ 346 (350)
T PRK00843 291 DALKKIGAPTTAKELGIDDEYIIEALTIAHTIRPERYTILGDRGLTREAAEKAARI 346 (350)
T ss_pred HHHHHcCCCCCHHHcCCCHHHHHHHHHHHhhcCcccEEeecCCCCCHHHHHHHHHh
Confidence 99999999999999999988887664 3334556777777788999999988863
No 63
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=99.72 E-value=5.6e-18 Score=180.54 Aligned_cols=94 Identities=30% Similarity=0.398 Sum_probs=88.5
Q ss_pred cccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcCCC
Q psy2427 370 RVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPY 449 (660)
Q Consensus 370 ~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~ 449 (660)
+.+|+|+||||+|||||+|+++|++++ +.|.++.++.++|+.+|+||+++.++|+++++++|+|||+|++|+|++.
T Consensus 122 ~~~PlIaVPTTaGTGSE~t~~aVit~~--~~K~~i~~~~~~P~~aIvDp~l~~s~P~~~ta~tGiDal~HaiEay~s~-- 197 (347)
T cd08184 122 PAVYKIGIPTLSGTGAEASRTAVLMGP--ERKLGMNSDFTMFDQIILDPELTAGVPRDQYFYTGMDCYIHCIESLTGT-- 197 (347)
T ss_pred CCCcEEEEeCCCccccccCCcEEEEeC--CceeeeecCCcCCCEEEEChHhhcCCCHHHHHHHHHHHHHHHHHHHhcC--
Confidence 446899999999999999999999988 5788899999999999999999999999999999999999999999996
Q ss_pred CCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHH
Q psy2427 450 TERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIR 484 (660)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~ 484 (660)
..||++|.+|+++++++.
T Consensus 198 -----------------~~~p~td~~A~~ai~li~ 215 (347)
T cd08184 198 -----------------YRNEVSDAYAEKALELCR 215 (347)
T ss_pred -----------------CCCHHHHHHHHHHHHHHH
Confidence 789999999999999884
No 64
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=99.69 E-value=1.7e-17 Score=178.44 Aligned_cols=104 Identities=17% Similarity=0.107 Sum_probs=85.4
Q ss_pred cccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcCCCCC
Q psy2427 372 KKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTE 451 (660)
Q Consensus 372 ~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~ 451 (660)
+|+|+||||+|||||+|+++|+++++.+.|..+.++ ++|+.+|+||+++.++|++++++|++|||+|++|+|++..+
T Consensus 102 ~P~iaIPTTagTgse~t~~avi~~~~~~~k~~~~~~-~~P~~ai~Dp~l~~t~P~~~~a~~~~Dal~h~~E~~~s~~~-- 178 (351)
T cd08170 102 APVVIVPTIASTDAPTSALSVIYTDDGEFEEYLFLP-RNPDLVLVDTDVIAKAPVRFLVAGIGDALATYFEARACVRS-- 178 (351)
T ss_pred CCEEEeCCccccCcccccceEEECCCCceeeeeecc-CCCCEEEEChHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 699999999999999999999999887777776655 78999999999999999999999999999999999987521
Q ss_pred CCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhc
Q psy2427 452 RTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVY 492 (660)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~ 492 (660)
...+++++.....+..+..+.++.+.+
T Consensus 179 --------------~~~~~~~~~~~~~~~~~a~~~~~~l~~ 205 (351)
T cd08170 179 --------------GGPNMFGGKPTLAALALAKLCYETLLE 205 (351)
T ss_pred --------------cCccccCcchhHHHHHHHHHHHHHHHH
Confidence 134567766666666666555555543
No 65
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=99.69 E-value=2.1e-17 Score=177.30 Aligned_cols=122 Identities=17% Similarity=-0.007 Sum_probs=101.7
Q ss_pred cccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcCCCCC
Q psy2427 372 KKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTE 451 (660)
Q Consensus 372 ~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~ 451 (660)
+|+|+||||+|||||+|+++|+++++.+.|.... ...+|+.+|+||+++.++|++++++|++|||+||+|+|++...+
T Consensus 101 ~p~i~VPTT~gtgse~t~~avi~~~~~~~k~~~~-~~~~P~~vi~Dp~l~~tlP~~~~~sg~~Dal~h~~E~~~s~~~~- 178 (347)
T cd08172 101 VPVITVPTLAATCAAWTPLSVIYDEDGAFLRVEY-LKRAPELVLVDPDLIANSPVRYLVAGIGDTLAKWYEASAISRSL- 178 (347)
T ss_pred CCEEEecCccccCcccceeEEEEcCCCcEeeecc-ccCCCCEEEECHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 6999999999999999999999998766666543 55779999999999999999999999999999999999985210
Q ss_pred CCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHH----HHHhcCCCC---HHHHHHHHHHHHHH
Q psy2427 452 RTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYF----KRAVYNQDD---LEARSHMHLASAMA 510 (660)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l----~~~~~~~~~---~~ar~~~~~as~~a 510 (660)
..+|+++.+|.++++.+.+.+ +++++|++| .++|+++..+.++.
T Consensus 179 ---------------~~~~~~~~~a~~~~~~~~~~L~~~~~~a~~~~~~~~~~~a~~~~~r~~~~~ 229 (347)
T cd08172 179 ---------------DSLDLFVQLALQAAKLCRDLLLRDSEQALQDMAAGEVTPAFEDVVDTIIAL 229 (347)
T ss_pred ---------------ccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 157777777777776665555 689998887 79999999988753
No 66
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=99.68 E-value=5.4e-17 Score=172.05 Aligned_cols=101 Identities=43% Similarity=0.660 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCc
Q psy2427 255 VSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPH 334 (660)
Q Consensus 255 ~s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~H 334 (660)
++|.+|++++++|.++|++++.|+.|.++|++|++|++++|++|+|+++|+.|+|+|+|++.++ +||
T Consensus 209 ~tD~~A~~ai~li~~~L~~a~~~g~d~eARe~m~~aa~lAGmAF~na~lG~~HalaH~lG~~~~-------------~pH 275 (377)
T COG1454 209 ITDALALEAIKLIFEYLPRAVADGDDLEAREKMHLAATLAGMAFANAGLGLVHALAHPLGALFH-------------IPH 275 (377)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcchhHHHHHHhhcccccccc-------------Cch
Confidence 7899999999999999999999999999999999999999999999999999999999998764 999
Q ss_pred hhHHHhhHHHHHHhhhcCCchhhhhHhhhhcccc
Q psy2427 335 GLSVVMSAPAVFNFTAASSPERHIEAAELLGADV 368 (660)
Q Consensus 335 G~avai~l~~~l~~~~~~~~er~~~la~~lg~~~ 368 (660)
|.++|++||+|++||.+..++|+.++++.+|.+.
T Consensus 276 G~~nAillP~V~~fN~~~a~~r~a~iA~~lg~~~ 309 (377)
T COG1454 276 GLANAILLPYVIRFNAEAAPERYARIARALGLPG 309 (377)
T ss_pred HHHhhHhhHHHHHHhhhhhHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999863
No 67
>PRK15138 aldehyde reductase; Provisional
Probab=99.66 E-value=3.1e-16 Score=170.17 Aligned_cols=76 Identities=25% Similarity=0.423 Sum_probs=72.9
Q ss_pred ccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHH
Q psy2427 369 SRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESF 444 (660)
Q Consensus 369 ~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~ 444 (660)
.+.+|+|+||||+|||||+|+++|+++++.+.|..+.++.++|+++|+||+++.++|++++++|++|||+||+|+|
T Consensus 128 ~~~~P~iaVPTTaGTGSE~t~~avit~~~~~~K~~~~~~~~~P~~aivDP~l~~~~P~~~taatg~DAl~haiE~y 203 (387)
T PRK15138 128 KSAIPMGSVLTLPATGSESNAGAVISRKTTGDKQAFHSPHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQY 203 (387)
T ss_pred CCCCCEEEEecCCccccccCCCEEEEecCCCeeeeecCcchheeEEEECcHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 3457999999999999999999999999889999999999999999999999999999999999999999999998
No 68
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=99.66 E-value=6.5e-17 Score=173.59 Aligned_cols=104 Identities=13% Similarity=0.020 Sum_probs=90.4
Q ss_pred cccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcCCCCC
Q psy2427 372 KKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTE 451 (660)
Q Consensus 372 ~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~ 451 (660)
+|+|+||||+|||||+|..+|+++++.+.|..... ..+|+.+|+||+++.++|++++++|++|+|+||+|+|++..++
T Consensus 102 ~p~i~VPTtagtgse~t~~avi~~~~~~~k~~~~~-~~~P~~~i~Dp~l~~t~P~~~~a~g~~Dal~h~~E~~~s~~~~- 179 (349)
T cd08550 102 KPIVIVPTIASTCAASSNLSVIYSDDGEFARYDFQ-KRNPDLVLVDTEVIAQSPAEYLWSGIADALAKWYEAEAVIRGR- 179 (349)
T ss_pred CCEEEeCCccccCccccceEEEEcCCCceeeeeec-CCCCCEEEEChHHHHhCCHHHHHHhHHHHHHHHHHHHHHhhcc-
Confidence 69999999999999999999999987776766555 5789999999999999999999999999999999999985210
Q ss_pred CCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHh
Q psy2427 452 RTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAV 491 (660)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~ 491 (660)
| ..+|+++.+|.++++.+.+++.+-.
T Consensus 180 --~------------~~~~~~~~~a~~~~~~~~~~l~~~~ 205 (349)
T cd08550 180 --E------------MNGSLAPLMALAVAEACTPTLLEYG 205 (349)
T ss_pred --c------------ccccchhHHHHHHHHHHHHHHHHHH
Confidence 0 2358899999999999999997663
No 69
>KOG3857|consensus
Probab=99.66 E-value=2.5e-16 Score=158.62 Aligned_cols=125 Identities=62% Similarity=1.029 Sum_probs=120.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCC
Q psy2427 243 PLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHP 322 (660)
Q Consensus 243 ~~~~~~~~~~~~~s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~ 322 (660)
|..||.|+.+||++|.++.+++++|.+++.+++.||+|.++|.+|++|+.++|++|+|+|.+++|+++|+|++....|.+
T Consensus 263 p~~rp~yqgsNPIsD~wA~~al~li~kyl~rAv~~p~d~eARt~M~~As~~aG~gFgNAgvhlcHglsypisg~vk~~ka 342 (465)
T KOG3857|consen 263 PGVRPLYQGSNPISDAWALKALELINKYLVRAVKDPKDEEARTDMHYASYLAGMGFGNAGVHLCHGLSYPISGQVKSYKA 342 (465)
T ss_pred CccccccccCCchHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhhccccCcccccceeeccccccCccccccc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred CCCCCCCCCcCchhHHHhhHHHHHHhhhcCCchhhhhHhhhhccc
Q psy2427 323 AGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGAD 367 (660)
Q Consensus 323 ~~~~~~~~~~~HG~avai~l~~~l~~~~~~~~er~~~la~~lg~~ 367 (660)
-.|+.+|.-+|||.+|++++|++.+|+.+..|+|..+.++.+|.+
T Consensus 343 kdy~~dh~liPHGlsv~v~~pavfeft~~~cP~rhl~aaq~LGa~ 387 (465)
T KOG3857|consen 343 KDYYHDHNLIPHGLSVAVLLPAVFEFTAAACPDRHLEAAQRLGAI 387 (465)
T ss_pred cccccccccCCcchhhhhhhhhhhhhccccCchhHHHHHHHhhhH
Confidence 889889999999999999999999999999999999999999965
No 70
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=99.62 E-value=1.9e-15 Score=163.77 Aligned_cols=77 Identities=35% Similarity=0.523 Sum_probs=74.3
Q ss_pred cccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhc
Q psy2427 370 RVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTA 446 (660)
Q Consensus 370 ~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~ 446 (660)
+.+|+|+||||+|||||+|+++|+++++.+.|..+.++.++|+++|+||+++.++|++++++|++|||+||+|+|++
T Consensus 125 ~~~p~i~VPTtagTGsE~t~~avi~d~~~~~K~~~~~~~~~P~~~i~Dp~l~~t~P~~~~~a~g~Dal~h~iE~~~s 201 (374)
T cd08189 125 PLPPLFAIPTTAGTGSEVTIAAVISDPETHEKYAISDPRLLPKAAALDPRLTLGLPPHITAATGMDALTHAVEAYIG 201 (374)
T ss_pred CCCCEEEEECCCccccccCCeEEEEecCCCeeEEEeCCCccCCEEEEChHhhcCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 45799999999999999999999999988899999999999999999999999999999999999999999999998
No 71
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=99.61 E-value=1.3e-15 Score=165.29 Aligned_cols=78 Identities=29% Similarity=0.363 Sum_probs=75.1
Q ss_pred cccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcC
Q psy2427 370 RVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTAL 447 (660)
Q Consensus 370 ~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~ 447 (660)
..+|+|+||||+|||||+|+++|+++++.+.|..+.++.++|+.+|+||+++.++|++++++|++|||+||+|+|++.
T Consensus 126 ~~~P~i~IPTtagTgSe~t~~avi~~~~~~~K~~~~~~~~~P~~~ivDp~l~~~~P~~~~a~~~~Dal~h~~E~~~s~ 203 (377)
T cd08176 126 PAVPIVAINTTAGTASEVTINYVITDEERKVKMVIVDPNDIPIVAVNDPELMVGMPPGLTAATGMDALTHAIEAYVST 203 (377)
T ss_pred CCCCEEEeCCCCcchhccCCcEEEEEcCCCceeEEeCccccCCEEEEChHhhcCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 457999999999999999999999999889999999999999999999999999999999999999999999999993
No 72
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=99.61 E-value=8.5e-16 Score=164.64 Aligned_cols=102 Identities=14% Similarity=-0.034 Sum_probs=90.0
Q ss_pred cccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcCCCCC
Q psy2427 372 KKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTE 451 (660)
Q Consensus 372 ~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~ 451 (660)
+|+|+||||+|||||+|+++|+++++.+.|..+ +..++|+++|+||+++.++|++++++|++|||+||+|+|++...
T Consensus 103 ~p~i~VPTt~gtgse~t~~avi~~~~~~~K~~~-~~~~~P~~~i~Dp~l~~~~P~~~~~~g~~Dal~ha~E~y~s~~~-- 179 (345)
T cd08171 103 KPVFTFPTIASNCAAVTAVSVVYNDDGSFKEYY-FFKNPPVHCFIDTEIIAEAPEKYLWAGIGDTLAKYYEVTFSARG-- 179 (345)
T ss_pred CCEEEecCccccCccccceEEEEcCCCceeecc-cccCCCCEEEECHHHHHhCCHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 699999999999999999999999877777744 67889999999999999999999999999999999999999620
Q ss_pred CCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHh
Q psy2427 452 RTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAV 491 (660)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~ 491 (660)
...+.++.+|.++++.+.+.+.+..
T Consensus 180 ---------------~~~~~~~~~a~~~~~~~~~~l~~~l 204 (345)
T cd08171 180 ---------------EKLDHTNLLGVTISRMCSEPLLEYG 204 (345)
T ss_pred ---------------cccchhHHHHHHHHHHHHHHHHHHH
Confidence 1224899999999999999887764
No 73
>PRK10586 putative oxidoreductase; Provisional
Probab=99.60 E-value=1.5e-15 Score=162.95 Aligned_cols=131 Identities=19% Similarity=0.142 Sum_probs=102.6
Q ss_pred ccccccccccCCCCCcccceEEEeeCCCCc-eeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcCCC
Q psy2427 371 VKKADAVPTTSGTGSETTGVSIFDYEPLKA-KTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPY 449 (660)
Q Consensus 371 ~~~~i~vPTt~~tgse~t~~~v~~~~~~~~-k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~ 449 (660)
.+|+|+||||++||||+|+++|+++++... |..+..+ .|+.+|+||+++.++|++++++|++|+|+||+|+|++...
T Consensus 110 ~~p~i~vPT~a~t~s~~s~~avi~~~~~~~~~~~~~~~--~p~~~i~D~~l~~~~P~~~~~ag~~Dal~~~~Ea~~~~~~ 187 (362)
T PRK10586 110 GLPFVAIPTIAATCAAWTPLSVWYNDAGQALHFEIFDD--ANFLVLVEPRIILNAPQEYLLAGIGDTLAKWYEAVVLAPQ 187 (362)
T ss_pred CCCEEEEeCCccccccccCceEEECCCCCeeeecccCC--CCCEEEEChHHHhcCCHHHHHHHHHHHHHHHHHHHHcccc
Confidence 369999999999999999999999986432 3333333 3999999999999999999999999999999999987421
Q ss_pred CCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHH----HHHhcCCCC---HHHHHHHHHHHHHHhHhhhcccc
Q psy2427 450 TERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYF----KRAVYNQDD---LEARSHMHLASAMAGVGFGNAGV 519 (660)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l----~~~~~~~~~---~~ar~~~~~as~~ag~~~~~~g~ 519 (660)
...+++++.++.++.+++.+.+ .++++|..+ .++-+++..+.++.+-..+..|.
T Consensus 188 ----------------~~~~~~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vv~a~i~~~g~~s~~g~ 248 (362)
T PRK10586 188 ----------------PETLPLTVRLGINNALAIRDVLLNSSEQALADQQNGQLTQDFCDVVDAIIAGGGMVGGLGE 248 (362)
T ss_pred ----------------ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhhhccc
Confidence 1455677887777777666666 778776544 46778899999987766654443
No 74
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=99.57 E-value=5.8e-16 Score=167.50 Aligned_cols=78 Identities=36% Similarity=0.488 Sum_probs=72.7
Q ss_pred cccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcC
Q psy2427 370 RVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTAL 447 (660)
Q Consensus 370 ~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~ 447 (660)
+.+|.|+||||+|||||+|+++|+++++.+.|.++.++.++|+.+|+||+++.++|++++++|++|||+||+|+|++.
T Consensus 120 ~~~p~i~IPTt~gtGsE~t~~avi~d~~~~~k~~~~~~~~~P~~~i~Dp~l~~~lP~~~~~~~~~dal~haiE~~~s~ 197 (366)
T PF00465_consen 120 PALPLIAIPTTAGTGSEVTPYAVIYDEEGGRKLSIRSPKLYPDAAILDPELTATLPPRLTASGGLDALAHAIEAYLSP 197 (366)
T ss_dssp --SEEEEEESSSSSSGCCSSEEEEEETTTTEEEEEEEGGGS-SEEEEEGGGGTTS-HHHHHHHHHHHHHHHHHHHHST
T ss_pred CCCcEEEeeCCccccccccccccccccccceeccccCcccCcceeEecHHhhcCCCHHHHhhhHHHHHHHHHHHHhhc
Confidence 448999999999999999999999999999999999999999999999999999999999999999999999999996
No 75
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=99.56 E-value=8.1e-15 Score=158.82 Aligned_cols=78 Identities=37% Similarity=0.558 Sum_probs=75.0
Q ss_pred cccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcC
Q psy2427 370 RVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTAL 447 (660)
Q Consensus 370 ~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~ 447 (660)
+.+|.|+||||+|||||+|+++|+++++.+.|.++.++.++|+.+|+||+++.++|++++++|++|||+||+|+|++.
T Consensus 121 ~~~p~i~VPTt~gtgse~t~~avi~d~~~~~K~~~~~~~~~P~~~i~Dp~l~~~~P~~~~~a~~~Dal~h~~E~~~s~ 198 (370)
T cd08551 121 PALPLIAIPTTAGTGSEVTPFAVITDEETGEKYGIASPELLPDVAILDPELTYTLPPALTAATGMDALTHAIEAYVSR 198 (370)
T ss_pred CCCCEEEecCCCcchhhcCCeEEEEECCCCeeEEEeCCCccCCEEEEChHhhcCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 457999999999999999999999999889999999999999999999999999999999999999999999999993
No 76
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=99.54 E-value=3.3e-15 Score=161.89 Aligned_cols=75 Identities=31% Similarity=0.507 Sum_probs=72.1
Q ss_pred cccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHH
Q psy2427 370 RVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESF 444 (660)
Q Consensus 370 ~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~ 444 (660)
+.+|+|+||||+|||||+|+++|+++++.+.|..+.++.++|+++|+||+++.++|++++++|++|||+||+|+|
T Consensus 125 ~~~p~iaIPTtagTGSE~t~~avi~~~~~~~K~~~~~~~~~P~~ai~Dp~l~~~~P~~~~a~tg~Dal~ha~E~y 199 (375)
T cd08179 125 NKARFCAIPSTSGTATEVTAFSVITDYEKGIKYPLADFEITPDVAIVDPELTETMPPKLTAETGMDALTHAIEAY 199 (375)
T ss_pred CCCCEEEeCCCCchhHhhCCeEEEEeCCCCeEEEecCCcccCCEEEEChhhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999999999999889999999999999999999999999999999999999999999987
No 77
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=99.53 E-value=1.7e-14 Score=156.92 Aligned_cols=109 Identities=37% Similarity=0.623 Sum_probs=101.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCC
Q psy2427 246 RPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGY 325 (660)
Q Consensus 246 ~~~~~~~~~~s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~ 325 (660)
++.+...+|++|.+++++++++.++++++++|++|.++|++|++|++++|++++++|++++|+|+|+|++.++
T Consensus 208 ~~~~~~~~p~sd~~a~~a~~li~~~l~~a~~~~~~~~ar~~~~~as~laG~a~~~~~~g~~Hal~~~l~~~~~------- 280 (386)
T cd08191 208 DHVYSGKNALTDLFAREAIRLIGRSLPRAVRDGDDLEARTDMMLAALLAGLAFGTAGTAAVHALQYPVGALTH------- 280 (386)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhccchHHHHHhhhhhhcCcC-------
Confidence 3444567999999999999999999999999999999999999999999999999999999999999998653
Q ss_pred CCCCCCcCchhHHHhhHHHHHHhhhcCCchhhhhHhhhhccc
Q psy2427 326 SDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGAD 367 (660)
Q Consensus 326 ~~~~~~~~HG~avai~l~~~l~~~~~~~~er~~~la~~lg~~ 367 (660)
++||+++|+++|++++||.+..++|+.++++.++..
T Consensus 281 ------i~HG~~~aillp~v~~~n~~~~~~k~~~~a~~~~~~ 316 (386)
T cd08191 281 ------TSHGFGVAALLPYVMRFNLPARREEFAEIGRVLGVA 316 (386)
T ss_pred ------CChHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999988863
No 78
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=99.53 E-value=2.4e-14 Score=156.83 Aligned_cols=120 Identities=66% Similarity=1.169 Sum_probs=104.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCC
Q psy2427 248 AYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSD 327 (660)
Q Consensus 248 ~~~~~~~~s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~ 327 (660)
.+...+|++|.+++++++++.+++++++.|+.|.++|++|++|++++|++++++|++++|+|+|+|++.+++|....|.-
T Consensus 221 ~~~~~~p~sd~~a~~ai~li~~~l~~a~~~~~d~~AR~~~~~As~laG~a~~~~g~~~~Hai~~~l~~~~~~~~~~~~~~ 300 (414)
T cd08190 221 AYQGSNPISDIWSLQALRIVGKYLRRAVADPDDLEARSQMHLASTFAGIGFGNAGVHLCHGMSYPIAGLVKDYKAPDYPV 300 (414)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHhCcchhhhhHhccHhhcCcCccccccccc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999764321112222
Q ss_pred CCCCcCchhHHHhhHHHHHHhhhcCCchhhhhHhhhhccc
Q psy2427 328 DHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGAD 367 (660)
Q Consensus 328 ~~~~~~HG~avai~l~~~l~~~~~~~~er~~~la~~lg~~ 367 (660)
.|++++||+++++++|++++|+.+..++|+.++++.+|.+
T Consensus 301 ~~~~ipHG~~~ai~lp~vl~~n~~~~~~k~~~~a~~lg~~ 340 (414)
T cd08190 301 DHPLVPHGLSVVVTAPAVFRFTAPACPERHLEAAEILGAD 340 (414)
T ss_pred cCCCCChHHHHHHHHHHHHHhhhhhCHHHHHHHHHHhCCC
Confidence 2345999999999999999999999999999999988753
No 79
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=99.51 E-value=3.7e-14 Score=154.26 Aligned_cols=98 Identities=36% Similarity=0.517 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCch
Q psy2427 256 SDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 335 (660)
Q Consensus 256 s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG 335 (660)
+|.+++++++++.++++++++|++|.++|++|++|++++|++++++|++..|+|+|+|++.++ +|||
T Consensus 230 td~~a~~ai~li~~~l~~a~~~~~d~~AR~~m~~As~laG~a~~~~g~g~~Hal~h~lg~~~~-------------ipHG 296 (395)
T PRK15454 230 TDSLAIGAIAMIGKSLPKAVGYGHDLAARESMLLASCMAGMAFSSAGLGLCHAMAHQPGAALH-------------IPHG 296 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhcccchHHHhhhhhhccCCC-------------CCcH
Confidence 478999999999999999999999999999999999999999999999999999999998653 9999
Q ss_pred hHHHhhHHHHHHhhhcCCchhhhhHhhhhcc
Q psy2427 336 LSVVMSAPAVFNFTAASSPERHIEAAELLGA 366 (660)
Q Consensus 336 ~avai~l~~~l~~~~~~~~er~~~la~~lg~ 366 (660)
+++|+++|++++||.+..++|+.++++.++.
T Consensus 297 ~~~aillP~v~~~n~~~~~~k~~~la~~l~~ 327 (395)
T PRK15454 297 LANAMLLPTVMEFNRMVCRERFSQIGRALRT 327 (395)
T ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHHhCC
Confidence 9999999999999999999999999998874
No 80
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=99.50 E-value=3.9e-14 Score=151.32 Aligned_cols=98 Identities=27% Similarity=0.448 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCch
Q psy2427 256 SDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 335 (660)
Q Consensus 256 s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG 335 (660)
++.+++++++++.++++++++||+|.++|++|++|++++|++++++|+|++|+|+|+|++.++ ++||
T Consensus 180 s~~~a~~ai~~i~~~l~~~~~~~~~~~ar~~~~~as~~ag~a~~~~~~g~~H~l~h~l~~~~~-------------~~HG 246 (337)
T cd08177 180 VDLLAEEGIRALAEALPRIKADPDDLDARLDALYGAWLCGTCLGSVGMGLSHKLGHVLGGTFG-------------LPHA 246 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccccHHHHHHhhCccccCcC-------------CCcH
Confidence 578999999999999999999999999999999999999999999999999999999998754 9999
Q ss_pred hHHHhhHHHHHHhhhcCCchhhhhHhhhhcc
Q psy2427 336 LSVVMSAPAVFNFTAASSPERHIEAAELLGA 366 (660)
Q Consensus 336 ~avai~l~~~l~~~~~~~~er~~~la~~lg~ 366 (660)
+++|+++|++++|+.+..++++.++++.++.
T Consensus 247 ~~~ai~lp~vl~~~~~~~~~~~~~~a~~l~~ 277 (337)
T cd08177 247 ETSCIVLPHVLAFNAPAAPEALARLARALGL 277 (337)
T ss_pred HHHHHHHHHHHHhcCcCCHHHHHHHHHHhCc
Confidence 9999999999999999999999999998875
No 81
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=99.50 E-value=8.4e-15 Score=159.15 Aligned_cols=75 Identities=32% Similarity=0.517 Sum_probs=72.2
Q ss_pred cccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHH
Q psy2427 370 RVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESF 444 (660)
Q Consensus 370 ~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~ 444 (660)
..+|+|+||||+|||||+|+++|+++++.+.|..+.++.++|+.+|+||+++.++|++++++|++|||+|++|+|
T Consensus 127 ~~~P~iaIPTTagTGsE~t~~avi~~~~~~~K~~~~~~~~~P~~~i~Dp~l~~~~P~~~~aatg~Dal~h~~E~~ 201 (382)
T cd08187 127 KALPVGTVLTLAATGSEMNGGAVITNEETKEKLGFGSPLLRPKFSILDPELTYTLPKYQTANGIVDIFSHVMEQY 201 (382)
T ss_pred CCCCEEEEeCCCchhhccCCCEEEeccccCccccccCCCcCceEEEEChHHhccCCHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999989999999999999999999999999999999999999999999976
No 82
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=99.49 E-value=4.3e-14 Score=153.36 Aligned_cols=99 Identities=26% Similarity=0.409 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCc
Q psy2427 255 VSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPH 334 (660)
Q Consensus 255 ~s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~H 334 (660)
++|.+++++++++.++++++++|++|.++|++|++|++++|++++++|+++.|+|+|+|++.++ +||
T Consensus 211 ~sd~~a~~ai~~i~~~l~~a~~~~~d~~aR~~m~~as~laG~a~~~~g~g~~Hal~h~lg~~~~-------------ipH 277 (383)
T PRK09860 211 ITDACALKAVTMIAENLPLAVEDGSNAKAREAMAYAQFLAGMAFNNASLGYVHAMAHQLGGFYN-------------LPH 277 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHccccHHHHHHHhhHHhhCcC-------------CCc
Confidence 6889999999999999999999999999999999999999999999999999999999998653 999
Q ss_pred hhHHHhhHHHHHHhhhcCCchhhhhHhhhhcc
Q psy2427 335 GLSVVMSAPAVFNFTAASSPERHIEAAELLGA 366 (660)
Q Consensus 335 G~avai~l~~~l~~~~~~~~er~~~la~~lg~ 366 (660)
|.++|+++|++++|+.+..++|+.++++.+|.
T Consensus 278 G~~~ai~lP~vl~~n~~~~~~k~~~~a~~~g~ 309 (383)
T PRK09860 278 GVCNAVLLPHVQVFNSKVAAARLRDCAAAMGV 309 (383)
T ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHHHHhCC
Confidence 99999999999999999999999999998885
No 83
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=99.49 E-value=1.7e-14 Score=153.82 Aligned_cols=77 Identities=35% Similarity=0.531 Sum_probs=74.4
Q ss_pred cccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhc
Q psy2427 370 RVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTA 446 (660)
Q Consensus 370 ~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~ 446 (660)
+.+|.|+||||+|||||+|+++|+++++.+.|..+.++.++|+.+|+||+++.++|++++++|++|||+|++|+|++
T Consensus 108 ~~~p~i~VPTtagtgse~t~~avi~~~~~~~k~~~~~~~~~p~~~i~Dp~l~~~~P~~~~~~~~~Dal~h~~E~~~s 184 (332)
T cd08180 108 KKPLFIAIPTTSGTGSEVTSFAVITDPETGVKYPLVDDELLPDIAILDPELVKTVPPAVTADTGMDVLTHALEAYVS 184 (332)
T ss_pred CCCCEEEeCCCCcchHhhCCeEEEEecCCCeeEEeeCCCccCCEEEECchhhccCCHHHHHHhHHHHHHHHHHHHHc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999998
No 84
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=99.48 E-value=5.5e-14 Score=152.55 Aligned_cols=101 Identities=45% Similarity=0.665 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcC
Q psy2427 254 PVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIP 333 (660)
Q Consensus 254 ~~s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~ 333 (660)
|+++.+++++++++.++++++++|++|.++|++|++|++++|+++.++|++++|+|+|+|++.++ ++
T Consensus 205 p~td~~a~~ai~~i~~~l~~a~~~~~~~~ar~~~~~As~laG~a~~~~g~g~~Hal~h~l~~~~~-------------i~ 271 (376)
T cd08193 205 PLSDLLALEALRLLGANIPRAVKDGDDLEAREAMLLGAMYAGQAFANAPVAAVHALAYPLGGKFH-------------IP 271 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhhcCcC-------------CC
Confidence 37899999999999999999999999999999999999999999999999999999999998653 99
Q ss_pred chhHHHhhHHHHHHhhhcCCchhhhhHhhhhccc
Q psy2427 334 HGLSVVMSAPAVFNFTAASSPERHIEAAELLGAD 367 (660)
Q Consensus 334 HG~avai~l~~~l~~~~~~~~er~~~la~~lg~~ 367 (660)
||+++++++|++++|+.+..++++.++++.++..
T Consensus 272 HG~~~ai~lp~v~~~~~~~~~~~~~~l~~~l~~~ 305 (376)
T cd08193 272 HGLSNALVLPHVLRFNAPAAEERYAELADALGPD 305 (376)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999998853
No 85
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=99.48 E-value=8.1e-14 Score=151.43 Aligned_cols=100 Identities=33% Similarity=0.468 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCc
Q psy2427 255 VSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPH 334 (660)
Q Consensus 255 ~s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~H 334 (660)
+++.+++++++++.++++++++|++|.++|+.|++|++++|++++++|++.+|+|+|+|++.+ +++||
T Consensus 208 ~sd~~a~~a~~li~~~l~~a~~~~~~~~ar~~m~~as~laG~a~~~~~~g~~Hai~~~l~~~~------------~~ipH 275 (383)
T cd08186 208 YSILLAKEAVRLIAEYLPKALEEPDNLQARYWLLYASAIAGIAIDNGLLHLTHALEHPLSALK------------PDLPH 275 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhcchhHHHHHhcCchhcCC------------CCCCh
Confidence 578999999999999999999999999999999999999999999999999999999999862 12999
Q ss_pred hhHHHhhHHHHHHhhhcCCchhhhhHhhhhcc
Q psy2427 335 GLSVVMSAPAVFNFTAASSPERHIEAAELLGA 366 (660)
Q Consensus 335 G~avai~l~~~l~~~~~~~~er~~~la~~lg~ 366 (660)
|+++|+++|++++||.+..++++.++++.++.
T Consensus 276 G~~~aillp~vl~~n~~~~~~~~~~la~~~~~ 307 (383)
T cd08186 276 GAGLAILLPAVVKHIYPATPEILAELLRPLVP 307 (383)
T ss_pred HHHHHHHHHHHHHHhhhhCHHHHHHHHHHhCc
Confidence 99999999999999999999999999988874
No 86
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=99.47 E-value=6.5e-14 Score=151.99 Aligned_cols=98 Identities=34% Similarity=0.577 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCch
Q psy2427 256 SDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 335 (660)
Q Consensus 256 s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG 335 (660)
++.+++++++++.++++++++||+|.++|++|++|++++|++++++|+++.|+|+|+|++.++ ++||
T Consensus 212 sd~~a~~a~~li~~~l~~~~~~~~~~~aR~~l~~As~laG~a~~~~g~g~~Hal~~~l~~~~~-------------i~HG 278 (379)
T TIGR02638 212 TDMLHLKAIEIIARWLRSAVEGGKDLEAREQMALGQYVAGMGFSNVGLGLVHGMAHPLGAFYN-------------TPHG 278 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhhhcCcC-------------CChH
Confidence 467899999999999999999999999999999999999999999999999999999998653 9999
Q ss_pred hHHHhhHHHHHHhhhcCCchhhhhHhhhhcc
Q psy2427 336 LSVVMSAPAVFNFTAASSPERHIEAAELLGA 366 (660)
Q Consensus 336 ~avai~l~~~l~~~~~~~~er~~~la~~lg~ 366 (660)
.++++++|++++|+.+..++++.++++.+|.
T Consensus 279 ~a~ai~lp~vl~~~~~~~~~~~~~la~~~g~ 309 (379)
T TIGR02638 279 VANAILLPHVMEFNAEFTGEKYREIAKAMGV 309 (379)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCC
Confidence 9999999999999999999999999998885
No 87
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=99.47 E-value=1.9e-13 Score=146.52 Aligned_cols=192 Identities=18% Similarity=0.205 Sum_probs=136.8
Q ss_pred ccccccccccC--CCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHH-------
Q psy2427 371 VKKADAVPTTS--GTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL------- 441 (660)
Q Consensus 371 ~~~~i~vPTt~--~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~------- 441 (660)
..|.|+||||+ .++++++....++.+ +.|..+ .....|+.+|+||+++.++|++++++|++|++.|++
T Consensus 107 ~~p~i~VPTT~~a~~ds~~~~k~~i~~~--~~kn~~-~~~~~P~~viiDp~l~~tlP~~~~~~G~~d~ik~~~i~d~~~~ 183 (344)
T TIGR01357 107 GIRFIQVPTTLLAMVDSSVGGKTGINFP--GGKNLI-GTFYQPKAVLIDPDFLKTLPDRELRSGMAEVIKHGLIADAELF 183 (344)
T ss_pred CCCEEEecCchhheeccccCcceeEeCC--CCceEE-eeccCCceEEEcHHHHhhCCHHHHHhHHHHHHHHHhhCCHHHH
Confidence 46999999984 668899888777654 234433 555689999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCCCCCCcccccCCCc--hHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhHhhhcccc
Q psy2427 442 ESFTALPYTERTPCPTDPLLRPAYQGQNP--VSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGV 519 (660)
Q Consensus 442 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as~~ag~~~~~~g~ 519 (660)
+-+.... ..-.. ..+.+++...+.+........+|+.+...|.-+-+
T Consensus 184 ~~l~~~~-----------------~~~~~~~~~~~~~~~i~~~i~~k~~~~~~d~~e~~~r~~l~~-------------- 232 (344)
T TIGR01357 184 DELESND-----------------KLVLRLQELEHLEELIKRSIEVKASIVAEDEKESGLRAILNF-------------- 232 (344)
T ss_pred HHHHhhH-----------------HHHhccccHHHHHHHHHHHHHHHHHHhccCCCcccchHHhhc--------------
Confidence 5555420 00111 35678888888888888888899988888773221
Q ss_pred hhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Q psy2427 520 HLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADT 599 (660)
Q Consensus 520 ~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~~~~~~~~~~~~~ 599 (660)
.|.++|.|.... .| ..++||+++++.+.. ..++++.+|.- +.. ..++
T Consensus 233 --GHt~~Hale~~~------~~----~~~~HG~avaig~~~------------~~~la~~~~~~----~~~-----~~~~ 279 (344)
T TIGR01357 233 --GHTIGHAIEAEA------GY----GKIPHGEAVAIGMVC------------EAKLSERLGLL----PAE-----LIER 279 (344)
T ss_pred --chhHHHHHHhhc------CC----CCCChHHHHHHHHHH------------HHHHHHHhCCC----CHH-----HHHH
Confidence 288888887652 01 139999999876632 34455544421 111 2578
Q ss_pred HHHHHHHcCCCCcccccCCCCCcHHHHHHhh
Q psy2427 600 VRGYMDQMKIENGLKVLGYTSADIPALVTGT 630 (660)
Q Consensus 600 l~~l~~~lglp~~L~elGi~~~~i~~ia~~a 630 (660)
+.+|++++|+|+++++. ++.+++-+..+..
T Consensus 280 i~~~l~~~g~p~~~~~~-~~~~~~~~~l~~d 309 (344)
T TIGR01357 280 LVQLLKRYGLPTDLPKD-LDVDELLNAMLND 309 (344)
T ss_pred HHHHHHHcCCCccCCCC-CCHHHHHHHHHHh
Confidence 99999999999999875 6666655554443
No 88
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=99.47 E-value=9.4e-14 Score=150.61 Aligned_cols=98 Identities=37% Similarity=0.518 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchh
Q psy2427 257 DVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGL 336 (660)
Q Consensus 257 ~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~ 336 (660)
+.+++++++++.++++++++|+.|.++|++|++|++++|+++.++|++++|+|+|+|++.++ ++||+
T Consensus 210 d~~a~~a~~~i~~~L~~~~~~~~~~~ar~~l~~As~laG~a~~~~~~g~~Hal~~~l~~~~~-------------i~HG~ 276 (377)
T cd08188 210 DLHALEAIRLIAANLPPAIANPTDLEARESMMLASLQAGLAFSNAILGAVHAMAHSLGGLLD-------------LPHGE 276 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhchhHHHHHHHhhhhhhCcC-------------CChHH
Confidence 56899999999999999999999999999999999999999999999999999999998653 99999
Q ss_pred HHHhhHHHHHHhhhcCCchhhhhHhhhhccc
Q psy2427 337 SVVMSAPAVFNFTAASSPERHIEAAELLGAD 367 (660)
Q Consensus 337 avai~l~~~l~~~~~~~~er~~~la~~lg~~ 367 (660)
++|+++|++++|+.+..++|+.++++.++.+
T Consensus 277 ~~ai~lp~vl~~~~~~~~~~~~~la~~~g~~ 307 (377)
T cd08188 277 CNAILLPHVMEFNYPAAPERYARIAEALGLD 307 (377)
T ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHhCCC
Confidence 9999999999999999999999999988853
No 89
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=99.45 E-value=1.7e-13 Score=147.28 Aligned_cols=96 Identities=27% Similarity=0.426 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchh
Q psy2427 257 DVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGL 336 (660)
Q Consensus 257 ~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~ 336 (660)
|.+++++++++.+++++++.|++|.++|++|++|++++|+++++++++++|+|+|+|++.++ ++||+
T Consensus 209 d~~a~~a~~li~~~L~~~~~~~~d~~aR~~~~~as~laG~a~~~~~~g~~Hal~~~l~~~~~-------------i~HG~ 275 (355)
T TIGR03405 209 RGLAIQAAADISRALPEVLAQPGDLALRSDMALAALKAGLAFSNTKTALAHSISYEMTLRHG-------------VPHGI 275 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhchhHHHHHHhhchhccCCC-------------CCcHH
Confidence 46899999999999999999999999999999999999999999999999999999987643 99999
Q ss_pred HHHhhHHHHHHhhhcCCchhhhhHhhhhc
Q psy2427 337 SVVMSAPAVFNFTAASSPERHIEAAELLG 365 (660)
Q Consensus 337 avai~l~~~l~~~~~~~~er~~~la~~lg 365 (660)
++++++|++++|+.+..++|+.++++.++
T Consensus 276 ~~aillp~vl~~n~~~~~~~~~~~~~~~g 304 (355)
T TIGR03405 276 ACSFTLPTVLRTALGRNPSRDALLQAVFG 304 (355)
T ss_pred HHHHHHHHHHHHhhccCHHHHHHHHHHhC
Confidence 99999999999999999999988888776
No 90
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=99.45 E-value=3.7e-13 Score=145.58 Aligned_cols=191 Identities=14% Similarity=0.101 Sum_probs=122.5
Q ss_pred ccccccccccCCCCCcccceEEEeeCCC-CceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcCCC
Q psy2427 371 VKKADAVPTTSGTGSETTGVSIFDYEPL-KAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPY 449 (660)
Q Consensus 371 ~~~~i~vPTt~~tgse~t~~~v~~~~~~-~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~ 449 (660)
..|+|+|||| |+|++++..+.....+ ..|+.+.+....|+.+|+||+++.++|++++++|..|++-| +++..
T Consensus 137 gip~I~IPTT--lla~vda~~g~~~~v~~~~~kn~~g~~~~P~~vi~Dp~~l~tlP~~~~~~G~~e~iK~---~~i~d-- 209 (389)
T PRK06203 137 GVRLIRIPTT--VLAQNDSGVGVKNGINAFGKKNFLGTFAPPYAVINDFAFLTTLPDRDWRAGLAEAVKV---ALIKD-- 209 (389)
T ss_pred CCCEEEEcCC--CccccCCCccchhheecCCCceeeccccCCCEEEEcHHHHhhCCHHHHHhHHHHHHHH---HhhcC--
Confidence 3699999999 7777776555433222 24666677888999999999999999999999999999965 33331
Q ss_pred CCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH------HH--hHhh---hccc
Q psy2427 450 TERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASA------MA--GVGF---GNAG 518 (660)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as~------~a--g~~~---~~~g 518 (660)
..-.+.+.++...... .+.+..+++.+.+. ++ +..+ .+.+
T Consensus 210 ---------------------------~~~~~~l~~~~~~~~~--~~~~~~~~~i~~~~~~k~~~v~~~~d~~e~g~r~~ 260 (389)
T PRK06203 210 ---------------------------AAFFDWLEAHAAALAA--RDPEAMEELIYRCAELHLEHIAGGGDPFEFGSSRP 260 (389)
T ss_pred ---------------------------HHHHHHHHHhHHHHhc--CCHHHHHHHHHHHHHHHHhhcccCCCccccCCcCc
Confidence 0011112222222211 13333444444332 22 2223 2345
Q ss_pred chhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhcc------CCHHHHHHHHHHhCCCCCC--CCHH
Q psy2427 519 VHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAA------SSPERHIEAAELLGADVSR--VKKA 590 (660)
Q Consensus 519 ~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~------~~~~~~~~ia~~lg~~~~~--~~~~ 590 (660)
++..|.++|+|++.. .| +++||++|++.++..++++.. ...+|+.++++.+|.+... .+.+
T Consensus 261 Ln~gHt~gHAlE~~~------~~-----~i~HGeAVAiGm~~~~~ls~~~g~~~~~~~~ri~~l~~~lglp~~~~~~~~~ 329 (389)
T PRK06203 261 LDFGHWSAHKLEQLT------NY-----ALRHGEAVAIGIALDSLYSYLLGLLSEAEAQRILALLRALGFPLYHPALATR 329 (389)
T ss_pred cccchhhhhhhhhcC------CC-----CCCcHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCccccccCcc
Confidence 788999999999842 12 699999999866666555543 4578888888888876432 2322
Q ss_pred HH-HHHHHHHHHHHHHHcC
Q psy2427 591 DA-GKLLADTVRGYMDQMK 608 (660)
Q Consensus 591 ~~-~~~~~~~l~~l~~~lg 608 (660)
++ ++.+++.++++.|..|
T Consensus 330 e~~~~~li~~~~~dkK~~~ 348 (389)
T PRK06203 330 DSKGRELLKGLEEFREHLG 348 (389)
T ss_pred cchHHHHHHHHHHHhhhcC
Confidence 22 4567788888877765
No 91
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=99.45 E-value=1.5e-13 Score=149.08 Aligned_cols=99 Identities=40% Similarity=0.627 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCch
Q psy2427 256 SDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 335 (660)
Q Consensus 256 s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG 335 (660)
++.+++++++++.++++++++|++|.++|++|++|++++|++++++|+++.|+|+|.|++.++ ++||
T Consensus 204 s~~~a~~a~~li~~~l~~a~~~~~~~~ar~~l~~as~laG~a~~~~~~g~~Hal~~~l~~~~~-------------i~HG 270 (375)
T cd08194 204 TDLFALSAIKLIGKNLRTAYLNPDNREAREEMMLGATEAGIAFSNASVALVHGMSRPIGALFH-------------VPHG 270 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhchhHHHHHHhhhhhhhCCC-------------CChH
Confidence 468999999999999999999999999999999999999999999999999999999988653 9999
Q ss_pred hHHHhhHHHHHHhhhcCCchhhhhHhhhhccc
Q psy2427 336 LSVVMSAPAVFNFTAASSPERHIEAAELLGAD 367 (660)
Q Consensus 336 ~avai~l~~~l~~~~~~~~er~~~la~~lg~~ 367 (660)
+++++++|++++|+.+..++|+.++++.+|..
T Consensus 271 ~~~ai~lp~v~~~~~~~~~~~~~~~a~~lg~~ 302 (375)
T cd08194 271 LSNAMLLPAVTEFSLPSAPERYADIARAMGEA 302 (375)
T ss_pred HHHHHHHHHHHHhhcccCHHHHHHHHHHhCCC
Confidence 99999999999999999999999999988863
No 92
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=99.43 E-value=2.2e-13 Score=147.46 Aligned_cols=113 Identities=28% Similarity=0.452 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCch
Q psy2427 256 SDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 335 (660)
Q Consensus 256 s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG 335 (660)
++.+++++++++.++++++++|+.|.++|++|++|++++|++++++|++++|+|+|+|++.++ ++||
T Consensus 205 td~~a~~a~~~i~~~l~~a~~~~~~~~ar~~l~~as~laG~a~~~~~~g~~H~l~h~l~~~~~-------------i~HG 271 (367)
T cd08182 205 SRAYARRAIRLILENLPPLLDEPGNLEARAKMAEASLLAGLAISNTRTTAAHAISYPLTSRYG-------------VPHG 271 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhchhHHHHHHHhchhhcCCC-------------CChH
Confidence 467899999999999999999999999999999999999999999999999999999998653 9999
Q ss_pred hHHHhhHHHHHHhhhcCCchhhhh--Hhhhhccccc--------cccccccccccC
Q psy2427 336 LSVVMSAPAVFNFTAASSPERHIE--AAELLGADVS--------RVKKADAVPTTS 381 (660)
Q Consensus 336 ~avai~l~~~l~~~~~~~~er~~~--la~~lg~~~~--------~~~~~i~vPTt~ 381 (660)
+++|+++|++++|+.+..++|+.+ +++.++.... .....+-+||+.
T Consensus 272 ~~~a~~lp~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~l~~~~glp~~L 327 (367)
T cd08182 272 LACALTLPALLRINLEALPEDLALEAILAAFGAPSAAEAAARIEALLKELGLPTRL 327 (367)
T ss_pred HHHHHHHHHHHHHhhhhChHhhhhHHHHHHhCcccHHHHHHHHHHHHHHcCCCCCH
Confidence 999999999999999999999988 7888876421 223345677754
No 93
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=99.42 E-value=4.4e-13 Score=144.37 Aligned_cols=96 Identities=33% Similarity=0.517 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchh
Q psy2427 257 DVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGL 336 (660)
Q Consensus 257 ~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~ 336 (660)
|.+++++++++.++++++++|+.|.++|++|++|++++|++++++|.+.+|+|+|+|++.++ ++||+
T Consensus 207 d~~a~~ai~l~~~~l~~~~~~~~~~~ar~~~~~as~laG~a~~~~g~~~~Hal~~~l~~~~~-------------~~HG~ 273 (357)
T cd08181 207 DMLAKEALELFKECLPKLLENELDEEAREKLMLASTLAGMVIAQTGTTLPHGLGYPLTYEKG-------------IPHGL 273 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhcccchhhHhhcCccccCCC-------------CCcHH
Confidence 46889999999999999999999999999999999999999999999999999999988643 99999
Q ss_pred HHHhhHHHHHHhhhcCCchhhhhHhhhhcc
Q psy2427 337 SVVMSAPAVFNFTAASSPERHIEAAELLGA 366 (660)
Q Consensus 337 avai~l~~~l~~~~~~~~er~~~la~~lg~ 366 (660)
++++++|++++|+.+..++++ ++++.+|.
T Consensus 274 ~~ai~lp~vl~~~~~~~~~~~-~~~~~~g~ 302 (357)
T cd08181 274 ANGIFLPEYLELAKEQIPEKV-FILKLLGF 302 (357)
T ss_pred HHHHHHHHHHHHHhhcCHHHH-HHHHHcCc
Confidence 999999999999999999999 88888775
No 94
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=99.41 E-value=5.2e-13 Score=145.90 Aligned_cols=99 Identities=35% Similarity=0.557 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCch
Q psy2427 256 SDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 335 (660)
Q Consensus 256 s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG 335 (660)
++.+++++++++.+++++++.++.|.++|++|++|++++|+++++++++++|+|+|+|++.++ ++||
T Consensus 213 sd~~a~~a~~~i~~~l~~a~~~~~d~~ar~~~~~as~laG~a~~~~~lg~~Hal~h~l~~~~~-------------i~HG 279 (398)
T cd08178 213 TDGLALQAIKLIFEYLPRSYKNGADPEAREKMHNAATIAGMAFANAFLGICHSMAHKLGAEFH-------------IPHG 279 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhhccCCC-------------CChH
Confidence 468999999999999999999999999999999999999999999999999999999998753 9999
Q ss_pred hHHHhhHHHHHHhhhcCC---------------chhhhhHhhhhccc
Q psy2427 336 LSVVMSAPAVFNFTAASS---------------PERHIEAAELLGAD 367 (660)
Q Consensus 336 ~avai~l~~~l~~~~~~~---------------~er~~~la~~lg~~ 367 (660)
+++|++||++++|+.+.. ++|+.++++.++.+
T Consensus 280 ~a~ai~lp~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~lg~~ 326 (398)
T cd08178 280 LANAILLPHVIRYNATDPPVKQAAFPQYKYPKAKERYAEIARFLGLP 326 (398)
T ss_pred HHHHHHHHHHHHhhcccccccccccccccccchHHHHHHHHHHcCCC
Confidence 999999999999997654 57888888888753
No 95
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=99.39 E-value=5.2e-13 Score=144.74 Aligned_cols=93 Identities=31% Similarity=0.443 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCch
Q psy2427 256 SDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 335 (660)
Q Consensus 256 s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG 335 (660)
++.+++++++++.+++++++.++.|.++|++|++|++++|+++.++|.+++|+|+|+|++.++ +|||
T Consensus 203 sd~~a~~ai~~i~~~l~~a~~~~~~~~ar~~~~~as~laG~a~~~~g~g~~Hai~h~lg~~~~-------------i~HG 269 (374)
T cd08183 203 TDALCRSGLPRGARALRRACENGEDAAARDDMALASLLGGIALANAGLGAVHGLAGPIGGLFD-------------APHG 269 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhchhhcCCC-------------CChH
Confidence 478999999999999999999999999999999999999999999999999999999998653 9999
Q ss_pred hHHHhhHHHHHHhhhcCCchhhhhHh
Q psy2427 336 LSVVMSAPAVFNFTAASSPERHIEAA 361 (660)
Q Consensus 336 ~avai~l~~~l~~~~~~~~er~~~la 361 (660)
+++++++|++++|+.+..++++.+++
T Consensus 270 ~a~ai~lp~vl~~~~~~~~~~~~~~~ 295 (374)
T cd08183 270 AICATLLPPVLAANIRALRQRGPGNP 295 (374)
T ss_pred HHHHHHHHHHHHHhhhhCchhhhhhh
Confidence 99999999999999998888766554
No 96
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=99.39 E-value=8.1e-13 Score=143.63 Aligned_cols=96 Identities=36% Similarity=0.506 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCch
Q psy2427 256 SDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 335 (660)
Q Consensus 256 s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG 335 (660)
++.+++++++++.+++++++.|+.|.++|++|++|++++|++++++|++.+|+|+|+|++.+. +++||
T Consensus 212 s~~~a~~a~~li~~~l~~a~~~~~~~~ar~~~~~as~laG~a~~~~g~g~~Hai~~~l~~~~~------------~i~HG 279 (380)
T cd08185 212 SDMLALEAIELIAKYLPRAVKDGSDLEAREKMAWANTLGGMVEANSGCTSPHALEHALSGLHP------------DLPHG 279 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHcCccchhhhHhhChHhccCC------------CCChH
Confidence 368899999999999999999999999999999999999999999999999999999998641 39999
Q ss_pred hHHHhhHHHHHHhhhcCCchhhhhHhhh
Q psy2427 336 LSVVMSAPAVFNFTAASSPERHIEAAEL 363 (660)
Q Consensus 336 ~avai~l~~~l~~~~~~~~er~~~la~~ 363 (660)
+++++++|++++|+.+..++++.++++.
T Consensus 280 ~~~ai~lp~vl~~~~~~~~~~~~~la~~ 307 (380)
T cd08185 280 AGLAMLSPAYFEFFARKAPEKFAFVARA 307 (380)
T ss_pred HHHHHHhHHHHHHhhhhCHHHHHHHHHh
Confidence 9999999999999999999999988763
No 97
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=99.38 E-value=7.5e-13 Score=143.43 Aligned_cols=97 Identities=31% Similarity=0.422 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCch
Q psy2427 256 SDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 335 (660)
Q Consensus 256 s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG 335 (660)
++.+++++++++.+++++++.+++|.++|++|++|++++|+++.+ |+|.+|+|+|+|++.++ ++||
T Consensus 209 s~~~a~~a~~~~~~~l~~~~~~~~~~~ar~~~~~as~laG~a~~~-~~g~~Hal~h~l~~~~~-------------i~HG 274 (370)
T cd08192 209 ADGIALEGLRLISRHLERAVRDGGDLEARGGMMMAASMGAMAFQK-GLGAVHSLSHPLGALYN-------------LHHG 274 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhh-ccHHHHHhhhHHhhCCC-------------CChH
Confidence 467899999999999999999999999999999999999999987 99999999999998653 9999
Q ss_pred hHHHhhHHHHHHhhhcCCchhhhhHhhhhcc
Q psy2427 336 LSVVMSAPAVFNFTAASSPERHIEAAELLGA 366 (660)
Q Consensus 336 ~avai~l~~~l~~~~~~~~er~~~la~~lg~ 366 (660)
.++++++|++++|+.+..++|+.++++.++.
T Consensus 275 ~~~ai~lp~v~~~~~~~~~~k~~~~a~~~~~ 305 (370)
T cd08192 275 LLNAVLLPYVLRFNRPAIEEKIARLARALAM 305 (370)
T ss_pred HHHHHHHHHHHHHhhhcCHHHHHHHHHHhCC
Confidence 9999999999999999999999999877653
No 98
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=99.37 E-value=3.4e-13 Score=144.04 Aligned_cols=75 Identities=32% Similarity=0.396 Sum_probs=72.0
Q ss_pred ccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcC
Q psy2427 371 VKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTAL 447 (660)
Q Consensus 371 ~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~ 447 (660)
.+|.|+||||++||||+|+.+|+++++ +.|.++.++ ++|+.+|+||+++.++|++++++|++|||+|++|+|++.
T Consensus 104 ~~p~i~iPTt~~tgse~t~~avi~~~~-~~K~~~~~~-~~P~~vi~Dp~l~~t~P~~~~~~g~~Dal~h~~E~~~~~ 178 (332)
T cd07766 104 GLPIIIVPTTAATGSEVSPKAVITDKE-GGKTGFFYP-DNPDVVFVDTDITKGLPPRQVASGGVDALSHALEAYSTK 178 (332)
T ss_pred CCCEEEEeCCCchhhccCCeEEEEeCC-CceEEeccC-CccCEEEEChhhhhCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 579999999999999999999999998 889999988 999999999999999999999999999999999999984
No 99
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=99.37 E-value=7.5e-13 Score=143.85 Aligned_cols=74 Identities=31% Similarity=0.560 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHHhhhcCCchhhhhH
Q psy2427 281 LEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEA 360 (660)
Q Consensus 281 ~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~~~~~~~~er~~~l 360 (660)
.++|++|++|++++|++++++|+++.|+|+|+|++.++ +|||.++++++|++++|+.+..++|+.++
T Consensus 236 ~~aR~~~~~as~laG~a~~~~g~g~~Hal~h~l~~~~~-------------ipHG~~~ai~lp~vl~~~~~~~~~k~~~l 302 (382)
T PRK10624 236 KEAGEGMALGQYIAGMGFSNVGLGLVHGMAHPLGAFYN-------------TPHGVANAILLPHVMEYNADFTGEKYRDI 302 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHhhhHHhhCCC-------------CChHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 49999999999999999999999999999999998654 99999999999999999999999999999
Q ss_pred hhhhccc
Q psy2427 361 AELLGAD 367 (660)
Q Consensus 361 a~~lg~~ 367 (660)
++.+|..
T Consensus 303 a~~~g~~ 309 (382)
T PRK10624 303 ARAMGVK 309 (382)
T ss_pred HHHhCCC
Confidence 9988853
No 100
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=99.37 E-value=2.6e-13 Score=146.71 Aligned_cols=75 Identities=21% Similarity=0.149 Sum_probs=70.1
Q ss_pred cccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcC
Q psy2427 372 KKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTAL 447 (660)
Q Consensus 372 ~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~ 447 (660)
+|+|+||||++||||+|+.+|+++++.+.|....++. +|+.+|+||+++.++|++++++|++|||+||+|+|++.
T Consensus 109 ~p~i~IPTtagtgSe~t~~avi~~~~~~~k~~~~~~~-~P~~~i~Dp~l~~tlP~~~~~~g~~Dal~ha~E~y~s~ 183 (366)
T PRK09423 109 VPVVIVPTIASTDAPTSALSVIYTEEGEFERYLFLPK-NPDLVLVDTAIIAKAPARFLAAGIGDALATWFEARACS 183 (366)
T ss_pred CCEEEeCCccccCccccCceEEECCCCceeeeccccC-CCCEEEEchHHHHhCCHHHHHHhHHHHHHHHHHHHHHH
Confidence 6999999999999999999999998877777777665 79999999999999999999999999999999999985
No 101
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=99.33 E-value=7.2e-13 Score=133.84 Aligned_cols=77 Identities=30% Similarity=0.448 Sum_probs=74.7
Q ss_pred cccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHH
Q psy2427 368 VSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESF 444 (660)
Q Consensus 368 ~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~ 444 (660)
..+-+|+.+|-|+++||||++..+||++.+++.|....++.++|.++|+||++++++|+|++++|.+|+|+|.+|.|
T Consensus 124 i~~alP~g~VLTLpATGSEmn~~aVIt~~~t~eK~~~~S~~v~PkFsvLDP~~tyTlP~~Q~a~G~vDa~sHv~EqY 200 (384)
T COG1979 124 IKDALPIGTVLTLPATGSEMNAGAVITNEETKEKLGFGSPLVFPKFSVLDPEVTYTLPKRQTANGVVDAFSHVFEQY 200 (384)
T ss_pred cccccccceEEEccccccccCCCceecccccccceeccCcccccceEEeCCcceeecChHHhhhhHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999998
No 102
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=99.29 E-value=9.3e-13 Score=141.49 Aligned_cols=69 Identities=23% Similarity=0.137 Sum_probs=60.0
Q ss_pred ccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcC
Q psy2427 371 VKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTAL 447 (660)
Q Consensus 371 ~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~ 447 (660)
.+|+|+||||+|||++++..++++++ +.|.++. ..+|+.+|+||+++.++|++++++|++|| +|.|.+.
T Consensus 104 ~~p~i~IPTTagt~g~~~~~~~v~~~--g~K~~~~--~~~P~~viiDp~l~~slP~~~~~sg~~Da----le~~~~~ 172 (348)
T cd08175 104 GIPYISVPTAPSMDGYTSSGAPIILN--GFKKTYQ--AVAPIAIFADTDILANAPQRMIAAGFGDL----LGKYTAL 172 (348)
T ss_pred CCCEEEecCcccccCccCCCceEecC--Ccccccc--CCCCeEEEEChHHHHhCCHHHHHhhHHHH----HHhcccH
Confidence 36999999999999999988888775 6677773 46899999999999999999999999997 5778774
No 103
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=99.27 E-value=2.4e-11 Score=131.02 Aligned_cols=222 Identities=17% Similarity=0.137 Sum_probs=140.1
Q ss_pred ccccccccccC--CCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHH--H-HHh
Q psy2427 371 VKKADAVPTTS--GTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL--E-SFT 445 (660)
Q Consensus 371 ~~~~i~vPTt~--~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~--E-~~~ 445 (660)
..|+|+||||+ .++|+++..++++.+.. | .+......|+.+|+||+++.++|++++++|++|++.|++ + .|+
T Consensus 118 gip~i~IPTT~~s~~ds~~~~k~~i~~~~~--K-~~~g~~~~P~~vi~Dp~l~~tlP~~~~~~G~~d~ik~~~i~d~~~~ 194 (358)
T PRK00002 118 GIRFIQVPTTLLAQVDSSVGGKTGINHPLG--K-NLIGAFYQPKAVLIDLDFLKTLPERELRAGLAEVIKYGLIADPEFF 194 (358)
T ss_pred CCCEEEcCchhhhccccCcCCceecCCccc--c-eeeeecCCCceEEEcHHHHccCCHHHHHhhHHHHHHHHhhCCHHHH
Confidence 46999999995 55688888988876533 4 345667789999999999999999999999999999988 5 343
Q ss_pred cCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhHhhhcccchhhhhh
Q psy2427 446 ALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGL 525 (660)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as~~ag~~~~~~g~~~~H~l 525 (660)
..-.. +. +. ......+.+++...+.+........+|+.+...|.-+- .| |.+
T Consensus 195 ~~l~~--~~--------~~--~~~~~~~~~~~~i~~~i~~k~~~v~~d~~e~g~r~~ln------------~G----Ht~ 246 (358)
T PRK00002 195 EWLEA--NV--------DA--LLALDGEALEEAIARSCEIKADVVAADERESGLRALLN------------FG----HTF 246 (358)
T ss_pred HHHHh--hH--------HH--HhhcCHHHHHHHHHHHHHHHHHHHcCCCccccccHHHh------------cc----chH
Confidence 32000 00 00 00011345565555666666666667777776665542 23 666
Q ss_pred hccccCCccccCCCCCCCCCC-CCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHH
Q psy2427 526 SYPISGNVKTFHPAGYSDDHP-IIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYM 604 (660)
Q Consensus 526 ~~~l~~~~~~~~~~~~~~~~~-~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~~~~~~~~~~~~~l~~l~ 604 (660)
+|.|-... .+ .++||+++|+-+-.. ..++..+|.- +.. ..+++.+++
T Consensus 247 ~HalE~~~-----------~~~~~~HG~aVa~Gm~~~------------~~l~~~~g~~----~~~-----~~~~~~~~l 294 (358)
T PRK00002 247 GHAIEAET-----------GYGKWLHGEAVAIGMVMA------------ARLSERLGLL----SEA-----DAERIRALL 294 (358)
T ss_pred HHHHhccc-----------CCCCcChHHHHHHHHHHH------------HHHHHHhCCC----CHH-----HHHHHHHHH
Confidence 66555432 11 489998888544221 2344444431 111 257899999
Q ss_pred HHcCCCCcccccCCCCCcHHHHHHhhccC--CCC-------C-C-CCCccCCHHHHHHHHHHHh
Q psy2427 605 DQMKIENGLKVLGYTSADIPALVTGTLPQ--HRI-------T-K-LAPREQSEEDLANLFENSM 657 (660)
Q Consensus 605 ~~lglp~~L~elGi~~~~i~~ia~~a~~~--~~~-------~-~-~~P~~~t~e~i~~il~~a~ 657 (660)
+++|+|+... +++.+++-+.....-.. ++. . . .-...+++|++.+.++...
T Consensus 295 ~~~g~p~~~~--~~~~~~~~~~l~~dkk~~~~~~~~vl~~~ig~~~~~~~v~~~~l~~~~~~~~ 356 (358)
T PRK00002 295 ERAGLPTSLP--DLDAEALLEAMKRDKKVRGGKLRFVLLKGIGKAVIAEDVDDELLLAALEECL 356 (358)
T ss_pred HHcCCCCCCC--CCCHHHHHHHHHHhhhccCCCEEEEEecCCccEEEeCCCCHHHHHHHHHHHh
Confidence 9999999887 66766665555544221 110 0 0 0113589999998887543
No 104
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=99.24 E-value=1.8e-11 Score=146.07 Aligned_cols=98 Identities=35% Similarity=0.536 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCc
Q psy2427 256 SDVWARFALQTIRQYFKRAVYNQ-DDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPH 334 (660)
Q Consensus 256 s~~la~~ai~~i~~~l~~~~~d~-~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~H 334 (660)
++.+++++++++.+++++++.|+ +|.++|++|++|++++|+++++++.+++|+|+|+|++.++ ++|
T Consensus 674 sd~~a~~ai~li~~~L~~a~~~~~~d~~ar~~m~~As~laG~a~~~~~~g~~Hal~~~lg~~~~-------------v~H 740 (862)
T PRK13805 674 TDGLALQAIKLVFEYLPRSYKNGAKDPEAREKMHNASTIAGMAFANAFLGICHSMAHKLGAEFH-------------IPH 740 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhhcCcC-------------CCh
Confidence 46899999999999999999999 9999999999999999999999999999999999998653 999
Q ss_pred hhHHHhhHHHHHHhhhcC--------------CchhhhhHhhhhcc
Q psy2427 335 GLSVVMSAPAVFNFTAAS--------------SPERHIEAAELLGA 366 (660)
Q Consensus 335 G~avai~l~~~l~~~~~~--------------~~er~~~la~~lg~ 366 (660)
|+++++++|++++|+.+. .++|+.++++.++.
T Consensus 741 G~~~aillP~vl~~n~~~~~~~~~~~~~~~~~~~~k~~~la~~l~~ 786 (862)
T PRK13805 741 GRANAILLPHVIRYNATDPPKQAAFPQYEYPRADERYAEIARHLGL 786 (862)
T ss_pred HHHHHHHHHHHHHHhhhccccccccccccccccHHHHHHHHHHhCC
Confidence 999999999999999873 46899999988875
No 105
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=99.22 E-value=3e-11 Score=127.10 Aligned_cols=238 Identities=15% Similarity=0.121 Sum_probs=175.5
Q ss_pred ccccccccccCCCCCcccc-eEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcCCC
Q psy2427 371 VKKADAVPTTSGTGSETTG-VSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPY 449 (660)
Q Consensus 371 ~~~~i~vPTt~~tgse~t~-~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~ 449 (660)
.+|+|+|||+++||+.+|+ .+|++++++ .|.++... -|+.+|+|++++..+|.|++++|++|+|++|+|..-...+
T Consensus 108 ~~pfIsvPT~AS~Da~~Sp~aSv~~~~~g-~~~~~~~~--~P~~vivD~evI~~AP~r~L~AGiGD~lakw~e~~dw~~a 184 (360)
T COG0371 108 GLPFISVPTIASTDAITSPVASVIYNGKG-DKYSFLAK--APDAVIVDTEVIAAAPRRLLAAGIGDALAKWTEARDWKLA 184 (360)
T ss_pred CCCEEEecCccccccccCCceeeEEcCCC-ceeeeecC--CCcEEEEcHHHHHhChHHHHHhcchHhhhhHHHHHHHHHh
Confidence 3599999999999999999 899998865 45554333 4999999999999999999999999999999999743211
Q ss_pred CCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHH---HHHHHHHHH-HHHhHhhhcccchhhhhh
Q psy2427 450 TERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLE---ARSHMHLAS-AMAGVGFGNAGVHLCHGL 525 (660)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~---ar~~~~~as-~~ag~~~~~~g~~~~H~l 525 (660)
...+ ..........+++.|.+.+.++...+..+. ... +-+.+..++ .|+|++++++++|.+|++
T Consensus 185 ~~~~-----------~e~~~~~a~~la~~~~~~~~~~~~~i~~~~-~~~~~~~vealI~sg~~m~g~G~s~p~sgaeH~~ 252 (360)
T COG0371 185 HRLT-----------GEGYSEAAAALAKMCAKTLIEAAEEIKNAL-EEAVRPLVEALIESGTAMSGLGSSRPASGAEHAF 252 (360)
T ss_pred cccc-----------cchhhHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhcceEEeccCCCCccHHHHHH
Confidence 1110 011136677899999999999999887654 222 223444333 557788899999999999
Q ss_pred hccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCCCHHHHHHHHHH-HHHHHH
Q psy2427 526 SYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLAD-TVRGYM 604 (660)
Q Consensus 526 ~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~~~~~~~~~~~~-~l~~l~ 604 (660)
+|.|+.+.. ..|+..||+.||+-. .++.|..+..+++. .+ ++++|+
T Consensus 253 hh~Lt~l~~---------~~h~~lHGekVa~Gt-lv~~~L~~~~~~~~-----------------------~~~~i~~~~ 299 (360)
T COG0371 253 HHGLTMLPP---------ETHHALHGEKVAYGT-LVQLYLHGKNWEEI-----------------------EARKIRDFL 299 (360)
T ss_pred HHHHHhccc---------CCccccchhHHHHHH-HHHHHHhcCchhhh-----------------------hHHHHHHHH
Confidence 999999852 234799998777422 22333333322210 12 599999
Q ss_pred HHcCCCCcccccCCCCCcH---HHHHHhhccCCCCCCCCCccCCHHHHHHHHHHH
Q psy2427 605 DQMKIENGLKVLGYTSADI---PALVTGTLPQHRITKLAPREQSEEDLANLFENS 656 (660)
Q Consensus 605 ~~lglp~~L~elGi~~~~i---~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~a 656 (660)
+++|+|++|+|+|++++++ ..+|..+......+...|+.+|+|.++++++..
