Query psy2427
Match_columns 660
No_of_seqs 298 out of 2613
Neff 7.9
Searched_HMMs 29240
Date Sat Aug 17 00:40:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2427.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2427hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ox4_A Alcohol dehydrogenase 2 100.0 1E-72 3.5E-77 610.0 38.0 383 19-657 1-383 (383)
2 3bfj_A 1,3-propanediol oxidore 100.0 2.6E-67 8.8E-72 570.1 41.5 381 21-657 5-387 (387)
3 3jzd_A Iron-containing alcohol 100.0 1.7E-66 5.9E-71 554.9 38.1 350 19-659 5-354 (358)
4 3hl0_A Maleylacetate reductase 100.0 1.5E-66 5.3E-71 554.7 34.8 348 18-659 2-349 (353)
5 1rrm_A Lactaldehyde reductase; 100.0 4.2E-66 1.4E-70 560.6 38.8 379 23-659 5-385 (386)
6 1vlj_A NADH-dependent butanol 100.0 1.2E-65 4.2E-70 559.7 39.4 383 18-658 12-407 (407)
7 3iv7_A Alcohol dehydrogenase I 100.0 8.4E-66 2.9E-70 550.3 34.6 346 20-659 6-352 (364)
8 1oj7_A Hypothetical oxidoreduc 100.0 6.5E-64 2.2E-68 546.6 38.2 381 19-657 22-408 (408)
9 1o2d_A Alcohol dehydrogenase, 100.0 3.1E-60 1.1E-64 511.0 34.1 356 22-658 14-370 (371)
10 3rf7_A Iron-containing alcohol 100.0 2.3E-59 7.7E-64 501.6 24.7 342 19-655 20-374 (375)
11 3uhj_A Probable glycerol dehyd 100.0 9E-59 3.1E-63 499.9 26.1 353 17-657 21-380 (387)
12 1kq3_A Glycerol dehydrogenase; 100.0 1.7E-53 5.8E-58 459.7 20.0 348 20-658 13-367 (376)
13 1jq5_A Glycerol dehydrogenase; 100.0 1.2E-51 4.1E-56 444.8 29.1 348 22-658 5-359 (370)
14 1ta9_A Glycerol dehydrogenase; 100.0 4.2E-52 1.4E-56 456.0 25.6 351 20-658 62-419 (450)
15 3ce9_A Glycerol dehydrogenase; 100.0 1.9E-51 6.6E-56 440.5 18.3 340 19-659 4-350 (354)
16 1xah_A Sadhqs, 3-dehydroquinat 100.0 3.3E-38 1.1E-42 337.5 12.0 268 28-367 11-294 (354)
17 2gru_A 2-deoxy-scyllo-inosose 100.0 7.8E-38 2.7E-42 335.8 7.8 275 28-367 12-301 (368)
18 1sg6_A Pentafunctional AROM po 100.0 6.5E-38 2.2E-42 339.3 6.8 288 19-367 4-326 (393)
19 3clh_A 3-dehydroquinate syntha 100.0 2.1E-35 7.3E-40 313.9 7.3 261 28-367 12-287 (343)
20 3okf_A 3-dehydroquinate syntha 100.0 3.8E-34 1.3E-38 306.0 13.1 171 28-225 41-218 (390)
21 1ujn_A Dehydroquinate synthase 100.0 9.3E-34 3.2E-38 301.7 15.7 258 28-367 11-283 (348)
22 3qbe_A 3-dehydroquinate syntha 100.0 1.7E-33 5.8E-38 299.4 16.4 169 28-225 23-198 (368)
23 2gru_A 2-deoxy-scyllo-inosose 99.8 5.4E-20 1.9E-24 197.1 0.1 198 370-629 119-319 (368)
24 1xah_A Sadhqs, 3-dehydroquinat 99.8 2.9E-19 9.9E-24 190.7 4.7 217 370-655 115-348 (354)
25 1sg6_A Pentafunctional AROM po 99.7 6.2E-20 2.1E-24 198.4 -3.5 192 370-619 130-335 (393)
26 3rf7_A Iron-containing alcohol 99.7 1.1E-17 3.8E-22 178.9 9.0 93 370-483 150-242 (375)
27 3clh_A 3-dehydroquinate syntha 99.7 3.6E-17 1.2E-21 173.5 5.8 190 370-630 110-305 (343)
28 3jzd_A Iron-containing alcohol 99.5 3.3E-15 1.1E-19 159.1 7.1 100 255-367 191-290 (358)
29 3iv7_A Alcohol dehydrogenase I 99.5 4.3E-15 1.5E-19 158.4 8.0 158 255-443 190-352 (364)
30 3hl0_A Maleylacetate reductase 99.5 7.3E-15 2.5E-19 156.2 7.4 99 256-367 190-288 (353)
31 1ujn_A Dehydroquinate synthase 99.5 2.7E-14 9.4E-19 151.6 7.5 172 370-616 109-289 (348)
32 3ox4_A Alcohol dehydrogenase 2 99.5 1.6E-14 5.5E-19 155.4 5.5 99 256-367 212-310 (383)
33 1oj7_A Hypothetical oxidoreduc 99.4 6.6E-14 2.3E-18 152.1 6.7 76 369-444 149-224 (408)
34 1vlj_A NADH-dependent butanol 99.4 7.1E-14 2.4E-18 151.7 6.3 78 369-446 141-218 (407)
35 1rrm_A Lactaldehyde reductase; 99.4 1.4E-13 5E-18 148.4 6.8 79 369-447 130-208 (386)
36 3bfj_A 1,3-propanediol oxidore 99.4 2E-13 7E-18 147.3 6.7 98 257-367 217-314 (387)
37 3uhj_A Probable glycerol dehyd 99.4 1.8E-13 6.1E-18 147.1 5.2 76 371-447 130-205 (387)
38 1o2d_A Alcohol dehydrogenase, 99.4 2.6E-13 8.9E-18 145.5 6.3 92 370-483 139-230 (371)
39 1kq3_A Glycerol dehydrogenase; 99.3 5E-13 1.7E-17 143.6 4.3 76 371-447 118-193 (376)
40 1jq5_A Glycerol dehydrogenase; 99.3 6.5E-13 2.2E-17 142.5 4.7 76 371-447 110-185 (370)
41 1ta9_A Glycerol dehydrogenase; 99.3 9.1E-13 3.1E-17 144.2 3.6 76 371-447 169-244 (450)
42 3okf_A 3-dehydroquinate syntha 99.2 2.2E-11 7.6E-16 130.1 7.8 69 370-441 148-218 (390)
43 3ce9_A Glycerol dehydrogenase; 99.1 5.1E-11 1.8E-15 126.9 3.9 71 371-445 112-182 (354)
44 3qbe_A 3-dehydroquinate syntha 99.0 2.6E-09 8.9E-14 113.4 14.8 69 370-441 128-198 (368)
45 1u11_A PURE (N5-carboxyaminoim 96.7 0.0066 2.2E-07 56.6 9.6 98 40-166 13-110 (182)
46 3oow_A Phosphoribosylaminoimid 96.7 0.011 3.8E-07 54.4 10.8 88 52-166 7-94 (166)
47 3ors_A N5-carboxyaminoimidazol 96.6 0.0085 2.9E-07 55.0 9.5 89 51-166 4-92 (163)
48 3lp6_A Phosphoribosylaminoimid 96.6 0.0095 3.3E-07 55.2 9.8 89 51-166 8-96 (174)
49 3trh_A Phosphoribosylaminoimid 96.5 0.012 4.2E-07 54.2 10.1 88 51-165 7-94 (169)
50 3kuu_A Phosphoribosylaminoimid 96.4 0.012 4.1E-07 54.5 9.3 88 51-165 13-100 (174)
51 4grd_A N5-CAIR mutase, phospho 96.4 0.014 4.8E-07 53.9 9.7 91 51-168 13-103 (173)
52 1o4v_A Phosphoribosylaminoimid 96.4 0.017 5.6E-07 54.0 10.1 89 51-166 14-102 (183)
53 3rg8_A Phosphoribosylaminoimid 96.4 0.023 7.7E-07 52.1 10.7 88 51-165 3-91 (159)
54 1xmp_A PURE, phosphoribosylami 96.4 0.012 4.2E-07 54.2 9.0 89 51-166 12-100 (170)
55 4b4k_A N5-carboxyaminoimidazol 95.5 0.081 2.8E-06 49.1 10.1 88 52-166 24-111 (181)
56 2h31_A Multifunctional protein 95.0 0.064 2.2E-06 57.1 9.0 88 51-165 266-354 (425)
57 2bon_A Lipid kinase; DAG kinas 94.3 0.15 5E-06 53.1 9.8 75 50-128 29-104 (332)
58 2ywx_A Phosphoribosylaminoimid 93.8 0.17 5.8E-06 46.1 7.8 81 53-163 2-82 (157)
59 2qv7_A Diacylglycerol kinase D 92.7 0.29 1E-05 50.8 8.9 73 50-126 24-100 (337)
60 1u0t_A Inorganic polyphosphate 92.2 0.52 1.8E-05 48.3 9.9 78 51-128 5-97 (307)
61 2i2c_A Probable inorganic poly 92.0 0.19 6.4E-06 50.7 6.1 54 52-127 2-56 (272)
62 2an1_A Putative kinase; struct 91.8 0.054 1.8E-06 55.3 1.7 78 50-127 5-84 (292)
63 3s40_A Diacylglycerol kinase; 91.5 0.5 1.7E-05 48.3 8.8 74 48-126 6-83 (304)
64 1pea_A Amidase operon; gene re 87.8 2.9 9.8E-05 43.5 11.4 88 39-126 129-217 (385)
65 1z0s_A Probable inorganic poly 84.9 1 3.5E-05 45.4 5.6 57 52-126 31-88 (278)
66 3hsy_A Glutamate receptor 2; l 84.4 2.7 9.1E-05 43.8 8.9 99 20-128 98-198 (376)
67 4eyg_A Twin-arginine transloca 83.4 3.6 0.00012 42.2 9.4 89 39-131 128-216 (368)
68 3ks9_A Mglur1, metabotropic gl 82.9 5.8 0.0002 43.2 11.2 78 40-117 187-266 (496)
69 3o21_A Glutamate receptor 3; p 82.7 6.2 0.00021 41.2 11.0 96 21-127 108-203 (389)
70 3sm9_A Mglur3, metabotropic gl 82.7 3.2 0.00011 45.0 9.0 102 21-128 160-262 (479)
71 2q5c_A NTRC family transcripti 82.1 4.4 0.00015 38.4 8.6 80 35-127 81-160 (196)
72 3snr_A Extracellular ligand-bi 82.0 4.4 0.00015 41.2 9.3 88 39-131 124-212 (362)
73 2pju_A Propionate catabolism o 81.1 5 0.00017 38.9 8.7 69 46-126 103-171 (225)
74 4evq_A Putative ABC transporte 81.0 5.6 0.00019 40.8 9.8 88 39-131 140-228 (375)
75 2pln_A HP1043, response regula 80.3 13 0.00044 31.7 10.5 66 50-129 18-83 (137)
76 2e4u_A Metabotropic glutamate 79.8 8.6 0.00029 42.3 11.3 86 40-127 176-262 (555)
77 3saj_A Glutamate receptor 1; r 78.4 5 0.00017 41.7 8.4 98 21-130 106-203 (384)
78 3hut_A Putative branched-chain 78.3 6.2 0.00021 40.2 9.0 88 39-130 128-215 (358)
79 3i45_A Twin-arginine transloca 78.1 7.6 0.00026 40.1 9.8 88 39-130 131-220 (387)
80 3lop_A Substrate binding perip 77.7 4.3 0.00015 41.7 7.6 89 39-131 130-218 (364)
81 3ixl_A Amdase, arylmalonate de 76.2 10 0.00035 37.1 9.3 74 38-114 105-187 (240)
82 3i09_A Periplasmic branched-ch 75.9 8.3 0.00028 39.6 9.2 88 39-130 129-216 (375)
83 3pfn_A NAD kinase; structural 75.2 3.2 0.00011 43.4 5.6 77 50-126 38-128 (365)
84 4f06_A Extracellular ligand-bi 75.1 5.9 0.0002 40.9 7.8 73 41-115 130-202 (371)
85 3n0w_A ABC branched chain amin 75.0 7.6 0.00026 40.0 8.7 87 39-130 131-218 (379)
86 3sg0_A Extracellular ligand-bi 74.8 5.9 0.0002 40.7 7.7 89 39-131 148-236 (386)
87 3l4e_A Uncharacterized peptida 74.5 13 0.00044 35.4 9.3 84 36-127 13-98 (206)
88 3lkb_A Probable branched-chain 74.5 10 0.00036 39.1 9.6 88 40-131 132-220 (392)
89 4f11_A Gamma-aminobutyric acid 74.4 6.1 0.00021 41.7 7.8 86 39-131 143-228 (433)
90 3eaf_A ABC transporter, substr 72.8 7.2 0.00025 40.4 7.8 87 40-130 130-220 (391)
91 1usg_A Leucine-specific bindin 72.6 9.2 0.00032 38.5 8.4 87 39-130 126-214 (346)
92 3kg2_A Glutamate receptor 2; I 72.5 8.5 0.00029 44.4 9.1 98 20-127 98-197 (823)
93 4gpa_A Glutamate receptor 4; P 71.4 26 0.0009 35.7 11.8 85 39-128 119-203 (389)