T Consensus 300 ~~~glPttl~elgl~~~~~~eal~vAh~~r~~r~TIl~~~~~~t~e~~~~a~~~t 354 (360)
T COG0371 300 KKVGLPTTLAELGLDDDEVIEALTVAHAIRPERETILGMPFGLTPEAARAALEAT 354 (360)
T ss_pred HHcCCCcCHHHcCCCchhHHHHHHHHHHhCCCCcccccCCCCCCHHHHHHHHHHh
Confidence 9999999999999996664 455555555556667789999999999998854
No 106
>PLN02834 3-dehydroquinate synthase
Probab=99.20 E-value=1.7e-10 Score=126.46 Aligned_cols=212 Identities=17% Similarity=0.123 Sum_probs=125.5
Q ss_pred ccccccccccCCCCCcccceEEEeeCCCCceeeeecc--------CCCccccccccccccCCCchhhhhcchhhH-----
Q psy2427 371 VKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANR--------ALKPTLGLIDPLHTLSLPERVTAYSGFDVF----- 437 (660)
Q Consensus 371 ~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~--------~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal----- 437 (660)
..|+|+||||+ .+++ +...+.|..+.++ ...|+.+|+||+++.++|++++++|..|++
T Consensus 189 giplI~VPTTl--------lA~v-Dss~ggK~~i~~~~~KNlig~f~~P~~VivDp~~l~tlP~r~~~sG~~E~iK~~~i 259 (433)
T PLN02834 189 GVNFVQIPTTV--------MAQV-DSSVGGKTGVNHPLGKNMIGAFYQPQCVLIDTDTLATLPDRELASGIAEVVKYGLI 259 (433)
T ss_pred CCCEEEECCcC--------CeEE-ecCCCceeEEecCCcccccccccCCCEEEEcHHHHhhCCHHHHHhHHHHHHHHHHh
Confidence 46999999995 3444 4445667777654 568999999999999999999999999999
Q ss_pred --HHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhHhhh
Q psy2427 438 --CHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFG 515 (660)
Q Consensus 438 --~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as~~ag~~~~ 515 (660)
..++|-+.... . .. ....+ ..+++...+.+...+.....|+.+...| ..-
T Consensus 260 ~d~~~fe~l~~~~---~----------~~-~~~~~--~~l~~~i~~s~~~K~~vv~~d~~e~G~r------------~~L 311 (433)
T PLN02834 260 RDAEFFEWQEANM---E----------KL-LARDP--GALAYAIKRSCENKAEVVSLDEKESGLR------------ATL 311 (433)
T ss_pred cCHHHHHHHHhhH---H----------hH-hccCH--HHHHHHHHHHHHHHHHhhcCCCcccchh------------hhh
Confidence 55555443310 0 00 01111 2233333333333333333343333222 122
Q ss_pred cccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCCCHHHHHHH
Q psy2427 516 NAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKL 595 (660)
Q Consensus 516 ~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~~~~~~~~~ 595 (660)
|.|-.++|+|+..+. | +.++||+++++-+-.. ..+++.+|.- +.+
T Consensus 312 n~GHT~gHAiE~~~~----------~----~~~~HGeaVaiGm~~~------------~~ls~~~G~~----~~~----- 356 (433)
T PLN02834 312 NLGHTFGHAIETGPG----------Y----GEWLHGEAVAAGTVMA------------ADMSYRLGWI----DMS----- 356 (433)
T ss_pred cCcHHHHHHHHhhcC----------C----CCCChHHHHHHHHHHH------------HHHHHHhcCC----CHH-----
Confidence 556667777776432 1 1489998888544322 2345555532 111
Q ss_pred HHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhcc--CCCCC-------CCCC---ccCCHHHHHHHHHH
Q psy2427 596 LADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLP--QHRIT-------KLAP---REQSEEDLANLFEN 655 (660)
Q Consensus 596 ~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~--~~~~~-------~~~P---~~~t~e~i~~il~~ 655 (660)
..+++.++++++|+|+++.+ +++.+++.......-. .+.+. -..+ ..++++++.+.+++
T Consensus 357 ~~~~i~~ll~~~gLP~~~~~-~~~~~~~~~~~~~dkK~~~~~i~~vl~~~~iG~~~~~~~~~~~~l~~~l~~ 427 (433)
T PLN02834 357 LVNRIFALLKRAKLPTNPPE-KMTVEMFKSLMAVDKKVADGLLRLILLKGELGNCVFTGDFDREALEETLRA 427 (433)
T ss_pred HHHHHHHHHHHcCCCCcccc-cCCHHHHHHHHhhcccccCCeEEEEEecCCCCCEEEeCCCCHHHHHHHHHH
Confidence 26789999999999999988 7776666555444311 11100 0111 35788888888764
No 107
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=99.16 E-value=2.2e-11 Score=130.59 Aligned_cols=195 Identities=16% Similarity=0.132 Sum_probs=125.2
Q ss_pred ccccccccccCC--CCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHH---HHHh
Q psy2427 371 VKKADAVPTTSG--TGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL---ESFT 445 (660)
Q Consensus 371 ~~~~i~vPTt~~--tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~---E~~~ 445 (660)
..|+|+||||+. ++|+++....++.. ..|. .......|+.+|+||+++.++|++++++|.+|++.|++ +.++
T Consensus 111 gip~i~VPTT~~a~vds~~~~k~~i~~~--~~kn-~~g~~~~P~~viiD~~~l~tlP~~~~~~G~~d~ik~~~i~d~~~~ 187 (345)
T cd08195 111 GIDFIQIPTTLLAQVDSSVGGKTGVNHP--LGKN-LIGAFYQPKLVLIDTDFLKTLPEREFRSGLAEVIKYGLIADAELF 187 (345)
T ss_pred CCCeEEcchhHHHHhhccCCCcceecCC--CCCc-eecccCCCCEEEEehHHhhhCCHHHHHhHHHHHHHHHhhCCHHHH
Confidence 469999999963 36788877777554 2344 34556789999999999999999999999999999999 7776
Q ss_pred cCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhHhhhcccchhhhhh
Q psy2427 446 ALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGL 525 (660)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as~~ag~~~~~~g~~~~H~l 525 (660)
..-..+ .........+.+++...+.+........+|+.+...|.-+- ..|-+
T Consensus 188 ~~l~~~------------~~~~~~~~~~~~~~~i~~~i~~k~~~v~~d~~e~~~r~~ln----------------~GHt~ 239 (345)
T cd08195 188 EWLEEN------------KEAILALDPEALEEIIARSCEIKAEVVEQDEREKGLRAILN----------------FGHTF 239 (345)
T ss_pred HHHHhh------------HHHHhccCHHHHHHHHHHHHHHHHHHhccCccccCCceeec----------------Ccccc
Confidence 631000 00000112345565555566666666667777766665322 23666
Q ss_pred hccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy2427 526 SYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMD 605 (660)
Q Consensus 526 ~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~~~~~~~~~~~~~l~~l~~ 605 (660)
+|.|...+ .| ..++||+++++-+.... ++++.+|.- +.. ..+++.++++
T Consensus 240 gHalE~~~------~~----~~~~HGeaVaiGm~~~~------------~l~~~~g~~----~~~-----~~~~i~~~l~ 288 (345)
T cd08195 240 GHAIEALT------GY----GTLLHGEAVAIGMVAAA------------RLSERLGLL----SEE-----DLERIEKLLK 288 (345)
T ss_pred hHHHHhhc------CC----CCcchHHHHHHHHHHHH------------HHHHHhCCC----CHH-----HHHHHHHHHH
Confidence 66666542 01 15899988885443322 334444431 111 2578999999
Q ss_pred HcCCCCcccccCCCCCcHHHHHHh
Q psy2427 606 QMKIENGLKVLGYTSADIPALVTG 629 (660)
Q Consensus 606 ~lglp~~L~elGi~~~~i~~ia~~ 629 (660)
++|+|+.+ .+++.+++-+....
T Consensus 289 ~~g~p~~~--~~~~~~~~~~~l~~ 310 (345)
T cd08195 289 KLGLPTSL--PDLDAEDLLEAMKH 310 (345)
T ss_pred HcCCCCCC--CCCCHHHHHHHHHH
Confidence 99999988 45665555444433
No 108
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=99.12 E-value=3.6e-11 Score=121.82 Aligned_cols=148 Identities=18% Similarity=0.119 Sum_probs=107.1
Q ss_pred cccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHH---hcCC
Q psy2427 372 KKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESF---TALP 448 (660)
Q Consensus 372 ~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~---~~~~ 448 (660)
+|+++|||.+++++-+|+.+.+..+ .+.|.++. ++..|..++.|.+++.++|.+++++|.+|.+++..=.. ++.
T Consensus 100 ~p~isVPTa~S~DG~aS~~Asl~~~-~g~k~s~~-~a~~P~aIiaD~dIi~~AP~~l~~aG~GDli~k~tA~~DW~La~- 176 (250)
T PF13685_consen 100 IPFISVPTAASHDGFASPVASLTVD-DGFKVSYG-PAKAPIAIIADTDIIANAPRRLIAAGFGDLISKYTALADWKLAH- 176 (250)
T ss_dssp --EEEEES--SSGGGTSSEEEEEET--TEEEEE--E----SEEEEEHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CCEEEeccccccccccCCCeeEEec-CCCceeec-CCCCCeEEEEeHHHHHhCCHHHHHhhHHHHHHhhhhHHHHHHHH-
Confidence 6999999999999999999999987 57777775 56679999999999999999999999999998876442 231
Q ss_pred CCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhHhhhcccchhhhhhhcc
Q psy2427 449 YTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYP 528 (660)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as~~ag~~~~~~g~~~~H~l~~~ 528 (660)
.+.+.+++.+.+++.+.+...+++++|.++-+.++.+-.++|++.+....|..|.|+|.
T Consensus 177 ---------------------~~~e~~~~~~~~~v~~~~~~~~~~~~d~~~i~~L~~~L~~sg~amSRPaSGsEH~~sH~ 235 (250)
T PF13685_consen 177 ---------------------EYGEPYCEYAADMVEEALRNILKDPDDPEAIKALMEALIMSGLAMSRPASGSEHLFSHA 235 (250)
T ss_dssp ---------------------HTTS---HHHHHHHHHHHH---S-TT-HHHHHHHHHHHHHHHHHHSTTT-SHHHHHHHH
T ss_pred ---------------------HhhhhHHHHHHHHHHHHHHHHHcCcCcHHHHHHHHHHHHHcccccCCCccchhhHHHHH
Confidence 22345788888899999999998889999999999999999999988889999999998
Q ss_pred ccCCccccCCCCCCCCCCCCCcccccc
Q psy2427 529 ISGNVKTFHPAGYSDDHPIIPHGLSVV 555 (660)
Q Consensus 529 l~~~~~~~~~~~~~~~~~~~~HG~~~~ 555 (660)
|-..+ ...+||+.+|
T Consensus 236 le~~~------------~~~lHG~~Vg 250 (250)
T PF13685_consen 236 LEMLA------------KPALHGEQVG 250 (250)
T ss_dssp HHHH-------------S---HHHHHH
T ss_pred HHhhc------------CCCccccccC
Confidence 87652 2588998764
No 109
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=99.07 E-value=5.6e-10 Score=119.71 Aligned_cols=70 Identities=20% Similarity=0.160 Sum_probs=53.9
Q ss_pred ccccccccccCCCCCcccceEEEeeCC---CCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHH
Q psy2427 371 VKKADAVPTTSGTGSETTGVSIFDYEP---LKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESF 444 (660)
Q Consensus 371 ~~~~i~vPTt~~tgse~t~~~v~~~~~---~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~ 444 (660)
..|.|+||||+++.+. +++.... .+.|+.+......|+.+|+||+++.++|++++++|++|++.|++|.-
T Consensus 110 gip~I~IPTTlla~~d----a~i~~k~~vn~~~~kn~~g~~~~P~~vivDp~~l~tlP~~~~~aG~~d~ik~a~~~~ 182 (355)
T cd08197 110 GIRLVHIPTTLLAQSD----SVLSLKQAVNSTYGKNLIGLYYPPSFIFIDTRVLRTLPERQIRSGLCETVKNALAQE 182 (355)
T ss_pred CCCEEEecCccccccc----ccccCceeeeCCCCcceeecCCCCcEEEEcHHHHhhCCHHHHHhhHHHHHHHHHhcC
Confidence 4699999999754432 3333221 12344455777889999999999999999999999999999999884
No 110
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=98.99 E-value=2e-09 Score=115.19 Aligned_cols=69 Identities=19% Similarity=0.116 Sum_probs=53.2
Q ss_pred ccccccccccC--CCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHH
Q psy2427 371 VKKADAVPTTS--GTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALE 442 (660)
Q Consensus 371 ~~~~i~vPTt~--~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E 442 (660)
..|.|+||||+ +++|.+++...++.. .|+.+......|+.+|+||+++.++|++++++|++|++.|++=
T Consensus 109 gip~i~VPTTlla~~ds~~g~k~~i~~~---~~kn~~g~~~~P~~viiDp~~l~tlP~~~~~~G~~e~ik~~~~ 179 (344)
T cd08169 109 GIAFIRVPTTLLAQSDSGVGGKTGINLK---GGKNLLGTFYPPRAVFLDLRFLKTLPPRQILSGVAEIVKVALI 179 (344)
T ss_pred CCcEEEecCCcccccccCccceEeEecC---CCceeecccCCCCEEEEcHHHHhhCCHHHHHhHHHHHHHHHhh
Confidence 46999999984 445666654444432 3444455566799999999999999999999999999998773
No 111
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=98.92 E-value=5.2e-09 Score=112.08 Aligned_cols=69 Identities=16% Similarity=0.013 Sum_probs=59.3
Q ss_pred ccccccccccCCCCCcccceEEEeeCCCC-ceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHH
Q psy2427 371 VKKADAVPTTSGTGSETTGVSIFDYEPLK-AKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL 441 (660)
Q Consensus 371 ~~~~i~vPTt~~tgse~t~~~v~~~~~~~-~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~ 441 (660)
..|+|.|||| ++|++++..+.....+. .|+.+......|+.+++||+++.++|++++.+|..|++=|++
T Consensus 125 Gip~I~IPTT--lla~vDs~~g~k~~vn~~~~knlvg~f~~P~~viiDp~~l~tlP~r~~~~G~aE~iK~~~ 194 (369)
T cd08198 125 GVRLIRIPTT--VLAQNDSGVGVKNGINAFGKKNFLGTFAPPYAVINDFAFLTTLPDRDKRAGLAEAVKVAL 194 (369)
T ss_pred CCCEEEECCC--chhhhCCCeeeeecccCCCCcceeccccCCCEEEEcHHHHhhCCHHHHHhhHHHHHHHHh
Confidence 4799999999 89999987777655443 577777888889999999999999999999999999996655
No 112
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=98.87 E-value=1.1e-08 Score=109.92 Aligned_cols=68 Identities=21% Similarity=0.146 Sum_probs=52.2
Q ss_pred ccccccccccC--CCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHH
Q psy2427 371 VKKADAVPTTS--GTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL 441 (660)
Q Consensus 371 ~~~~i~vPTt~--~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~ 441 (660)
..|+|+||||+ ..+++++....+..+ +.|..+ .....|..+|+||+++.++|++++++|.+|++-+++
T Consensus 114 g~p~i~VPTT~lA~vD~~~g~K~~i~~~--~~kn~i-g~~~~P~~viiD~~~l~tlP~~~~~~G~~e~ik~~~ 183 (354)
T cd08199 114 GTPYVRIPTTLVGLIDAGVGIKTGVNFG--GYKNRL-GAYHPPTLTLLDRSFLATLPERHIRNGLAEIIKMAV 183 (354)
T ss_pred CCCEEEEcCccceeeecCCCCceEEeCC--CCcccc-ccCCCCCEEEEcHHHHhhCCHHHHHhHHHHHHHHHH
Confidence 46999999975 367788866555544 333333 233459999999999999999999999999997654
No 113
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=98.78 E-value=3.3e-09 Score=113.66 Aligned_cols=68 Identities=15% Similarity=0.057 Sum_probs=59.6
Q ss_pred cccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHH
Q psy2427 372 KKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALES 443 (660)
Q Consensus 372 ~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~ 443 (660)
.|.|+||||++||||+|..++++++ +.|....+ ..|+++|+||+++.++|++++++|++|+|+|+.+.
T Consensus 103 ~p~i~iPTT~~t~s~~s~~a~i~~~--~~k~~~~~--~~P~~vi~Dp~l~~tlP~~~~~sg~~Dal~k~~~~ 170 (339)
T cd08173 103 IPFISVPTAASHDGIASPRASIKGN--GKPISIKA--KPPLAVIADTGIIAKAPRRLLAAGCGDIISNYTAV 170 (339)
T ss_pred CCEEEecCcccCCcccCCceEEEeC--CceEEecC--CCCeEEEEcHHHHHhCCHHHHHHhHHHHHhhhHHH
Confidence 6999999999999999999999886 33554433 48999999999999999999999999999996544
No 114
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.75 E-value=4.4e-08 Score=109.27 Aligned_cols=175 Identities=18% Similarity=0.138 Sum_probs=119.6
Q ss_pred cccccccccccC--CCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHH------
Q psy2427 370 RVKKADAVPTTS--GTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL------ 441 (660)
Q Consensus 370 ~~~~~i~vPTt~--~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~------ 441 (660)
...+.|.||||. -.+|.+....-++... .|..+- .-..|..+++||+++.++|++.+.+|.++++-|++
T Consensus 262 RGi~~i~vPTTlla~vDssiggK~~vn~~~--~KNliG-~f~~P~~viiD~~~l~TLp~~~~~~G~aE~iK~~~~~~~~~ 338 (488)
T PRK13951 262 RGVGLSFYPTTLLAQVDASVGGKNAIDFAG--VKNVVG-TFRMPDYVIIDPTVTLSMDEGRFEEGVVEAFKMTILSGRGV 338 (488)
T ss_pred cCCCeEecCccHHHHHhcCCCCCeeeeCCC--CCceee-cCCCCCEEEEchHHhcCCCHHHHHhhHHHHHHHHHhcChhH
Confidence 356999999995 3355555544454442 333332 22349999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhHhhhcccchh
Q psy2427 442 ESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHL 521 (660)
Q Consensus 442 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as~~ag~~~~~~g~~~ 521 (660)
+.| ... .. -.+...+.+.+...+.+...++.+.+|+.+.++|..+-+
T Consensus 339 ~~~-~~~---~~-------------~~~~~~~~~~~~i~~si~~k~~vv~~D~~e~~~R~~LN~---------------- 385 (488)
T PRK13951 339 ELF-DEP---EK-------------IEKRNLRVLSEMVKISVEEKARIVMEDPYDMGLRHALNL---------------- 385 (488)
T ss_pred Hhh-hCh---hh-------------hhcccHHHHHHHHHHHHHHHHHHHccCCcchhHHHHHhc----------------
Confidence 333 210 00 012234556666667777788888899999999985443
Q ss_pred hhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Q psy2427 522 CHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVR 601 (660)
Q Consensus 522 ~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~~~~~~~~~~~~~l~ 601 (660)
.|.++|.|...+ +++||+++++.+...+ .++..+|.... + ..+++.
T Consensus 386 GHTigHalE~~~-------------~i~HG~AVa~gm~~~~------------~~s~~~g~~~~----~-----~~~~i~ 431 (488)
T PRK13951 386 GHTLGHVYEMLE-------------GVPHGIAVAWGIEKET------------MYLYRKGIVPK----E-----TMRWIV 431 (488)
T ss_pred cchHHHHHHhcc-------------CCccHHHHHHHHHHHH------------HHHHHhCCCCH----H-----HHHHHH
Confidence 388888888753 5999999987665443 35555664321 1 246788
Q ss_pred HHHHHcCCCCcccc
Q psy2427 602 GYMDQMKIENGLKV 615 (660)
Q Consensus 602 ~l~~~lglp~~L~e 615 (660)
+++++.+ |+.+.+
T Consensus 432 ~~l~~~~-p~~~~~ 444 (488)
T PRK13951 432 EKVKQIV-PIPVPS 444 (488)
T ss_pred HHHHHhC-CCCCCC
Confidence 8888874 887654
No 115
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.57 E-value=6.2e-07 Score=101.74 Aligned_cols=69 Identities=19% Similarity=0.087 Sum_probs=56.4
Q ss_pred ccccccccccc--CCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHH
Q psy2427 370 RVKKADAVPTT--SGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL 441 (660)
Q Consensus 370 ~~~~~i~vPTt--~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~ 441 (660)
...|.|.|||| |.++|.+.....++....+...+.+. .|..+++|++++.++|.+.+.+|..|.+=|++
T Consensus 294 rGi~~i~vPTTllA~vDss~ggkt~in~~~gkn~ig~f~---~P~~V~iD~~~l~tlP~r~~~aG~gE~iK~~~ 364 (542)
T PRK14021 294 RGIRYVNCPTSLLAMVDASTGGKTGINTPQGKNLVGSFY---TPAGVLADTKTLATLPNDIFIEGLGEVAKSGF 364 (542)
T ss_pred cCCCEEEeCChHHhhhccccCCceEEECCCCceeEeeec---CCCEEEEeHHHHhhCCHHHHHhhHHHHHHHHh
Confidence 34799999996 78899999998888875443333333 59999999999999999999999999976664
No 116
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=98.42 E-value=1.8e-06 Score=92.42 Aligned_cols=68 Identities=19% Similarity=0.026 Sum_probs=50.6
Q ss_pred ccccccccccCC--CCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHH
Q psy2427 371 VKKADAVPTTSG--TGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL 441 (660)
Q Consensus 371 ~~~~i~vPTt~~--tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~ 441 (660)
..|.+.||||.. ..|.....+.++.. +.| -+......|+.+|+||+++.++|++.+.+|..+++=+++
T Consensus 102 gi~~i~iPTTlla~vds~ig~k~~vn~~--~~K-n~ig~f~~P~~viiD~~~l~tlp~~~~~~G~aEiiK~~~ 171 (346)
T cd08196 102 GVSWSFVPTTLLAQVDSCIGSKSSINVG--PYK-NLVGNFYPPREIYIDPPFLSTLDEKEIYSGLGEALKICY 171 (346)
T ss_pred CCCeEEecccHHHhhhccccccceecCC--CCC-cccccCCCCCEEEEchHHhccCCHHHHHhhHHHHHHHHH
Confidence 358899999984 34445555555543 334 345555669999999999999999999999999995544
No 117
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=98.25 E-value=1.1e-05 Score=84.82 Aligned_cols=220 Identities=20% Similarity=0.141 Sum_probs=120.3
Q ss_pred ccccccccccCC--CCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHH---Hh
Q psy2427 371 VKKADAVPTTSG--TGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALES---FT 445 (660)
Q Consensus 371 ~~~~i~vPTt~~--tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~---~~ 445 (660)
..++|.||||.= -+|.+-...-++....+...+.+++ |+.|++||+++.++|+|-+.+|..-.+=|++=. ++
T Consensus 120 Gv~fiqiPTTLLAqVDSSVGGKtgIN~~~gKNmIGaF~q---P~aVi~D~~~L~TLp~re~~~G~AEvIK~g~I~D~~~f 196 (360)
T COG0337 120 GVRFIQIPTTLLAQVDSSVGGKTGINHPLGKNLIGAFYQ---PKAVLIDTDFLKTLPPRELRAGMAEVIKYGLIADPEFF 196 (360)
T ss_pred CCCeEeccchHHHHhhcccccccccCCCCCcceeecccC---CcEEEEchHHhccCCHHHHHHhHHHHHHHhhhcCHHHH
Confidence 468999999852 2444444444554444444444444 999999999999999999999998887665521 11
Q ss_pred cCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHhHhhhcccchhhhh
Q psy2427 446 ALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKR-AVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHG 524 (660)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~-~~~~~~~~~ar~~~~~as~~ag~~~~~~g~~~~H~ 524 (660)
..- +.. ...+...++ . ..++|+.-++.-.+ ...|+.+...|.- =|-|-.+.|+
T Consensus 197 ~~L-------e~~---~~~l~~~~~---~-l~~~I~rs~~~Ka~VV~~De~E~G~R~~------------LN~GHT~GHA 250 (360)
T COG0337 197 DWL-------EEN---LDALLALDP---A-LEELIARSCQIKAEVVAQDEKESGLRAI------------LNLGHTFGHA 250 (360)
T ss_pred HHH-------HHH---HHHHHhcch---H-HHHHHHHHHHHhhHHhhcCccchhhHHH------------HhcchHHHHH
Confidence 100 000 000000001 0 11222222222112 2244444333332 2335556666
Q ss_pred hhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHH
Q psy2427 525 LSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYM 604 (660)
Q Consensus 525 l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~~~~~~~~~~~~~l~~l~ 604 (660)
++...+ |+ .++||+++++-+- + -.++++.+|.-.. . .++++++++
T Consensus 251 iE~~~~----------y~----~~~HGeAVaiGmv--~----------aa~ls~~lG~~~~----~-----~~~r~~~~L 295 (360)
T COG0337 251 IEALTG----------YG----KWLHGEAVAIGMV--M----------AARLSERLGLLDK----A-----DAERILNLL 295 (360)
T ss_pred HHHHhC----------CC----ccchHHHHHHHHH--H----------HHHHHHHhcCCCH----H-----HHHHHHHHH
Confidence 655333 21 3999988885442 2 2456777875322 1 268999999
Q ss_pred HHcCCCCcccccCCCCCcHHHHHHhhccCC-------------CCCCCCCcc-CCHHHHHHHHHHHhh
Q psy2427 605 DQMKIENGLKVLGYTSADIPALVTGTLPQH-------------RITKLAPRE-QSEEDLANLFENSMS 658 (660)
Q Consensus 605 ~~lglp~~L~elGi~~~~i~~ia~~a~~~~-------------~~~~~~P~~-~t~e~i~~il~~a~~ 658 (660)
++.|+|+++.+ ++ +.+.+.+....++ .+-+..... ++.+++.+.++....
T Consensus 296 ~~~gLP~~~~~-~~---~~~~l~~~m~~DKK~~~g~i~~vl~~~iG~~~~~~~v~~~~l~~~l~~~~~ 359 (360)
T COG0337 296 KRYGLPTSLPD-EL---DAEKLLEAMARDKKVLGGKIRFVLLKEIGKAEIAEGVDEELLLDALEEVHA 359 (360)
T ss_pred HHcCCCccCCC-cC---CHHHHHHHHhhcccccCCceEEEeehhcCceEeecCCCHHHHHHHHHHHhc
Confidence 99999999987 22 3333333322121 111111233 889999999887654
No 118
>PF01761 DHQ_synthase: 3-dehydroquinate synthase; PDB: 3OKF_A 1NVA_B 1NUA_A 1NVE_D 1NVB_B 1SG6_A 1NR5_A 1NRX_B 1NVD_A 1NVF_C ....
Probab=97.72 E-value=8.8e-05 Score=75.98 Aligned_cols=69 Identities=28% Similarity=0.218 Sum_probs=47.9
Q ss_pred cccccccccccC--CCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHH
Q psy2427 370 RVKKADAVPTTS--GTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL 441 (660)
Q Consensus 370 ~~~~~i~vPTt~--~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~ 441 (660)
...|.+.||||. -.+|.+..-.-++....+.-.+.+++ |+.|++||+++.++|++...+|..-++-|++
T Consensus 54 RGi~~i~vPTTLLa~vDssiGgK~~vN~~~~KN~iG~f~~---P~~V~iD~~~l~tL~~~e~~~G~aEiiK~a~ 124 (260)
T PF01761_consen 54 RGIPFIQVPTTLLAQVDSSIGGKTGVNFPGGKNLIGTFYQ---PEAVLIDPSFLKTLPPREIRSGLAEIIKYAL 124 (260)
T ss_dssp T--EEEEEE-SHHHHHTTTSSSEEEEEETTEEEEEEEE------SEEEEEGGGGGGS-HHHHHHHHHHHHHHHH
T ss_pred cCCceEeccccHHHHHhcccCCCeeeeCCCCCCcccccCC---CceeEEcHHHHhhccHHHHHhCHHHHHHHHH
Confidence 356899999984 33566666666666544444444444 9999999999999999999999999888876
No 119
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=96.84 E-value=0.0074 Score=56.31 Aligned_cols=90 Identities=22% Similarity=0.303 Sum_probs=68.2
Q ss_pred EEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhc
Q psy2427 52 RVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYC 131 (660)
Q Consensus 52 r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~ 131 (660)
++.||++.... ....+++...|++-|+.+.+ .-...+-+.+.+.+.++.+++.++|+||++-|++. -+...++....
T Consensus 2 ~V~Ii~gs~SD-~~~~~~a~~~L~~~gi~~~~-~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a-~Lpgvva~~t~ 78 (150)
T PF00731_consen 2 KVAIIMGSTSD-LPIAEEAAKTLEEFGIPYEV-RVASAHRTPERLLEFVKEYEARGADVIIAVAGMSA-ALPGVVASLTT 78 (150)
T ss_dssp EEEEEESSGGG-HHHHHHHHHHHHHTT-EEEE-EE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS---HHHHHHHHSS
T ss_pred eEEEEeCCHHH-HHHHHHHHHHHHHcCCCEEE-EEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcc-cchhhheeccC
Confidence 67888887643 34669999999999998874 55678999999999999999889999999999854 46777776664
Q ss_pred CCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcC
Q psy2427 132 DPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTG 168 (660)
Q Consensus 132 ~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtg 168 (660)
+|+|.||+..+..
T Consensus 79 ------------------------~PVIgvP~~~~~~ 91 (150)
T PF00731_consen 79 ------------------------LPVIGVPVSSGYL 91 (150)
T ss_dssp ------------------------S-EEEEEE-STTT
T ss_pred ------------------------CCEEEeecCcccc
Confidence 8999999987643
No 120
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=96.38 E-value=0.021 Score=53.39 Aligned_cols=86 Identities=23% Similarity=0.297 Sum_probs=66.9
Q ss_pred EEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCC
Q psy2427 54 CVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDP 133 (660)
Q Consensus 54 liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~ 133 (660)
.||++... +....++....|++-|+++.+ .-...|-+.+.+.+.++.+++.++++||++.|++. -+...++....
T Consensus 2 ~IimGS~S-D~~~~~~a~~~L~~~gi~~dv-~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa-~Lpgvva~~t~-- 76 (156)
T TIGR01162 2 GIIMGSDS-DLPTMKKAADILEEFGIPYEL-RVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAA-HLPGMVAALTP-- 76 (156)
T ss_pred EEEECcHh-hHHHHHHHHHHHHHcCCCeEE-EEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccc-hhHHHHHhccC--
Confidence 46666543 233568899999999998763 45677999999999999999999999999999965 35566655443
Q ss_pred CcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCC
Q psy2427 134 EAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSG 166 (660)
Q Consensus 134 ~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~g 166 (660)
+|+|.||+..+
T Consensus 77 ----------------------~PVIgvP~~~~ 87 (156)
T TIGR01162 77 ----------------------LPVIGVPVPSK 87 (156)
T ss_pred ----------------------CCEEEecCCcc
Confidence 89999999764
No 121
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=95.17 E-value=0.11 Score=47.91 Aligned_cols=86 Identities=20% Similarity=0.267 Sum_probs=68.1
Q ss_pred EEEEEECccc-cccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHh
Q psy2427 52 RVCVMTDPHL-SKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYY 130 (660)
Q Consensus 52 r~liVtd~~~-~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~ 130 (660)
++.||-+... |+ ..++..+.|++-|+.+.+ .-+..|-|.+.+.+.++.+++.+.++|||.-||+ -.+-+++|...
T Consensus 4 ~V~IIMGS~SD~~--~mk~Aa~~L~~fgi~ye~-~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgA-AHLPGmvAa~T 79 (162)
T COG0041 4 KVGIIMGSKSDWD--TMKKAAEILEEFGVPYEV-RVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGA-AHLPGMVAAKT 79 (162)
T ss_pred eEEEEecCcchHH--HHHHHHHHHHHcCCCeEE-EEEeccCCHHHHHHHHHHHHHCCCeEEEecCcch-hhcchhhhhcC
Confidence 5666666543 33 347788889999999875 4577899999999999999999999999999994 45677776655
Q ss_pred cCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC
Q psy2427 131 CDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS 165 (660)
Q Consensus 131 ~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~ 165 (660)
. +|+|.||--.
T Consensus 80 ~------------------------lPViGVPv~s 90 (162)
T COG0041 80 P------------------------LPVIGVPVQS 90 (162)
T ss_pred C------------------------CCeEeccCcc
Confidence 3 8999999874
No 122
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=92.60 E-value=1.2 Score=50.15 Aligned_cols=108 Identities=14% Similarity=0.202 Sum_probs=66.7
Q ss_pred HHHHHHHHhcC-CCEEEEEECccccc-c--c-hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE
Q psy2427 39 REVGMDMVNMK-AQRVCVMTDPHLSK-L--A-PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA 113 (660)
Q Consensus 39 ~~l~~~l~~~g-~~r~liVtd~~~~~-~--~-~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa 113 (660)
+.+.+++..++ .+|++||..|..-+ . . +.+++.+.|++.++++.++.-- . .....+.++.+...+.|.||+
T Consensus 99 ~~~~~~~~~~~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~--~--~ghA~~la~~~~~~~~D~VV~ 174 (481)
T PLN02958 99 QKLRDYLDSLGRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETK--Y--QLHAKEVVRTMDLSKYDGIVC 174 (481)
T ss_pred HHHHHHHhhccCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEecc--C--ccHHHHHHHHhhhcCCCEEEE
Confidence 34556665543 37899998875432 1 1 2246778999999988765321 1 234455555555567899999
Q ss_pred ecC-chhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcC
Q psy2427 114 VGG-GSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTG 168 (660)
Q Consensus 114 vGG-GsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtg 168 (660)
+|| |++-.+.-.+. .+++ + .....+|+..||.=.+.+
T Consensus 175 vGGDGTlnEVvNGL~---~~~~---~------------~~~~~~pLGiIPaGTgNd 212 (481)
T PLN02958 175 VSGDGILVEVVNGLL---ERED---W------------KTAIKLPIGMVPAGTGNG 212 (481)
T ss_pred EcCCCHHHHHHHHHh---hCcc---c------------cccccCceEEecCcCcch
Confidence 999 88877776553 2110 0 001127999999766555
No 123
>PRK13054 lipid kinase; Reviewed
Probab=92.41 E-value=0.89 Score=47.85 Aligned_cols=72 Identities=11% Similarity=0.137 Sum_probs=47.3
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAA 126 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~ 126 (660)
+|+++|..+.......+.++.+.|.+.|+++.++.-- ......+.++.+...+.|.||++|| |++..++-.+
T Consensus 4 ~~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t~----~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~evv~~l 76 (300)
T PRK13054 4 PKSLLILNGKSAGNEELREAVGLLREEGHTLHVRVTW----EKGDAARYVEEALALGVATVIAGGGDGTINEVATAL 76 (300)
T ss_pred ceEEEEECCCccchHHHHHHHHHHHHcCCEEEEEEec----CCCcHHHHHHHHHHcCCCEEEEECCccHHHHHHHHH
Confidence 6788888766433334577888899999987754321 1122344555555567899999999 7777666554
No 124
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=92.39 E-value=0.91 Score=50.54 Aligned_cols=71 Identities=27% Similarity=0.365 Sum_probs=52.7
Q ss_pred CCEEEEEECccccccchHHHHHHHHHhCC--CeEEEEeC-cccCCCHHHHHHHHHHhHhcCCC-EEEEecCchhhhHH
Q psy2427 50 AQRVCVMTDPHLSKLAPVKATLDSLTRHG--VKFELFDK-VRVEPTGDSFLEATKFVRSVQCD-AFIAVGGGSVIDTC 123 (660)
Q Consensus 50 ~~r~liVtd~~~~~~~~~~~i~~~L~~~g--i~~~~~~~-~~~~p~~~~v~~~~~~~~~~~~D-~IIavGGGsviD~A 123 (660)
.+|+.|||+++... +.++...+.+.. +++.+|+- +.++-...+|.++.+.+...++| .||+=||||.-|+.
T Consensus 135 p~~I~viTs~~gAa---~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~ 209 (438)
T PRK00286 135 PKRIGVITSPTGAA---IRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGSLEDLW 209 (438)
T ss_pred CCEEEEEeCCccHH---HHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCHHHhh
Confidence 36899999998643 367777777653 56777754 56676778888888887776678 66788999999984
No 125
>PRK13055 putative lipid kinase; Reviewed
Probab=92.25 E-value=0.84 Score=48.87 Aligned_cols=73 Identities=23% Similarity=0.361 Sum_probs=48.2
Q ss_pred CEEEEEECccccc---cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHH
Q psy2427 51 QRVCVMTDPHLSK---LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAA 126 (660)
Q Consensus 51 ~r~liVtd~~~~~---~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~ 126 (660)
+|++||..+..-. ...++++.+.|++.|+++.++.-. +......++++.+.+.++|.||++|| |++-.++..+
T Consensus 3 ~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~---~~~~~a~~~~~~~~~~~~d~vvv~GGDGTl~evvngl 79 (334)
T PRK13055 3 KRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTT---PEPNSAKNEAKRAAEAGFDLIIAAGGDGTINEVVNGI 79 (334)
T ss_pred ceEEEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEee---cCCccHHHHHHHHhhcCCCEEEEECCCCHHHHHHHHH
Confidence 6888998876432 123477889999999987765321 12223345555555667899999999 6666666544
No 126
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=91.93 E-value=1.3 Score=49.05 Aligned_cols=72 Identities=26% Similarity=0.422 Sum_probs=53.3
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCC--CeEEEEeC-cccCCCHHHHHHHHHHhHhc-CCC-EEEEecCchhhhHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHG--VKFELFDK-VRVEPTGDSFLEATKFVRSV-QCD-AFIAVGGGSVIDTCKA 125 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~g--i~~~~~~~-~~~~p~~~~v~~~~~~~~~~-~~D-~IIavGGGsviD~AK~ 125 (660)
+|+-|||++... .+.++...+++.. +++.+|+. +.++-...+|-++++.+... ++| .||+=||||.-|+.=|
T Consensus 130 ~~i~vits~~~a---a~~D~~~~~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~F 206 (432)
T TIGR00237 130 KRVGVITSQTGA---ALADILHILKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGSLEDLWSF 206 (432)
T ss_pred CEEEEEeCCccH---HHHHHHHHHHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhc
Confidence 689999998864 3477888887664 56777753 66677778888888777653 367 6778899999998643
No 127
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=91.76 E-value=0.77 Score=52.87 Aligned_cols=89 Identities=19% Similarity=0.271 Sum_probs=71.5
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHh
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYY 130 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~ 130 (660)
.++.||++.... ....++....|++-|+++.+ .-...|-+.+.+.+.++.+++.++++||++=|++. -+...+|...
T Consensus 411 ~~v~i~~gs~sd-~~~~~~~~~~l~~~g~~~~~-~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~-~l~~~~a~~t 487 (577)
T PLN02948 411 PLVGIIMGSDSD-LPTMKDAAEILDSFGVPYEV-TIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAA-HLPGMVASMT 487 (577)
T ss_pred CeEEEEECchhh-HHHHHHHHHHHHHcCCCeEE-EEECCccCHHHHHHHHHHHHHCCCCEEEEEcCccc-cchHHHhhcc
Confidence 468888886643 34568899999999999773 55678999999999999999999999999988865 4666666555
Q ss_pred cCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCC
Q psy2427 131 CDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSG 166 (660)
Q Consensus 131 ~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~g 166 (660)
. +|+|.||+..|
T Consensus 488 ~------------------------~pvi~vp~~~~ 499 (577)
T PLN02948 488 P------------------------LPVIGVPVKTS 499 (577)
T ss_pred C------------------------CCEEEcCCCCC
Confidence 4 89999999764
No 128
>PRK13337 putative lipid kinase; Reviewed
Probab=91.54 E-value=1.2 Score=47.07 Aligned_cols=73 Identities=16% Similarity=0.232 Sum_probs=49.3
Q ss_pred CEEEEEECcccccc---chHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHH
Q psy2427 51 QRVCVMTDPHLSKL---APVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAA 126 (660)
Q Consensus 51 ~r~liVtd~~~~~~---~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~ 126 (660)
+|+++|..+..-.. ..+.++.+.|++.++++.++.- + ......++++.+.+.+.|.||++|| |++-+++..+
T Consensus 2 ~r~~~I~Np~aG~~~~~~~~~~~~~~l~~~~~~~~~~~t-~---~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~~vv~gl 77 (304)
T PRK13337 2 KRARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHAT-T---GPGDATLAAERAVERKFDLVIAAGGDGTLNEVVNGI 77 (304)
T ss_pred ceEEEEECCcccchhHHHHHHHHHHHHHHcCCEEEEEEe-c---CCCCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHH
Confidence 68888888764321 1346788889999998776532 1 2244455555555677899999999 7777777665
Q ss_pred H
Q psy2427 127 N 127 (660)
Q Consensus 127 a 127 (660)
.
T Consensus 78 ~ 78 (304)
T PRK13337 78 A 78 (304)
T ss_pred h
Confidence 3
No 129
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=91.38 E-value=1.1 Score=40.86 Aligned_cols=71 Identities=17% Similarity=0.306 Sum_probs=42.0
Q ss_pred EEEEEECccccccch-HHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC-CCEEEEecC-chhhhHHHHH
Q psy2427 52 RVCVMTDPHLSKLAP-VKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ-CDAFIAVGG-GSVIDTCKAA 126 (660)
Q Consensus 52 r~liVtd~~~~~~~~-~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~-~D~IIavGG-GsviD~AK~~ 126 (660)
|++||.++..-.... ++++.+.|...+..+.++.- +. .+...++.......+ .|.||++|| |++.++...+
T Consensus 1 k~~vi~Np~sG~~~~~~~~v~~~l~~~~~~~~~~~t-~~---~~~~~~~~~~~~~~~~~~~ivv~GGDGTl~~vv~~l 74 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAKWKKVEPALRAAGIDYEVIET-ES---AGHAEALARILALDDYPDVIVVVGGDGTLNEVVNGL 74 (130)
T ss_dssp SEEEEEETTSTTSHHHHHHHHHHHHHTTCEEEEEEE-SS---TTHHHHHHHHHHHTTS-SEEEEEESHHHHHHHHHHH
T ss_pred CEEEEECCCCCCCchhHHHHHHHHHHcCCceEEEEE-ec---cchHHHHHHHHhhccCccEEEEEcCccHHHHHHHHH
Confidence 567787776433211 36889999999988776543 22 222233333233333 489999999 6666665544
No 130
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=91.06 E-value=1.1 Score=47.55 Aligned_cols=72 Identities=28% Similarity=0.419 Sum_probs=54.2
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCC--CeEEEEe-CcccCCCHHHHHHHHHHhHhcC----CC-EEEEecCchhhhH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHG--VKFELFD-KVRVEPTGDSFLEATKFVRSVQ----CD-AFIAVGGGSVIDT 122 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~g--i~~~~~~-~~~~~p~~~~v~~~~~~~~~~~----~D-~IIavGGGsviD~ 122 (660)
+|+-|||+++.. .+.++...+++.+ +++.+|+ .+.++-...+|.++.+.+.+.+ +| .||+=||||.-|+
T Consensus 15 ~~I~vITs~~gA---a~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL 91 (319)
T PF02601_consen 15 KRIAVITSPTGA---AIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDL 91 (319)
T ss_pred CEEEEEeCCchH---HHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHh
Confidence 799999998864 3367777777654 4566665 4667777888888888887654 78 5677899999998
Q ss_pred HHH
Q psy2427 123 CKA 125 (660)
Q Consensus 123 AK~ 125 (660)
.-|
T Consensus 92 ~~F 94 (319)
T PF02601_consen 92 WAF 94 (319)
T ss_pred ccc
Confidence 753
No 131
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=90.95 E-value=1.3 Score=46.39 Aligned_cols=73 Identities=18% Similarity=0.253 Sum_probs=48.6
Q ss_pred CEEEEEECccccc---cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHH
Q psy2427 51 QRVCVMTDPHLSK---LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAA 126 (660)
Q Consensus 51 ~r~liVtd~~~~~---~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~ 126 (660)
+|++||..+..-. ....+++.+.|++.|+++.++...... ... +.++.+.+.++|+||++|| |++..++..+
T Consensus 2 ~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~-~~~---~~~~~~~~~~~d~ivv~GGDGTl~~v~~~l 77 (293)
T TIGR00147 2 AEAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTWEKG-DAA---RYVEEARKFGVDTVIAGGGDGTINEVVNAL 77 (293)
T ss_pred ceEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEecCcc-cHH---HHHHHHHhcCCCEEEEECCCChHHHHHHHH
Confidence 6888998884322 224578889999999988765432211 222 2333444567899999999 8888888766
Q ss_pred H
Q psy2427 127 N 127 (660)
Q Consensus 127 a 127 (660)
.
T Consensus 78 ~ 78 (293)
T TIGR00147 78 I 78 (293)
T ss_pred h
Confidence 3
No 132
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=90.55 E-value=1.4 Score=48.05 Aligned_cols=71 Identities=25% Similarity=0.419 Sum_probs=54.9
Q ss_pred CEEEEEECccccccchHHHHHHHHHhC--CCeEEEEe-CcccCCCHHHHHHHHHHhHhcC-CC-EEEEecCchhhhHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRH--GVKFELFD-KVRVEPTGDSFLEATKFVRSVQ-CD-AFIAVGGGSVIDTCK 124 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~--gi~~~~~~-~~~~~p~~~~v~~~~~~~~~~~-~D-~IIavGGGsviD~AK 124 (660)
+++-|||++... .+.+|...+++. .+++.+|+ .+.++-....|-++++.+.+.+ +| .|||=||||+=|+--
T Consensus 136 ~~IGVITS~tgA---airDIl~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~ 211 (440)
T COG1570 136 KKIGVITSPTGA---ALRDILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWA 211 (440)
T ss_pred CeEEEEcCCchH---HHHHHHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhc
Confidence 679999999854 346777777765 36777775 4677778888888888888766 88 678899999999754
No 133
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=90.26 E-value=2.6 Score=44.92 Aligned_cols=91 Identities=10% Similarity=0.072 Sum_probs=66.2
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
..+.+.+..+|.+|+.+|+..........+.+.+.+++.|+++.....+....+..+....+..++..++|.||..+.+.
T Consensus 124 ~a~~~~~~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~dvvi~~~~~~ 203 (350)
T cd06366 124 PAIAALLKKFGWRRVATIYEDDDYGSGGLPDLVDALQEAGIEISYRAAFPPSANDDDITDALKKLKEKDSRVIVVHFSPD 203 (350)
T ss_pred HHHHHHHHHCCCcEEEEEEEcCcccchhHHHHHHHHHHcCCEEEEEeccCCCCChhHHHHHHHHHhcCCCeEEEEECChH
Confidence 34666777788899999987665544566889999999999876443343333367888888888888999999887766
Q ss_pred hhhHHHHHHhHhc
Q psy2427 119 VIDTCKAANLYYC 131 (660)
Q Consensus 119 viD~AK~~a~~~~ 131 (660)
|...++.....
T Consensus 204 --~~~~~~~~a~~ 214 (350)
T cd06366 204 --LARRVFCEAYK 214 (350)
T ss_pred --HHHHHHHHHHH
Confidence 66666654443
No 134
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=90.24 E-value=2.2 Score=45.28 Aligned_cols=90 Identities=10% Similarity=0.088 Sum_probs=67.1
Q ss_pred HHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchh
Q psy2427 40 EVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSV 119 (660)
Q Consensus 40 ~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 119 (660)
.+.++++.+|.+|+.+|++...+.....+.+.+.+++.|+++.....+....+..+....++.++..++|+||..+.+
T Consensus 150 a~~~~~~~~~~~~v~~l~~~~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vvv~~~~~-- 227 (348)
T cd06350 150 AIVALLKHFGWTWVGLVYSDDDYGRSGLSDLEEELEKNGICIAFVEAIPPSSTEEDIKRILKKLKSSTARVIVVFGDE-- 227 (348)
T ss_pred HHHHHHHHCCCeEEEEEEecchhHHHHHHHHHHHHHHCCCcEEEEEEccCCCcHHHHHHHHHHHHhCCCcEEEEEeCc--
Confidence 356677788889999998776555556688999999999887643344433346788899999999999999999877
Q ss_pred hhHHHHHHhHhc
Q psy2427 120 IDTCKAANLYYC 131 (660)
Q Consensus 120 iD~AK~~a~~~~ 131 (660)
-|+..++.....
T Consensus 228 ~~~~~~~~~a~~ 239 (348)
T cd06350 228 DDALRLFCEAYK 239 (348)
T ss_pred HHHHHHHHHHHH
Confidence 466666655444
No 135
>PRK11914 diacylglycerol kinase; Reviewed
Probab=90.13 E-value=2.9 Score=44.04 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=53.4
Q ss_pred HhcCCCEEEEEECccccc---cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhh
Q psy2427 46 VNMKAQRVCVMTDPHLSK---LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVID 121 (660)
Q Consensus 46 ~~~g~~r~liVtd~~~~~---~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD 121 (660)
++.-.+|+++|..+..-. ....+++.+.|++.|+++.++.. .......+.++.+.+.++|.||++|| |++-.
T Consensus 4 ~~~~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t----~~~~~~~~~a~~~~~~~~d~vvv~GGDGTi~e 79 (306)
T PRK11914 4 RRHEIGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVG----TDAHDARHLVAAALAKGTDALVVVGGDGVISN 79 (306)
T ss_pred CcCCCceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEe----CCHHHHHHHHHHHHhcCCCEEEEECCchHHHH
Confidence 444558999999876422 12456888999999998776532 22456777777777788999999999 56555
Q ss_pred HHHH
Q psy2427 122 TCKA 125 (660)
Q Consensus 122 ~AK~ 125 (660)
++..
T Consensus 80 vv~~ 83 (306)
T PRK11914 80 ALQV 83 (306)
T ss_pred HhHH
Confidence 5443
No 136
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=90.04 E-value=0.13 Score=53.89 Aligned_cols=76 Identities=13% Similarity=0.204 Sum_probs=47.8
Q ss_pred EEEEEECccccc-cchHHHHHHHHHhC-CCeEEEEeCcccC--------CCHH----------HHHHHHHHhHhcCCCEE
Q psy2427 52 RVCVMTDPHLSK-LAPVKATLDSLTRH-GVKFELFDKVRVE--------PTGD----------SFLEATKFVRSVQCDAF 111 (660)
Q Consensus 52 r~liVtd~~~~~-~~~~~~i~~~L~~~-gi~~~~~~~~~~~--------p~~~----------~v~~~~~~~~~~~~D~I 111 (660)
|+.||+.+.-.+ .....++.+.|.+. ++.+.....+... .... ............++|+|
T Consensus 1 kVgii~np~~~~~~~~~~~~~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~i 80 (285)
T PF01513_consen 1 KVGIIANPNKPEAIELANELARWLLEKQGIEVLVEGSIAEDILEAIKKRYEVISVEKKLKTLDDTRNALEEMLEEGVDLI 80 (285)
T ss_dssp -EEEEESSCGHCCCHHHHHHHHHHHHTTTEEEEEEHHHHHSHCCCSHSCCCCCTTSHCCCCTCEEEECCHHHHCCCSSEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHHHhCCCEEEEEChHHHHHHHHhccccccccccccccccccccchhhhhhcccCCCEE
Confidence 567888776332 34568888888888 6555543322111 0000 12233455566799999
Q ss_pred EEecC-chhhhHHHHHH
Q psy2427 112 IAVGG-GSVIDTCKAAN 127 (660)
Q Consensus 112 IavGG-GsviD~AK~~a 127 (660)
|.+|| |+.++++|.+.
T Consensus 81 i~lGGDGT~L~~~~~~~ 97 (285)
T PF01513_consen 81 IVLGGDGTFLRAARLFG 97 (285)
T ss_dssp EEEESHHHHHHHHHHCT
T ss_pred EEECCCHHHHHHHHHhc
Confidence 99999 99999999764
No 137
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=89.51 E-value=1.8 Score=45.28 Aligned_cols=70 Identities=13% Similarity=0.177 Sum_probs=43.1
Q ss_pred EEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHH
Q psy2427 53 VCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAA 126 (660)
Q Consensus 53 ~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~ 126 (660)
+++|..+.......+.++++.|++.|+++.++. .+. .....++++.+.+.+.|.||++|| |++-.++-.+
T Consensus 2 ~~~I~N~~~~~~~~~~~~~~~l~~~g~~~~v~~-t~~---~~~a~~~a~~~~~~~~d~vv~~GGDGTi~ev~ngl 72 (293)
T TIGR03702 2 ALLILNGKQADNEDVREAVGDLRDEGIQLHVRV-TWE---KGDAQRYVAEALALGVSTVIAGGGDGTLREVATAL 72 (293)
T ss_pred EEEEEeCCccchhHHHHHHHHHHHCCCeEEEEE-ecC---CCCHHHHHHHHHHcCCCEEEEEcCChHHHHHHHHH
Confidence 445555443222245778888999999887652 111 122334455555667899999999 7766666544
No 138
>PRK13059 putative lipid kinase; Reviewed
Probab=89.45 E-value=2 Score=45.04 Aligned_cols=71 Identities=13% Similarity=0.141 Sum_probs=45.3
Q ss_pred CEEEEEECccccc---cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHH
Q psy2427 51 QRVCVMTDPHLSK---LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAA 126 (660)
Q Consensus 51 ~r~liVtd~~~~~---~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~ 126 (660)
+|+++|..+..-. ...++++++.|.+.|+++.++.-... . ..+.+. .+.+.++|.||++|| |++-.++..+
T Consensus 2 ~~~~~I~NP~aG~g~~~~~~~~i~~~l~~~g~~~~~~~~~~~-~---~~~~~~-~~~~~~~d~vi~~GGDGTv~evv~gl 76 (295)
T PRK13059 2 KKVKFIYNPYSGENAIISELDKVIRIHQEKGYLVVPYRISLE-Y---DLKNAF-KDIDESYKYILIAGGDGTVDNVVNAM 76 (295)
T ss_pred cEEEEEECCcccchhHHHHHHHHHHHHHHCCcEEEEEEccCc-c---hHHHHH-HHhhcCCCEEEEECCccHHHHHHHHH
Confidence 5788888876422 12347788899999998776543222 1 223333 333567899999999 6666665544
No 139
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=87.23 E-value=3.5 Score=43.24 Aligned_cols=89 Identities=10% Similarity=-0.025 Sum_probs=64.0
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
..+.+++.+.|.+|+.+++....+.....+.+.+.+++.|+++.--..+ .+...+....+..+++.++|+|+-.+.+.
T Consensus 126 ~~l~~~~~~~~~~~vail~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~--~~~~~d~~~~v~~l~~~~pd~v~~~~~~~ 203 (312)
T cd06346 126 QALAQLAAERGYKSVATTYINNDYGVGLADAFTKAFEALGGTVTNVVAH--EEGKSSYSSEVAAAAAGGPDALVVIGYPE 203 (312)
T ss_pred HHHHHHHHHcCCCeEEEEEccCchhhHHHHHHHHHHHHcCCEEEEEEee--CCCCCCHHHHHHHHHhcCCCEEEEecccc
Confidence 3366777778889999999877665556688899999999987632223 33455666778888889999998876655
Q ss_pred hhhHHHHHHhHhc
Q psy2427 119 VIDTCKAANLYYC 131 (660)
Q Consensus 119 viD~AK~~a~~~~ 131 (660)
|.+.++.....
T Consensus 204 --~~~~~~~~~~~ 214 (312)
T cd06346 204 --TGSGILRSAYE 214 (312)
T ss_pred --hHHHHHHHHHH
Confidence 67776654443
No 140
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.97 E-value=1.6 Score=45.92 Aligned_cols=76 Identities=20% Similarity=0.313 Sum_probs=44.4
Q ss_pred CCEEEEEECccccc-cchHHHHHHHHHhCCCeEEEEeCcccC-CCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHH
Q psy2427 50 AQRVCVMTDPHLSK-LAPVKATLDSLTRHGVKFELFDKVRVE-PTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAA 126 (660)
Q Consensus 50 ~~r~liVtd~~~~~-~~~~~~i~~~L~~~gi~~~~~~~~~~~-p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~ 126 (660)
.+++.||..+.-.. ....+++.+.|++.|+++.+....... +.. ............++|+||++|| |+++.+++..
T Consensus 4 ~~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~-~~~~~~~~~~~~~~d~vi~~GGDGt~l~~~~~~ 82 (295)
T PRK01231 4 FRNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGH-GLQTVSRKLLGEVCDLVIVVGGDGSLLGAARAL 82 (295)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcc-cccccchhhcccCCCEEEEEeCcHHHHHHHHHh
Confidence 36788887654322 235578888899999998765421100 000 0000001112236899999999 7788777654
No 141
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=86.78 E-value=6.3 Score=41.63 Aligned_cols=82 Identities=20% Similarity=0.224 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCCC-EEEEEECccccccchHHHHHHHHHhCCCe--EEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEe
Q psy2427 38 TREVGMDMVNMKAQ-RVCVMTDPHLSKLAPVKATLDSLTRHGVK--FELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAV 114 (660)
Q Consensus 38 ~~~l~~~l~~~g~~-r~liVtd~~~~~~~~~~~i~~~L~~~gi~--~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIav 114 (660)
...+-.+|++++.. ..-++|.+....- .. +...++. +..|...-+..|.++-..+++.+.+.++|.|+-+
T Consensus 35 ~~~v~rfL~~l~~~~~~~flt~p~~mG~----~~---~~~~~~~~~v~~~~~~~~~tTa~DT~~~~r~~~~~gVdlIvfa 107 (355)
T COG3199 35 IVRVKRFLKKLDANGDVEFLTPPGPMGE----SL---AEASGFKYRVIRFQESTPRTTAEDTINAVRRMVERGVDLIVFA 107 (355)
T ss_pred HHHHHHHHHhccccCceEEEeCCcccch----hH---HHhhcCcceEEeecccCCCccHHHHHHHHHHHHhcCceEEEEe
Confidence 34455667776632 4666776664322 11 1122333 3335665566788888889999999999999999
Q ss_pred cC-chhhhHHHHH
Q psy2427 115 GG-GSVIDTCKAA 126 (660)
Q Consensus 115 GG-GsviD~AK~~ 126 (660)
|| |++-|+++++
T Consensus 108 GGDGTarDVa~av 120 (355)
T COG3199 108 GGDGTARDVAEAV 120 (355)
T ss_pred CCCccHHHHHhhc
Confidence 98 8888888877
No 142
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=86.29 E-value=1.9 Score=45.27 Aligned_cols=79 Identities=11% Similarity=0.168 Sum_probs=45.6
Q ss_pred CCCEEEEEECccccc-cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHH
Q psy2427 49 KAQRVCVMTDPHLSK-LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAA 126 (660)
Q Consensus 49 g~~r~liVtd~~~~~-~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~ 126 (660)
..+++.|+....-.+ ....+++.+.|++.|+++.+.......................++|+||++|| |+++.+++..
T Consensus 4 ~~~~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGt~l~~~~~~ 83 (291)
T PRK02155 4 QFKTVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGDGTMLGIGRQL 83 (291)
T ss_pred cCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCcHHHHHHHHHh
Confidence 346788887654322 23568888899999998776432111100000000000111236899999999 8888877765
Q ss_pred H
Q psy2427 127 N 127 (660)
Q Consensus 127 a 127 (660)
.
T Consensus 84 ~ 84 (291)
T PRK02155 84 A 84 (291)
T ss_pred c
Confidence 3
No 143
>PRK13057 putative lipid kinase; Reviewed
Probab=84.76 E-value=6.5 Score=40.98 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=38.2
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHH
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAA 126 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~ 126 (660)
..+++.+.|++.|+++.++.. .......++++.+ ..++|.||++|| |++-.++..+
T Consensus 14 ~~~~i~~~l~~~g~~~~~~~t----~~~~~a~~~~~~~-~~~~d~iiv~GGDGTv~~v~~~l 70 (287)
T PRK13057 14 ALAAARAALEAAGLELVEPPA----EDPDDLSEVIEAY-ADGVDLVIVGGGDGTLNAAAPAL 70 (287)
T ss_pred hHHHHHHHHHHcCCeEEEEec----CCHHHHHHHHHHH-HcCCCEEEEECchHHHHHHHHHH
Confidence 458899999999998775532 2344455555553 457899999999 6666665544
No 144
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=84.45 E-value=4.3 Score=44.34 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=56.6
Q ss_pred ECcChHH---HHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCC
Q psy2427 33 IGPGVTR---EVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCD 109 (660)
Q Consensus 33 ~G~g~~~---~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D 109 (660)
.|.|-.. +|+.++++.| +|+++|+-...+. +.++++...-++.++.+ |.......+.+.+.++++.+++.++|
T Consensus 109 QGsGKTTt~~KLA~~lkk~~-~kvllVaaD~~Rp-AA~eQL~~La~q~~v~~--f~~~~~~~Pv~Iak~al~~ak~~~~D 184 (451)
T COG0541 109 QGSGKTTTAGKLAKYLKKKG-KKVLLVAADTYRP-AAIEQLKQLAEQVGVPF--FGSGTEKDPVEIAKAALEKAKEEGYD 184 (451)
T ss_pred cCCChHhHHHHHHHHHHHcC-CceEEEecccCCh-HHHHHHHHHHHHcCCce--ecCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 4888654 4778888877 7888887654443 45688888887777664 55533455677889999999999999
Q ss_pred EEE
Q psy2427 110 AFI 112 (660)
Q Consensus 110 ~II 112 (660)
+||
T Consensus 185 vvI 187 (451)
T COG0541 185 VVI 187 (451)
T ss_pred EEE
Confidence 987
No 145
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=83.35 E-value=4 Score=43.13 Aligned_cols=73 Identities=16% Similarity=0.161 Sum_probs=45.2
Q ss_pred CCEEEEEECccccc-cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHH
Q psy2427 50 AQRVCVMTDPHLSK-LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAA 126 (660)
Q Consensus 50 ~~r~liVtd~~~~~-~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~ 126 (660)
.+|+++|..+.-.+ ....+++.+.|++.|+++.++....... ...... .....++|+||++|| |+++-+++..
T Consensus 3 ~kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~---~~~~~~-~~~~~~~d~vi~~GGDGT~l~~~~~~ 77 (305)
T PRK02645 3 LKQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDN---PYPVFL-ASASELIDLAIVLGGDGTVLAAARHL 77 (305)
T ss_pred cCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhc---cccchh-hccccCcCEEEEECCcHHHHHHHHHh
Confidence 36888888764322 2345788888999999987654321110 111111 222346899999999 7777777665
No 146
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=83.28 E-value=2.9 Score=43.75 Aligned_cols=75 Identities=19% Similarity=0.234 Sum_probs=45.5
Q ss_pred CCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHHH
Q psy2427 50 AQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAAN 127 (660)
Q Consensus 50 ~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~a 127 (660)
.+|+.|++.+.-.......++.+.|++.|+++.+.......-..... .. +.. ..++|+||++|| |+.+.+++..+
T Consensus 10 ~~~i~ii~~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~-~~-~~~-~~~~Dlvi~iGGDGT~L~aa~~~~ 85 (287)
T PRK14077 10 IKKIGLVTRPNVSLDKEILKLQKILSIYKVEILLEKESAEILDLPGY-GL-DEL-FKISDFLISLGGDGTLISLCRKAA 85 (287)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccc-ch-hhc-ccCCCEEEEECCCHHHHHHHHHhc
Confidence 57899998765322345688888899999988764321100000000 00 111 236899999999 78888888653
No 147
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=83.15 E-value=7.1 Score=43.82 Aligned_cols=86 Identities=13% Similarity=-0.048 Sum_probs=60.7
Q ss_pred HHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhh
Q psy2427 41 VGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVI 120 (660)
Q Consensus 41 l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsvi 120 (660)
+.+.++.+|-+++.+|++..-+.....+.+.+.+++.|+++.....+...+...+....+..+++.++|.+|-++-+...
T Consensus 177 l~~l~~~~~W~~Vaii~~~~~yg~~~~~~~~~~~~~~gi~i~~~~~i~~~~~~~d~~~~l~~lk~~~~da~vvv~~~~~~ 256 (472)
T cd06374 177 MLDIVKRYNWTYVSAVHTEGNYGESGMEAFKELAAHEGLCIAHSDKIYSNAGEQSFDRLLRKLRSRLPKARVVVCFCEGM 256 (472)
T ss_pred HHHHHHHCCCcEEEEEEecchHHHHHHHHHHHHHHHCCeeEEEEEEecCCCchHHHHHHHHHHHhcCCCcEEEEEEechH
Confidence 55667778889999999876554446688999999999887754445556667888888988988777865545433334
Q ss_pred hHHHHH
Q psy2427 121 DTCKAA 126 (660)
Q Consensus 121 D~AK~~ 126 (660)
++..++
T Consensus 257 ~~~~~l 262 (472)
T cd06374 257 TVRGLL 262 (472)
T ss_pred HHHHHH
Confidence 444444
No 148
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=83.13 E-value=11 Score=41.89 Aligned_cols=89 Identities=9% Similarity=-0.053 Sum_probs=63.1
Q ss_pred HHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh-cCCCEEEEecCch
Q psy2427 40 EVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS-VQCDAFIAVGGGS 118 (660)
Q Consensus 40 ~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~D~IIavGGGs 118 (660)
.+.+.+..++.+++.+|++...+.....+.+.+.+++.|+.+.....+...+...+....+..+++ .++|+||..|..
T Consensus 162 a~~~~l~~~~w~~vaii~~~~~~G~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~d~~~~l~~l~~~~~a~viil~~~~- 240 (452)
T cd06362 162 AMVDIVKAFNWTYVSTVASEGNYGEKGIEAFEKLAAERGICIAGSEKIPSSATEEEFDNIIRKLLSKPNARVVVLFCRE- 240 (452)
T ss_pred HHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHHHHHHCCeeEEEEEEcCCCCCHHHHHHHHHHHhhcCCCeEEEEEcCh-
Confidence 355667778889999998876544446688999999999887643344445567788888888776 578998877654
Q ss_pred hhhHHHHHHhHh
Q psy2427 119 VIDTCKAANLYY 130 (660)
Q Consensus 119 viD~AK~~a~~~ 130 (660)
-|+.+++....
T Consensus 241 -~~~~~~~~~a~ 251 (452)
T cd06362 241 -DDIRGLLAAAK 251 (452)
T ss_pred -HHHHHHHHHHH
Confidence 56666665444
No 149
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=82.81 E-value=5.9 Score=42.86 Aligned_cols=87 Identities=16% Similarity=0.104 Sum_probs=61.4
Q ss_pred HHHHHHhcCCC-EEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchh
Q psy2427 41 VGMDMVNMKAQ-RVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSV 119 (660)
Q Consensus 41 l~~~l~~~g~~-r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 119 (660)
+.+++.+.+.+ |+.+|.+...+..+..+.+++.|+..|.++....... |...+....+..++..++|+|+..|-|.
T Consensus 138 ~~~~l~~~~~~k~v~ii~~~~~yg~~~~~~~~~~l~~~G~~~~~~~~~~--~~~~~~~~~v~~i~~~~~d~v~~~~~~~- 214 (366)
T COG0683 138 AADYLVKKGGKKRVAIIGDDYAYGEGLADAFKAALKALGGEVVVEEVYA--PGDTDFSALVAKIKAAGPDAVLVGGYGP- 214 (366)
T ss_pred HHHHHHHhcCCcEEEEEeCCCCcchhHHHHHHHHHHhCCCeEEEEEeeC--CCCCChHHHHHHHHhcCCCEEEECCCCc-
Confidence 56667655545 9999999988888888999999999999833223332 2222388999999999999777665554
Q ss_pred hhHHHHHHhHhc
Q psy2427 120 IDTCKAANLYYC 131 (660)
Q Consensus 120 iD~AK~~a~~~~ 131 (660)
|.+-++-....
T Consensus 215 -~~~~~~r~~~~ 225 (366)
T COG0683 215 -DAALFLRQARE 225 (366)
T ss_pred -cchHHHHHHHH
Confidence 45555544444
No 150
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=81.69 E-value=11 Score=38.32 Aligned_cols=77 Identities=13% Similarity=0.099 Sum_probs=53.0
Q ss_pred HHHHHHHHhcC-CCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 39 REVGMDMVNMK-AQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 39 ~~l~~~l~~~g-~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
..+.+++...+ .+|+.+|++.........+.+.+.+++.|+++.....+.. ..++....+..++..++|.||..+.+
T Consensus 123 ~~~~~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~--~~~~~~~~~~~l~~~~~~~vi~~~~~ 200 (298)
T cd06268 123 AALADYLAEKGKVKKVAIIYDDYAYGRGLAAAFREALKKLGGEVVAEETYPP--GATDFSPLIAKLKAAGPDAVFLAGYG 200 (298)
T ss_pred HHHHHHHHHhcCCCEEEEEEcCCchhHHHHHHHHHHHHHcCCEEEEEeccCC--CCccHHHHHHHHHhcCCCEEEEcccc
Confidence 44667777766 7899999977644334557788889988987654333322 22456667777777789999999875
No 151
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=81.35 E-value=7.3 Score=41.06 Aligned_cols=89 Identities=13% Similarity=0.086 Sum_probs=63.0
Q ss_pred HHHHHHHH-hcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 39 REVGMDMV-NMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 39 ~~l~~~l~-~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
..+.+++. +.|.+|+.||+....+.....+.+.+.+++.|+++.-...++ ++..+....++.+++.++|+|+..++
T Consensus 123 ~~~~~~~~~~~g~~~v~iv~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~--~~~~d~~~~~~~l~~~~~d~v~~~~~- 199 (343)
T PF13458_consen 123 AALAEYLAKKLGAKKVAIVYPDDPYGRSLAEAFRKALEAAGGKVVGEIRYP--PGDTDFSALVQQLKSAGPDVVVLAGD- 199 (343)
T ss_dssp HHHHHHHHHTTTTSEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEE---TTSSHHHHHHHHHHHTTTSEEEEEST-
T ss_pred HHHHHHHHHHcCCcEEEEEecCchhhhHHHHHHHHHHhhcCceeccceecc--cccccchHHHHHHhhcCCCEEEEecc-
Confidence 34566654 478899999997765555566889999999999964222333 34477788888899899999888764
Q ss_pred hhhhHHHHHHhHhc
Q psy2427 118 SVIDTCKAANLYYC 131 (660)
Q Consensus 118 sviD~AK~~a~~~~ 131 (660)
.-|+++++.....
T Consensus 200 -~~~~~~~~~~~~~ 212 (343)
T PF13458_consen 200 -PADAAAFLRQLRQ 212 (343)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHh
Confidence 4456777665554
No 152
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=81.27 E-value=12 Score=40.07 Aligned_cols=88 Identities=14% Similarity=0.020 Sum_probs=63.1
Q ss_pred HHHHHHHhc-----CCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEe
Q psy2427 40 EVGMDMVNM-----KAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAV 114 (660)
Q Consensus 40 ~l~~~l~~~-----g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIav 114 (660)
.+.+++.+. +.+|+.+|+....+.....+.+.+.+++.|+++.....+ .+...+....+..++..++|+|+-.
T Consensus 125 ~l~~~~~~~~~~~~~~~kvaiv~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~--~~~~~D~~~~v~~i~~~~pd~V~~~ 202 (351)
T cd06334 125 ALVQYIAEQEGGKLKGKKIALVYHDSPFGKEPIEALKALAEKLGFEVVLEPVP--PPGPNDQKAQWLQIRRSGPDYVILW 202 (351)
T ss_pred HHHHHHHHhcccCCCCCeEEEEeCCCccchhhHHHHHHHHHHcCCeeeeeccC--CCCcccHHHHHHHHHHcCCCEEEEe
Confidence 355666554 379999999877666566688899999999987643333 2334566777888888999999887
Q ss_pred cCchhhhHHHHHHhHhc
Q psy2427 115 GGGSVIDTCKAANLYYC 131 (660)
Q Consensus 115 GGGsviD~AK~~a~~~~ 131 (660)
+.+. |.+.++-....
T Consensus 203 ~~~~--~~~~~~~~~~~ 217 (351)
T cd06334 203 GWGV--MNPVAIKEAKR 217 (351)
T ss_pred cccc--hHHHHHHHHHH
Confidence 7775 67777655443
No 153
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.07 E-value=3.4 Score=43.29 Aligned_cols=77 Identities=18% Similarity=0.213 Sum_probs=44.2
Q ss_pred CCEEEEEECccccc-cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHH
Q psy2427 50 AQRVCVMTDPHLSK-LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAA 126 (660)
Q Consensus 50 ~~r~liVtd~~~~~-~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~ 126 (660)
.+++.||....-.+ .....++.+.|++.|+++.+...................-...++|+||++|| |+.+-+++.+
T Consensus 5 ~~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~lGGDGT~L~aa~~~ 83 (292)
T PRK03378 5 FKCIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIVVGGDGNMLGAARVL 83 (292)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEEECCcHHHHHHHHHh
Confidence 57889987754322 23558888899999998876432111000000000000111236899999999 7777766654
No 154
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=81.07 E-value=7.3 Score=42.74 Aligned_cols=86 Identities=3% Similarity=0.027 Sum_probs=61.1
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccC-CCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVE-PTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~-p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
..+.+.+..++.+|+.+|++...+.....+.+.+.+++.|+++.....+... ....+....+..++..++|+||-.+.+
T Consensus 165 ~al~~~l~~~~~k~vaii~~~~~~g~~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~~d~~~~l~~i~~~~~dvIil~~~~ 244 (410)
T cd06363 165 EAMVQLLQEFGWNWVAFLGSDDEYGRDGLQLFSELIANTGICIAYQGLIPLDTDPETDYQQILKQINQTKVNVIVVFASR 244 (410)
T ss_pred HHHHHHHHHCCCcEEEEEEeCChhHHHHHHHHHHHHHHCCeEEEEEEEecCCCchHHHHHHHHHHHhcCCCeEEEEEcCh
Confidence 3366677778888999998766555555688889999999877643333322 246678888989999999999887665
Q ss_pred hhhhHHHHH
Q psy2427 118 SVIDTCKAA 126 (660)
Q Consensus 118 sviD~AK~~ 126 (660)
. |+++++
T Consensus 245 ~--~~~~il 251 (410)
T cd06363 245 Q--PAEAFF 251 (410)
T ss_pred H--HHHHHH
Confidence 4 344554
No 155
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=80.99 E-value=17 Score=36.91 Aligned_cols=88 Identities=10% Similarity=0.092 Sum_probs=58.0
Q ss_pred HHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCccc-------CCCHHHHHHHHHHhHhcCCCEEEE
Q psy2427 41 VGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRV-------EPTGDSFLEATKFVRSVQCDAFIA 113 (660)
Q Consensus 41 l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~-------~p~~~~v~~~~~~~~~~~~D~IIa 113 (660)
+.+.|+.+|.+|+-|+|- .... .-+.+.+.|++.|+++..+.+.+. .-+.+.+.+++..+...++|.|+=
T Consensus 111 ~~~AL~alg~~RIalvTP-Y~~~--v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifi 187 (239)
T TIGR02990 111 AVDGLAALGVRRISLLTP-YTPE--TSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFL 187 (239)
T ss_pred HHHHHHHcCCCEEEEECC-CcHH--HHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEE
Confidence 445567789999999975 3332 237899999999999886643322 345778888888777778897665
Q ss_pred ec-CchhhhHHHHHHhHhc
Q psy2427 114 VG-GGSVIDTCKAANLYYC 131 (660)
Q Consensus 114 vG-GGsviD~AK~~a~~~~ 131 (660)
.+ +=...|+..-+=..++
T Consensus 188 sCTnLrt~~vi~~lE~~lG 206 (239)
T TIGR02990 188 SCTALRAATCAQRIEQAIG 206 (239)
T ss_pred eCCCchhHHHHHHHHHHHC
Confidence 53 3344444444433333
No 156
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=80.87 E-value=8 Score=38.53 Aligned_cols=89 Identities=13% Similarity=0.106 Sum_probs=52.5
Q ss_pred HHHHHHHHhcCCCEEEEEECccc--cccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC--CCEEEEe
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHL--SKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ--CDAFIAV 114 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~--~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~--~D~IIav 114 (660)
..+.+++.+.|.+|+.++++... ......+-+++.+++.++.+........+.+.+.....+..+...+ +|+|++.
T Consensus 105 ~~~~~~l~~~g~~~i~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 184 (264)
T cd06267 105 YLAVEHLIELGHRRIAFIGGPPDLSTARERLEGYREALEEAGIPLDEELIVEGDFSEESGYEAARELLASGERPTAIFAA 184 (264)
T ss_pred HHHHHHHHHCCCceEEEecCCCccchHHHHHHHHHHHHHHcCCCCCcceEEecccchhhHHHHHHHHHhcCCCCcEEEEc
Confidence 34557777778889999987643 2222335567788877753322212222333444444444444333 8999999
Q ss_pred cCchhhhHHHHHH
Q psy2427 115 GGGSVIDTCKAAN 127 (660)
Q Consensus 115 GGGsviD~AK~~a 127 (660)
+++....+.+++.
T Consensus 185 ~~~~a~~~~~al~ 197 (264)
T cd06267 185 NDLMAIGALRALR 197 (264)
T ss_pred CcHHHHHHHHHHH
Confidence 8877766666654
No 157
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=80.76 E-value=9.7 Score=40.30 Aligned_cols=88 Identities=11% Similarity=0.070 Sum_probs=61.5
Q ss_pred HHHHHH-HhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 40 EVGMDM-VNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 40 ~l~~~l-~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
.+.+++ ++.|.+++.+++....+.....+.+.+.+++.|+++.....+. +...+....+..++..++|+||-.|.|.
T Consensus 124 ~~~~~~~~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~--~~~~d~~~~v~~l~~~~~d~v~~~~~~~ 201 (340)
T cd06349 124 LLADYAVKDLGFKKVAILSVNTDWGRTSADIFVKAAEKLGGQVVAHEEYV--PGEKDFRPTITRLRDANPDAIILISYYN 201 (340)
T ss_pred HHHHHHHHHcCCcEEEEEecCChHhHHHHHHHHHHHHHcCCEEEEEEEeC--CCCCcHHHHHHHHHhcCCCEEEEccccc
Confidence 366665 4567789999988776655566889999999998876433332 3345667778888889999998887664
Q ss_pred hhhHHHHHHhHhc
Q psy2427 119 VIDTCKAANLYYC 131 (660)
Q Consensus 119 viD~AK~~a~~~~ 131 (660)
|++.++.....
T Consensus 202 --~~~~~~~~~~~ 212 (340)
T cd06349 202 --DGAPIARQARA 212 (340)
T ss_pred --hHHHHHHHHHH
Confidence 55555544443
No 158
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=80.60 E-value=20 Score=37.37 Aligned_cols=77 Identities=14% Similarity=0.109 Sum_probs=49.7
Q ss_pred HHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 40 EVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 40 ~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
.+.+++.+.|.+|+.++.+.........+.+.+.+++.|+++.....+.... .+....+..++..++|+|+..+.+.
T Consensus 123 ~~~~~l~~~g~~~vail~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~--~d~~~~~~~l~~~~pdaIi~~~~~~ 199 (312)
T cd06333 123 AILADMKKRGVKTVAFIGFSDAYGESGLKELKALAPKYGIEVVADERYGRTD--TSVTAQLLKIRAARPDAVLIWGSGT 199 (312)
T ss_pred HHHHHHHHcCCCEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEeeCCCC--cCHHHHHHHHHhCCCCEEEEecCCc
Confidence 3556777789999999987654433455778889999998865322232211 1234444455566899999987543
No 159
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=80.39 E-value=16 Score=39.34 Aligned_cols=78 Identities=14% Similarity=0.125 Sum_probs=52.5
Q ss_pred HhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEE--EEeCcccCCCHHHHHHHHHHhHhcCCCEEEE-ecCchhhhH
Q psy2427 46 VNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE--LFDKVRVEPTGDSFLEATKFVRSVQCDAFIA-VGGGSVIDT 122 (660)
Q Consensus 46 ~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~--~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa-vGGGsviD~ 122 (660)
.++|.+|+++|....++....-+-+++.+++.|.++. .|-.. ..+++.++++.+++.++|+|+. +.|-|....
T Consensus 130 ~~~G~~r~~lvGSdYv~pre~Nri~r~~l~~~GgevvgE~Y~pl----g~td~~~ii~~I~~~~Pd~V~stlvG~s~~aF 205 (363)
T PF13433_consen 130 ENFGAKRFYLVGSDYVYPRESNRIIRDLLEARGGEVVGERYLPL----GATDFDPIIAEIKAAKPDFVFSTLVGDSNVAF 205 (363)
T ss_dssp HHS--SEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEE-S-----HHHHHHHHHHHHHHT-SEEEEE--TTCHHHH
T ss_pred hccCCceEEEecCCccchHHHHHHHHHHHHHcCCEEEEEEEecC----CchhHHHHHHHHHhhCCCEEEEeCcCCcHHHH
Confidence 5568799999999888765444667788888888765 23222 3489999999999999999886 555666666
Q ss_pred HHHHH
Q psy2427 123 CKAAN 127 (660)
Q Consensus 123 AK~~a 127 (660)
=|..+
T Consensus 206 ~r~~~ 210 (363)
T PF13433_consen 206 YRAYA 210 (363)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 56554
No 160
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=80.01 E-value=13 Score=42.30 Aligned_cols=88 Identities=3% Similarity=0.032 Sum_probs=62.1
Q ss_pred HHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhh
Q psy2427 41 VGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVI 120 (660)
Q Consensus 41 l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsvi 120 (660)
+.+.++.+|.+++.+|....-+.....+.+.+.+++.|+++.....+....+..+....+..++..++|+||..|.+.
T Consensus 178 i~~l~~~f~wk~VaiI~~dd~yG~~~~~~~~~~~~~~Gi~I~~~~~i~~~~~~~d~~~~l~klk~~~a~vVvl~~~~~-- 255 (510)
T cd06364 178 MADIIEYFRWNWVGTIAADDDYGRPGIEKFREEAEERDICIDFSELISQYSDEEEIQRVVEVIQNSTAKVIVVFSSGP-- 255 (510)
T ss_pred HHHHHHHcCCeEEEEEEecCcchHHHHHHHHHHHHHCCcEEEEEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEeCcH--
Confidence 455667788899888865554444466889999999999876443344444677788888888888999999876653
Q ss_pred hHHHHHHhHh
Q psy2427 121 DTCKAANLYY 130 (660)
Q Consensus 121 D~AK~~a~~~ 130 (660)
|++.++....
T Consensus 256 ~~~~ll~qa~ 265 (510)
T cd06364 256 DLEPLIKEIV 265 (510)
T ss_pred HHHHHHHHHH
Confidence 5666654433
No 161
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=79.90 E-value=4.1 Score=42.94 Aligned_cols=76 Identities=16% Similarity=0.347 Sum_probs=45.2
Q ss_pred CCEEEEEECccccc-cchHHHHHHHHHhCCCeEEEEeCccc-----CCCH------HHHHHHHHHhHhcCCCEEEEecC-
Q psy2427 50 AQRVCVMTDPHLSK-LAPVKATLDSLTRHGVKFELFDKVRV-----EPTG------DSFLEATKFVRSVQCDAFIAVGG- 116 (660)
Q Consensus 50 ~~r~liVtd~~~~~-~~~~~~i~~~L~~~gi~~~~~~~~~~-----~p~~------~~v~~~~~~~~~~~~D~IIavGG- 116 (660)
.+++.||..+.-.+ ....+++.+.|++.|+++.+...... ++.. +.+.. .+ ....++|+||.+||
T Consensus 5 ~~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~D~vi~lGGD 82 (306)
T PRK03372 5 SRRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDA-DP-DAADGCELVLVLGGD 82 (306)
T ss_pred ccEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccc-hh-hcccCCCEEEEEcCC
Confidence 46788887654322 23558888889999998876542111 0000 00000 01 11236899999999
Q ss_pred chhhhHHHHHH
Q psy2427 117 GSVIDTCKAAN 127 (660)
Q Consensus 117 GsviD~AK~~a 127 (660)
|+.+-+++.+.
T Consensus 83 GT~L~aar~~~ 93 (306)
T PRK03372 83 GTILRAAELAR 93 (306)
T ss_pred HHHHHHHHHhc
Confidence 88887777653
No 162
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=79.55 E-value=9.1 Score=40.75 Aligned_cols=78 Identities=15% Similarity=0.091 Sum_probs=57.3
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc------------
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV------------ 106 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~------------ 106 (660)
..+..++.+.|.+|+.++++...+.....+.+.+.+++.|.++.....+ .+...+....+..++..
T Consensus 113 ~~~~~~~~~~g~k~vaii~~~~~~g~~~~~~f~~~~~~~G~~vv~~~~~--~~~~~d~~~~i~~i~~~~~~~~~~~~~~~ 190 (336)
T cd06339 113 RRAAEYARSQGKRRPLVLAPDGAYGQRVADAFRQAWQQLGGTVVAIESY--DPSPTDLSDAIRRLLGVDDSEQRIAQLKS 190 (336)
T ss_pred HHHHHHHHhcCccceEEEecCChHHHHHHHHHHHHHHHcCCceeeeEec--CCCHHHHHHHHHHHhccccchhhhhhhhh
Confidence 3466777777889999999876555556678889999999887644333 34556666677777766
Q ss_pred ---------CCCEEEEecCch
Q psy2427 107 ---------QCDAFIAVGGGS 118 (660)
Q Consensus 107 ---------~~D~IIavGGGs 118 (660)
++|.|+.+|-+.
T Consensus 191 ~~~~~~~~~~~d~v~~~~~~~ 211 (336)
T cd06339 191 LESEPRRRQDIDAIDAVALPD 211 (336)
T ss_pred cccCccccCCCCcEEEEecCh
Confidence 899998887775
No 163
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=79.41 E-value=7.1 Score=41.32 Aligned_cols=86 Identities=16% Similarity=0.065 Sum_probs=54.7
Q ss_pred HHHHHHHHHhcCCCEEEEEECcc-ccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC
Q psy2427 38 TREVGMDMVNMKAQRVCVMTDPH-LSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG 116 (660)
Q Consensus 38 ~~~l~~~l~~~g~~r~liVtd~~-~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG 116 (660)
...+.+++.+.|.+|+.+|.... .......+.+++.+++.|+++.....+.. ...+....+..+++.++|+|+..+.
T Consensus 120 ~~~~~~~l~~~g~~~~~~i~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~--~~~d~~~~~~~i~~~~pdaV~~~~~ 197 (341)
T cd06341 120 LTTWGDFAKDQGGTRAVALVTALSAAVSAAAALLARSLAAAGVSVAGIVVITA--TAPDPTPQAQQAAAAGADAIITVLD 197 (341)
T ss_pred hHHHHHHHHHcCCcEEEEEEeCCcHHHHHHHHHHHHHHHHcCCccccccccCC--CCCCHHHHHHHHHhcCCCEEEEecC
Confidence 35577788888888888775433 23334557788999999987653222222 2344555666777789999998876
Q ss_pred c-hhhhHHHH
Q psy2427 117 G-SVIDTCKA 125 (660)
Q Consensus 117 G-sviD~AK~ 125 (660)
+ ....+.|.
T Consensus 198 ~~~a~~~~~~ 207 (341)
T cd06341 198 AAVCASVLKA 207 (341)
T ss_pred hHHHHHHHHH
Confidence 6 33333333
No 164
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=79.38 E-value=5.4 Score=41.18 Aligned_cols=57 Identities=11% Similarity=0.214 Sum_probs=40.0
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAAN 127 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~a 127 (660)
+++.|+..+.-......+++.+.|++.|+++..- . .++|+||.+|| |+.+.+++.++
T Consensus 3 ~~i~iv~~~~~~a~~~~~~l~~~l~~~g~~~~~~------------------~--~~~D~vi~lGGDGT~L~a~~~~~ 60 (264)
T PRK03501 3 RNLFFFYKRDKELVEKVKPLKKIAEEYGFTVVDH------------------P--KNANIIVSIGGDGTFLQAVRKTG 60 (264)
T ss_pred cEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEcC------------------C--CCccEEEEECCcHHHHHHHHHhc
Confidence 3677776544333345678888899999876521 1 35899999997 88888877653
No 165
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=79.27 E-value=11 Score=39.69 Aligned_cols=52 Identities=15% Similarity=0.247 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCc
Q psy2427 92 TGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGT 167 (660)
Q Consensus 92 ~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gt 167 (660)
+.+..+++++.+++++.|.+|.|||--.++.|..++..+. +|+|.||=|.-.
T Consensus 76 ~~~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~------------------------i~vigiPkTIDN 127 (301)
T TIGR02482 76 TEEGRQKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEEGG------------------------IPVIGLPGTIDN 127 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhhC------------------------CCEEeecccccC
Confidence 5678999999999999999999999999998877754332 899999999733
No 166
>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Probab=79.20 E-value=12 Score=40.22 Aligned_cols=89 Identities=12% Similarity=0.104 Sum_probs=61.2
Q ss_pred HHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchh
Q psy2427 40 EVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSV 119 (660)
Q Consensus 40 ~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 119 (660)
.+.+++.+.+.+|+.+|...........+.+.+.+++.|+++..-..+...++..+....+..++..++|.|+..+-+.
T Consensus 122 ~~~~~~~~~~~~~v~~i~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~~~d~s~~v~~l~~~~pd~V~~~~~~~- 200 (360)
T cd06357 122 PLADYLLRHYGKRVFLVGSNYIYPYESNRIMRDLLEQRGGEVLGERYLPLGASDEDFARIVEEIREAQPDFIFSTLVGQ- 200 (360)
T ss_pred HHHHHHHhcCCcEEEEECCCCcchHHHHHHHHHHHHHcCCEEEEEEEecCCCchhhHHHHHHHHHHcCCCEEEEeCCCC-
Confidence 4667777655588888876655544455778889999998876322233455577888888999999999998765443
Q ss_pred hhHHHHHHhHh
Q psy2427 120 IDTCKAANLYY 130 (660)
Q Consensus 120 iD~AK~~a~~~ 130 (660)
|.+.++-...
T Consensus 201 -~~~~~~~~~~ 210 (360)
T cd06357 201 -SSYAFYRAYA 210 (360)
T ss_pred -ChHHHHHHHH
Confidence 5566554333
No 167
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=78.89 E-value=15 Score=37.30 Aligned_cols=86 Identities=10% Similarity=0.118 Sum_probs=56.3
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
..+.+++...|.+++.++.+.........+-+.+.+++.|+++.....+... .+.....++.+++.++|+|+..+.+
T Consensus 125 ~~~~~~l~~~~~~~v~iv~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~--~~~~~~~~~~l~~~~~~~v~~~~~~- 201 (299)
T cd04509 125 EALADYIKEYNWKKVAILYDDDSYGRGLLEAFKAAFKKKGGTVVGEEYYPLG--TTDFTSLLQKLKAAKPDVIVLCGSG- 201 (299)
T ss_pred HHHHHHHHHcCCcEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEecCCCC--CccHHHHHHHHHhcCCCEEEEcccc-
Confidence 3466778888889999998765433334567778888888876543333222 2456667777777789999998875
Q ss_pred hhhHHHHHHh
Q psy2427 119 VIDTCKAANL 128 (660)
Q Consensus 119 viD~AK~~a~ 128 (660)
-++..++..
T Consensus 202 -~~~~~~~~~ 210 (299)
T cd04509 202 -EDAATILKQ 210 (299)
T ss_pred -hHHHHHHHH
Confidence 334444433
No 168
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=78.76 E-value=9.8 Score=40.58 Aligned_cols=75 Identities=12% Similarity=-0.006 Sum_probs=52.7
Q ss_pred HHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 41 VGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 41 l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
+..++.+.+.+|+.++.....+.....+.+.+.+++.|.++.....+. +...+....+..+++.++|.|+-.+.+
T Consensus 129 ~~~~~~~~~~~~v~il~~d~~~g~~~~~~~~~~l~~~G~~vv~~~~~~--~~~~D~s~~i~~i~~~~~d~v~~~~~~ 203 (347)
T cd06336 129 FLAYAKKPGGKKVALLGPNDAYGQPWVAAYKAAWEAAGGKVVSEEPYD--PGTTDFSPIVTKLLAEKPDVIFLGGPS 203 (347)
T ss_pred HHHHHhhcCCceEEEEccCCchhHHHHHHHHHHHHHcCCEEeeecccC--CCCcchHHHHHHHHhcCCCEEEEcCCC
Confidence 445555567799999987766555566888899999998876433333 335667778888888999988755443
No 169
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=78.26 E-value=10 Score=40.27 Aligned_cols=80 Identities=9% Similarity=0.032 Sum_probs=55.4
Q ss_pred cCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHH
Q psy2427 48 MKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAAN 127 (660)
Q Consensus 48 ~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a 127 (660)
+|.+|+.++.+...+.....+.+.+.+++.|+++.....+.. ...+....+..+++.++|.|+..+.+. |.++++.
T Consensus 142 ~~~~~va~l~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~--~~~d~~~~v~~l~~~~~d~v~~~~~~~--~~~~~~~ 217 (344)
T cd06345 142 HGFKTAAIVAEDAAWGKGIDAGIKALLPEAGLEVVSVERFSP--DTTDFTPILQQIKAADPDVIIAGFSGN--VGVLFTQ 217 (344)
T ss_pred CCCceEEEEecCchhhhHHHHHHHHHHHHcCCeEEEEEecCC--CCCchHHHHHHHHhcCCCEEEEeecCc--hHHHHHH
Confidence 678999999987765555668888999998988664333322 234566677777888999998877654 5556554
Q ss_pred hHhc
Q psy2427 128 LYYC 131 (660)
Q Consensus 128 ~~~~ 131 (660)
....
T Consensus 218 ~~~~ 221 (344)
T cd06345 218 QWAE 221 (344)
T ss_pred HHHH
Confidence 4343
No 170
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=77.90 E-value=13 Score=39.45 Aligned_cols=84 Identities=7% Similarity=0.026 Sum_probs=59.0
Q ss_pred HHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhh
Q psy2427 41 VGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVI 120 (660)
Q Consensus 41 l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsvi 120 (660)
+..++.+. .+|+.+++....+.....+.+.+.+++.|+++.....+ .+...+....+..+++.++|.|+-+..|-.
T Consensus 128 ~~~~~~~~-~~~v~~i~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~--~~~~~d~~~~v~~l~~~~pd~V~~~~~~~~- 203 (333)
T cd06328 128 AAAALGKP-GKKIATLAQDYAFGRDGVAAFKAALEKLGAAIVTEEYA--PTDTTDFTPYAQRLLDALKKVLFVIWAGAG- 203 (333)
T ss_pred HHHHHHhc-CCeEEEEecCccccHHHHHHHHHHHHhCCCEEeeeeeC--CCCCcchHHHHHHHHhcCCCEEEEEecCch-
Confidence 44555555 48999999887766666788999999999987643333 345566777788888899998866543333
Q ss_pred hHHHHHHh
Q psy2427 121 DTCKAANL 128 (660)
Q Consensus 121 D~AK~~a~ 128 (660)
+..+.+..
T Consensus 204 ~~~~~~~~ 211 (333)
T cd06328 204 GPWPKLQQ 211 (333)
T ss_pred hHHHHHHH
Confidence 67776544
No 171
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=77.07 E-value=12 Score=35.81 Aligned_cols=82 Identities=10% Similarity=0.135 Sum_probs=57.7
Q ss_pred eEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhC--CCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 30 TIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRH--GVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 30 ~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~--gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
.-+-|.+.+..+-..+...+ .|++++.+.. ...+++.+.|++. ++.+.-+. .+.-+.++.+++++.+++.+
T Consensus 29 ~rv~g~dl~~~l~~~~~~~~-~~ifllG~~~----~~~~~~~~~l~~~yP~l~ivg~~--~g~f~~~~~~~i~~~I~~~~ 101 (172)
T PF03808_consen 29 ERVTGSDLFPDLLRRAEQRG-KRIFLLGGSE----EVLEKAAANLRRRYPGLRIVGYH--HGYFDEEEEEAIINRINASG 101 (172)
T ss_pred cccCHHHHHHHHHHHHHHcC-CeEEEEeCCH----HHHHHHHHHHHHHCCCeEEEEec--CCCCChhhHHHHHHHHHHcC
Confidence 44568888888887777776 7999998765 2346777777776 45544222 12227788999999999999
Q ss_pred CC-EEEEecCch
Q psy2427 108 CD-AFIAVGGGS 118 (660)
Q Consensus 108 ~D-~IIavGGGs 118 (660)
+| ++||+|...
T Consensus 102 pdiv~vglG~Pk 113 (172)
T PF03808_consen 102 PDIVFVGLGAPK 113 (172)
T ss_pred CCEEEEECCCCH
Confidence 99 566777664
No 172
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=76.98 E-value=11 Score=42.32 Aligned_cols=88 Identities=7% Similarity=-0.065 Sum_probs=62.8
Q ss_pred HHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh-cCCCEEEEecCchh
Q psy2427 41 VGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS-VQCDAFIAVGGGSV 119 (660)
Q Consensus 41 l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~D~IIavGGGsv 119 (660)
+.+.++.+|-+++.+|.+..-+.....+.+.+.+++.|+.+.....+...+...+....++.++. .++|+||..|. .
T Consensus 165 i~~ll~~~~W~~Vaii~~~~~yG~~~~~~~~~~~~~~gi~i~~~~~i~~~~~~~d~~~~l~~l~~~~~a~vVvl~~~--~ 242 (458)
T cd06375 165 MAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATSEKVGRSADRKSYDSVIRKLLQKPNARVVVLFTR--S 242 (458)
T ss_pred HHHHHHHCCCeEEEEEEeCchHHHHHHHHHHHHHHHCCeeEEEEEEecCCCCHHHHHHHHHHHhccCCCEEEEEecC--h
Confidence 55667778889999998766554456688889999999887655556556667777777777654 68999887664 4
Q ss_pred hhHHHHHHhHh
Q psy2427 120 IDTCKAANLYY 130 (660)
Q Consensus 120 iD~AK~~a~~~ 130 (660)
-|+..++....
T Consensus 243 ~~~~~ll~~a~ 253 (458)
T cd06375 243 EDARELLAAAK 253 (458)
T ss_pred HHHHHHHHHHH
Confidence 56666654433
No 173
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=76.84 E-value=15 Score=38.68 Aligned_cols=84 Identities=13% Similarity=0.105 Sum_probs=55.4
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
..+.+++.+.|.+|+.+|.+.........+.+.+.+++.|+++.....+. +...+....+..+++.++|.|+..+-+.
T Consensus 125 ~~~~~~l~~~g~~~v~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~--~~~~d~~~~~~~l~~~~~dav~~~~~~~ 202 (336)
T cd06326 125 AAIVRHLVTLGLKRIAVFYQDDAFGKDGLAGVEKALAARGLKPVATASYE--RNTADVAAAVAQLAAARPQAVIMVGAYK 202 (336)
T ss_pred HHHHHHHHHhCCceEEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEeec--CCcccHHHHHHHHHhcCCCEEEEEcCcH
Confidence 34667777888899999977554444455778889999898754322222 2234555666666677899999987553
Q ss_pred -hhhHHH
Q psy2427 119 -VIDTCK 124 (660)
Q Consensus 119 -viD~AK 124 (660)
++.+.|
T Consensus 203 ~a~~~i~ 209 (336)
T cd06326 203 AAAAFIR 209 (336)
T ss_pred HHHHHHH
Confidence 444444
No 174
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=76.78 E-value=22 Score=37.62 Aligned_cols=87 Identities=9% Similarity=0.074 Sum_probs=59.3
Q ss_pred HHHHHHHhcC--CCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 40 EVGMDMVNMK--AQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 40 ~l~~~l~~~g--~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
.+.+.+.+.+ .+|+.+|.....+.....+.+.+.+++.|+++.-...+. +...+....+..+++.++|.||-.+.+
T Consensus 129 ~~~~~~~~~~~~~~~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~--~~~~d~~~~v~~l~~~~~d~i~~~~~~ 206 (345)
T cd06338 129 SLLEMLVALDPRPKKVAILYADDPFSQDVAEGAREKAEAAGLEVVYDETYP--PGTADLSPLISKAKAAGPDAVVVAGHF 206 (345)
T ss_pred HHHHHHHhcCCCCceEEEEecCCcccHHHHHHHHHHHHHcCCEEEEEeccC--CCccchHHHHHHHHhcCCCEEEECCcc
Confidence 3556666665 799999998765554456888899999998876322332 333466677778888899999876655
Q ss_pred hhhhHHHHHHhHh
Q psy2427 118 SVIDTCKAANLYY 130 (660)
Q Consensus 118 sviD~AK~~a~~~ 130 (660)
. |...++-...
T Consensus 207 ~--~~~~~~~~~~ 217 (345)
T cd06338 207 P--DAVLLVRQMK 217 (345)
T ss_pred h--hHHHHHHHHH
Confidence 4 5665554333
No 175
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=76.68 E-value=5.9 Score=40.91 Aligned_cols=54 Identities=19% Similarity=0.320 Sum_probs=36.4
Q ss_pred EEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHHH
Q psy2427 52 RVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAAN 127 (660)
Q Consensus 52 r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~a 127 (660)
++.|+....-......+++.+.|++.|+++ + ..++|+||.+|| |+.+-+++...
T Consensus 2 ~i~Ii~~~~~~~~~~~~~l~~~l~~~g~~~---~-------------------~~~~Dlvi~iGGDGT~L~a~~~~~ 56 (265)
T PRK04885 2 KVAIISNGDPKSKRVASKLKKYLKDFGFIL---D-------------------EKNPDIVISVGGDGTLLSAFHRYE 56 (265)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCcc---C-------------------CcCCCEEEEECCcHHHHHHHHHhc
Confidence 356665533222235577888888888762 1 136899999999 88888887664
No 176
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=76.55 E-value=21 Score=37.40 Aligned_cols=87 Identities=14% Similarity=0.084 Sum_probs=60.1
Q ss_pred HHHHHHH-hcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 40 EVGMDMV-NMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 40 ~l~~~l~-~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
.+..++. ..+.+|+.+|++...+.....+.+.+.+++.|+++.....+. +...+....+..+++.++|+||-.|.
T Consensus 124 ~~~~~~~~~~~~~~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~--~~~~d~~~~l~~i~~~~~~~vi~~~~-- 199 (334)
T cd06342 124 AAAKYAVETLKAKKVAIIDDKTAYGQGLADEFKKALKAAGGKVVAREGTT--DGATDFSAILTKIKAANPDAVFFGGY-- 199 (334)
T ss_pred HHHHHHHHhcCCCEEEEEeCCcchhhHHHHHHHHHHHHcCCEEEEEecCC--CCCccHHHHHHHHHhcCCCEEEEcCc--
Confidence 3556554 456789999998776555556788889998898877544443 33466777788888889999987654
Q ss_pred hhhHHHHHHhHh
Q psy2427 119 VIDTCKAANLYY 130 (660)
Q Consensus 119 viD~AK~~a~~~ 130 (660)
.-|.++++....
T Consensus 200 ~~~~~~~~~~~~ 211 (334)
T cd06342 200 YPEAGPLVRQMR 211 (334)
T ss_pred chhHHHHHHHHH
Confidence 346666664444
No 177
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=76.25 E-value=5.2 Score=41.75 Aligned_cols=52 Identities=19% Similarity=0.339 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCc
Q psy2427 92 TGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGT 167 (660)
Q Consensus 92 ~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gt 167 (660)
..+...++++.++++++|.+|.|||--.++.|+.++.... +|+|.||-|.-.
T Consensus 77 ~~~~~~~~~~~l~~~~Id~Li~IGG~gs~~~a~~L~~~~~------------------------i~vigiPkTIDN 128 (282)
T PF00365_consen 77 DPEGRKKIVENLKKLGIDALIVIGGDGSMKGAHKLSEEFG------------------------IPVIGIPKTIDN 128 (282)
T ss_dssp SHHHHHHHHHHHHHTTESEEEEEESHHHHHHHHHHHHHHH------------------------SEEEEEEEETTS
T ss_pred chhhhhhHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCc------------------------eEEEEEeccccC
Confidence 3566778999999999999999999999999998875444 899999999733
No 178
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=75.97 E-value=5.2 Score=36.57 Aligned_cols=75 Identities=12% Similarity=0.098 Sum_probs=46.7
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcc-----cCCCH------HHHHHHHHHhHhcC
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR-----VEPTG------DSFLEATKFVRSVQ 107 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~-----~~p~~------~~v~~~~~~~~~~~ 107 (660)
+++.+.|+.- +|++|++|......+..+++.+..++.|+.+..-.... .+|.. -.-....+.++ +
T Consensus 2 ~~~~~~L~~A--~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~--~ 77 (137)
T PF00205_consen 2 DEAADLLSSA--KRPVILAGRGARRSGAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALE--Q 77 (137)
T ss_dssp HHHHHHHHH---SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHH--H
T ss_pred HHHHHHHHhC--CCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhc--C
Confidence 4555656553 79999999998766677889998888899876432221 23321 01122233333 5
Q ss_pred CCEEEEecCc
Q psy2427 108 CDAFIAVGGG 117 (660)
Q Consensus 108 ~D~IIavGGG 117 (660)
+|+||+||.-
T Consensus 78 aDlvl~iG~~ 87 (137)
T PF00205_consen 78 ADLVLAIGTR 87 (137)
T ss_dssp SSEEEEESSS
T ss_pred CCEEEEECCC
Confidence 8999999854
No 179
>KOG0780|consensus
Probab=75.37 E-value=13 Score=40.08 Aligned_cols=82 Identities=13% Similarity=0.118 Sum_probs=57.3
Q ss_pred ECcChH---HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCC
Q psy2427 33 IGPGVT---REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCD 109 (660)
Q Consensus 33 ~G~g~~---~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D 109 (660)
.|.|-. .+++-++++.| .++++||....+. +.+|++...-.+.++.++ .....--......+.++.+++.++|
T Consensus 110 qG~GKTTtc~KlA~y~kkkG-~K~~LvcaDTFRa-gAfDQLkqnA~k~~iP~y--gsyte~dpv~ia~egv~~fKke~fd 185 (483)
T KOG0780|consen 110 QGSGKTTTCTKLAYYYKKKG-YKVALVCADTFRA-GAFDQLKQNATKARVPFY--GSYTEADPVKIASEGVDRFKKENFD 185 (483)
T ss_pred cCCCcceeHHHHHHHHHhcC-CceeEEeeccccc-chHHHHHHHhHhhCCeeE--ecccccchHHHHHHHHHHHHhcCCc
Confidence 366644 45677778888 4666666555443 466999988888888754 3333345577788999999999999
Q ss_pred EEEEecCch
Q psy2427 110 AFIAVGGGS 118 (660)
Q Consensus 110 ~IIavGGGs 118 (660)
+||.==.|.
T Consensus 186 vIIvDTSGR 194 (483)
T KOG0780|consen 186 VIIVDTSGR 194 (483)
T ss_pred EEEEeCCCc
Confidence 998655543
No 180
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=75.33 E-value=9.1 Score=40.21 Aligned_cols=76 Identities=14% Similarity=0.231 Sum_probs=44.7
Q ss_pred CCEEEEEECccccc-cchHHHHHHHHHhCCCeEEEEeCccc-CCCH------HHHHHHHHHhHhcCCCEEEEecC-chhh
Q psy2427 50 AQRVCVMTDPHLSK-LAPVKATLDSLTRHGVKFELFDKVRV-EPTG------DSFLEATKFVRSVQCDAFIAVGG-GSVI 120 (660)
Q Consensus 50 ~~r~liVtd~~~~~-~~~~~~i~~~L~~~gi~~~~~~~~~~-~p~~------~~v~~~~~~~~~~~~D~IIavGG-Gsvi 120 (660)
.+|+.|+..+.-.+ ....+++.+.|++.|+++.+...... ++.. ...... ... ..++|+||.+|| |+.+
T Consensus 5 ~~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~D~vi~lGGDGT~L 82 (296)
T PRK04539 5 FHNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNK-TEL-GQYCDLVAVLGGDGTFL 82 (296)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccch-hhc-CcCCCEEEEECCcHHHH
Confidence 47889987654322 23568888899999998876421100 0000 000000 111 236899999999 7888
Q ss_pred hHHHHHH
Q psy2427 121 DTCKAAN 127 (660)
Q Consensus 121 D~AK~~a 127 (660)
-+++.+.
T Consensus 83 ~aa~~~~ 89 (296)
T PRK04539 83 SVAREIA 89 (296)
T ss_pred HHHHHhc
Confidence 7777653
No 181
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=75.03 E-value=12 Score=39.66 Aligned_cols=87 Identities=9% Similarity=-0.019 Sum_probs=55.6
Q ss_pred HHHHHHHhcC--CCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 40 EVGMDMVNMK--AQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 40 ~l~~~l~~~g--~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
.+.+++...+ .+|+.+|...........+.+.+.+++.|+.+.+.......+...+....+..++..++|.||.++.+
T Consensus 126 ~~~~~~~~~~~~~~~v~~l~~~~~~g~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~~v~~i~~~~~d~ii~~~~~ 205 (346)
T cd06330 126 AGALYAAKLDKKAKTWATINPDYAYGQDAWADFKAALKRLRPDVEVVSEQWPKLGAPDYGSEITALLAAKPDAIFSSLWG 205 (346)
T ss_pred HHHHHHHHhCcCccEEEEECCchHHHHHHHHHHHHHHHHhCCCCeecccccCCCCCcccHHHHHHHHhcCCCEEEEeccc
Confidence 3556666653 68999998665544445577888888885443332222223345677777788888999999988754
Q ss_pred hhhhHHHHHHh
Q psy2427 118 SVIDTCKAANL 128 (660)
Q Consensus 118 sviD~AK~~a~ 128 (660)
.|.+.++..
T Consensus 206 --~~~~~~~~~ 214 (346)
T cd06330 206 --GDLVTFVRQ 214 (346)
T ss_pred --ccHHHHHHH
Confidence 344555433
No 182
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=74.97 E-value=15 Score=39.73 Aligned_cols=87 Identities=13% Similarity=0.014 Sum_probs=61.6
Q ss_pred HHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCC----eEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC
Q psy2427 41 VGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGV----KFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG 116 (660)
Q Consensus 41 l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi----~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG 116 (660)
+.+.++.+|-+++.||++..-+..+..+.+.+.+++.|+ ++.....+ .+...+....++.++..++|+||..|
T Consensus 145 ~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~~~~~v~~~~~~--~~~~~d~~~~l~~ik~~~~~vIvl~~- 221 (377)
T cd06379 145 WLEMLRSFKWNKVILLVSDDHEGRAAQKRFETLLEEREIEFKIKVEKVVEF--EPGEKNVTSLLQEAKELTSRVILLSA- 221 (377)
T ss_pred HHHHHHHcCCeEEEEEEEcCcchhHHHHHHHHHHHhcCCccceeeeEEEec--CCchhhHHHHHHHHhhcCCeEEEEEc-
Confidence 556677788899999998775555566889999999998 54432223 33456777888888888999998654
Q ss_pred chhhhHHHHHHhHhc
Q psy2427 117 GSVIDTCKAANLYYC 131 (660)
Q Consensus 117 GsviD~AK~~a~~~~ 131 (660)
+.-|+..++.....
T Consensus 222 -~~~~~~~l~~qa~~ 235 (377)
T cd06379 222 -SEDDAAVIYRNAGM 235 (377)
T ss_pred -CHHHHHHHHHHHHH
Confidence 45566666654443
No 183
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=74.78 E-value=12 Score=39.49 Aligned_cols=89 Identities=15% Similarity=-0.027 Sum_probs=60.2
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
..+.+++.+.|.+++.+|+....+.....+.+.+.|++.|+++.....+ .+...+....+..+++.++|.|+-.+.
T Consensus 123 ~~~~~~l~~~~~~~v~~l~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~--~~~~~d~~~~v~~~~~~~pd~v~~~~~-- 198 (336)
T cd06360 123 APMGKYAADDGYKKVVTVAWDYAFGYEVVEGFKEAFTEAGGKIVKELWV--PFGTSDFASYLAQIPDDVPDAVFVFFA-- 198 (336)
T ss_pred HHHHHHHHHcCCCeEEEEeccchhhHHHHHHHHHHHHHcCCEEEEEEec--CCCCcchHHHHHHHHhcCCCEEEEecc--
Confidence 3466778777889999998766554445577888999999887532222 233556667788888899999986544
Q ss_pred hhhHHHHHHhHhc
Q psy2427 119 VIDTCKAANLYYC 131 (660)
Q Consensus 119 viD~AK~~a~~~~ 131 (660)
.-|.++++-....
T Consensus 199 ~~~~~~~~~~~~~ 211 (336)
T cd06360 199 GGDAIKFVKQYDA 211 (336)
T ss_pred cccHHHHHHHHHH
Confidence 3456666554443
No 184
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=73.26 E-value=22 Score=38.41 Aligned_cols=86 Identities=10% Similarity=0.025 Sum_probs=56.1
Q ss_pred HHHHHHHhcCCCEEEEEECccc-cccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 40 EVGMDMVNMKAQRVCVMTDPHL-SKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 40 ~l~~~l~~~g~~r~liVtd~~~-~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
.+.++++.+|.+++.|+.+... +.....+.+.+.+++.|+++.....+...++..+....++.++..+ |+||-.+.+
T Consensus 127 a~~~~l~~~~~~~v~ii~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~d~~~~l~~i~~~~-~vii~~~~~- 204 (389)
T cd06352 127 AVLALLRWFNWHVAVVVYSDDSENCFFTLEALEAALREFNLTVSHVVFMEDNSGAEDLLEILQDIKRRS-RIIIMCGSS- 204 (389)
T ss_pred HHHHHHHHcCceEEEEEEecCCccHHHHHHHHHHHHHhcCCeEEEEEEecCCccchhHHHHHHHhhhcc-eEEEEECCH-
Confidence 3666777778788888887654 3334568888999999988764333333222455666667777666 888887765
Q ss_pred hhhHHHHHHh
Q psy2427 119 VIDTCKAANL 128 (660)
Q Consensus 119 viD~AK~~a~ 128 (660)
-|+..++..
T Consensus 205 -~~~~~~l~q 213 (389)
T cd06352 205 -EDVRELLLA 213 (389)
T ss_pred -HHHHHHHHH
Confidence 455555443
No 185
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=73.25 E-value=18 Score=38.30 Aligned_cols=80 Identities=16% Similarity=0.117 Sum_probs=58.6
Q ss_pred CcChHH---HHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCE
Q psy2427 34 GPGVTR---EVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDA 110 (660)
Q Consensus 34 G~g~~~---~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~ 110 (660)
|.|-.. +|+.++.+.| +|+++..+..++.. ..+++.---++.|+.+.-. . .+.-+-..+-.+++.++..+.|+
T Consensus 149 G~GKTTTIaKLA~~l~~~g-~~VllaA~DTFRAa-AiEQL~~w~er~gv~vI~~-~-~G~DpAaVafDAi~~Akar~~Dv 224 (340)
T COG0552 149 GVGKTTTIAKLAKYLKQQG-KSVLLAAGDTFRAA-AIEQLEVWGERLGVPVISG-K-EGADPAAVAFDAIQAAKARGIDV 224 (340)
T ss_pred CCchHhHHHHHHHHHHHCC-CeEEEEecchHHHH-HHHHHHHHHHHhCCeEEcc-C-CCCCcHHHHHHHHHHHHHcCCCE
Confidence 666544 4556666677 89999988776654 5688888888889887643 2 33333458899999999999999
Q ss_pred EEEecCchhhhHHH
Q psy2427 111 FIAVGGGSVIDTCK 124 (660)
Q Consensus 111 IIavGGGsviD~AK 124 (660)
|| +|+|+
T Consensus 225 vl-------iDTAG 231 (340)
T COG0552 225 VL-------IDTAG 231 (340)
T ss_pred EE-------EeCcc
Confidence 98 47665
No 186
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.
Probab=73.12 E-value=17 Score=40.84 Aligned_cols=92 Identities=11% Similarity=0.097 Sum_probs=62.0
Q ss_pred ceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCH--HHHHH
Q psy2427 21 EYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTG--DSFLE 98 (660)
Q Consensus 21 ~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~--~~v~~ 98 (660)
++-|++.|+.-..+ ..+.+.++.++-+++.+|....-+.....+.+.+.+++.|+.+.....+....+. .+...
T Consensus 147 p~ffRt~psd~~q~----~ai~~li~~f~W~~Vaiv~~d~~yg~~~~~~~~~~~~~~gi~I~~~~~i~~~~~~~~~~~~~ 222 (469)
T cd06365 147 PSLYQMAPKDTSLP----LGMVSLMLHFSWTWVGLVISDDDRGEQFLSDLREEMQRNGICLAFVEKIPVNMQLYLTRAEK 222 (469)
T ss_pred CcceEecCCchhHH----HHHHHHHHhcCCeEEEEEEecChhHHHHHHHHHHHHHHCCeEEEEEEEecCCchhhHHHHHH
Confidence 34555555444332 2345556678888988776655444446688999999999988755545544442 36667
Q ss_pred HHHHhHhcCCCEEEEecC
Q psy2427 99 ATKFVRSVQCDAFIAVGG 116 (660)
Q Consensus 99 ~~~~~~~~~~D~IIavGG 116 (660)
.++.+++.++++||..|-
T Consensus 223 ~l~~i~~~~arvIvl~~~ 240 (469)
T cd06365 223 YYNQIMTSSAKVIIIYGD 240 (469)
T ss_pred HHHHhhcCCCeEEEEEcC
Confidence 777778889999998865
No 187
>PRK03202 6-phosphofructokinase; Provisional
Probab=72.98 E-value=17 Score=38.61 Aligned_cols=50 Identities=20% Similarity=0.297 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCC
Q psy2427 92 TGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSG 166 (660)
Q Consensus 92 ~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~g 166 (660)
+.+..+++++.+++++.|.+|.|||--.++.|..++. + + +|+|.||=|.-
T Consensus 78 ~~~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~~L~e-~--~----------------------i~vigiPkTID 127 (320)
T PRK03202 78 DEEGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTE-H--G----------------------IPVIGLPGTID 127 (320)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHh-c--C----------------------CcEEEeccccc
Confidence 5688999999999999999999999999998877763 1 1 89999999973
No 188
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=72.76 E-value=15 Score=35.22 Aligned_cols=67 Identities=18% Similarity=0.362 Sum_probs=45.6
Q ss_pred hcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHH
Q psy2427 47 NMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKA 125 (660)
Q Consensus 47 ~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~ 125 (660)
+++ +|+-+|+-++... ..+.+.+.| |+++..|. -.+.++++..++.+++.++|+|| ||+.+.+.|+-
T Consensus 75 ~~~-~~Iavv~~~~~~~--~~~~~~~ll---~~~i~~~~----~~~~~e~~~~i~~~~~~G~~viV--Gg~~~~~~A~~ 141 (176)
T PF06506_consen 75 KYG-PKIAVVGYPNIIP--GLESIEELL---GVDIKIYP----YDSEEEIEAAIKQAKAEGVDVIV--GGGVVCRLARK 141 (176)
T ss_dssp CCT-SEEEEEEESS-SC--CHHHHHHHH---T-EEEEEE----ESSHHHHHHHHHHHHHTT--EEE--ESHHHHHHHHH
T ss_pred hcC-CcEEEEecccccH--HHHHHHHHh---CCceEEEE----ECCHHHHHHHHHHHHHcCCcEEE--CCHHHHHHHHH
Confidence 444 7898888877543 247777877 55655443 24588999999999999999885 67777776653
No 189
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=72.74 E-value=28 Score=34.10 Aligned_cols=88 Identities=14% Similarity=0.172 Sum_probs=55.0
Q ss_pred HHHHHHHHhcCCCEEEEEECcc-ccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc-CCCEEEEecC
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPH-LSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV-QCDAFIAVGG 116 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~-~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~-~~D~IIavGG 116 (660)
..+.+++.+.+.+|+.++++.. ........-+.+.+++.++.+......... ..+....+.+.+++. ++|.|+..+.
T Consensus 113 ~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~i~~~~~ 191 (269)
T cd01391 113 EAAAEYLAEKGWKRVALIYGDDGAYGRERLEGFKAALKKAGIEVVAIEYGDLD-TEKGFQALLQLLKAAPKPDAIFACND 191 (269)
T ss_pred HHHHHHHHHhCCceEEEEecCCcchhhHHHHHHHHHHHhcCcEEEeccccCCC-ccccHHHHHHHHhcCCCCCEEEEcCc
Confidence 4467778888889999998766 322334466777888877654422222211 124556666666665 7899999887
Q ss_pred chhhhHHHHHH
Q psy2427 117 GSVIDTCKAAN 127 (660)
Q Consensus 117 GsviD~AK~~a 127 (660)
....-+.+.+.
T Consensus 192 ~~a~~~~~~~~ 202 (269)
T cd01391 192 EMAAGALKAAR 202 (269)
T ss_pred hHHHHHHHHHH
Confidence 54444444443
No 190
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=72.36 E-value=24 Score=38.16 Aligned_cols=86 Identities=13% Similarity=0.180 Sum_probs=58.7
Q ss_pred HHHHHHh-cCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchh
Q psy2427 41 VGMDMVN-MKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSV 119 (660)
Q Consensus 41 l~~~l~~-~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 119 (660)
+.+++.+ .+.+|+.+|.+...+.....+.+.+.+++.|.++.....+. +...+....+..++..++|+|+-.|.+.
T Consensus 151 ~~~~~~~~~~~k~va~i~~d~~~g~~~~~~~~~~~~~~G~~v~~~~~~~--~g~~D~~~~v~~l~~~~~d~v~~~~~~~- 227 (369)
T PRK15404 151 AAKYILEKVKPKRIAVLHDKQQYGEGLARSVKDGLKKAGANVVFFEGIT--AGDKDFSALIAKLKKENVDFVYYGGYHP- 227 (369)
T ss_pred HHHHHHHhcCCCEEEEEeCCCchhHHHHHHHHHHHHHcCCEEEEEEeeC--CCCCchHHHHHHHHhcCCCEEEECCCch-
Confidence 5565543 47799999998776555566788899999999876443343 2345566677788889999988544433
Q ss_pred hhHHHHHHhHh
Q psy2427 120 IDTCKAANLYY 130 (660)
Q Consensus 120 iD~AK~~a~~~ 130 (660)
|++.++-...
T Consensus 228 -~~~~~~k~~~ 237 (369)
T PRK15404 228 -EMGQILRQAR 237 (369)
T ss_pred -HHHHHHHHHH
Confidence 6666654433
No 191
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=72.18 E-value=21 Score=37.81 Aligned_cols=88 Identities=10% Similarity=-0.021 Sum_probs=58.7
Q ss_pred HHHHHHHhcC-CCEEEEEECccccccchHHHHHHHHHh--CCCeEEEEeCcccCCCH-HHHHHHHHHhHhcCCCEEEEec
Q psy2427 40 EVGMDMVNMK-AQRVCVMTDPHLSKLAPVKATLDSLTR--HGVKFELFDKVRVEPTG-DSFLEATKFVRSVQCDAFIAVG 115 (660)
Q Consensus 40 ~l~~~l~~~g-~~r~liVtd~~~~~~~~~~~i~~~L~~--~gi~~~~~~~~~~~p~~-~~v~~~~~~~~~~~~D~IIavG 115 (660)
.+.+++...+ .+|+.+|.....+.....+.+.+.+++ .|+++.....+. ... .+....+..++..++|.|+-.+
T Consensus 132 ~l~~~~~~~~~~k~v~i~~~~~~~g~~~~~~~~~~~~~~~~G~~vv~~~~~~--~~~~~d~~~~i~~l~~~~~d~v~~~~ 209 (342)
T cd06329 132 ALASYIKKQPDGKKVYLINQDYSWGQDVAAAFKAMLAAKRPDIQIVGEDLHP--LGKVKDFSPYVAKIKASGADTVITGN 209 (342)
T ss_pred HHHHHHHhcccCceEEEEeCChHHHHHHHHHHHHHHHhhcCCcEEeceeccC--CCCCCchHHHHHHHHHcCCCEEEEcc
Confidence 3566666655 799999987665555566889999998 888775322221 122 4455567778889999988877
Q ss_pred CchhhhHHHHHHhHhc
Q psy2427 116 GGSVIDTCKAANLYYC 131 (660)
Q Consensus 116 GGsviD~AK~~a~~~~ 131 (660)
.+. |++.++.....
T Consensus 210 ~~~--~~~~~~~~~~~ 223 (342)
T cd06329 210 WGN--DLLLLVKQAAD 223 (342)
T ss_pred cCc--hHHHHHHHHHH
Confidence 554 66666554444
No 192
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=72.12 E-value=38 Score=33.83 Aligned_cols=81 Identities=22% Similarity=0.222 Sum_probs=50.7
Q ss_pred ccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhc
Q psy2427 63 KLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVN 142 (660)
Q Consensus 63 ~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~ 142 (660)
+.+..++....++..|+++..+-++. -.....+...++..+..++|++|.+-|-- .-+--.++-+..
T Consensus 129 DlPvAeEa~~tae~lG~ev~~~~DvG-VAGiHRLl~~l~r~~~~~~~~lIVvAGME-GaLPsvvagLvD----------- 195 (254)
T COG1691 129 DLPVAEEAAVTAEELGVEVQKVYDVG-VAGIHRLLSALKRLKIEDADVLIVVAGME-GALPSVVAGLVD----------- 195 (254)
T ss_pred CcchHHHHHHHHHHhCceEEEEEeec-cchHHhhhhHHHHHHhhCCCeEEEEcccc-cchHHHHHhccC-----------
Confidence 34455777777888899887433332 33444555555677788999999887621 112223333332
Q ss_pred CCCCCCCCCCCCCCcEEEEcCCCCcCc
Q psy2427 143 APIGKGKPVTVPLKPLIAIPTTSGTGS 169 (660)
Q Consensus 143 ~~~~~~~~~~~~~lP~i~IPTt~gtgs 169 (660)
+|+|.|||..|=|.
T Consensus 196 -------------~PVIavPTsVGYG~ 209 (254)
T COG1691 196 -------------VPVIAVPTSVGYGA 209 (254)
T ss_pred -------------CCeEecccccccCc
Confidence 89999999976553
No 193
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=72.10 E-value=26 Score=37.39 Aligned_cols=84 Identities=8% Similarity=0.014 Sum_probs=58.4
Q ss_pred HHHHHHHh-cCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 40 EVGMDMVN-MKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 40 ~l~~~l~~-~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
.+.+++.+ .|.+|+.+++....+.....+.+.+.+++.|+++.....+ .....+....+..++..++|+|+..+.|.
T Consensus 122 ~~~~~~~~~~g~k~vaii~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~--~~~~~D~~~~v~~l~~~~pd~v~~~~~~~ 199 (348)
T cd06355 122 PAVDWLMSNKGGKRFYLVGSDYVYPRTANKILKAQLESLGGEVVGEEYL--PLGHTDFQSIINKIKAAKPDVVVSTVNGD 199 (348)
T ss_pred HHHHHHHhccCCCeEEEECCcchHHHHHHHHHHHHHHHcCCeEEeeEEe--cCChhhHHHHHHHHHHhCCCEEEEeccCC
Confidence 34555654 4689999998776555556678888999999987643222 23457777888888899999988766553
Q ss_pred hhhHHHHHH
Q psy2427 119 VIDTCKAAN 127 (660)
Q Consensus 119 viD~AK~~a 127 (660)
|++.++-
T Consensus 200 --~~~~~~~ 206 (348)
T cd06355 200 --SNVAFFK 206 (348)
T ss_pred --chHHHHH
Confidence 4444443
No 194
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=71.83 E-value=19 Score=41.19 Aligned_cols=81 Identities=15% Similarity=0.181 Sum_probs=56.7
Q ss_pred CcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE
Q psy2427 34 GPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA 113 (660)
Q Consensus 34 G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa 113 (660)
|-|.+..|. ..++++ .|+-||+-++... .++.+.+.| ++++..+. --+.++++..++.+++.++++||
T Consensus 93 ~~Dil~al~-~a~~~~-~~iavv~~~~~~~--~~~~~~~~l---~~~i~~~~----~~~~~e~~~~v~~lk~~G~~~vv- 160 (538)
T PRK15424 93 GFDVMQALA-RARKLT-SSIGVVTYQETIP--ALVAFQKTF---NLRIEQRS----YVTEEDARGQINELKANGIEAVV- 160 (538)
T ss_pred HhHHHHHHH-HHHhcC-CcEEEEecCcccH--HHHHHHHHh---CCceEEEE----ecCHHHHHHHHHHHHHCCCCEEE-
Confidence 445554442 235555 6888888777543 336677777 44444332 35688999999999999999997
Q ss_pred ecCchhhhHHHHHH
Q psy2427 114 VGGGSVIDTCKAAN 127 (660)
Q Consensus 114 vGGGsviD~AK~~a 127 (660)
|||.+.|+|+-+.
T Consensus 161 -G~~~~~~~A~~~g 173 (538)
T PRK15424 161 -GAGLITDLAEEAG 173 (538)
T ss_pred -cCchHHHHHHHhC
Confidence 9999999998654
No 195
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=71.72 E-value=9.4 Score=40.03 Aligned_cols=74 Identities=16% Similarity=0.257 Sum_probs=42.1
Q ss_pred EEEEEECccccc-cchHHHHHHHHHhCCCeEEEEeCcccCCC--------HHHHHHHHHHhHhcCCCEEEEecC-chhhh
Q psy2427 52 RVCVMTDPHLSK-LAPVKATLDSLTRHGVKFELFDKVRVEPT--------GDSFLEATKFVRSVQCDAFIAVGG-GSVID 121 (660)
Q Consensus 52 r~liVtd~~~~~-~~~~~~i~~~L~~~gi~~~~~~~~~~~p~--------~~~v~~~~~~~~~~~~D~IIavGG-GsviD 121 (660)
++.||..+.-.+ ....+++.+.|++.|+++.+.......-. ....... +. ...++|+||++|| |+.+-
T Consensus 2 ~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~dlvi~lGGDGT~L~ 79 (292)
T PRK01911 2 KIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDN-EE-LDGSADMVISIGGDGTFLR 79 (292)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccch-hh-cccCCCEEEEECCcHHHHH
Confidence 466676544222 23568888889999998876432110000 0000000 11 1236899999999 88888
Q ss_pred HHHHHH
Q psy2427 122 TCKAAN 127 (660)
Q Consensus 122 ~AK~~a 127 (660)
+++.++
T Consensus 80 aa~~~~ 85 (292)
T PRK01911 80 TATYVG 85 (292)
T ss_pred HHHHhc
Confidence 777664
No 196
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=71.61 E-value=11 Score=39.22 Aligned_cols=71 Identities=17% Similarity=0.202 Sum_probs=40.2
Q ss_pred EEEEEECccc-cccchHHHHHHHHHhCCCeEEEEeCcccC-CCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHH
Q psy2427 52 RVCVMTDPHL-SKLAPVKATLDSLTRHGVKFELFDKVRVE-PTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCK 124 (660)
Q Consensus 52 r~liVtd~~~-~~~~~~~~i~~~L~~~gi~~~~~~~~~~~-p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK 124 (660)
|+.||....- ......+++.+.|++.|+++.+....... ...... ......+.++|+||++|| |+.+-++.
T Consensus 2 ~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~--~~~~~~~~~~d~vi~iGGDGTlL~a~~ 75 (277)
T PRK03708 2 RFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEE--DVLPLEEMDVDFIIAIGGDGTILRIEH 75 (277)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccc--ccccccccCCCEEEEEeCcHHHHHHHH
Confidence 5667765442 22235688999999999998875321111 101000 001222347899999999 45554554
No 197
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=71.47 E-value=17 Score=38.72 Aligned_cols=87 Identities=17% Similarity=0.102 Sum_probs=59.5
Q ss_pred HHHHHHHh-cCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 40 EVGMDMVN-MKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 40 ~l~~~l~~-~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
.+.+++.+ .+.+|+.+++....+.....+.+.+.+++.|+++.....+. +...+....+..+++.++|.|+-.|.+.
T Consensus 127 ~~a~~~~~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~--~~~~d~s~~i~~i~~~~~d~v~~~~~~~ 204 (347)
T cd06335 127 FLVDEAVKRGGFKKVALLLDNTGWGRSNRKDLTAALAARGLKPVAVEWFN--WGDKDMTAQLLRAKAAGADAIIIVGNGP 204 (347)
T ss_pred HHHHHHHHhcCCCeEEEEeccCchhhhHHHHHHHHHHHcCCeeEEEeeec--CCCccHHHHHHHHHhCCCCEEEEEecCh
Confidence 35566544 44799999998776655567889999999999876433333 2345666777888888999998887553
Q ss_pred hhhHHHHHHhHh
Q psy2427 119 VIDTCKAANLYY 130 (660)
Q Consensus 119 viD~AK~~a~~~ 130 (660)
|.+.++....
T Consensus 205 --~~~~~~~~~~ 214 (347)
T cd06335 205 --EGAQIANGMA 214 (347)
T ss_pred --HHHHHHHHHH
Confidence 4555554333
No 198
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=71.23 E-value=30 Score=36.65 Aligned_cols=87 Identities=7% Similarity=-0.015 Sum_probs=58.1
Q ss_pred HHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchh
Q psy2427 40 EVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSV 119 (660)
Q Consensus 40 ~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 119 (660)
.+.+++.+.+.+|+.+|+....+.....+.+.+.+++.|+++.....+ .+...+....+..++..++|.|+-.+-|.
T Consensus 122 ~~~~~~~~~~~~~vail~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~--~~~~~d~~~~v~~l~~~~pd~v~~~~~~~- 198 (334)
T cd06356 122 TLVPYMMEKYGKKVYTIAADYNFGQISAEWVRKIVEENGGEVVGEEFI--PLDVSDFGSTIQKIQAAKPDFVMSILVGA- 198 (334)
T ss_pred HHHHHHHHccCCeEEEECCCchhhHHHHHHHHHHHHHcCCEEEeeeec--CCCchhHHHHHHHHHhcCCCEEEEeccCC-
Confidence 356666665448888887655454445577888999999887633333 34466788888899999999998765443
Q ss_pred hhHHHHHHhHh
Q psy2427 120 IDTCKAANLYY 130 (660)
Q Consensus 120 iD~AK~~a~~~ 130 (660)
|.+.++....
T Consensus 199 -~~~~~~~~~~ 208 (334)
T cd06356 199 -NHLSFYRQWA 208 (334)
T ss_pred -cHHHHHHHHH
Confidence 3444444333
No 199
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=71.15 E-value=34 Score=36.05 Aligned_cols=65 Identities=15% Similarity=0.224 Sum_probs=46.7
Q ss_pred CEEEEEECcccc---ccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchh
Q psy2427 51 QRVCVMTDPHLS---KLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSV 119 (660)
Q Consensus 51 ~r~liVtd~~~~---~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 119 (660)
+++.++..+..- ....++++.+.|++.|.++.++.-. .. ....++++.+...+.|.||+.||==.
T Consensus 3 ~~~~~i~Np~sG~~~~~~~~~~~~~~l~~~g~~~~~~~t~--~~--g~a~~~a~~a~~~~~D~via~GGDGT 70 (301)
T COG1597 3 KKALLIYNPTSGKGKAKKLLREVEELLEEAGHELSVRVTE--EA--GDAIEIAREAAVEGYDTVIAAGGDGT 70 (301)
T ss_pred ceEEEEEcccccccchhhHHHHHHHHHHhcCCeEEEEEee--cC--ccHHHHHHHHHhcCCCEEEEecCcch
Confidence 678888876432 1235688999999999987765321 11 56777777777779999999999544
No 200
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=71.00 E-value=31 Score=36.35 Aligned_cols=83 Identities=12% Similarity=0.032 Sum_probs=56.5
Q ss_pred HHHHHH-hcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchh
Q psy2427 41 VGMDMV-NMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSV 119 (660)
Q Consensus 41 l~~~l~-~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 119 (660)
+..++. ..|.+++.++++...+.....+.+.+.+++.|+++..-..+ .+...+....+..+++.++|+|+..+.+.
T Consensus 122 ~~~~~~~~~g~~~v~i~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~--~~~~~d~~~~v~~l~~~~pd~v~~~~~~~- 198 (333)
T cd06358 122 AIPWLAEEKGARRWYLIGNDYVWPRGSLAAAKRYIAELGGEVVGEEYV--PLGTTDFTSVLERIAASGADAVLSTLVGQ- 198 (333)
T ss_pred HHHHHHHhcCCCeEEEEeccchhhHHHHHHHHHHHHHcCCEEeeeeee--cCChHHHHHHHHHHHHcCCCEEEEeCCCC-
Confidence 344443 35779999998876554445577788899999987532222 34567788888899999999998765542
Q ss_pred hhHHHHHH
Q psy2427 120 IDTCKAAN 127 (660)
Q Consensus 120 iD~AK~~a 127 (660)
|.+.++.
T Consensus 199 -~~~~~~~ 205 (333)
T cd06358 199 -DAVAFNR 205 (333)
T ss_pred -chHHHHH
Confidence 3444443
No 201
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=70.87 E-value=19 Score=38.64 Aligned_cols=84 Identities=11% Similarity=-0.001 Sum_probs=56.7
Q ss_pred HHHHHHh-cCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchh
Q psy2427 41 VGMDMVN-MKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSV 119 (660)
Q Consensus 41 l~~~l~~-~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 119 (660)
+.+++.+ .|.+|+.+++....+.....+.+.+.+++.|+++..-.. -.+...+....+..++..++|+|+..+.|.
T Consensus 124 ~~~~~~~~~g~k~v~~l~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~--~~~~~~D~s~~v~~l~~~~pDav~~~~~~~- 200 (359)
T TIGR03407 124 AVDYLLSKKGAKRFFLLGSDYVFPRTANKIIKAYLKSLGGTVVGEDY--TPLGHTDFQTIINKIKAFKPDVVFNTLNGD- 200 (359)
T ss_pred HHHHHHhccCCceEEEecCccHHHHHHHHHHHHHHHHcCCEEEeeEE--ecCChHhHHHHHHHHHHhCCCEEEEeccCC-
Confidence 4455655 488999999876544444556688899999988753222 234567788888999999999988655442
Q ss_pred hhHHHHHHh
Q psy2427 120 IDTCKAANL 128 (660)
Q Consensus 120 iD~AK~~a~ 128 (660)
|.+.++..
T Consensus 201 -~~~~~~~~ 208 (359)
T TIGR03407 201 -SNVAFFKQ 208 (359)
T ss_pred -CHHHHHHH
Confidence 34444443
No 202
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=70.68 E-value=21 Score=34.20 Aligned_cols=82 Identities=12% Similarity=0.090 Sum_probs=52.9
Q ss_pred EEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhC--CCeEEEEeCcccCCCHHHHHHHHHHhHhcCC
Q psy2427 31 IRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRH--GVKFELFDKVRVEPTGDSFLEATKFVRSVQC 108 (660)
Q Consensus 31 i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~--gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~ 108 (660)
-+-|.+.+..+-+.+.+.+ .|++++.+..- ..+++.+.|++. |+.+.-+.. +.-..+.-.++++.+++.++
T Consensus 28 r~~g~dl~~~ll~~~~~~~-~~v~llG~~~~----~~~~~~~~l~~~yp~l~i~g~~~--g~~~~~~~~~i~~~I~~~~p 100 (171)
T cd06533 28 RVTGSDLMPALLELAAQKG-LRVFLLGAKPE----VLEKAAERLRARYPGLKIVGYHH--GYFGPEEEEEIIERINASGA 100 (171)
T ss_pred ccCcHHHHHHHHHHHHHcC-CeEEEECCCHH----HHHHHHHHHHHHCCCcEEEEecC--CCCChhhHHHHHHHHHHcCC
Confidence 3457787888877777766 78998876542 235566666654 555443221 22234455558999999999
Q ss_pred C-EEEEecCchh
Q psy2427 109 D-AFIAVGGGSV 119 (660)
Q Consensus 109 D-~IIavGGGsv 119 (660)
| ++||+|-..=
T Consensus 101 div~vglG~PkQ 112 (171)
T cd06533 101 DILFVGLGAPKQ 112 (171)
T ss_pred CEEEEECCCCHH
Confidence 9 5677776654
No 203
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=69.83 E-value=22 Score=39.06 Aligned_cols=103 Identities=6% Similarity=0.001 Sum_probs=64.4
Q ss_pred eeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCH-----HHH
Q psy2427 22 YAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTG-----DSF 96 (660)
Q Consensus 22 ~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~-----~~v 96 (660)
+-|+..|+....+ ..+.+.++.+|-+++.+|.+..-+.....+.+.+.+++.|+.+.....+....+. ...
T Consensus 148 ~ffRt~p~D~~qa----~ai~~li~~~~w~~Vaii~~~d~yG~~~~~~f~~~~~~~GicIa~~e~~~~~~~~~~~~~~~~ 223 (403)
T cd06361 148 SFLRTVPSDFYQT----KAMAHLIKKSGWNWVGIIITDDDYGRSALETFIIQAEANGVCIAFKEILPASLSDNTKLNRII 223 (403)
T ss_pred CeeECCCchHhHH----HHHHHHHHHcCCcEEEEEEecCchHHHHHHHHHHHHHHCCeEEEEEEEecCccCcchhHHHHH
Confidence 4555554443222 2255667777889999998766655556789999999999887643333332221 233
Q ss_pred HHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHh
Q psy2427 97 LEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYY 130 (660)
Q Consensus 97 ~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~ 130 (660)
....+.++..++|+||..|- .-|+..++....
T Consensus 224 ~~~~~~ik~~~a~vVvv~~~--~~~~~~l~~~a~ 255 (403)
T cd06361 224 RTTEKIIEENKVNVIVVFAR--QFHVFLLFNKAI 255 (403)
T ss_pred HHHHHHHhcCCCeEEEEEeC--hHHHHHHHHHHH
Confidence 34445577889999998654 445666554433
No 204
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=69.65 E-value=29 Score=34.37 Aligned_cols=77 Identities=13% Similarity=0.226 Sum_probs=52.2
Q ss_pred HHHHHHhcCCCEEEEEECccccccc--hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 41 VGMDMVNMKAQRVCVMTDPHLSKLA--PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 41 l~~~l~~~g~~r~liVtd~~~~~~~--~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
+.++++..+ +++..|=..+..+.. +.++..+.|++.|+++...+-. .++.+.|+.-+.. +| +|.||||-
T Consensus 24 i~n~l~g~~-~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~--~~~~~~Ie~~l~~-----~d-~IyVgGGN 94 (224)
T COG3340 24 IANFLQGKR-KTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLS--KPPLAAIENKLMK-----AD-IIYVGGGN 94 (224)
T ss_pred HHHHhcCCC-ceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeecc--CCCHHHHHHhhhh-----cc-EEEECCch
Confidence 344444443 588888776654443 7899999999999987755443 5666666554332 23 68899999
Q ss_pred hhhHHHHH
Q psy2427 119 VIDTCKAA 126 (660)
Q Consensus 119 viD~AK~~ 126 (660)
.-++=+..
T Consensus 95 TF~LL~~l 102 (224)
T COG3340 95 TFNLLQEL 102 (224)
T ss_pred HHHHHHHH
Confidence 98887654
No 205
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=69.63 E-value=12 Score=32.01 Aligned_cols=54 Identities=7% Similarity=0.111 Sum_probs=37.3
Q ss_pred CEEEEEECccccccch-HHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEe
Q psy2427 51 QRVCVMTDPHLSKLAP-VKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAV 114 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~-~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIav 114 (660)
+|+++||+.++..+-. ..++++.|++.|+++.+.. .+..++.. .. .++|+||.-
T Consensus 3 ~kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~-----~~~~e~~~---~~--~~~D~iv~t 57 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQ-----CRVNEIET---YM--DGVHLICTT 57 (94)
T ss_pred CeEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEE-----ecHHHHhh---hc--CCCCEEEEC
Confidence 4899999998765544 5899999999999876532 34444432 22 467988753
No 206
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=69.38 E-value=12 Score=39.76 Aligned_cols=78 Identities=8% Similarity=-0.019 Sum_probs=54.0
Q ss_pred CCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHh
Q psy2427 49 KAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANL 128 (660)
Q Consensus 49 g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~ 128 (660)
+.+|+.+|++...+.....+.+.+.+++.|+++..-..+. +...+....+..+++.++|+|+-.+. .-|.+.++-.
T Consensus 143 ~~~~v~~l~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~--~~~~d~~~~i~~l~~~~~d~v~~~~~--~~~~~~~~~~ 218 (347)
T cd06340 143 PLKTVALVHEDTEFGTSVAEAIKKFAKERGFEIVEDISYP--ANARDLTSEVLKLKAANPDAILPASY--TNDAILLVRT 218 (347)
T ss_pred CCceEEEEecCchHhHHHHHHHHHHHHHcCCEEEEeeccC--CCCcchHHHHHHHHhcCCCEEEEccc--chhHHHHHHH
Confidence 4589999998776655566888889999998876322332 23446667777788889998886544 4566666544
Q ss_pred Hh
Q psy2427 129 YY 130 (660)
Q Consensus 129 ~~ 130 (660)
..
T Consensus 219 ~~ 220 (347)
T cd06340 219 MK 220 (347)
T ss_pred HH
Confidence 33
No 207
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=69.28 E-value=11 Score=39.77 Aligned_cols=75 Identities=11% Similarity=0.070 Sum_probs=42.9
Q ss_pred CEEEEEECccccc-cchHHHHHHHHHhCCCeEEEEeCcccCCCHHH---------HHHH-HHHhHhcCCCEEEEecC-ch
Q psy2427 51 QRVCVMTDPHLSK-LAPVKATLDSLTRHGVKFELFDKVRVEPTGDS---------FLEA-TKFVRSVQCDAFIAVGG-GS 118 (660)
Q Consensus 51 ~r~liVtd~~~~~-~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~---------v~~~-~~~~~~~~~D~IIavGG-Gs 118 (660)
+++.|+..+.-.+ .....++.+.|++.|+++.+.......-.... .... .... ..++|+||.+|| |+
T Consensus 2 ~~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Dlvi~iGGDGT 80 (305)
T PRK02649 2 PKAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGF-DSSMKFAIVLGGDGT 80 (305)
T ss_pred CEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhc-ccCcCEEEEEeCcHH
Confidence 5678887654322 23568888899999998876432100000000 0000 0111 236899999999 88
Q ss_pred hhhHHHHH
Q psy2427 119 VIDTCKAA 126 (660)
Q Consensus 119 viD~AK~~ 126 (660)
.+-+++..
T Consensus 81 lL~aar~~ 88 (305)
T PRK02649 81 VLSAARQL 88 (305)
T ss_pred HHHHHHHh
Confidence 88766654
No 208
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=69.26 E-value=27 Score=34.57 Aligned_cols=86 Identities=14% Similarity=0.162 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCCCEEEEEECccc--cccchHHHHHHHHHhCC-CeEEEEeCcccCCCHHHHHHHHHHhHhcC--CCEEEE
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHL--SKLAPVKATLDSLTRHG-VKFELFDKVRVEPTGDSFLEATKFVRSVQ--CDAFIA 113 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~--~~~~~~~~i~~~L~~~g-i~~~~~~~~~~~p~~~~v~~~~~~~~~~~--~D~IIa 113 (660)
..+.+++.+.|.+|+.++.+..- ......+-+.+.+++.+ +.... ......+.+...+.+..+.+.+ +|+|++
T Consensus 107 ~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~ 184 (264)
T cd01537 107 YLAGEHLAEKGHRRIALLAGPLGSSTARERVAGFKDALKEAGPIEIVL--VQEGDWDAEKGYQAAEELLTAHPDPTAIFA 184 (264)
T ss_pred HHHHHHHHHhcCCcEEEEECCCCCCcHHHHHHHHHHHHHHcCCcChhh--hccCCCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 45677888888899999987543 21223456677777766 33221 1222345555555555555544 799999
Q ss_pred ecCchhhhHHHHH
Q psy2427 114 VGGGSVIDTCKAA 126 (660)
Q Consensus 114 vGGGsviD~AK~~ 126 (660)
.+......+.+++
T Consensus 185 ~~~~~a~~~~~~~ 197 (264)
T cd01537 185 ANDDMALGALRAL 197 (264)
T ss_pred cCcHHHHHHHHHH
Confidence 9887666555544
No 209
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=69.10 E-value=13 Score=39.92 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC
Q psy2427 92 TGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS 165 (660)
Q Consensus 92 ~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~ 165 (660)
+.+..+++++.+++++.|.+|.|||--.++.|..++..+.+. ...+|+|.||=|.