94 3gyb_A Transcriptional regulat 69.9 13 0.00044 36.3 8.5 88 39-127 107-196 (280)
95 3h5l_A Putative branched-chain 68.8 4.1 0.00014 42.9 4.8 79 49-130 163-241 (419)
96 2q5c_A NTRC family transcripti 68.4 18 0.00062 34.1 8.8 75 51-165 5-80 (196)
97 3h6g_A Glutamate receptor, ion 68.4 11 0.00036 39.2 7.9 87 39-131 127-213 (395)
98 1pfk_A Phosphofructokinase; tr 68.3 10 0.00034 38.9 7.4 49 92-165 79-127 (320)
99 2xed_A Putative maleate isomer 68.1 16 0.00054 36.4 8.7 88 38-128 134-230 (273)
100 2h4a_A YRAM (HI1655); perplasm 67.8 9.7 0.00033 39.0 7.3 77 38-118 110-186 (325)
101 1zxx_A 6-phosphofructokinase; 67.5 9.6 0.00033 39.0 7.0 50 92-166 78-127 (319)
102 3td9_A Branched chain amino ac 67.5 13 0.00043 38.0 8.2 88 39-131 137-226 (366)
103 2dgd_A 223AA long hypothetical 65.3 23 0.00077 33.8 9.0 87 38-127 96-192 (223)
104 1jdp_A NPR-C, atrial natriuret 64.6 18 0.00061 38.1 8.9 83 41-128 145-230 (441)
105 3afo_A NADH kinase POS5; alpha 64.5 10 0.00035 40.0 6.7 72 50-126 41-134 (388)
106 4a3s_A 6-phosphofructokinase; 64.2 12 0.00041 38.3 7.0 49 93-166 79-127 (319)
107 3cs3_A Sugar-binding transcrip 62.6 22 0.00074 34.6 8.5 84 39-125 107-195 (277)
108 3cf4_G Acetyl-COA decarboxylas 62.4 11 0.00039 34.5 6.0 44 38-83 24-67 (170)
109 1ytl_A Acetyl-COA decarboxylas 62.3 11 0.00038 34.9 5.8 42 38-83 24-66 (174)
110 3g1w_A Sugar ABC transporter; 62.3 16 0.00056 36.0 7.7 88 39-126 114-206 (305)
111 3gv0_A Transcriptional regulat 61.9 22 0.00076 34.8 8.5 88 39-126 116-207 (288)
112 2qh8_A Uncharacterized protein 61.7 38 0.0013 33.5 10.3 83 39-126 127-212 (302)
113 3d8u_A PURR transcriptional re 61.6 22 0.00076 34.3 8.4 88 39-126 109-200 (275)
114 3f6p_A Transcriptional regulat 61.4 51 0.0018 27.1 9.7 63 51-126 3-68 (120)
115 1dbq_A Purine repressor; trans 61.0 16 0.00054 35.8 7.2 88 39-126 115-206 (289)
116 3lft_A Uncharacterized protein 61.0 41 0.0014 33.1 10.4 84 38-126 119-205 (295)
117 3ipc_A ABC transporter, substr 61.0 18 0.00061 36.6 7.8 88 40-131 127-215 (356)
118 3hno_A Pyrophosphate-dependent 60.1 14 0.00048 39.3 6.8 54 92-165 89-143 (419)
119 2fvy_A D-galactose-binding per 60.1 33 0.0011 33.7 9.5 79 48-126 138-222 (309)
120 3grc_A Sensor protein, kinase; 59.7 61 0.0021 27.2 10.1 65 51-128 7-74 (140)
121 1t6c_A Exopolyphosphatase; alp 59.7 9.7 0.00033 38.9 5.4 77 38-119 70-150 (315)
122 3mdq_A Exopolyphosphatase; str 59.4 21 0.00073 36.2 8.0 77 38-119 62-143 (315)
123 3hcw_A Maltose operon transcri 59.3 33 0.0011 33.7 9.3 86 38-126 119-211 (295)
124 3k4h_A Putative transcriptiona 58.7 18 0.00062 35.3 7.2 88 39-126 120-211 (292)
125 2qu7_A Putative transcriptiona 58.6 15 0.00051 36.0 6.5 87 39-126 111-206 (288)
126 3czc_A RMPB; alpha/beta sandwi 58.0 15 0.00051 31.1 5.4 59 46-114 14-74 (110)
127 2ywr_A Phosphoribosylglycinami 57.7 45 0.0015 31.8 9.5 84 31-121 5-94 (216)
128 3auf_A Glycinamide ribonucleot 57.7 47 0.0016 32.1 9.7 81 34-121 31-115 (229)
129 2f48_A Diphosphate--fructose-6 57.3 14 0.00048 40.8 6.4 56 92-166 151-206 (555)
130 3av3_A Phosphoribosylglycinami 56.9 36 0.0012 32.4 8.6 82 33-121 11-96 (212)
131 2pjk_A 178AA long hypothetical 56.7 35 0.0012 31.6 8.2 58 68-127 43-103 (178)
132 3i42_A Response regulator rece 56.4 57 0.002 26.9 9.2 65 51-128 4-71 (127)
133 2hqr_A Putative transcriptiona 56.3 40 0.0014 31.4 9.0 64 52-129 2-65 (223)
134 3pzy_A MOG; ssgcid, seattle st 56.3 12 0.0004 34.3 4.8 51 68-121 30-80 (164)
135 2h3h_A Sugar ABC transporter, 56.1 52 0.0018 32.5 10.2 86 39-126 110-201 (313)
136 2o20_A Catabolite control prot 55.3 18 0.00062 36.4 6.7 88 39-126 169-258 (332)
137 1dp4_A Atrial natriuretic pept 55.0 25 0.00087 36.7 8.0 84 40-129 136-226 (435)
138 3c3k_A Alanine racemase; struc 54.9 79 0.0027 30.6 11.2 65 51-118 9-75 (285)
139 3bbl_A Regulatory protein of L 54.8 20 0.00067 35.2 6.6 88 39-126 114-207 (287)
140 2fep_A Catabolite control prot 54.7 22 0.00074 35.0 6.9 88 39-126 122-214 (289)
141 3brq_A HTH-type transcriptiona 54.6 18 0.00061 35.4 6.3 88 39-126 128-219 (296)
142 3hv2_A Response regulator/HD d 54.1 68 0.0023 27.6 9.6 65 51-128 15-82 (153)
143 2h0a_A TTHA0807, transcription 54.1 17 0.00058 35.2 6.0 88 39-126 103-199 (276)
144 3qek_A NMDA glutamate receptor 54.1 11 0.00039 38.9 4.9 89 39-129 128-235 (384)
145 3k9c_A Transcriptional regulat 53.7 26 0.00089 34.4 7.4 87 39-126 115-204 (289)
146 3s2u_A UDP-N-acetylglucosamine 53.4 91 0.0031 31.9 11.8 73 40-120 21-105 (365)
147 3cer_A Possible exopolyphospha 53.4 23 0.00079 36.5 7.0 77 38-119 75-158 (343)
148 3gl9_A Response regulator; bet 53.4 84 0.0029 25.8 9.7 63 51-126 3-68 (122)
149 3otg_A CALG1; calicheamicin, T 53.1 87 0.003 32.0 11.7 78 40-130 39-150 (412)
150 3hi0_A Putative exopolyphospha 53.0 30 0.001 37.8 8.2 78 37-119 72-152 (508)
151 3o74_A Fructose transport syst 52.5 46 0.0016 31.8 8.9 86 39-126 109-199 (272)
152 3k4h_A Putative transcriptiona 52.3 62 0.0021 31.3 9.9 50 66-118 31-80 (292)
153 3g85_A Transcriptional regulat 51.9 22 0.00074 34.8 6.4 89 39-127 116-208 (289)
154 2hsg_A Glucose-resistance amyl 51.4 29 0.00098 34.9 7.4 88 39-126 166-258 (332)
155 3om0_A Glutamate receptor, ion 51.0 29 0.001 35.7 7.5 84 40-130 129-212 (393)
156 3l6u_A ABC-type sugar transpor 50.9 1.3E+02 0.0044 29.0 12.1 64 51-117 9-74 (293)
157 3p9x_A Phosphoribosylglycinami 50.9 62 0.0021 30.8 9.1 83 32-121 7-95 (211)
158 3gbv_A Putative LACI-family tr 50.7 25 0.00084 34.5 6.6 87 39-126 122-218 (304)
159 2rgy_A Transcriptional regulat 50.6 21 0.00072 35.0 6.1 85 39-126 117-208 (290)
160 3egc_A Putative ribose operon 50.1 74 0.0025 30.8 10.1 65 51-118 9-75 (291)
161 2rjn_A Response regulator rece 50.0 91 0.0031 26.7 9.8 65 51-128 8-75 (154)
162 1byk_A Protein (trehalose oper 49.9 34 0.0012 32.6 7.4 85 39-126 104-191 (255)
163 3eod_A Protein HNR; response r 49.7 99 0.0034 25.4 9.6 65 50-127 7-74 (130)
164 3kke_A LACI family transcripti 49.0 74 0.0025 31.2 10.0 66 51-119 16-83 (303)
165 1wcw_A Uroporphyrinogen III sy 49.0 25 0.00086 34.2 6.3 73 35-114 117-190 (261)
166 2zsk_A PH1733, 226AA long hypo 49.0 74 0.0025 30.2 9.6 41 39-82 104-144 (226)
167 3jy6_A Transcriptional regulat 49.0 80 0.0027 30.3 10.1 65 51-118 8-74 (276)
168 2qxy_A Response regulator; reg 48.8 79 0.0027 26.6 9.0 63 51-126 5-69 (142)
169 4e5s_A MCCFLIKE protein (BA_56 48.7 28 0.00097 35.6 6.8 68 51-118 13-89 (331)
170 3qk7_A Transcriptional regulat 48.5 28 0.00095 34.2 6.6 88 39-126 115-206 (294)
171 3l49_A ABC sugar (ribose) tran 48.5 1.4E+02 0.0049 28.6 11.9 64 51-117 6-71 (291)
172 3clk_A Transcription regulator 48.4 24 0.00082 34.5 6.1 85 39-126 114-204 (290)
173 3hzh_A Chemotaxis response reg 48.3 97 0.0033 26.8 9.7 65 51-128 37-107 (157)
174 3lmz_A Putative sugar isomeras 48.3 48 0.0016 31.9 8.2 83 33-116 27-111 (257)
175 3kjx_A Transcriptional regulat 48.2 26 0.00088 35.5 6.4 88 39-126 174-266 (344)
176 3gt7_A Sensor protein; structu 48.0 1E+02 0.0034 26.6 9.7 64 51-127 8-74 (154)
177 3brq_A HTH-type transcriptiona 47.6 1.2E+02 0.004 29.2 11.1 64 51-117 20-87 (296)
178 3kke_A LACI family transcripti 47.6 28 0.00097 34.4 6.5 88 39-126 120-216 (303)
179 3dbi_A Sugar-binding transcrip 47.4 1.2E+02 0.0043 30.0 11.6 49 66-117 81-129 (338)
180 3rot_A ABC sugar transporter, 47.3 89 0.0031 30.4 10.2 86 39-127 117-208 (297)
181 3o1n_A 3-dehydroquinate dehydr 47.3 98 0.0034 30.7 10.3 59 72-130 153-213 (276)
182 3cg0_A Response regulator rece 46.8 1.2E+02 0.0039 25.3 9.7 66 51-129 10-80 (140)
183 2zay_A Response regulator rece 46.7 89 0.0031 26.4 9.0 64 51-127 9-75 (147)
184 3g1w_A Sugar ABC transporter; 46.3 1.1E+02 0.0037 29.8 10.7 66 51-118 5-72 (305)
185 3lte_A Response regulator; str 46.3 1.2E+02 0.0042 24.8 10.4 64 51-127 7-73 (132)
186 3rqi_A Response regulator prot 46.2 91 0.0031 27.9 9.4 65 51-128 8-75 (184)
187 3e61_A Putative transcriptiona 45.9 36 0.0012 32.8 6.9 85 39-127 111-197 (277)
188 3d8t_A Uroporphyrinogen-III sy 45.9 25 0.00086 34.9 5.8 63 51-119 156-219 (286)
189 3rfq_A Pterin-4-alpha-carbinol 45.8 32 0.0011 32.1 6.0 52 68-121 52-103 (185)
190 2wte_A CSA3; antiviral protein 45.7 55 0.0019 31.9 8.1 100 30-130 10-117 (244)
191 2es9_A Putative cytoplasmic pr 45.3 47 0.0016 27.0 5.9 59 595-653 36-107 (115)
192 1dbq_A Purine repressor; trans 45.2 1.2E+02 0.004 29.2 10.6 65 51-118 8-74 (289)
193 3c3k_A Alanine racemase; struc 45.1 26 0.00091 34.2 5.8 85 39-126 113-203 (285)
194 3e61_A Putative transcriptiona 45.0 1E+02 0.0034 29.5 10.1 62 51-115 9-72 (277)