T Consensus 77 ~~~~~~~~~~~l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~-------------------~~~i~vigiPkTI 131 (338)
T cd00363 77 TEEGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSK-------------------YQGFNVIGLPGTI 131 (338)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHhc-------------------CCCccEEEeeecc
Confidence 577899999999999999999999999999998887654321 0118999999886
No 210
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=68.97 E-value=21 Score=40.71 Aligned_cols=80 Identities=14% Similarity=0.172 Sum_probs=55.4
Q ss_pred CcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE
Q psy2427 34 GPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA 113 (660)
Q Consensus 34 G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa 113 (660)
|-|.+..|. ..++++ +|+.||+-++... .++.+.+.| ++++..+. --+.++++..++.+++.|+++||
T Consensus 83 ~~Dil~al~-~a~~~~-~~ia~vg~~~~~~--~~~~~~~ll---~~~i~~~~----~~~~~e~~~~~~~l~~~G~~~vi- 150 (526)
T TIGR02329 83 GFDVMQALA-RARRIA-SSIGVVTHQDTPP--ALRRFQAAF---NLDIVQRS----YVTEEDARSCVNDLRARGIGAVV- 150 (526)
T ss_pred hhhHHHHHH-HHHhcC-CcEEEEecCcccH--HHHHHHHHh---CCceEEEE----ecCHHHHHHHHHHHHHCCCCEEE-
Confidence 445554443 235555 6888888777543 336677777 44444332 34688999999999999999997
Q ss_pred ecCchhhhHHHHH
Q psy2427 114 VGGGSVIDTCKAA 126 (660)
Q Consensus 114 vGGGsviD~AK~~ 126 (660)
||+.+.|.|+-.
T Consensus 151 -G~~~~~~~A~~~ 162 (526)
T TIGR02329 151 -GAGLITDLAEQA 162 (526)
T ss_pred -CChHHHHHHHHc
Confidence 899999998854
No 211
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=68.80 E-value=15 Score=38.83 Aligned_cols=86 Identities=12% Similarity=0.043 Sum_probs=58.5
Q ss_pred HHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhh
Q psy2427 41 VGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVI 120 (660)
Q Consensus 41 l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsvi 120 (660)
+.+++.+.+.+|+.++.....+.....+.+.+.+++.|+++..-..+ .+...+....+..+++.++|.|+-.+.|.
T Consensus 126 ~~~~~~~~~~~~v~~i~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~--~~~~~d~~~~v~~l~~~~~d~v~~~~~~~-- 201 (334)
T cd06327 126 TAPALVKAGGKKWFFLTADYAFGHSLERDARKVVKANGGKVVGSVRH--PLGTSDFSSYLLQAQASGADVLVLANAGA-- 201 (334)
T ss_pred HHHHHHHhcCCeEEEEecchHHhHHHHHHHHHHHHhcCCEEcCcccC--CCCCccHHHHHHHHHhCCCCEEEEeccch--
Confidence 55666666779999998776655556688888999999887532222 23345566777778888999888876553
Q ss_pred hHHHHHHhHh
Q psy2427 121 DTCKAANLYY 130 (660)
Q Consensus 121 D~AK~~a~~~ 130 (660)
|.+.++....
T Consensus 202 ~~~~~~~~~~ 211 (334)
T cd06327 202 DTVNAIKQAA 211 (334)
T ss_pred hHHHHHHHHH
Confidence 5555554333
No 212
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=68.52 E-value=17 Score=34.58 Aligned_cols=76 Identities=14% Similarity=0.135 Sum_probs=48.8
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEe---------CcccCCCHHHHHHHHHHhHh----
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFD---------KVRVEPTGDSFLEATKFVRS---- 105 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~---------~~~~~p~~~~v~~~~~~~~~---- 105 (660)
+++.+.|++ .+|++|+.|.........+.+.+..+..++.+..-. ++..+| -.+-.+....++
T Consensus 18 ~~aa~lLk~--AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~~~~~~~kgv~~~~--~~lg~~g~~~~~p~~e 93 (162)
T TIGR00315 18 KLVAMMIKR--AKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADTYRALIEAGIESEE--MNLHEITQFLADPSWE 93 (162)
T ss_pred HHHHHHHHc--CCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCccccccccCCeecCC--CCHHHHHHhccCchhh
Confidence 456666664 389999999887654566888888888888766321 122233 333344444444
Q ss_pred -----cCCCEEEEecCch
Q psy2427 106 -----VQCDAFIAVGGGS 118 (660)
Q Consensus 106 -----~~~D~IIavGGGs 118 (660)
.++|+||-+|---
T Consensus 94 ~~~g~g~~DlvlfvG~~~ 111 (162)
T TIGR00315 94 GFDGEGNYDLVLFLGIIY 111 (162)
T ss_pred hccCCCCcCEEEEeCCcc
Confidence 6789999997554
No 213
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=68.14 E-value=5 Score=41.76 Aligned_cols=81 Identities=15% Similarity=0.235 Sum_probs=49.3
Q ss_pred hHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHh-CCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEec
Q psy2427 37 VTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTR-HGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVG 115 (660)
Q Consensus 37 ~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~-~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavG 115 (660)
++.+..+.+..++.+++.+|+...+++..-.+.+.+.+++ .|+++.+.++-+ +..+.- ..+...+...+.-+||=||
T Consensus 43 ~L~~f~~~~~~~~v~~i~~vATsA~R~A~N~~~~~~~i~~~tGi~i~iIsgee-Ea~l~~-~gv~~~l~~~~~~lviDIG 120 (285)
T PF02541_consen 43 ALKRFKEILKDYGVEKIRAVATSALREAKNSDEFLDRIKKETGIDIEIISGEE-EARLSF-LGVLSSLPPDKNGLVIDIG 120 (285)
T ss_dssp HHHHHHHHHHHTTGSEEEEEEEHHHHHSTTHHHHHHHHHHHHSS-EEEE-HHH-HHHHHH-HHHHHHSTTTSSEEEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEEEhhHHHHhCcCHHHHHHHHHHHhCCceEEecHHH-HHHHHH-HHHHhhccccCCEEEEEEC
Confidence 3455566677889999999998887766444666666654 599999886532 221111 1111222223334899999
Q ss_pred Cchh
Q psy2427 116 GGSV 119 (660)
Q Consensus 116 GGsv 119 (660)
|||+
T Consensus 121 GGSt 124 (285)
T PF02541_consen 121 GGST 124 (285)
T ss_dssp SSEE
T ss_pred CCce
Confidence 9997
No 214
>PLN02929 NADH kinase
Probab=67.58 E-value=15 Score=38.70 Aligned_cols=49 Identities=22% Similarity=0.317 Sum_probs=33.1
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHH
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAA 126 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~ 126 (660)
.++.+.+.|++.|+++......+ + .-...++|+||++|| |+.+-+++.+
T Consensus 35 ~~~~~~~~L~~~gi~~~~v~r~~-------~-----~~~~~~~Dlvi~lGGDGT~L~aa~~~ 84 (301)
T PLN02929 35 TVNFCKDILQQKSVDWECVLRNE-------L-----SQPIRDVDLVVAVGGDGTLLQASHFL 84 (301)
T ss_pred HHHHHHHHHHHcCCEEEEeeccc-------c-----ccccCCCCEEEEECCcHHHHHHHHHc
Confidence 55889999999999875443211 0 011146899999999 7777666654
No 215
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=67.29 E-value=26 Score=37.34 Aligned_cols=87 Identities=11% Similarity=0.032 Sum_probs=59.5
Q ss_pred HHHHHHH-hcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 40 EVGMDMV-NMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 40 ~l~~~l~-~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
.+.+++. +.|.+|+.+|.....+.....+.+.+.+++.|+++.....+. +...+....+..++..++|+|+..+.+.
T Consensus 133 ~~~~~~~~~~g~~~v~ii~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~--~~~~d~~~~v~~i~~~~~d~v~~~~~~~ 210 (362)
T cd06343 133 IYAKYLVEEKPNAKIAVLYQNDDFGKDYLKGLKDGLGDAGLEIVAETSYE--VTEPDFDSQVAKLKAAGADVVVLATTPK 210 (362)
T ss_pred HHHHHHHHhCCCceEEEEEeccHHHHHHHHHHHHHHHHcCCeEEEEeeec--CCCccHHHHHHHHHhcCCCEEEEEcCcH
Confidence 3556554 457789999987765554566888999999999866433333 3345667778888889999999887663
Q ss_pred hhhHHHHHHhHh
Q psy2427 119 VIDTCKAANLYY 130 (660)
Q Consensus 119 viD~AK~~a~~~ 130 (660)
|.+.++....
T Consensus 211 --~~~~~~~~~~ 220 (362)
T cd06343 211 --FAAQAIRKAA 220 (362)
T ss_pred --HHHHHHHHHH
Confidence 4555544333
No 216
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=67.15 E-value=39 Score=34.13 Aligned_cols=77 Identities=6% Similarity=0.051 Sum_probs=56.6
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
..+.+.++.+|-+++.+|++..-......+.+.+.+++.++.+.....+.. ........++.+++.++++||..+.+
T Consensus 129 ~a~~~~l~~~~w~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~l~~l~~~~~~viv~~~~~ 205 (298)
T cd06269 129 QAIVDLLKHFGWTWVGLVYSDDDYGRRLLELLEEELEKNGICVAFVESIPD--GSEDIRRLLKELKSSTARVIVVFSSE 205 (298)
T ss_pred HHHHHHHHHCCCeEEEEEEecchhhHHHHHHHHHHHHHCCeeEEEEEEcCC--CHHHHHHHHHHHHhcCCcEEEEEech
Confidence 446778888888999999987654444556777778777777665443332 23788888999999889999999774
No 217
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=67.06 E-value=29 Score=36.66 Aligned_cols=84 Identities=11% Similarity=0.080 Sum_probs=55.4
Q ss_pred HHHHhc-CCCEEEEEECcc-ccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhh
Q psy2427 43 MDMVNM-KAQRVCVMTDPH-LSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVI 120 (660)
Q Consensus 43 ~~l~~~-g~~r~liVtd~~-~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsvi 120 (660)
..+... |.+++.++++.. .+.....+.+.+.+++.|+++.....+. ++..+....+..+++.++|.||-.+.+ -
T Consensus 128 ~~~~~~~~~~~v~~l~~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~--~~~~d~~~~v~~i~~~~~d~vi~~~~~--~ 203 (344)
T cd06348 128 AALKLNPGIKRVAVFYAQDDAFSVSETEIFQKALRDQGLNLVTVQTFQ--TGDTDFQAQITAVLNSKPDLIVISALA--A 203 (344)
T ss_pred HHHHHhcCCeEEEEEEeCCchHHHHHHHHHHHHHHHcCCEEEEEEeeC--CCCCCHHHHHHHHHhcCCCEEEECCcc--h
Confidence 334455 778998887543 2444466888999999999876433332 234566777788899999988866554 3
Q ss_pred hHHHHHHhHh
Q psy2427 121 DTCKAANLYY 130 (660)
Q Consensus 121 D~AK~~a~~~ 130 (660)
|++.++-...
T Consensus 204 ~~~~~~~~~~ 213 (344)
T cd06348 204 DGGNLVRQLR 213 (344)
T ss_pred hHHHHHHHHH
Confidence 5565554433
No 218
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=67.04 E-value=36 Score=35.19 Aligned_cols=88 Identities=16% Similarity=0.115 Sum_probs=60.4
Q ss_pred HHHHHHHHhcCCCE-EEEEECccccccc--hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCC--EEEE
Q psy2427 39 REVGMDMVNMKAQR-VCVMTDPHLSKLA--PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCD--AFIA 113 (660)
Q Consensus 39 ~~l~~~l~~~g~~r-~liVtd~~~~~~~--~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D--~IIa 113 (660)
.++.++|.+.|.+| +++++++.-.... ..+=.++.|++.|+++....-.....+.+.-.++++.+.+.++| +||+
T Consensus 107 ~~a~~~Li~~Gh~~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl~~~~~~i~~~~~~~~~g~~~~~~ll~~~p~idai~~ 186 (279)
T PF00532_consen 107 YEATEYLIKKGHRRPIAFIGGPEDSSTSRERLQGYRDALKEAGLPIDEEWIFEGDFDYESGYEAARELLESHPDIDAIFC 186 (279)
T ss_dssp HHHHHHHHHTTCCSTEEEEEESTTTHHHHHHHHHHHHHHHHTTSCEEEEEEEESSSSHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred HHHHHHHHhcccCCeEEEEecCcchHHHHHHHHHHHHHHHHcCCCCCcccccccCCCHHHHHHHHHHHHhhCCCCEEEEE
Confidence 46778888999999 8888886533221 12336788999998554333344567888888888888777776 9999
Q ss_pred ecCchhhhHHHHH
Q psy2427 114 VGGGSVIDTCKAA 126 (660)
Q Consensus 114 vGGGsviD~AK~~ 126 (660)
...-.++-+-+++
T Consensus 187 ~nd~~A~ga~~~l 199 (279)
T PF00532_consen 187 ANDMMAIGAIRAL 199 (279)
T ss_dssp SSHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHH
Confidence 7665555444444
No 219
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=66.91 E-value=24 Score=37.25 Aligned_cols=87 Identities=7% Similarity=-0.029 Sum_probs=57.7
Q ss_pred HHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchh
Q psy2427 40 EVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSV 119 (660)
Q Consensus 40 ~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 119 (660)
.+.+++.+.+.+|+.+|.....+.....+.+.+.+++.|.++.....++ +...+....+..++..++|.|+-.|.+
T Consensus 122 ~~~~~~~~~~~~~v~il~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~--~~~~d~~~~v~~~~~~~~d~v~~~~~~-- 197 (333)
T cd06331 122 PLIPYLMEKYGKRFYLIGSDYVWPRESNRIARALLEELGGEVVGEEYLP--LGTSDFGSVIEKIKAAGPDVVLSTLVG-- 197 (333)
T ss_pred HHHHHHHHhcCCeEEEECCCchhHHHHHHHHHHHHHHcCCEEEEEEEec--CCcccHHHHHHHHHHcCCCEEEEecCC--
Confidence 3556665555689999987665544456788889999998876333332 335667778888888999998876554
Q ss_pred hhHHHHHHhHh
Q psy2427 120 IDTCKAANLYY 130 (660)
Q Consensus 120 iD~AK~~a~~~ 130 (660)
-|.+.++-...
T Consensus 198 ~~~~~~~~~~~ 208 (333)
T cd06331 198 DSNVAFYRQFA 208 (333)
T ss_pred CChHHHHHHHH
Confidence 34444443333
No 220
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=66.87 E-value=44 Score=34.86 Aligned_cols=87 Identities=14% Similarity=0.082 Sum_probs=55.1
Q ss_pred HHHHHHH-hcCCCEEEEEECcc-ccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 40 EVGMDMV-NMKAQRVCVMTDPH-LSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 40 ~l~~~l~-~~g~~r~liVtd~~-~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
.+..++. .++.+++.+|++.. -......+.+...+++.|+++.....+. +...+....++.++..++|.|+-.+.+
T Consensus 124 ~~~~~~~~~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~--~~~~d~~~~~~~~~~~~~d~i~~~~~~ 201 (334)
T cd06347 124 VMAKFATENLKAKKAAVLYDNSSDYSKGLAKAFKEAFKKLGGEIVAEETFN--AGDTDFSAQLTKIKAKNPDVIFLPGYY 201 (334)
T ss_pred HHHHHHHHhcCCcEEEEEEeCCCchhHHHHHHHHHHHHHcCCEEEEEEEec--CCCCcHHHHHHHHHhcCCCEEEEcCch
Confidence 3556653 45678999998543 2222344678888988898775332222 223446677777788899998887766
Q ss_pred hhhhHHHHHHhHh
Q psy2427 118 SVIDTCKAANLYY 130 (660)
Q Consensus 118 sviD~AK~~a~~~ 130 (660)
. +++.++....
T Consensus 202 ~--~~~~~~~~~~ 212 (334)
T cd06347 202 T--EVGLIAKQAR 212 (334)
T ss_pred h--hHHHHHHHHH
Confidence 5 5666654433
No 221
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=66.53 E-value=17 Score=38.71 Aligned_cols=49 Identities=20% Similarity=0.340 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCC
Q psy2427 93 GDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSG 166 (660)
Q Consensus 93 ~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~g 166 (660)
.+..+++++.+++.+.|.+|-|||--.++.|..++. .+ +|+|.||-|.-
T Consensus 80 ~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~~---~g----------------------i~vigiPkTID 128 (324)
T TIGR02483 80 EDGDDKIVANLKELGLDALIAIGGDGTLGIARRLAD---KG----------------------LPVVGVPKTID 128 (324)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHh---cC----------------------CCEEeeccccC
Confidence 478999999999999999999999999998876542 11 89999999973
No 222
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=66.13 E-value=24 Score=38.27 Aligned_cols=74 Identities=19% Similarity=0.202 Sum_probs=56.1
Q ss_pred HHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC-CCEEEEecC
Q psy2427 41 VGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ-CDAFIAVGG 116 (660)
Q Consensus 41 l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~-~D~IIavGG 116 (660)
+...+..++-+++.||++..-...+..+.+.+.|++.|+++.....++ ++..+....+..++..+ +|+||..+-
T Consensus 123 ~~~~~~~~~w~~vaii~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~--~~~~d~~~~L~~lk~~~~~~viv~~~~ 197 (382)
T cd06371 123 LFTVLRYFRWAHVAIVSSPQDIWVETAQKLASALRAHGLPVGLVTSMG--PDEKGAREALKKVRSADRVRVVIMCMH 197 (382)
T ss_pred HHHHHHHCCCeEEEEEEecccchHHHHHHHHHHHHHCCCcEEEEEEec--CCHHHHHHHHHHHhcCCCcEEEEEEee
Confidence 556677888899999998765444466889999999998877554443 35568889999998877 699887553
No 223
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=66.09 E-value=25 Score=35.27 Aligned_cols=89 Identities=12% Similarity=0.041 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCCCEEEEEECccc---cccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC-CCEEEEe
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHL---SKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ-CDAFIAV 114 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~---~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~-~D~IIav 114 (660)
..+.++|.+.|.++++++.+..- ......+-+.+.+++.|+++....-...+.+.+...+..+.+.+.. +|+|++.
T Consensus 105 ~~~~~~l~~~g~~~i~~l~~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ai~~~ 184 (268)
T cd06298 105 FEATELLIKNGHKKIAFISGPLEDSINGDERLAGYKEALSEANIEFDESLIFEGDYTYESGYELAEELLEDGKPTAAFVT 184 (268)
T ss_pred HHHHHHHHHcCCceEEEEeCCcccccchhHHHHHHHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHhcCCCCCEEEEc
Confidence 34667777788899999986432 1222334566788877765321100112333344444444444333 8999998
Q ss_pred cCchhhhHHHHHH
Q psy2427 115 GGGSVIDTCKAAN 127 (660)
Q Consensus 115 GGGsviD~AK~~a 127 (660)
+...++.+.+++.
T Consensus 185 ~d~~a~~~~~~l~ 197 (268)
T cd06298 185 DDELAIGILNAAQ 197 (268)
T ss_pred CcHHHHHHHHHHH
Confidence 8888777666654
No 224
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=65.95 E-value=35 Score=36.27 Aligned_cols=50 Identities=16% Similarity=0.208 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC
Q psy2427 91 PTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS 165 (660)
Q Consensus 91 p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~ 165 (660)
.+.+..+++++.++++++|.+|.|||--.++.|..++.. + +|+|.||-|.
T Consensus 76 ~~~~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~---~----------------------i~vigiPkTI 125 (317)
T cd00763 76 KDEEGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTEH---G----------------------FPCVGLPGTI 125 (317)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHc---C----------------------CCEEEecccc
Confidence 367889999999999999999999999999888766432 1 8999999997
No 225
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=65.22 E-value=63 Score=34.80 Aligned_cols=100 Identities=12% Similarity=0.095 Sum_probs=63.8
Q ss_pred CceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCC--CeEEEEeCcccCCCHHHHH
Q psy2427 20 KEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHG--VKFELFDKVRVEPTGDSFL 97 (660)
Q Consensus 20 ~~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~g--i~~~~~~~~~~~p~~~~v~ 97 (660)
..+.|++.|. + ...+.+++..+|.+++.||++..-. ...++.+.+.+++.| +.+... .+.......+..
T Consensus 103 ~~~~fr~~p~---~----~~a~~~~~~~~~wk~vaii~~~~~~-~~~~~~~~~~~~~~g~~i~v~~~-~~~~~~~~~d~~ 173 (382)
T cd06380 103 NQFVLQMRPS---L----IQALVDLIEHYGWRKVVYLYDSDRG-LLRLQQLLDYLREKDNKWQVTAR-RVDNVTDEEEFL 173 (382)
T ss_pred CcEEEEeccc---h----hHHHHHHHHhcCCeEEEEEECCCcc-hHHHHHHHHHHhccCCceEEEEE-EecCCCcHHHHH
Confidence 4566666543 1 1234566777899999999986532 234467778888888 555432 222222346788
Q ss_pred HHHHHhHhcCCCEEEEecCchhhhHHHHHHhHh
Q psy2427 98 EATKFVRSVQCDAFIAVGGGSVIDTCKAANLYY 130 (660)
Q Consensus 98 ~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~ 130 (660)
..+..+++.++|.||-. ++.-|+++++....
T Consensus 174 ~~L~~ik~~~~~~iil~--~~~~~~~~i~~qa~ 204 (382)
T cd06380 174 RLLEDLDRRKEKRIVLD--CESERLNKILEQIV 204 (382)
T ss_pred HHHHHhhcccceEEEEE--CCHHHHHHHHHHHH
Confidence 88999999999999864 44456666664433
No 226
>PRK00861 putative lipid kinase; Reviewed
Probab=64.87 E-value=43 Score=35.06 Aligned_cols=71 Identities=13% Similarity=0.187 Sum_probs=43.7
Q ss_pred CEEEEEECccccc-c--chHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHH
Q psy2427 51 QRVCVMTDPHLSK-L--APVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAA 126 (660)
Q Consensus 51 ~r~liVtd~~~~~-~--~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~ 126 (660)
+|++||..+..-. . ...+++...|++ ++++.++.-- . .....++++.+.+.+.|.||++|| |++-.++..+
T Consensus 3 ~~~~iI~NP~sG~~~~~~~~~~i~~~l~~-~~~~~~~~t~-~---~~~a~~~a~~~~~~~~d~vv~~GGDGTl~evv~~l 77 (300)
T PRK00861 3 RSACLIFNPVAGQGNPEVDLALIRAILEP-EMDLDIYLTT-P---EIGADQLAQEAIERGAELIIASGGDGTLSAVAGAL 77 (300)
T ss_pred ceEEEEECCCCCCCchhhhHHHHHHHHHh-cCceEEEEcc-C---CCCHHHHHHHHHhcCCCEEEEECChHHHHHHHHHH
Confidence 6888888876422 1 134678888876 4666554321 1 123355566666678899999999 5555555443
No 227
>PRK14071 6-phosphofructokinase; Provisional
Probab=64.15 E-value=18 Score=39.07 Aligned_cols=50 Identities=24% Similarity=0.243 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCC
Q psy2427 93 GDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSG 166 (660)
Q Consensus 93 ~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~g 166 (660)
.+..+++++.++++++|.+|.|||--.++.++-++... + +|+|.||=|.-
T Consensus 93 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~~~~--~----------------------i~vIgiPkTID 142 (360)
T PRK14071 93 RDRSQEIIDGYHSLGLDALIGIGGDGSLAILRRLAQQG--G----------------------INLVGIPKTID 142 (360)
T ss_pred hHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHhc--C----------------------CcEEEeccccc
Confidence 45778999999999999999999998888877665321 2 89999999973
No 228
>PRK14072 6-phosphofructokinase; Provisional
Probab=64.03 E-value=20 Score=39.64 Aligned_cols=54 Identities=17% Similarity=0.133 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhc-CCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC
Q psy2427 92 TGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYC-DPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS 165 (660)
Q Consensus 92 ~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~-~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~ 165 (660)
+.+..+++++.+++.++|.+|.|||-=.++.|..++.... .+ ..+|+|.||=|.
T Consensus 88 ~~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~g--------------------~~i~vIgIPkTI 142 (416)
T PRK14072 88 DRAEYERLLEVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMG--------------------YPIRCIGIPKTI 142 (416)
T ss_pred ChHHHHHHHHHHHHcCCCEEEEECChHHHHHHHHHHHHHHHhC--------------------CCceEEEeeecc
Confidence 5788999999999999999999999999999987765432 11 018999999986
No 229
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=63.94 E-value=47 Score=36.01 Aligned_cols=84 Identities=8% Similarity=-0.017 Sum_probs=56.3
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
..+.+++.+.+.+|+.+|+....+.....+.+.+.+++.|+++.-...+ .....+....+..++..++|+|+..+-|.
T Consensus 122 ~~~~~~~~~~~g~~va~l~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~--~~g~~Df~~~l~~i~~~~pD~V~~~~~g~ 199 (374)
T TIGR03669 122 GTVVPYMVEEYGKKIYTIAADYNFGQLSADWVRVIAKENGAEVVGEEFI--PLSVSQFSSTIQNIQKADPDFVMSMLVGA 199 (374)
T ss_pred HHHHHHHHHcCCCeEEEEcCCcHHHHHHHHHHHHHHHHcCCeEEeEEec--CCCcchHHHHHHHHHHcCCCEEEEcCcCC
Confidence 3355666654348999998876655545567788888999886532222 23456777788888899999999766443
Q ss_pred hhhHHHHH
Q psy2427 119 VIDTCKAA 126 (660)
Q Consensus 119 viD~AK~~ 126 (660)
|.+.++
T Consensus 200 --~~~~~~ 205 (374)
T TIGR03669 200 --NHASFY 205 (374)
T ss_pred --cHHHHH
Confidence 344443
No 230
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=63.81 E-value=39 Score=35.63 Aligned_cols=87 Identities=8% Similarity=-0.027 Sum_probs=55.0
Q ss_pred HHHHHHHHhcC-CCEEEEEECccc-cccchHHHHHHHHHh-CCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEec
Q psy2427 39 REVGMDMVNMK-AQRVCVMTDPHL-SKLAPVKATLDSLTR-HGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVG 115 (660)
Q Consensus 39 ~~l~~~l~~~g-~~r~liVtd~~~-~~~~~~~~i~~~L~~-~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavG 115 (660)
..+.+++.+.+ .+|+.+|.+..- +.....+.+.+.+++ .|.++.....+. ++..+....+..++..++|+|+..+
T Consensus 122 ~~~~~~~~~~~~~~~v~~i~~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~--~~~~~~~~~v~~i~~~~~d~v~~~~ 199 (332)
T cd06344 122 RALAKYLKKKNKIKKVAIFYNSTSPYSQSLKQEFTSALLERGGGIVVTPCDLS--SPDFNANTAVSQAINNGATVLVLFP 199 (332)
T ss_pred HHHHHHHHhhcCCCeEEEEeCCCchHhHHHHHHHHHHHHHhcCCeeeeeccCC--CCCCCHHHHHHHHHhcCCCEEEEeC
Confidence 44677777665 789988886543 444455778888888 477755322222 2222344556666777899999887
Q ss_pred CchhhhHHHHHHhH
Q psy2427 116 GGSVIDTCKAANLY 129 (660)
Q Consensus 116 GGsviD~AK~~a~~ 129 (660)
.|. ++.+++...
T Consensus 200 ~~~--~~~~~~~~~ 211 (332)
T cd06344 200 DTD--TLDKALEVA 211 (332)
T ss_pred Chh--HHHHHHHHH
Confidence 665 556655443
No 231
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=63.70 E-value=28 Score=37.25 Aligned_cols=73 Identities=12% Similarity=0.150 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCC------HHHHHHHHHHhHhcCCCEE
Q psy2427 38 TREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPT------GDSFLEATKFVRSVQCDAF 111 (660)
Q Consensus 38 ~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~------~~~v~~~~~~~~~~~~D~I 111 (660)
...+-.+|.+.| ..++|.+-.. +.+.+.|+..|+++.++..-..... .+...++.+.++++++|.+
T Consensus 16 Fk~~I~eL~~~G-heV~it~R~~-------~~~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~~l~~~~~~~~pDv~ 87 (335)
T PF04007_consen 16 FKNIIRELEKRG-HEVLITARDK-------DETEELLDLYGIDYIVIGKHGDSLYGKLLESIERQYKLLKLIKKFKPDVA 87 (335)
T ss_pred HHHHHHHHHhCC-CEEEEEEecc-------chHHHHHHHcCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCEE
Confidence 455566677777 5777766433 4566677777999998866442221 3344556667778899999
Q ss_pred EEecCch
Q psy2427 112 IAVGGGS 118 (660)
Q Consensus 112 IavGGGs 118 (660)
|+.|+-.
T Consensus 88 is~~s~~ 94 (335)
T PF04007_consen 88 ISFGSPE 94 (335)
T ss_pred EecCcHH
Confidence 9766533
No 232
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=63.55 E-value=22 Score=36.55 Aligned_cols=57 Identities=19% Similarity=0.316 Sum_probs=35.2
Q ss_pred EEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHH
Q psy2427 53 VCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKA 125 (660)
Q Consensus 53 ~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~ 125 (660)
+.|+..+... ...+++.+.|.+.|+.+.+..... -...++|+||++|| |+.+-+++.
T Consensus 3 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~--------------~~~~~~d~vi~iGGDGT~L~a~~~ 60 (256)
T PRK14075 3 LGIFYREEKE--KEAKFLKEKISKEHEVVEFCEASA--------------SGKVTADLIIVVGGDGTVLKAAKK 60 (256)
T ss_pred EEEEeCccHH--HHHHHHHHHHHHcCCeeEeecccc--------------cccCCCCEEEEECCcHHHHHHHHH
Confidence 4445444432 245888999988888766432211 12347899999999 565555554
No 233
>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases. Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.
Probab=62.88 E-value=43 Score=36.61 Aligned_cols=85 Identities=5% Similarity=0.004 Sum_probs=55.7
Q ss_pred HHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCC-----CHHHHHHHHHHhHhcCCCEEEEec
Q psy2427 41 VGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEP-----TGDSFLEATKFVRSVQCDAFIAVG 115 (660)
Q Consensus 41 l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p-----~~~~v~~~~~~~~~~~~D~IIavG 115 (660)
+...++.+|.+|+.||++..-+.....+.+.+.+++.|+++.....+.... ...+..+.+..++. ..+.+|.+|
T Consensus 127 ~~~~~~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~iv~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~v~~~ 205 (404)
T cd06370 127 VIALLKHFNWNKFSVVYENDSKYSSVFETLKEEAELRNITISHVEYYADFYPPDPIMDNPFEDIIQRTKE-TTRIYVFIG 205 (404)
T ss_pred HHHHHHHCCCcEEEEEEecCcccHHHHHHHHHHHHHcCCEEEEEEEECCCCCchhhhHHHHHHHHHhccC-CCEEEEEEc
Confidence 455667788899999998765555566888889999999876444443321 23566666666655 356777776
Q ss_pred CchhhhHHHHHHh
Q psy2427 116 GGSVIDTCKAANL 128 (660)
Q Consensus 116 GGsviD~AK~~a~ 128 (660)
+. -|+..++..
T Consensus 206 ~~--~~~~~~l~q 216 (404)
T cd06370 206 EA--NELRQFLMS 216 (404)
T ss_pred CH--HHHHHHHHH
Confidence 43 555555543
No 234
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=62.38 E-value=15 Score=32.14 Aligned_cols=55 Identities=16% Similarity=0.260 Sum_probs=37.4
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA 113 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa 113 (660)
+|++++|+.+...+-..+++.+.+++.|+++.+. ..+..+ +.+.....++|+|+.
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~~~i~-----a~~~~e---~~~~~~~~~~DvIll 56 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKDIEVD-----AITATE---GEKAIAAAEYDLYLV 56 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCceEEE-----EecHHH---HHHhhccCCCCEEEE
Confidence 6899999998765556799999999999987653 223333 223333456786663
No 235
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=62.33 E-value=43 Score=35.79 Aligned_cols=88 Identities=14% Similarity=0.020 Sum_probs=54.9
Q ss_pred HHHHHHHHhcC-CCEEEEEECccccccch---HHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEe
Q psy2427 39 REVGMDMVNMK-AQRVCVMTDPHLSKLAP---VKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAV 114 (660)
Q Consensus 39 ~~l~~~l~~~g-~~r~liVtd~~~~~~~~---~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIav 114 (660)
..+...++..+ .+|+.+++....+.... ..+..+.|++.|+++..-..+ .+...+....+..+++.++|+|+..
T Consensus 133 ~~~~~~~~~~~~~k~v~ii~~~~~~g~~~~~~~~~~~~~~~~~G~~vv~~~~~--~~~~~D~~~~v~~ik~a~pD~v~~~ 210 (357)
T cd06337 133 ATYVGMWKQLETNKKVGILYPNDPDGNAFADPVIGLPAALADAGYKLVDPGRF--EPGTDDFSSQINAFKREGVDIVTGF 210 (357)
T ss_pred HHHHHHHHhCCCCceEEEEeecCchhHHHHHhhhcccHHHHhCCcEEeccccc--CCCCCcHHHHHHHHHhcCCCEEEeC
Confidence 33444455666 79999998765443322 233456777789886532222 3344567777888889999999866
Q ss_pred cCchhhhHHHHHHhHh
Q psy2427 115 GGGSVIDTCKAANLYY 130 (660)
Q Consensus 115 GGGsviD~AK~~a~~~ 130 (660)
+-+. |.+.++....
T Consensus 211 ~~~~--~~~~~~~~~~ 224 (357)
T cd06337 211 AIPP--DFATFWRQAA 224 (357)
T ss_pred CCcc--HHHHHHHHHH
Confidence 5444 6666654433
No 236
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=62.26 E-value=21 Score=40.08 Aligned_cols=77 Identities=21% Similarity=0.259 Sum_probs=43.6
Q ss_pred CCEEEEEECccccc-cchHHHHHHHHH-hCCCeEEEEeCcccCC-----CHHHHH--HHHHHh--HhcCCCEEEEecC-c
Q psy2427 50 AQRVCVMTDPHLSK-LAPVKATLDSLT-RHGVKFELFDKVRVEP-----TGDSFL--EATKFV--RSVQCDAFIAVGG-G 117 (660)
Q Consensus 50 ~~r~liVtd~~~~~-~~~~~~i~~~L~-~~gi~~~~~~~~~~~p-----~~~~v~--~~~~~~--~~~~~D~IIavGG-G 117 (660)
.++++||+.+.-.. .....++.+.|+ ..|+.+.+.......- ...... .-.... ...++|+||.||| |
T Consensus 194 p~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIsiGGDG 273 (508)
T PLN02935 194 PQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVITLGGDG 273 (508)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEEECCcH
Confidence 47899998765322 235578888888 5788877643211100 000000 000010 1136899999999 8
Q ss_pred hhhhHHHHH
Q psy2427 118 SVIDTCKAA 126 (660)
Q Consensus 118 sviD~AK~~ 126 (660)
+.+-+++..
T Consensus 274 TlL~Aar~~ 282 (508)
T PLN02935 274 TVLWAASMF 282 (508)
T ss_pred HHHHHHHHh
Confidence 888777654
No 237
>PLN02727 NAD kinase
Probab=62.02 E-value=24 Score=42.39 Aligned_cols=78 Identities=13% Similarity=0.112 Sum_probs=45.7
Q ss_pred CCCEEEEEECccccccchHHHHHHHHHhC-CCeEEEEeCcccC----CCHHHHHH----HHHHhHhcCCCEEEEecC-ch
Q psy2427 49 KAQRVCVMTDPHLSKLAPVKATLDSLTRH-GVKFELFDKVRVE----PTGDSFLE----ATKFVRSVQCDAFIAVGG-GS 118 (660)
Q Consensus 49 g~~r~liVtd~~~~~~~~~~~i~~~L~~~-gi~~~~~~~~~~~----p~~~~v~~----~~~~~~~~~~D~IIavGG-Gs 118 (660)
..++++||+-..-.......++.+.|.+. |+++.+-...... +....... -.... ..++|+||.||| |+
T Consensus 677 p~rtVgIV~K~~~ea~~~~~eL~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el-~~~~DLVIvLGGDGT 755 (986)
T PLN02727 677 TPKTVLLLKKLGQELMEEAKEVASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDL-HERVDFVACLGGDGV 755 (986)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhc-ccCCCEEEEECCcHH
Confidence 35899999876543233457788888886 8887653221110 00000000 00011 136899999999 89
Q ss_pred hhhHHHHHH
Q psy2427 119 VIDTCKAAN 127 (660)
Q Consensus 119 viD~AK~~a 127 (660)
++-+++...
T Consensus 756 lLrAar~~~ 764 (986)
T PLN02727 756 ILHASNLFR 764 (986)
T ss_pred HHHHHHHhc
Confidence 998888753
No 238
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=61.21 E-value=1.1e+02 Score=32.04 Aligned_cols=61 Identities=15% Similarity=0.142 Sum_probs=41.7
Q ss_pred HHHHHHHHHhCCCeEEEEeCcccCCC-----HHHHHHHHHHhHh-cCCC-EEEEecCchhhhHHHHHHhH
Q psy2427 67 VKATLDSLTRHGVKFELFDKVRVEPT-----GDSFLEATKFVRS-VQCD-AFIAVGGGSVIDTCKAANLY 129 (660)
Q Consensus 67 ~~~i~~~L~~~gi~~~~~~~~~~~p~-----~~~v~~~~~~~~~-~~~D-~IIavGGGsviD~AK~~a~~ 129 (660)
.+.+.+.+++.|-...++.....+|- .+.+.|+.++++. .++| .|++.|+|+. .|.++.-.
T Consensus 134 ~~~~~e~~~~~g~kpyvIp~GG~~~~g~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT--~AGl~~g~ 201 (323)
T COG2515 134 AEELAEEVRKQGGKPYVIPEGGSSPLGALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGT--HAGLLVGL 201 (323)
T ss_pred hHHHHHHHHhcCCCCcEeccCCcCccccccHHHHHHHHHHHHhhccCCCEEEEeCCCcch--HHHHHHHh
Confidence 46677778887877666665555552 6778888888886 7888 5667777766 56655433
No 239
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=61.07 E-value=20 Score=36.88 Aligned_cols=51 Identities=12% Similarity=0.140 Sum_probs=33.0
Q ss_pred EEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHH
Q psy2427 52 RVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAA 126 (660)
Q Consensus 52 r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~ 126 (660)
|.-+++.+.-......+++.+.++..++ .+.++|+||++|| |+.+-+++..
T Consensus 2 ~~~i~~~~~~~s~~~~~~l~~~~~~~~~------------------------~~~~~D~vi~iGGDGT~L~a~~~~ 53 (259)
T PRK00561 2 KYKIFASTTPQTEPVLPKLKKVLKKKLA------------------------VEDGADYLFVLGGDGFFVSTAANY 53 (259)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHhhCCC------------------------ccCCCCEEEEECCcHHHHHHHHHh
Confidence 4667777664433345666666654331 1356899999999 7888766654
No 240
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=61.00 E-value=21 Score=30.63 Aligned_cols=52 Identities=12% Similarity=0.082 Sum_probs=36.8
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEE
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFI 112 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~II 112 (660)
++++++|+.+...+-...++.+.+++.|+++.+. ..+...+.+.. .++|+|+
T Consensus 4 ~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~-----a~~~~~~~~~~-----~~~Dvil 55 (95)
T TIGR00853 4 TNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIA-----AGSYGAAGEKL-----DDADVVL 55 (95)
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEE-----EecHHHHHhhc-----CCCCEEE
Confidence 6899999998765556799999999999987754 23444444322 2568665
No 241
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=60.57 E-value=41 Score=33.92 Aligned_cols=89 Identities=13% Similarity=0.028 Sum_probs=53.8
Q ss_pred HHHHHHHHhcCCCEEEEEECcccccc--chHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKL--APVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG 116 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~--~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG 116 (660)
..+.+.|.+.|.+++++|.++.-... ...+-+.+.+++.++.+....-...+-+.+...++.+.+...++|+|++.+.
T Consensus 111 ~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~ai~~~~d 190 (273)
T cd06292 111 RLAVRHLVALGHRRIGFASGPGRTVPRRRKIAGFRAALEEAGLEPPEALVARGMFSVEGGQAAAVELLGSGPTAIVAASD 190 (273)
T ss_pred HHHHHHHHHCCCceEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhheEeCCCCHHHHHHHHHHHhcCCCCEEEEcCc
Confidence 34667777789899999987532111 1234566778777754211000112334455555555554445999999988
Q ss_pred chhhhHHHHHH
Q psy2427 117 GSVIDTCKAAN 127 (660)
Q Consensus 117 GsviD~AK~~a 127 (660)
..++-+.+++.
T Consensus 191 ~~a~g~~~~l~ 201 (273)
T cd06292 191 LMALGAIRAAR 201 (273)
T ss_pred HHHHHHHHHHH
Confidence 88877777664
No 242
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=60.30 E-value=61 Score=28.11 Aligned_cols=33 Identities=18% Similarity=0.055 Sum_probs=26.4
Q ss_pred EEEEEECccccccchHHHHHHHHHhCCCeEEEE
Q psy2427 52 RVCVMTDPHLSKLAPVKATLDSLTRHGVKFELF 84 (660)
Q Consensus 52 r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~ 84 (660)
|++++|+.+....-..+++++.+++.|+++.+.
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~~~i~ 34 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVPLEAA 34 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 588999877544446799999999999998754
No 243
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=60.02 E-value=61 Score=34.88 Aligned_cols=75 Identities=8% Similarity=0.073 Sum_probs=46.9
Q ss_pred HHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeC--cccCCC----------HHHHHHHHHHhHhcCC
Q psy2427 41 VGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDK--VRVEPT----------GDSFLEATKFVRSVQC 108 (660)
Q Consensus 41 l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~--~~~~p~----------~~~v~~~~~~~~~~~~ 108 (660)
+.++|++.| .++++|+...-.+. + .+.+.|+++..+.. .....+ ...+.++...+++.++
T Consensus 21 ~a~~l~~~g-~~v~~vg~~~~~e~----~---l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP 92 (352)
T PRK12446 21 IIPYLKEDN-WDISYIGSHQGIEK----T---IIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMKGVMDAYVRIRKLKP 92 (352)
T ss_pred HHHHHHhCC-CEEEEEECCCcccc----c---cCcccCCcEEEEeccCcCCCchHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 456677666 68888886553222 1 24445777665542 111112 3456677788999999
Q ss_pred CEEEEecCchhhhHH
Q psy2427 109 DAFIAVGGGSVIDTC 123 (660)
Q Consensus 109 D~IIavGGGsviD~A 123 (660)
|+||+.||-...=.+
T Consensus 93 dvvi~~Ggy~s~p~~ 107 (352)
T PRK12446 93 DVIFSKGGFVSVPVV 107 (352)
T ss_pred CEEEecCchhhHHHH
Confidence 999999998754333
No 244
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=59.87 E-value=22 Score=37.31 Aligned_cols=80 Identities=13% Similarity=0.128 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHH-hCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC
Q psy2427 38 TREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLT-RHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG 116 (660)
Q Consensus 38 ~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~-~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG 116 (660)
+.+..+.+..++.+++.+|+...+++..-.+.+.+.++ +.|+++.+.++-+ +..+... .+.... ...-..++-+||
T Consensus 58 l~~f~~~~~~~~v~~i~~vaTsa~R~A~N~~~~~~~i~~~tgi~i~visg~e-Ea~l~~~-gv~~~~-~~~~~~v~DiGG 134 (300)
T TIGR03706 58 LKRFAELLRGFPVDEVRAVATAALRDAKNGPEFLREAEAILGLPIEVISGEE-EARLIYL-GVAHTL-PIADGLVVDIGG 134 (300)
T ss_pred HHHHHHHHHhCCCCeEEEEEcHHHHcCCCHHHHHHHHHHHHCCCeEEeChHH-HHHHHHH-HHHhCC-CCCCcEEEEecC
Confidence 44455556678888999999888777544466776665 3599988876522 2222111 111111 112249999999
Q ss_pred chhh
Q psy2427 117 GSVI 120 (660)
Q Consensus 117 Gsvi 120 (660)
||+=
T Consensus 135 GSte 138 (300)
T TIGR03706 135 GSTE 138 (300)
T ss_pred CeEE
Confidence 9974
No 245
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor. Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=59.62 E-value=42 Score=37.42 Aligned_cols=86 Identities=15% Similarity=0.017 Sum_probs=57.7
Q ss_pred HHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCC-CeEEEEeCcccCCCHHHHHHHHHHhHh-cCCCEEEEecCch
Q psy2427 41 VGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHG-VKFELFDKVRVEPTGDSFLEATKFVRS-VQCDAFIAVGGGS 118 (660)
Q Consensus 41 l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~g-i~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~D~IIavGGGs 118 (660)
+.+.++.+|.+++.+|.+..-+.....+.+.+.+++.| +.+.....+...+...+....+..+++ .++|+||..+ .
T Consensus 163 i~~~i~~~~w~~Vaii~~~~~yg~~~~~~~~~~~~~~g~~~v~~~~~i~~~~~~~d~~~~l~~ik~~~~~~vIvl~~--~ 240 (463)
T cd06376 163 MVDIVKALGWNYVSTLASEGNYGESGVEAFTQISREAGGVCIAQSIKIPREPRPGEFDKIIKRLLETPNARAVIIFA--N 240 (463)
T ss_pred HHHHHHHcCCeEEEEEEeCChHHHHHHHHHHHHHHHcCCceEEEEEecCCCCCHHHHHHHHHHHhccCCCeEEEEec--C
Confidence 55667778989999998554444345577888888765 444322234446667788888888876 6899998776 4
Q ss_pred hhhHHHHHHh
Q psy2427 119 VIDTCKAANL 128 (660)
Q Consensus 119 viD~AK~~a~ 128 (660)
.-|++.++..
T Consensus 241 ~~~~~~ll~~ 250 (463)
T cd06376 241 EDDIRRVLEA 250 (463)
T ss_pred hHHHHHHHHH
Confidence 4566666543
No 246
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=58.92 E-value=60 Score=32.83 Aligned_cols=84 Identities=13% Similarity=0.178 Sum_probs=56.1
Q ss_pred EECcChHHHHHHHHHhc--CCCEEEEEECcccc--ccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 32 RIGPGVTREVGMDMVNM--KAQRVCVMTDPHLS--KLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 32 ~~G~g~~~~l~~~l~~~--g~~r~liVtd~~~~--~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
+.|.+-++...+.+.++ +.+|+++|-..+.. ...+.++..+.+++.|+++..+... + +..+.+. +
T Consensus 11 ~~~~~~l~~~~~~~~~~~~~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~------~---d~~~~l~--~ 79 (233)
T PRK05282 11 LPGTGYLEHALPLIAELLAGRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRV------A---DPVAAIE--N 79 (233)
T ss_pred CCCCchHHHHHHHHHHHHcCCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccc------h---hhHHHHh--c
Confidence 45677777777777765 44788888766532 2346788999999999987765432 1 1233343 5
Q ss_pred CCEEEEecCchhhhHHHHHH
Q psy2427 108 CDAFIAVGGGSVIDTCKAAN 127 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~a 127 (660)
+| +|=||||...-+.+...
T Consensus 80 ad-~I~v~GGnt~~l~~~l~ 98 (233)
T PRK05282 80 AE-AIFVGGGNTFQLLKQLY 98 (233)
T ss_pred CC-EEEECCccHHHHHHHHH
Confidence 67 77789998777766553
No 247
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=58.91 E-value=80 Score=31.10 Aligned_cols=49 Identities=14% Similarity=0.143 Sum_probs=36.2
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
..+-+.+.+++.|+++.+++. +.+.+...+.++.+...++|.||..+.-
T Consensus 17 ~~~g~~~~~~~~g~~l~~~~~---~~~~~~~~~~~~~~~~~~~d~ii~~~~~ 65 (264)
T cd01537 17 VLKGIEEAAKAAGYQVLLANS---QNDAEKQLSALENLIARGVDGIIIAPSD 65 (264)
T ss_pred HHHHHHHHHHHcCCeEEEEeC---CCCHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 557777888888998876654 3345677777777777799999987643
No 248
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=58.75 E-value=21 Score=40.78 Aligned_cols=56 Identities=18% Similarity=0.331 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC
Q psy2427 91 PTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS 165 (660)
Q Consensus 91 p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~ 165 (660)
.+.+..+++++.+++.+.|.+|-|||--.++.|..++....+. ...+++|.||-|.
T Consensus 145 ~~~e~~~~~~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~-------------------g~~i~VIGIPkTI 200 (539)
T TIGR02477 145 ETEEQFAKALTTAKKLKLDGLVIIGGDDSNTNAALLAEYFAKH-------------------GLKTQVIGVPKTI 200 (539)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhc-------------------CCCceEEEEeeee
Confidence 3578899999999999999999999999999998777654311 0118999999996
No 249
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=58.67 E-value=39 Score=33.80 Aligned_cols=73 Identities=10% Similarity=0.130 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeC-------------c----ccCCCHHHHHHHH
Q psy2427 38 TREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDK-------------V----RVEPTGDSFLEAT 100 (660)
Q Consensus 38 ~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~-------------~----~~~p~~~~v~~~~ 100 (660)
.+.-+..++..|.+|+.++..+...+.++ .++.|++.|+++.+-++ + -.+.+.+...+++
T Consensus 105 idaTa~~ik~~g~kkvgLLgT~~Tm~~~f---Y~~~l~~~gievvvPdd~~q~~v~~iIy~El~~G~~~~~sr~~~~~ii 181 (230)
T COG1794 105 IDATAKAIKAAGAKKVGLLGTRFTMEQGF---YRKRLEEKGIEVVVPDDDEQAEVNRIIYEELCQGIVKDASRELYLAVI 181 (230)
T ss_pred HHHHHHHHHhcCCceeEEeeccchHHhHH---HHHHHHHCCceEecCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 45566777888999999999988777654 56678888988764221 1 1123455566666
Q ss_pred HHhHhcCCCEEEE
Q psy2427 101 KFVRSVQCDAFIA 113 (660)
Q Consensus 101 ~~~~~~~~D~IIa 113 (660)
+.+.+.++|+||.
T Consensus 182 ~~l~~~Gae~vIl 194 (230)
T COG1794 182 ERLAERGAEGVIL 194 (230)
T ss_pred HHHHHcCCCEEEE
Confidence 7777777777764
No 250
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=58.50 E-value=40 Score=35.22 Aligned_cols=81 Identities=11% Similarity=0.071 Sum_probs=54.6
Q ss_pred HHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhh
Q psy2427 41 VGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVI 120 (660)
Q Consensus 41 l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsvi 120 (660)
+.+.++.+|.+|+.++++...... .+..+.+.+++.|.++... ... +..++....+..++..++|+||..+-+ -
T Consensus 118 ~~~~~~~~~w~~vaii~~~~~~~~-~l~~~~~~~~~~g~~v~~~-~~~--~~~~d~~~~l~~i~~~~~d~Vi~~~~~--~ 191 (324)
T cd06368 118 LLDLIKYFGWRKFVYIYDSDEGLL-RLQELLDALSPKGIQVTVR-RLD--DDTDMYRPLLKEIKREKERRIILDCSP--E 191 (324)
T ss_pred HHHHHHhcCCCEEEEEECCcHhHH-HHHHHHHhhccCCceEEEE-Eec--CCchHHHHHHHHHhhccCceEEEECCH--H
Confidence 556777788899999998654333 2366666777777776532 222 222378888889999999999987644 4
Q ss_pred hHHHHHH
Q psy2427 121 DTCKAAN 127 (660)
Q Consensus 121 D~AK~~a 127 (660)
|+..++-
T Consensus 192 ~~~~i~~ 198 (324)
T cd06368 192 RLKEFLE 198 (324)
T ss_pred HHHHHHH
Confidence 5555543
No 251
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=58.18 E-value=59 Score=28.50 Aligned_cols=80 Identities=10% Similarity=0.089 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 38 TREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 38 ~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
+..+...+++.|. .+.++ |.... .+++.+.+.+...++..++. .-.++.....++++..++..++.+|.+||.
T Consensus 17 l~~la~~l~~~G~-~v~~~-d~~~~----~~~l~~~~~~~~pd~V~iS~-~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~ 89 (121)
T PF02310_consen 17 LLYLAAYLRKAGH-EVDIL-DANVP----PEELVEALRAERPDVVGISV-SMTPNLPEAKRLARAIKERNPNIPIVVGGP 89 (121)
T ss_dssp HHHHHHHHHHTTB-EEEEE-ESSB-----HHHHHHHHHHTTCSEEEEEE-SSSTHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred HHHHHHHHHHCCC-eEEEE-CCCCC----HHHHHHHHhcCCCcEEEEEc-cCcCcHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 4557778888884 55554 43332 16777778777777766543 246778888999999999999999999998
Q ss_pred hhhhHHH
Q psy2427 118 SVIDTCK 124 (660)
Q Consensus 118 sviD~AK 124 (660)
-+.=...
T Consensus 90 ~~t~~~~ 96 (121)
T PF02310_consen 90 HATADPE 96 (121)
T ss_dssp SSGHHHH
T ss_pred chhcChH
Confidence 7443333
No 252
>PLN02204 diacylglycerol kinase
Probab=58.15 E-value=55 Score=37.68 Aligned_cols=76 Identities=18% Similarity=0.170 Sum_probs=45.4
Q ss_pred CCEEEEEECccccc-c--chHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHH
Q psy2427 50 AQRVCVMTDPHLSK-L--APVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKA 125 (660)
Q Consensus 50 ~~r~liVtd~~~~~-~--~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~ 125 (660)
.+|++|+..+..-+ . ..++++...|+++++++.++.--.+ -...++.+-+......+.|.||+||| |++--+.-.
T Consensus 159 ~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i~~~v~~T~~a-ghA~d~~~~~~~~~l~~~D~VVaVGGDGt~nEVlNG 237 (601)
T PLN02204 159 PKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKVIVTERA-GHAFDVMASISNKELKSYDGVIAVGGDGFFNEILNG 237 (601)
T ss_pred CceEEEEECCCCCCcchHHHHHHHHHHHHHcCCeEEEEEecCc-chHHHHHHHHhhhhccCCCEEEEEcCccHHHHHHHH
Confidence 36888888775322 1 2346899999999998775432111 11112211111222356899999999 777777655
Q ss_pred H
Q psy2427 126 A 126 (660)
Q Consensus 126 ~ 126 (660)
+
T Consensus 238 L 238 (601)
T PLN02204 238 Y 238 (601)
T ss_pred H
Confidence 5
No 253
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=58.08 E-value=54 Score=32.75 Aligned_cols=90 Identities=12% Similarity=0.063 Sum_probs=52.3
Q ss_pred HHHHHHHHHhcCCCEEEEEECccc--cccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhH-h-cCCCEEEE
Q psy2427 38 TREVGMDMVNMKAQRVCVMTDPHL--SKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVR-S-VQCDAFIA 113 (660)
Q Consensus 38 ~~~l~~~l~~~g~~r~liVtd~~~--~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~-~-~~~D~IIa 113 (660)
...+.+++.+.|.+++.++++... ......+-+.+.+++.+++.........+.+.+...+.++.+. . ..+|+|++
T Consensus 103 g~~~~~~l~~~g~~~i~~l~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~ 182 (267)
T cd06284 103 ARLAVDHLISLGHRRIALITGPRDNPLARDRLEGYRQALAEAGLPADEELIQEGDFSLESGYAAARRLLALPDRPTAIFC 182 (267)
T ss_pred HHHHHHHHHHcCCceEEEEcCCccchhHHHHHHHHHHHHHHcCCCCCcceEEeCCCChHHHHHHHHHHHhCCCCCcEEEE
Confidence 355777788888899999977432 1112234566778877754321111112334444444444433 2 25799999
Q ss_pred ecCchhhhHHHHHH
Q psy2427 114 VGGGSVIDTCKAAN 127 (660)
Q Consensus 114 vGGGsviD~AK~~a 127 (660)
........+.+++.
T Consensus 183 ~~~~~a~g~~~al~ 196 (267)
T cd06284 183 FSDEMAIGAISALK 196 (267)
T ss_pred cCcHHHHHHHHHHH
Confidence 98888777666653
No 254
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=57.86 E-value=29 Score=40.09 Aligned_cols=96 Identities=14% Similarity=0.199 Sum_probs=52.8
Q ss_pred eEEECcChH-HHHHHHHHh-c--CCCEEEEEECccccc-cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHH-h
Q psy2427 30 TIRIGPGVT-REVGMDMVN-M--KAQRVCVMTDPHLSK-LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKF-V 103 (660)
Q Consensus 30 ~i~~G~g~~-~~l~~~l~~-~--g~~r~liVtd~~~~~-~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~-~ 103 (660)
.++.+...+ +++-+.+++ + ..+|+.||..+.-.+ .....++.+.|++.|+++.+.......-.. ...+.... .
T Consensus 266 ~liaa~~~l~~~l~~~l~~~w~~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~ 344 (569)
T PRK14076 266 SVICSNEILHKKLVGIFGNKWRIKPTKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESFLYNKLKN-RLNEECNLID 344 (569)
T ss_pred eEEEECHHHHHHHHHhhhhhcccCCcEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEechhhhhhcc-cccccccccc
Confidence 344444333 455555543 2 346889987755322 235678888899999987754321100000 00000000 0
Q ss_pred HhcCCCEEEEecC-chhhhHHHHH
Q psy2427 104 RSVQCDAFIAVGG-GSVIDTCKAA 126 (660)
Q Consensus 104 ~~~~~D~IIavGG-GsviD~AK~~ 126 (660)
...++|+||.+|| |+.+-+++.+
T Consensus 345 ~~~~~dlvi~lGGDGT~L~aa~~~ 368 (569)
T PRK14076 345 DIEEISHIISIGGDGTVLRASKLV 368 (569)
T ss_pred cccCCCEEEEECCcHHHHHHHHHh
Confidence 0126899999999 8888777754
No 255
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=57.74 E-value=61 Score=32.36 Aligned_cols=89 Identities=9% Similarity=0.010 Sum_probs=51.6
Q ss_pred HHHHHHHHhcCCCEEEEEECccc-cc-cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh--cCCCEEEEe
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHL-SK-LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS--VQCDAFIAV 114 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~-~~-~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~IIav 114 (660)
..+.+++.+.|.+|+.++++... .. ....+-+.+.+++.++....+.......+.+...+..+.+.+ .++|+|++.
T Consensus 105 ~~~~~~l~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 184 (268)
T cd01575 105 RAMARHLLARGYRRIGFLGARMDDTRAQQRLEGFRAALRAAGLDPPLVVTTPEPSSFALGRELLAELLARWPDLDAVFCS 184 (268)
T ss_pred HHHHHHHHHCCCCcEEEecCCCCcccHHHHHHHHHHHHHHcCCCCCceeEeccCCCHHHHHHHHHHHHhCCCCCCEEEEC
Confidence 44667788888899999987653 11 112344677888777532211111223444555555555433 257999997
Q ss_pred cCchhhhHHHHHH
Q psy2427 115 GGGSVIDTCKAAN 127 (660)
Q Consensus 115 GGGsviD~AK~~a 127 (660)
....++-+.+++.
T Consensus 185 ~d~~a~~~~~~l~ 197 (268)
T cd01575 185 NDDLALGALFECQ 197 (268)
T ss_pred CcHHHHHHHHHHH
Confidence 7766555555543
No 256
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=57.56 E-value=38 Score=31.06 Aligned_cols=84 Identities=15% Similarity=0.223 Sum_probs=48.5
Q ss_pred HHHHhcCCCEEEEEECccc--cccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhh
Q psy2427 43 MDMVNMKAQRVCVMTDPHL--SKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVI 120 (660)
Q Consensus 43 ~~l~~~g~~r~liVtd~~~--~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsvi 120 (660)
++|.+.|.+|+.+|+.... ......+-+.+.+++.|++......................+++.++|+||+-....+.
T Consensus 2 ~~L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pdaii~~~~~~a~ 81 (160)
T PF13377_consen 2 DYLIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSEDAREAQLLWLRRLRPDAIICSNDRLAL 81 (160)
T ss_dssp HHHHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHHHHHHHHHHHHHTCSSSEEEESSHHHHH
T ss_pred hHHHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcchhHHHHHHHHHhcCCCcEEEEcCHHHHH
Confidence 4677889999999994432 22223455778889999986644333323333333333334454588999995555544
Q ss_pred hHHHHH
Q psy2427 121 DTCKAA 126 (660)
Q Consensus 121 D~AK~~ 126 (660)
-+-+++
T Consensus 82 ~~~~~l 87 (160)
T PF13377_consen 82 GVLRAL 87 (160)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 257
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=57.42 E-value=27 Score=38.50 Aligned_cols=34 Identities=12% Similarity=0.061 Sum_probs=26.9
Q ss_pred CCEEEEEECccccccchHHHHHHHHHhCCCeEEE
Q psy2427 50 AQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFEL 83 (660)
Q Consensus 50 ~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~ 83 (660)
.+|++||++.++.=++..+.+...-+..||.+..
T Consensus 229 ak~PlIvaGGGv~YS~A~~~L~af~E~~~iPv~E 262 (617)
T COG3962 229 AKKPLIVAGGGVLYSGAREALRAFAETHGIPVVE 262 (617)
T ss_pred cCCCEEEecCceeechHHHHHHHHHHhcCCceEe
Confidence 4899999999876666667788878888998764
No 258
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=57.41 E-value=35 Score=32.54 Aligned_cols=73 Identities=18% Similarity=0.255 Sum_probs=50.8
Q ss_pred EEEEEECccccccchHHHHHHHHHhC---CCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhh---hHHHH
Q psy2427 52 RVCVMTDPHLSKLAPVKATLDSLTRH---GVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVI---DTCKA 125 (660)
Q Consensus 52 r~liVtd~~~~~~~~~~~i~~~L~~~---gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsvi---D~AK~ 125 (660)
|+++||...-..... .+....|.+. |+++.+|...+-+.+.+..+++.+.+. ++|+|| ||.+ |.++.
T Consensus 2 r~V~vtld~~~~~al-~~aa~~l~~~~~p~l~l~~~~~~el~~~~~~~~~~~~aia--~ADii~----~smlF~ed~v~~ 74 (164)
T PF11965_consen 2 RFVIVTLDEHYNSAL-YRAAARLNRDHCPGLELSVFAAAELERDPEALEECEAAIA--RADIIF----GSMLFIEDHVRP 74 (164)
T ss_pred EEEEEeCchhhhHHH-HHHHHHHhhccCCCeEEEEEeHHHhhcChHHHHHHHHHHH--hCCEEE----eehhhhHHHHHH
Confidence 677787665544433 5555566555 788888887666677777777777777 579999 5777 88887
Q ss_pred HHhHhc
Q psy2427 126 ANLYYC 131 (660)
Q Consensus 126 ~a~~~~ 131 (660)
+.-.+.
T Consensus 75 l~~~L~ 80 (164)
T PF11965_consen 75 LLPALE 80 (164)
T ss_pred HHHHHH
Confidence 765443
No 259
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=57.38 E-value=25 Score=40.61 Aligned_cols=56 Identities=13% Similarity=0.174 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhc-CCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC
Q psy2427 90 EPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYC-DPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS 165 (660)
Q Consensus 90 ~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~-~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~ 165 (660)
-++.+..+++.+.+++.+.|.+|-|||--.++.|..++.... .+ ..+++|.||-|.
T Consensus 156 l~~~e~~~~i~e~l~~l~Id~LvvIGGddS~~~A~~Lae~~~~~~--------------------~~i~VIGIPKTI 212 (610)
T PLN03028 156 IRTTEQVNAALAACEALKLDGLVIIGGVTSNTDAAQLAETFAEAK--------------------CKTKVVGVPVTL 212 (610)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHcC--------------------CCceEEEeceee
Confidence 346788999999999999999999999999998887776543 11 018999999886
No 260
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=57.18 E-value=43 Score=33.21 Aligned_cols=72 Identities=13% Similarity=0.153 Sum_probs=53.1
Q ss_pred ChHHHHHHHHHh-cCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE
Q psy2427 36 GVTREVGMDMVN-MKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA 113 (660)
Q Consensus 36 g~~~~l~~~l~~-~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa 113 (660)
+.-+.|.+.+.. ...+|++++++.... +.+.+.|++.|+++..+.-.+. +..+.-.++.+.+...++|.|+=
T Consensus 102 ~~s~~L~~~l~~~~~~~~vl~~~g~~~~-----~~l~~~L~~~g~~v~~~~vY~~-~~~~~~~~~~~~l~~~~~~~v~f 174 (231)
T PF02602_consen 102 GSSEGLAELLKEQLRGKRVLILRGEGGR-----PDLPEKLREAGIEVTEVIVYET-PPEELSPELKEALDRGEIDAVVF 174 (231)
T ss_dssp SSHHHHHGGHHHCCTTEEEEEEESSSSC-----HHHHHHHHHTTEEEEEEECEEE-EEHHHHHHHHHHHHHTTTSEEEE
T ss_pred CCHHHHHHHHHhhCCCCeEEEEcCCCcc-----HHHHHHHHHCCCeEEEEEEeec-ccccchHHHHHHHHcCCCCEEEE
Confidence 455667776764 444789999987753 5678889889988776666666 77778888888888878877664
No 261
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=56.95 E-value=30 Score=36.97 Aligned_cols=87 Identities=9% Similarity=0.008 Sum_probs=54.9
Q ss_pred HHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCe--EEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 41 VGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVK--FELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 41 l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~--~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
+.+.+..+|-+++.+|++..-......+.+.+.+++.|++ +.......... .+........+++.++|.||..| +
T Consensus 127 i~~ll~~~~w~~vaii~~~~~~g~~~~~~l~~~l~~~g~~~~i~~~~~~~~~~-~~~~~~~l~~l~~~~~~vivl~~--~ 203 (362)
T cd06367 127 MLEILEEYDWHQFSVVTSRDPGYRDFLDRVETTLEESFVGWEFQLVLTLDLSD-DDGDARLLRQLKKLESRVILLYC--S 203 (362)
T ss_pred HHHHHHHcCCeEEEEEEEcCcccHHHHHHHHHHHHhcccceeeeeeEEeccCC-CcchHHHHHHHHhcCCcEEEEeC--C
Confidence 5566677888999999986644444568888999988877 33221222211 11456666777778889877554 4
Q ss_pred hhhHHHHHHhHh
Q psy2427 119 VIDTCKAANLYY 130 (660)
Q Consensus 119 viD~AK~~a~~~ 130 (660)
.-|+..++....
T Consensus 204 ~~~~~~il~~a~ 215 (362)
T cd06367 204 KEEAERIFEAAA 215 (362)
T ss_pred HHHHHHHHHHHH
Confidence 556666654433
No 262
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=56.95 E-value=53 Score=31.73 Aligned_cols=79 Identities=11% Similarity=0.033 Sum_probs=51.2
Q ss_pred EECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhC--CCeEEEEeCcccCCCHHHHHHHHHHhHhcCCC
Q psy2427 32 RIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRH--GVKFELFDKVRVEPTGDSFLEATKFVRSVQCD 109 (660)
Q Consensus 32 ~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~--gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D 109 (660)
+-|.+....+-+...+.+ .|++++.+..- ..+++.+.|++. ++.+.-+++ .-+.++-+++++.+++.++|
T Consensus 31 v~G~dl~~~l~~~~~~~~-~~vfllG~~~~----v~~~~~~~l~~~yP~l~i~g~~g---~f~~~~~~~i~~~I~~s~~d 102 (177)
T TIGR00696 31 VAGPDLMEELCQRAGKEK-LPIFLYGGKPD----VLQQLKVKLIKEYPKLKIVGAFG---PLEPEERKAALAKIARSGAG 102 (177)
T ss_pred cChHHHHHHHHHHHHHcC-CeEEEECCCHH----HHHHHHHHHHHHCCCCEEEEECC---CCChHHHHHHHHHHHHcCCC
Confidence 347787777777776666 78888876542 235566666554 555544422 22345567789999999999
Q ss_pred -EEEEecCch
Q psy2427 110 -AFIAVGGGS 118 (660)
Q Consensus 110 -~IIavGGGs 118 (660)
++||+|--.
T Consensus 103 il~VglG~Pk 112 (177)
T TIGR00696 103 IVFVGLGCPK 112 (177)
T ss_pred EEEEEcCCcH
Confidence 556666443
No 263
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=56.63 E-value=53 Score=32.88 Aligned_cols=89 Identities=12% Similarity=0.068 Sum_probs=52.8
Q ss_pred HHHHHHHHhcCCCEEEEEECccccc--cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhH-h-cCCCEEEEe
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVR-S-VQCDAFIAV 114 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~-~-~~~D~IIav 114 (660)
..+.+++.+.|.+++.++++..-.. ....+-+.+.+++.++++........+.+.+...+.++.+. . .++|+|++.
T Consensus 105 ~~a~~~l~~~g~~~i~~l~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 184 (269)
T cd06288 105 YDATRHLLAAGHRRIAFINGEPWMLAAKDRLKGYRQALAEAGIPFDPDLVVHGDWSADDGYEAAAALLDLDDRPTAIFCG 184 (269)
T ss_pred HHHHHHHHHcCCceEEEEeCCccchhHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChHHHHHHHHHHHhCCCCCCEEEEe
Confidence 4567777777989999998764211 11234567778877764321111112233333333333333 2 257999999
Q ss_pred cCchhhhHHHHHH
Q psy2427 115 GGGSVIDTCKAAN 127 (660)
Q Consensus 115 GGGsviD~AK~~a 127 (660)
....++.+.+++.
T Consensus 185 ~d~~a~~~~~~l~ 197 (269)
T cd06288 185 NDRMAMGAYQALL 197 (269)
T ss_pred CcHHHHHHHHHHH
Confidence 9888888877665
No 264
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=56.51 E-value=28 Score=32.19 Aligned_cols=60 Identities=17% Similarity=0.134 Sum_probs=40.7
Q ss_pred HHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhh--hHHHHHHhHh
Q psy2427 68 KATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVI--DTCKAANLYY 130 (660)
Q Consensus 68 ~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsvi--D~AK~~a~~~ 130 (660)
.-+.+.|++.|+++..+.-+..+ .+.+.+.++.+.+ ++|.||..||-++. |..+-+...+
T Consensus 30 ~~l~~~l~~~G~~v~~~~~v~Dd--~~~i~~~l~~~~~-~~DliIttGG~g~g~~D~t~~ai~~~ 91 (144)
T TIGR00177 30 PLLAALLEEAGFNVSRLGIVPDD--PEEIREILRKAVD-EADVVLTTGGTGVGPRDVTPEALEEL 91 (144)
T ss_pred HHHHHHHHHCCCeEEEEeecCCC--HHHHHHHHHHHHh-CCCEEEECCCCCCCCCccHHHHHHHh
Confidence 45777888889887754433322 5667777766654 79999999887765 7766554443
No 265
>PRK10854 exopolyphosphatase; Provisional
Probab=56.48 E-value=13 Score=42.21 Aligned_cols=81 Identities=14% Similarity=0.141 Sum_probs=50.0
Q ss_pred hHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHh-CCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEec
Q psy2427 37 VTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTR-HGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVG 115 (660)
Q Consensus 37 ~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~-~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavG 115 (660)
++.+..+.++.++.+++.+|+...+++..-.+.+.+.+++ .|+++.+.++-+ +..+.-. .+.......+--+||-||
T Consensus 68 ~L~~F~~~~~~~~v~~v~~vATsAlReA~N~~~fl~~i~~~tGl~i~vIsG~E-EA~l~~~-gv~~~l~~~~~~lvvDIG 145 (513)
T PRK10854 68 CLSLFAERLQGFSPANVCIVGTHTLRQALNATDFLKRAEKVIPYPIEIISGNE-EARLIFM-GVEHTQPEKGRKLVIDIG 145 (513)
T ss_pred HHHHHHHHHHhCCCCeEEEEehHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHH-HHHHHHh-hhhcccCCCCCeEEEEeC
Confidence 3555566677888899999999888776444666665544 599999886532 2222111 111111111223899999
Q ss_pred Cchh
Q psy2427 116 GGSV 119 (660)
Q Consensus 116 GGsv 119 (660)
|||+
T Consensus 146 GGSt 149 (513)
T PRK10854 146 GGST 149 (513)
T ss_pred CCeE
Confidence 9996
No 266
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=56.37 E-value=24 Score=40.38 Aligned_cols=55 Identities=18% Similarity=0.275 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC
Q psy2427 92 TGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS 165 (660)
Q Consensus 92 ~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~ 165 (660)
+.+..+++.+.+++.+.|.+|-|||--.++.|..++...... ...+++|.||-|.
T Consensus 175 ~~e~~~~~~~~l~~l~Id~LViIGGddS~~~A~~Lae~~~~~-------------------g~~i~VIGVPKTI 229 (568)
T PLN02251 175 TPEQFKQAEETATKLDLDGLVVIGGDDSNTNACLLAEYFRAK-------------------NLKTRVIGCPKTI 229 (568)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhc-------------------CCCeeEEEeCceE
Confidence 567889999999999999999999999998888777654311 0118999999996
No 267
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=56.22 E-value=43 Score=34.15 Aligned_cols=80 Identities=10% Similarity=-0.026 Sum_probs=51.6
Q ss_pred EECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhC-CCeEEEEeCcccCCCHHHHHHHHHHhHhcCCC-
Q psy2427 32 RIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRH-GVKFELFDKVRVEPTGDSFLEATKFVRSVQCD- 109 (660)
Q Consensus 32 ~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~-gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D- 109 (660)
+-|.+....+-+...+.| .|++++.++.- ..+++.+.|++. |+.+.-+.. +.-+.++.+++++.+.+.++|
T Consensus 88 v~G~dl~~~ll~~~~~~~-~~v~llG~~~~----v~~~a~~~l~~~y~l~i~g~~~--Gyf~~~e~~~i~~~I~~s~~di 160 (243)
T PRK03692 88 VAGADLWEALMARAGKEG-TPVFLVGGKPE----VLAQTEAKLRTQWNVNIVGSQD--GYFTPEQRQALFERIHASGAKI 160 (243)
T ss_pred eChHHHHHHHHHHHHhcC-CeEEEECCCHH----HHHHHHHHHHHHhCCEEEEEeC--CCCCHHHHHHHHHHHHhcCCCE
Confidence 448887777777666666 78888876541 234555555433 565442221 223456677899999999999
Q ss_pred EEEEecCch
Q psy2427 110 AFIAVGGGS 118 (660)
Q Consensus 110 ~IIavGGGs 118 (660)
++||+|-..
T Consensus 161 l~VglG~Pk 169 (243)
T PRK03692 161 VTVAMGSPK 169 (243)
T ss_pred EEEECCCcH
Confidence 667777655
No 268
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=55.98 E-value=17 Score=41.19 Aligned_cols=81 Identities=11% Similarity=0.118 Sum_probs=50.2
Q ss_pred hHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHh-CCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEec
Q psy2427 37 VTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTR-HGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVG 115 (660)
Q Consensus 37 ~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~-~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavG 115 (660)
++.+..+.++.++..++.+|+...+++..-.+.+.+.+++ .|+++.+.++-+ +..+.-. .+.......+--.||=||
T Consensus 63 ~L~~F~~~~~~~~v~~i~~vATsAvReA~N~~~fl~~i~~~tGl~ievIsG~e-EA~l~~~-gv~~~l~~~~~~lviDIG 140 (496)
T PRK11031 63 CLRLFAERLQDIPPSQIRVVATATLRLAVNADEFLAKAQEILGCPVQVISGEE-EARLIYQ-GVAHTTGGADQRLVVDIG 140 (496)
T ss_pred HHHHHHHHHHhCCCCeEEEEEeHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHH-HHHHHHH-hhhhccCCCCCEEEEEec
Confidence 3455566667788889999999888776544666666654 499999887532 2222221 111112111212899999
Q ss_pred Cchh
Q psy2427 116 GGSV 119 (660)
Q Consensus 116 GGsv 119 (660)
|||+
T Consensus 141 GGSt 144 (496)
T PRK11031 141 GAST 144 (496)
T ss_pred CCee
Confidence 9996
No 269
>PRK12361 hypothetical protein; Provisional
Probab=55.79 E-value=57 Score=37.46 Aligned_cols=88 Identities=17% Similarity=0.146 Sum_probs=52.6
Q ss_pred CcChHHHHHHHHHhc--C-CCEEEEEECcccccc---chHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 34 GPGVTREVGMDMVNM--K-AQRVCVMTDPHLSKL---APVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 34 G~g~~~~l~~~l~~~--g-~~r~liVtd~~~~~~---~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
..+.+..+.++.+.. . .+|+++|..+..-.. ...+++.+.|++. +++.++.- .+ .....+.++.+.+.+
T Consensus 223 n~~q~~~l~~~~~~~~~~~~~~~~iI~NP~SG~g~~~~~~~~i~~~L~~~-~~~~v~~t---~~-~~~a~~la~~~~~~~ 297 (547)
T PRK12361 223 NKRQLRALEKMLEQGKLNIHKRAWLIANPVSGGGKWQEYGEQIQRELKAY-FDLTVKLT---TP-EISAEALAKQARKAG 297 (547)
T ss_pred CHHHHHHHHHHHHcCCcccCCceEEEECCCCCCCcHHHHHHHHHHHHhcC-CceEEEEC---CC-CccHHHHHHHHHhcC
Confidence 344555555444331 1 268889998764321 2457788888764 66654432 11 123456666666778
Q ss_pred CCEEEEecC-chhhhHHHHH
Q psy2427 108 CDAFIAVGG-GSVIDTCKAA 126 (660)
Q Consensus 108 ~D~IIavGG-GsviD~AK~~ 126 (660)
+|.||++|| |++-.++-.+
T Consensus 298 ~d~Viv~GGDGTl~ev~~~l 317 (547)
T PRK12361 298 ADIVIACGGDGTVTEVASEL 317 (547)
T ss_pred CCEEEEECCCcHHHHHHHHH
Confidence 899999999 6666665444
No 270
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=55.65 E-value=24 Score=40.22 Aligned_cols=55 Identities=20% Similarity=0.303 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC
Q psy2427 92 TGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS 165 (660)
Q Consensus 92 ~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~ 165 (660)
+.+..+++.+.+++.+.|.+|-|||--.++.|..++...... .-.+++|.||-|.
T Consensus 151 ~~e~~~~i~~~l~~~~Id~LviIGGddS~~~A~~Lae~~~~~-------------------g~~i~VIGVPKTI 205 (550)
T cd00765 151 TEDQFKQAEETAKKLDLDALVVIGGDDSNTNAALLAENFRSK-------------------GLKTRVIGVPKTI 205 (550)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhc-------------------CCCceEEEEeeee
Confidence 567889999999999999999999999999998877654311 0118999999986
No 271
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=55.16 E-value=70 Score=31.74 Aligned_cols=84 Identities=19% Similarity=0.207 Sum_probs=51.7
Q ss_pred EECcChHHH-HHHHHHh--cCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCC
Q psy2427 32 RIGPGVTRE-VGMDMVN--MKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQC 108 (660)
Q Consensus 32 ~~G~g~~~~-l~~~l~~--~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~ 108 (660)
..|.|+--+ |-+.+++ ++.+-++||++..-. ...+..++.|+.+..++.....+....-.++.+.+++.++
T Consensus 6 ~Sg~Gsn~~al~~~~~~~~l~~~i~~visn~~~~------~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (207)
T PLN02331 6 VSGGGSNFRAIHDACLDGRVNGDVVVVVTNKPGC------GGAEYARENGIPVLVYPKTKGEPDGLSPDELVDALRGAGV 79 (207)
T ss_pred EeCCChhHHHHHHHHHcCCCCeEEEEEEEeCCCC------hHHHHHHHhCCCEEEeccccCCCcccchHHHHHHHHhcCC
Confidence 356665433 4444443 334567778876421 1344555679998877654322222223466778899999
Q ss_pred CEEEEecCchhhh
Q psy2427 109 DAFIAVGGGSVID 121 (660)
Q Consensus 109 D~IIavGGGsviD 121 (660)
|.||.+|=+..+.
T Consensus 80 Dliv~agy~~il~ 92 (207)
T PLN02331 80 DFVLLAGYLKLIP 92 (207)
T ss_pred CEEEEeCcchhCC
Confidence 9999999888766
No 272
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=54.95 E-value=29 Score=39.77 Aligned_cols=56 Identities=16% Similarity=0.265 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC
Q psy2427 91 PTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS 165 (660)
Q Consensus 91 p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~ 165 (660)
.+.+..+++++.+++.+.|.+|-|||--.++.|..++...... ...+++|.||-|.
T Consensus 148 ~~~e~~~~i~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~-------------------~~~i~VIGIPkTI 203 (555)
T PRK07085 148 ETEEQKEACLETVKKLKLDGLVIIGGDDSNTNAAILAEYFAKH-------------------GCKTQVIGVPKTI 203 (555)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHh-------------------CCCccEEEEeeee
Confidence 3577899999999999999999999999999988777654310 0118999999996
No 273
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=54.28 E-value=66 Score=32.22 Aligned_cols=87 Identities=10% Similarity=0.117 Sum_probs=51.1
Q ss_pred HHHHHHHHhcCCCEEEEEECcccccc--chHHHHHHHHHhCCCeEE--EEeCcccCCCHHHHHHHHHH-hHh-cCCCEEE
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKL--APVKATLDSLTRHGVKFE--LFDKVRVEPTGDSFLEATKF-VRS-VQCDAFI 112 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~--~~~~~i~~~L~~~gi~~~--~~~~~~~~p~~~~v~~~~~~-~~~-~~~D~II 112 (660)
..+.+.+.+.|.+|++++++...... ...+-+.+.+++.|+... ... ..+.+.+...+.... +++ .++|+|+
T Consensus 111 ~~~~~~l~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ai~ 188 (270)
T cd06294 111 YDATEYLIKLGHKKIAFVGGDLDLEVTQDRLQGYKQALEDHGIPDRNEVII--SLDFSEEGGYKALKKLLEQHPRPTAIV 188 (270)
T ss_pred HHHHHHHHHcCCccEEEecCCcccHHHHHHHHHHHHHHHHcCCCCCcceEE--ecCCchHHHHHHHHHHHhCCCCCCEEE
Confidence 34667777778899999987543221 123446777887775321 111 112233344444443 333 3589999
Q ss_pred EecCchhhhHHHHHH
Q psy2427 113 AVGGGSVIDTCKAAN 127 (660)
Q Consensus 113 avGGGsviD~AK~~a 127 (660)
+.++....-+.+++.
T Consensus 189 ~~~d~~a~g~~~al~ 203 (270)
T cd06294 189 ATDDLLALGVLKVLN 203 (270)
T ss_pred ECChHHHHHHHHHHH
Confidence 988877777777664
No 274
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=54.07 E-value=59 Score=30.86 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=36.2
Q ss_pred HHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhH-hcCCCEEEEecCchhh
Q psy2427 68 KATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVR-SVQCDAFIAVGGGSVI 120 (660)
Q Consensus 68 ~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~-~~~~D~IIavGGGsvi 120 (660)
.-+...|++.|+++..+.-+. -+.+.+.+.++.+. ..++|+||.-||-++.
T Consensus 25 ~~l~~~L~~~G~~v~~~~iv~--Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g 76 (163)
T TIGR02667 25 QYLVERLTEAGHRLADRAIVK--DDIYQIRAQVSAWIADPDVQVILITGGTGFT 76 (163)
T ss_pred HHHHHHHHHCCCeEEEEEEcC--CCHHHHHHHHHHHHhcCCCCEEEECCCcCCC
Confidence 457777989999877654442 23566777776664 3679999999887664
No 275
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=54.02 E-value=65 Score=33.56 Aligned_cols=86 Identities=13% Similarity=0.123 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 38 TREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 38 ~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
...+.+++.+.|.+|+.+|++...+.....+.+.+.++ + .+. ....-.....+....+..+++.++|.|+..+.+
T Consensus 122 ~~~~~~~l~~~g~~~v~il~~~~~~~~~~~~~~~~~~~--~-~~~--~~~~~~~~~~d~~~~i~~l~~~~~d~i~~~~~~ 196 (333)
T cd06332 122 HEAMGKYAADKGYKKVVIIAPDYAAGKDAVAGFKRTFK--G-EVV--EEVYTPLGQLDFSAELAQIRAAKPDAVFVFLPG 196 (333)
T ss_pred HHHHHHHHHHhCCceEEEEecCcchhHHHHHHHHHhhc--E-EEe--eEEecCCCCcchHHHHHHHHhcCCCEEEEeccc
Confidence 34567778778889999998766543334455556664 2 111 111111112234445666778899999987653
Q ss_pred hhhhHHHHHHhHh
Q psy2427 118 SVIDTCKAANLYY 130 (660)
Q Consensus 118 sviD~AK~~a~~~ 130 (660)
. +..+++....
T Consensus 197 ~--~~~~~~~~~~ 207 (333)
T cd06332 197 G--MAVNFVKQYD 207 (333)
T ss_pred c--hHHHHHHHHH
Confidence 2 4455554433
No 276
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=53.99 E-value=2.2e+02 Score=30.23 Aligned_cols=126 Identities=13% Similarity=0.019 Sum_probs=76.8
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCC
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPI 145 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~ 145 (660)
.+.-+.+.+++.|..+.++.. +.+.+...+..+.+...++|.||-.|-..--+.-+.+.. .+
T Consensus 76 i~~gi~~~~~~~gy~~~l~~~---~~~~~~e~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~---~~------------ 137 (333)
T COG1609 76 ILKGIEEAAREAGYSLLLANT---DDDPEKEREYLETLLQKRVDGLILLGERPNDSLLELLAA---AG------------ 137 (333)
T ss_pred HHHHHHHHHHHcCCEEEEECC---CCCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHh---cC------------
Confidence 457788889999999887754 337889999999999999999999993333333333321 11
Q ss_pred CCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceee---eecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHH
Q psy2427 146 GKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTG---IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFC 222 (660)
Q Consensus 146 ~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~---~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~ 222 (660)
+|+|.|-.... + -.--+|..|...+.+.. +.... .-..+++-... .....+....|..+++.
T Consensus 138 ----------~P~V~i~~~~~-~--~~~~~V~~Dn~~~~~~a~~~L~~~G-~~~i~~i~~~~-~~~~~~~R~~Gf~~al~ 202 (333)
T COG1609 138 ----------IPVVVIDRSPP-G--LGVPSVGIDNFAGAYLATEHLIELG-HRRIAFIGGPL-DSSASRERLEGYRAALR 202 (333)
T ss_pred ----------CCEEEEeCCCc-c--CCCCEEEEChHHHHHHHHHHHHHCC-CceEEEEeCCC-ccccHhHHHHHHHHHHH
Confidence 89999988764 2 22224444433222211 11111 12344444444 44455777788888876
Q ss_pred HH
Q psy2427 223 HA 224 (660)
Q Consensus 223 ha 224 (660)
..
T Consensus 203 ~~ 204 (333)
T COG1609 203 EA 204 (333)
T ss_pred HC
Confidence 54
No 277
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=53.80 E-value=91 Score=34.13 Aligned_cols=42 Identities=26% Similarity=0.375 Sum_probs=29.1
Q ss_pred HhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC
Q psy2427 102 FVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS 165 (660)
Q Consensus 102 ~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~ 165 (660)
+..+.++|.||++||+.=..++-.+-..+ |.| +|=+.|-|.+
T Consensus 88 l~~~g~i~Gvi~~GGs~GT~lat~aMr~L-------------PiG---------~PKlmVST~A 129 (403)
T PF06792_consen 88 LYDEGKIDGVIGIGGSGGTALATAAMRAL-------------PIG---------FPKLMVSTMA 129 (403)
T ss_pred HHhcCCccEEEEecCCccHHHHHHHHHhC-------------CCC---------CCeEEEEccC
Confidence 44456789999999987766665543322 112 7888999998
No 278
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=53.79 E-value=26 Score=32.78 Aligned_cols=51 Identities=20% Similarity=0.202 Sum_probs=34.6
Q ss_pred HHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh-cCCCEEEEecCchhh
Q psy2427 68 KATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS-VQCDAFIAVGGGSVI 120 (660)
Q Consensus 68 ~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~D~IIavGGGsvi 120 (660)
.-+.+.|++.|+++..+.-+.. +.+.+.+.++.+.+ .++|.||..||-|+.
T Consensus 23 ~~l~~~l~~~G~~v~~~~~v~D--d~~~i~~~l~~~~~~~~~DlVittGG~s~g 74 (152)
T cd00886 23 PALVELLEEAGHEVVAYEIVPD--DKDEIREALIEWADEDGVDLILTTGGTGLA 74 (152)
T ss_pred HHHHHHHHHcCCeeeeEEEcCC--CHHHHHHHHHHHHhcCCCCEEEECCCcCCC
Confidence 4577789999988765443332 24566666665544 379999999987765
No 279
>PRK02399 hypothetical protein; Provisional
Probab=53.54 E-value=1.3e+02 Score=32.92 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=30.6
Q ss_pred HhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCc
Q psy2427 102 FVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGT 167 (660)
Q Consensus 102 ~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gt 167 (660)
+.++.++|.||++||+.=.+++-.+...+- .| +|=+.|-|.++.
T Consensus 90 L~~~g~i~gviglGGs~GT~lat~aMr~LP-------------iG---------~PKlmVSTmAsg 133 (406)
T PRK02399 90 LYERGDVAGVIGLGGSGGTALATPAMRALP-------------IG---------VPKLMVSTMASG 133 (406)
T ss_pred HHhcCCccEEEEecCcchHHHHHHHHHhCC-------------CC---------CCeEEEEccccC
Confidence 334567999999999987777655533221 11 788999999853
No 280
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=53.46 E-value=71 Score=33.25 Aligned_cols=77 Identities=16% Similarity=0.189 Sum_probs=54.0
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCC--CeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHh
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHG--VKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANL 128 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~g--i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~ 128 (660)
+++.+|+-.... ...+..+.+.|++.. .++.+|+. --++|.+.=+++.++++ ++|++|-|||-..-++.|++-.
T Consensus 154 ~~v~vvsQTT~~-~~~~~~i~~~l~~~~~~~~~~~~nT-IC~AT~~RQ~a~~~la~--~vD~miVVGg~nSsNT~rL~ei 229 (280)
T TIGR00216 154 DLLGVVSQTTLS-QEDTKEIVAELKARVPQKEVPVFNT-ICYATQNRQDAVKELAP--EVDLMIVIGGKNSSNTTRLYEI 229 (280)
T ss_pred CcEEEEEcCCCc-HHHHHHHHHHHHHhCCCcCCCCCCC-cccccHHHHHHHHHHHh--hCCEEEEECCCCCchHHHHHHH
Confidence 567777654443 335588888888765 44444433 34666666666666666 4899999999999999999866
Q ss_pred Hhc
Q psy2427 129 YYC 131 (660)
Q Consensus 129 ~~~ 131 (660)
...
T Consensus 230 ~~~ 232 (280)
T TIGR00216 230 AEE 232 (280)
T ss_pred HHH
Confidence 654
No 281
>PRK02877 hypothetical protein; Provisional
Probab=53.35 E-value=10 Score=33.39 Aligned_cols=60 Identities=15% Similarity=0.188 Sum_probs=36.9
Q ss_pred EEECccccccchHHHHHHHHHhC-CCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEe
Q psy2427 55 VMTDPHLSKLAPVKATLDSLTRH-GVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAV 114 (660)
Q Consensus 55 iVtd~~~~~~~~~~~i~~~L~~~-gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIav 114 (660)
+|++..+.....++++...|++- |=+...|...-.+...+.++++.+.+++.++|.||+|
T Consensus 20 ~V~G~~V~~~n~~kd~~a~l~~i~GG~~~~Y~~~l~~aR~~A~~rm~~~A~~lGAnAVIgv 80 (106)
T PRK02877 20 VVTGEAILGANIFRDFFAGIRDIVGGRSGAYEKELRKAREIAFEELGEQARALGADAVVGI 80 (106)
T ss_pred EEEEEEEEeechHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 44444444333445555555431 2222234433345667889999999999999999997
No 282
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=53.32 E-value=44 Score=30.89 Aligned_cols=60 Identities=25% Similarity=0.351 Sum_probs=36.5
Q ss_pred EEEEEECcccccc--chHHHHHHHHHhCCCeEE---EEeCcccCCCHHHHHHHH-HHhHhcCCCEEEEec
Q psy2427 52 RVCVMTDPHLSKL--APVKATLDSLTRHGVKFE---LFDKVRVEPTGDSFLEAT-KFVRSVQCDAFIAVG 115 (660)
Q Consensus 52 r~liVtd~~~~~~--~~~~~i~~~L~~~gi~~~---~~~~~~~~p~~~~v~~~~-~~~~~~~~D~IIavG 115 (660)
|+.||..+.-.+. ..++-..+.|++.|+... ++. .|..-++--++ ..++..++|.||++|
T Consensus 2 ri~IV~s~~n~~i~~~L~~ga~~~l~~~g~~~~~i~v~~----VPGa~EiP~a~~~l~~~~~~DavI~LG 67 (138)
T TIGR00114 2 RVGIVIARFNRDITDMLLKGAIDALKRLGAEVDNIDVIW----VPGAFELPLAVKKLAETGKYDAVIALG 67 (138)
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHHHHcCCCccceEEEE----CCcHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 5677776542221 255677788988887633 332 34444444444 444557799999997
No 283
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=53.12 E-value=71 Score=33.36 Aligned_cols=89 Identities=11% Similarity=0.065 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCCCEEEEEECccccc---cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEec
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSK---LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVG 115 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~---~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavG 115 (660)
..+.++|.+.|.+|+.+++++.... ....+-+.+.+++.|+.+....-...+.+.+...++.+.+.+.++|+|++.+
T Consensus 165 ~~a~~~L~~~G~~~I~~i~g~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~p~ai~~~~ 244 (329)
T TIGR01481 165 KEAVGELIAKGHKSIAFVGGPLSDSINGEDRLEGYKEALNKAGIQFGEDLVCEGKYSYDAGYKAFAELKGSLPTAVFVAS 244 (329)
T ss_pred HHHHHHHHHCCCCeEEEEecCcccccchHHHHHHHHHHHHHcCCCCCcceEEecCCChHHHHHHHHHHhCCCCCEEEEcC
Confidence 4466777788989999997643211 1122446677888886532100011233444455555555555789999988
Q ss_pred CchhhhHHHHHH
Q psy2427 116 GGSVIDTCKAAN 127 (660)
Q Consensus 116 GGsviD~AK~~a 127 (660)
...++-+-+++.
T Consensus 245 d~~A~g~~~al~ 256 (329)
T TIGR01481 245 DEMAAGILNAAM 256 (329)
T ss_pred cHHHHHHHHHHH
Confidence 776665555543
No 284
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=53.00 E-value=1e+02 Score=33.35 Aligned_cols=85 Identities=8% Similarity=0.051 Sum_probs=59.6
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEe--CcccCCCHHHHHHHHHHhHhcCCCEEEEecC
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFD--KVRVEPTGDSFLEATKFVRSVQCDAFIAVGG 116 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~--~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG 116 (660)
..+.+.++.++-+++.||++.. .....++.+.+.+++.|.++.... .+.-.+...+....+..++..++|.||-.
T Consensus 107 ~ai~d~i~~~~wk~vailYdsd-~gl~~lq~l~~~~~~~g~~V~~~~~~~i~~~~~~~d~~~~L~~ik~~~~~~Iil~-- 183 (370)
T cd06389 107 GALLSLIEYYQWDKFAYLYDSD-RGLSTLQAVLDSAAEKKWQVTAINVGNINNDRKDEAYRSLFQDLENKKERRVILD-- 183 (370)
T ss_pred hHHHHHHHhcCCcEEEEEecCc-hHHHHHHHHHHhhccCCceEEEEEeecCCCccchHHHHHHHHHhccccceEEEEE--
Confidence 3455557888999999999854 555566888888888887765332 22223335578888888898999998875
Q ss_pred chhhhHHHHH
Q psy2427 117 GSVIDTCKAA 126 (660)
Q Consensus 117 GsviD~AK~~ 126 (660)
++.-|+..++
T Consensus 184 ~~~~~~~~il 193 (370)
T cd06389 184 CERDKVNDIV 193 (370)
T ss_pred CCHHHHHHHH
Confidence 4555555555
No 285
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=52.46 E-value=43 Score=30.38 Aligned_cols=57 Identities=14% Similarity=0.148 Sum_probs=38.5
Q ss_pred EEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEe
Q psy2427 52 RVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAV 114 (660)
Q Consensus 52 r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIav 114 (660)
|++||.+... ...+++...|++.+++..++.... +.....++++.+.+. ++|+.|.+
T Consensus 1 kVFIvhg~~~---~~~~~v~~~L~~~~~ep~i~~~~~-~~g~tiie~le~~~~--~~~faIvl 57 (125)
T PF10137_consen 1 KVFIVHGRDL---AAAEAVERFLEKLGLEPIIWHEQP-NLGQTIIEKLEEAAD--SVDFAIVL 57 (125)
T ss_pred CEEEEeCCCH---HHHHHHHHHHHhCCCceEEeecCC-CCCCchHHHHHHHhc--cCCEEEEE
Confidence 6788888554 244678888887788888776543 555666666666665 46766666
No 286
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=52.41 E-value=70 Score=32.04 Aligned_cols=88 Identities=15% Similarity=0.101 Sum_probs=53.0
Q ss_pred HHHHHHHhcCCCEEEEEECccccc--cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh--cCCCEEEEec
Q psy2427 40 EVGMDMVNMKAQRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS--VQCDAFIAVG 115 (660)
Q Consensus 40 ~l~~~l~~~g~~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~IIavG 115 (660)
.+.++|.+.|.+|+.++.+..-.. ....+-+.+.+++.|+++....-...+.+.+...+.++.+.+ .++|+|++.+
T Consensus 104 ~a~~~L~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 183 (265)
T cd06285 104 LATRHLLDLGHRRIAVLAGPDYASTARDRLAGFRAALAEAGIEVPPERIVYSGFDIEGGEAAAEKLLRSDSPPTAIFAVN 183 (265)
T ss_pred HHHHHHHHCCCccEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHHcCCCCCCEEEEcC
Confidence 466777778989999998653211 112344667788777754211011223444444444444432 3579999999
Q ss_pred CchhhhHHHHHH
Q psy2427 116 GGSVIDTCKAAN 127 (660)
Q Consensus 116 GGsviD~AK~~a 127 (660)
...++-+.+++.
T Consensus 184 d~~a~g~~~~l~ 195 (265)
T cd06285 184 DFAAIGVMGAAR 195 (265)
T ss_pred cHHHHHHHHHHH
Confidence 988887777765
No 287
>PRK12855 hypothetical protein; Provisional
Probab=52.04 E-value=8.8 Score=33.56 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=22.6
Q ss_pred cCCCHHHHHHHHHHhHhcCCCEEEEe
Q psy2427 89 VEPTGDSFLEATKFVRSVQCDAFIAV 114 (660)
Q Consensus 89 ~~p~~~~v~~~~~~~~~~~~D~IIav 114 (660)
.+...+.++++.+.+++.++|.||+|
T Consensus 55 ~~aR~~A~~rm~~~A~~lGAnAVVgv 80 (103)
T PRK12855 55 KEARDIAMEEMKTLARQKNANAIVGI 80 (103)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 35567889999999999999999987
No 288
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=51.96 E-value=73 Score=31.82 Aligned_cols=89 Identities=10% Similarity=0.045 Sum_probs=51.8
Q ss_pred HHHHHHHHhcCCCEEEEEECccccc--cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh--cCCCEEEEe
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS--VQCDAFIAV 114 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~IIav 114 (660)
..+.+++.+.|.+|+.++++..-.. ....+-+.+.+++.++......-...+.+.+...+..+.+.+ ..+|+|++.
T Consensus 109 ~~a~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 188 (268)
T cd06271 109 YQAVRRLIALGHRRIALLNPPEDLTFAQHRRAGYRRALAEAGLPLDPALIVSGDMTEEGGYAAAAELLALPDRPTAIVCS 188 (268)
T ss_pred HHHHHHHHHcCCCcEEEecCccccchHHHHHHHHHHHHHHhCCCCCCceEEeCCCChHHHHHHHHHHHhCCCCCCEEEEc
Confidence 4466777778989999998653221 112355677888777653111111123444555555554433 247999998
Q ss_pred cCchhhhHHHHHH
Q psy2427 115 GGGSVIDTCKAAN 127 (660)
Q Consensus 115 GGGsviD~AK~~a 127 (660)
+....+-+.+++.
T Consensus 189 ~d~~a~g~~~al~ 201 (268)
T cd06271 189 SELMALGVLAALA 201 (268)
T ss_pred CcHHHHHHHHHHH
Confidence 8766665555553
No 289
>PRK07586 hypothetical protein; Validated
Probab=51.17 E-value=46 Score=37.78 Aligned_cols=76 Identities=8% Similarity=0.020 Sum_probs=45.9
Q ss_pred hHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEE--Ee-------Ccc--cCCCHHHHHHHHHHhHh
Q psy2427 37 VTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFEL--FD-------KVR--VEPTGDSFLEATKFVRS 105 (660)
Q Consensus 37 ~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~--~~-------~~~--~~p~~~~v~~~~~~~~~ 105 (660)
.++++.+.|.+ .+|++||.|..+......+.+.+..+..|+.+.. +. ++- .++... -....+.++
T Consensus 186 ~v~~~~~~L~~--A~rPvi~~G~g~~~~~a~~~l~~lae~l~~pV~t~~~~~~~~~gkg~~~~~~~~~~-~~~~~~~~~- 261 (514)
T PRK07586 186 AVEAAAAALRS--GEPTVLLLGGRALRERGLAAAARIAAATGARLLAETFPARMERGAGRPAVERLPYF-AEQALAQLA- 261 (514)
T ss_pred HHHHHHHHHHh--cCCCEEEeCCcccchhHHHHHHHHHHHHCCCEEecccccccccCCCCCCcccccch-HHHHHHHHh-
Confidence 34555555544 4899999999887665667777777778988753 21 111 111111 122223333
Q ss_pred cCCCEEEEecCc
Q psy2427 106 VQCDAFIAVGGG 117 (660)
Q Consensus 106 ~~~D~IIavGGG 117 (660)
++|+||+||.-
T Consensus 262 -~aDlvl~vG~~ 272 (514)
T PRK07586 262 -GVRHLVLVGAK 272 (514)
T ss_pred -cCCEEEEECCC
Confidence 68999999965
No 290
>PRK12474 hypothetical protein; Provisional
Probab=51.00 E-value=41 Score=38.29 Aligned_cols=75 Identities=16% Similarity=0.233 Sum_probs=45.7
Q ss_pred hHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEE--E-------eCccc---CCCHHHHHHHHHHhH
Q psy2427 37 VTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFEL--F-------DKVRV---EPTGDSFLEATKFVR 104 (660)
Q Consensus 37 ~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~--~-------~~~~~---~p~~~~v~~~~~~~~ 104 (660)
.++++.+.|.+ .+|++|+.|..+...+..+.+.+..+..|+.+.. + .++-+ +|.. .....+.++
T Consensus 190 ~i~~~~~~L~~--A~rPvil~G~g~~~~~a~~~l~~lae~~g~PV~~t~~~~~~~~gkg~~~~~~~~~~--~~~~~~~~~ 265 (518)
T PRK12474 190 TVERIAALLRN--GKKSALLLRGSALRGAPLEAAGRIQAKTGVRLYCDTFAPRIERGAGRVPIERIPYF--HEQITAFLK 265 (518)
T ss_pred HHHHHHHHHHc--CCCcEEEECCccchhhHHHHHHHHHHHHCCCEEEecCcccccCCCCCCCCcccccc--hHHHHHHHh
Confidence 45555555544 4899999998876665667788888888998653 1 11111 1222 112222333
Q ss_pred hcCCCEEEEecCc
Q psy2427 105 SVQCDAFIAVGGG 117 (660)
Q Consensus 105 ~~~~D~IIavGGG 117 (660)
++|+||+||.-
T Consensus 266 --~aDlvl~lG~~ 276 (518)
T PRK12474 266 --DVEQLVLVGAK 276 (518)
T ss_pred --hCCEEEEECCC
Confidence 68999999954
No 291
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.77 E-value=41 Score=34.86 Aligned_cols=57 Identities=12% Similarity=0.266 Sum_probs=31.9
Q ss_pred HHHHHHHHhCCCeEEEEeCcccC-C-CHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHH
Q psy2427 68 KATLDSLTRHGVKFELFDKVRVE-P-TGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAA 126 (660)
Q Consensus 68 ~~i~~~L~~~gi~~~~~~~~~~~-p-~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~ 126 (660)
.++.+.|++.|+++.+....... . ........ +.. ..++|+||.+|| |+.+.+++.+
T Consensus 3 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~-~~~-~~~~d~vi~iGGDGT~L~aa~~~ 62 (272)
T PRK02231 3 KNLFHWLKERGYQVLVEKEIAEQLNLPENHLASL-EEI-GQRAQLAIVIGGDGNMLGRARVL 62 (272)
T ss_pred HHHHHHHHHCCCEEEEecchhhhcCccccccCCh-HHh-CcCCCEEEEECCcHHHHHHHHHh
Confidence 56777788888887753321000 0 00000000 111 236899999999 8888777765
No 292
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=50.77 E-value=39 Score=34.02 Aligned_cols=76 Identities=14% Similarity=0.175 Sum_probs=46.1
Q ss_pred CcChHHHHHHHHHhc--CCCEEEEEECccccccchHHHHHHHHHhCCCeEE---EEeCcccCCCHHHHHHHHHHhHhcCC
Q psy2427 34 GPGVTREVGMDMVNM--KAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE---LFDKVRVEPTGDSFLEATKFVRSVQC 108 (660)
Q Consensus 34 G~g~~~~l~~~l~~~--g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~---~~~~~~~~p~~~~v~~~~~~~~~~~~ 108 (660)
..+.-+.|.+.+... ..+|++++.+.... +.+.+.|++.|+.+. +|......... .++.+.+++.++
T Consensus 100 ~~~~~e~L~~~~~~~~~~~~~vL~~rg~~~r-----~~l~~~L~~~G~~v~~~~vY~~~~~~~~~---~~~~~~l~~~~~ 171 (240)
T PRK09189 100 GGGDGVRLAETVAAALAPTARLLYLAGRPRA-----PVFEDRLAAAGIPFRVAECYDMLPVMYSP---ATLSAILGGAPF 171 (240)
T ss_pred CCCCHHHHHHHHHHhcCCCCcEEEeccCccc-----chhHHHHHhCCCeeEEEEEEEeecCCCCh---HHHHHHHhcCCC
Confidence 344455666666442 34789999887643 567888998898754 45433222222 345566677778
Q ss_pred CEEEEecCc
Q psy2427 109 DAFIAVGGG 117 (660)
Q Consensus 109 D~IIavGGG 117 (660)
|.|+=.=+-
T Consensus 172 d~i~f~S~~ 180 (240)
T PRK09189 172 DAVLLYSRV 180 (240)
T ss_pred CEEEEeCHH
Confidence 877654433
No 293
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=50.66 E-value=1.8e+02 Score=29.25 Aligned_cols=85 Identities=15% Similarity=0.173 Sum_probs=52.4
Q ss_pred HHHHHHHHhc--CCCEEEEEECccc-cccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEec
Q psy2427 39 REVGMDMVNM--KAQRVCVMTDPHL-SKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVG 115 (660)
Q Consensus 39 ~~l~~~l~~~--g~~r~liVtd~~~-~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavG 115 (660)
..+.+.+.+. |.+|+.++.+... ......+.+++.+++.|+++.... . .+.++..+.++.+.. ++|+|++.+
T Consensus 118 ~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~r~~g~~~~~~~~g~~~~~~~-~---~~~~~~~~~~~~~~~-~~dai~~~~ 192 (281)
T cd06325 118 ETQLELLKKLLPDAKTVGVLYNPSEANSVVQVKELKKAAAKLGIEVVEAT-V---SSSNDVQQAAQSLAG-KVDAIYVPT 192 (281)
T ss_pred HHHHHHHHHHCCCCcEEEEEeCCCCccHHHHHHHHHHHHHhCCCEEEEEe-c---CCHHHHHHHHHHhcc-cCCEEEEcC
Confidence 4455667765 8899999876542 222234667788888888754321 1 233444455555543 469999988
Q ss_pred CchhhhHHHHHHh
Q psy2427 116 GGSVIDTCKAANL 128 (660)
Q Consensus 116 GGsviD~AK~~a~ 128 (660)
-..+..+.+.+..
T Consensus 193 d~~a~~~~~~~~~ 205 (281)
T cd06325 193 DNTVASAMEAVVK 205 (281)
T ss_pred chhHHhHHHHHHH
Confidence 7776666665543
No 294
>PRK01119 hypothetical protein; Provisional
Probab=50.62 E-value=9.1 Score=33.66 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=22.5
Q ss_pred cCCCHHHHHHHHHHhHhcCCCEEEEe
Q psy2427 89 VEPTGDSFLEATKFVRSVQCDAFIAV 114 (660)
Q Consensus 89 ~~p~~~~v~~~~~~~~~~~~D~IIav 114 (660)
.+...+.++++.+.+++.++|.||+|
T Consensus 55 ~~aR~~A~~rm~~~A~~lGAnAVIgv 80 (106)
T PRK01119 55 INAREEAIREMEQRAKDIGANAVIGV 80 (106)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 35567789999999999999999995
No 295
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=50.59 E-value=90 Score=31.33 Aligned_cols=88 Identities=10% Similarity=0.092 Sum_probs=51.1
Q ss_pred HHHHHHHHhcCCCEEEEEECcccc--ccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc--CCCEEEEe
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLS--KLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV--QCDAFIAV 114 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~--~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~D~IIav 114 (660)
..+.+++.+.|.+|+.++.+.... .....+-+++.+++.|+.+........+.+.+...+.++.+.+. ++|+|++-
T Consensus 105 ~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 184 (268)
T cd06270 105 YLATEHLIELGHRKIACITGPLTKEDARLRLQGYRDALAEAGIALDESLIIEGDFTEEGGYAAMQELLARGAPFTAVFCA 184 (268)
T ss_pred HHHHHHHHHCCCceEEEEeCCcccccHHHHHHHHHHHHHHcCCCCCcceEEECCCCHHHHHHHHHHHHhCCCCCCEEEEc
Confidence 446677777788999998864321 11223446778888776532111112244555555555544433 47999999
Q ss_pred cCchhhhHHHHH
Q psy2427 115 GGGSVIDTCKAA 126 (660)
Q Consensus 115 GGGsviD~AK~~ 126 (660)
++..+.-+.+++
T Consensus 185 ~d~~a~g~~~~l 196 (268)
T cd06270 185 NDEMAAGAISAL 196 (268)
T ss_pred CcHHHHHHHHHH
Confidence 877665555544
No 296
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=50.47 E-value=47 Score=31.29 Aligned_cols=61 Identities=30% Similarity=0.417 Sum_probs=39.3
Q ss_pred CEEEEEECcccccc--chHHHHHHHHHhCCCe---EEEEeCcccCCCHHHHHHHHH-HhHhcCCCEEEEec
Q psy2427 51 QRVCVMTDPHLSKL--APVKATLDSLTRHGVK---FELFDKVRVEPTGDSFLEATK-FVRSVQCDAFIAVG 115 (660)
Q Consensus 51 ~r~liVtd~~~~~~--~~~~~i~~~L~~~gi~---~~~~~~~~~~p~~~~v~~~~~-~~~~~~~D~IIavG 115 (660)
-|+.||..+.-... ..++-..+.|++.|+. +.+|. .|..-++--+++ .++..++|.||++|
T Consensus 13 ~riaIV~s~~n~~i~~~l~~ga~~~l~~~gv~~~~i~v~~----VPGa~EiP~a~~~l~~~~~~DavIalG 79 (154)
T PRK00061 13 LRIGIVVARFNDFITDALLEGALDALKRHGVSEENIDVVR----VPGAFEIPLAAKKLAESGKYDAVIALG 79 (154)
T ss_pred CEEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccceEEEE----CCCHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 58888887653321 2557778889888853 33442 455555544444 44456799999997
No 297
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=50.39 E-value=39 Score=37.07 Aligned_cols=53 Identities=15% Similarity=0.213 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhc-CCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC
Q psy2427 93 GDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYC-DPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS 165 (660)
Q Consensus 93 ~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~-~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~ 165 (660)
.+..+++++.++++++|.+|.|||-=.++.|.-++.... ++ -.+|+|.||=|.
T Consensus 98 ~~~~~~~~~~L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g--------------------~~i~vvgIPkTI 151 (403)
T PRK06555 98 ENPLKVAAERLAADGVDILHTIGGDDTNTTAADLAAYLAENG--------------------YDLTVVGLPKTI 151 (403)
T ss_pred hHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHHhC--------------------CCceEEEeeeee
Confidence 456889999999999999999999999988877665432 11 018999999996
No 298
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=50.24 E-value=75 Score=32.73 Aligned_cols=89 Identities=15% Similarity=0.092 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCCCEEEEEECcccccc--chHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh--cCCCEEEEe
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKL--APVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS--VQCDAFIAV 114 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~--~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~IIav 114 (660)
..+.++|.+.|.+++.++++...... ....-+++.+++.|+.+........+-+.+...+.++.+.+ ..+|+|++.
T Consensus 141 ~~a~~~l~~~G~~~I~~l~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 220 (309)
T PRK11041 141 FEAVNYLHELGHKRIACIAGPEEMPLCHYRLQGYVQALRRCGITVDPQYIARGDFTFEAGAKALKQLLDLPQPPTAVFCH 220 (309)
T ss_pred HHHHHHHHHcCCceEEEEeCCccccchHHHHHHHHHHHHHcCCCCCHHHeEeCCCCHHHHHHHHHHHHcCCCCCCEEEEc
Confidence 34566777789899999986542211 12234567777777754210001123345555555555433 248999999
Q ss_pred cCchhhhHHHHHH
Q psy2427 115 GGGSVIDTCKAAN 127 (660)
Q Consensus 115 GGGsviD~AK~~a 127 (660)
+++..+-+.+++.
T Consensus 221 ~d~~a~gv~~al~ 233 (309)
T PRK11041 221 SDVMALGALSQAK 233 (309)
T ss_pred CcHHHHHHHHHHH
Confidence 9888887666654
No 299
>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U.
Probab=49.88 E-value=39 Score=36.30 Aligned_cols=93 Identities=12% Similarity=0.110 Sum_probs=55.9
Q ss_pred ceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCC--HHHHHH
Q psy2427 21 EYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPT--GDSFLE 98 (660)
Q Consensus 21 ~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~--~~~v~~ 98 (660)
.+.|+..++... ....+..++.+.|.+|+.+++....+.....+.+.+.+++.|+++.....++...+ ..+...
T Consensus 103 ~~~Fr~~~~~~~----~~~ala~~~~~~g~kkvaii~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~~~~~d~s~ 178 (347)
T TIGR03863 103 ANLLHTLPSRAM----LADALAQYLAAKRWRRILLIQGPLPADALYADAFRRSAKRFGAKIVAERPFTFSGDPRRTDQSE 178 (347)
T ss_pred CCEEEecCChHh----HHHHHHHHHHHcCCCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEEeEEeccCCchhhhhccc
Confidence 356665543332 22335666666688999999987766666678899999999988764333332221 122222
Q ss_pred HHHHhHhcCCCEEEEecCc
Q psy2427 99 ATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 99 ~~~~~~~~~~D~IIavGGG 117 (660)
.....+..++|+|+-.+-|
T Consensus 179 ~~~~~~~s~pDvv~~~~~~ 197 (347)
T TIGR03863 179 VPLFTQGADYDVVVVADEA 197 (347)
T ss_pred CceeecCCCCCEEEEecch
Confidence 1222334789988876433
No 300
>COG0393 Uncharacterized conserved protein [Function unknown]
Probab=49.52 E-value=10 Score=33.23 Aligned_cols=59 Identities=10% Similarity=0.196 Sum_probs=36.7
Q ss_pred EECccccccchHHHHHHHHHh-CCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEe
Q psy2427 56 MTDPHLSKLAPVKATLDSLTR-HGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAV 114 (660)
Q Consensus 56 Vtd~~~~~~~~~~~i~~~L~~-~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIav 114 (660)
|++..+.......++.+.+++ .|=+...|...-.+...+.++++.+.+++.++|.||+|
T Consensus 21 v~G~~V~g~n~~~d~~agir~i~GGe~~~Y~~~l~~aR~~Al~rm~~~A~~lGAnAVVgv 80 (108)
T COG0393 21 VTGETVRGANVGRDIFAGIRDIVGGEIKAYEKMLAEAREEALERMVDEAEALGANAVVGV 80 (108)
T ss_pred EEEEEEEEeeehhhHHHhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 333333333333444444433 13333345554456778899999999999999999997
No 301
>PRK00967 hypothetical protein; Provisional
Probab=49.31 E-value=9 Score=33.65 Aligned_cols=25 Identities=8% Similarity=0.093 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHHhHhcCCCEEEEe
Q psy2427 90 EPTGDSFLEATKFVRSVQCDAFIAV 114 (660)
Q Consensus 90 ~p~~~~v~~~~~~~~~~~~D~IIav 114 (660)
+...+.++++.+.+++.++|.||+|
T Consensus 56 ~aR~eA~~rm~~~A~~~GAnAIIgv 80 (105)
T PRK00967 56 EARDIAIDRMKEEAKQKGANAIVGM 80 (105)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 4557789999999999999999997
No 302
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=48.62 E-value=1e+02 Score=32.44 Aligned_cols=97 Identities=12% Similarity=0.088 Sum_probs=60.7
Q ss_pred ceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECcccc-ccchHHHHHHHH-HhCCCeEEEEeCcccCCCHHHHHH
Q psy2427 21 EYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLS-KLAPVKATLDSL-TRHGVKFELFDKVRVEPTGDSFLE 98 (660)
Q Consensus 21 ~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~-~~~~~~~i~~~L-~~~gi~~~~~~~~~~~p~~~~v~~ 98 (660)
-+.|++-|++-.-+...+-+..+.++.++. .++-||....- .......+...+ ++.|+++...--. -+-+...+..
T Consensus 24 ~vS~E~~PPk~~~~~~~l~~~~~~l~~~~p-~fvsVT~~~~~~~~~r~~~~a~~i~~~~g~~~i~Hltc-r~~n~~~l~~ 101 (296)
T PRK09432 24 NVSFEFFPPRTSEMEQTLWNSIDRLSSLKP-KFVSVTYGANSGERDRTHSIIKGIKKRTGLEAAPHLTC-IDATPDELRT 101 (296)
T ss_pred EEEEEEeCcCCchHHHHHHHHHHHHHhcCC-CEEEEecCCCCcHHHHHHHHHHHHHHHhCCCeeeeccc-CCCCHHHHHH
Confidence 456776666655555444333566777774 46668865421 111123333444 5668876532111 2458889999
Q ss_pred HHHHhHhcCCCEEEEecCchh
Q psy2427 99 ATKFVRSVQCDAFIAVGGGSV 119 (660)
Q Consensus 99 ~~~~~~~~~~D~IIavGGGsv 119 (660)
.+..+.+.|++-|++++|--.
T Consensus 102 ~L~~~~~~GI~niLaLrGD~p 122 (296)
T PRK09432 102 IAKDYWNNGIRHIVALRGDLP 122 (296)
T ss_pred HHHHHHHCCCCEEEEeCCCCC
Confidence 999999999999999999744
No 303
>TIGR00035 asp_race aspartate racemase.
Probab=48.59 E-value=48 Score=33.23 Aligned_cols=42 Identities=10% Similarity=0.130 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEE
Q psy2427 38 TREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE 82 (660)
Q Consensus 38 ~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~ 82 (660)
.+...+.++..|.+|+.|++.+...+.+ ...+.|++.|+++.
T Consensus 105 ~~~~~~~~~~~~~~~VgvLaT~~T~~s~---~y~~~l~~~g~~v~ 146 (229)
T TIGR00035 105 IEETAEAVKEDGVKKAGLLGTKGTMKDG---VYEREMKKHGIEIV 146 (229)
T ss_pred HHHHHHHHHHcCCCEEEEEecHHHHHhH---HHHHHHHHCCCEEE
Confidence 3444455666778999999887766653 35667777787654
No 304
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=48.56 E-value=2.3e+02 Score=29.85 Aligned_cols=75 Identities=12% Similarity=0.018 Sum_probs=42.1
Q ss_pred HHHHHHhc-CCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCC-----CHHHHHHHHHHhHhcCCCEEEEe
Q psy2427 41 VGMDMVNM-KAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEP-----TGDSFLEATKFVRSVQCDAFIAV 114 (660)
Q Consensus 41 l~~~l~~~-g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p-----~~~~v~~~~~~~~~~~~D~IIav 114 (660)
+-..+++. +..=.+++|+...... ....+...+-..+.++.. .....++ +...+.++.+.+++.++|+|+..
T Consensus 18 l~~~l~~~~~~~~~~~~tg~h~~~~-~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvV~~~ 95 (363)
T cd03786 18 LIRALKKDPGFELVLVVTGQHYDME-MGVTFFEILFIIKPDYDL-LLGSDSQSLGAQTAGLLIGLEAVLLEEKPDLVLVL 95 (363)
T ss_pred HHHHHhcCCCCCEEEEEeCCCCChh-hhHHHHHhhCCCCCCEEE-ecCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 44445544 5556778888775433 223444443222333322 1122222 24456777788888999999999
Q ss_pred cCc
Q psy2427 115 GGG 117 (660)
Q Consensus 115 GGG 117 (660)
|..
T Consensus 96 g~~ 98 (363)
T cd03786 96 GDT 98 (363)
T ss_pred CCc
Confidence 754
No 305
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=48.39 E-value=2.1e+02 Score=26.14 Aligned_cols=101 Identities=12% Similarity=0.064 Sum_probs=66.2
Q ss_pred EEECcChH---------HHHHHHH--HhcCCCEEEEEECccccc--cchHHHHHHHHHhCCCeEE-EEeCcccCCCHHHH
Q psy2427 31 IRIGPGVT---------REVGMDM--VNMKAQRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFE-LFDKVRVEPTGDSF 96 (660)
Q Consensus 31 i~~G~g~~---------~~l~~~l--~~~g~~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~-~~~~~~~~p~~~~v 96 (660)
|++|.+.. .++-.-+ -+.|....+|+++..... ..-.+...+.|.+.|+... ++-+....-|.+++
T Consensus 4 vVLG~~~~~~~~~~~~~~R~~~a~~l~~~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~~~~I~~e~~s~~T~ena 83 (150)
T cd06259 4 VVLGGGVNGDGPSPILAERLDAAAELYRAGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGVPAEAILLEDRSTNTYENA 83 (150)
T ss_pred EEeCCccCCCCCChHHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCCHHHeeecCCCCCHHHHH
Confidence 45666655 4543333 334546677777765432 2233667788888886432 33444556689999
Q ss_pred HHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhc
Q psy2427 97 LEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYC 131 (660)
Q Consensus 97 ~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~ 131 (660)
....+.+++.+..-|+-|--..=+-=|+.+.....
T Consensus 84 ~~~~~~~~~~~~~~i~lVTs~~H~~Ra~~~~~~~~ 118 (150)
T cd06259 84 RFSAELLRERGIRSVLLVTSAYHMPRALLIFRKAG 118 (150)
T ss_pred HHHHHHHHhcCCCeEEEECCHHHHHHHHHHHHHcC
Confidence 99999999999999999977777666666655543
No 306
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=48.26 E-value=57 Score=30.29 Aligned_cols=61 Identities=18% Similarity=0.281 Sum_probs=37.1
Q ss_pred CEEEEEECcccccc--chHHHHHHHHHhCCCe---EEEEeCcccCCCHHHHHHHH-HHhHhcCCCEEEEec
Q psy2427 51 QRVCVMTDPHLSKL--APVKATLDSLTRHGVK---FELFDKVRVEPTGDSFLEAT-KFVRSVQCDAFIAVG 115 (660)
Q Consensus 51 ~r~liVtd~~~~~~--~~~~~i~~~L~~~gi~---~~~~~~~~~~p~~~~v~~~~-~~~~~~~~D~IIavG 115 (660)
.|+.||..+.-... .+++-..+.|++.|+. +.++. -|..-++--++ +.++..++|.||++|
T Consensus 8 ~ri~IV~s~fn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~----VPGa~EiP~a~~~l~~s~~~DavIaLG 74 (141)
T PLN02404 8 LRFGVVVARFNEIITKNLLEGALETFKRYSVKEENIDVVW----VPGSFEIPVVAQRLAKSGKYDAILCIG 74 (141)
T ss_pred CEEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccceEEEE----cCcHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 58888877653221 2556677888888875 33332 34433333333 344556799999997
No 307
>PLN02884 6-phosphofructokinase
Probab=47.94 E-value=45 Score=36.73 Aligned_cols=52 Identities=10% Similarity=0.114 Sum_probs=42.0
Q ss_pred HHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC
Q psy2427 95 SFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS 165 (660)
Q Consensus 95 ~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~ 165 (660)
..+++++.++++++|.+|.|||-=.++.|..++...... ...+|+|.||=|.
T Consensus 131 ~~~~i~~~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~-------------------g~~i~vIGIPkTI 182 (411)
T PLN02884 131 KTSDIVDSIEARGINMLFVLGGNGTHAGANAIHNECRKR-------------------KMKVSVVGVPKTI 182 (411)
T ss_pred cHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHHHHc-------------------CCCceEEeccccc
Confidence 478899999999999999999999999998887543210 0018999999997
No 308
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=47.83 E-value=87 Score=31.31 Aligned_cols=88 Identities=13% Similarity=0.073 Sum_probs=48.7
Q ss_pred HHHHHHHHhcCCCEEEEEECcc-cc--ccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh--cCCCEEEE
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPH-LS--KLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS--VQCDAFIA 113 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~-~~--~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~IIa 113 (660)
..+.+++.+.|.+++.+++++. .. .....+-+.+.+++.++.+....-...+-+.+...+.+..+.+ .++|+|++
T Consensus 105 ~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~ 184 (268)
T cd06273 105 RLAARHLIALGHRRIAMIFGPTQGNDRARARRAGVRAALAEAGLELPELWQVEAPYSIADGRAALRQLLEQPPRPTAVIC 184 (268)
T ss_pred HHHHHHHHHCCCCeEEEEeccccCCccHHHHHHHHHHHHHHcCCCCCHHHeeeCCCcHHHHHHHHHHHHcCCCCCCEEEE
Confidence 4466777777989999998643 11 1122355677888877543211111112333333333333332 45899999
Q ss_pred ecCchhhhHHHHH
Q psy2427 114 VGGGSVIDTCKAA 126 (660)
Q Consensus 114 vGGGsviD~AK~~ 126 (660)
.++..+.=+.+++
T Consensus 185 ~~~~~a~~~~~~l 197 (268)
T cd06273 185 GNDVLALGALYEA 197 (268)
T ss_pred cChHHHHHHHHHH
Confidence 7666565555544
No 309
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=47.82 E-value=1.6e+02 Score=28.61 Aligned_cols=51 Identities=18% Similarity=0.136 Sum_probs=35.7
Q ss_pred hHHHHHHHHHh--CCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchh
Q psy2427 66 PVKATLDSLTR--HGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSV 119 (660)
Q Consensus 66 ~~~~i~~~L~~--~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 119 (660)
..+.+.+.+++ .++++.+++. ..+.+...+.++.+...++|.||+.+....
T Consensus 18 ~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~ 70 (269)
T cd01391 18 LLAGIELAAEEIGRGLEVILADS---QSDPERALEALRDLIQQGVDGIIGPPSSSS 70 (269)
T ss_pred HHHHHHHHHHHhCCceEEEEecC---CCCHHHHHHHHHHHHHcCCCEEEecCCCHH
Confidence 44666777777 7777776543 444467777777777779999998876543
No 310
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=47.74 E-value=1e+02 Score=33.12 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=45.6
Q ss_pred CcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC
Q psy2427 86 KVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS 165 (660)
Q Consensus 86 ~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~ 165 (660)
....-.+.+..+.+++.+++.+.|.+|-|||==....|+.++.... +|+|.||=|-
T Consensus 73 R~~~~~~~e~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~~------------------------i~vVGvPkTI 128 (347)
T COG0205 73 RFPEFKTEEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEGG------------------------IPVVGVPKTI 128 (347)
T ss_pred CCCCcccHHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHhcC------------------------CcEEecCCCc
Confidence 4445566778889999999999999999999777777777765443 8999999996
No 311
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=46.93 E-value=90 Score=31.16 Aligned_cols=89 Identities=13% Similarity=0.048 Sum_probs=49.6
Q ss_pred HHHHHHHHhcCCCEEEEEECccccc--cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG 116 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG 116 (660)
..+.+.+.+.|.+++.++.+..... .....-+.+.+++.++++........+.+.+...+.++.+.+.++|.|++.+.
T Consensus 105 ~~~~~~l~~~g~~~I~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~av~~~~d 184 (265)
T cd06299 105 TEAVSLLVALGHKKIGYISGPQDTSTGRERLEAFRQACASLGLEVNEDLVVLGGYSQESGYAGATKLLDQGATAIIAGDS 184 (265)
T ss_pred HHHHHHHHHcCCCcEEEEeCCCCcccHHHHHHHHHHHHHHCCCCCChHhEEecCcchHHHHHHHHHHHcCCCCEEEEcCc
Confidence 3455677777888999997654221 11224467778777754321100112233344444455544445999999877
Q ss_pred chhhhHHHHHH
Q psy2427 117 GSVIDTCKAAN 127 (660)
Q Consensus 117 GsviD~AK~~a 127 (660)
..++-+.+++.
T Consensus 185 ~~a~gv~~al~ 195 (265)
T cd06299 185 MMTIGAIRAIH 195 (265)
T ss_pred HHHHHHHHHHH
Confidence 66555555543
No 312
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=46.90 E-value=1e+02 Score=27.12 Aligned_cols=74 Identities=11% Similarity=0.096 Sum_probs=51.2
Q ss_pred HHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCC-CEEEEecCchh
Q psy2427 41 VGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQC-DAFIAVGGGSV 119 (660)
Q Consensus 41 l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~-D~IIavGGGsv 119 (660)
+...++..|. +++.+ +..+. .+++.+.+.+.+.++..+... .......+.++++.+++... +..|.+||.-.
T Consensus 19 ~~~~l~~~G~-~V~~l-g~~~~----~~~l~~~~~~~~pdvV~iS~~-~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~ 91 (119)
T cd02067 19 VARALRDAGF-EVIDL-GVDVP----PEEIVEAAKEEDADAIGLSGL-LTTHMTLMKEVIEELKEAGLDDIPVLVGGAIV 91 (119)
T ss_pred HHHHHHHCCC-EEEEC-CCCCC----HHHHHHHHHHcCCCEEEEecc-ccccHHHHHHHHHHHHHcCCCCCeEEEECCCC
Confidence 4456667774 55332 33321 267777777778887766543 45677899999999999888 88899999766
Q ss_pred hh
Q psy2427 120 ID 121 (660)
Q Consensus 120 iD 121 (660)
..
T Consensus 92 ~~ 93 (119)
T cd02067 92 TR 93 (119)
T ss_pred Ch
Confidence 55
No 313
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=46.81 E-value=47 Score=28.49 Aligned_cols=52 Identities=13% Similarity=0.215 Sum_probs=36.2
Q ss_pred EEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE
Q psy2427 52 RVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA 113 (660)
Q Consensus 52 r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa 113 (660)
|++++|+.++..+-..+++.+.+++.|+++.+. ..+...+.+ . ..++|+|+.
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~-----~~~~~~~~~---~--~~~~Diil~ 52 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGIDAEIE-----AVPESELEE---Y--IDDADVVLL 52 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCceEEE-----EecHHHHHH---h--cCCCCEEEE
Confidence 589999998766656799999999999987653 334444442 2 245787663
No 314
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=46.59 E-value=84 Score=30.78 Aligned_cols=84 Identities=18% Similarity=0.190 Sum_probs=49.1
Q ss_pred CcChHH---HHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCE
Q psy2427 34 GPGVTR---EVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDA 110 (660)
Q Consensus 34 G~g~~~---~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~ 110 (660)
|.|-.. +|+..++..| +|+.+|+-... +.+..++++.+-+..|+.+... ...+-+.+.+.++.+..++.++|.
T Consensus 11 GvGKTTt~aKLAa~~~~~~-~~v~lis~D~~-R~ga~eQL~~~a~~l~vp~~~~--~~~~~~~~~~~~~l~~~~~~~~D~ 86 (196)
T PF00448_consen 11 GVGKTTTIAKLAARLKLKG-KKVALISADTY-RIGAVEQLKTYAEILGVPFYVA--RTESDPAEIAREALEKFRKKGYDL 86 (196)
T ss_dssp TSSHHHHHHHHHHHHHHTT---EEEEEESTS-STHHHHHHHHHHHHHTEEEEES--STTSCHHHHHHHHHHHHHHTTSSE
T ss_pred CCchHhHHHHHHHHHhhcc-ccceeecCCCC-CccHHHHHHHHHHHhccccchh--hcchhhHHHHHHHHHHHhhcCCCE
Confidence 556544 4555566555 78888875443 3456688888888778775432 112234556677888888888886
Q ss_pred EE-EecCchhhh
Q psy2427 111 FI-AVGGGSVID 121 (660)
Q Consensus 111 II-avGGGsviD 121 (660)
|+ =--|-+.-|
T Consensus 87 vlIDT~Gr~~~d 98 (196)
T PF00448_consen 87 VLIDTAGRSPRD 98 (196)
T ss_dssp EEEEE-SSSSTH
T ss_pred EEEecCCcchhh
Confidence 65 333334434
No 315
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=46.58 E-value=2.3e+02 Score=26.68 Aligned_cols=92 Identities=12% Similarity=0.119 Sum_probs=53.8
Q ss_pred HHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhC-CCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchh
Q psy2427 41 VGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRH-GVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSV 119 (660)
Q Consensus 41 l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~-gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 119 (660)
+.+.|+++|.+.++-+.+.... .+.+.|.+. ++++..... +..-.-...+..++. ++-+++...|.-.
T Consensus 3 l~~~L~~~Gi~~vFg~pG~~~~------~l~~al~~~~~i~~i~~rh---E~~A~~mA~gyar~t--~~gv~~~t~GpG~ 71 (162)
T cd07038 3 LLERLKQLGVKHVFGVPGDYNL------PLLDAIEENPGLRWVGNCN---ELNAGYAADGYARVK--GLGALVTTYGVGE 71 (162)
T ss_pred HHHHHHHcCCCEEEEeCCccHH------HHHHHHhhcCCceEEeeCC---HHHHHHHHHHHHHhh--CCEEEEEcCCccH
Confidence 5677899999999999887643 344555433 677654321 222222222333333 5666666555555
Q ss_pred hhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC
Q psy2427 120 IDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS 165 (660)
Q Consensus 120 iD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~ 165 (660)
..+.-.++-.+.+. +|++.|....
T Consensus 72 ~n~~~gl~~A~~~~----------------------~Pvl~i~g~~ 95 (162)
T cd07038 72 LSALNGIAGAYAEH----------------------VPVVHIVGAP 95 (162)
T ss_pred HHHHHHHHHHHHcC----------------------CCEEEEecCC
Confidence 55555554444432 8999997664
No 316
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=46.50 E-value=1.5e+02 Score=29.59 Aligned_cols=87 Identities=13% Similarity=0.073 Sum_probs=46.6
Q ss_pred HHHHHHhc--CCCEEEEEECcccccc--chHHHHHHHHHhCCCeEEEEeCcccCCCHHHH-HHHHHHhHh--cCCCEEEE
Q psy2427 41 VGMDMVNM--KAQRVCVMTDPHLSKL--APVKATLDSLTRHGVKFELFDKVRVEPTGDSF-LEATKFVRS--VQCDAFIA 113 (660)
Q Consensus 41 l~~~l~~~--g~~r~liVtd~~~~~~--~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v-~~~~~~~~~--~~~D~IIa 113 (660)
+.+++.+. |.+|++++++...... ...+-+++.+++.|..+.+......+-+.+.. ..+.+.+.. .++|+|++
T Consensus 114 ~~~~l~~~~~g~~~i~~l~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~ 193 (275)
T cd06317 114 SAEAMCKALGGKGQIVVIAGQPGNGTAIERQKGFEDELAEVCPGVEVLDTQPADWDREKAQVAMEALITKFGDDIDGVYA 193 (275)
T ss_pred HHHHHHHHcCCCceEEEEecCCCCchHHHHHHHHHHHHHhhCCCCEEEeccCCCCCHHHHHHHHHHHHHhCCCCccEEEE
Confidence 44555554 7678999976432211 12344667787776443322222223333333 333334443 35799998
Q ss_pred ecCchhhhHHHHHH
Q psy2427 114 VGGGSVIDTCKAAN 127 (660)
Q Consensus 114 vGGGsviD~AK~~a 127 (660)
.+...+.-+.+++.
T Consensus 194 ~~d~~a~g~~~~l~ 207 (275)
T cd06317 194 GDDNMARGALNAAK 207 (275)
T ss_pred CCCcHHHHHHHHHH
Confidence 87777666666543
No 317
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=46.39 E-value=46 Score=39.61 Aligned_cols=58 Identities=17% Similarity=0.146 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcC
Q psy2427 93 GDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTG 168 (660)
Q Consensus 93 ~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtg 168 (660)
.+...++++.++++++|.+|.|||--.++.+..++....+ | ....+|+|.||=|...+
T Consensus 464 ~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~-------y-----------~~~~i~vVgIPkTIDND 521 (762)
T cd00764 464 KKDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQLREAREQ-------Y-----------EEFCIPMVLIPATVSNN 521 (762)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHhh-------C-----------CCCCccEEEecccccCC
Confidence 5789999999999999999999999888888766543211 1 11129999999997443
No 318
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=46.09 E-value=95 Score=32.36 Aligned_cols=77 Identities=16% Similarity=0.277 Sum_probs=53.7
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHh
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYY 130 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~ 130 (660)
+++.+|+-..... ..+..+.+.|++...++.+++. --+++.+.-+++.++++ ++|++|-|||-..-++.|++-...
T Consensus 157 ~kv~~vsQTT~~~-~~~~~iv~~l~~~~~~~~v~~T-IC~aT~~RQ~a~~~La~--~vD~miVVGg~~SsNT~rL~eia~ 232 (281)
T PRK12360 157 DKACVVAQTTIIP-ELWEDILNVIKLKSKELVFFNT-ICSATKKRQESAKELSK--EVDVMIVIGGKHSSNTQKLVKICE 232 (281)
T ss_pred cCEEEEECCCCcH-HHHHHHHHHHHHhCcccccCCC-cchhhhhHHHHHHHHHH--hCCEEEEecCCCCccHHHHHHHHH
Confidence 6777776655443 3458888888877666655433 24555555555566654 689999999999999999986655
Q ss_pred c
Q psy2427 131 C 131 (660)
Q Consensus 131 ~ 131 (660)
.
T Consensus 233 ~ 233 (281)
T PRK12360 233 K 233 (281)
T ss_pred H
Confidence 4
No 319
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=45.68 E-value=1.1e+02 Score=28.16 Aligned_cols=53 Identities=13% Similarity=0.103 Sum_probs=38.4
Q ss_pred HHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCC-CEEEEecCchhhh
Q psy2427 68 KATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQC-DAFIAVGGGSVID 121 (660)
Q Consensus 68 ~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~-D~IIavGGGsviD 121 (660)
+++.+...+.+.++...+.. ...+...+.+..+.+++.+. |..|.+||.-+.+
T Consensus 44 e~i~~~a~~~~~d~V~lS~~-~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~ 97 (137)
T PRK02261 44 EEFIDAAIETDADAILVSSL-YGHGEIDCRGLREKCIEAGLGDILLYVGGNLVVG 97 (137)
T ss_pred HHHHHHHHHcCCCEEEEcCc-cccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCC
Confidence 66777777777777655433 34678888888888888866 7778888876544
No 320
>PTZ00287 6-phosphofructokinase; Provisional
Probab=45.62 E-value=72 Score=40.27 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHh
Q psy2427 92 TGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYY 130 (660)
Q Consensus 92 ~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~ 130 (660)
+.+..+++++.+++.+.|.+|.|||--.+..|..++...
T Consensus 913 t~e~~~ka~~~lk~l~ID~LVvIGGDgS~t~A~~LaE~f 951 (1419)
T PTZ00287 913 DKENRNKVCETVTNLQLNGLVMPGSNVTITEAALLAEYF 951 (1419)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHH
Confidence 568899999999999999999999988887777776543
No 321
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=45.52 E-value=56 Score=29.67 Aligned_cols=59 Identities=22% Similarity=0.204 Sum_probs=40.3
Q ss_pred HHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch--hhhHHHHHHhH
Q psy2427 68 KATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS--VIDTCKAANLY 129 (660)
Q Consensus 68 ~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs--viD~AK~~a~~ 129 (660)
..+.+.|++.|+++..+.-+. -+.+.+.+.++.+.+ ++|.||..||-+ .-|..+-+-..
T Consensus 21 ~~l~~~l~~~G~~~~~~~~v~--Dd~~~I~~~l~~~~~-~~dliittGG~g~g~~D~t~~~l~~ 81 (135)
T smart00852 21 PALAELLTELGIEVTRYVIVP--DDKEAIKEALREALE-RADLVITTGGTGPGPDDVTPEAVAE 81 (135)
T ss_pred HHHHHHHHHCCCeEEEEEEeC--CCHHHHHHHHHHHHh-CCCEEEEcCCCCCCCCcCcHHHHHH
Confidence 567788889998876444332 456677777776665 599999999855 55666654433
No 322
>PRK06154 hypothetical protein; Provisional
Probab=45.36 E-value=71 Score=36.81 Aligned_cols=44 Identities=7% Similarity=-0.025 Sum_probs=32.2
Q ss_pred hHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEE
Q psy2427 37 VTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE 82 (660)
Q Consensus 37 ~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~ 82 (660)
.++++.+.|.+ .+|++|+.|......+..+.+.+..++.|+.+.
T Consensus 203 ~i~~aa~~L~~--A~rPvil~G~g~~~~~a~~~l~~lae~l~~PV~ 246 (565)
T PRK06154 203 EVVEAAALLLA--AERPVIYAGQGVLYAQATPELKELAELLEIPVM 246 (565)
T ss_pred HHHHHHHHHHh--CCCCEEEECCCccccChHHHHHHHHHHhCCCEE
Confidence 34555555543 489999999998766666788888888888766
No 323
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=45.34 E-value=78 Score=30.40 Aligned_cols=76 Identities=13% Similarity=0.132 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCCCEEEEEECccccc-cchHHHHHHHHHhCCCeEEEE-e--------CcccCCCHHHHHHHHHHhH----
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSK-LAPVKATLDSLTRHGVKFELF-D--------KVRVEPTGDSFLEATKFVR---- 104 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~-~~~~~~i~~~L~~~gi~~~~~-~--------~~~~~p~~~~v~~~~~~~~---- 104 (660)
+.+.+.|++ .+|++|+.|..++. ....+.+.+..++.++.+..- . ++.++ .-.+-++.....
T Consensus 25 ~~aa~lI~~--AKrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~~~~~~~~kgv~~~--~~~lg~lg~~~~~p~~ 100 (171)
T PRK00945 25 KIAAMMIKK--AKRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGGSYKGLIDKGVDAK--YINLHELTNYLKDPNW 100 (171)
T ss_pred HHHHHHHHh--CCCcEEEECcCccccchHHHHHHHHHHHHCCCEEEccccccccccCCccCC--cccHHHHHhhccCchh
Confidence 445555654 38999999988765 445677888888878876531 1 12222 222323333222
Q ss_pred -----hcCCCEEEEecCch
Q psy2427 105 -----SVQCDAFIAVGGGS 118 (660)
Q Consensus 105 -----~~~~D~IIavGGGs 118 (660)
+.++|.||-+|---
T Consensus 101 e~~~g~~~~DlvlfvG~~~ 119 (171)
T PRK00945 101 KGLDGNGNYDLVIFIGVTY 119 (171)
T ss_pred hhhcCCCCcCEEEEecCCc
Confidence 24789999997544
No 324
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=44.86 E-value=2.1e+02 Score=26.34 Aligned_cols=80 Identities=10% Similarity=0.090 Sum_probs=58.7
Q ss_pred CCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCc-------ccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhH
Q psy2427 50 AQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKV-------RVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDT 122 (660)
Q Consensus 50 ~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~-------~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~ 122 (660)
.||++|+.|+.-..- ..+.+.++..|-++. |... .+--++++=.++.+.+.+++..-+|.|=|++=-..
T Consensus 5 gkKviiiGdRDGiPg---pAie~c~~~~gaevv-fs~TeCFVctaagaMDLEnQ~rvk~~aEk~g~enlvVvlG~aeaE~ 80 (150)
T PF04723_consen 5 GKKVIIIGDRDGIPG---PAIEECVKTAGAEVV-FSSTECFVCTAAGAMDLENQQRVKDLAEKYGAENLVVVLGAAEAEA 80 (150)
T ss_pred CcEEEEEecCCCCCc---HHHHHHHHhcCceEE-EEeeeEEEecccccccHHHHHHHHHHHHhcCCccEEEEecCCChhh
Confidence 489999999874433 567777887786654 3322 23456889999999999999976666666777788
Q ss_pred HHHHHhHhcCC
Q psy2427 123 CKAANLYYCDP 133 (660)
Q Consensus 123 AK~~a~~~~~~ 133 (660)
+.+.|.+..++
T Consensus 81 a~laAETVt~G 91 (150)
T PF04723_consen 81 AGLAAETVTNG 91 (150)
T ss_pred hhhhhhhhccC
Confidence 88888887765
No 325
>PRK01217 hypothetical protein; Provisional
Probab=44.74 E-value=12 Score=33.48 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHHhHhcCCCEEEEe
Q psy2427 90 EPTGDSFLEATKFVRSVQCDAFIAV 114 (660)
Q Consensus 90 ~p~~~~v~~~~~~~~~~~~D~IIav 114 (660)
+...+.++++.+.+++.++|.||+|
T Consensus 63 ~aR~eA~~rm~~~A~~lGAnAVVgv 87 (114)
T PRK01217 63 QARNQALERMIDHAKELGANAVINV 87 (114)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 4557789999999999999999998
No 326
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=44.73 E-value=97 Score=30.90 Aligned_cols=74 Identities=11% Similarity=0.087 Sum_probs=51.5
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCC
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPI 145 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~ 145 (660)
..+-+.+.+++.|+++.++ ...+.+.+.-.+.++.+...++|.||-. ....-.+...+......+
T Consensus 16 ~~~g~~~~a~~~g~~~~~~--~~~~~d~~~q~~~i~~~i~~~~d~Iiv~-~~~~~~~~~~l~~~~~~g------------ 80 (257)
T PF13407_consen 16 VIKGAKAAAKELGYEVEIV--FDAQNDPEEQIEQIEQAISQGVDGIIVS-PVDPDSLAPFLEKAKAAG------------ 80 (257)
T ss_dssp HHHHHHHHHHHHTCEEEEE--EESTTTHHHHHHHHHHHHHTTESEEEEE-SSSTTTTHHHHHHHHHTT------------
T ss_pred HHHHHHHHHHHcCCEEEEe--CCCCCCHHHHHHHHHHHHHhcCCEEEec-CCCHHHHHHHHHHHhhcC------------
Confidence 4466778888889998874 3346777888888999989999999944 333333445554444433
Q ss_pred CCCCCCCCCCCcEEEEcCC
Q psy2427 146 GKGKPVTVPLKPLIAIPTT 164 (660)
Q Consensus 146 ~~~~~~~~~~lP~i~IPTt 164 (660)
+|+|.+=+.