195 1xmx_A Hypothetical protein VC 44.9 1.9E+02 0.0065 30.0 12.6 89 32-123 9-102 (385)
196 3hbm_A UDP-sugar hydrolase; PS 44.7 36 0.0012 33.9 6.7 15 107-121 225-239 (282)
197 1qpz_A PURA, protein (purine n 44.6 1.7E+02 0.0058 29.1 12.1 64 51-117 59-124 (340)
198 2b99_A Riboflavin synthase; lu 44.5 32 0.0011 31.2 5.5 61 52-116 4-66 (156)
199 1mkz_A Molybdenum cofactor bio 44.3 41 0.0014 30.8 6.5 61 68-130 31-94 (172)
200 3jvd_A Transcriptional regulat 44.3 89 0.003 31.3 9.8 85 39-126 163-250 (333)
201 3ckm_A YRAM (HI1655), LPOA; pe 44.0 16 0.00053 37.0 3.9 84 38-127 112-195 (327)
202 3rsc_A CALG2; TDP, enediyne, s 43.4 1.4E+02 0.0048 30.5 11.5 78 41-130 40-139 (415)
203 3cg4_A Response regulator rece 43.2 95 0.0033 25.9 8.6 65 51-128 8-75 (142)
204 1fuk_A Eukaryotic initiation f 43.2 1.3E+02 0.0044 26.6 9.8 71 37-114 17-87 (165)
205 3hp4_A GDSL-esterase; psychrot 43.1 81 0.0028 28.1 8.5 66 51-116 3-75 (185)
206 3hs3_A Ribose operon repressor 43.1 63 0.0022 31.2 8.2 62 51-115 11-75 (277)
207 1zl0_A Hypothetical protein PA 43.0 38 0.0013 34.4 6.6 68 51-118 18-91 (311)
208 3dbi_A Sugar-binding transcrip 43.0 35 0.0012 34.2 6.5 88 39-126 170-261 (338)
209 3lkv_A Uncharacterized conserv 42.8 79 0.0027 31.4 9.0 49 68-117 27-79 (302)
210 2j48_A Two-component sensor ki 42.7 1.2E+02 0.0041 23.9 8.8 64 51-127 2-68 (119)
211 1qpz_A PURA, protein (purine n 42.7 37 0.0013 34.1 6.6 88 39-126 166-257 (340)
212 2gkg_A Response regulator homo 42.6 1.2E+02 0.0041 24.5 8.9 64 51-127 6-73 (127)
213 1u6z_A Exopolyphosphatase; alp 42.6 29 0.00098 37.9 6.0 78 37-119 68-149 (513)
214 3opy_A 6-phosphofructo-1-kinas 42.3 31 0.0011 40.4 6.3 56 93-166 674-729 (989)
215 2rb4_A ATP-dependent RNA helic 42.2 1.2E+02 0.004 27.2 9.4 72 37-115 21-92 (175)
216 3m9w_A D-xylose-binding peripl 42.0 1.6E+02 0.0056 28.7 11.3 50 66-118 20-69 (313)
217 1qkk_A DCTD, C4-dicarboxylate 42.0 1E+02 0.0035 26.4 8.7 65 51-128 4-71 (155)
218 1jkx_A GART;, phosphoribosylgl 41.5 82 0.0028 29.9 8.4 66 49-121 27-93 (212)
219 3huu_A Transcription regulator 41.3 86 0.003 30.7 9.0 50 66-118 45-94 (305)
220 3tb6_A Arabinose metabolism tr 41.2 2E+02 0.0068 27.5 11.7 65 51-118 16-82 (298)
221 1srr_A SPO0F, sporulation resp 41.2 1.4E+02 0.0048 24.1 9.8 65 51-128 4-71 (124)
222 3e3m_A Transcriptional regulat 41.2 77 0.0027 32.0 8.8 88 39-126 176-269 (355)
223 3egc_A Putative ribose operon 41.1 53 0.0018 31.9 7.3 87 39-127 114-206 (291)
224 1meo_A Phosophoribosylglycinam 40.8 78 0.0027 30.0 8.1 83 32-121 7-93 (209)
225 2hjv_A ATP-dependent RNA helic 40.8 1.1E+02 0.0039 26.9 9.0 73 35-114 20-92 (163)
226 2fqx_A Membrane lipoprotein TM 40.8 1.2E+02 0.0041 30.2 10.1 85 43-127 121-208 (318)
227 3o8o_A 6-phosphofructokinase s 40.3 41 0.0014 38.6 6.9 56 94-167 470-525 (787)
228 3ia7_A CALG4; glycosysltransfe 40.2 1.9E+02 0.0066 29.1 11.9 79 41-131 24-124 (402)
229 1jr2_A Uroporphyrinogen-III sy 40.1 69 0.0024 31.6 8.0 85 35-124 140-227 (286)
230 3gbv_A Putative LACI-family tr 40.0 1.1E+02 0.0036 29.7 9.4 53 66-118 27-80 (304)
231 3lkv_A Uncharacterized conserv 39.9 1.8E+02 0.006 28.7 11.1 86 39-129 127-215 (302)
232 1t5i_A C_terminal domain of A 39.7 1.3E+02 0.0044 26.9 9.3 74 35-115 16-89 (172)
233 2rjo_A Twin-arginine transloca 39.7 67 0.0023 32.0 8.0 86 39-126 123-216 (332)
234 3da8_A Probable 5'-phosphoribo 39.6 78 0.0027 30.2 7.8 80 32-121 17-103 (215)
235 3cfy_A Putative LUXO repressor 39.5 1.3E+02 0.0044 25.2 8.9 63 52-127 6-71 (137)
236 2iks_A DNA-binding transcripti 39.4 86 0.0029 30.4 8.6 87 39-127 127-217 (293)
237 3jte_A Response regulator rece 39.4 1.7E+02 0.0057 24.4 9.9 65 51-128 4-73 (143)
238 2qr3_A Two-component system re 39.4 1.2E+02 0.004 25.2 8.5 65 51-128 4-76 (140)
239 4es6_A Uroporphyrinogen-III sy 38.8 30 0.001 33.6 4.9 79 37-121 115-198 (254)
240 1mb3_A Cell division response 38.6 1.5E+02 0.0052 23.8 9.6 64 51-127 2-68 (124)
241 2vvr_A Ribose-5-phosphate isom 38.5 1.4E+02 0.0048 26.7 8.8 63 52-116 3-67 (149)
242 2qh8_A Uncharacterized protein 38.4 1.1E+02 0.0038 30.0 9.3 48 66-116 25-78 (302)
243 1yt5_A Inorganic polyphosphate 38.4 14 0.00048 36.4 2.4 23 104-126 38-61 (258)
244 2fn9_A Ribose ABC transporter, 38.3 2E+02 0.0068 27.5 11.1 49 66-117 20-68 (290)
245 3ksm_A ABC-type sugar transpor 38.3 62 0.0021 30.9 7.2 86 39-126 112-206 (276)
246 3gxh_A Putative phosphatase (D 38.3 1.7E+02 0.0059 25.8 9.7 88 29-118 20-108 (157)
247 3t6k_A Response regulator rece 38.2 1.7E+02 0.0059 24.3 10.1 64 51-127 5-71 (136)
248 2is8_A Molybdopterin biosynthe 38.2 43 0.0015 30.3 5.6 61 68-130 24-87 (164)
249 3tqr_A Phosphoribosylglycinami 38.0 1.3E+02 0.0043 28.7 9.1 81 34-121 14-97 (215)
250 3o8l_A 6-phosphofructokinase, 38.0 34 0.0012 39.1 5.8 57 93-167 475-531 (762)
251 2a9o_A Response regulator; ess 37.6 1.5E+02 0.0053 23.5 9.2 64 51-127 2-68 (120)
252 3pdi_B Nitrogenase MOFE cofact 37.6 1.1E+02 0.0038 32.6 9.6 73 47-131 310-393 (458)
253 3h5i_A Response regulator/sens 37.4 1.8E+02 0.0061 24.2 10.3 65 51-128 6-75 (140)
254 3kht_A Response regulator; PSI 37.4 1.4E+02 0.0049 24.9 8.8 65 51-126 6-73 (144)
255 2hig_A 6-phospho-1-fructokinas 37.4 48 0.0016 35.8 6.5 52 96-166 178-229 (487)
256 4e7p_A Response regulator; DNA 37.4 1.4E+02 0.0047 25.4 8.8 65 51-128 21-90 (150)
257 3iwt_A 178AA long hypothetical 37.2 59 0.002 29.7 6.5 57 68-126 43-102 (178)
258 1y5e_A Molybdenum cofactor bio 37.0 49 0.0017 30.1 5.8 60 68-129 34-96 (169)
259 3d02_A Putative LACI-type tran 36.9 1E+02 0.0034 30.0 8.6 88 39-126 114-208 (303)
260 2fqx_A Membrane lipoprotein TM 36.9 1.6E+02 0.0055 29.2 10.3 64 51-118 5-73 (318)
261 3lua_A Response regulator rece 36.8 1.1E+02 0.0038 25.5 8.0 65 51-128 5-75 (140)
262 3h75_A Periplasmic sugar-bindi 36.6 1.8E+02 0.0061 29.0 10.8 62 51-115 4-70 (350)
263 3mm4_A Histidine kinase homolo 36.6 2.2E+02 0.0076 25.9 10.7 67 50-129 61-144 (206)
264 3ctp_A Periplasmic binding pro 36.1 19 0.00067 36.1 3.2 87 39-126 161-250 (330)
265 3sr3_A Microcin immunity prote 36.1 55 0.0019 33.6 6.6 68 51-118 14-90 (336)
266 3e3m_A Transcriptional regulat 36.0 2.3E+02 0.0079 28.3 11.5 50 66-118 88-137 (355)
267 2iks_A DNA-binding transcripti 35.7 2.2E+02 0.0074 27.4 10.9 64 51-117 21-86 (293)
268 2pju_A Propionate catabolism o 35.4 1.1E+02 0.0037 29.4 8.1 78 51-165 14-92 (225)
269 3ph3_A Ribose-5-phosphate isom 35.3 1.3E+02 0.0043 27.6 8.0 63 52-116 22-86 (169)
270 3l49_A ABC sugar (ribose) tran 35.1 48 0.0016 32.1 5.9 88 39-126 112-210 (291)
271 2rdm_A Response regulator rece 35.0 1.8E+02 0.0063 23.6 10.1 65 51-128 6-75 (132)
272 3eul_A Possible nitrate/nitrit 34.9 95 0.0032 26.5 7.3 67 50-127 15-84 (152)
273 4fe7_A Xylose operon regulator 34.9 1E+02 0.0036 31.9 8.8 89 39-127 128-223 (412)
274 2bw0_A 10-FTHFDH, 10-formyltet 34.8 55 0.0019 33.4 6.3 86 30-120 25-112 (329)
275 2p6n_A ATP-dependent RNA helic 34.6 1.3E+02 0.0044 27.6 8.5 72 35-114 40-111 (191)
276 3cnb_A DNA-binding response re 34.6 1.9E+02 0.0067 23.8 9.5 64 51-127 9-77 (143)
277 3oti_A CALG3; calicheamicin, T 34.4 81 0.0028 32.3 7.8 64 39-113 38-136 (398)
278 3h5o_A Transcriptional regulat 34.4 2.7E+02 0.0091 27.5 11.6 50 66-118 80-129 (339)
279 2hqb_A Transcriptional activat 34.4 1.1E+02 0.0038 30.1 8.5 49 66-117 25-73 (296)
280 4ds3_A Phosphoribosylglycinami 34.3 1.1E+02 0.0039 28.9 8.0 83 32-121 14-100 (209)
281 2vk2_A YTFQ, ABC transporter p 34.3 95 0.0033 30.4 8.0 87 39-126 114-210 (306)
282 3opy_B 6-phosphofructo-1-kinas 34.2 56 0.0019 38.2 6.7 54 95-166 650-703 (941)
283 1e2b_A Enzyme IIB-cellobiose; 33.9 36 0.0012 28.5 4.0 34 51-84 4-37 (106)
284 3zy2_A Putative GDP-fucose pro 33.8 58 0.002 33.5 6.1 74 36-122 266-339 (362)
285 2o20_A Catabolite control prot 33.8 2.7E+02 0.0091 27.4 11.5 49 66-117 81-129 (332)
286 1uuy_A CNX1, molybdopterin bio 33.8 64 0.0022 29.2 6.0 58 69-128 29-94 (167)
287 2g2c_A Putative molybdenum cof 33.7 46 0.0016 30.2 5.0 59 68-128 28-92 (167)
288 2qzj_A Two-component response 33.7 2.1E+02 0.007 23.8 9.6 64 51-127 5-71 (136)
289 2fn9_A Ribose ABC transporter, 33.6 1.3E+02 0.0044 29.0 8.8 86 39-126 112-210 (290)
290 3he8_A Ribose-5-phosphate isom 33.1 1.5E+02 0.0051 26.5 8.0 63 52-116 2-66 (149)
291 2x7x_A Sensor protein; transfe 33.0 2E+02 0.0069 28.2 10.3 64 51-117 7-72 (325)
292 3o74_A Fructose transport syst 33.0 2.2E+02 0.0077 26.7 10.4 49 66-117 20-68 (272)
293 3hs3_A Ribose operon repressor 33.0 71 0.0024 30.8 6.7 83 39-126 112-197 (277)
294 3dnf_A ISPH, LYTB, 4-hydroxy-3 33.0 1.3E+02 0.0045 30.1 8.4 77 51-131 157-233 (297)