T Consensus 81 ----------Ipvv~~d~~ 89 (257)
T PF13407_consen 81 ----------IPVVTVDSD 89 (257)
T ss_dssp ----------SEEEEESST
T ss_pred ----------ceEEEEecc
Confidence 899987665
No 327
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=44.69 E-value=92 Score=31.06 Aligned_cols=89 Identities=12% Similarity=0.089 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCCCEEEEEECccccc--cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhH-h-cCCCEEEEe
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVR-S-VQCDAFIAV 114 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~-~-~~~D~IIav 114 (660)
..+.+++.+.|.+|++++.+..-.. ....+-+.+.+++.+++.....-+..+.+.+...+.++.+. . .++|+|++.
T Consensus 106 ~~~~~~l~~~g~~~i~~l~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 185 (268)
T cd06289 106 RLATEHLISLGHRRIAFIGGLEDSSTRRERLAGYRAALAEAGLPFDSELVVEGPPSRQGGAEAVAQLLDLPPRPTAIVCF 185 (268)
T ss_pred HHHHHHHHHCCCCCEEEecCCccccchHHHHHHHHHHHHHcCCCCCchhEEecCcchhhHHHHHHHHHcCCCCCCEEEEc
Confidence 4456677777888999987643211 11234566777777743211000111223333334444333 2 357999999
Q ss_pred cCchhhhHHHHHH
Q psy2427 115 GGGSVIDTCKAAN 127 (660)
Q Consensus 115 GGGsviD~AK~~a 127 (660)
++..++-+.+++.
T Consensus 186 ~~~~a~~~~~al~ 198 (268)
T cd06289 186 NDLVAFGAMSGLR 198 (268)
T ss_pred CcHHHHHHHHHHH
Confidence 8887766666664
No 328
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=44.59 E-value=51 Score=37.21 Aligned_cols=82 Identities=17% Similarity=0.206 Sum_probs=49.0
Q ss_pred ChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHH-hCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEe
Q psy2427 36 GVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLT-RHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAV 114 (660)
Q Consensus 36 g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~-~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIav 114 (660)
.++....+.+..++..++.+|....+++..-.+++....+ ..|+++.+.++-+ +.. -...-+...+...+--+++=|
T Consensus 59 ~aL~~f~e~~~~~~~~~v~~vATsA~R~A~N~~eFl~rv~~~~G~~ievIsGee-EAr-l~~lGv~~~~~~~~~~lv~DI 136 (492)
T COG0248 59 SALKRFAELLDGFGAEEVRVVATSALRDAPNGDEFLARVEKELGLPIEVISGEE-EAR-LIYLGVASTLPRKGDGLVIDI 136 (492)
T ss_pred HHHHHHHHHHhhCCCCEEEEehhHHHHcCCCHHHHHHHHHHHhCCceEEeccHH-HHH-HHHHHHHhcCCCCCCEEEEEe
Confidence 4566677777888999999999887776543344444433 3488888876522 111 111122222222233488999
Q ss_pred cCchh
Q psy2427 115 GGGSV 119 (660)
Q Consensus 115 GGGsv 119 (660)
||||.
T Consensus 137 GGGSt 141 (492)
T COG0248 137 GGGST 141 (492)
T ss_pred cCCeE
Confidence 99985
No 329
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=44.57 E-value=42 Score=34.99 Aligned_cols=58 Identities=16% Similarity=0.161 Sum_probs=38.8
Q ss_pred hHHHHHHHHHhCCCeE--EEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHH
Q psy2427 66 PVKATLDSLTRHGVKF--ELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTC 123 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~--~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~A 123 (660)
..+-+++.|++.|+.. ..|.....+-+.+.+.++++.+...++|+||++|.-...-+.
T Consensus 16 ~~~gf~~~L~~~g~~~~~~~~~~~~a~~d~~~~~~~~~~l~~~~~DlIi~~gt~aa~~~~ 75 (294)
T PF04392_consen 16 IVRGFKDGLKELGYDEKNVEIEYKNAEGDPEKLRQIARKLKAQKPDLIIAIGTPAAQALA 75 (294)
T ss_dssp HHHHHHHHHHHTT--CCCEEEEEEE-TT-HHHHHHHHHHHCCTS-SEEEEESHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccccEEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeCcHHHHHHH
Confidence 3466888888888753 233334457778999999999999999999999865543333
No 330
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=44.53 E-value=88 Score=33.10 Aligned_cols=85 Identities=18% Similarity=0.136 Sum_probs=53.3
Q ss_pred eEEECcChHHH-HHHHHHhcCCCEEEEEECccc---ccc-chHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhH
Q psy2427 30 TIRIGPGVTRE-VGMDMVNMKAQRVCVMTDPHL---SKL-APVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVR 104 (660)
Q Consensus 30 ~i~~G~g~~~~-l~~~l~~~g~~r~liVtd~~~---~~~-~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~ 104 (660)
-++||.+.+.. .-+.|.+.|.+-+.|||.+.- +.. .....+.+...+.|+.+....... .+ +..+.++
T Consensus 3 Ivf~Gs~~~a~~~L~~L~~~~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~~~----~~---~~~~~l~ 75 (313)
T TIGR00460 3 IVFFGTPTFSLPVLEELREDNFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEKQR----QL---EELPLVR 75 (313)
T ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCCCC----cH---HHHHHHH
Confidence 35689887643 444455556667788886531 111 112457777778899876443321 11 4466788
Q ss_pred hcCCCEEEEecCchhhh
Q psy2427 105 SVQCDAFIAVGGGSVID 121 (660)
Q Consensus 105 ~~~~D~IIavGGGsviD 121 (660)
+.++|.+|.++=|..+.
T Consensus 76 ~~~~Dliv~~~~~~iip 92 (313)
T TIGR00460 76 ELKPDVIVVVSFGKILP 92 (313)
T ss_pred hhCCCEEEEccchhhCC
Confidence 88999999999877654
No 331
>PRK03732 hypothetical protein; Provisional
Probab=44.26 E-value=12 Score=33.29 Aligned_cols=25 Identities=8% Similarity=0.222 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHHhHhcCCCEEEEe
Q psy2427 90 EPTGDSFLEATKFVRSVQCDAFIAV 114 (660)
Q Consensus 90 ~p~~~~v~~~~~~~~~~~~D~IIav 114 (660)
+...+.++++.+.+++.++|.||+|
T Consensus 63 ~aR~~A~~rm~~~A~~lGAnAVVgv 87 (114)
T PRK03732 63 EAREEALRRMALHAKELGANAVVNF 87 (114)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 4567889999999999999999976
No 332
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=44.13 E-value=1.2e+02 Score=30.16 Aligned_cols=87 Identities=18% Similarity=0.265 Sum_probs=51.9
Q ss_pred HHHHHHHHhcCCCEEEEEECccc-cc--cchHHHHHHHHHhCCCeE--EEEeCcccCCCHHHHHHHHHHhHhc--CCCEE
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHL-SK--LAPVKATLDSLTRHGVKF--ELFDKVRVEPTGDSFLEATKFVRSV--QCDAF 111 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~-~~--~~~~~~i~~~L~~~gi~~--~~~~~~~~~p~~~~v~~~~~~~~~~--~~D~I 111 (660)
..+.++|.+.|.+++.+++++.. .. ....+-+++.+++.++.. .+.. ..+.+.+...+.++.+.+. ++|+|
T Consensus 105 ~~~~~~l~~~g~~~i~~l~~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ai 182 (267)
T cd06283 105 KEAVDHLIEKGYERILFVTEPLDEISPRMERYEGFKEALAEHGIGVNEELIE--IDDEDADELDERLRQLLNKPKKKTAI 182 (267)
T ss_pred HHHHHHHHHcCCCcEEEEecCccccccHHHHHHHHHHHHHHcCCCCCcceeE--ecccchHHHHHHHHHHHcCCCCCCEE
Confidence 44677778889899999986542 11 123345677787777432 2111 1233344555555554433 47999
Q ss_pred EEecCchhhhHHHHHH
Q psy2427 112 IAVGGGSVIDTCKAAN 127 (660)
Q Consensus 112 IavGGGsviD~AK~~a 127 (660)
++-+...+..+.+++.
T Consensus 183 ~~~~d~~a~g~~~~l~ 198 (267)
T cd06283 183 FAANGLILLEVLKALK 198 (267)
T ss_pred EEcCcHHHHHHHHHHH
Confidence 9998777776666553
No 333
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=43.72 E-value=1.8e+02 Score=27.77 Aligned_cols=82 Identities=16% Similarity=0.182 Sum_probs=50.6
Q ss_pred EE-CcChHHH-HHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc--C
Q psy2427 32 RI-GPGVTRE-VGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV--Q 107 (660)
Q Consensus 32 ~~-G~g~~~~-l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~--~ 107 (660)
+. |.|.+.. +.++|...+.++++++..+..... ...+..+.|++.|..+..+.- .-.+.+.+.++.+.+++. .
T Consensus 5 itGG~gglg~~la~~La~~~~~~~il~~r~~~~~~-~~~~~i~~l~~~g~~v~~~~~--Dv~d~~~v~~~~~~~~~~~~~ 81 (181)
T PF08659_consen 5 ITGGLGGLGQSLARWLAERGARRLILLGRSGAPSA-EAEAAIRELESAGARVEYVQC--DVTDPEAVAAALAQLRQRFGP 81 (181)
T ss_dssp EETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGST-THHHHHHHHHHTT-EEEEEE----TTSHHHHHHHHHTSHTTSS-
T ss_pred EECCccHHHHHHHHHHHHcCCCEEEEeccCCCccH-HHHHHHHHHHhCCCceeeecc--CccCHHHHHHHHHHHHhccCC
Confidence 44 4666644 888888888777777766632222 336788889888888775432 145688899998888764 3
Q ss_pred CCEEEEecC
Q psy2427 108 CDAFIAVGG 116 (660)
Q Consensus 108 ~D~IIavGG 116 (660)
++.||=..|
T Consensus 82 i~gVih~ag 90 (181)
T PF08659_consen 82 IDGVIHAAG 90 (181)
T ss_dssp EEEEEE---
T ss_pred cceeeeeee
Confidence 466665544
No 334
>PRK12856 hypothetical protein; Provisional
Probab=43.66 E-value=12 Score=32.69 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHHhHhcCCCEEEEe
Q psy2427 90 EPTGDSFLEATKFVRSVQCDAFIAV 114 (660)
Q Consensus 90 ~p~~~~v~~~~~~~~~~~~D~IIav 114 (660)
+...+.++++.+.+++.++|.||+|
T Consensus 56 ~aR~~A~~rm~~~A~~lGAnAVvgv 80 (103)
T PRK12856 56 EARDIAMDEMKELAKQKGANAIVGV 80 (103)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 4557788999999999999999997
No 335
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=43.63 E-value=1.4e+02 Score=29.56 Aligned_cols=88 Identities=17% Similarity=0.135 Sum_probs=51.6
Q ss_pred HHHHHHHHhcCCCEEEEEECcccccc--chHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHH-hHh-cCCCEEEEe
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKL--APVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKF-VRS-VQCDAFIAV 114 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~--~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~-~~~-~~~D~IIav 114 (660)
..+.+++.+.|.+|+.++++..-... ...+-+.+.+++.++++.. .....-+.+...+.++. +++ .++|+|++.
T Consensus 104 ~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 181 (266)
T cd06278 104 RLAAELLLAKGCRRIAFIGGPADTSTSRERERGFRDALAAAGVPVVV--EEAGDYSYEGGYEAARRLLASRPRPDAIFCA 181 (266)
T ss_pred HHHHHHHHHCCCceEEEEcCCCcccchHHHHHHHHHHHHHcCCChhh--hccCCCCHHHHHHHHHHHHhcCCCCCEEEEc
Confidence 34667777778899999986532211 1224466777777776321 11122234444443333 333 257999999
Q ss_pred cCchhhhHHHHHHh
Q psy2427 115 GGGSVIDTCKAANL 128 (660)
Q Consensus 115 GGGsviD~AK~~a~ 128 (660)
++..+.-+.+++..
T Consensus 182 ~~~~a~~~~~~l~~ 195 (266)
T cd06278 182 NDLLAIGVMDAARQ 195 (266)
T ss_pred CcHHHHHHHHHHHH
Confidence 88887766666643
No 336
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=43.56 E-value=81 Score=34.07 Aligned_cols=75 Identities=9% Similarity=0.090 Sum_probs=56.5
Q ss_pred HHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEec
Q psy2427 38 TREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVG 115 (660)
Q Consensus 38 ~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavG 115 (660)
...+.+.+..+|-+++.+|++.. .....++.+.+.+++.++.+.... +. .++.++....++.++..+.+.||--.
T Consensus 105 ~~Ai~diI~~~~W~~v~iIYd~d-~g~~~lq~l~~~~~~~~~~I~~~~-~~-~~~~~d~~~~L~~ik~~~~rvIVl~~ 179 (364)
T cd06390 105 QDALISVIEHYKWQKFVYIYDAD-RGLSVLQKVLDTAAEKNWQVTAVN-IL-TTTEEGYRKLFQDLDKKKERLIVVDC 179 (364)
T ss_pred HHHHHHHHHHcCCcEEEEEEeCC-ccHHHHHHHHHhhhccCceeeEEE-ee-cCChHHHHHHHHhccccCCeEEEEEC
Confidence 45577888889999999999866 555566888899998887765322 22 24456788888888888888888875
No 337
>PRK06988 putative formyltransferase; Provisional
Probab=43.43 E-value=91 Score=32.98 Aligned_cols=85 Identities=11% Similarity=-0.015 Sum_probs=52.5
Q ss_pred eEEECcChHHH-HHHHHHhcCCCEEEEEECccc-cccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 30 TIRIGPGVTRE-VGMDMVNMKAQRVCVMTDPHL-SKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 30 ~i~~G~g~~~~-l~~~l~~~g~~r~liVtd~~~-~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
-++||.+.+.. .-+.|.+.|..-++|||.+.- ........+.+...+.|+.+..... ... .+..+.+++.+
T Consensus 5 Ivf~Gs~~~a~~~L~~L~~~~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~~~~~----~~~---~~~~~~l~~~~ 77 (312)
T PRK06988 5 AVVFAYHNVGVRCLQVLLARGVDVALVVTHEDNPTENIWFGSVAAVAAEHGIPVITPAD----PND---PELRAAVAAAA 77 (312)
T ss_pred EEEEeCcHHHHHHHHHHHhCCCCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcEEcccc----CCC---HHHHHHHHhcC
Confidence 45688887543 344444456566677876421 1111224677777888998753222 111 23466788999
Q ss_pred CCEEEEecCchhhh
Q psy2427 108 CDAFIAVGGGSVID 121 (660)
Q Consensus 108 ~D~IIavGGGsviD 121 (660)
+|.||.++-|..+-
T Consensus 78 ~Dliv~~~~~~iip 91 (312)
T PRK06988 78 PDFIFSFYYRHMIP 91 (312)
T ss_pred CCEEEEehhccccC
Confidence 99999999887663
No 338
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=43.26 E-value=1.1e+02 Score=30.45 Aligned_cols=89 Identities=15% Similarity=0.090 Sum_probs=48.7
Q ss_pred HHHHHHHHhcCCCEEEEEECccccc--cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh--cCCCEEEEe
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS--VQCDAFIAV 114 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~IIav 114 (660)
.++.++|.+.|.+++.++++..-.. ....+-+.+.+.+.++.+.....+..+-+.+...+..+.+.+ .++|+||+.
T Consensus 104 ~~~~~~l~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~aii~~ 183 (265)
T cd06290 104 YLATQHLIDLGHRRIAHITGPRGHIDARDRLAGYRKALEEAGLEVQPDLIVQGDFEEESGLEAVEELLQRGPDFTAIFAA 183 (265)
T ss_pred HHHHHHHHHCCCCeEEEEeCccccchhhHHHHHHHHHHHHcCCCCCHHHEEecCCCHHHHHHHHHHHHcCCCCCCEEEEc
Confidence 4466677777989999997653211 112244566777767653210001112233333333343332 347999998
Q ss_pred cCchhhhHHHHHH
Q psy2427 115 GGGSVIDTCKAAN 127 (660)
Q Consensus 115 GGGsviD~AK~~a 127 (660)
++..++-+.+++.
T Consensus 184 ~~~~a~~~~~~l~ 196 (265)
T cd06290 184 NDQTAYGARLALY 196 (265)
T ss_pred CcHHHHHHHHHHH
Confidence 7777666666554
No 339
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=43.14 E-value=1.3e+02 Score=31.76 Aligned_cols=77 Identities=14% Similarity=0.117 Sum_probs=54.1
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEE--EeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHh
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFEL--FDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANL 128 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~--~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~ 128 (660)
+++.+|+-..... ..++++.+.|++...++.+ |+ .--+.|.+.-+++.++++ .+|++|-|||=..-++.|++-.
T Consensus 156 ~~v~vvsQTT~~~-~~~~~i~~~l~~~~~~~~v~~~n-TIC~aT~~RQ~a~~~La~--~vD~miVVGg~~SsNT~kL~~i 231 (298)
T PRK01045 156 DKLALVTQTTLSV-DDTAEIIAALKERFPEIQGPPKD-DICYATQNRQEAVKELAP--QADLVIVVGSKNSSNSNRLREV 231 (298)
T ss_pred CcEEEEEcCCCcH-HHHHHHHHHHHHhCcCcccCCCC-CcchhhHHHHHHHHHHHh--hCCEEEEECCCCCccHHHHHHH
Confidence 6777777555433 3558888888876555544 43 234566666666666666 6899999999999999999866
Q ss_pred Hhc
Q psy2427 129 YYC 131 (660)
Q Consensus 129 ~~~ 131 (660)
...
T Consensus 232 ~~~ 234 (298)
T PRK01045 232 AEE 234 (298)
T ss_pred HHH
Confidence 554
No 340
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=43.08 E-value=92 Score=27.24 Aligned_cols=72 Identities=14% Similarity=0.115 Sum_probs=44.2
Q ss_pred EEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC--chhhhHHHHHHhH
Q psy2427 52 RVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG--GSVIDTCKAANLY 129 (660)
Q Consensus 52 r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG--GsviD~AK~~a~~ 129 (660)
|+++.+-+.-...-....+...|++.|.++..++. +.+. +++.+.+++.++|. |++.. +...+.++-++..
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~---~~~~---~~l~~~~~~~~pd~-V~iS~~~~~~~~~~~~l~~~ 74 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDA---NVPP---EELVEALRAERPDV-VGISVSMTPNLPEAKRLARA 74 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEES---SB-H---HHHHHHHHHTTCSE-EEEEESSSTHHHHHHHHHHH
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECC---CCCH---HHHHHHHhcCCCcE-EEEEccCcCcHHHHHHHHHH
Confidence 45666655433222447899999999999987754 2222 77778888889997 55543 4344444444333
Q ss_pred h
Q psy2427 130 Y 130 (660)
Q Consensus 130 ~ 130 (660)
.
T Consensus 75 ~ 75 (121)
T PF02310_consen 75 I 75 (121)
T ss_dssp H
T ss_pred H
Confidence 3
No 341
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=43.06 E-value=50 Score=34.64 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=12.5
Q ss_pred HHHHHHHHhHhcCCCEEEEec
Q psy2427 95 SFLEATKFVRSVQCDAFIAVG 115 (660)
Q Consensus 95 ~v~~~~~~~~~~~~D~IIavG 115 (660)
.-...-...++.++|.+|+|.
T Consensus 119 ~~~~~~~~~~~~~~d~lIaIE 139 (291)
T PF14336_consen 119 AFLEADGLLKEPRPDLLIAIE 139 (291)
T ss_pred hHHHHhhccccCCCCEEEEeC
Confidence 333444455566777888775
No 342
>PRK04155 chaperone protein HchA; Provisional
Probab=43.03 E-value=1.6e+02 Score=30.90 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=13.8
Q ss_pred hcCCCEEEEecC-chhhhH
Q psy2427 105 SVQCDAFIAVGG-GSVIDT 122 (660)
Q Consensus 105 ~~~~D~IIavGG-GsviD~ 122 (660)
..+.|+|+=-|| |...|+
T Consensus 145 ~~dYDaV~iPGG~g~~~dL 163 (287)
T PRK04155 145 DSDYAAVFIPGGHGALIGL 163 (287)
T ss_pred cccccEEEECCCCchHHHH
Confidence 356799999999 666765
No 343
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=42.99 E-value=1.1e+02 Score=30.46 Aligned_cols=87 Identities=7% Similarity=-0.000 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCCCEEEEEECcc--c-cccchHHHHHHHHHhCCCeEEEEeCcccCCCHH-HHHHHHHHhHhc-CCCEEEE
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPH--L-SKLAPVKATLDSLTRHGVKFELFDKVRVEPTGD-SFLEATKFVRSV-QCDAFIA 113 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~--~-~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~-~v~~~~~~~~~~-~~D~IIa 113 (660)
..+.+++.+.|.+|+.++++.. . ......+-+.+.+++.|+++.... ....+.. ..+.+.+.+++. ++|+|++
T Consensus 105 ~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ai~~ 182 (266)
T cd06282 105 RDVAQALAALGHRRIAMLAGRLAASDRARQRYAGYRAAMRAAGLAPLPPV--EIPFNTAALPSALLALLTAHPAPTAIFC 182 (266)
T ss_pred HHHHHHHHHcCcccEEEeccccccCchHHHHHHHHHHHHHHcCCCCCccc--cCCCcHHHHHHHHHHHhcCCCCCCEEEE
Confidence 4466777778989999997542 1 111233556778888887543211 1122223 333444444443 5799999
Q ss_pred ecCchhhhHHHHHH
Q psy2427 114 VGGGSVIDTCKAAN 127 (660)
Q Consensus 114 vGGGsviD~AK~~a 127 (660)
.+...++-+.+++.
T Consensus 183 ~~d~~a~g~~~al~ 196 (266)
T cd06282 183 SNDLLALAVIRALR 196 (266)
T ss_pred CCcHHHHHHHHHHH
Confidence 77665555555543
No 344
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=42.85 E-value=62 Score=30.14 Aligned_cols=61 Identities=28% Similarity=0.454 Sum_probs=37.7
Q ss_pred CEEEEEECcccccc--chHHHHHHHHHhCCC---eEEEEeCcccCCC-HHHHHHHHHHhHhcCCCEEEEec
Q psy2427 51 QRVCVMTDPHLSKL--APVKATLDSLTRHGV---KFELFDKVRVEPT-GDSFLEATKFVRSVQCDAFIAVG 115 (660)
Q Consensus 51 ~r~liVtd~~~~~~--~~~~~i~~~L~~~gi---~~~~~~~~~~~p~-~~~v~~~~~~~~~~~~D~IIavG 115 (660)
-|+.||..+.-... ..++...+.|++.|+ .+.+|.- |. .|--..+-..++..++|.||++|
T Consensus 4 ~ri~IV~s~~n~~i~~~ll~~a~~~l~~~g~~~~~i~~~~V----PGa~ElP~a~~~l~~~~~~Davi~lG 70 (144)
T PF00885_consen 4 LRIAIVVSRFNEEITDRLLEGALEELKRHGVAEENIEVIRV----PGAFELPLAAKRLAESGRYDAVIALG 70 (144)
T ss_dssp EEEEEEEESTTHHHHHHHHHHHHHHHHHTTTTGGCEEEEEE----SSGGGHHHHHHHHHHCSTESEEEEEE
T ss_pred CEEEEEEEeccHHHHHHHHHHHHHHHHHcCCCccceEEEEc----CCHHHHHHHHHHHhcccCccEEEEec
Confidence 47778776653221 255778888999988 5565542 22 23223333344556799999999
No 345
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=42.83 E-value=2.2e+02 Score=29.18 Aligned_cols=47 Identities=6% Similarity=0.035 Sum_probs=33.6
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEec
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVG 115 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavG 115 (660)
..+.+.+.+++.|+.+.+++. ..+.+.-.+..+.+...++|.||-.+
T Consensus 44 ~~~~i~~~~~~~G~~~~~~~~---~~d~~~~~~~~~~l~~~~~dgiii~~ 90 (295)
T PRK10653 44 LKDGAQKEADKLGYNLVVLDS---QNNPAKELANVQDLTVRGTKILLINP 90 (295)
T ss_pred HHHHHHHHHHHcCCeEEEecC---CCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 456677888889999887643 22345556777778888999888544
No 346
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=42.83 E-value=78 Score=36.32 Aligned_cols=75 Identities=13% Similarity=0.189 Sum_probs=46.6
Q ss_pred hHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEe-C---cc-cCCCHHHHHHHHHHhHhcCCCEE
Q psy2427 37 VTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFD-K---VR-VEPTGDSFLEATKFVRSVQCDAF 111 (660)
Q Consensus 37 ~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~-~---~~-~~p~~~~v~~~~~~~~~~~~D~I 111 (660)
.++++.+.|.+ .+|++|+.|..+...+..+++.+..+..|+.+..-. + +. .+|-. +-.....+. .++|+|
T Consensus 195 ~~~~~~~~L~~--AkrPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~p~~hp~~--~g~~~~~~~-~~aDlv 269 (554)
T TIGR03254 195 SVDRAVELLKD--AKRPLILLGKGAAYAQADEEIREFVEKTGIPFLPMSMAKGLLPDTHPQS--AAAARSFAL-AEADVV 269 (554)
T ss_pred HHHHHHHHHHh--CCCCEEEECCCccccChHHHHHHHHHHHCCCEEEcCCcceeCCCCCchh--hhHHHHHHH-hcCCEE
Confidence 44555555544 489999999998766666888888888898876422 1 11 12221 112222222 268999
Q ss_pred EEecC
Q psy2427 112 IAVGG 116 (660)
Q Consensus 112 IavGG 116 (660)
|+||.
T Consensus 270 l~lG~ 274 (554)
T TIGR03254 270 MLVGA 274 (554)
T ss_pred EEECC
Confidence 99993
No 347
>PRK05858 hypothetical protein; Provisional
Probab=42.72 E-value=72 Score=36.52 Aligned_cols=76 Identities=17% Similarity=0.088 Sum_probs=45.9
Q ss_pred ChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEE-EeCc----ccCCCHHHHHHHHHHhHhcCCCE
Q psy2427 36 GVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFEL-FDKV----RVEPTGDSFLEATKFVRSVQCDA 110 (660)
Q Consensus 36 g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~-~~~~----~~~p~~~~v~~~~~~~~~~~~D~ 110 (660)
..++++.+.|.+ .+|++||.|......+..+.+.+..++.|+.+.. +.+- +.+|.. +......+.+ ++|+
T Consensus 191 ~~i~~~~~~L~~--AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~tt~~~kg~~~~~hpl~--~~~~~~~~l~-~aD~ 265 (542)
T PRK05858 191 DALARAAGLLAE--AQRPVIMAGTDVWWGHAEAALLRLAEELGIPVLMNGMGRGVVPADHPLA--FSRARGKALG-EADV 265 (542)
T ss_pred HHHHHHHHHHHh--CCCcEEEECCCccccChHHHHHHHHHHhCCCEEEcCCcCCCCCCCCchh--hhHHHHHHHH-hCCE
Confidence 345666665554 4899999998876555557777777778887662 2211 112222 2222222222 7899
Q ss_pred EEEecC
Q psy2427 111 FIAVGG 116 (660)
Q Consensus 111 IIavGG 116 (660)
||+||-
T Consensus 266 vl~vG~ 271 (542)
T PRK05858 266 VLVVGV 271 (542)
T ss_pred EEEECC
Confidence 999995
No 348
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=42.18 E-value=1.9e+02 Score=28.96 Aligned_cols=49 Identities=16% Similarity=0.160 Sum_probs=37.1
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
..+-+.+.+++.|+.+.++.. .-+.+...+..+.+.+.++|.||.+++.
T Consensus 17 ~~~~i~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgii~~~~~ 65 (269)
T cd06281 17 LFSGAEDRLRAAGYSLLIANS---LNDPERELEILRSFEQRRMDGIIIAPGD 65 (269)
T ss_pred HHHHHHHHHHHcCCEEEEEeC---CCChHHHHHHHHHHHHcCCCEEEEecCC
Confidence 456778888888999876643 3345667778888888899999998753
No 349
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=42.06 E-value=91 Score=32.89 Aligned_cols=84 Identities=15% Similarity=0.169 Sum_probs=51.4
Q ss_pred eEEECcChHHH-HHHHHHhcCCCEEEEEECcccc---cc-chHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhH
Q psy2427 30 TIRIGPGVTRE-VGMDMVNMKAQRVCVMTDPHLS---KL-APVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVR 104 (660)
Q Consensus 30 ~i~~G~g~~~~-l~~~l~~~g~~r~liVtd~~~~---~~-~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~ 104 (660)
-++||.+.+.. .-+.|.+.+.+-+.|||.+.-. .. -....+.+..++.|+.+.....+. + .+..+.++
T Consensus 3 Ivf~G~~~~a~~~L~~L~~~~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~~~~~~---~----~~~~~~l~ 75 (309)
T PRK00005 3 IVFMGTPEFAVPSLKALLESGHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQPEKLR---D----PEFLAELA 75 (309)
T ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEECcCCCC---C----HHHHHHHH
Confidence 35689886643 4444544466677788754311 10 012457777888899875332221 1 23456788
Q ss_pred hcCCCEEEEecCchhh
Q psy2427 105 SVQCDAFIAVGGGSVI 120 (660)
Q Consensus 105 ~~~~D~IIavGGGsvi 120 (660)
+.++|.+|.+|=|..+
T Consensus 76 ~~~~Dliv~~~~~~ii 91 (309)
T PRK00005 76 ALNADVIVVVAYGQIL 91 (309)
T ss_pred hcCcCEEEEehhhccc
Confidence 8899999999987654
No 350
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=42.04 E-value=84 Score=36.21 Aligned_cols=76 Identities=12% Similarity=0.164 Sum_probs=47.4
Q ss_pred ChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEe-C---cc-cCCCHHHHHHHHHHhHhcCCCE
Q psy2427 36 GVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFD-K---VR-VEPTGDSFLEATKFVRSVQCDA 110 (660)
Q Consensus 36 g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~-~---~~-~~p~~~~v~~~~~~~~~~~~D~ 110 (660)
..++++.+.|.+ .+|++|+.|......+..+.+.+..++.++.+..-. + +. .+|-.-. .....+. .++|+
T Consensus 201 ~~l~~~~~~L~~--AkrPvIi~G~g~~~~~a~~~l~~lae~l~iPV~tt~~gkg~~~e~hpl~~G--~~~~~~l-~~aDl 275 (569)
T PRK09259 201 EAVDRALDLLKK--AKRPLIILGKGAAYAQADEQIREFVEKTGIPFLPMSMAKGLLPDTHPQSAA--AARSLAL-ANADV 275 (569)
T ss_pred HHHHHHHHHHHh--CCCCEEEECcCccccChHHHHHHHHHHHCCCEEecccccccCCCCChhhhh--HHHHHHH-hcCCE
Confidence 345666666654 489999999998766666888888888898876321 1 11 1222211 1222222 37899
Q ss_pred EEEecC
Q psy2427 111 FIAVGG 116 (660)
Q Consensus 111 IIavGG 116 (660)
||+||.
T Consensus 276 vl~lG~ 281 (569)
T PRK09259 276 VLLVGA 281 (569)
T ss_pred EEEeCC
Confidence 999994
No 351
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=41.95 E-value=1.5e+02 Score=31.35 Aligned_cols=86 Identities=14% Similarity=0.028 Sum_probs=52.5
Q ss_pred ECcChHHHHHHHHHhcCC--------CEEEEEE-Cccccc----cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHH
Q psy2427 33 IGPGVTREVGMDMVNMKA--------QRVCVMT-DPHLSK----LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEA 99 (660)
Q Consensus 33 ~G~g~~~~l~~~l~~~g~--------~r~liVt-d~~~~~----~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~ 99 (660)
..+..+++....+...|. .|+-|++ +..+.. .....-+.+.|++.|+++..+.-+. -+.+.+.+.
T Consensus 134 v~~~~~~~a~~~~~~~gi~~V~v~r~~rv~II~TG~Ev~~G~i~D~~~~~l~~~L~~~G~~v~~~~iv~--Dd~~~I~~a 211 (312)
T cd03522 134 VPEALVERAEALARDGPLLRVAPFRPLRVGLIVTGSEVYGGRIEDKFGPVLRARLAALGVELVEQVIVP--HDEAAIAAA 211 (312)
T ss_pred cCHHHHHHHHHHHHhCCCcEEEecCCCEEEEEEcCCcCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEcC--CCHHHHHHH
Confidence 455566666655553332 3555554 432211 1123567788988998876544332 235777777
Q ss_pred HHHhHhcCCCEEEEecCchhh
Q psy2427 100 TKFVRSVQCDAFIAVGGGSVI 120 (660)
Q Consensus 100 ~~~~~~~~~D~IIavGGGsvi 120 (660)
++.+.+.++|+||.-||-|+-
T Consensus 212 i~~~~~~g~DlIItTGGtsvg 232 (312)
T cd03522 212 IAEALEAGAELLILTGGASVD 232 (312)
T ss_pred HHHHhcCCCCEEEEeCCcccC
Confidence 777776679999999887663
No 352
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=41.94 E-value=1.7e+02 Score=32.07 Aligned_cols=23 Identities=35% Similarity=0.328 Sum_probs=15.1
Q ss_pred HHHHHHhHh---cCCC-EEEEecCchh
Q psy2427 97 LEATKFVRS---VQCD-AFIAVGGGSV 119 (660)
Q Consensus 97 ~~~~~~~~~---~~~D-~IIavGGGsv 119 (660)
.|+.+++.+ ..+| +|++||||+.
T Consensus 213 ~Ei~eQ~~~~~g~~pD~vVa~VGgGg~ 239 (397)
T PRK04346 213 EEAKAQILEKEGRLPDAVVACVGGGSN 239 (397)
T ss_pred HHHHHHHHHhhCCCCCEEEEecCccHh
Confidence 366665543 2467 6778898887
No 353
>TIGR02706 P_butyryltrans phosphate butyryltransferase. Members of this family are phosphate butyryltransferase, also called phosphotransbutyrylase. In general, this enzyme is found in butyrate-producing anaerobic bacteria, encoded next to the gene for butyrate kinase. Together, these two enzymes represent what may be the less common of two pathways for butyrate production from butyryl-CoA. The alternative is transfer of the CoA group to acetate by butyryl-CoA:acetate CoA transferase. Cutoffs for this model are set such that the homolog from Thermotoga maritima, whose activity on butyryl-CoA is only 30 % of its activity with acetyl-CoA, scores in the zone between trusted and noice cutoffs.
Probab=41.89 E-value=2.2e+02 Score=29.77 Aligned_cols=78 Identities=13% Similarity=0.173 Sum_probs=48.2
Q ss_pred cceEEECcChHHHH---HHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhH
Q psy2427 28 SSTIRIGPGVTREV---GMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVR 104 (660)
Q Consensus 28 ~~~i~~G~g~~~~l---~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~ 104 (660)
+.||.|..|.=.+. ...+.+.|.-++++|.++. .+.+.+++.+++..-+.-+.+.-..+.+..+++.++
T Consensus 13 ~~ri~~~~~~d~~vl~A~~~~~~~~~~~~iLvG~~~--------~I~~~~~~~~l~~~~ieIi~~~~~~~s~~~a~~lv~ 84 (294)
T TIGR02706 13 MKTVAVAVAQDEPVLEAVKEAKEHGIARAILVGDEE--------KINEIAKKIGMNLDDVEIVNAPSPKKAALLAVRLVS 84 (294)
T ss_pred CCeEEEeCCCCHHHHHHHHHHHHCCCceEEEECCHH--------HHHHHHHHcCCCccCcEEECCCCcHHHHHHHHHHHH
Confidence 35777766654442 2335666766777776643 344455554443222222333445678899999999
Q ss_pred hcCCCEEEE
Q psy2427 105 SVQCDAFIA 113 (660)
Q Consensus 105 ~~~~D~IIa 113 (660)
+.++|++|+
T Consensus 85 ~G~aD~~vs 93 (294)
T TIGR02706 85 TGKADMLMK 93 (294)
T ss_pred CCCCCEEEe
Confidence 999999995
No 354
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=41.78 E-value=74 Score=29.15 Aligned_cols=81 Identities=9% Similarity=0.094 Sum_probs=56.5
Q ss_pred CCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcc-------cCCCHHHHHHHHHHhHhcCCCEEEEecCchhhh
Q psy2427 49 KAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR-------VEPTGDSFLEATKFVRSVQCDAFIAVGGGSVID 121 (660)
Q Consensus 49 g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~-------~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD 121 (660)
..||++|+.|+.-..- ..+...++..|.++. |...+ +--++++=.++.+.+.++++.-||-|=|++=-.
T Consensus 5 ~gKkviiiGdRDGiPg---pAie~c~k~~gaevv-fs~TECfVctaAGAMDLEnQ~Rvk~~aEk~g~eNvvVllGaaeaE 80 (154)
T PRK13265 5 EGKKVIIIGDRDGIPG---PAIEECVKTTGAEVV-FSSTECFVUTAAGAMDLENQKRVKDLAEKFGAENVVVILGAAEAE 80 (154)
T ss_pred cCcEEEEEecCCCCCc---HHHHHHHhccCceEE-EEeeeEEEeecccccchHHHHHHHHHHHhcCCccEEEEecccchh
Confidence 3489999999874432 457777777787754 44332 244688889999999999997666666666667
Q ss_pred HHHHHHhHhcCC
Q psy2427 122 TCKAANLYYCDP 133 (660)
Q Consensus 122 ~AK~~a~~~~~~ 133 (660)
.+.+.|-+..+|
T Consensus 81 aaglaAETVt~G 92 (154)
T PRK13265 81 AAGLAAETVTNG 92 (154)
T ss_pred hccceeeeeccC
Confidence 777776666544
No 355
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=41.72 E-value=1.2e+02 Score=34.29 Aligned_cols=83 Identities=19% Similarity=0.212 Sum_probs=60.0
Q ss_pred HHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 38 TREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 38 ~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
+..|+..|++.|...+-++ |....... .+.+.+.+.+...+++.++.. .++...+.++++.+++..+++.|-+||.
T Consensus 25 l~~lAa~L~~~G~~~V~ii-D~~~~~~~-~~~~~~~l~~~~pdvVgis~~--t~~~~~a~~~~~~~k~~~P~~~iV~GG~ 100 (497)
T TIGR02026 25 VAYIGGALLDAGYHDVTFL-DAMTGPLT-DEKLVERLRAHCPDLVLITAI--TPAIYIACETLKFARERLPNAIIVLGGI 100 (497)
T ss_pred HHHHHHHHHhcCCcceEEe-cccccCCC-HHHHHHHHHhcCcCEEEEecC--cccHHHHHHHHHHHHHHCCCCEEEEcCC
Confidence 4667778888774444444 55554443 367888887777787777654 4678888899999999999999999998
Q ss_pred hhhhHHH
Q psy2427 118 SVIDTCK 124 (660)
Q Consensus 118 sviD~AK 124 (660)
-+.-..+
T Consensus 101 h~t~~~~ 107 (497)
T TIGR02026 101 HPTFMFH 107 (497)
T ss_pred CcCcCHH
Confidence 7654444
No 356
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=41.68 E-value=1.6e+02 Score=29.40 Aligned_cols=89 Identities=7% Similarity=-0.061 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCCCEEEEEECccccc--cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHH-hHhc--CCCEEEE
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKF-VRSV--QCDAFIA 113 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~-~~~~--~~D~IIa 113 (660)
..+.+++.+.|.+++.++.+..... ....+-+.+.+++.|+.+........+.+.+...+..+. ++.. .+|+|++
T Consensus 105 ~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~ 184 (264)
T cd06274 105 AELTRELLAAPPEEVLFLGGLPELSPSRERLAGFRQALADAGLPVQPDWIYAEGYSPESGYQLMAELLARLGRLPRALFT 184 (264)
T ss_pred HHHHHHHHHCCCCcEEEEeCCCcccchHHHHHHHHHHHHHcCCCCCcceeecCCCChHHHHHHHHHHHccCCCCCcEEEE
Confidence 3467778788889999998754221 112345677788777543211111122334444444443 4433 4799999
Q ss_pred ecCchhhhHHHHHH
Q psy2427 114 VGGGSVIDTCKAAN 127 (660)
Q Consensus 114 vGGGsviD~AK~~a 127 (660)
.+...+.-+.+++.
T Consensus 185 ~~d~~A~g~~~al~ 198 (264)
T cd06274 185 TSYTLLEGVLRFLR 198 (264)
T ss_pred cChHHHHHHHHHHH
Confidence 87766666555443
No 357
>cd01915 CODH Carbon monoxide dehydrogenase (CODH) is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA, respectively. CODH has two types of metal clusters, a cubane [Fe4-S4] center (B-cluster) similar to that of hybrid cluster protein (HCP) and a Ni-Fe-S center (C-cluster) where carbon monoxide oxidation occurs. Bifunctional CODH forms a heterotetramer with acetyl-CoA synthase (ACS) consisting of two CODH and two ACS subunits while monofunctional CODH forms a homodimer. Bifunctional CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP), while monofunctional CODH oxidizes carbon monoxide to carbon dioxide. CODH and ACS each have a metal cluster referred to as the C- and A-clusters, respectively.
Probab=41.20 E-value=35 Score=39.42 Aligned_cols=64 Identities=14% Similarity=0.161 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH-HHHHHHcCCCCc-------------ccccCCCCCcHHHHHHhhc
Q psy2427 568 SSPERHIEAAELLGADVSRVKKADAGKLLADTV-RGYMDQMKIENG-------------LKVLGYTSADIPALVTGTL 631 (660)
Q Consensus 568 ~~~~~~~~ia~~lg~~~~~~~~~~~~~~~~~~l-~~l~~~lglp~~-------------L~elGi~~~~i~~ia~~a~ 631 (660)
.+++|+.++|+.||++.++.+..+.+..+++.+ .+|.+.-+-|.+ ++++|+.+..+.+-+..++
T Consensus 107 ~d~~KL~~~A~~~gi~t~g~~~~eiA~~va~~~l~d~~~~~~~~~~~~~~~ap~~r~e~w~~lgi~p~gi~~ei~e~l 184 (613)
T cd01915 107 KDEEKLKALAKRLGIDTEGKSINEIAVEVAEIALEDFGRPREEPSRWVEAFAPEKRLELWEELGILPGGIDSEIAEAM 184 (613)
T ss_pred CCHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHHhcCCCCcchhhHhhhCCHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 578999999999999988877777776666543 344333232332 5778988777655555554
No 358
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=41.18 E-value=2.2e+02 Score=27.73 Aligned_cols=82 Identities=15% Similarity=0.104 Sum_probs=48.7
Q ss_pred ECcChHHH-HHHHHHhcC--CCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHH-HHHHHHHHhHhcCC
Q psy2427 33 IGPGVTRE-VGMDMVNMK--AQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGD-SFLEATKFVRSVQC 108 (660)
Q Consensus 33 ~G~g~~~~-l~~~l~~~g--~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~-~v~~~~~~~~~~~~ 108 (660)
.|.|+.-+ +-+.+.+-+ ..=++||+++.- . ...+..++.|+.+..++... .++.+ .-.++.+.+++.++
T Consensus 8 sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~--~----~~~~~A~~~gip~~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 80 (190)
T TIGR00639 8 SGNGSNLQAIIDACKEGKIPASVVLVISNKPD--A----YGLERAAQAGIPTFVLSLKD-FPSREAFDQAIIEELRAHEV 80 (190)
T ss_pred cCCChhHHHHHHHHHcCCCCceEEEEEECCcc--c----hHHHHHHHcCCCEEEECccc-cCchhhhhHHHHHHHHhcCC
Confidence 45555433 445454422 234556788642 1 23455667799887653211 12222 23467788889999
Q ss_pred CEEEEecCchhhh
Q psy2427 109 DAFIAVGGGSVID 121 (660)
Q Consensus 109 D~IIavGGGsviD 121 (660)
|.||.+|=+..+.
T Consensus 81 D~iv~~~~~~il~ 93 (190)
T TIGR00639 81 DLVVLAGFMRILG 93 (190)
T ss_pred CEEEEeCcchhCC
Confidence 9999999887764
No 359
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=41.00 E-value=1.4e+02 Score=31.19 Aligned_cols=81 Identities=11% Similarity=0.055 Sum_probs=50.5
Q ss_pred EEECcChHHHHHHHHH-----hcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHH-HHHHHHHHhH
Q psy2427 31 IRIGPGVTREVGMDMV-----NMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGD-SFLEATKFVR 104 (660)
Q Consensus 31 i~~G~g~~~~l~~~l~-----~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~-~v~~~~~~~~ 104 (660)
.+|++|.-..+-..+. +++.+=++|++++.- +....++.|+.+..++. .. .+.+ .-.++.+.++
T Consensus 93 ~vl~Sg~g~nl~al~~~~~~~~~~~~i~~visn~~~--------~~~lA~~~gIp~~~~~~-~~-~~~~~~~~~~~~~l~ 162 (286)
T PRK13011 93 LIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNHPD--------LEPLAAWHGIPFHHFPI-TP-DTKPQQEAQVLDVVE 162 (286)
T ss_pred EEEEcCCcccHHHHHHHHHcCCCCcEEEEEEECCcc--------HHHHHHHhCCCEEEeCC-Cc-CchhhhHHHHHHHHH
Confidence 3567776444555443 234455677777541 22225667999887653 12 2322 2335677888
Q ss_pred hcCCCEEEEecCchhhh
Q psy2427 105 SVQCDAFIAVGGGSVID 121 (660)
Q Consensus 105 ~~~~D~IIavGGGsviD 121 (660)
+.++|.||-.|=+.++.
T Consensus 163 ~~~~Dlivlagy~~il~ 179 (286)
T PRK13011 163 ESGAELVVLARYMQVLS 179 (286)
T ss_pred HhCcCEEEEeChhhhCC
Confidence 99999999999998886
No 360
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=40.82 E-value=1.8e+02 Score=29.41 Aligned_cols=88 Identities=13% Similarity=0.063 Sum_probs=51.7
Q ss_pred HHHHHHHHhcCCCEEEEEECcccccc--chHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhH-h-cCCCEEEEe
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKL--APVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVR-S-VQCDAFIAV 114 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~--~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~-~-~~~D~IIav 114 (660)
..+.++|.+.|.+|+.+|.+..-... ....-+.+.+++.|++...+. +....+.+...+..+.+. . .++|+|++.
T Consensus 107 ~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~a~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 185 (269)
T cd06287 107 RMLLEHLRAQGARQIALIVGSARRNSYLEAEAAYRAFAAEHGMPPVVLR-VDEAGGEEAGYAACAQLLAQHPDLDALCVP 185 (269)
T ss_pred HHHHHHHHHcCCCcEEEEeCCcccccHHHHHHHHHHHHHHcCCCcceeE-ecCCCChHHHHHHHHHHHhCCCCCCEEEEc
Confidence 44667778889999999976432111 123446677888887643221 112233444444444443 3 257999999
Q ss_pred cCchhhhHHHHHH
Q psy2427 115 GGGSVIDTCKAAN 127 (660)
Q Consensus 115 GGGsviD~AK~~a 127 (660)
..-.++-+.+++.
T Consensus 186 ~d~~A~gvl~al~ 198 (269)
T cd06287 186 VDAFAVGAVRAAT 198 (269)
T ss_pred CcHHHHHHHHHHH
Confidence 8777776666653
No 361
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=40.64 E-value=89 Score=29.94 Aligned_cols=59 Identities=10% Similarity=0.155 Sum_probs=36.8
Q ss_pred HHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHH-HHHhHhcCCCEEEEecCc------hhhhHHHHHHh
Q psy2427 67 VKATLDSLTRHGVKFELFDKVRVEPTGDSFLEA-TKFVRSVQCDAFIAVGGG------SVIDTCKAANL 128 (660)
Q Consensus 67 ~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~-~~~~~~~~~D~IIavGGG------sviD~AK~~a~ 128 (660)
.+.+.+.|+++|.++..+.-+ ++- .+.+... .+.+.+. +|+||-.||= ...++.+.+.-
T Consensus 29 G~~l~~~L~~ag~~~~~~~iV-~D~-~~~I~~~l~~~~~~~-~DvvlttGGTG~t~RDvTpEA~~~~~d 94 (169)
T COG0521 29 GPLLVELLEEAGHNVAAYTIV-PDD-KEQIRATLIALIDED-VDVVLTTGGTGITPRDVTPEATRPLFD 94 (169)
T ss_pred hhHHHHHHHHcCCccceEEEe-CCC-HHHHHHHHHHHhcCC-CCEEEEcCCccCCCCcCCHHHHHHHHh
Confidence 377899999999887555433 232 3344444 4444444 9999999984 34455555543
No 362
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=40.53 E-value=1.8e+02 Score=31.44 Aligned_cols=82 Identities=6% Similarity=0.050 Sum_probs=54.1
Q ss_pred HHHHHHhcCCCEEEEEECccccccch---HHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 41 VGMDMVNMKAQRVCVMTDPHLSKLAP---VKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 41 l~~~l~~~g~~r~liVtd~~~~~~~~---~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
+.+.++.++-+++.+|++..-...+. .+.+.+.+++.|+++...... +....+..++++.+++.+ +.||-.+..
T Consensus 128 ~~~ll~~~~W~~vaiiy~~~~~~~~~~~~~~~l~~~~~~~gi~v~~~~~~--~~~~~d~~~~l~~ik~~~-rvii~~~~~ 204 (387)
T cd06386 128 FSALFERFHWRSALLVYEDDKQERNCYFTLEGVHHVFQEEGYHMSIYPFD--ETKDLDLDEIIRAIQASE-RVVIMCAGA 204 (387)
T ss_pred HHHHHHhCCCeEEEEEEEcCCCCccceehHHHHHHHHHhcCceEEEEecC--CCCcccHHHHHHHHHhcC-cEEEEecCH
Confidence 45566778889999998655333222 578889999999887754322 222356777788888777 888876644
Q ss_pred hhhhHHHHHH
Q psy2427 118 SVIDTCKAAN 127 (660)
Q Consensus 118 sviD~AK~~a 127 (660)
-++..++.
T Consensus 205 --~~~~~ll~ 212 (387)
T cd06386 205 --DTIRSIML 212 (387)
T ss_pred --HHHHHHHH
Confidence 44444443
No 363
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=40.48 E-value=93 Score=35.91 Aligned_cols=93 Identities=15% Similarity=0.167 Sum_probs=64.8
Q ss_pred ceEEECcChHHH-HHHH----HHhcCCCEEEEEECcccccc------chHHHHHHHHHhCCCeEE-EEeCcccCCCHHHH
Q psy2427 29 STIRIGPGVTRE-VGMD----MVNMKAQRVCVMTDPHLSKL------APVKATLDSLTRHGVKFE-LFDKVRVEPTGDSF 96 (660)
Q Consensus 29 ~~i~~G~g~~~~-l~~~----l~~~g~~r~liVtd~~~~~~------~~~~~i~~~L~~~gi~~~-~~~~~~~~p~~~~v 96 (660)
+=++.|.|++.+ +..+ ...++..|.+++.|.+-... ..-+.+...++..|.++. +.+ ++ +.+.|
T Consensus 151 tYvl~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N~IsiDG~~~~~f~ed~~~RfeAyGW~vi~~~D---G~-D~e~I 226 (663)
T COG0021 151 TYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDISIDGDTSLSFTEDVAKRFEAYGWNVIRVID---GH-DLEAI 226 (663)
T ss_pred EEEEecCchHhcccHHHHHHHHhhcCCCcEEEEEeCCCceeccCcccccchhHHHHHHhcCCeEEEecC---CC-CHHHH
Confidence 456889999876 4433 34567789999998752221 244788899999999877 333 34 89999
Q ss_pred HHHHHHhHhc--CCC-----EEEEecCchhhhHHHH
Q psy2427 97 LEATKFVRSV--QCD-----AFIAVGGGSVIDTCKA 125 (660)
Q Consensus 97 ~~~~~~~~~~--~~D-----~IIavGGGsviD~AK~ 125 (660)
.++.+.++.. ++. .|||.|...--+..|.
T Consensus 227 ~~Ai~~Ak~~~dkPtlI~~kTiIG~Gsp~kegt~~~ 262 (663)
T COG0021 227 DKAIEEAKASTDKPTLIIVKTIIGKGSPNKEGTHKV 262 (663)
T ss_pred HHHHHHHHhcCCCCeEEEEEeeeecCCCCcCCCccc
Confidence 9999999873 443 5667766665566654
No 364
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=40.47 E-value=2e+02 Score=28.82 Aligned_cols=55 Identities=20% Similarity=0.198 Sum_probs=43.0
Q ss_pred hCCCeEE-EEeCcccCCCHHHHHHHHHHhHhcCCCEE-EEecCchhhhHHHHHHhHh
Q psy2427 76 RHGVKFE-LFDKVRVEPTGDSFLEATKFVRSVQCDAF-IAVGGGSVIDTCKAANLYY 130 (660)
Q Consensus 76 ~~gi~~~-~~~~~~~~p~~~~v~~~~~~~~~~~~D~I-IavGGGsviD~AK~~a~~~ 130 (660)
+.+..+. -|..++..|+.+.+.+..+.+++.++|.+ |++=--+.-|..+......
T Consensus 116 ~~~~kvI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~ 172 (228)
T TIGR01093 116 KGGTKIIMSYHDFQKTPSWEEIVERLEKALSYGADIVKIAVMANSKEDVLTLLEITN 172 (228)
T ss_pred HCCCEEEEeccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEeccCCHHHHHHHHHHHH
Confidence 3444443 35566778899999999999999999987 8888888889999887654
No 365
>COG2359 SpoVS Stage V sporulation protein SpoVS [Function unknown]
Probab=40.45 E-value=80 Score=25.72 Aligned_cols=42 Identities=19% Similarity=0.180 Sum_probs=31.9
Q ss_pred CCCHHHH-HHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhc
Q psy2427 90 EPTGDSF-LEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYC 131 (660)
Q Consensus 90 ~p~~~~v-~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~ 131 (660)
+.+...| -.++..+|+.+.--|=|||-|.+--..|++|...+
T Consensus 9 ~S~PnsVAGAlAgvlr~~g~aEiQAiGagAvNQaVKAiAiaRg 51 (87)
T COG2359 9 KSNPNSVAGALAGVLRERGKAEIQAIGAGAVNQAVKAIAIARG 51 (87)
T ss_pred CCCcchHHHHHHHHHHhcCceeeeeechHHHHHHHHHHHHHhh
Confidence 3443444 44566778888889999999999999999987654
No 366
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=40.29 E-value=1.3e+02 Score=31.49 Aligned_cols=78 Identities=5% Similarity=-0.024 Sum_probs=51.0
Q ss_pred HHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCC---eEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 41 VGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGV---KFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 41 l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi---~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
+.+++..+|.+|+.++.+..- ....+.+.+++.+. .+.. ..+.+ .. +....+..++..++|.||-.+.+
T Consensus 120 ~~~~~~~~~w~~vavl~~~~~----~~~~l~~~~~~~~~~g~~v~~-~~~~~--~~-d~~~~l~~i~~~~~d~vv~~~~~ 191 (327)
T cd06382 120 YADIVKSFNWKSFTIIYESAE----GLLRLQELLQAFGISGITITV-RQLDD--DL-DYRPLLKEIKNSGDNRIIIDCSA 191 (327)
T ss_pred HHHHHHhcCCcEEEEEecChH----HHHHHHHHHHhhccCCCeEEE-EEccC--Cc-cHHHHHHHHHhcCceEEEEECCH
Confidence 566677788899999998653 23556666666554 3332 22222 22 77788888899999999876654
Q ss_pred hhhhHHHHHHh
Q psy2427 118 SVIDTCKAANL 128 (660)
Q Consensus 118 sviD~AK~~a~ 128 (660)
-|++.++..
T Consensus 192 --~~~~~~~~q 200 (327)
T cd06382 192 --DILIELLKQ 200 (327)
T ss_pred --HHHHHHHHH
Confidence 456666543
No 367
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=39.99 E-value=1.4e+02 Score=31.53 Aligned_cols=89 Identities=15% Similarity=-0.001 Sum_probs=51.9
Q ss_pred HHHHHHHHhcCCCEEEEEECcccccc--chHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh--cCCCEEEEe
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKL--APVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS--VQCDAFIAV 114 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~--~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~IIav 114 (660)
..+.++|...|.+|+.+|.+..-... ...+-+++.+++.|+.+....-...+.+.+...+.++.+.+ .++|+|++.
T Consensus 165 ~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~gi~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 244 (346)
T PRK10401 165 RMATRMLLNNGHQRIGYLSSSHGIEDDAMRRAGWMSALKEQGIIPPESWIGTGTPDMQGGEAAMVELLGRNLQLTAVFAY 244 (346)
T ss_pred HHHHHHHHHCCCCeEEEEeCCCcCcchHHHHHHHHHHHHHcCCCCChhheecCCCChHHHHHHHHHHHcCCCCCcEEEEC
Confidence 34667788889999999976532111 12244667788888753211011223444444444444432 357999998
Q ss_pred cCchhhhHHHHHH
Q psy2427 115 GGGSVIDTCKAAN 127 (660)
Q Consensus 115 GGGsviD~AK~~a 127 (660)
+...++-+-+++.
T Consensus 245 nd~~A~g~~~al~ 257 (346)
T PRK10401 245 NDNMAAGALTALK 257 (346)
T ss_pred CcHHHHHHHHHHH
Confidence 8777776666554
No 368
>PRK06455 riboflavin synthase; Provisional
Probab=39.94 E-value=1.6e+02 Score=27.78 Aligned_cols=76 Identities=16% Similarity=0.178 Sum_probs=42.0
Q ss_pred CEEEEEECccccccchHHHHHHHHHhC--CCeEEEEeCcccCCCHHHHHHHH-HHhHhcCCCEEEEecCchhhhHHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRH--GVKFELFDKVRVEPTGDSFLEAT-KFVRSVQCDAFIAVGGGSVIDTCKAAN 127 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~--gi~~~~~~~~~~~p~~~~v~~~~-~~~~~~~~D~IIavGGGsviD~AK~~a 127 (660)
.|+.||....-.. ...+-..+.|++. +..+.++. -|-.-++--++ +.++..++|.||++|-=--.+.-++++
T Consensus 2 ~kigIV~s~fn~~-~L~~gAi~~L~~~g~~~~I~v~~----VPGa~ELP~aakkL~~~~~yDaVIaLG~VG~t~h~d~Va 76 (155)
T PRK06455 2 MKIGIADTTFARV-DMGSAAIDELRKLDPSAKIIRYT----VPGIKDLPVAAKKLIEEEGCDIVMALGMPGPTEKDKYCA 76 (155)
T ss_pred cEEEEEEEecchH-HHHHHHHHHHHhcCCCCceEEEE----CCCHHHHHHHHHHHHhcCCCCEEEEecceeccCcchhHH
Confidence 4666666554332 2446677778773 45555553 34444443344 344457899999998421122226666
Q ss_pred hHhc
Q psy2427 128 LYYC 131 (660)
Q Consensus 128 ~~~~ 131 (660)
....
T Consensus 77 ~~vS 80 (155)
T PRK06455 77 HEAS 80 (155)
T ss_pred HHHH
Confidence 5554
No 369
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=39.91 E-value=2e+02 Score=28.82 Aligned_cols=77 Identities=10% Similarity=0.065 Sum_probs=43.7
Q ss_pred CCCEEEEEECccc--cccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhH-h-cCCCEEEEecCchhhhHHH
Q psy2427 49 KAQRVCVMTDPHL--SKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVR-S-VQCDAFIAVGGGSVIDTCK 124 (660)
Q Consensus 49 g~~r~liVtd~~~--~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~-~-~~~D~IIavGGGsviD~AK 124 (660)
|.+|+.+++++.- ......+-+.+.+++.|+.+.... ...+.+.+...+.++.+. . .++|+|++.++..+.-+.+
T Consensus 124 g~~~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~ 202 (277)
T cd06319 124 ADGKVGMVAIPQKRKNGQKRTKGFKEAMKEAGCDLAGIR-QQKDFSYQETFDYTNDLLTANPDIRAIWLQGSDRYQGALD 202 (277)
T ss_pred CCCcEEEEeccCCCccHHHHHHHHHHHHHhcCCceEeec-cCCCCCHHHHHHHHHHHHHhCCCCCEEEECCCccchHHHH
Confidence 6688888875431 112233557788888887654221 122334444444444433 2 3468999998877655555
Q ss_pred HH
Q psy2427 125 AA 126 (660)
Q Consensus 125 ~~ 126 (660)
++
T Consensus 203 al 204 (277)
T cd06319 203 AI 204 (277)
T ss_pred HH
Confidence 44
No 370
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=39.77 E-value=1.3e+02 Score=32.68 Aligned_cols=83 Identities=10% Similarity=0.029 Sum_probs=56.7
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
..+.+.+..+|.+++.|+++..- ....++.+.+.++..|+++.... +.. .+..+....+..++..+.|.||--+ +
T Consensus 113 ~a~~~~i~~~~wk~vaiiYd~~~-~~~~lq~l~~~~~~~g~~v~~~~-~~~-~~~~d~~~~L~~ik~~~~~~iil~~--~ 187 (371)
T cd06388 113 GALLSLLDHYEWNRFVFLYDTDR-GYSILQAIMEKAGQNGWQVSAIC-VEN-FNDASYRRLLEDLDRRQEKKFVIDC--E 187 (371)
T ss_pred hHHHHHHHhcCceEEEEEecCCc-cHHHHHHHHHhhHhcCCeeeeEE-ecc-CCcHHHHHHHHHhcccccEEEEEEC--C
Confidence 34455677889999999998542 22446888888988898766432 221 2244788888999988999887754 5
Q ss_pred hhhHHHHH
Q psy2427 119 VIDTCKAA 126 (660)
Q Consensus 119 viD~AK~~ 126 (660)
.-+++.++
T Consensus 188 ~~~~~~il 195 (371)
T cd06388 188 IERLQNIL 195 (371)
T ss_pred HHHHHHHH
Confidence 55555554
No 371
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=39.75 E-value=67 Score=37.08 Aligned_cols=76 Identities=13% Similarity=0.048 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEE-eCc----ccCCCHH------HHHHHHHHhHhc
Q psy2427 38 TREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELF-DKV----RVEPTGD------SFLEATKFVRSV 106 (660)
Q Consensus 38 ~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~-~~~----~~~p~~~------~v~~~~~~~~~~ 106 (660)
++++.+.|.+ .+|++||.|..+...+..+++.+..++.|+.+..- .+- +.+|-.- .-..+.+.++
T Consensus 196 i~~a~~~L~~--A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~p~~hp~~~G~~G~~~~~~~~~~l~-- 271 (574)
T PRK07979 196 IKRALQTLVA--AKKPVVYVGGGAINAACHQQLKELVEKLNLPVVSSLMGLGAFPATHRQSLGMLGMHGTYEANMTMH-- 271 (574)
T ss_pred HHHHHHHHHc--CCCCEEEECCCccccchHHHHHHHHHHhCCCEEEccccCCCCCCCCcccccCCcCCCCHHHHHHHH--
Confidence 5555555544 48999999999876656688888888889876631 111 1222211 1112222333
Q ss_pred CCCEEEEecCc
Q psy2427 107 QCDAFIAVGGG 117 (660)
Q Consensus 107 ~~D~IIavGGG 117 (660)
++|+||+||--
T Consensus 272 ~aDlvl~vG~~ 282 (574)
T PRK07979 272 NADVIFAVGVR 282 (574)
T ss_pred hCCEEEEeCCC
Confidence 68999999943
No 372
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=39.75 E-value=2.3e+02 Score=27.85 Aligned_cols=49 Identities=12% Similarity=0.078 Sum_probs=34.6
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
..+.+...+++.|+++.+++. ..+.+...+.++.+...++|.||..+..
T Consensus 17 ~~~~~~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgvi~~~~~ 65 (267)
T cd01536 17 MNKGAEAAAKELGVELIVLDA---QNDVSKQIQQIEDLIAQGVDGIIISPVD 65 (267)
T ss_pred HHHHHHHHHHhcCceEEEECC---CCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 446677778888998887643 2245555677777777799999988654
No 373
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=39.66 E-value=1.1e+02 Score=26.37 Aligned_cols=78 Identities=13% Similarity=0.199 Sum_probs=46.4
Q ss_pred ChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh-cCCCEEEEe
Q psy2427 36 GVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS-VQCDAFIAV 114 (660)
Q Consensus 36 g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~D~IIav 114 (660)
|+. +.-+.|++.| +++++||+.+.... +.+.+.|++.|+.+.. +++ ......+.+.+++ .+-.-|..+
T Consensus 18 ga~-e~l~~L~~~g-~~~~~lTNns~~s~---~~~~~~L~~~Gi~~~~-~~i-----~ts~~~~~~~l~~~~~~~~v~vl 86 (101)
T PF13344_consen 18 GAV-EALDALRERG-KPVVFLTNNSSRSR---EEYAKKLKKLGIPVDE-DEI-----ITSGMAAAEYLKEHKGGKKVYVL 86 (101)
T ss_dssp THH-HHHHHHHHTT-SEEEEEES-SSS-H---HHHHHHHHHTTTT--G-GGE-----EEHHHHHHHHHHHHTTSSEEEEE
T ss_pred CHH-HHHHHHHHcC-CCEEEEeCCCCCCH---HHHHHHHHhcCcCCCc-CEE-----EChHHHHHHHHHhcCCCCEEEEE
Confidence 443 3334567777 89999999876543 6778888888988542 111 2233444455554 456788889
Q ss_pred cCchhhhHHH
Q psy2427 115 GGGSVIDTCK 124 (660)
Q Consensus 115 GGGsviD~AK 124 (660)
|.....+..+
T Consensus 87 G~~~l~~~l~ 96 (101)
T PF13344_consen 87 GSDGLREELR 96 (101)
T ss_dssp S-HHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 9886665554
No 374
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=39.65 E-value=82 Score=36.24 Aligned_cols=44 Identities=7% Similarity=0.040 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEE
Q psy2427 38 TREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFEL 83 (660)
Q Consensus 38 ~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~ 83 (660)
++++.+.|.+ .+|++|+.|......+..+.+.+..++.|+.+..
T Consensus 201 i~~~~~~L~~--AkrPvIl~G~g~~~~~a~~~l~~lae~~~~pv~t 244 (564)
T PRK08155 201 IRDAAAMINA--AKRPVLYLGGGVINSGAPARARELAEKAQLPTTM 244 (564)
T ss_pred HHHHHHHHHh--CCCCEEEECCCccccchHHHHHHHHHHHCCCEEE
Confidence 4555555543 5899999998876655567787777778887663
No 375
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=39.50 E-value=95 Score=29.40 Aligned_cols=61 Identities=15% Similarity=0.231 Sum_probs=36.9
Q ss_pred CEEEEEECccccc--cchHHHHHHHHHhCCCe---EEEEeCcccCCCHHHHHHHH-HHhHhcCCCEEEEec
Q psy2427 51 QRVCVMTDPHLSK--LAPVKATLDSLTRHGVK---FELFDKVRVEPTGDSFLEAT-KFVRSVQCDAFIAVG 115 (660)
Q Consensus 51 ~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~---~~~~~~~~~~p~~~~v~~~~-~~~~~~~~D~IIavG 115 (660)
-|+.||..+.-.. ..+++-..+.|++.|+. +.++. -|.--++--++ ..++..+.|.||++|
T Consensus 11 ~riaIV~srfn~~It~~Ll~gA~~~l~~~G~~~~~i~v~~----VPGA~EiP~~a~~l~~~~~yDaiIaLG 77 (158)
T PRK12419 11 QRIAFIQARWHADIVDQARKGFVAEIAARGGAASQVDIFD----VPGAFEIPLHAQTLAKTGRYAAIVAAA 77 (158)
T ss_pred CEEEEEEecCCHHHHHHHHHHHHHHHHHcCCCccceEEEE----CCcHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 4888888765322 12556677888888853 33332 34433333333 344556799999997
No 376
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=39.38 E-value=62 Score=38.56 Aligned_cols=57 Identities=14% Similarity=0.219 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCc
Q psy2427 93 GDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGT 167 (660)
Q Consensus 93 ~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gt 167 (660)
.+..+++++.++++++|.+|.|||--.++.|..++..... .+...+|+|.||=|.-.
T Consensus 464 ~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~------------------~~~~~i~vvgIPkTIDN 520 (745)
T TIGR02478 464 GKDLGMIAYYFQKHKIDGLLIIGGFEAFEALLQLEQAREK------------------YPAFRIPMVVIPATISN 520 (745)
T ss_pred hhHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhh------------------CCCCCccEEEecccccC
Confidence 5689999999999999999999999999988777543210 00112899999999733
No 377
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=39.03 E-value=1.2e+02 Score=31.87 Aligned_cols=85 Identities=12% Similarity=0.066 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
.-+..++.+.|.+|+.++++...+.....+.+.+.++ .++. ..........+....+..+++.++|.|+-.+.|.
T Consensus 123 ~~~~~~~~~~g~~~vail~~~~~~g~~~~~~~~~~~~---~~v~--~~~~~~~~~~d~~~~i~~l~~~~pd~v~~~~~~~ 197 (333)
T cd06359 123 EAMGKYAQDKGYKRVFLIAPNYQAGKDALAGFKRTFK---GEVV--GEVYTKLGQLDFSAELAQIRAAKPDAVFVFLPGG 197 (333)
T ss_pred HHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHhC---ceee--eeecCCCCCcchHHHHHHHHhCCCCEEEEEccCc
Confidence 3456667777889999998776554434455555553 1221 1111122334566667778889999998765443
Q ss_pred hhhHHHHHHhHh
Q psy2427 119 VIDTCKAANLYY 130 (660)
Q Consensus 119 viD~AK~~a~~~ 130 (660)
+++.++-.+.
T Consensus 198 --~~~~~~~~~~ 207 (333)
T cd06359 198 --MGVNFVKQYR 207 (333)
T ss_pred --cHHHHHHHHH
Confidence 4555554333
No 378
>PLN02573 pyruvate decarboxylase
Probab=38.96 E-value=71 Score=36.93 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=32.4
Q ss_pred hHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEE
Q psy2427 37 VTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE 82 (660)
Q Consensus 37 ~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~ 82 (660)
.++++.+.|.+ .+|++||.|..+...+..+++.+..+..|+.+.