295 3cz5_A Two-component response 32.9 2E+02 0.0068 24.3 9.1 65 51-128 6-75 (153)
296 3brs_A Periplasmic binding pro 32.9 84 0.0029 30.3 7.2 86 39-126 118-209 (289)
297 3tla_A MCCF; serine protease, 32.6 60 0.0021 33.8 6.2 68 51-118 44-120 (371)
298 3hcw_A Maltose operon transcri 32.6 1.5E+02 0.005 28.8 9.0 49 66-117 30-78 (295)
299 3fst_A 5,10-methylenetetrahydr 32.5 88 0.003 31.5 7.3 99 21-121 24-124 (304)
300 3hdv_A Response regulator; PSI 32.5 1.8E+02 0.0063 23.9 8.6 64 51-127 8-75 (136)
301 3nhm_A Response regulator; pro 32.5 2E+02 0.007 23.4 9.8 63 51-127 5-70 (133)
302 1mvo_A PHOP response regulator 32.5 2.1E+02 0.0071 23.5 10.0 64 51-127 4-70 (136)
303 1sfl_A 3-dehydroquinate dehydr 32.4 2.5E+02 0.0085 26.9 10.4 60 71-130 118-179 (238)
304 2x7x_A Sensor protein; transfe 32.3 1.3E+02 0.0043 29.8 8.6 86 39-126 115-207 (325)
305 3kbq_A Protein TA0487; structu 32.2 76 0.0026 29.1 6.2 61 68-131 26-89 (172)
306 2bln_A Protein YFBG; transfera 32.1 49 0.0017 33.4 5.3 83 30-120 3-88 (305)
307 4fzr_A SSFS6; structural genom 31.9 2.4E+02 0.0081 28.6 10.9 66 39-114 33-130 (398)
308 3crn_A Response regulator rece 31.6 2.1E+02 0.0073 23.4 10.1 64 51-127 4-70 (132)
309 3m6m_D Sensory/regulatory prot 31.5 2.3E+02 0.0079 23.7 10.1 65 51-128 15-82 (143)
310 3kcn_A Adenylate cyclase homol 31.5 2.4E+02 0.008 23.8 9.4 63 51-127 5-71 (151)
311 3f6c_A Positive transcription 31.4 1.3E+02 0.0044 24.8 7.4 63 52-127 3-69 (134)
312 3kto_A Response regulator rece 31.4 68 0.0023 26.9 5.6 64 51-127 7-75 (136)
313 3h5o_A Transcriptional regulat 31.4 1.3E+02 0.0044 30.0 8.5 86 39-126 167-258 (339)
314 3o8o_B 6-phosphofructokinase s 31.4 31 0.0011 39.5 4.0 56 94-167 471-526 (766)
315 3tb6_A Arabinose metabolism tr 31.3 84 0.0029 30.3 6.9 87 39-126 126-220 (298)
316 1jx6_A LUXP protein; protein-l 31.1 96 0.0033 30.9 7.5 86 39-126 162-253 (342)
317 3m9w_A D-xylose-binding peripl 31.0 1.2E+02 0.0041 29.7 8.1 87 39-126 111-207 (313)
318 4eys_A MCCC family protein; MC 30.9 84 0.0029 32.3 7.0 68 51-118 6-84 (346)
319 2fvy_A D-galactose-binding per 30.8 3.4E+02 0.011 26.0 11.5 50 66-118 20-70 (309)
320 3nkl_A UDP-D-quinovosamine 4-d 30.8 1E+02 0.0034 26.4 6.6 87 49-163 3-100 (141)
321 3k7p_A Ribose 5-phosphate isom 30.8 1.7E+02 0.0059 26.9 8.2 63 52-116 24-90 (179)
322 2obx_A DMRL synthase 1, 6,7-di 30.6 47 0.0016 30.1 4.3 61 51-115 12-78 (157)
323 2vvp_A Ribose-5-phosphate isom 30.3 1.4E+02 0.0047 27.2 7.4 63 52-116 5-70 (162)
324 1c2y_A Protein (lumazine synth 30.2 54 0.0019 29.7 4.6 61 51-115 14-79 (156)
325 3tqq_A Methionyl-tRNA formyltr 30.2 89 0.003 31.6 6.9 84 30-120 5-93 (314)
326 2fep_A Catabolite control prot 30.1 2.1E+02 0.0073 27.4 9.8 49 66-117 34-82 (289)
327 1di0_A Lumazine synthase; tran 30.1 46 0.0016 30.2 4.2 61 51-115 11-77 (158)
328 3r0j_A Possible two component 30.1 2.4E+02 0.0081 26.5 9.9 64 51-127 24-90 (250)
329 2i0f_A 6,7-dimethyl-8-ribityll 30.1 1.2E+02 0.004 27.5 6.9 61 51-115 13-81 (157)
330 1tjy_A Sugar transport protein 30.1 2.2E+02 0.0075 27.9 10.0 88 40-127 115-209 (316)
331 3rot_A ABC sugar transporter, 29.8 3E+02 0.01 26.4 10.9 51 66-117 21-71 (297)
332 3tsa_A SPNG, NDP-rhamnosyltran 29.7 1.1E+02 0.0038 31.0 7.9 20 96-115 103-122 (391)
333 1ejb_A Lumazine synthase; anal 29.6 1.2E+02 0.004 27.8 6.9 61 51-115 17-88 (168)
334 3s99_A Basic membrane lipoprot 29.4 2.1E+02 0.0072 29.2 9.8 73 51-127 27-105 (356)
335 3h4t_A Glycosyltransferase GTF 29.3 2.2E+02 0.0076 29.2 10.2 92 40-165 19-126 (404)
336 2pl1_A Transcriptional regulat 29.3 2.2E+02 0.0074 22.7 10.1 63 52-127 2-67 (121)
337 2jba_A Phosphate regulon trans 29.2 1.9E+02 0.0066 23.2 8.1 64 51-127 3-69 (127)
338 3uug_A Multiple sugar-binding 29.2 4E+02 0.014 25.8 12.8 49 66-117 21-69 (330)
339 2l2q_A PTS system, cellobiose- 29.2 46 0.0016 27.9 3.9 33 51-83 5-37 (109)
340 8abp_A L-arabinose-binding pro 29.1 2E+02 0.0067 27.8 9.3 49 66-118 20-68 (306)
341 3gv0_A Transcriptional regulat 29.0 1.4E+02 0.0047 28.8 8.1 49 66-117 28-76 (288)
342 3heb_A Response regulator rece 28.8 2.5E+02 0.0086 23.6 9.1 65 51-128 5-83 (152)
343 1kgs_A DRRD, DNA binding respo 28.7 3E+02 0.01 25.0 10.1 64 51-127 3-69 (225)
344 1k68_A Phytochrome response re 28.6 2.1E+02 0.0072 23.3 8.3 65 51-128 3-79 (140)
345 3o1i_D Periplasmic protein TOR 28.6 1.9E+02 0.0064 27.8 9.1 67 51-118 6-74 (304)
346 3mq4_A Mglur7, metabotropic gl 28.6 12 0.00042 40.2 0.1 85 40-126 176-264 (481)
347 3a10_A Response regulator; pho 28.6 2.2E+02 0.0074 22.5 10.3 64 51-127 2-68 (116)
348 4h1h_A LMO1638 protein; MCCF-l 28.5 1.1E+02 0.0039 30.9 7.5 68 51-118 13-89 (327)
349 3s5p_A Ribose 5-phosphate isom 28.3 1.8E+02 0.006 26.5 7.7 67 48-116 19-87 (166)
350 1ccw_A Protein (glutamate muta 28.1 78 0.0027 27.6 5.4 51 68-119 44-95 (137)
351 3kjx_A Transcriptional regulat 28.1 3.3E+02 0.011 26.9 11.0 49 66-117 86-134 (344)
352 2ek0_A Stage V sporulation pro 28.1 40 0.0014 27.4 3.0 41 90-130 9-50 (90)
353 3hdg_A Uncharacterized protein 28.1 2.5E+02 0.0085 23.0 8.7 64 51-127 8-74 (137)
354 1mio_B Nitrogenase molybdenum 27.9 1.6E+02 0.0054 31.3 8.8 76 41-131 327-403 (458)
355 3dm5_A SRP54, signal recogniti 27.8 1.7E+02 0.0059 31.0 8.9 77 34-114 110-189 (443)
356 1o1x_A Ribose-5-phosphate isom 27.8 2.2E+02 0.0074 25.6 8.2 64 51-116 13-78 (155)
357 3bil_A Probable LACI-family tr 27.8 2.7E+02 0.0091 27.8 10.3 50 66-118 84-133 (348)
358 3eaq_A Heat resistant RNA depe 27.7 2.1E+02 0.0071 26.6 8.8 73 35-114 16-88 (212)
359 1dbw_A Transcriptional regulat 27.6 2.4E+02 0.0083 22.7 9.9 64 51-127 4-70 (126)
360 1jye_A Lactose operon represso 27.6 1.4E+02 0.0049 29.9 8.1 86 39-126 168-257 (349)
361 3ilh_A Two component response 27.5 2.6E+02 0.0089 23.0 9.9 65 51-128 10-84 (146)
362 2b4a_A BH3024; flavodoxin-like 27.2 2.3E+02 0.008 23.3 8.4 63 51-126 16-82 (138)
363 3q0i_A Methionyl-tRNA formyltr 27.2 1.8E+02 0.006 29.4 8.5 85 30-121 10-99 (318)
364 3mw8_A Uroporphyrinogen-III sy 27.0 61 0.0021 31.0 4.9 62 50-120 120-184 (240)
365 2o6l_A UDP-glucuronosyltransfe 26.8 99 0.0034 27.3 6.0 12 106-117 85-96 (170)
366 2rjo_A Twin-arginine transloca 26.8 2.2E+02 0.0076 28.0 9.4 65 51-118 6-74 (332)
367 2pbq_A Molybdenum cofactor bio 26.7 1E+02 0.0034 28.3 6.1 60 68-130 28-93 (178)
368 3lm8_A Thiamine pyrophosphokin 26.6 76 0.0026 30.4 5.4 83 30-122 26-109 (222)
369 2dri_A D-ribose-binding protei 26.5 2.5E+02 0.0087 26.5 9.4 85 40-126 111-201 (271)
370 3d8u_A PURR transcriptional re 26.5 2.7E+02 0.0093 26.2 9.7 49 66-117 21-69 (275)
371 1fmt_A Methionyl-tRNA FMet for 26.5 1.9E+02 0.0066 29.1 8.7 83 30-120 6-94 (314)
372 1ys7_A Transcriptional regulat 26.4 3.4E+02 0.011 24.8 10.1 64 51-127 8-74 (233)
373 3l6u_A ABC-type sugar transpor 26.3 1.3E+02 0.0044 29.0 7.3 86 39-126 117-214 (293)
374 3gi1_A LBP, laminin-binding pr 26.2 2E+02 0.0067 28.5 8.6 51 76-127 195-247 (286)
375 3lft_A Uncharacterized protein 26.2 2.8E+02 0.0095 26.8 9.8 49 66-115 19-70 (295)
376 2rgy_A Transcriptional regulat 26.2 2.3E+02 0.0079 27.1 9.2 50 66-118 26-78 (290)
377 3ihk_A Thiamin pyrophosphokina 26.2 1.3E+02 0.0045 28.6 7.0 73 44-123 31-105 (218)
378 3h5t_A Transcriptional regulat 26.1 1.8E+02 0.0062 29.2 8.7 86 39-126 178-287 (366)
379 1zgz_A Torcad operon transcrip 26.1 2.5E+02 0.0085 22.4 9.4 64 51-127 3-69 (122)
380 2c92_A 6,7-dimethyl-8-ribityll 26.0 71 0.0024 29.0 4.7 60 51-115 18-80 (160)
381 1jlj_A Gephyrin; globular alph 25.9 1.1E+02 0.0039 28.3 6.3 61 68-130 37-103 (189)
382 1jfl_A Aspartate racemase; alp 25.8 1.4E+02 0.0046 28.3 7.1 67 43-112 109-191 (228)
383 3re1_A Uroporphyrinogen-III sy 25.8 30 0.001 34.0 2.4 68 48-121 139-206 (269)
384 3miz_A Putative transcriptiona 25.8 84 0.0029 30.7 5.8 86 39-126 120-216 (301)
385 1yio_A Response regulatory pro 25.6 1.9E+02 0.0066 26.0 8.1 65 51-128 5-72 (208)
386 3d3j_A Enhancer of mRNA-decapp 25.6 2.4E+02 0.0082 28.3 9.1 53 51-105 133-185 (306)
387 3mel_A Thiamin pyrophosphokina 25.6 94 0.0032 29.7 5.8 73 44-123 35-109 (222)
388 4iin_A 3-ketoacyl-acyl carrier 25.3 3.9E+02 0.013 25.4 10.7 73 39-117 43-117 (271)
389 3gyb_A Transcriptional regulat 25.2 80 0.0027 30.3 5.5 64 51-119 6-71 (280)
390 3qk7_A Transcriptional regulat 25.2 1.4E+02 0.0048 28.9 7.3 49 66-118 28-76 (294)
391 3ufx_B Succinyl-COA synthetase 25.1 2E+02 0.007 29.9 8.8 77 51-131 248-328 (397)
392 1m5w_A Pyridoxal phosphate bio 24.9 3.2E+02 0.011 26.4 9.2 75 20-111 67-152 (243)
393 3snk_A Response regulator CHEY 24.8 69 0.0024 26.8 4.4 65 51-128 15-83 (135)
394 3inp_A D-ribulose-phosphate 3- 24.8 85 0.0029 30.6 5.4 83 38-127 123-213 (246)
395 2hqb_A Transcriptional activat 24.8 4.8E+02 0.016 25.2 11.5 76 49-127 125-201 (296)
396 3kcq_A Phosphoribosylglycinami 24.8 1.4E+02 0.0047 28.4 6.8 79 32-121 15-96 (215)
397 1pq4_A Periplasmic binding pro 24.7 1.8E+02 0.0061 28.8 8.0 54 76-130 206-259 (291)
398 3dzd_A Transcriptional regulat 24.7 2.8E+02 0.0097 28.3 9.8 65 51-128 1-68 (368)
399 2oqr_A Sensory transduction pr 24.5 3.6E+02 0.012 24.6 9.9 64 51-127 5-71 (230)
400 3h75_A Periplasmic sugar-bindi 24.5 1.8E+02 0.0063 28.9 8.2 88 39-127 127-225 (350)
401 1rvv_A Riboflavin synthase; tr 24.5 51 0.0018 29.7 3.4 61 51-115 13-79 (154)
402 2ioy_A Periplasmic sugar-bindi 24.4 2.7E+02 0.0092 26.6 9.2 48 66-116 19-66 (283)
403 1s8n_A Putative antiterminator 24.4 3.7E+02 0.013 24.0 9.8 64 51-127 14-81 (205)
404 3g23_A Peptidase U61, LD-carbo 24.4 1.1E+02 0.0037 30.3 6.2 68 51-118 4-79 (274)
405 3n0x_A Possible substrate bind 24.3 64 0.0022 32.8 4.7 71 41-114 133-208 (374)
406 2f62_A Nucleoside 2-deoxyribos 24.2 3.7E+02 0.013 24.1 9.3 69 51-123 10-86 (161)
407 3gbc_A Pyrazinamidase/nicotina 24.2 2.8E+02 0.0097 25.2 8.8 68 40-110 115-182 (186)
408 2hsg_A Glucose-resistance amyl 24.2 2.5E+02 0.0084 27.7 9.1 49 66-117 78-126 (332)
409 3jvd_A Transcriptional regulat 24.2 2.2E+02 0.0074 28.3 8.7 47 66-116 82-128 (333)
410 3o8l_A 6-phosphofructokinase, 24.2 1.1E+02 0.0039 34.8 7.0 36 92-127 94-129 (762)
411 1v4v_A UDP-N-acetylglucosamine 24.0 4.5E+02 0.015 26.0 11.3 25 95-119 79-103 (376)
412 3miz_A Putative transcriptiona 23.9 3E+02 0.01 26.4 9.6 69 45-116 8-79 (301)
413 3k94_A Thiamin pyrophosphokina 23.9 69 0.0024 30.7 4.5 71 45-122 37-108 (223)
414 2iyf_A OLED, oleandomycin glyc 23.9 4.6E+02 0.016 26.6 11.5 80 39-131 25-125 (430)
415 3sho_A Transcriptional regulat 23.8 3.6E+02 0.012 24.0 9.5 87 36-133 27-114 (187)
416 3i6i_A Putative leucoanthocyan 23.8 3.6E+02 0.012 26.7 10.4 88 31-127 14-103 (346)
417 3clk_A Transcription regulator 23.7 1.7E+02 0.0059 28.1 7.7 64 51-117 9-75 (290)
418 3apt_A Methylenetetrahydrofola 23.7 1.4E+02 0.0047 30.1 6.9 96 21-119 14-111 (310)
419 4gmk_A Ribose-5-phosphate isom 23.5 71 0.0024 30.8 4.4 31 91-121 2-34 (228)
420 2qu7_A Putative transcriptiona 23.3 1.2E+02 0.0041 29.2 6.3 49 66-117 25-73 (288)
421 3nq4_A 6,7-dimethyl-8-ribityll 23.2 60 0.0021 29.3 3.6 62 51-115 13-80 (156)
422 3q9s_A DNA-binding response re 23.2 2.8E+02 0.0095 26.2 8.9 64 51-127 38-104 (249)
423 1tv5_A Dhodehase, dihydroorota 23.2 2.1E+02 0.0071 30.4 8.5 34 85-118 302-335 (443)
424 3huu_A Transcription regulator 23.2 71 0.0024 31.3 4.6 83 39-126 133-221 (305)
425 2qsj_A DNA-binding response re 23.1 2.7E+02 0.0091 23.5 8.1 64 52-128 5-74 (154)
426 3ono_A Ribose/galactose isomer 23.0 2.4E+02 0.0081 26.8 7.8 64 52-116 5-75 (214)
427 3qi7_A Putative transcriptiona 22.9 3.1E+02 0.011 28.3 9.5 85 41-127 147-245 (371)
428 3o8o_B 6-phosphofructokinase s 22.8 1.4E+02 0.0049 34.0 7.4 35 93-127 84-118 (766)
429 1ybh_A Acetolactate synthase, 22.7 1.8E+02 0.0061 32.0 8.2 43 37-83 203-245 (590)
430 4amg_A Snogd; transferase, pol 22.6 2.1E+02 0.0073 28.8 8.4 33 96-131 117-149 (400)
431 2yr1_A 3-dehydroquinate dehydr 22.6 4.1E+02 0.014 25.7 10.0 56 75-130 136-193 (257)
432 2vk2_A YTFQ, ABC transporter p 22.6 2.3E+02 0.0079 27.4 8.4 49 66-117 20-68 (306)
433 1ovm_A Indole-3-pyruvate decar 22.5 89 0.003 34.1 5.6 43 38-82 199-241 (552)
434 3opy_A 6-phosphofructo-1-kinas 22.4 1.4E+02 0.0047 35.1 7.1 36 93-128 290-325 (989)
435 3c3m_A Response regulator rece 22.3 3.3E+02 0.011 22.4 10.1 64 51-127 4-70 (138)
436 4d9b_A D-cysteine desulfhydras 22.1 1.5E+02 0.0052 30.0 7.0 25 96-120 187-213 (342)
437 1hqk_A 6,7-dimethyl-8-ribityll 22.0 52 0.0018 29.7 2.9 61 51-115 13-79 (154)
438 3d02_A Putative LACI-type tran 21.9 3.4E+02 0.012 25.9 9.5 49 66-116 22-70 (303)
439 3rfo_A Methionyl-tRNA formyltr 21.9 1.5E+02 0.0052 29.9 6.8 85 30-121 7-96 (317)
440 3dzc_A UDP-N-acetylglucosamine 21.8 1.7E+02 0.0059 30.2 7.5 27 93-119 97-123 (396)
441 1di6_A MOGA, molybdenum cofact 21.8 91 0.0031 29.2 4.7 61 68-130 26-91 (195)
442 3ksm_A ABC-type sugar transpor 21.8 3.6E+02 0.012 25.2 9.5 51 66-117 18-69 (276)
443 1q6z_A BFD, BFDC, benzoylforma 21.7 1.5E+02 0.0051 32.1 7.2 44 37-82 189-232 (528)
444 3kyj_B CHEY6 protein, putative 21.7 3.4E+02 0.012 22.5 8.5 64 51-127 14-83 (145)
445 2egz_A 3-dehydroquinate dehydr 21.7 4.5E+02 0.015 24.7 9.8 62 68-130 98-161 (219)
446 1gud_A ALBP, D-allose-binding 21.6 2.5E+02 0.0085 26.9 8.4 85 40-126 120-212 (288)
447 1kz1_A 6,7-dimethyl-8-ribityll 21.6 64 0.0022 29.3 3.4 61 51-115 18-85 (159)
448 2gwr_A DNA-binding response re 21.4 2E+02 0.007 26.7 7.4 63 51-126 6-71 (238)
449 2h3h_A Sugar ABC transporter, 21.4 3.2E+02 0.011 26.4 9.2 51 66-118 18-68 (313)
450 1k66_A Phytochrome response re 21.4 2.7E+02 0.0091 23.0 7.6 63 51-126 7-84 (149)
451 3o1l_A Formyltetrahydrofolate 21.3 3.1E+02 0.011 27.4 8.9 83 29-120 106-194 (302)
452 3t8y_A CHEB, chemotaxis respon 21.1 2.7E+02 0.0092 24.0 7.8 66 51-127 26-94 (164)
453 3d3k_A Enhancer of mRNA-decapp 21.0 2.4E+02 0.0082 27.5 7.9 53 51-105 86-138 (259)
454 1ozh_A ALS, acetolactate synth 21.0 1.4E+02 0.0047 32.8 6.8 45 37-83 196-240 (566)
455 2ayx_A Sensor kinase protein R 20.7 2.6E+02 0.009 26.5 8.2 65 51-128 130-197 (254)
456 2ioy_A Periplasmic sugar-bindi 20.6 2.7E+02 0.0092 26.5 8.3 86 39-126 110-202 (283)
457 4dad_A Putative pilus assembly 20.6 2.3E+02 0.0079 23.6 7.0 66 51-128 21-91 (146)
458 2q02_A Putative cytoplasmic pr 20.5 5.3E+02 0.018 24.1 11.1 84 33-116 16-107 (272)
459 2vbi_A Pyruvate decarboxylase; 20.4 2.9E+02 0.01 30.0 9.4 43 38-82 199-241 (566)
460 3lzd_A DPH2; diphthamide biosy 20.3 2.1E+02 0.0071 29.8 7.5 73 38-117 43-116 (378)
461 3tqd_A 3-deoxy-manno-octuloson 20.2 3.9E+02 0.013 25.7 9.3 89 32-130 31-124 (256)
462 3ot5_A UDP-N-acetylglucosamine 20.2 1.2E+02 0.004 31.6 5.7 25 93-117 100-124 (403)
463 3bil_A Probable LACI-family tr 20.2 2.4E+02 0.0081 28.1 8.1 85 39-126 173-260 (348)
464 4e3z_A Putative oxidoreductase 20.1 5E+02 0.017 24.6 10.2 72 39-116 40-113 (272)
No 1
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=100.00 E-value=1e-72 Score=610.02 Aligned_cols=383 Identities=27% Similarity=0.420 Sum_probs=349.0
Q ss_pred CCceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHH
Q psy2427 19 DKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLE 98 (660)
Q Consensus 19 ~~~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~ 98 (660)
|..|.|.+| ++|+||.|++++++++++++|.+|++||||+++.+.++.+++.+.|++.|+++.+|++++++|+.+.|++
T Consensus 1 M~~f~f~~p-~~i~~G~g~~~~l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~ 79 (383)
T 3ox4_A 1 MASSTFYIP-FVNEMGEGSLEKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLE 79 (383)
T ss_dssp -CCEEEECC-SEEEESTTHHHHHHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHH
T ss_pred CCCceecCC-CeEEECCCHHHHHHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHH
Confidence 567888886 8999999999999999999999999999999988887889999999999999999999999999999999
Q ss_pred HHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEe
Q psy2427 99 ATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFD 178 (660)
Q Consensus 99 ~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~ 178 (660)
+++.+++.++|+||||||||++|+||++|..+.++ .++|||... + +...+.+|+|+||||+|||||+|+++|++
T Consensus 80 ~~~~~~~~~~D~IIavGGGsv~D~aK~ia~~~~~~-~~~~d~~~~----~-~~~~~~~p~i~IPTTagtgSe~t~~avi~ 153 (383)
T 3ox4_A 80 GLKILKDNNSDFVISLGGGSPHDCAKAIALVATNG-GEVKDYEGI----D-KSKKPALPLMSINTTAGTASEMTRFCIIT 153 (383)
T ss_dssp HHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHSC-SSGGGGCEE----S-CCSSCCSCEEEEECSSSCCTTTCSEEEEE
T ss_pred HHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCC-CCHHHHhcc----c-ccccCCCCEEEEeCCCCchhhcCCeEEEE
Confidence 99999999999999999999999999999999875 789999532 1 23456699999999999999999999999
Q ss_pred eCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q psy2427 179 YEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDV 258 (660)
Q Consensus 179 ~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 258 (660)
+++++.|.++.++..+|+++|+||+++.++|++++++|++|+|+|++|+|++. ..
T Consensus 154 ~~~~~~K~~i~~~~~~P~~~i~Dp~l~~tlP~~~~aag~~Dal~ha~Eay~s~-------------------~~------ 208 (383)
T 3ox4_A 154 DEVRHVKMAIVDRHVTPMVSVNDPLLMVGMPKGLTAATGMDALTHAFEAYSST-------------------AA------ 208 (383)