T Consensus 213 ~~~~a~~~L~~--AkrPvil~G~g~~~~~a~~~l~~lae~~~~PV~ 256 (578)
T PLN02573 213 AVEAAAEFLNK--AVKPVLVGGPKLRVAKACKAFVELADASGYPVA 256 (578)
T ss_pred HHHHHHHHHHh--CCCCEEEEChhhcccchHHHHHHHHHHhCCCEE
Confidence 34455555544 489999999988766666888888888888765
No 379
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=38.82 E-value=1.3e+02 Score=27.92 Aligned_cols=64 Identities=19% Similarity=0.162 Sum_probs=41.3
Q ss_pred EEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCC-C-HHHHHHHHHHhHhcCCCEEEEe-cCc
Q psy2427 52 RVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEP-T-GDSFLEATKFVRSVQCDAFIAV-GGG 117 (660)
Q Consensus 52 r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p-~-~~~v~~~~~~~~~~~~D~IIav-GGG 117 (660)
|+.|-+|..-.+ +-+.+.+.|++.|.++.-|.....++ + .+....+++.+.+..+|.-|-+ |-|
T Consensus 1 KI~igsDh~g~~--lK~~i~~~L~~~g~eV~D~G~~~~~~~dy~~~a~~va~~V~~~~~d~GIliCgtG 67 (140)
T PF02502_consen 1 KIAIGSDHAGFE--LKEAIKEYLEEKGYEVIDFGTYSEDSVDYPDFAEKVAEAVASGEADRGILICGTG 67 (140)
T ss_dssp EEEEEE-GGGHH--HHHHHHHHHHHTTEEEEEESESSTST--HHHHHHHHHHHHHTTSSSEEEEEESSS
T ss_pred CEEEEeCHHHHH--HHHHHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHcccCCeEEEEcCCC
Confidence 567777776544 34789999999998887665443332 2 4556677777788888854444 444
No 380
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=38.73 E-value=1.9e+02 Score=29.94 Aligned_cols=76 Identities=17% Similarity=0.147 Sum_probs=51.7
Q ss_pred EECcChHHH---HHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCC
Q psy2427 32 RIGPGVTRE---VGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQC 108 (660)
Q Consensus 32 ~~G~g~~~~---l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~ 108 (660)
-+|.|=+-+ |++.+.+.| .++.+++.... ..+.+.+++.|.++..+++.. ...++.++..+.+++.++
T Consensus 11 ~iG~GHv~Rcl~LA~~l~~~g-~~v~f~~~~~~------~~~~~~i~~~g~~v~~~~~~~--~~~~d~~~~~~~l~~~~~ 81 (279)
T TIGR03590 11 EIGLGHVMRCLTLARALHAQG-AEVAFACKPLP------GDLIDLLLSAGFPVYELPDES--SRYDDALELINLLEEEKF 81 (279)
T ss_pred cccccHHHHHHHHHHHHHHCC-CEEEEEeCCCC------HHHHHHHHHcCCeEEEecCCC--chhhhHHHHHHHHHhcCC
Confidence 457776655 566776667 57777776542 224567778899887765432 134577888999999999
Q ss_pred CEEEEecC
Q psy2427 109 DAFIAVGG 116 (660)
Q Consensus 109 D~IIavGG 116 (660)
|.||.=+=
T Consensus 82 d~vV~D~y 89 (279)
T TIGR03590 82 DILIVDHY 89 (279)
T ss_pred CEEEEcCC
Confidence 98886553
No 381
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=38.41 E-value=92 Score=35.75 Aligned_cols=45 Identities=16% Similarity=0.024 Sum_probs=33.0
Q ss_pred ChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEE
Q psy2427 36 GVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE 82 (660)
Q Consensus 36 g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~ 82 (660)
..++++.+.|.+ .+|++||.+......+..+.+.+..+..|+.+.
T Consensus 192 ~~i~~~~~~L~~--A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pV~ 236 (557)
T PRK08199 192 ADLARLAELLAR--AERPLVILGGSGWTEAAVADLRAFAERWGLPVA 236 (557)
T ss_pred HHHHHHHHHHHh--CCCCEEEECCCcCchhHHHHHHHHHHHhCCCEE
Confidence 345666666654 489999999887655556888888888898776
No 382
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=38.12 E-value=2.4e+02 Score=27.64 Aligned_cols=49 Identities=14% Similarity=0.159 Sum_probs=35.8
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
..+.+++.+++.|+.+.+++. +-+.+...+..+.+...++|.||..+.-
T Consensus 17 ~~~g~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~iii~~~~ 65 (264)
T cd06267 17 LLRGIEEAAREAGYSVLLCNS---DEDPEKEREALELLLSRRVDGIILAPSR 65 (264)
T ss_pred HHHHHHHHHHHcCCEEEEEcC---CCCHHHHHHHHHHHHHcCcCEEEEecCC
Confidence 456777888888988876644 3445666777777888899999887654
No 383
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=38.04 E-value=1.2e+02 Score=35.13 Aligned_cols=45 Identities=9% Similarity=-0.012 Sum_probs=33.5
Q ss_pred hHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEE
Q psy2427 37 VTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFEL 83 (660)
Q Consensus 37 ~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~ 83 (660)
.++++.+.|.+ .+|++|+.|......+..+.+.+..++.|+.+..
T Consensus 185 ~i~~~~~~L~~--A~rP~i~~G~g~~~~~a~~~l~~lae~~~~PV~t 229 (579)
T TIGR03457 185 SLAQAARLLAE--AKFPVIISGGGVVMGDAVEECKALAERLGAPVVN 229 (579)
T ss_pred HHHHHHHHHHh--CCCCEEEECcCccccChHHHHHHHHHHhCCCEEE
Confidence 34556666654 4899999999987666668888888888988764
No 384
>TIGR01506 ribC_arch riboflavin synthase. This archaeal protein catalyzes the same reaction, the final step in riboflavin biosynthesis, as bacterial riboflavin biosynthesis alpha chain. However, it is more similar in sequence to 6,7-dimethyl-8-ribityllumazine synthase, which catalyzes the previous reaction and which (in bacteria) is called the riboflavin synthase beta chain.
Probab=38.01 E-value=1.2e+02 Score=28.37 Aligned_cols=57 Identities=21% Similarity=0.339 Sum_probs=34.1
Q ss_pred EECccccccchHHHHHHHHHh--CCCeEEEEeCcccCCCHHHHHHHHH-HhHhcCCCEEEEecC
Q psy2427 56 MTDPHLSKLAPVKATLDSLTR--HGVKFELFDKVRVEPTGDSFLEATK-FVRSVQCDAFIAVGG 116 (660)
Q Consensus 56 Vtd~~~~~~~~~~~i~~~L~~--~gi~~~~~~~~~~~p~~~~v~~~~~-~~~~~~~D~IIavGG 116 (660)
|.|..+.+.....-..+.|++ .++.+.++. -|-.-++--+++ .++..++|.||++|-
T Consensus 4 ~~~ttf~~~~M~~gA~~~L~~~g~g~~i~v~~----VPGa~EiP~aak~l~~~~~~DaVIaLG~ 63 (151)
T TIGR01506 4 IADTTFARYDMGGAAIDELRKHTAGIKIIRRT----VPGIKDLPVAAKKLLEEEGCEMVITLGW 63 (151)
T ss_pred eecchhhhhhHHHHHHHHHHhcCCCCeEEEEE----CCcHhHHHHHHHHHHhcCCCCEEEEece
Confidence 345555555455666777777 676666554 344444444443 344467999999974
No 385
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=37.98 E-value=1.4e+02 Score=32.08 Aligned_cols=28 Identities=7% Similarity=-0.113 Sum_probs=22.2
Q ss_pred HHHHHHHhHhcCCCEEEEecCchhhhHH
Q psy2427 96 FLEATKFVRSVQCDAFIAVGGGSVIDTC 123 (660)
Q Consensus 96 v~~~~~~~~~~~~D~IIavGGGsviD~A 123 (660)
..++.+.+++.++|+||+.++...+..+
T Consensus 93 ~~~l~~~l~~~~pD~Vi~~~~~~~~~~~ 120 (380)
T PRK13609 93 RKRLKLLLQAEKPDIVINTFPIIAVPEL 120 (380)
T ss_pred HHHHHHHHHHhCcCEEEEcChHHHHHHH
Confidence 4677888899999999998887765443
No 386
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=37.74 E-value=1.9e+02 Score=30.35 Aligned_cols=89 Identities=11% Similarity=0.044 Sum_probs=51.4
Q ss_pred HHHHHHHHhcCCCEEEEEECcccccc--chHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh--cCCCEEEEe
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKL--APVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS--VQCDAFIAV 114 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~--~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~IIav 114 (660)
..+.++|.+.|.+|+.++.+...... ....-+.+.|++.|+.+.....+....+.+...+.++.+.+ .++|+|++.
T Consensus 171 ~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 250 (342)
T PRK10014 171 QLLTEHLIRNGHQRIAWLGGQSSSLTRAERVGGYCATLLKFGLPFHSEWVLECTSSQKQAAEAITALLRHNPTISAVVCY 250 (342)
T ss_pred HHHHHHHHHCCCCEEEEEcCCcccccHHHHHHHHHHHHHHcCCCCCcceEecCCCChHHHHHHHHHHHcCCCCCCEEEEC
Confidence 45677888889899999976532211 12234667788878653211111122333444444443332 257999998
Q ss_pred cCchhhhHHHHHH
Q psy2427 115 GGGSVIDTCKAAN 127 (660)
Q Consensus 115 GGGsviD~AK~~a 127 (660)
....++.+-+++.
T Consensus 251 nd~~A~g~~~~l~ 263 (342)
T PRK10014 251 NETIAMGAWFGLL 263 (342)
T ss_pred CcHHHHHHHHHHH
Confidence 8888776666553
No 387
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=37.40 E-value=2.7e+02 Score=27.84 Aligned_cols=86 Identities=5% Similarity=0.085 Sum_probs=51.8
Q ss_pred HHHHHHHhc--CCCEEEEEECcc-ccc-cchHHHHHHHHHhC-CCeEEEEeCcccCCCHHHHHHHH-HHhHh-cCCCEEE
Q psy2427 40 EVGMDMVNM--KAQRVCVMTDPH-LSK-LAPVKATLDSLTRH-GVKFELFDKVRVEPTGDSFLEAT-KFVRS-VQCDAFI 112 (660)
Q Consensus 40 ~l~~~l~~~--g~~r~liVtd~~-~~~-~~~~~~i~~~L~~~-gi~~~~~~~~~~~p~~~~v~~~~-~~~~~-~~~D~II 112 (660)
.+.+++.+. |.+|++++.+.. ... ....+-+.+.+++. |+++.... ..+.+.+...+.+ +.++. .++|+|+
T Consensus 110 ~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ai~ 187 (275)
T cd06320 110 RGAEWIIDKLAEGGKVAIIEGKAGAFAAEQRTEGFTEAIKKASGIEVVASQ--PADWDREKAYDVATTILQRNPDLKAIY 187 (275)
T ss_pred HHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHHHHhhCCCcEEEEec--CCCccHHHHHHHHHHHHHhCCCccEEE
Confidence 355666655 777999887643 221 11235577788888 87754321 1223333333333 33333 3579999
Q ss_pred EecCchhhhHHHHHH
Q psy2427 113 AVGGGSVIDTCKAAN 127 (660)
Q Consensus 113 avGGGsviD~AK~~a 127 (660)
+.+...++.+.+++.
T Consensus 188 ~~~d~~a~~~~~al~ 202 (275)
T cd06320 188 CNNDTMALGVVEAVK 202 (275)
T ss_pred ECCchhHHHHHHHHH
Confidence 999999988888774
No 388
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=37.37 E-value=75 Score=35.55 Aligned_cols=54 Identities=11% Similarity=-0.013 Sum_probs=43.8
Q ss_pred HHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCC
Q psy2427 94 DSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSG 166 (660)
Q Consensus 94 ~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~g 166 (660)
....++++.+++.++|.++.|||-=.++.|..++....+- ...+++|.||=|.-
T Consensus 163 ~~~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~-------------------g~~I~VIGIPKTID 216 (459)
T PTZ00286 163 FDPKVMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRR-------------------KLNISVVGIPKTID 216 (459)
T ss_pred hhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHh-------------------CCCceEEEeccccC
Confidence 4789999999999999999999999999998877654311 01189999999973
No 389
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=37.36 E-value=26 Score=33.65 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=16.3
Q ss_pred HHHhHhcCCCEEEEecCchhhhHH
Q psy2427 100 TKFVRSVQCDAFIAVGGGSVIDTC 123 (660)
Q Consensus 100 ~~~~~~~~~D~IIavGGGsviD~A 123 (660)
++.+...+ +.|||-|||++++=-
T Consensus 65 l~~l~~~~-~~ViaTGGG~v~~~e 87 (172)
T COG0703 65 LKELLEED-NAVIATGGGAVLSEE 87 (172)
T ss_pred HHHHhhcC-CeEEECCCccccCHH
Confidence 34444444 799999999998643
No 390
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=37.32 E-value=92 Score=31.03 Aligned_cols=76 Identities=18% Similarity=0.172 Sum_probs=42.4
Q ss_pred cChHHHHHHHHHhc--CCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEE
Q psy2427 35 PGVTREVGMDMVNM--KAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFI 112 (660)
Q Consensus 35 ~g~~~~l~~~l~~~--g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~II 112 (660)
.+..+.+...+.+. ..+|++++.+... .+.+.+.|++.|..+..+.-.+..+...............++|.|+
T Consensus 108 ~~~~~~l~~~l~~~~~~~~~ili~~~~~~-----~~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~iv 182 (249)
T PRK05928 108 DGESSELLLELPELLLKGKRVLYLRGNGG-----REVLGDTLEERGAEVDECEVYERVPPKLDGAELLARLQSGEVDAVI 182 (249)
T ss_pred CCcChHHHHhChhhhcCCCEEEEECCCCC-----HHHHHHHHHHCCCEEeEEEEEEeeCCCCChHHHHHHHHhCCCCEEE
Confidence 34445555555543 3378888877653 2568888888888766444333333222223333444456788766
Q ss_pred Eec
Q psy2427 113 AVG 115 (660)
Q Consensus 113 avG 115 (660)
=.-
T Consensus 183 ftS 185 (249)
T PRK05928 183 FTS 185 (249)
T ss_pred ECC
Confidence 543
No 391
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=37.17 E-value=1.6e+02 Score=28.23 Aligned_cols=85 Identities=16% Similarity=0.263 Sum_probs=48.2
Q ss_pred EEE--CcChHHH-HHHHHHhcCCC--EEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh
Q psy2427 31 IRI--GPGVTRE-VGMDMVNMKAQ--RVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS 105 (660)
Q Consensus 31 i~~--G~g~~~~-l~~~l~~~g~~--r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~ 105 (660)
++| |.+...+ +-+.+.+.+.. -++|||++.-... .......++....+....-.+....-.+..+.+++
T Consensus 4 ~~~~Sg~~~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (181)
T PF00551_consen 4 VFFGSGSGSFLKALLEALKARGHNVEIVLVITNPDKPRG------RSRAIKNGIPAQVADEKNFQPRSENDEELLELLES 77 (181)
T ss_dssp EEEESSSSHHHHHHHHHHHTTSSEEEEEEEEESSTTTHH------HHHHHHTTHHEEEHHGGGSSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCCHHHHHHHHHHHhCCCCceEEEEecccccccc------ccccccCCCCEEeccccCCCchHhhhhHHHHHHHh
Confidence 467 5554433 34445555533 5777887653221 11222345555555544444555566778899999
Q ss_pred cCCCEEEEecCchhhh
Q psy2427 106 VQCDAFIAVGGGSVID 121 (660)
Q Consensus 106 ~~~D~IIavGGGsviD 121 (660)
.++|.+|.+|=|..+.
T Consensus 78 ~~~Dl~v~~~~~~il~ 93 (181)
T PF00551_consen 78 LNPDLIVVAGYGRILP 93 (181)
T ss_dssp TT-SEEEESS-SS---
T ss_pred hccceeehhhhHHHhh
Confidence 9999999999887764
No 392
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=37.14 E-value=1.4e+02 Score=31.27 Aligned_cols=80 Identities=10% Similarity=0.091 Sum_probs=48.9
Q ss_pred EECcChHHHHHHHH---Hh--cCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHH-HHHHHHHHhHh
Q psy2427 32 RIGPGVTREVGMDM---VN--MKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGD-SFLEATKFVRS 105 (660)
Q Consensus 32 ~~G~g~~~~l~~~l---~~--~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~-~v~~~~~~~~~ 105 (660)
+|++|.-..|...+ +. ++.+=++|++++.- +....++.|+.+.+++.-. .+.+ .-.++.+.+++
T Consensus 94 vl~Sg~gsnl~al~~~~~~~~~~~~i~~visn~~~--------~~~lA~~~gIp~~~~~~~~--~~~~~~~~~~~~~l~~ 163 (286)
T PRK06027 94 ILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHDD--------LRSLVERFGIPFHHVPVTK--ETKAEAEARLLELIDE 163 (286)
T ss_pred EEEcCCCCCHHHHHHHHHcCCCCcEEEEEEEcChh--------HHHHHHHhCCCEEEeccCc--cccchhHHHHHHHHHH
Confidence 45555444454444 33 34556777787641 2223566799987764321 1222 23356788899
Q ss_pred cCCCEEEEecCchhhh
Q psy2427 106 VQCDAFIAVGGGSVID 121 (660)
Q Consensus 106 ~~~D~IIavGGGsviD 121 (660)
.++|+||-.|=+.++.
T Consensus 164 ~~~Dlivlagy~~il~ 179 (286)
T PRK06027 164 YQPDLVVLARYMQILS 179 (286)
T ss_pred hCCCEEEEecchhhcC
Confidence 9999999999887765
No 393
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=37.12 E-value=3e+02 Score=28.66 Aligned_cols=78 Identities=21% Similarity=0.317 Sum_probs=49.5
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEE--EEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHh
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE--LFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANL 128 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~--~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~ 128 (660)
+++.+|+-...... .+.++.+.|++...... +++.+ -+.|.+.=+++.++++ ++|++|-|||-..-.+-|++-.
T Consensus 155 ~kv~vvsQTT~~~~-~~~~i~~~l~~~~~~~~~~~~nTI-C~aT~~RQ~a~~~La~--~vD~miVIGg~~SsNT~kL~ei 230 (281)
T PF02401_consen 155 KKVAVVSQTTQSVE-KFEEIVEALKKRFPELEGPVFNTI-CYATQNRQEAARELAK--EVDAMIVIGGKNSSNTRKLAEI 230 (281)
T ss_dssp TCEEEEE-TTS-HH-HHHHHHHHHHHHSTCEE-SCC-S---CHHHHHHHHHHHHHC--CSSEEEEES-TT-HHHHHHHHH
T ss_pred CeEEEEEeecccHH-HHHHHHHHHHHhCccccCCCCCCC-CHhHHHHHHHHHHHHh--hCCEEEEecCCCCccHHHHHHH
Confidence 57888877665443 45888899988766665 44432 3444444444444433 6999999999999999999876
Q ss_pred HhcC
Q psy2427 129 YYCD 132 (660)
Q Consensus 129 ~~~~ 132 (660)
.-..
T Consensus 231 a~~~ 234 (281)
T PF02401_consen 231 AKEH 234 (281)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 6653
No 394
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=37.11 E-value=2.8e+02 Score=28.58 Aligned_cols=65 Identities=17% Similarity=0.216 Sum_probs=32.7
Q ss_pred CEEEEEECccccccchHHHHHHHHHhC--CCeEEEEeCcccCCCHHHHHHH----------------HHHhHhcCCCEEE
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRH--GVKFELFDKVRVEPTGDSFLEA----------------TKFVRSVQCDAFI 112 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~--gi~~~~~~~~~~~p~~~~v~~~----------------~~~~~~~~~D~II 112 (660)
+++||..|.. .......++.+.|.+. ++.+.+..+ ..++..+.+++. .+.+. .+|.+|
T Consensus 171 ~~iLi~~GG~-d~~~~~~~~l~~l~~~~~~~~i~vv~G-~~~~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~--~aDl~I 246 (279)
T TIGR03590 171 RRVLVSFGGA-DPDNLTLKLLSALAESQINISITLVTG-SSNPNLDELKKFAKEYPNIILFIDVENMAELMN--EADLAI 246 (279)
T ss_pred CeEEEEeCCc-CCcCHHHHHHHHHhccccCceEEEEEC-CCCcCHHHHHHHHHhCCCEEEEeCHHHHHHHHH--HCCEEE
Confidence 4566666543 2222446677777653 334444332 223444444433 33333 458888
Q ss_pred EecCchh
Q psy2427 113 AVGGGSV 119 (660)
Q Consensus 113 avGGGsv 119 (660)
+-||+++
T Consensus 247 s~~G~T~ 253 (279)
T TIGR03590 247 GAAGSTS 253 (279)
T ss_pred ECCchHH
Confidence 8666543
No 395
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=37.11 E-value=1.6e+02 Score=29.16 Aligned_cols=100 Identities=18% Similarity=0.284 Sum_probs=61.3
Q ss_pred eEEeccceEEECcChHHHHHHH-------------------HHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEE
Q psy2427 23 AFEMASSTIRIGPGVTREVGMD-------------------MVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFEL 83 (660)
Q Consensus 23 ~~~~~~~~i~~G~g~~~~l~~~-------------------l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~ 83 (660)
.|......++.|.|--.++... |+.+|.+|+.|+|- ...+.. ++..+.|+.+|+++.-
T Consensus 72 ~Y~CtsgS~i~G~~~d~ei~~~ie~~~~v~vvTts~Avv~aL~al~a~ri~vlTP-Y~~evn--~~e~ef~~~~Gfeiv~ 148 (238)
T COG3473 72 VYGCTSGSLIGGPGYDKEIAQRIEEAKGVPVVTTSTAVVEALNALGAQRISVLTP-YIDEVN--QREIEFLEANGFEIVD 148 (238)
T ss_pred EEeccceeeecCCchhHHHHHHHHhccCCceeechHHHHHHHHhhCcceEEEecc-chhhhh--hHHHHHHHhCCeEEEE
Confidence 4444445566676655555444 44566677776653 333322 6778899999999887
Q ss_pred EeCccc-------CCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHH
Q psy2427 84 FDKVRV-------EPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAAN 127 (660)
Q Consensus 84 ~~~~~~-------~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a 127 (660)
|.+.+- .-+...+-++++.+..-++|.|+.= -..+-+.-.+.
T Consensus 149 ~~~Lgi~dn~eigr~~P~~~y~lAk~~~~~~~DaiFiS--CTnlRt~eii~ 197 (238)
T COG3473 149 FKGLGITDNLEIGRQEPWAVYRLAKEVFTPDADAIFIS--CTNLRTFEIIE 197 (238)
T ss_pred eeccCCcccchhcccChHHHHHHHHHhcCCCCCeEEEE--eeccccHHHHH
Confidence 765432 2335577788888888889977653 34444444443
No 396
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=37.09 E-value=3e+02 Score=27.06 Aligned_cols=86 Identities=16% Similarity=0.169 Sum_probs=48.5
Q ss_pred HHHHHHHHhc--CCCEEEEEECccc--cccchHHHHHHHHHhC-CCeEEEEeCcccCCCHHHHHHHHHHhHhc--CCCEE
Q psy2427 39 REVGMDMVNM--KAQRVCVMTDPHL--SKLAPVKATLDSLTRH-GVKFELFDKVRVEPTGDSFLEATKFVRSV--QCDAF 111 (660)
Q Consensus 39 ~~l~~~l~~~--g~~r~liVtd~~~--~~~~~~~~i~~~L~~~-gi~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~D~I 111 (660)
..+.+++.+. |.+|+.+++++.. ......+-+.+.+++. ++.+... .....+.....+.+..+.+. +++.|
T Consensus 108 ~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i 185 (267)
T cd01536 108 RLAGEYLAKLLGGKGKVAIIEGPPGSSNAQERVKGFRDALKEYPDIEIVAV--QDGNWDREKALQAMEDLLQANPDIDAI 185 (267)
T ss_pred HHHHHHHHHHhCCCceEEEEEcccccchHHHHHHHHHHHHHhCCCcEEEEE--ecCCCcHHHHHHHHHHHHHhCCCccEE
Confidence 3466677666 7899999987642 2222345577788877 4654321 12233344444444444332 36788
Q ss_pred EEecCchhhhHHHHH
Q psy2427 112 IAVGGGSVIDTCKAA 126 (660)
Q Consensus 112 IavGGGsviD~AK~~ 126 (660)
++..-.-...+.+++
T Consensus 186 ~~~~d~~a~~~~~~l 200 (267)
T cd01536 186 FAANDSMALGAVAAL 200 (267)
T ss_pred EEecCCchHHHHHHH
Confidence 887765555555544
No 397
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=37.09 E-value=1.8e+02 Score=29.61 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=38.1
Q ss_pred HHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHh
Q psy2427 68 KATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYY 130 (660)
Q Consensus 68 ~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~ 130 (660)
+-+++.-++.|+++..++. .++.+...+.++.+.+.++|+||+.|..- .|...-+|..+
T Consensus 21 ~G~~~~~~~~gv~~~~~e~---~~~~~~~~~~i~~~~~~g~dlIi~~g~~~-~~~~~~vA~~~ 79 (258)
T cd06353 21 EGRKAAEKALGVEVTYVEN---VPEGADAERVLRELAAQGYDLIFGTSFGF-MDAALKVAKEY 79 (258)
T ss_pred HHHHHHHHhcCCeEEEEec---CCchHhHHHHHHHHHHcCCCEEEECchhh-hHHHHHHHHHC
Confidence 4444444556888776543 33567888888888888999999966544 44444444433
No 398
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=37.04 E-value=1.1e+02 Score=35.52 Aligned_cols=44 Identities=11% Similarity=0.024 Sum_probs=33.1
Q ss_pred hHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEE
Q psy2427 37 VTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE 82 (660)
Q Consensus 37 ~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~ 82 (660)
.++++.+.|.+ .+|++||.|..+...+..+.+.+..+..|+.+.
T Consensus 210 ~i~~~~~~L~~--AkrPvil~G~g~~~~~a~~~l~~lae~~g~pv~ 253 (587)
T PRK06965 210 QIRKAVSLLLS--AKRPYIYTGGGVILANASRELRQLADLLGYPVT 253 (587)
T ss_pred HHHHHHHHHHh--cCCCEEEECCCccccchHHHHHHHHHHhCCCEE
Confidence 45566666654 489999999998766666888888888898766
No 399
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=37.02 E-value=91 Score=34.74 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=43.1
Q ss_pred HHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCC
Q psy2427 94 DSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSG 166 (660)
Q Consensus 94 ~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~g 166 (660)
...+++++.+++.++|.++.|||-=.++.|..++....+- .-.+++|.||=|.-
T Consensus 159 ~~~~~iv~~L~~~~I~~L~vIGGdgT~~gA~~l~ee~~~~-------------------g~~I~VIGIPKTID 212 (443)
T PRK06830 159 QDPEEIVDTLERMNINILFVIGGDGTLRGASAIAEEIERR-------------------GLKISVIGIPKTID 212 (443)
T ss_pred hhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHh-------------------CCCceEEEeccccC
Confidence 4688999999999999999999999999998776543310 00189999999973
No 400
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=36.83 E-value=1.5e+02 Score=29.49 Aligned_cols=89 Identities=11% Similarity=0.013 Sum_probs=50.5
Q ss_pred HHHHHHHHhcCCCEEEEEECcccccc--chHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhH-hc-CCCEEEEe
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKL--APVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVR-SV-QCDAFIAV 114 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~--~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~-~~-~~D~IIav 114 (660)
..+.++|.+.|.+|+.++.+..-... ...+-+.+.+++.++++........+.+.+...+.++.+. +. ++|+|++-
T Consensus 106 ~~~~~~l~~~G~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 185 (269)
T cd06275 106 YLATRHLIELGHRRIGCITGPLEKAPAQQRLAGFRRAMAEAGLPVNPGWIVEGDFECEGGYEAMQRLLAQPKRPTAVFCG 185 (269)
T ss_pred HHHHHHHHHCCCceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCHHHhccCCCChHHHHHHHHHHHcCCCCCcEEEEC
Confidence 34567777789899999976432211 1234466778777776432111122334444444444443 32 57999998
Q ss_pred cCchhhhHHHHHH
Q psy2427 115 GGGSVIDTCKAAN 127 (660)
Q Consensus 115 GGGsviD~AK~~a 127 (660)
+.....-+.+++.
T Consensus 186 ~d~~a~g~~~~l~ 198 (269)
T cd06275 186 NDLMAMGALCAAQ 198 (269)
T ss_pred ChHHHHHHHHHHH
Confidence 7766655544443
No 401
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=36.76 E-value=1.5e+02 Score=30.15 Aligned_cols=75 Identities=13% Similarity=0.179 Sum_probs=51.2
Q ss_pred ChHHHHHHHHHhcC--CCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE
Q psy2427 36 GVTREVGMDMVNMK--AQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA 113 (660)
Q Consensus 36 g~~~~l~~~l~~~g--~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa 113 (660)
+.-+.+...+..+. .+|++++.+.... +.+.+.|...|+++..+.-....|.........+.....++|.|+=
T Consensus 107 ~~~~~l~~~l~~~~~~~~~vl~~~~~~~r-----~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~v~f 181 (248)
T COG1587 107 GDSEGLLEELPELLKGGKRVLILRGNGGR-----EVLEEKLEERGAEVREVEVYRTEPPPLDEATLIELLKLGEVDAVVF 181 (248)
T ss_pred cchHHHHHHhhhhccCCCeEEEEcCCCch-----HHHHHHHHhCCCEEEEEeeeeecCCCccHHHHHHHHHhCCCCEEEE
Confidence 33344555555542 3799999887753 5688899999998876555555555445666677788888998876
Q ss_pred ec
Q psy2427 114 VG 115 (660)
Q Consensus 114 vG 115 (660)
-=
T Consensus 182 tS 183 (248)
T COG1587 182 TS 183 (248)
T ss_pred eC
Confidence 53
No 402
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=36.72 E-value=99 Score=32.16 Aligned_cols=54 Identities=11% Similarity=0.128 Sum_probs=42.5
Q ss_pred chHHHHHHHHHhCCCeEEEEeCcc------cCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 65 APVKATLDSLTRHGVKFELFDKVR------VEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 65 ~~~~~i~~~L~~~gi~~~~~~~~~------~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
..+++.++.|++.|+++.+-+.+. ..+..+..+++.+.+.+-++|.|+++-||-
T Consensus 14 ~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ 73 (282)
T cd07025 14 ERLERAIARLESLGLEVVVGPHVLARDGYLAGTDEERAADLNAAFADPEIKAIWCARGGY 73 (282)
T ss_pred HHHHHHHHHHHhCCCEEEeccchhhhcCccCCCHHHHHHHHHHHhhCCCCCEEEEcCCcC
Confidence 355888899999999887544322 355678888899999999999999999985
No 403
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=36.59 E-value=1.2e+02 Score=32.09 Aligned_cols=67 Identities=12% Similarity=0.051 Sum_probs=47.6
Q ss_pred EEEEEECccc-cc--cchHHHHHHHHHhCCCeEEEEeCcc------cCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 52 RVCVMTDPHL-SK--LAPVKATLDSLTRHGVKFELFDKVR------VEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 52 r~liVtd~~~-~~--~~~~~~i~~~L~~~gi~~~~~~~~~------~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
++-||+-.+- .. ...+++..+.|++.|+++.+-..+. ..+..+..+++.+.+.+-.+|.|+++-||-
T Consensus 2 ~I~ivAPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~ 77 (308)
T cd07062 2 TIAVVSPSSGIPGELPHRLERAKKRLENLGFEVVEGPNALKGDKYLSASPEERAEELMAAFADPSIKAIIPTIGGD 77 (308)
T ss_pred eEEEEeCCCCCcccCHHHHHHHHHHHHhCCCEEEEecccccccccccCCHHHHHHHHHHHhcCCCCCEEEECCccc
Confidence 5566665442 21 2345778888999999987654432 244577888888899988999999999985
No 404
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=36.58 E-value=3.1e+02 Score=27.17 Aligned_cols=51 Identities=14% Similarity=0.125 Sum_probs=35.8
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchh
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSV 119 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 119 (660)
+.+.+.+.+++.|+.+.+++. +-+.+.-.+..+.+...++|+||-+|....
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiii~~~~~~ 67 (268)
T cd06273 17 VIQAFQETLAAHGYTLLVASS---GYDLDREYAQARKLLERGVDGLALIGLDHS 67 (268)
T ss_pred HHHHHHHHHHHCCCEEEEecC---CCCHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 456788888889988877543 334455556666677778999998876543
No 405
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=36.58 E-value=1.6e+02 Score=30.27 Aligned_cols=95 Identities=12% Similarity=0.009 Sum_probs=56.8
Q ss_pred eEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccc-cc-cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHH
Q psy2427 23 AFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHL-SK-LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEAT 100 (660)
Q Consensus 23 ~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~-~~-~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~ 100 (660)
.|++-|++-.-+...+.++.+.+..++ --.+.||+... .. ..........++..|+++...- .-.+.+...+++.+
T Consensus 2 S~E~~Pp~~~~~~~~l~~~~~~~~~~~-~d~v~Vt~~~~g~~~~~t~~~a~~l~~~~g~~~i~Hl-t~r~~n~~~l~~~L 79 (274)
T cd00537 2 SFEFFPPKTADGEENLEAAADLLGALD-PDFVSVTDGAGGSTRDMTLLAAARILQEGGIEPIPHL-TCRDRNRIELQSIL 79 (274)
T ss_pred EEEEeCcCCccHHHHHHHHHHHhhcCC-CCEEEeCCCCCCchhhhHHHHHHHHHHhcCCCeeeec-ccCCCCHHHHHHHH
Confidence 355556665555555566555555543 35677777543 21 1122223333444467765322 22344568999999
Q ss_pred HHhHhcCCCEEEEecCchh
Q psy2427 101 KFVRSVQCDAFIAVGGGSV 119 (660)
Q Consensus 101 ~~~~~~~~D~IIavGGGsv 119 (660)
..+.+.+++-|++|+|-..
T Consensus 80 ~~~~~~Gi~~iL~l~GD~~ 98 (274)
T cd00537 80 LGAHALGIRNILALRGDPP 98 (274)
T ss_pred HHHHHCCCCeEEEeCCCCC
Confidence 9999999999999987544
No 406
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=36.25 E-value=3.3e+02 Score=27.26 Aligned_cols=86 Identities=14% Similarity=0.118 Sum_probs=53.3
Q ss_pred HHHHHHHh-cCCCEEEEEECcc-cc-ccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh--cCCCEEEEe
Q psy2427 40 EVGMDMVN-MKAQRVCVMTDPH-LS-KLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS--VQCDAFIAV 114 (660)
Q Consensus 40 ~l~~~l~~-~g~~r~liVtd~~-~~-~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~IIav 114 (660)
.+.++|.+ .|.++++++.++. .. .....+-+.+.+++.++...... .+.+.+...+.++.+.+ .++|+|++.
T Consensus 114 ~~~~~l~~~~g~~~i~~i~g~~~~~~~~~r~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~aI~~~ 190 (271)
T cd06312 114 AAGERLAELKGGKNVLCVIHEPGNVTLEDRCAGFADGLGGAGITEEVIE---TGADPTEVASRIAAYLRANPDVDAVLTL 190 (271)
T ss_pred HHHHHHHHhcCCCeEEEEecCCCCccHHHHHHHHHHHHHhcCceeeEee---cCCCHHHHHHHHHHHHHhCCCccEEEEe
Confidence 36677777 7888999887632 11 11233556777777776543221 23344445555544432 357999999
Q ss_pred cCchhhhHHHHHHh
Q psy2427 115 GGGSVIDTCKAANL 128 (660)
Q Consensus 115 GGGsviD~AK~~a~ 128 (660)
++..+.-+.+++..
T Consensus 191 ~d~~a~g~~~al~~ 204 (271)
T cd06312 191 GAPSAAPAAKALKQ 204 (271)
T ss_pred CCccchHHHHHHHh
Confidence 99988888876653
No 407
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=36.22 E-value=57 Score=31.23 Aligned_cols=53 Identities=21% Similarity=0.377 Sum_probs=32.8
Q ss_pred CeEEEEeCcccCCCHHHHHHHHHHh-HhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCc
Q psy2427 79 VKFELFDKVRVEPTGDSFLEATKFV-RSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKP 157 (660)
Q Consensus 79 i~~~~~~~~~~~p~~~~v~~~~~~~-~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP 157 (660)
+++.++ +.+.++..+.++.+ ...++|+||+=|| +|+.+..... +|
T Consensus 10 ~~i~v~-----~~~~e~~v~~a~~~~~~~g~dViIsRG~-----ta~~lr~~~~------------------------iP 55 (176)
T PF06506_consen 10 AEIDVI-----EASLEEAVEEARQLLESEGADVIISRGG-----TAELLRKHVS------------------------IP 55 (176)
T ss_dssp SEEEEE-----E--HHHHHHHHHHHHTTTT-SEEEEEHH-----HHHHHHCC-S------------------------S-
T ss_pred ceEEEE-----EecHHHHHHHHHHhhHhcCCeEEEECCH-----HHHHHHHhCC------------------------CC
Confidence 455554 45677777777777 7889999999887 5666654332 89
Q ss_pred EEEEcCCC
Q psy2427 158 LIAIPTTS 165 (660)
Q Consensus 158 ~i~IPTt~ 165 (660)
+|.||.|.
T Consensus 56 VV~I~~s~ 63 (176)
T PF06506_consen 56 VVEIPISG 63 (176)
T ss_dssp EEEE---H
T ss_pred EEEECCCH
Confidence 99999985
No 408
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=36.18 E-value=2e+02 Score=28.93 Aligned_cols=49 Identities=14% Similarity=0.182 Sum_probs=36.0
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
..+.+.+.+++.|+++.++.. .-+.+.-.+..+.+...++|.||-.+..
T Consensus 17 ~~~~~~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 65 (273)
T cd06309 17 ETKSIKDAAEKRGFDLKFADA---QQKQENQISAIRSFIAQGVDVIILAPVV 65 (273)
T ss_pred HHHHHHHHHHhcCCEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 457788888889999887643 2255566677777888899999876543
No 409
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=36.03 E-value=87 Score=25.55 Aligned_cols=25 Identities=12% Similarity=0.082 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHhHhcCCCEEEEe
Q psy2427 90 EPTGDSFLEATKFVRSVQCDAFIAV 114 (660)
Q Consensus 90 ~p~~~~v~~~~~~~~~~~~D~IIav 114 (660)
+-..+.++++.+.+++.++|.||+|
T Consensus 25 ~d~d~Al~eM~e~A~~lGAnAVVGv 49 (74)
T TIGR03884 25 DNVDEIVENLREKVKAKGGMGLIAF 49 (74)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 4446788999999999999999997
No 410
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=36.00 E-value=83 Score=36.30 Aligned_cols=44 Identities=7% Similarity=-0.035 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEE
Q psy2427 37 VTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE 82 (660)
Q Consensus 37 ~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~ 82 (660)
.++++.+.|.+ .+|++||.|......+..+.+.+..++.|+.+.
T Consensus 195 ~i~~~~~~L~~--A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~ 238 (572)
T PRK08979 195 QIKRGLQALLA--AKKPVLYVGGGAIISGADKQILQLAEKLNLPVV 238 (572)
T ss_pred HHHHHHHHHHh--CCCCEEEECCCccccChHHHHHHHHHHhCCCEE
Confidence 35555555553 589999999998766666788888888898766
No 411
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=35.98 E-value=2.6e+02 Score=25.47 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhHhcCC-CEEEEecCch
Q psy2427 93 GDSFLEATKFVRSVQC-DAFIAVGGGS 118 (660)
Q Consensus 93 ~~~v~~~~~~~~~~~~-D~IIavGGGs 118 (660)
.+.+.++.+.+++.+. +..|-+||..
T Consensus 67 ~~~~~~~~~~L~~~g~~~i~vivGG~~ 93 (132)
T TIGR00640 67 LTLVPALRKELDKLGRPDILVVVGGVI 93 (132)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 4444444444444443 3333344433
No 412
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=35.95 E-value=4.3e+02 Score=27.25 Aligned_cols=49 Identities=12% Similarity=0.118 Sum_probs=35.4
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
..+.+.+.+.+.|+.+.++.. +.+.+...+..+.+...++|.||-++..
T Consensus 74 ~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdGiI~~~~~ 122 (327)
T PRK10423 74 LVRGVERSCFERGYSLVLCNT---EGDEQRMNRNLETLMQKRVDGLLLLCTE 122 (327)
T ss_pred HHHHHHHHHHHcCCEEEEEeC---CCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 457778888889988776542 2344555577777888899999988754
No 413
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=35.67 E-value=1.2e+02 Score=35.08 Aligned_cols=43 Identities=7% Similarity=0.077 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEE
Q psy2427 38 TREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE 82 (660)
Q Consensus 38 ~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~ 82 (660)
++++.+.|.+ .+|++||.|..+...+..+.+.+..++.|+.+.
T Consensus 205 i~~~~~~L~~--A~rPvIl~G~g~~~~~a~~~l~~lae~~~~pv~ 247 (571)
T PRK07710 205 IRKLVQAVSV--AKKPVILAGAGVLHAKASKELTSYAEQQEIPVV 247 (571)
T ss_pred HHHHHHHHHh--CCCCEEEECCCcCccchHHHHHHHHHHhCCCEE
Confidence 4455554443 489999999887655556778877777888766
No 414
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=35.56 E-value=3.2e+02 Score=27.29 Aligned_cols=86 Identities=13% Similarity=0.020 Sum_probs=52.6
Q ss_pred HHHHHHHHhc--CCCEEEEEECccccc--cchHHHHHHHHHhCC-CeEEEEeCcccCCCHHHHHHHHHHhHhc--CCCEE
Q psy2427 39 REVGMDMVNM--KAQRVCVMTDPHLSK--LAPVKATLDSLTRHG-VKFELFDKVRVEPTGDSFLEATKFVRSV--QCDAF 111 (660)
Q Consensus 39 ~~l~~~l~~~--g~~r~liVtd~~~~~--~~~~~~i~~~L~~~g-i~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~D~I 111 (660)
..+.+++.+. |.+++.++.+..... .....-+.+.+++.+ +.+.. ....+.+.+...+.++.+.+. ++|+|
T Consensus 112 ~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~i 189 (272)
T cd06300 112 KQGAEWLVKELGGKGNVLVVRGLAGHPVDEDRYAGAKEVLKEYPGIKIVG--EVYGDWDQAVAQKAVADFLASNPDVDGI 189 (272)
T ss_pred HHHHHHHHHHcCCCceEEEEECCCCCcchHHHHHHHHHHHHHCCCcEEEe--ecCCCCCHHHHHHHHHHHHHhCCCcCEE
Confidence 3456666665 778899887532111 112344677777776 76542 122344555555566655443 46999
Q ss_pred EEecCchhhhHHHHHH
Q psy2427 112 IAVGGGSVIDTCKAAN 127 (660)
Q Consensus 112 IavGGGsviD~AK~~a 127 (660)
++.+.. ++-+.+++.
T Consensus 190 ~~~~d~-A~g~~~al~ 204 (272)
T cd06300 190 WTQGGD-AVGAVQAFE 204 (272)
T ss_pred EecCCC-cHHHHHHHH
Confidence 999888 888888764
No 415
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=35.51 E-value=1.9e+02 Score=28.79 Aligned_cols=88 Identities=14% Similarity=0.218 Sum_probs=49.5
Q ss_pred HHHHHHHHhcCCCEEEEEECccc-ccc--chHHHHHHHHHhCCCeEEEEeCcccCCC-HHHHHHHHHHhHhc-CCCEEEE
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHL-SKL--APVKATLDSLTRHGVKFELFDKVRVEPT-GDSFLEATKFVRSV-QCDAFIA 113 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~-~~~--~~~~~i~~~L~~~gi~~~~~~~~~~~p~-~~~v~~~~~~~~~~-~~D~IIa 113 (660)
..+.++|.+.|.++++++.+..- ... ...+-+.+.|++.++.+.... ....-+ .+..+.+.+.+.+. ++|+|++
T Consensus 101 ~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~~ 179 (265)
T cd06291 101 RLAAEELIERGCKHIAHIGGPNNTVSPTNLRYEGFLDVLKENGLEVRIIE-IQENFDDAEKKEEIKELLEEYPDIDGIFA 179 (265)
T ss_pred HHHHHHHHHcCCcEEEEEccCcccccchHHHHHHHHHHHHHcCCCCChhe-eeccccchHHHHHHHHHHhCCCCCCEEEE
Confidence 34566777779899999986543 222 122446778887777643211 111111 22344444444443 4689999
Q ss_pred ecCchhhhHHHHHH
Q psy2427 114 VGGGSVIDTCKAAN 127 (660)
Q Consensus 114 vGGGsviD~AK~~a 127 (660)
.+...++-+.+++.
T Consensus 180 ~~d~~a~~~~~al~ 193 (265)
T cd06291 180 SNDLTAILVLKEAQ 193 (265)
T ss_pred CChHHHHHHHHHHH
Confidence 87776665555553
No 416
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=35.51 E-value=1.9e+02 Score=28.80 Aligned_cols=88 Identities=17% Similarity=0.175 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCCEEEEEECcccccc--chHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHH-hHh-cCCCEEEEe
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKL--APVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKF-VRS-VQCDAFIAV 114 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~--~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~-~~~-~~~D~IIav 114 (660)
..+.+++.+.|.+++.++++...... ...+-+.+.+++.|+.+..+.....+.+.+...+..+. +.. .++|+|++-
T Consensus 107 ~~a~~~l~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 186 (270)
T cd01545 107 REMTRHLIDLGHRRIAFIAGPPDHRASAERLEGYRDALAEAGLPLDPELVAQGDFTFESGLEAAEALLALPDRPTAIFAS 186 (270)
T ss_pred HHHHHHHHHCCCceEEEEeCCCCchhHHHHHHHHHHHHHHcCCCCChhhEEeCCCChhhHHHHHHHHHhCCCCCCEEEEc
Confidence 34667777788899999986542221 12244666777777654110001123333333333333 322 457999976
Q ss_pred cCchhhhHHHHH
Q psy2427 115 GGGSVIDTCKAA 126 (660)
Q Consensus 115 GGGsviD~AK~~ 126 (660)
....++-+.+++
T Consensus 187 ~d~~a~~~~~~~ 198 (270)
T cd01545 187 NDDMAAGVLAVA 198 (270)
T ss_pred CcHHHHHHHHHH
Confidence 554444444444
No 417
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=35.36 E-value=1.8e+02 Score=29.12 Aligned_cols=89 Identities=13% Similarity=0.111 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCCCEEEEEECcccccc--chHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHH-HHhHh-cCCCEEEEe
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKL--APVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEAT-KFVRS-VQCDAFIAV 114 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~--~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~-~~~~~-~~~D~IIav 114 (660)
..+.+++.+.|.++++++++...... ...+-+.+.+++.++......-...+-+.+.....+ +.++. .++|+|++.
T Consensus 114 ~~~a~~l~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 193 (275)
T cd06295 114 RLATEHLLARGRRRIAFLGGPQDMPEGEERLEGYREALAEAGLPLDPRLVAPGDFTEESGRAAMRALLERGPDFDAVFAA 193 (275)
T ss_pred HHHHHHHHHCCCCeEEEEcCCCCcchhHHHHHHHHHHHHHcCCCCChhhEEeccCCHHHHHHHHHHHHhCCCCCCEEEEC
Confidence 44667777788889999987542111 123446777777775422110111233333333333 33333 357999999
Q ss_pred cCchhhhHHHHHH
Q psy2427 115 GGGSVIDTCKAAN 127 (660)
Q Consensus 115 GGGsviD~AK~~a 127 (660)
++.....+.+++.
T Consensus 194 ~~~~a~g~~~~l~ 206 (275)
T cd06295 194 SDLMALGALRALR 206 (275)
T ss_pred CcHHHHHHHHHHH
Confidence 8877666655553
No 418
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=35.36 E-value=99 Score=35.64 Aligned_cols=44 Identities=5% Similarity=0.043 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEE
Q psy2427 37 VTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE 82 (660)
Q Consensus 37 ~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~ 82 (660)
.++++.+.|.+ .+|++|+.|......+..+.+.+..++.|+.+.
T Consensus 199 ~i~~~~~~L~~--A~rPvil~G~g~~~~~a~~~l~~lae~l~~pv~ 242 (566)
T PRK07282 199 QIKKILKQLSK--AKKPVILAGGGINYAEAATELNAFAERYQIPVV 242 (566)
T ss_pred HHHHHHHHHHc--CCCcEEEECCCcCcccHHHHHHHHHHHhCCCEE
Confidence 35556665544 489999999988766666888888888888766
No 419
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=35.33 E-value=55 Score=34.12 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=39.7
Q ss_pred chHHHHHHHHHhCCCeEEEEeCccc------CCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 65 APVKATLDSLTRHGVKFELFDKVRV------EPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 65 ~~~~~i~~~L~~~gi~~~~~~~~~~------~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
..+++..+.|++.|+++.+...+.. .++.+.++++.+.+.+-.+|.|+++-||-
T Consensus 14 ~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~ags~~~Ra~dL~~a~~d~~i~aI~~~rGGy 73 (284)
T PF02016_consen 14 ERLERGIKRLESWGFKVVVGPHVFKRDGYLAGSDEERAEDLNEAFADPEIDAIWCARGGY 73 (284)
T ss_dssp HHHHHHHHHHHHTTEEEEE-TTTTS-BTTBSS-HHHHHHHHHHHHHSTTEEEEEES--SS
T ss_pred HHHHHHHHHHHhCCCEEEECCcccccCCCcCCCHHHHHHHHHHHhcCCCCCEEEEeeccc
Confidence 3568888999999999887654433 35577888888888988899999998884
No 420
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=35.05 E-value=3e+02 Score=30.80 Aligned_cols=73 Identities=18% Similarity=0.201 Sum_probs=42.4
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcc----------------cCCCHHHHHHHHHHhHhcCCCEEEEe
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR----------------VEPTGDSFLEATKFVRSVQCDAFIAV 114 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~----------------~~p~~~~v~~~~~~~~~~~~D~IIav 114 (660)
+++=||.+..++.. -++++++.|+..|+++.++.++. ...+++++.++. ++.+-|.+
T Consensus 169 ~~VNiIgg~~~~~~-D~~elk~lL~~~Gl~v~~lpd~s~~ld~~l~~~~~~~~~gg~t~eei~~~~------~A~lniv~ 241 (455)
T PRK14476 169 RQVNVLPGSHLTPG-DIEELREIIEAFGLEPIILPDLSGSLDGHLPDDWTPTTLGGTTLEEIRELG------RSAATIAI 241 (455)
T ss_pred CcEEEECCCCCCcc-cHHHHHHHHHHcCCceEEecCccccccCCCCCcccccCCCCCCHHHHHhhc------cCcEEEEe
Confidence 45777766554333 34888888888898887654332 234455544432 34555556
Q ss_pred cCchhhhHHHHHHhHhc
Q psy2427 115 GGGSVIDTCKAANLYYC 131 (660)
Q Consensus 115 GGGsviD~AK~~a~~~~ 131 (660)
| -+...+|+.+...++
T Consensus 242 ~-~~~~~~a~~Lee~~G 257 (455)
T PRK14476 242 G-ESMRKAAEALEARTG 257 (455)
T ss_pred c-HHHHHHHHHHHHHhC
Confidence 3 345566666655554
No 421
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=34.99 E-value=86 Score=36.19 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEE
Q psy2427 37 VTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE 82 (660)
Q Consensus 37 ~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~ 82 (660)
.++++.+.|. +.+|++||.|..+...+..+.+.+..+..|+.+.
T Consensus 203 ~~~~~~~~L~--~A~rPvIl~G~g~~~~~a~~~l~~lae~~~~PV~ 246 (570)
T PRK06725 203 KLREVAKAIS--KAKRPLLYIGGGVIHSGGSEELIEFARENRIPVV 246 (570)
T ss_pred HHHHHHHHHH--cCCCcEEEECCCccccchHHHHHHHHHHhCCCEE
Confidence 3555555554 3489999999998766666888888888888766
No 422
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=34.92 E-value=2.3e+02 Score=28.28 Aligned_cols=88 Identities=10% Similarity=-0.051 Sum_probs=48.6
Q ss_pred HHHHHHHHhcCCCEEEEEECcccccc--chHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh--cCCCEEEEe
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKL--APVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS--VQCDAFIAV 114 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~--~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~IIav 114 (660)
..+.++|.+.|.+|+.++++...... ...+-+++.+++.++..........+.+.+...+.++.+.+ ..+|+|++-
T Consensus 105 ~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 184 (269)
T cd06293 105 RLATRHLARAGHRRIAFVGGPDALISARERYAGYREALAEAHIPEVPEYVCFGDYTREFGRAAAAQLLARGDPPTAIFAA 184 (269)
T ss_pred HHHHHHHHHCCCceEEEEecCcccccHHHHHHHHHHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCCEEEEc
Confidence 44667777889999999975432111 12244677787777643211111123344444444444432 347999997
Q ss_pred cCchhhhHHHHH
Q psy2427 115 GGGSVIDTCKAA 126 (660)
Q Consensus 115 GGGsviD~AK~~ 126 (660)
....+.-+-+++
T Consensus 185 ~d~~a~g~~~al 196 (269)
T cd06293 185 SDEIAIGLLEVL 196 (269)
T ss_pred CcHHHHHHHHHH
Confidence 665554444444
No 423
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=34.90 E-value=88 Score=36.22 Aligned_cols=43 Identities=0% Similarity=-0.095 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEE
Q psy2427 38 TREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE 82 (660)
Q Consensus 38 ~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~ 82 (660)
++++.+.|. +.+|++||.|......+..+.+.+..+..|+.+.
T Consensus 207 v~~a~~~L~--~AkrPvil~G~g~~~~~a~~~l~~lae~lg~PV~ 249 (585)
T CHL00099 207 IEQAAKLIL--QSSQPLLYVGGGAIISDAHQEITELAELYKIPVT 249 (585)
T ss_pred HHHHHHHHH--cCCCcEEEECCCCchhchHHHHHHHHHHHCCCEE
Confidence 455555554 3589999999998766666888888888898766
No 424
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=34.83 E-value=3.2e+02 Score=25.43 Aligned_cols=65 Identities=11% Similarity=-0.009 Sum_probs=42.7
Q ss_pred HHHHHHHHHhCCCe-EEEEeCcc-cCCCHH-HHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhc
Q psy2427 67 VKATLDSLTRHGVK-FELFDKVR-VEPTGD-SFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYC 131 (660)
Q Consensus 67 ~~~i~~~L~~~gi~-~~~~~~~~-~~p~~~-~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~ 131 (660)
.+.+.+.|...|.+ +..++.-. .+.+.+ ....+.+.+++.++|.|+.=..-.-.|++-.+|..+.
T Consensus 47 ~~~l~~~l~~~G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~ 114 (164)
T PF01012_consen 47 AEALRKALAKYGADKVYHIDDPALAEYDPEAYADALAELIKEEGPDLVLFGSTSFGRDLAPRLAARLG 114 (164)
T ss_dssp HHHHHHHHHSTTESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHHHT
T ss_pred HHHHhhhhhhcCCcEEEEecCccccccCHHHHHHHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHHHhC
Confidence 36677788877875 44444322 234444 5556666777789998888777777888888888886
No 425
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=34.77 E-value=2.6e+02 Score=29.72 Aligned_cols=70 Identities=10% Similarity=0.088 Sum_probs=39.9
Q ss_pred HHHHHHhc-CCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcc-cCCC-----HHHHHHHHHHhHhcCCCEEEE
Q psy2427 41 VGMDMVNM-KAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR-VEPT-----GDSFLEATKFVRSVQCDAFIA 113 (660)
Q Consensus 41 l~~~l~~~-g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~-~~p~-----~~~v~~~~~~~~~~~~D~IIa 113 (660)
+-..+++. +..-.+|+|+.... ..+.+.+.+ ++...+.-.+. ...+ ...+.++.+.+++.++|+|+.
T Consensus 19 ~~~~l~~~~~~~~~~~~tg~h~~---~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiv~~ 92 (365)
T TIGR00236 19 LIRALKKYPEIDSYVIVTAQHRE---MLDQVLDLF---HLPPDYDLNIMSPGQTLGEITSNMLEGLEELLLEEKPDIVLV 92 (365)
T ss_pred HHHHHhhCCCCCEEEEEeCCCHH---HHHHHHHhc---CCCCCeeeecCCCCCCHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 33344432 34567999998852 235555444 54321111111 1122 345577888889999999999
Q ss_pred ecC
Q psy2427 114 VGG 116 (660)
Q Consensus 114 vGG 116 (660)
.|-
T Consensus 93 ~gd 95 (365)
T TIGR00236 93 QGD 95 (365)
T ss_pred eCC
Confidence 974
No 426
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=34.66 E-value=2e+02 Score=28.21 Aligned_cols=83 Identities=16% Similarity=0.127 Sum_probs=50.0
Q ss_pred ECcChHHH-HHHHHHhc--CCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHH-HHHHHHHhHhcCC
Q psy2427 33 IGPGVTRE-VGMDMVNM--KAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDS-FLEATKFVRSVQC 108 (660)
Q Consensus 33 ~G~g~~~~-l~~~l~~~--g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~-v~~~~~~~~~~~~ 108 (660)
.|.|..-+ +-+.+.+- +..-++||+++.- . .+.+..++.|+.+..++... .++.+. -.++.+.+++.++
T Consensus 9 sg~gs~~~~ll~~~~~~~~~~~I~~vvs~~~~--~----~~~~~a~~~gIp~~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 81 (200)
T PRK05647 9 SGNGSNLQAIIDACAAGQLPAEIVAVISDRPD--A----YGLERAEAAGIPTFVLDHKD-FPSREAFDAALVEALDAYQP 81 (200)
T ss_pred cCCChhHHHHHHHHHcCCCCcEEEEEEecCcc--c----hHHHHHHHcCCCEEEECccc-cCchhHhHHHHHHHHHHhCc
Confidence 45565544 55555443 2334556777641 1 24556677899987654321 222222 3356777888999
Q ss_pred CEEEEecCchhhhH
Q psy2427 109 DAFIAVGGGSVIDT 122 (660)
Q Consensus 109 D~IIavGGGsviD~ 122 (660)
|.||.+|=+..+.-
T Consensus 82 D~iv~~~~~~ii~~ 95 (200)
T PRK05647 82 DLVVLAGFMRILGP 95 (200)
T ss_pred CEEEhHHhhhhCCH
Confidence 99999998877653
No 427
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=34.52 E-value=91 Score=35.87 Aligned_cols=44 Identities=5% Similarity=0.006 Sum_probs=32.2
Q ss_pred hHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEE
Q psy2427 37 VTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE 82 (660)
Q Consensus 37 ~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~ 82 (660)
.++++.+.|.+ .+|++||.|......+..+.+.+..++.|+.+.
T Consensus 196 ~i~~~a~~L~~--AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~ 239 (561)
T PRK06048 196 QIKRAAELIMK--AERPIIYAGGGVISSNASEELVELAETIPAPVT 239 (561)
T ss_pred HHHHHHHHHHh--CCCCEEEECCCcccccHHHHHHHHHHHhCCCEE
Confidence 35555555544 489999999988765566778887878888766
No 428
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=34.46 E-value=3.4e+02 Score=27.06 Aligned_cols=51 Identities=12% Similarity=0.007 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
....+.+.+++.|+.+.++.... .-+.+...+..+.+...++|.||..+..
T Consensus 17 ~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~i~~l~~~~vdgvii~~~~ 67 (273)
T cd06310 17 VKAGAEAAAKELGVKVTFQGPAS-ETDVAGQVNLLENAIARGPDAILLAPTD 67 (273)
T ss_pred HHHHHHHHHHHcCCEEEEecCcc-CCCHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 44667788888899887653211 2245666677777777899999987643
No 429
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=34.40 E-value=91 Score=35.81 Aligned_cols=76 Identities=14% Similarity=0.158 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEE-EeCc----ccCCCHHHH------HHHHHHhHhc
Q psy2427 38 TREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFEL-FDKV----RVEPTGDSF------LEATKFVRSV 106 (660)
Q Consensus 38 ~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~-~~~~----~~~p~~~~v------~~~~~~~~~~ 106 (660)
++++.+.|.+ .+|++||.|......+..+.+.+..+..|+.+.. +.+- +.+|..-.+ ....+.++
T Consensus 191 i~~~~~~L~~--AkrPvi~~G~g~~~~~a~~~l~~lae~l~~pv~tt~~~kg~~~e~hp~~~G~~g~~~~~~~~~~l~-- 266 (558)
T TIGR00118 191 IKKAAELINL--AKKPVILVGGGVIIAGASEELKELAERIQIPVTTTLMGLGSFPEDHPLSLGMLGMHGTKTANLAVH-- 266 (558)
T ss_pred HHHHHHHHHh--CCCcEEEECCCccccchHHHHHHHHHHhCCCEEEccccCCCCCCCCccccCCCCCCCCHHHHHHHH--
Confidence 5666666654 4899999998887655667888888888887663 2211 122221110 11222233
Q ss_pred CCCEEEEecCc
Q psy2427 107 QCDAFIAVGGG 117 (660)
Q Consensus 107 ~~D~IIavGGG 117 (660)
++|+||+||.-
T Consensus 267 ~aD~vl~lG~~ 277 (558)
T TIGR00118 267 ECDLIIAVGAR 277 (558)
T ss_pred hCCEEEEECCC
Confidence 58999999954
No 430
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=34.38 E-value=58 Score=27.02 Aligned_cols=35 Identities=14% Similarity=0.221 Sum_probs=28.6
Q ss_pred EEEEEECccccccchH-HHHHHHHHhCCCeEEEEeC
Q psy2427 52 RVCVMTDPHLSKLAPV-KATLDSLTRHGVKFELFDK 86 (660)
Q Consensus 52 r~liVtd~~~~~~~~~-~~i~~~L~~~gi~~~~~~~ 86 (660)
|++++|+.++..+-.+ .++++.+++.|+++.....
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~ 36 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIEVEVSAG 36 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCceEEEEe
Confidence 6899999987666566 8999999999988776544
No 431
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=34.20 E-value=1.4e+02 Score=26.06 Aligned_cols=34 Identities=9% Similarity=0.122 Sum_probs=28.8
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEE
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELF 84 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~ 84 (660)
+++++||..+...+-.+.+.+++.+..|.++.+.
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~~aA~~kg~~~~I~ 35 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMKKAAESKGKDVTIE 35 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHhCCCceEEE
Confidence 6899999988766557899999999999998864
No 432
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=34.20 E-value=1.6e+02 Score=30.90 Aligned_cols=87 Identities=10% Similarity=0.012 Sum_probs=49.4
Q ss_pred HHHHHHHhcCCCEEEEEECccccc--cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh--cCCCEEEEec
Q psy2427 40 EVGMDMVNMKAQRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS--VQCDAFIAVG 115 (660)
Q Consensus 40 ~l~~~l~~~g~~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~IIavG 115 (660)
.+.++|.+.|.+|+.+|.+..-.. ....+-+++.+++.|+.+........+.+.+...++.+.+.+ ..+|+|++..
T Consensus 166 ~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~gi~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~n 245 (343)
T PRK10727 166 LATRHLIQQGHTRIGYLCSNHSISDAEDRLQGYYDALAESGIPANDRLVTFGEPDESGGEQAMTELLGRGRNFTAVACYN 245 (343)
T ss_pred HHHHHHHHCCCccEEEEeCCccccchHHHHHHHHHHHHHCCCCCChhhEEeCCCChhHHHHHHHHHHhCCCCCCEEEEcC
Confidence 355677778989999998653211 112244667788888753210001123444443444444333 3479999987
Q ss_pred CchhhhHHHHH
Q psy2427 116 GGSVIDTCKAA 126 (660)
Q Consensus 116 GGsviD~AK~~ 126 (660)
...++-+.+++
T Consensus 246 D~~A~g~~~al 256 (343)
T PRK10727 246 DSMAAGAMGVL 256 (343)
T ss_pred cHHHHHHHHHH
Confidence 77776665554
No 433
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=34.20 E-value=3.3e+02 Score=27.19 Aligned_cols=86 Identities=10% Similarity=0.035 Sum_probs=50.9
Q ss_pred HHHHHHHhc--CCCEEEEEECcccccc--chHHHHHHHHHhC-CCeEEEEeCcccCCCHHHH-HHHHHHhHh-cCCCEEE
Q psy2427 40 EVGMDMVNM--KAQRVCVMTDPHLSKL--APVKATLDSLTRH-GVKFELFDKVRVEPTGDSF-LEATKFVRS-VQCDAFI 112 (660)
Q Consensus 40 ~l~~~l~~~--g~~r~liVtd~~~~~~--~~~~~i~~~L~~~-gi~~~~~~~~~~~p~~~~v-~~~~~~~~~-~~~D~II 112 (660)
.+.+++.+. |.+|++++.+...... ...+-+.+.+++. |+++... ...+-+.+.. ..+.+.+++ .++|+|+
T Consensus 110 ~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~R~~g~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~aI~ 187 (270)
T cd06308 110 QAGEYIANLLPGKGNILEIWGLEGSSPAIERHDGFKEALSKYPKIKIVAQ--QDGDWLKEKAEEKMEELLQANPDIDLVY 187 (270)
T ss_pred HHHHHHHHHcCCCceEEEEECCCCCchHHHHHHHHHHHHHHCCCCEEEEe--cCCCccHHHHHHHHHHHHHhCCCCcEEE
Confidence 455666664 7789999976432211 1235567788877 7764321 2223333333 334444433 3589999
Q ss_pred EecCchhhhHHHHHH
Q psy2427 113 AVGGGSVIDTCKAAN 127 (660)
Q Consensus 113 avGGGsviD~AK~~a 127 (660)
+.+...++-+.+++.
T Consensus 188 ~~~d~~a~g~~~al~ 202 (270)
T cd06308 188 AHNDPMALGAYLAAK 202 (270)
T ss_pred eCCcHHHHHHHHHHH
Confidence 998888887777764
No 434
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=34.09 E-value=2.3e+02 Score=25.26 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=13.4
Q ss_pred CCCEEEEecC-chhhhHHHHH
Q psy2427 107 QCDAFIAVGG-GSVIDTCKAA 126 (660)
Q Consensus 107 ~~D~IIavGG-GsviD~AK~~ 126 (660)
+.|.||++|| |++-.+.-.+
T Consensus 49 ~~d~vvv~GGDGTi~~vvn~l 69 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVLNAL 69 (124)
T ss_pred cCCEEEEEccccHHHHHHHHH
Confidence 4689999999 5555554333
No 435
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=34.08 E-value=5.4e+02 Score=27.72 Aligned_cols=84 Identities=13% Similarity=0.156 Sum_probs=45.4
Q ss_pred HHHHHHhc-CCCEEEEEECccccccchHHHHHHHHHhCCCeE--EEEeCccc--CCC-----HHHHHHHHHHhHhcCCCE
Q psy2427 41 VGMDMVNM-KAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKF--ELFDKVRV--EPT-----GDSFLEATKFVRSVQCDA 110 (660)
Q Consensus 41 l~~~l~~~-g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~--~~~~~~~~--~p~-----~~~v~~~~~~~~~~~~D~ 110 (660)
+-..+++. +.+-.+|+|++..... + ......+.+.|+.+ .+.-.+.. ..+ ...+.++.+.+++.++|+
T Consensus 19 v~~~l~~~~~~~~~lv~tGqH~~~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pd~ 96 (365)
T TIGR03568 19 LLKALQDDPDLELQLIVTGMHLSPE-Y-GNTVNEIEKDGFDIDEKIEILLDSDSNAGMAKSMGLTIIGFSDAFERLKPDL 96 (365)
T ss_pred HHHHHhcCCCCcEEEEEeCCCCChh-h-ccHHHHHHHcCCCCCCccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCCCE
Confidence 33444442 4567889999886421 1 11222233333322 11111211 222 335577778888999999
Q ss_pred EEEec-CchhhhHHHHH
Q psy2427 111 FIAVG-GGSVIDTCKAA 126 (660)
Q Consensus 111 IIavG-GGsviD~AK~~ 126 (660)
||..| +.+++..|-++
T Consensus 97 vlv~GD~~~~la~alaA 113 (365)
T TIGR03568 97 VVVLGDRFEMLAAAIAA 113 (365)
T ss_pred EEEeCCchHHHHHHHHH
Confidence 99999 66666555433
No 436
>KOG2836|consensus
Probab=34.04 E-value=2.1e+02 Score=26.30 Aligned_cols=77 Identities=10% Similarity=0.160 Sum_probs=46.3
Q ss_pred ChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeC-cccCCCHHHHHHHHHHhH---hcCCC--
Q psy2427 36 GVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDK-VRVEPTGDSFLEATKFVR---SVQCD-- 109 (660)
Q Consensus 36 g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~-~~~~p~~~~v~~~~~~~~---~~~~D-- 109 (660)
-.++..-++|+++|..-++=|+++..... .|++.||.+.-+.- -+.-|+...++.=.+.+. ...++
T Consensus 28 aTln~fieELkKygvttvVRVCe~TYdt~--------~lek~GI~Vldw~f~dg~ppp~qvv~~w~~l~~~~f~e~p~~c 99 (173)
T KOG2836|consen 28 ATLNKFIEELKKYGVTTVVRVCEPTYDTT--------PLEKEGITVLDWPFDDGAPPPNQVVDDWLSLVKTKFREEPGCC 99 (173)
T ss_pred hhHHHHHHHHHhcCCeEEEEecccccCCc--------hhhhcCceEeecccccCCCCchHHHHHHHHHHHHHHhhCCCCe
Confidence 45788889999999888888999876544 46778998874322 222334444444333322 33455
Q ss_pred ----EEEEecCchhh
Q psy2427 110 ----AFIAVGGGSVI 120 (660)
Q Consensus 110 ----~IIavGGGsvi 120 (660)
||-|+|-.-|+
T Consensus 100 vavhcvaglgrapvl 114 (173)
T KOG2836|consen 100 VAVHCVAGLGRAPVL 114 (173)
T ss_pred EEEEeecccCcchHH
Confidence 44455554443
No 437
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=34.04 E-value=1.7e+02 Score=32.58 Aligned_cols=84 Identities=12% Similarity=0.128 Sum_probs=48.0
Q ss_pred CcChH---HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCE
Q psy2427 34 GPGVT---REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDA 110 (660)
Q Consensus 34 G~g~~---~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~ 110 (660)
|.|-. ..|+.++++.| +|+++|+....+. +.++++...-+..++.+.. ..........+.+.++.++..++|.
T Consensus 110 GvGKTTtaaKLA~~l~~~G-~kV~lV~~D~~R~-aA~eQLk~~a~~~~vp~~~--~~~~~dp~~i~~~~l~~~~~~~~Dv 185 (429)
T TIGR01425 110 GSGKTTTCTKLAYYYQRKG-FKPCLVCADTFRA-GAFDQLKQNATKARIPFYG--SYTESDPVKIASEGVEKFKKENFDI 185 (429)
T ss_pred CCCHHHHHHHHHHHHHHCC-CCEEEEcCcccch-hHHHHHHHHhhccCCeEEe--ecCCCCHHHHHHHHHHHHHhCCCCE
Confidence 56644 34666666667 6888886544332 4557776666666666532 2211223455667788888778896
Q ss_pred EE-EecCchhhh
Q psy2427 111 FI-AVGGGSVID 121 (660)
Q Consensus 111 II-avGGGsviD 121 (660)
|| =-.|..-.|
T Consensus 186 ViIDTaGr~~~d 197 (429)
T TIGR01425 186 IIVDTSGRHKQE 197 (429)
T ss_pred EEEECCCCCcch
Confidence 65 333333333
No 438
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.81 E-value=2.7e+02 Score=27.70 Aligned_cols=49 Identities=14% Similarity=0.223 Sum_probs=33.1
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
+.+.+.+.+++.|+.+.++.. +...+....+.+.+...++|+||-++..
T Consensus 22 ~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~dgiii~~~~ 70 (270)
T cd06294 22 VLRGISAVANENGYDISLATG---KNEEELLEEVKKMIQQKRVDGFILLYSR 70 (270)
T ss_pred HHHHHHHHHHHCCCEEEEecC---CCcHHHHHHHHHHHHHcCcCEEEEecCc
Confidence 446677888888988775432 2234455666666677789999988643
No 439
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=33.70 E-value=1.2e+02 Score=35.04 Aligned_cols=45 Identities=16% Similarity=0.054 Sum_probs=32.2
Q ss_pred hHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEE
Q psy2427 37 VTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFEL 83 (660)
Q Consensus 37 ~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~ 83 (660)
.++++.+.|.+ .+|++||.|..+...+..+.+.+..+..|+.+..
T Consensus 202 ~i~~~~~~L~~--AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~~ 246 (578)
T PRK06112 202 RLAEAASLLAQ--AQRPVVVAGGGVHISGASAALAALQSLAGLPVAT 246 (578)
T ss_pred HHHHHHHHHHc--CCCcEEEECCCccccchHHHHHHHHHHhCCCEEE
Confidence 45555555544 4899999998876555567788888888988764
No 440
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=33.67 E-value=1.2e+02 Score=28.92 Aligned_cols=91 Identities=12% Similarity=0.141 Sum_probs=64.7
Q ss_pred ECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEE
Q psy2427 33 IGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFI 112 (660)
Q Consensus 33 ~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~II 112 (660)
-|..-...++..|++.+..-=+|++++.++...-.+.+.+.+.. -...+|++.-++.+...+.+.++...+ ++..|+
T Consensus 29 ~G~~ea~~~a~~L~~~~~~~D~VL~Spa~Ra~QTae~v~~~~~~--~~~~~~~~l~p~~d~~~~l~~l~~~~d-~v~~vl 105 (163)
T COG2062 29 RGRKEAELVAAWLAGQGVEPDLVLVSPAVRARQTAEIVAEHLGE--KKVEVFEELLPNGDPGTVLDYLEALGD-GVGSVL 105 (163)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEeChhHHHHHHHHHHHHhhCc--ccceeccccCCCCCHHHHHHHHHHhcc-cCceEE
Confidence 35555677899999988766678888887655444666666641 235678899999999999999998887 777888
Q ss_pred EecCch-hhhHHHHH
Q psy2427 113 AVGGGS-VIDTCKAA 126 (660)
Q Consensus 113 avGGGs-viD~AK~~ 126 (660)
=||=-. +-+++..+
T Consensus 106 lVgH~P~l~~l~~~L 120 (163)
T COG2062 106 LVGHNPLLEELALLL 120 (163)
T ss_pred EECCCccHHHHHHHH
Confidence 887543 33444433
No 441
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=33.63 E-value=2.3e+02 Score=29.44 Aligned_cols=90 Identities=10% Similarity=0.042 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcCCCEEEEEECccccc--cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhH-h-cCCCEEEE
Q psy2427 38 TREVGMDMVNMKAQRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVR-S-VQCDAFIA 113 (660)
Q Consensus 38 ~~~l~~~l~~~g~~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~-~-~~~D~IIa 113 (660)
...+.++|.+.|.+|+.+|.+..-.. ....+-+.+.+++.|+.+...-....+-+.+...+.++.+. . .++|+|++
T Consensus 162 ~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~ 241 (327)
T PRK10423 162 GDLATQYLIDKGYTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMQQLLALPLRPQAVFT 241 (327)
T ss_pred HHHHHHHHHHcCCCeEEEEeCCccccchHHHHHHHHHHHHHcCCCCCcceEEeCCCChHHHHHHHHHHhcCCCCCCEEEE
Confidence 45677888888999999997653211 11234467778888865321000111223333333444333 2 35799999
Q ss_pred ecCchhhhHHHHHH
Q psy2427 114 VGGGSVIDTCKAAN 127 (660)
Q Consensus 114 vGGGsviD~AK~~a 127 (660)
.+...++-+.+++.