T ss_dssp ETTTTEEEEEECGGGSCSEEEECGGGTTTCCHHHHHHHHHHHHHHHHHHHHCT-------------------TC------
T ss_pred ECCCCeEEeecCCCccceEEEECcHHhcCCCHHHHHHHHHHHHHHHHHHHhcC-------------------CC------
Confidence 98888999999999999999999999999999999999999999999999872 23
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHH
Q psy2427 259 WARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSV 338 (660)
Q Consensus 259 la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~av 338 (660)
T Consensus 209 -------------------------------------------------------------------------------- 208 (383)
T 3ox4_A 209 -------------------------------------------------------------------------------- 208 (383)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccccc
Q psy2427 339 VMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDP 418 (660)
Q Consensus 339 ai~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~ 418 (660)
T Consensus 209 -------------------------------------------------------------------------------- 208 (383)
T 3ox4_A 209 -------------------------------------------------------------------------------- 208 (383)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q psy2427 419 LHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLE 498 (660)
Q Consensus 419 ~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ 498 (660)
+|++|.+|+++++++.++++++++|+.|.+
T Consensus 209 --------------------------------------------------~~~td~~a~~ai~~i~~~l~~a~~~~~d~~ 238 (383)
T 3ox4_A 209 --------------------------------------------------TPITDACALKAASMIAKNLKTACDNGKDMP 238 (383)
T ss_dssp --------------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred --------------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 345566666666677777777777888999
Q ss_pred HHHHHHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHH
Q psy2427 499 ARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAE 578 (660)
Q Consensus 499 ar~~~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~ 578 (660)
+|++|+||+++||++|+++|+|++|+|+|+||+.| +++||+++++++|+||+||.+.+++||+++++
T Consensus 239 ar~~m~~as~laG~a~~~~g~g~~Hai~h~l~~~~-------------~i~HG~~~ai~lp~v~~~~~~~~~~~~~~la~ 305 (383)
T 3ox4_A 239 AREAMAYAQFLAGMAFNNASLGYVHAMAHQLGGYY-------------NLPHGVCNAVLLPHVLAYNASVVAGRLKDVGV 305 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHS-------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccchhHHHhhhHHhcCc-------------CCChHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999999999999999999999999974 79999999999999999999999999999999
Q ss_pred HhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHHHHh
Q psy2427 579 LLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSM 657 (660)
Q Consensus 579 ~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~a~ 657 (660)
.+|.+..+.++++.+..+++++++|++++|+|++|+|+|+++++++++++.++. +.+..+||+++|+||+++||+++|
T Consensus 306 ~~g~~~~~~~~~~~a~~~i~~~~~l~~~lglP~~L~~~gi~~~~i~~ia~~a~~-~~~~~~np~~~t~~di~~i~~~a~ 383 (383)
T 3ox4_A 306 AMGLDIANLGDKEGAEATIQAVRDLAASIGIPANLTELGAKKEDVPLLADHALK-DACALTNPRQGDQKEVEELFLSAF 383 (383)
T ss_dssp HTTCSCTTSCHHHHHHHHHHHHHHHHHHTTCCSSSTTTTCCGGGHHHHHHHHTT-SGGGGGCSSCCCHHHHHHHHHHTC
T ss_pred HhCCCcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHh-cccccCCCCCCCHHHHHHHHHHhC
Confidence 999887777788888999999999999999999999999999999999999986 455678999999999999999986
No 2
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=100.00 E-value=2.6e-67 Score=570.06 Aligned_cols=381 Identities=27% Similarity=0.448 Sum_probs=340.6
Q ss_pred ceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECcccccc--chHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHH
Q psy2427 21 EYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKL--APVKATLDSLTRHGVKFELFDKVRVEPTGDSFLE 98 (660)
Q Consensus 21 ~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~--~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~ 98 (660)
.|.|.+| ++|+||.|++++++++++++|.+|++||||+++.+. ++.+++.+.|++.|+++.+|++++++|+.+.|++
T Consensus 5 ~~~~~~p-~~i~~G~g~~~~l~~~l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~ 83 (387)
T 3bfj_A 5 MFDYLVP-NVNFFGPNAISVVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRD 83 (387)
T ss_dssp CEEEECC-SEEEESTTGGGGHHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHH
T ss_pred ceeeeCC-CeEEECCCHHHHHHHHHHHcCCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHH
Confidence 4567765 899999999999999999998899999999998887 6889999999999999999999999999999999
Q ss_pred HHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEe
Q psy2427 99 ATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFD 178 (660)
Q Consensus 99 ~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~ 178 (660)
+++.+++.++|+||||||||++|+||++|..+.++ .++|||... .+...+.+|+|+||||+|||||+|++++++
T Consensus 84 ~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~-~~~~d~~~~-----~~~~~~~~p~i~IPTT~gtgSevt~~avi~ 157 (387)
T 3bfj_A 84 GLAVFRREQCDIIVTVGGGSPHDCGKGIGIAATHE-GDLYQYAGI-----ETLTNPLPPIVAVNTTAGTASEVTRHCVLT 157 (387)
T ss_dssp HHHHHHHTTCCEEEEEESHHHHHHHHHHHHHHHSS-SCSGGGCBS-----SCCCSCCCCEEEEECSTTCCGGGCSEEEEE
T ss_pred HHHHHHhcCCCEEEEeCCcchhhHHHHHHHHHhCC-CCHHHHhcc-----cccCCCCCCEEEEeCCCCccccccCcEEEE
Confidence 99999999999999999999999999999998875 688998731 223445699999999999999999999999
Q ss_pred eCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q psy2427 179 YEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDV 258 (660)
Q Consensus 179 ~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 258 (660)
+++++.|..+.++..+|+++|+||+++.++|++++++|++|+|+|++|+|++. ..+
T Consensus 158 ~~~~~~K~~i~~~~~~P~~vi~Dp~l~~tlP~~~~aag~~Dal~haiE~~~s~-------------------~~~----- 213 (387)
T 3bfj_A 158 NTETKVKFVIVSWRNLPSVSINDPLLMIGKPAALTAATGMDALTHAVEAYISK-------------------DAN----- 213 (387)
T ss_dssp ETTTTEEEEEECGGGSCSEEEECGGGTTTCCHHHHHHHHHHHHHHHHHHHHST-------------------TCC-----
T ss_pred EcCCCceeeccCCccccCEEEEChHhhcCCCHHHHHHHHHHHHHHHHHHHhcC-------------------CCC-----
Confidence 98888899999888999999999999999999999999999999999999872 223
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHH
Q psy2427 259 WARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSV 338 (660)
Q Consensus 259 la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~av 338 (660)
T Consensus 214 -------------------------------------------------------------------------------- 213 (387)
T 3bfj_A 214 -------------------------------------------------------------------------------- 213 (387)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccccc
Q psy2427 339 VMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDP 418 (660)
Q Consensus 339 ai~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~ 418 (660)
T Consensus 214 -------------------------------------------------------------------------------- 213 (387)
T 3bfj_A 214 -------------------------------------------------------------------------------- 213 (387)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q psy2427 419 LHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLE 498 (660)
Q Consensus 419 ~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ 498 (660)
|+++.+|+++++++.++++++++|+.|.+
T Consensus 214 ---------------------------------------------------~~~d~~a~~ai~~i~~~l~~~v~d~~d~~ 242 (387)
T 3bfj_A 214 ---------------------------------------------------PVTDAAAMQAIRLIARNLRQAVALGSNLQ 242 (387)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 34455566666777777777777888999
Q ss_pred HHHHHHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHH
Q psy2427 499 ARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAE 578 (660)
Q Consensus 499 ar~~~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~ 578 (660)
+|++|+||+++||++|.|+|++++|+|+|.|++.| +++||+++++++|+||+||.+.+++|+.++++
T Consensus 243 ar~~~~~as~laG~a~~~~g~~~~Hai~h~l~~~~-------------~i~HG~avai~lp~v~~~~~~~~~~~~~~la~ 309 (387)
T 3bfj_A 243 AREYMAYASLLAGMAFNNANLGYVHAMAHQLGGLY-------------DMPHGVANAVLLPHVARYNLIANPEKFADIAE 309 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHHHHGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCcHHHHHhhhHHhcCc-------------CCChHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999864 69999999999999999999999999999999
Q ss_pred HhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHHHHh
Q psy2427 579 LLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSM 657 (660)
Q Consensus 579 ~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~a~ 657 (660)
.+|....+.+.++.+..+++++++|++++|+|++|+|+|+++++++++++.++.+.+ ..+||+++|+||+++||+++|
T Consensus 310 ~lg~~~~~~~~~~~~~~~~~~i~~l~~~~glp~~l~~~gi~~~~~~~~a~~a~~~~~-~~~np~~~~~~~i~~i~~~~~ 387 (387)
T 3bfj_A 310 LMGENITGLSTLDAAEKAIAAITRLSMDIGIPQHLRDLGVKETDFPYMAEMALKDGN-AFSNPRKGNEQEIAAIFRQAF 387 (387)
T ss_dssp HTTCCCTTCCHHHHHHHHHHHHHHHHHHTTCCCCGGGGTCCGGGHHHHHHHHHHSGG-GTTCSSCCCHHHHHHHHHHHC
T ss_pred HhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhCcc-ccCCCCCCCHHHHHHHHHHhC
Confidence 999765555667777888999999999999999999999999999999999986544 456899999999999999986
No 3
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=100.00 E-value=1.7e-66 Score=554.90 Aligned_cols=350 Identities=23% Similarity=0.322 Sum_probs=315.8
Q ss_pred CCceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHH
Q psy2427 19 DKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLE 98 (660)
Q Consensus 19 ~~~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~ 98 (660)
|+.|.|...|++|+||.|++++++++++++|.+|++||||+.... ..+++.+.|++. .+.+|++++++|+.+.|++
T Consensus 5 M~~f~~~~~p~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~--~~~~v~~~L~~~--~~~~f~~v~~~p~~~~v~~ 80 (358)
T 3jzd_A 5 SQPFIYEAHAARVVFGAGSSSQVAAEVERLGAKRALVLCTPNQQA--EAERIADLLGPL--SAGVYAGAVMHVPIESARD 80 (358)
T ss_dssp CCCEEEEECCEEEEESTTGGGGHHHHHHHTTCSCEEEECCGGGHH--HHHHHHHHHGGG--EEEEECCCCTTCBHHHHHH
T ss_pred ccCceeecCCceEEECCCHHHHHHHHHHHhCCCeEEEEeCCcHHH--HHHHHHHHhccC--CEEEecCCcCCCCHHHHHH
Confidence 888999844699999999999999999999989999999998653 569999999876 5678999999999999999
Q ss_pred HHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEe
Q psy2427 99 ATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFD 178 (660)
Q Consensus 99 ~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~ 178 (660)
+++.+++.++|+||||||||++|+||++|.... +|+|+||||+ ||||+|++++++
T Consensus 81 ~~~~~~~~~~D~IIavGGGsviD~aK~iA~~~~------------------------~p~i~IPTT~-tgSevt~~~v~~ 135 (358)
T 3jzd_A 81 ATARAREAGADCAVAVGGGSTTGLGKAIALETG------------------------MPIVAIPTTY-AGSEVTPVYGLT 135 (358)
T ss_dssp HHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHC------------------------CCEEEEECSS-CCGGGCSEEEEE
T ss_pred HHHHhhccCCCEEEEeCCcHHHHHHHHHHhccC------------------------CCEEEEeCCc-cccccccceEEc
Confidence 999999999999999999999999999998543 8999999997 899999998887
Q ss_pred eCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q psy2427 179 YEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDV 258 (660)
Q Consensus 179 ~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 258 (660)
+ .+.|..+.++..+|+++|+||+++.++|++++++|++|+|+|++|+|++. .
T Consensus 136 ~--~~~K~~~~~~~~~P~~vi~Dp~l~~tlP~~~~aag~~Dal~ha~Eay~s~-------------------~------- 187 (358)
T 3jzd_A 136 E--AGTKRTGRDPRVLPRTVIYDPALTVGLPRGLSVTSALNAIAHAAEGLYAR-------------------D------- 187 (358)
T ss_dssp E--TTEEEEEECGGGSCSEEEECGGGGTTSCHHHHHHHHHHHHHHHHHHTTCT-------------------T-------
T ss_pred C--CCeeEeeccCCcCCcEEEEChHHHcCCCHHHHHHHHHHHHHHHHHHHhcC-------------------C-------
Confidence 4 47799998899999999999999999999999999999999999999871 2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHH
Q psy2427 259 WARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSV 338 (660)
Q Consensus 259 la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~av 338 (660)
T Consensus 188 -------------------------------------------------------------------------------- 187 (358)
T 3jzd_A 188 -------------------------------------------------------------------------------- 187 (358)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccccc
Q psy2427 339 VMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDP 418 (660)
Q Consensus 339 ai~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~ 418 (660)
T Consensus 188 -------------------------------------------------------------------------------- 187 (358)
T 3jzd_A 188 -------------------------------------------------------------------------------- 187 (358)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q psy2427 419 LHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLE 498 (660)
Q Consensus 419 ~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ 498 (660)
.+|++|.+|+++++++.++++++++|+.|++
T Consensus 188 -------------------------------------------------~~~~td~~a~~ai~~i~~~l~~a~~~~~d~~ 218 (358)
T 3jzd_A 188 -------------------------------------------------ANPVMSLMAEEGIRALAAGIPAVFNDPADLD 218 (358)
T ss_dssp -------------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred -------------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 2455666666677777777777777888999
Q ss_pred HHHHHHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHH
Q psy2427 499 ARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAE 578 (660)
Q Consensus 499 ar~~~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~ 578 (660)
+|++|+|||++||++|+++|+|++|+|+|+||+.| ++|||+++++++|+||+||.+.+++||+++++
T Consensus 219 aR~~m~~as~laG~a~~~~g~g~~Hai~h~lg~~~-------------~i~HG~~~aillp~v~~~~~~~~~~~~~~~a~ 285 (358)
T 3jzd_A 219 ARSQCLYGAWLCGTVLGGVGMALHHKLCHTLGGSF-------------NLPHAETHTIVLPHALAYNAAAVPEAMARIRR 285 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHHHHGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHhhccc-------------CCchhHhHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999975 79999999999999999999999999999999
Q ss_pred HhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHHHHhh
Q psy2427 579 LLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSMS 658 (660)
Q Consensus 579 ~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~a~~ 658 (660)
.+|.+.. ..++++++|++++|+|++|+|+|+++++++++++.|+.+ . .+||+++|+||+++||+++|.
T Consensus 286 ~lg~~~~---------~~~~~i~~l~~~lglP~~L~e~Gi~~~~i~~~a~~a~~~-~--~~np~~~~~~di~~i~~~a~~ 353 (358)
T 3jzd_A 286 ATGAGEQ---------SAAATLFDLAQRHGAPVALRDIGMREEDLDRAADIALAS-P--YWNPRPIEREPIRALLQAAYE 353 (358)
T ss_dssp HHTCTTS---------CHHHHHHHHHHHTTCCCCGGGGTCCGGGHHHHHHHHTTS-C--CCCSSCCCHHHHHHHHHHHHH
T ss_pred HhCCCch---------HHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhc-c--cCCCCCCCHHHHHHHHHHHhc
Confidence 9987543 136899999999999999999999999999999999854 2 479999999999999999997
Q ss_pred c
Q psy2427 659 V 659 (660)
Q Consensus 659 ~ 659 (660)
+
T Consensus 354 g 354 (358)
T 3jzd_A 354 G 354 (358)
T ss_dssp T
T ss_pred C
Confidence 6
No 4
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=1.5e-66 Score=554.70 Aligned_cols=348 Identities=21% Similarity=0.314 Sum_probs=314.4
Q ss_pred CCCceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHH
Q psy2427 18 PDKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFL 97 (660)
Q Consensus 18 ~~~~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~ 97 (660)
-|+.|.|...|++|+||.|++++++++++++|.+|++||||+... +..+++.+.|++. .+.+|++++++|+.+.|+
T Consensus 2 ~M~~F~~~~~p~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~--~~~v~~~v~~~p~~~~v~ 77 (353)
T 3hl0_A 2 HMQPFVYMAAPARIVFSAGSSADVAEEIRRLGLSRALVLSTPQQK--GDAEALASRLGRL--AAGVFSEAAMHTPVEVTK 77 (353)
T ss_dssp -CCCCCCCCCCCCEEECTTGGGGHHHHHHHTTCCCEEEECCGGGH--HHHHHHHHHHGGG--EEEEECCCCTTCBHHHHH
T ss_pred CccceeeecCCceEEECcCHHHHHHHHHHHhCCCEEEEEecCchh--hHHHHHHHHHhhC--CcEEecCcCCCCcHHHHH
Confidence 377888883458999999999999999999998999999999854 4569999999875 567899999999999999
Q ss_pred HHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEE
Q psy2427 98 EATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIF 177 (660)
Q Consensus 98 ~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi 177 (660)
++++.+++.++|+||||||||++|+||++|.... +|+|+||||+ ||||+|+++++
T Consensus 78 ~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~~~------------------------~p~i~IPTTa-tgSe~t~~~v~ 132 (353)
T 3hl0_A 78 TAVEAYRAAGADCVVSLGGGSTTGLGKAIALRTD------------------------AAQIVIPTTY-AGSEVTPILGQ 132 (353)
T ss_dssp HHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHHC------------------------CEEEEEECSS-CCGGGCCEEEE
T ss_pred HHHHHHhccCCCEEEEeCCcHHHHHHHHHHhccC------------------------CCEEEEeCCc-hhhhccCceEE
Confidence 9999999999999999999999999999998543 8999999999 99999999998
Q ss_pred eeCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q psy2427 178 DYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSD 257 (660)
Q Consensus 178 ~~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~ 257 (660)
+ +.+.|.++.++..+|+++|+||+++.++|++++++|++|+|+|++|+|++. ..