T Consensus 242 ~~d~~A~g~~~~l~ 255 (327)
T PRK10423 242 GNDAMAVGVYQALY 255 (327)
T ss_pred cCcHHHHHHHHHHH
Confidence 88887776666553
No 442
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.52 E-value=4.3e+02 Score=26.21 Aligned_cols=142 Identities=11% Similarity=0.020 Sum_probs=0.0
Q ss_pred EEEEEC-ccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhc
Q psy2427 53 VCVMTD-PHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYC 131 (660)
Q Consensus 53 ~liVtd-~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~ 131 (660)
.+++-+ .+-+-.....-+.+.+++.|+.+.++.. +-..+.-.+..+.+...++|.||....-.--+. +.....
T Consensus 3 ~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~~dgiii~~~~~~~~~---~~~~~~ 76 (270)
T cd06296 3 GLVFPDLDSPWASEVLRGVEEAAAAAGYDVVLSES---GRRTSPERQWVERLSARRTDGVILVTPELTSAQ---RAALRR 76 (270)
T ss_pred EEEECCCCCccHHHHHHHHHHHHHHcCCeEEEecC---CCchHHHHHHHHHHHHcCCCEEEEecCCCChHH---HHHHhc
Q ss_pred CCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceeeeecCCCCccEEEEcCCcCCCCCHH
Q psy2427 132 DPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPER 211 (660)
Q Consensus 132 ~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~ 211 (660)
.+ +|+|.|=.....+..+..+..=+......-.......-..+.+++-.... +....
T Consensus 77 ~~----------------------ipvV~i~~~~~~~~~~~~v~~d~~~~~~~a~~~l~~~g~~~i~~i~~~~~-~~~~~ 133 (270)
T cd06296 77 TG----------------------IPFVVVDPAGDPDADVPSVGATNWAGGLAATEHLLELGHRRIGFITGPPD-LLCSR 133 (270)
T ss_pred CC----------------------CCEEEEecccCCCCCCCEEEeCcHHHHHHHHHHHHHcCCCcEEEEcCCCc-chhHH
Q ss_pred HHHHhhHHHHHH
Q psy2427 212 VTAYSGFDVFCH 223 (660)
Q Consensus 212 ~~~~g~~Dal~h 223 (660)
....|..+++.+
T Consensus 134 ~r~~gf~~~~~~ 145 (270)
T cd06296 134 ARLDGYRAALAE 145 (270)
T ss_pred HHHHHHHHHHHH
No 443
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.51 E-value=2.9e+02 Score=27.51 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=32.9
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG 116 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG 116 (660)
..+.+.+.+++.|+.+.+... +...+.-.++.+.+.+.++|.||-.+.
T Consensus 20 ~~~~i~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiii~~~ 67 (268)
T cd06277 20 IYRAIEEEAKKYGYNLILKFV---SDEDEEEFELPSFLEDGKVDGIILLGG 67 (268)
T ss_pred HHHHHHHHHHHcCCEEEEEeC---CCChHHHHHHHHHHHHCCCCEEEEeCC
Confidence 456778888888988776532 223344456666677889999998763
No 444
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=33.45 E-value=95 Score=35.82 Aligned_cols=44 Identities=7% Similarity=-0.043 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEE
Q psy2427 37 VTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE 82 (660)
Q Consensus 37 ~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~ 82 (660)
.++++.+.|.+ .+|++||.|..+...+..+++.+..+..|+.+.
T Consensus 195 ~i~~~~~~L~~--A~rPvil~G~g~~~~~a~~~l~~lae~~g~pv~ 238 (574)
T PRK06466 195 QIRKAVEMLLA--AKRPVIYSGGGVVLGNASALLTELAHLLNLPVT 238 (574)
T ss_pred HHHHHHHHHHh--CCCCEEEECCCccccChHHHHHHHHHHhCCCEE
Confidence 34555555554 489999999988765566888888888898866
No 445
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=33.26 E-value=76 Score=39.78 Aligned_cols=55 Identities=11% Similarity=0.251 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC
Q psy2427 92 TGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS 165 (660)
Q Consensus 92 ~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~ 165 (660)
+.+..+++.+.+++.+.|.+|-|||--.++.|..++.....- ...+++|.||-|.
T Consensus 181 ~ee~~~~~le~lkkl~Id~LVvIGGDgS~t~A~~LaEy~~~~-------------------g~~I~VIGIPKTI 235 (1328)
T PTZ00468 181 TEEQMRASLEICEKLKLHGLVVIGGDDSNTNAAVLAEYFKRN-------------------SSSTVVVGCPKTI 235 (1328)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhc-------------------CCCeeEEEEeEEE
Confidence 467889999999999999999999999998887776544311 0117899999884
No 446
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=33.22 E-value=1.9e+02 Score=28.70 Aligned_cols=85 Identities=13% Similarity=0.024 Sum_probs=49.9
Q ss_pred HHHHHHHHhcCCCEEEEEECccc--cccchHHHHHHHHHhCCCeEE---EEeCcccCCCHHHHHHHHHHhHh--cCCCEE
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHL--SKLAPVKATLDSLTRHGVKFE---LFDKVRVEPTGDSFLEATKFVRS--VQCDAF 111 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~--~~~~~~~~i~~~L~~~gi~~~---~~~~~~~~p~~~~v~~~~~~~~~--~~~D~I 111 (660)
..+.++|.+.|.+|++++.+... ......+-+.+.+++.|+++. ++. ...+.+...+..+.+.+ .++|.|
T Consensus 103 ~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~l~~~~~~~ai 179 (260)
T cd06286 103 YEALKYLIQKGYRKIAYCIGRKKSLNSQSRKKAYKDALEEYGLTPDEEWIFE---GCFTIEDGERIGHQLLKMKDRPDAI 179 (260)
T ss_pred HHHHHHHHHCCCceEEEEcCCcccchhHHHHHHHHHHHHHcCCCCChHheEe---CCCCHHHHHHHHHHHHcCCCCCCEE
Confidence 34667778889899999986532 111223456677888776532 222 12344444555554443 367999
Q ss_pred EEecCchhhhHHHHH
Q psy2427 112 IAVGGGSVIDTCKAA 126 (660)
Q Consensus 112 IavGGGsviD~AK~~ 126 (660)
++.....++-+-+++
T Consensus 180 ~~~~d~~a~~~~~~l 194 (260)
T cd06286 180 FTGSDEVAAGIITEA 194 (260)
T ss_pred EEcchHHHHHHHHHH
Confidence 987776655555544
No 447
>KOG4022|consensus
Probab=33.20 E-value=2.1e+02 Score=27.32 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=19.8
Q ss_pred HHHHHHHHhHhcCCCEEEEecCchhh
Q psy2427 95 SFLEATKFVRSVQCDAFIAVGGGSVI 120 (660)
Q Consensus 95 ~v~~~~~~~~~~~~D~IIavGGGsvi 120 (660)
.+++..+.+...+.|.|+.|-||=+.
T Consensus 60 v~~~vg~sL~gekvDav~CVAGGWAG 85 (236)
T KOG4022|consen 60 VLEQVGSSLQGEKVDAVFCVAGGWAG 85 (236)
T ss_pred HHHHHHHhhcccccceEEEeeccccC
Confidence 45666667778999999999887443
No 448
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=33.15 E-value=1.7e+02 Score=29.13 Aligned_cols=88 Identities=11% Similarity=0.023 Sum_probs=49.6
Q ss_pred HHHHHHHHhcCCCEEEEEECccccc--cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc--CCCEEEEe
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV--QCDAFIAV 114 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~D~IIav 114 (660)
..+.+++.+.|.+|++++++..... .....-+.+.+++.|+.+..........+.+...++...+... ++|+|++.
T Consensus 100 ~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 179 (261)
T cd06272 100 ELAVLYLAEKGHKKIAYIGDLSLDRRQRKRFKGFLETCDENGISISDSHIDVDGLSAEGGDNAAKKLLKESDLPTAIICG 179 (261)
T ss_pred HHHHHHHHHcCchhEEEeecccccccHHHHHHHHHHHHHHcCCCCCHHHeeeCCCCHHHHHHHHHHHHcCCCCCCEEEEC
Confidence 4466777778989999997653211 1123456677877775321100011223445555555544332 37999998
Q ss_pred cCchhhhHHHHH
Q psy2427 115 GGGSVIDTCKAA 126 (660)
Q Consensus 115 GGGsviD~AK~~ 126 (660)
....++-+.+++
T Consensus 180 ~d~~a~~~~~~l 191 (261)
T cd06272 180 SYDIALGVLSAL 191 (261)
T ss_pred CcHHHHHHHHHH
Confidence 776665555554
No 449
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=33.01 E-value=2.9e+02 Score=27.34 Aligned_cols=50 Identities=18% Similarity=0.135 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
..+.+.+.+++.|..+.++.. .-+.+...+..+.+.+.++|.||-.+...
T Consensus 17 ~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiii~~~~~ 66 (268)
T cd06298 17 LARGIDDIATMYKYNIILSNS---DNDKEKELKVLNNLLAKQVDGIIFMGGKI 66 (268)
T ss_pred HHHHHHHHHHHcCCeEEEEeC---CCCHHHHHHHHHHHHHhcCCEEEEeCCCC
Confidence 446677888888988876642 33455556677777788999999887543
No 450
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=32.96 E-value=1e+02 Score=35.63 Aligned_cols=45 Identities=7% Similarity=-0.006 Sum_probs=33.0
Q ss_pred hHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEE
Q psy2427 37 VTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFEL 83 (660)
Q Consensus 37 ~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~ 83 (660)
.++++.+.|.+ .+|++|++|......+..+.+.+..++.|+.+..
T Consensus 189 ~i~~a~~~L~~--A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~t 233 (588)
T PRK07525 189 SLAEAAELLSE--AKFPVILSGAGVVLSDAIEECKALAERLDAPVAC 233 (588)
T ss_pred HHHHHHHHHHh--CCCCEEEECCCccccChHHHHHHHHHHhCCCeEE
Confidence 45555555544 4899999999887666668888888888887663
No 451
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=32.93 E-value=2.9e+02 Score=27.85 Aligned_cols=48 Identities=8% Similarity=0.141 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
..+-+.+.+++.|+.+.++... + .+...+..+.+...++|.||..+..
T Consensus 20 ~~~gi~~~~~~~gy~~~i~~~~--~--~~~~~~~i~~l~~~~vdgiI~~~~~ 67 (265)
T cd06354 20 AWEGLERAAKELGIEYKYVESK--S--DADYEPNLEQLADAGYDLIVGVGFL 67 (265)
T ss_pred HHHHHHHHHHHcCCeEEEEecC--C--HHHHHHHHHHHHhCCCCEEEEcCcc
Confidence 4567778888899988876432 2 3445677888888999999998743
No 452
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=32.70 E-value=1.9e+02 Score=30.56 Aligned_cols=73 Identities=12% Similarity=0.159 Sum_probs=45.8
Q ss_pred HHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcc--cCC----------CHHHHHHHHHHhHhcC
Q psy2427 40 EVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR--VEP----------TGDSFLEATKFVRSVQ 107 (660)
Q Consensus 40 ~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~--~~p----------~~~~v~~~~~~~~~~~ 107 (660)
.+...+.+.| ..+.+++.+.... ...+++.|+++..++... ... ....+.++.+.+++.+
T Consensus 20 ~la~~L~~~g-~ev~vv~~~~~~~-------~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ik~~~ 91 (357)
T PRK00726 20 ALAEELKKRG-WEVLYLGTARGME-------ARLVPKAGIEFHFIPSGGLRRKGSLANLKAPFKLLKGVLQARKILKRFK 91 (357)
T ss_pred HHHHHHHhCC-CEEEEEECCCchh-------hhccccCCCcEEEEeccCcCCCChHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5777788777 5778888755211 122233577766554221 122 2556677777888999
Q ss_pred CCEEEEecCchhh
Q psy2427 108 CDAFIAVGGGSVI 120 (660)
Q Consensus 108 ~D~IIavGGGsvi 120 (660)
+|+|++.+....+
T Consensus 92 pDvv~~~~~~~~~ 104 (357)
T PRK00726 92 PDVVVGFGGYVSG 104 (357)
T ss_pred CCEEEECCCcchh
Confidence 9999999865543
No 453
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=32.68 E-value=79 Score=34.79 Aligned_cols=58 Identities=24% Similarity=0.164 Sum_probs=40.9
Q ss_pred HHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHh
Q psy2427 69 ATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYY 130 (660)
Q Consensus 69 ~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~ 130 (660)
-+...|++.|.++..+.-+. =+.+.+.++++.+.+. +|.||..||-|+.| .=++-..+
T Consensus 207 ~l~a~l~~~G~e~~~~giv~--Dd~~~l~~~i~~a~~~-~DviItsGG~SvG~-~D~v~~~l 264 (404)
T COG0303 207 MLAALLERAGGEVVDLGIVP--DDPEALREAIEKALSE-ADVIITSGGVSVGD-ADYVKAAL 264 (404)
T ss_pred HHHHHHHHcCCceeeccccC--CCHHHHHHHHHHhhhc-CCEEEEeCCccCcc-hHhHHHHH
Confidence 47778888998776554332 2367777777777765 99999999999987 44443333
No 454
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=32.67 E-value=99 Score=35.83 Aligned_cols=44 Identities=9% Similarity=-0.009 Sum_probs=32.1
Q ss_pred hHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEE
Q psy2427 37 VTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE 82 (660)
Q Consensus 37 ~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~ 82 (660)
.++++.+.|. +.+|++|+.|..+...+..+.+.+..+..|+.+.
T Consensus 191 ~i~~~~~~L~--~AkrPvIl~G~g~~~~~a~~~l~~lae~~g~PV~ 234 (588)
T TIGR01504 191 QIEKAVEMLN--AAERPLIVAGGGVINADAADLLQEFAELTGVPVI 234 (588)
T ss_pred HHHHHHHHHH--hCCCcEEEECCCcchhhhHHHHHHHHHHhCCCeE
Confidence 3455555554 3589999999998766666888888888888766
No 455
>PLN02564 6-phosphofructokinase
Probab=32.31 E-value=1.2e+02 Score=34.26 Aligned_cols=51 Identities=10% Similarity=0.045 Sum_probs=41.5
Q ss_pred HHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhc-CCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC
Q psy2427 95 SFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYC-DPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS 165 (660)
Q Consensus 95 ~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~-~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~ 165 (660)
..+++++.+++.++|.+|.|||-=.++.|..++.... ++ -++++|.||=|.
T Consensus 164 ~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g--------------------~~i~VIGIPKTI 215 (484)
T PLN02564 164 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRG--------------------LKVAVAGIPKTI 215 (484)
T ss_pred hHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcC--------------------CCceEEEecccc
Confidence 6789999999999999999999999998887765433 11 016799999997
No 456
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=32.30 E-value=1.3e+02 Score=34.24 Aligned_cols=76 Identities=12% Similarity=0.178 Sum_probs=46.2
Q ss_pred hHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEE--EeCc----ccCCCHHH-----HHHHHHHhHh
Q psy2427 37 VTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFEL--FDKV----RVEPTGDS-----FLEATKFVRS 105 (660)
Q Consensus 37 ~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~--~~~~----~~~p~~~~-----v~~~~~~~~~ 105 (660)
.++++.+.|.+ .+|++||.|......+..+.+.+..+..|+.+.. +.+- +.+|..-. -....+.++
T Consensus 195 ~~~~~~~~L~~--AkrPvIl~G~g~~~~~a~~~l~~lae~lg~pV~~t~~~~kg~~~~~hp~~~G~~g~~~~~~~~~l~- 271 (530)
T PRK07092 195 ALARLGDALDA--ARRPALVVGPAVDRAGAWDDAVRLAERHRAPVWVAPMSGRCSFPEDHPLFAGFLPASREKISALLD- 271 (530)
T ss_pred HHHHHHHHHHc--CCCcEEEECCCcchhhhHHHHHHHHHHHCCcEEEecCCCcCcCCCCCccccCcCCccHHHHHHHHh-
Confidence 45556555543 4899999999876555567777777778988763 2211 12332211 122223333
Q ss_pred cCCCEEEEecC
Q psy2427 106 VQCDAFIAVGG 116 (660)
Q Consensus 106 ~~~D~IIavGG 116 (660)
++|+||+||.
T Consensus 272 -~aDlvl~lG~ 281 (530)
T PRK07092 272 -GHDLVLVIGA 281 (530)
T ss_pred -hCCEEEEECC
Confidence 6899999994
No 457
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=32.25 E-value=3e+02 Score=27.68 Aligned_cols=86 Identities=14% Similarity=0.067 Sum_probs=46.5
Q ss_pred HHHHHHhc-CCCEEEEEECccccccc-hHHHHHHHHHhCC---CeEEEEeCcccC-CCHHHHHHHHHHhHhcCCCEEEEe
Q psy2427 41 VGMDMVNM-KAQRVCVMTDPHLSKLA-PVKATLDSLTRHG---VKFELFDKVRVE-PTGDSFLEATKFVRSVQCDAFIAV 114 (660)
Q Consensus 41 l~~~l~~~-g~~r~liVtd~~~~~~~-~~~~i~~~L~~~g---i~~~~~~~~~~~-p~~~~v~~~~~~~~~~~~D~IIav 114 (660)
+...+... |.+|+.++++....... ..+-+.+.+++.| +.+......... .+.+...++++.+.+.++|+|++.
T Consensus 111 a~~ll~~~~G~~~I~~i~~~~~~~~~~r~~gf~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~pdaI~~~ 190 (265)
T cd06354 111 AGYLAALMTKTGKVGFIGGMDIPLIRRFEAGFEAGVKYVNPGVPDIEVLVQYAGSFNDPAKGKEIAQAMYDQGADVIFAA 190 (265)
T ss_pred HHHHHHhhcCCCeEEEEecccChHHHHHHHHHHHHHHHHhccCCCceEEEEEcCcccCHHHHHHHHHHHHHCCCcEEEEC
Confidence 34444443 88999999764321111 1134566677767 543221111111 123444455555554568999999
Q ss_pred cCchhhhHHHHH
Q psy2427 115 GGGSVIDTCKAA 126 (660)
Q Consensus 115 GGGsviD~AK~~ 126 (660)
+....+-+.+++
T Consensus 191 nd~~A~gv~~al 202 (265)
T cd06354 191 AGGTGNGVFQAA 202 (265)
T ss_pred CCCCchHHHHHH
Confidence 887777666654
No 458
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=32.24 E-value=3.5e+02 Score=26.76 Aligned_cols=87 Identities=13% Similarity=0.113 Sum_probs=50.6
Q ss_pred HHHHHHHHhcCCCEEEEEECcccccc--chHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHH-HhHhcCCCEEEEec
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKL--APVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATK-FVRSVQCDAFIAVG 115 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~--~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~-~~~~~~~D~IIavG 115 (660)
..+.+++.+.|.+++++++++.-... ...+-+.+.+++.++.+... ...+.+.+...+..+ .++...+|+|++.+
T Consensus 105 ~~~~~~l~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~ai~~~~ 182 (264)
T cd01574 105 RLATEHLLELGHRTIAHVAGPEEWLSARARLAGWRAALEAAGIAPPPV--LEGDWSAESGYRAGRELLREGDPTAVFAAN 182 (264)
T ss_pred HHHHHHHHHCCCCEEEEEecCCccchHHHHHHHHHHHHHHCCCCccee--eecCCCHHHHHHHHHHHHhCCCCcEEEEcC
Confidence 45667777788899999987543211 12244667777777654321 112223333333333 33333489999988
Q ss_pred CchhhhHHHHHH
Q psy2427 116 GGSVIDTCKAAN 127 (660)
Q Consensus 116 GGsviD~AK~~a 127 (660)
.....-+.+++.
T Consensus 183 d~~a~g~~~~~~ 194 (264)
T cd01574 183 DQMALGVLRALH 194 (264)
T ss_pred cHHHHHHHHHHH
Confidence 777766666554
No 459
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=32.21 E-value=2.6e+02 Score=24.78 Aligned_cols=79 Identities=10% Similarity=0.019 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHh-CCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTR-HGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~-~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
..++..+.+.|.... ..+.. ..+...+.+.+ ...++..|+. ...+...+.++++.+|+..+|..|.+||.
T Consensus 6 ~~~aa~l~~~g~~v~--~~~~~-----~~~~~~~~~~~~~~pdiv~~S~--~~~~~~~~~~~~~~ik~~~p~~~iv~GG~ 76 (127)
T cd02068 6 AYLAAVLEDAGFIVA--EHDVL-----SADDIVEDIKELLKPDVVGISL--MTSAIYEALELAKIAKEVLPNVIVVVGGP 76 (127)
T ss_pred HHHHHHHHHCCCeee--ecCCC-----CHHHHHHHHHHhcCCCEEEEee--ccccHHHHHHHHHHHHHHCCCCEEEECCc
Confidence 456677777762111 12222 12444455544 4566666654 34556688999999999999999999998
Q ss_pred hhhhHHHHH
Q psy2427 118 SVIDTCKAA 126 (660)
Q Consensus 118 sviD~AK~~ 126 (660)
.+.....-+
T Consensus 77 ~~t~~p~~~ 85 (127)
T cd02068 77 HATFFPEEI 85 (127)
T ss_pred chhhCHHHH
Confidence 887665543
No 460
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.12 E-value=3.4e+02 Score=27.07 Aligned_cols=49 Identities=12% Similarity=0.011 Sum_probs=36.4
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
..+.+.+.+++.|..+.++.. +-+.+.-.+..+.+...++|.||-++..
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 65 (273)
T cd06292 17 FAEAIEAALAQYGYTVLLCNT---YRGGVSEADYVEDLLARGVRGVVFISSL 65 (273)
T ss_pred HHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 457788888889988776532 3344566677888888899999998753
No 461
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=31.97 E-value=1.1e+02 Score=28.14 Aligned_cols=61 Identities=20% Similarity=0.129 Sum_probs=41.6
Q ss_pred HHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch--hhhHHHHHHhHhc
Q psy2427 68 KATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS--VIDTCKAANLYYC 131 (660)
Q Consensus 68 ~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs--viD~AK~~a~~~~ 131 (660)
.-+.+.|++.|+++..+.-++ -+.+.+.+.++.+.+ +.|.||-.||-+ --|..+-+-..+.
T Consensus 20 ~~l~~~l~~~G~~v~~~~~v~--Dd~~~i~~~l~~~~~-~~D~VittGG~g~~~~D~t~~a~~~~~ 82 (144)
T PF00994_consen 20 PFLAALLEELGIEVIRYGIVP--DDPDAIKEALRRALD-RADLVITTGGTGPGPDDVTPEALAEAG 82 (144)
T ss_dssp HHHHHHHHHTTEEEEEEEEEE--SSHHHHHHHHHHHHH-TTSEEEEESSSSSSTTCHHHHHHHHHS
T ss_pred HHHHHHHHHcCCeeeEEEEEC--CCHHHHHHHHHhhhc-cCCEEEEcCCcCcccCCcccHHHHHhc
Confidence 567888889999877554333 257777777766655 349999999654 5677775544443
No 462
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=31.92 E-value=1.7e+02 Score=34.35 Aligned_cols=85 Identities=7% Similarity=-0.060 Sum_probs=52.7
Q ss_pred eEEECcChHHH-HHHHHHhcCCCEEEEEECccc-cccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 30 TIRIGPGVTRE-VGMDMVNMKAQRVCVMTDPHL-SKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 30 ~i~~G~g~~~~-l~~~l~~~g~~r~liVtd~~~-~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
-++||...+.. .-+.|.+.|..=+.|+|.+.- ........+.+...+.|+.+.....+. + .+.++.+++.+
T Consensus 3 ivf~g~~~~a~~~l~~L~~~~~~i~~V~t~pd~~~~~~~~~~v~~~a~~~~ip~~~~~~~~---~----~~~~~~l~~~~ 75 (660)
T PRK08125 3 AVVFAYHDIGCVGIEALLAAGYEIAAVFTHTDNPGENHFFGSVARLAAELGIPVYAPEDVN---H----PLWVERIRELA 75 (660)
T ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCcCCCCcCHHHHHHHHcCCcEEeeCCCC---c----HHHHHHHHhcC
Confidence 35678776644 334444456444557875421 111123567788888899987554332 1 23466788889
Q ss_pred CCEEEEecCchhhh
Q psy2427 108 CDAFIAVGGGSVID 121 (660)
Q Consensus 108 ~D~IIavGGGsviD 121 (660)
+|+||.+|-|..+.
T Consensus 76 ~D~iv~~~~~~ii~ 89 (660)
T PRK08125 76 PDVIFSFYYRNLLS 89 (660)
T ss_pred CCEEEEccccccCC
Confidence 99999999887663
No 463
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=31.83 E-value=3.2e+02 Score=27.13 Aligned_cols=49 Identities=16% Similarity=0.108 Sum_probs=36.2
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
+...+.+.+++.|..+.++.. +.+.+...++.+.+...++|.||.++.-
T Consensus 17 ~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiii~~~~ 65 (264)
T cd06274 17 IAKRLEALARERGYQLLIACS---DDDPETERETVETLIARQVDALIVAGSL 65 (264)
T ss_pred HHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 446677778888988776543 3345666788888889999999988753
No 464
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=31.81 E-value=1.1e+02 Score=33.23 Aligned_cols=46 Identities=15% Similarity=0.233 Sum_probs=27.9
Q ss_pred ChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeE
Q psy2427 36 GVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKF 81 (660)
Q Consensus 36 g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~ 81 (660)
....++.+.+.+.|.+||++.+|+.-...+...++.+.|+++|+++
T Consensus 53 ~p~~~cad~ii~~gi~rVVi~~D~d~~G~~~~~~~~~~L~~aGi~V 98 (360)
T PRK14719 53 TPVFQIADDLIAENISEVILLTDFDRAGRVYAKNIMEEFQSRGIKV 98 (360)
T ss_pred CchHHHHHHHHHcCCCEEEEEECCCCCCCccchHHHHHHHHCCCEE
Confidence 3334466666666777777777665433333456677777777766
No 465
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=31.72 E-value=1.7e+02 Score=29.96 Aligned_cols=99 Identities=10% Similarity=0.083 Sum_probs=67.5
Q ss_pred EEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCC------CHHHHH
Q psy2427 24 FEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEP------TGDSFL 97 (660)
Q Consensus 24 ~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p------~~~~v~ 97 (660)
..+.+ +++-|.+-.+.|.+++++.+.+-++=-|-|...+ .-+...+..++.|+.+..|...+-.+ ...+++
T Consensus 42 ~~~~~-~~~~G~l~~e~l~~~l~e~~i~llIDATHPyAa~--iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~ 118 (257)
T COG2099 42 EQIGP-VRVGGFLGAEGLAAFLREEGIDLLIDATHPYAAR--ISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIE 118 (257)
T ss_pred hccCC-eeecCcCCHHHHHHHHHHcCCCEEEECCChHHHH--HHHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHH
Confidence 33443 7788999999999999998743222122233332 33667778888999999987644333 267888
Q ss_pred HHHHHhHhcCCCEEEEecCchhhhHHHH
Q psy2427 98 EATKFVRSVQCDAFIAVGGGSVIDTCKA 125 (660)
Q Consensus 98 ~~~~~~~~~~~D~IIavGGGsviD~AK~ 125 (660)
++++.+...+--+.+++|.--+-...+.
T Consensus 119 ea~~~~~~~~~rVflt~G~~~l~~f~~~ 146 (257)
T COG2099 119 EAAEAAKQLGRRVFLTTGRQNLAHFVAA 146 (257)
T ss_pred HHHHHHhccCCcEEEecCccchHHHhcC
Confidence 8888888877778999987655444443
No 466
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=31.67 E-value=2e+02 Score=28.65 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=21.5
Q ss_pred CEEEEEEC-----ccccccchHHHHHHHHHhCCCeEEEEe
Q psy2427 51 QRVCVMTD-----PHLSKLAPVKATLDSLTRHGVKFELFD 85 (660)
Q Consensus 51 ~r~liVtd-----~~~~~~~~~~~i~~~L~~~gi~~~~~~ 85 (660)
+|++||.. .+.+...+ -.....|++.|+++.++.
T Consensus 2 kkVlills~~~~~dG~e~~E~-~~P~~~L~~aG~~V~~aS 40 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEA-VLTLLALDRAGAEAVCFA 40 (217)
T ss_pred CEEEEEEccCCCCCCEehhHH-HHHHHHHHHCCCEEEEEe
Confidence 56777664 34443322 345678888999988765
No 467
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=31.33 E-value=1.3e+02 Score=27.27 Aligned_cols=57 Identities=21% Similarity=0.109 Sum_probs=38.0
Q ss_pred HHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch--hhhHHHHHH
Q psy2427 68 KATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS--VIDTCKAAN 127 (660)
Q Consensus 68 ~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs--viD~AK~~a 127 (660)
..+.+.|++.|.++..+.-+ .-+.+.+.+.++.+.+. +|.||-.||=+ .-|..+-+-
T Consensus 22 ~~l~~~l~~~G~~v~~~~~v--~Dd~~~i~~~i~~~~~~-~DlvittGG~g~g~~D~t~~ai 80 (133)
T cd00758 22 PALEALLEDLGCEVIYAGVV--PDDADSIRAALIEASRE-ADLVLTTGGTGVGRRDVTPEAL 80 (133)
T ss_pred HHHHHHHHHCCCEEEEeeec--CCCHHHHHHHHHHHHhc-CCEEEECCCCCCCCCcchHHHH
Confidence 45777788889886543332 23466677777777654 89999998866 345555443
No 468
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=31.27 E-value=2.8e+02 Score=28.65 Aligned_cols=94 Identities=11% Similarity=0.059 Sum_probs=56.2
Q ss_pred eEEeccceEEEC-cChHHHHHHHHHhcCCCEEEEEECcccc--ccchHHHHHHHHH-hCCCeEEEEeCcccCCCHHHHHH
Q psy2427 23 AFEMASSTIRIG-PGVTREVGMDMVNMKAQRVCVMTDPHLS--KLAPVKATLDSLT-RHGVKFELFDKVRVEPTGDSFLE 98 (660)
Q Consensus 23 ~~~~~~~~i~~G-~g~~~~l~~~l~~~g~~r~liVtd~~~~--~~~~~~~i~~~L~-~~gi~~~~~~~~~~~p~~~~v~~ 98 (660)
.|++-|++=.-+ ...++. .+.|+.++ --++-||+.... .... -.+...|. +.|+++...--.. +.+...++.
T Consensus 2 s~E~~PP~~~~~~~~l~~~-~~~l~~~~-pd~isvT~~~~~~~~~~t-~~~a~~l~~~~g~~~i~Hlt~r-~~n~~~l~~ 77 (272)
T TIGR00676 2 SFEFFPPKTDEGEENLWET-VDRLSPLD-PDFVSVTYGAGGSTRDRT-VRIVRRIKKETGIPTVPHLTCI-GATREEIRE 77 (272)
T ss_pred EEEEECcCCchhHHHHHHH-HHHHhcCC-CCEEEeccCCCCCcHHHH-HHHHHHHHHhcCCCeeEEeeec-CCCHHHHHH
Confidence 355555553333 222222 34456555 356677775432 1112 23444555 5588866433222 467888999
Q ss_pred HHHHhHhcCCCEEEEecCchhh
Q psy2427 99 ATKFVRSVQCDAFIAVGGGSVI 120 (660)
Q Consensus 99 ~~~~~~~~~~D~IIavGGGsvi 120 (660)
.+..+.+.+++-|++++|...-
T Consensus 78 ~L~~~~~~Gi~nvL~l~GD~~~ 99 (272)
T TIGR00676 78 ILREYRELGIRHILALRGDPPK 99 (272)
T ss_pred HHHHHHHCCCCEEEEeCCCCCC
Confidence 9999999999999999997763
No 469
>TIGR00249 sixA phosphohistidine phosphatase SixA.
Probab=31.18 E-value=1.8e+02 Score=27.00 Aligned_cols=95 Identities=8% Similarity=-0.023 Sum_probs=55.6
Q ss_pred CcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE
Q psy2427 34 GPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA 113 (660)
Q Consensus 34 G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa 113 (660)
|......++..+.+.+.+.-.|++++..+.....+.+.+.+. ....+...++..+..+...+.+.++...+.+.+.|+-
T Consensus 27 G~~qa~~~~~~l~~~~~~~d~i~sSp~~Ra~qTa~~l~~~~~-~~~~~~~~~~l~p~~~~~~~~~~l~~~~~~~~~~vli 105 (152)
T TIGR00249 27 GCDESRLVAQWLKGQGVEIERILVSPFVRAEQTAEIVGDCLN-LPSSAEVLEGLTPCGDIGLVSDYLEALTNEGVASVLL 105 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHHHcC-CCcceEEccCcCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 333456678888876644457788887665433344444432 1234555666665666677777776665545667777
Q ss_pred ecCchhhhHHHHHHhHhc
Q psy2427 114 VGGGSVIDTCKAANLYYC 131 (660)
Q Consensus 114 vGGGsviD~AK~~a~~~~ 131 (660)
||=+-. +..++..+..
T Consensus 106 VgH~P~--i~~l~~~l~~ 121 (152)
T TIGR00249 106 VSHLPL--VGYLVAELCP 121 (152)
T ss_pred EeCCCC--HHHHHHHHhC
Confidence 765543 5555555554
No 470
>COG1731 Archaeal riboflavin synthase [Coenzyme metabolism]
Probab=30.94 E-value=1.2e+02 Score=27.69 Aligned_cols=65 Identities=22% Similarity=0.439 Sum_probs=34.7
Q ss_pred EECccccccchHHHHHHHHHh--CCCeEEEEeCcccCCCHHHHHHH-HHHhHhcCCCEEEEec--CchhhhHHH
Q psy2427 56 MTDPHLSKLAPVKATLDSLTR--HGVKFELFDKVRVEPTGDSFLEA-TKFVRSVQCDAFIAVG--GGSVIDTCK 124 (660)
Q Consensus 56 Vtd~~~~~~~~~~~i~~~L~~--~gi~~~~~~~~~~~p~~~~v~~~-~~~~~~~~~D~IIavG--GGsviD~AK 124 (660)
|+|..+.+........+.|++ .|+.+..+. .|...++--+ .+.+++.+||.||++| |..-.|---
T Consensus 6 iaDTTFaRvdMg~vai~~lk~~~~~~~i~R~T----VPGIKdlpvaakrLieeeGCd~Vi~lG~~G~t~~Dk~~ 75 (154)
T COG1731 6 IADTTFARVDMGSVAIDELKKLLPGIKIKRYT----VPGIKDLPVAAKRLIEEEGCDIVIALGWVGPTEKDKYS 75 (154)
T ss_pred eeccceeeecchHHHHHHHHhhCCCCceEEee----CCCcccChHHHHHHHHhcCCcEEEEccCcCcchhhHHH
Confidence 445555443322333333333 256665554 2333333333 4455669999999999 666666433
No 471
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli
Probab=30.94 E-value=2.6e+02 Score=30.22 Aligned_cols=84 Identities=8% Similarity=0.010 Sum_probs=50.4
Q ss_pred HHHHHHhcCCCEEEEEECcccc----ccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC
Q psy2427 41 VGMDMVNMKAQRVCVMTDPHLS----KLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG 116 (660)
Q Consensus 41 l~~~l~~~g~~r~liVtd~~~~----~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG 116 (660)
+.+.++.+|.+|+.||++..-. .....+.+.+.+++.|+.+... .........+....+..++... |.||..+-
T Consensus 133 ~~~~~~~~~w~~vaii~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~-~~~~~~~~~d~~~~l~~ik~~~-~vii~~~~ 210 (396)
T cd06373 133 VLALHEHFNWSRAALLYHDDKNDDRPCYFTLEGVYTVLKEENITVSDF-PFDEDKELDDYKELLRDISKKG-RVVIMCAS 210 (396)
T ss_pred HHHHHHHcCCeEEEEEEECCCCCcchHHHHHHHHHHHHhhcCceeeEE-eecCCccccCHHHHHHHHHhcC-cEEEEecC
Confidence 4456667788999999765422 1223467888888888876532 2322211245556666666655 88876653
Q ss_pred chhhhHHHHHHh
Q psy2427 117 GSVIDTCKAANL 128 (660)
Q Consensus 117 GsviD~AK~~a~ 128 (660)
.-|.+.++..
T Consensus 211 --~~~~~~~~~q 220 (396)
T cd06373 211 --PDTVREIMLA 220 (396)
T ss_pred --HHHHHHHHHH
Confidence 3456666543
No 472
>COG5441 Uncharacterized conserved protein [Function unknown]
Probab=30.83 E-value=2.6e+02 Score=29.31 Aligned_cols=40 Identities=15% Similarity=0.103 Sum_probs=27.0
Q ss_pred cCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCc
Q psy2427 106 VQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGT 167 (660)
Q Consensus 106 ~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gt 167 (660)
.++|.+|++||+-=.|+.--+...+--+ +|-+.|.|.++.
T Consensus 90 ~dV~gmig~GGsgGT~lit~~m~~LPlg----------------------vPK~mVST~Asg 129 (401)
T COG5441 90 GDVAGMIGMGGSGGTALITPAMRRLPLG----------------------VPKVMVSTLASG 129 (401)
T ss_pred cchhheeecCCCcchHhhhhHHHhcCcC----------------------Ccceeeeeeecc
Confidence 4567999999987666655443333211 788999999853
No 473
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=30.80 E-value=2.1e+02 Score=30.04 Aligned_cols=88 Identities=14% Similarity=0.064 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCCCEEEEEECcccccc--chHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHH-hHh-cCCCEEEEe
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKL--APVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKF-VRS-VQCDAFIAV 114 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~--~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~-~~~-~~~D~IIav 114 (660)
..+.++|.+.|.+++++|.+..-... ...+-+.+.|++.|+++........+.+.+...+.++. +.. .++|+|++.
T Consensus 167 ~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 246 (341)
T PRK10703 167 YLAGRYLIERGHRDIGVIPGPLERNTGAGRLAGFMKAMEEANIKVPEEWIVQGDFEPESGYEAMQQILSQKHRPTAVFCG 246 (341)
T ss_pred HHHHHHHHHCCCCcEEEEeCCccccchHHHHHHHHHHHHHcCCCCChHHeEeCCCCHHHHHHHHHHHHhCCCCCCEEEEC
Confidence 45677777788899999976432111 12344667888888764310011123334444444433 333 357999998
Q ss_pred cCchhhhHHHHH
Q psy2427 115 GGGSVIDTCKAA 126 (660)
Q Consensus 115 GGGsviD~AK~~ 126 (660)
+...++-+.+++
T Consensus 247 nd~~a~g~~~al 258 (341)
T PRK10703 247 GDIMAMGAICAA 258 (341)
T ss_pred CcHHHHHHHHHH
Confidence 877766555544
No 474
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=30.80 E-value=4.1e+02 Score=24.18 Aligned_cols=77 Identities=14% Similarity=0.131 Sum_probs=47.9
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh--cCCCEEEEecC
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS--VQCDAFIAVGG 116 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~IIavGG 116 (660)
..+...+.+.|.++ +++++++ ......+++.+.|+..+..+..+. . .-.+.+.++++++.+.+ ...|.+|..-|
T Consensus 14 ~~~a~~l~~~g~~~-v~~~~r~-~~~~~~~~l~~~l~~~~~~~~~~~-~-D~~~~~~~~~~~~~~~~~~~~ld~li~~ag 89 (167)
T PF00106_consen 14 RALARALARRGARV-VILTSRS-EDSEGAQELIQELKAPGAKITFIE-C-DLSDPESIRALIEEVIKRFGPLDILINNAG 89 (167)
T ss_dssp HHHHHHHHHTTTEE-EEEEESS-CHHHHHHHHHHHHHHTTSEEEEEE-S-ETTSHHHHHHHHHHHHHHHSSESEEEEECS
T ss_pred HHHHHHHHhcCceE-EEEeeec-cccccccccccccccccccccccc-c-cccccccccccccccccccccccccccccc
Confidence 33555566666444 4444544 112234677788887776666543 1 24568888988888873 46699997766
Q ss_pred chh
Q psy2427 117 GSV 119 (660)
Q Consensus 117 Gsv 119 (660)
...
T Consensus 90 ~~~ 92 (167)
T PF00106_consen 90 IFS 92 (167)
T ss_dssp CTT
T ss_pred ccc
Confidence 644
No 475
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=30.77 E-value=2.3e+02 Score=26.37 Aligned_cols=62 Identities=16% Similarity=0.000 Sum_probs=38.5
Q ss_pred EEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCC-C-HHHHHHHHHHhHhcCCCEEEEecC
Q psy2427 53 VCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEP-T-GDSFLEATKFVRSVQCDAFIAVGG 116 (660)
Q Consensus 53 ~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p-~-~~~v~~~~~~~~~~~~D~IIavGG 116 (660)
+.|=+|..-.+ +-+.+.+.|++.|.++.-+.....++ + .+...++.+.+.+..+|.-|.+-|
T Consensus 2 I~igsDhaG~~--lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~~~~~~GIliCG 65 (143)
T TIGR01120 2 IAIGSDHAGFI--LKEEIKAFLVERGVKVIDKGTWSSERTDYPHYAKQVALAVAGGEVDGGILICG 65 (143)
T ss_pred EEEEeCcchHH--HHHHHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHCCCCceEEEEcC
Confidence 45556665443 34789999999999887654322222 2 445566666777777885555443
No 476
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=30.75 E-value=3.9e+02 Score=26.59 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=34.4
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
....+.+.+++.|+.+.+++. ..+.+.-.+..+.+...++|.||...+-
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~l~~~~~~~vdgii~~~~~ 65 (273)
T cd06305 17 YLAGTKAEAEALGGDLRVYDA---GGDDAKQADQIDQAIAQKVDAIIIQHGR 65 (273)
T ss_pred HHHHHHHHHHHcCCEEEEECC---CCCHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 456778888899999887643 2344555566666667799999987653
No 477
>PRK09492 treR trehalose repressor; Provisional
Probab=30.68 E-value=3.2e+02 Score=28.11 Aligned_cols=84 Identities=10% Similarity=-0.057 Sum_probs=49.2
Q ss_pred HHHHHHHHhcCCCEEEEEECc-cccc--cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEec
Q psy2427 39 REVGMDMVNMKAQRVCVMTDP-HLSK--LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVG 115 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~-~~~~--~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavG 115 (660)
..+.++|.+.|.+|+.++++. .-.. ....+-..+.+++.|+...... .+-+.+...+.++.+.+.++|+|++..
T Consensus 164 ~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~---~~~~~~~~~~~~~~~l~~~~~ai~~~~ 240 (315)
T PRK09492 164 KLLMQRLYDQGHRHISYLGVDHSDVTTGKRRHQAYLAFCKQHKLTPVAAL---GGLSMQSGYELVAKVLTPETTALVCAT 240 (315)
T ss_pred HHHHHHHHHcCCCeEEEEcCCcccchhHHHHHHHHHHHHHHcCCCceeec---CCCCchHHHHHHHHHhhcCCCEEEEcC
Confidence 456788888899999999743 2111 1123456778888888754321 122333334444444445799999887
Q ss_pred CchhhhHHHH
Q psy2427 116 GGSVIDTCKA 125 (660)
Q Consensus 116 GGsviD~AK~ 125 (660)
--.++-+-++
T Consensus 241 D~~A~g~~~a 250 (315)
T PRK09492 241 DTLALGASKY 250 (315)
T ss_pred cHHHHHHHHH
Confidence 6554444443
No 478
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=30.54 E-value=5.7e+02 Score=26.40 Aligned_cols=48 Identities=19% Similarity=0.170 Sum_probs=33.8
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG 116 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG 116 (660)
..+.+.+.+++.|..+.++.. ..+.+.-.+..+.+...++|.||-+|.
T Consensus 77 l~~~i~~~~~~~g~~~~i~~~---~~~~~~~~~~~~~l~~~~vdGiIi~~~ 124 (329)
T TIGR01481 77 LARGIEDIATMYKYNIILSNS---DEDPEKEVQVLNTLLSKQVDGIIFMGG 124 (329)
T ss_pred HHHHHHHHHHHcCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 446677778888988876542 234455566677778889999998864
No 479
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=30.53 E-value=1.2e+02 Score=35.27 Aligned_cols=76 Identities=14% Similarity=0.155 Sum_probs=44.4
Q ss_pred hHHHHHHHHHhcCCCEEEEEECccccccc--hHHHHHHHHHhCCCeEEE-EeCc----ccCCCHH------HHHHHHHHh
Q psy2427 37 VTREVGMDMVNMKAQRVCVMTDPHLSKLA--PVKATLDSLTRHGVKFEL-FDKV----RVEPTGD------SFLEATKFV 103 (660)
Q Consensus 37 ~~~~l~~~l~~~g~~r~liVtd~~~~~~~--~~~~i~~~L~~~gi~~~~-~~~~----~~~p~~~------~v~~~~~~~ 103 (660)
.++++.+.|.+ .+|++||.|..+...+ ..+.+.+..+..|+.+.. +.+- +.+|..- .-....+.+
T Consensus 201 ~l~~a~~~L~~--A~rPvil~G~g~~~~~~~a~~~l~~lae~lg~pv~tt~~gkg~~p~~hpl~~G~~G~~~~~~~~~~l 278 (595)
T PRK09107 201 AITEAVELLAN--AKRPVIYSGGGVINSGPEASRLLRELVELTGFPITSTLMGLGAYPASGKNWLGMLGMHGTYEANMAM 278 (595)
T ss_pred HHHHHHHHHHh--CCCcEEEECCcccccchhHHHHHHHHHHHHCCCEEECccccccCCCCCCcccCCCCCCccHHHHHHH
Confidence 35555555554 4899999999876543 457777777778887663 2211 1122111 111222233
Q ss_pred HhcCCCEEEEecC
Q psy2427 104 RSVQCDAFIAVGG 116 (660)
Q Consensus 104 ~~~~~D~IIavGG 116 (660)
+ ++|+||+||.
T Consensus 279 ~--~aDlvL~lG~ 289 (595)
T PRK09107 279 H--DCDVMLCVGA 289 (595)
T ss_pred H--hCCEEEEECC
Confidence 3 6899999994
No 480
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=30.43 E-value=3.4e+02 Score=28.05 Aligned_cols=85 Identities=9% Similarity=-0.027 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCCCEEEEEECc-cccc--cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEec
Q psy2427 39 REVGMDMVNMKAQRVCVMTDP-HLSK--LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVG 115 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~-~~~~--~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavG 115 (660)
..+.++|.+.|.+|+.+++++ .-.. .....-..+.+++.|++...+ ..+.+.+...+.++.+.+.++|+||+..
T Consensus 161 ~~a~~~L~~~Ghr~I~~i~~~~~~~~~~~~R~~gf~~a~~~~gi~~~~~---~~~~~~~~~~~~~~~~l~~~~tAi~~~~ 237 (311)
T TIGR02405 161 ELLMANLYQQGHRHISFLGVDPSDKTTGLMRHNAYLAYCESANLEPIYQ---TGQLSHESGYVLTDKVLKPETTALVCAT 237 (311)
T ss_pred HHHHHHHHHcCCCcEEEEccCcccchhHHHHHHHHHHHHHHcCCCceee---eCCCCHHHHHHHHHHHHhcCCCEEEECC
Confidence 457788888899999999743 2111 112244677888888863221 1233444444444444345789999988
Q ss_pred CchhhhHHHHH
Q psy2427 116 GGSVIDTCKAA 126 (660)
Q Consensus 116 GGsviD~AK~~ 126 (660)
--.++-+-+++
T Consensus 238 D~~A~g~~~~l 248 (311)
T TIGR02405 238 DTLALGAAKYL 248 (311)
T ss_pred cHHHHHHHHHH
Confidence 77776555544
No 481
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=30.34 E-value=5.5e+02 Score=26.72 Aligned_cols=49 Identities=12% Similarity=0.190 Sum_probs=35.3
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
..+-+.+.+++.|..+.++.. +.+.+...+..+.+...++|.||-.+.-
T Consensus 82 i~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 130 (342)
T PRK10014 82 LTAGLTEALEAQGRMVFLLQG---GKDGEQLAQRFSTLLNQGVDGVVIAGAA 130 (342)
T ss_pred HHHHHHHHHHHcCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 345577788888887765432 3455666778888888899999988754
No 482
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=30.30 E-value=1.3e+02 Score=34.54 Aligned_cols=43 Identities=2% Similarity=-0.017 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEE
Q psy2427 38 TREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE 82 (660)
Q Consensus 38 ~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~ 82 (660)
++++.+.|.+ .+|++||.|......+..+.+.+..++.|+.+.
T Consensus 196 i~~~~~~l~~--A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~ 238 (574)
T PRK06882 196 IKKALKALLV--AKKPVLFVGGGVITAECSEQLTQFAQKLNLPVT 238 (574)
T ss_pred HHHHHHHHHh--CCCCEEEECCCccccchHHHHHHHHHHhCCCEE
Confidence 4555555554 489999999987665566778887788898766
No 483
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=30.27 E-value=85 Score=32.59 Aligned_cols=67 Identities=13% Similarity=0.177 Sum_probs=40.0
Q ss_pred EEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHH
Q psy2427 52 RVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCK 124 (660)
Q Consensus 52 r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK 124 (660)
|+||+...+. +...+.+.|++.|.++..... ...+..+.+.+.+.+++.++|+||=..|-+-.|.+.
T Consensus 2 riLI~GasG~----lG~~l~~~l~~~~~~v~~~~r--~~~dl~d~~~~~~~~~~~~pd~Vin~aa~~~~~~ce 68 (286)
T PF04321_consen 2 RILITGASGF----LGSALARALKERGYEVIATSR--SDLDLTDPEAVAKLLEAFKPDVVINCAAYTNVDACE 68 (286)
T ss_dssp EEEEETTTSH----HHHHHHHHHTTTSEEEEEEST--TCS-TTSHHHHHHHHHHH--SEEEE------HHHHH
T ss_pred EEEEECCCCH----HHHHHHHHHhhCCCEEEEeCc--hhcCCCCHHHHHHHHHHhCCCeEeccceeecHHhhh
Confidence 5566655554 336788899888877665532 255566677777888888899999999888777654
No 484
>PRK05569 flavodoxin; Provisional
Probab=30.26 E-value=3.4e+02 Score=24.42 Aligned_cols=56 Identities=11% Similarity=0.028 Sum_probs=36.8
Q ss_pred CCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh
Q psy2427 50 AQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS 105 (660)
Q Consensus 50 ~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~ 105 (660)
.|++.+++..+-......+.+.+.|+..|+.+.---.+...|+.++++++.+..++
T Consensus 83 ~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~~~~~~~~~g~~ 138 (141)
T PRK05569 83 NKKCILFGSYGWDNGEFMKLWKDRMKDYGFNVIGDLAVNESPNKEELNSAKELGKK 138 (141)
T ss_pred CCEEEEEeCCCCCCCcHHHHHHHHHHHCCCeEeeeEEEccCCCHHHHHHHHHHHHH
Confidence 36777766543222234577888888888876533344567888888888777654
No 485
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=30.20 E-value=2.2e+02 Score=31.00 Aligned_cols=26 Identities=8% Similarity=0.195 Sum_probs=20.4
Q ss_pred HHHHHHHHhHhcCCCEEEEecCchhhh
Q psy2427 95 SFLEATKFVRSVQCDAFIAVGGGSVID 121 (660)
Q Consensus 95 ~v~~~~~~~~~~~~D~IIavGGGsviD 121 (660)
.+.++.+.+++.++|+||++|| ....
T Consensus 77 ~~~~~~~~l~~~kPd~vi~~g~-~~~~ 102 (385)
T TIGR00215 77 IRKEVVQLAKQAKPDLLVGIDA-PDFN 102 (385)
T ss_pred HHHHHHHHHHhcCCCEEEEeCC-CCcc
Confidence 4566777888999999999996 4444
No 486
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=30.17 E-value=1.2e+02 Score=35.29 Aligned_cols=44 Identities=11% Similarity=0.080 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEE
Q psy2427 37 VTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE 82 (660)
Q Consensus 37 ~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~ 82 (660)
.++++.+.|.+ .+|++||.|..+...+..+.+.+..++.|+.+.
T Consensus 220 ~i~~~~~~L~~--AkrPlIl~G~g~~~~~a~~~l~~lae~l~~PV~ 263 (612)
T PRK07789 220 QIREAAKLIAA--ARRPVLYVGGGVIRAEASAELRELAELTGIPVV 263 (612)
T ss_pred HHHHHHHHHHh--CCCCEEEECCCccccCHHHHHHHHHHHHCCCEE
Confidence 35555565543 489999999988665666888888888898766
No 487
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=30.00 E-value=3.3e+02 Score=27.18 Aligned_cols=82 Identities=15% Similarity=0.129 Sum_probs=0.0
Q ss_pred EEEEEECc----cccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHH
Q psy2427 52 RVCVMTDP----HLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAAN 127 (660)
Q Consensus 52 r~liVtd~----~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a 127 (660)
|+.||... .-+-....+.+.+.+++.|+.+.++.. . +.+...+..+.+...++|.||-++....-...+.+.
T Consensus 1 ~Igvi~~~~~~~~~f~~~l~~gi~~~~~~~gy~~~~~~~---~-~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~ 76 (260)
T cd06304 1 KVALVYDGGGGDKSFNQSAYEGLEKAEKELGVEVKYVES---V-EDADYEPNLRQLAAQGYDLIFGVGFGFMDAVEKVAK 76 (260)
T ss_pred CEEEEecCCCCcchHHHHHHHHHHHHHHhcCceEEEEec---C-CHHHHHHHHHHHHHcCCCEEEECCcchhHHHHHHHH
Q ss_pred hHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEE
Q psy2427 128 LYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAI 161 (660)
Q Consensus 128 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~I 161 (660)
.... +|++.+
T Consensus 77 ~~~~------------------------ipvv~~ 86 (260)
T cd06304 77 EYPD------------------------VKFAII 86 (260)
T ss_pred HCCC------------------------CEEEEe
No 488
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.95 E-value=4.6e+02 Score=25.96 Aligned_cols=85 Identities=15% Similarity=0.221 Sum_probs=49.1
Q ss_pred HHHHHHHhc--CCCEEEEEECccccc-cchHHHHHHHHHhC-CCeEEEEeCcccCCCHHHHHHHH-HHhHh-cCCCEEEE
Q psy2427 40 EVGMDMVNM--KAQRVCVMTDPHLSK-LAPVKATLDSLTRH-GVKFELFDKVRVEPTGDSFLEAT-KFVRS-VQCDAFIA 113 (660)
Q Consensus 40 ~l~~~l~~~--g~~r~liVtd~~~~~-~~~~~~i~~~L~~~-gi~~~~~~~~~~~p~~~~v~~~~-~~~~~-~~~D~IIa 113 (660)
...+++.+. |.+++.+++++.... ....+-+++.+++. |+++.... ... +.+...+.+ +.++. .++++|++
T Consensus 109 ~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~l~~~~~~~ai~~ 185 (267)
T cd06322 109 LAGELAAKVLNGKGQVAIIDYPTVQSVVDRVRGFKEALADYPNIKIVAVQ--PGI-TRAEALTAAQNILQANPDLDGIFA 185 (267)
T ss_pred HHHHHHHHHhCCCceEEEEecCCCccHHHHHHHHHHHHHhCCCcEEEEec--CCC-ChHHHHHHHHHHHHhCCCCCEEEE
Confidence 355667665 778999998764221 11234566778877 77654221 112 223333333 33333 35799999
Q ss_pred ecCchhhhHHHHHH
Q psy2427 114 VGGGSVIDTCKAAN 127 (660)
Q Consensus 114 vGGGsviD~AK~~a 127 (660)
.+...++-+.+++.
T Consensus 186 ~~d~~a~~~~~al~ 199 (267)
T cd06322 186 FGDDAALGAVSAIK 199 (267)
T ss_pred cCCcHHHHHHHHHH
Confidence 98887766665553
No 489
>PRK10867 signal recognition particle protein; Provisional
Probab=29.94 E-value=2.3e+02 Score=31.47 Aligned_cols=86 Identities=17% Similarity=0.084 Sum_probs=50.1
Q ss_pred CcChHHH---HHHHHHhc-CCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCC
Q psy2427 34 GPGVTRE---VGMDMVNM-KAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCD 109 (660)
Q Consensus 34 G~g~~~~---l~~~l~~~-g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D 109 (660)
|.|-... |+..+.+. | +++++|+....+ .+..+++....+..|+.+.... ...+ ..+.+.++.+.++..+.|
T Consensus 110 GsGKTTtaakLA~~l~~~~G-~kV~lV~~D~~R-~aa~eQL~~~a~~~gv~v~~~~-~~~d-p~~i~~~a~~~a~~~~~D 185 (433)
T PRK10867 110 GAGKTTTAGKLAKYLKKKKK-KKVLLVAADVYR-PAAIEQLKTLGEQIGVPVFPSG-DGQD-PVDIAKAALEEAKENGYD 185 (433)
T ss_pred CCcHHHHHHHHHHHHHHhcC-CcEEEEEccccc-hHHHHHHHHHHhhcCCeEEecC-CCCC-HHHHHHHHHHHHHhcCCC
Confidence 6675543 55555555 5 788888754433 3345777777777787754321 1222 244455677888888899
Q ss_pred EEEEecCc-hhhhHH
Q psy2427 110 AFIAVGGG-SVIDTC 123 (660)
Q Consensus 110 ~IIavGGG-sviD~A 123 (660)
+||-=-.| ...|-.
T Consensus 186 vVIIDTaGrl~~d~~ 200 (433)
T PRK10867 186 VVIVDTAGRLHIDEE 200 (433)
T ss_pred EEEEeCCCCcccCHH
Confidence 66654444 444443
No 490
>PRK08322 acetolactate synthase; Reviewed
Probab=29.93 E-value=1.3e+02 Score=34.53 Aligned_cols=75 Identities=11% Similarity=0.065 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHH-----------HHHHHHHHhHh
Q psy2427 37 VTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGD-----------SFLEATKFVRS 105 (660)
Q Consensus 37 ~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~-----------~v~~~~~~~~~ 105 (660)
.++++.+.|.+- +|++||.|......+..+.+.+..+..|+.+..-......-+.+ .-..+.+.++
T Consensus 185 ~i~~~~~~l~~A--~rPviv~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hp~~~G~~G~~~~~~~~~~l~- 261 (547)
T PRK08322 185 AIERAAEAIQAA--KNPLILIGAGANRKTASKALTEFVDKTGIPFFTTQMGKGVIPETHPLSLGTAGLSQGDYVHCAIE- 261 (547)
T ss_pred HHHHHHHHHHhC--CCcEEEECCCcchhcHHHHHHHHHHHhCCCEEEccccCCcCCCCCchhccCCCCCCCHHHHHHHH-
Q ss_pred cCCCEEEEec
Q psy2427 106 VQCDAFIAVG 115 (660)
Q Consensus 106 ~~~D~IIavG 115 (660)
++|+||+||
T Consensus 262 -~aDlil~lG 270 (547)
T PRK08322 262 -HADLIINVG 270 (547)
T ss_pred -hCCEEEEEC
No 491
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=29.81 E-value=3.1e+02 Score=26.83 Aligned_cols=80 Identities=9% Similarity=0.089 Sum_probs=48.9
Q ss_pred CEEEEEECcccc-ccchHHHHHHHHHhC---CCeEEEEeCcccCCCHHHHHHHHHHhHhcCCC-EEEEecCch-hhhHHH
Q psy2427 51 QRVCVMTDPHLS-KLAPVKATLDSLTRH---GVKFELFDKVRVEPTGDSFLEATKFVRSVQCD-AFIAVGGGS-VIDTCK 124 (660)
Q Consensus 51 ~r~liVtd~~~~-~~~~~~~i~~~L~~~---gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D-~IIavGGGs-viD~AK 124 (660)
+++++|+...-. .....+.+.+.++.. ++++.+. .+......+.+.+..+..++..-+ .+|.+.||. .+-++-
T Consensus 27 ~~vilv~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~-~vd~~d~~~~~~~v~~~i~~~~~~~v~vnlsgG~R~l~~~~ 105 (203)
T TIGR01884 27 DLVILVKSPIEDGARRAVESLRAIISDLGGNLVEGTIK-EIELKDVPSILRQMSDIIKEEREPRVIINLSGGMRILILIL 105 (203)
T ss_pred cEEEEEcCCCchHHHHHHHHHHHHHHHhccCCCcceEE-EEecCCHHHHHHHHHHHHHhcccCcEEEEcCCCchHHHHHH
Confidence 356776644211 112346666666654 5565543 343444568888888888876544 888876665 477777
Q ss_pred HHHhHhc
Q psy2427 125 AANLYYC 131 (660)
Q Consensus 125 ~~a~~~~ 131 (660)
+.|+.+.
T Consensus 106 ~~a~~~~ 112 (203)
T TIGR01884 106 LLLAILV 112 (203)
T ss_pred HHHHHhc
Confidence 7777665
No 492
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=29.68 E-value=1.9e+02 Score=33.55 Aligned_cols=77 Identities=10% Similarity=0.130 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEE-EeCc----ccCCCHHHH-----HHHHHHhHhcC
Q psy2427 38 TREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFEL-FDKV----RVEPTGDSF-----LEATKFVRSVQ 107 (660)
Q Consensus 38 ~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~-~~~~----~~~p~~~~v-----~~~~~~~~~~~ 107 (660)
++++.+.|.+ .+|++||.|......+..+.+.+..+..|+.+.. +.+- +.+|..-.+ ......+.+ +
T Consensus 193 i~~~~~~L~~--AkrPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~~kg~~p~~hp~~~G~~G~~~~~~~~~~l~-~ 269 (586)
T PRK06276 193 IKKAAELIAE--AERPVILAGGGVIISGASEELIELSELVKIPVCTTLMGKGAFPEDHPLALGMVGMHGTKAANYSVT-E 269 (586)
T ss_pred HHHHHHHHHc--CCCeEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCCCCccCCCCCcccccCCCCCCCHHHHHHHH-c
Confidence 5555555544 4899999998876555567787777778887663 2111 112221100 112222222 6
Q ss_pred CCEEEEecCc
Q psy2427 108 CDAFIAVGGG 117 (660)
Q Consensus 108 ~D~IIavGGG 117 (660)
+|+||+||.-
T Consensus 270 aD~vl~lG~~ 279 (586)
T PRK06276 270 SDVLIAIGCR 279 (586)
T ss_pred CCEEEEECCC
Confidence 8999999953
No 493
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.66 E-value=4.8e+02 Score=26.22 Aligned_cols=87 Identities=6% Similarity=-0.019 Sum_probs=51.7
Q ss_pred HHHHHHHHhc--CCCEEEEEECccccc--cchHHHHHHHHHhCC-CeEEEEeCcccCCCHHHHHHHHHHhHh--cCCCEE
Q psy2427 39 REVGMDMVNM--KAQRVCVMTDPHLSK--LAPVKATLDSLTRHG-VKFELFDKVRVEPTGDSFLEATKFVRS--VQCDAF 111 (660)
Q Consensus 39 ~~l~~~l~~~--g~~r~liVtd~~~~~--~~~~~~i~~~L~~~g-i~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~I 111 (660)
..+.++|.+. |.+|++++++..-.. ....+-+.+.+++.+ +++.. ....+.+.+...+.++.+.. .++|+|
T Consensus 110 ~~~~~~l~~~~~g~~~i~~l~g~~~~~~~~~R~~gf~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai 187 (272)
T cd06313 110 ASVAQALCNAMGGKGKIAMLQGALGHTGAQGRAQGFNDVIKKYPDIEVVD--EQPANWDVSKAARIWETWLTKYPQLDGA 187 (272)
T ss_pred HHHHHHHHHHcCCCceEEEEECCCCCcchhHHHHHHHHHHHhCCCCEEEe--ccCCCCCHHHHHHHHHHHHHhCCCCCEE
Confidence 3456666666 778999998653211 112355667777665 54332 22234455555555554433 347999
Q ss_pred EEecCchhhhHHHHHH
Q psy2427 112 IAVGGGSVIDTCKAAN 127 (660)
Q Consensus 112 IavGGGsviD~AK~~a 127 (660)
++.....++-+.+++.
T Consensus 188 ~~~nd~~a~g~~~al~ 203 (272)
T cd06313 188 FCHNDSMALAAYQIMK 203 (272)
T ss_pred EECCCcHHHHHHHHHH
Confidence 9998887777766664
No 494
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=29.56 E-value=2.8e+02 Score=27.67 Aligned_cols=89 Identities=10% Similarity=-0.027 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCCCEEEEEECccccc-cchHHHHHHHHHhCCCeEEEEe--CcccCCCHHHHHHHHHHh-Hh-cCCCEEEE
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSK-LAPVKATLDSLTRHGVKFELFD--KVRVEPTGDSFLEATKFV-RS-VQCDAFIA 113 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~-~~~~~~i~~~L~~~gi~~~~~~--~~~~~p~~~~v~~~~~~~-~~-~~~D~IIa 113 (660)
..+.+++.+.|.+|+.++..+.... ....+-+.+.+++.|+.+.... ......+.+...+.++.+ +. .++|+|++
T Consensus 98 ~~~~~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~ 177 (265)
T cd01543 98 RMAAEHFLERGFRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEEEQEELAQWLQSLPKPVGIFA 177 (265)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCccccccccHHHHHHHHHHHHhcCCCCcEEEe
Confidence 3455677778989999987654311 1122446778888887652111 112233444444444433 33 35799999
Q ss_pred ecCchhhhHHHHHH
Q psy2427 114 VGGGSVIDTCKAAN 127 (660)
Q Consensus 114 vGGGsviD~AK~~a 127 (660)
.+.-..+-+.+++.
T Consensus 178 ~~d~~a~g~~~~l~ 191 (265)
T cd01543 178 CTDARARQLLEACR 191 (265)
T ss_pred cChHHHHHHHHHHH
Confidence 98777776666553
No 495
>COG2454 Uncharacterized conserved protein [Function unknown]
Probab=29.49 E-value=2.2e+02 Score=28.02 Aligned_cols=78 Identities=13% Similarity=0.056 Sum_probs=54.2
Q ss_pred HHHHHHHHHhcCCCEEEEEECccccccc-hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC
Q psy2427 38 TREVGMDMVNMKAQRVCVMTDPHLSKLA-PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG 116 (660)
Q Consensus 38 ~~~l~~~l~~~g~~r~liVtd~~~~~~~-~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG 116 (660)
++-+-+++++++.+++.++.|..+.+++ +...+.+.+++.+|+..++- ..+++.+-. +++ +|+-+-
T Consensus 116 l~lil~~lk~~~~k~vi~L~d~~vs~SGel~~~i~~~mK~~~I~g~~~l--vk~~D~eLk--------~~e---~VaTsD 182 (211)
T COG2454 116 LDLLLEFLKDVEPKSVIFLFDAPVSKSGELAGRIEEKMKSLGIPGEASL--VKNADFELK--------ELE---VVATSD 182 (211)
T ss_pred HHHHHHHHHHcCCceEEEEeCCCCCccHHHHHHHHHHHHhcCCCceeEe--ccCcCHHHH--------hcC---ceeecC
Confidence 3445577888898999999998876665 44678888988888866543 234444332 332 788888
Q ss_pred chhhhHHHHHHh
Q psy2427 117 GSVIDTCKAANL 128 (660)
Q Consensus 117 GsviD~AK~~a~ 128 (660)
+-++|-+|-+..
T Consensus 183 ~~IIdsv~~vVd 194 (211)
T COG2454 183 SGIIDSVKRVVD 194 (211)
T ss_pred eeeeeehhHHHh
Confidence 888888886543
No 496
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=29.41 E-value=4.1e+02 Score=26.34 Aligned_cols=49 Identities=12% Similarity=0.167 Sum_probs=35.6
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
...-+.+.+++.|+.+.++.. +-+.+...+..+.+...++|.||-.+..
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiii~~~~ 65 (269)
T cd06275 17 VVRGVEQYCYRQGYNLILCNT---EGDPERQRSYLRMLAQKRVDGLLVMCSE 65 (269)
T ss_pred HHHHHHHHHHHcCCEEEEEeC---CCChHHHHHHHHHHHHcCCCEEEEecCC
Confidence 446677778888988776532 3345666777888888899999988753
No 497
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=29.23 E-value=4.1e+02 Score=26.45 Aligned_cols=84 Identities=14% Similarity=0.076 Sum_probs=0.0
Q ss_pred EEEEEECc--cccccchHHHHHHHHHh-CCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHh
Q psy2427 52 RVCVMTDP--HLSKLAPVKATLDSLTR-HGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANL 128 (660)
Q Consensus 52 r~liVtd~--~~~~~~~~~~i~~~L~~-~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~ 128 (660)
|+.||... +-+-......+.+.+++ .|+.+.+++. .-+.+...+..+.+...++|.||-.+..+..+- +.+..
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~-~~~~~ 76 (272)
T cd06301 1 KIGVSMANFDDNFLTLLRNAMKEHAKVLGGVELQFEDA---KNDVATQLSQVENFIAQGVDAIIVVPVDTAATA-PIVKA 76 (272)
T ss_pred CeeEeecccCCHHHHHHHHHHHHHHHHcCCcEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEecCchhhhH-HHHHH
Q ss_pred HhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEE
Q psy2427 129 YYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAI 161 (660)
Q Consensus 129 ~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~I 161 (660)
+...+ +|+|.+
T Consensus 77 l~~~~----------------------iPvv~~ 87 (272)
T cd06301 77 ANAAG----------------------IPLVYV 87 (272)
T ss_pred HHHCC----------------------CeEEEe
No 498
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=29.23 E-value=4.3e+02 Score=26.95 Aligned_cols=55 Identities=25% Similarity=0.276 Sum_probs=38.5
Q ss_pred hCCCeEE-EEeCcccCCCHHHHHHHHHHhHhcCCCEE-EEecCchhhhHHHHHHhHh
Q psy2427 76 RHGVKFE-LFDKVRVEPTGDSFLEATKFVRSVQCDAF-IAVGGGSVIDTCKAANLYY 130 (660)
Q Consensus 76 ~~gi~~~-~~~~~~~~p~~~~v~~~~~~~~~~~~D~I-IavGGGsviD~AK~~a~~~ 130 (660)
+.+..+. -|..+...|+.+++.+..+.+++.++|.+ |++=--+.-|..++.....
T Consensus 133 ~~~~kvI~S~H~f~~tP~~~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~ 189 (253)
T PRK02412 133 EHGVKVVLSYHDFEKTPPKEEIVERLRKMESLGADIVKIAVMPQSEQDVLTLLNATR 189 (253)
T ss_pred HcCCEEEEeeCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHH
Confidence 3344433 35566777888888888888888888854 6776777788888765543
No 499
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=29.17 E-value=5.9e+02 Score=26.26 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=33.2
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG 116 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG 116 (660)
+.+-+.+.+++.|+.+.++.. +-+.+.-.+..+.+...++|.||-.+.
T Consensus 79 l~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~ 126 (328)
T PRK11303 79 IAKYLERQARQRGYQLLIACS---DDQPDNEMRCAEHLLQRQVDALIVSTS 126 (328)
T ss_pred HHHHHHHHHHHcCCEEEEEeC---CCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 345677778888998876542 223444556777787889999998764
No 500
>KOG4180|consensus
Probab=29.14 E-value=50 Score=34.69 Aligned_cols=69 Identities=16% Similarity=0.268 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 38 TREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 38 ~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
=++|..+|+..|-+--.++.-..+.. .+.+.+.+.|++.|++..+..... +.+-++ .+|+||.+||-
T Consensus 49 pdql~q~L~srgtdv~~ll~~hKvhk-n~~~~~~~~l~k~giesklv~R~~----------lsq~i~--waD~VisvGGD 115 (395)
T KOG4180|consen 49 PDQLLQYLESRGTDVGRLLSKHKVHK-NAIKFCQEELSKAGIESKLVSRND----------LSQPIR--WADMVISVGGD 115 (395)
T ss_pred HHHHHHHHHhcCchHHHHHHHhHHHH-HHHHHHHHHHhhCCcceeeeehhh----------ccCcCc--hhhEEEEecCc
Confidence 36788888888733223333333333 366889999999999865432211 111122 57999999994
Q ss_pred hh
Q psy2427 118 SV 119 (660)
Q Consensus 118 sv 119 (660)
-.
T Consensus 116 GT 117 (395)
T KOG4180|consen 116 GT 117 (395)
T ss_pred cc
Confidence 33
Done!