T Consensus 133 ~--~~~~K~~~~~~~~~P~~vi~Dp~l~~tlP~~~~aag~~Dal~ha~Eay~s~-------------------~~----- 186 (353)
T 3hl0_A 133 T--ENGVKTTMRGPEILPEVVIYDAELTLGLPVAISMTSGLNAMAHAAEALYAR-------------------DR----- 186 (353)
T ss_dssp E--ETTEEEEEECTTTSCSEEEECGGGGTTSCHHHHHHHHHHHHHHHHHHTTCT-------------------TC-----
T ss_pred c--CCCeeEeeecCCcCccEEEEChHHHcCCCHHHHHHHHHHHHHHHHHHHhcC-------------------CC-----
Confidence 7 347899999999999999999999999999999999999999999999872 22
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhH
Q psy2427 258 VWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLS 337 (660)
Q Consensus 258 ~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~a 337 (660)
T Consensus 187 -------------------------------------------------------------------------------- 186 (353)
T 3hl0_A 187 -------------------------------------------------------------------------------- 186 (353)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccc
Q psy2427 338 VVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLID 417 (660)
Q Consensus 338 vai~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d 417 (660)
T Consensus 187 -------------------------------------------------------------------------------- 186 (353)
T 3hl0_A 187 -------------------------------------------------------------------------------- 186 (353)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCH
Q psy2427 418 PLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDL 497 (660)
Q Consensus 418 ~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~ 497 (660)
+|++|.+|+++++++.++++++++|++|+
T Consensus 187 ---------------------------------------------------~~~td~~a~~ai~~i~~~l~~a~~~~~d~ 215 (353)
T 3hl0_A 187 ---------------------------------------------------NPIASMMAVEGLRAMIEALPVVRQAPHDI 215 (353)
T ss_dssp ---------------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred ---------------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 34556666667777777777777788899
Q ss_pred HHHHHHHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHH
Q psy2427 498 EARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAA 577 (660)
Q Consensus 498 ~ar~~~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia 577 (660)
++|++|+||+++||++|+++|+|.+|+|+|+||+.| +++||+++++++|+||+||.+.+++||++++
T Consensus 216 ~aR~~m~~as~laG~a~~~~g~g~~H~i~h~l~~~~-------------~i~HG~~~ai~lp~v~~~~~~~~~~~~~~~a 282 (353)
T 3hl0_A 216 GARETALYGAWLCGTVLGAVGMSLHHKLCHTLGGSL-------------DLPHAETHAVLLPHTIAYVEEAAPNLLAPLA 282 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHHHHHTTCTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCcHHHHHHhhHhhhcc-------------CCCHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999999999999999999999999975 7999999999999999999999999999999
Q ss_pred HHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHHHHh
Q psy2427 578 ELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSM 657 (660)
Q Consensus 578 ~~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~a~ 657 (660)
++||.+ +++++++|++++|+|++|+|+|+++++++++++.|+.+ . .+||+++|+||+++||+++|
T Consensus 283 ~~lg~~------------~~~~i~~l~~~lglP~~L~e~Gi~~~~i~~~a~~a~~~-~--~~np~~~~~~di~~i~~~a~ 347 (353)
T 3hl0_A 283 ALVGGR------------AGAGLFDFAARLGAPSSLAALGVGADDLDPMAELATAN-P--YWCPRPIEKTAIRDLLQRAF 347 (353)
T ss_dssp HHHTSC------------HHHHHHHHHHHHTCCCCTGGGTCCGGGHHHHHHHHTTS-C--CCCSSCCCHHHHHHHHHHHH
T ss_pred HHcCcH------------HHHHHHHHHHHcCCCccHHhcCCCHHHHHHHHHHHHhc-c--cCCCCCCCHHHHHHHHHHHh
Confidence 999864 36899999999999999999999999999999999854 2 47999999999999999999
Q ss_pred hc
Q psy2427 658 SV 659 (660)
Q Consensus 658 ~~ 659 (660)
.|
T Consensus 348 ~g 349 (353)
T 3hl0_A 348 EG 349 (353)
T ss_dssp HT
T ss_pred cC
Confidence 76
No 5
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=100.00 E-value=4.2e-66 Score=560.59 Aligned_cols=379 Identities=26% Similarity=0.395 Sum_probs=337.5
Q ss_pred eEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHH
Q psy2427 23 AFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKF 102 (660)
Q Consensus 23 ~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~ 102 (660)
.|.+| ++|+||.|++++++++++++|.+|++||||+++.+.++.+++.+.|++.|+++.+|++++++|+.+.|+++++.
T Consensus 5 ~f~~p-~~i~~G~g~~~~l~~~l~~~g~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~ 83 (386)
T 1rrm_A 5 RMILN-ETAWFGRGAVGALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGV 83 (386)
T ss_dssp EEECC-SEEEESTTGGGGHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHH
T ss_pred cccCC-ceEEECcCHHHHHHHHHHHcCCCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHH
Confidence 56664 89999999999999999999889999999999888778899999999999999999999999999999999999
Q ss_pred hHhcCCCEEEEecCchhhhHHHHHHhHhcCCCc--chhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeC
Q psy2427 103 VRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEA--EFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYE 180 (660)
Q Consensus 103 ~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~--~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~ 180 (660)
++++++|+||||||||++|+||++|..+.++ . ++|||... .+...+.+|+|+||||+|||||+|++++++++
T Consensus 84 ~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~-~~~~~~d~~~~-----~~~~~~~~p~i~IPTT~gtgSevt~~avi~~~ 157 (386)
T 1rrm_A 84 FQNSGADYLIAIGGGSPQDTCKAIGIISNNP-EFADVRSLEGL-----SPTNKPSVPILAIPTTAGTAAEVTINYVITDE 157 (386)
T ss_dssp HHHHTCSEEEEEESHHHHHHHHHHHHHHHCG-GGTTSGGGSEE-----CCCCSCCSCEEEEECSSSCCTTTCSEEEEEET
T ss_pred HHhcCcCEEEEeCChHHHHHHHHHHHHHhCC-CCCCHHHHhcc-----cccCCCCCCEEEEeCCCCchhhhCCcEEEEeC
Confidence 9999999999999999999999999998775 4 78898742 23345569999999999999999999999998
Q ss_pred CCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q psy2427 181 PLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260 (660)
Q Consensus 181 ~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la 260 (660)
+++.|..+.++..+|+++|+||+++.++|++++++|++|+|+|++|+|++. ..++++
T Consensus 158 ~~~~K~~i~~~~~~P~~vi~Dp~l~~tlP~~~~aag~~Dal~ha~E~~~s~-------------------~~~~~~---- 214 (386)
T 1rrm_A 158 EKRRKFVCVDPHDIPQVAFIDADMMDGMPPALKAATGVDALTHAIEGYITR-------------------GAWALT---- 214 (386)
T ss_dssp TTTEEEEEECGGGCCSEEEECGGGTTTSCHHHHHHHHHHHHHHHHHHHHST-------------------TCCHHH----
T ss_pred CCCeeEeecCCccccCEEEEChhhhcCCCHHHHHHHHHHHHHHHHHHHHcC-------------------CCCHHH----
Confidence 888899999888999999999999999999999999999999999999872 334444
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHh
Q psy2427 261 RFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVM 340 (660)
Q Consensus 261 ~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai 340 (660)
T Consensus 215 -------------------------------------------------------------------------------- 214 (386)
T 1rrm_A 215 -------------------------------------------------------------------------------- 214 (386)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccccccc
Q psy2427 341 SAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLH 420 (660)
Q Consensus 341 ~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~ 420 (660)
T Consensus 215 -------------------------------------------------------------------------------- 214 (386)
T 1rrm_A 215 -------------------------------------------------------------------------------- 214 (386)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q psy2427 421 TLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEAR 500 (660)
Q Consensus 421 ~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar 500 (660)
+.+|+++++++.++++++++ .|.++|
T Consensus 215 ----------------------------------------------------d~~a~~a~~~i~~~l~~~~~--~d~~ar 240 (386)
T 1rrm_A 215 ----------------------------------------------------DALHIKAIEIIAGALRGSVA--GDKDAG 240 (386)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHHHHHHHT--TCHHHH
T ss_pred ----------------------------------------------------HHHHHHHHHHHHHHHHHHHH--cCHHHH
Confidence 44455555555555665555 578899
Q ss_pred HHHHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHh
Q psy2427 501 SHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELL 580 (660)
Q Consensus 501 ~~~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~l 580 (660)
++|+||+++||++|.|+|+|++|+|+|.|++.| +++||+++++++|++++||.+.+++||+++++.+
T Consensus 241 ~~~~~as~laG~a~~~~g~g~~H~i~h~l~~~~-------------~i~HG~avai~lp~~~~~~~~~~~~~~~~la~~~ 307 (386)
T 1rrm_A 241 EEMALGQYVAGMGFSNVGLGLVHGMAHPLGAFY-------------NTPHGVANAILLPHVMRYNADFTGEKYRDIARVM 307 (386)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccCcHHHHHhccHHhcCc-------------CCChHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 999999999999999999999999999999874 6999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHHHHhhc
Q psy2427 581 GADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSMSV 659 (660)
Q Consensus 581 g~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~a~~~ 659 (660)
|....+.+.++.+..+++++++|++++|+|++|+|+|+++++++++++.++.+ ....+||+++|+||+++||+++|.|
T Consensus 308 g~~~~~~~~~~~~~~~~~~i~~l~~~lglp~~l~~~gi~~~~~~~~a~~a~~~-~~~~~np~~~~~~~i~~i~~~~~~g 385 (386)
T 1rrm_A 308 GVKVEGMSLEEARNAAVEAVFALNRDVGIPPHLRDVGVRKEDIPALAQAALDD-VCTGGNPREATLEDIVELYHTAWEG 385 (386)
T ss_dssp TCCCTTCCHHHHHHHHHHHHHHHHHHTTCCSSGGGGTCCGGGHHHHHHHHHTC-GGGGGCSSCCCHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHhcCCCHHHHHHHHHHHHhc-ccccCCCCCCCHHHHHHHHHHHhcC
Confidence 97655556667778889999999999999999999999999999999999865 4445789999999999999999965
No 6
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=100.00 E-value=1.2e-65 Score=559.66 Aligned_cols=383 Identities=22% Similarity=0.335 Sum_probs=339.1
Q ss_pred CCCceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEEC-ccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHH
Q psy2427 18 PDKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTD-PHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSF 96 (660)
Q Consensus 18 ~~~~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd-~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v 96 (660)
-|..|.|.+| ++|+||.|++++++++++++|.+|++|||| +.+.+.++.+++.+.|++.|+++.+|++++++|+.+.|
T Consensus 12 ~~~~f~~~~p-~~i~~G~g~l~~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v 90 (407)
T 1vlj_A 12 HMENFVFHNP-TKIVFGRGTIPKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKV 90 (407)
T ss_dssp CCCCEEECCC-CEEEESTTCGGGHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHH
T ss_pred ccCCceEecC-CeEEECcCHHHHHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHH
Confidence 4677888876 899999999999999999998899999999 55666677899999999999999999999999999999
Q ss_pred HHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceE
Q psy2427 97 LEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSI 176 (660)
Q Consensus 97 ~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~av 176 (660)
+++++.+++.++|+||||||||++|+||++|..+.++ .++|||... .....+.+|+|+||||+|||||+|+++|
T Consensus 91 ~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~-~~~~d~~~~-----~~~~~~~~p~i~IPTTagtgSevt~~av 164 (407)
T 1vlj_A 91 HEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGALYE-GDIWDAFIG-----KYQIEKALPIFDVLTISATGTEMNGNAV 164 (407)
T ss_dssp HHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTCS-SCGGGGGGT-----SCCCCCCCCEEEEECSCSSCGGGSSEEE
T ss_pred HHHHHHHHhcCCCEEEEeCChhHHHHHHHHHHHHhCC-CCHHHHhcc-----cccCCCCCCEEEEeCCCCcchhhcCeEE
Confidence 9999999999999999999999999999999998775 588998741 1223456999999999999999999999
Q ss_pred EeeCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHH
Q psy2427 177 FDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVS 256 (660)
Q Consensus 177 i~~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s 256 (660)
+++++++.|..+.++..+|+++|+||+++.++|++++++|++|+|+|++|+|++. ..+
T Consensus 165 i~~~~~~~K~~i~~~~~~P~~ai~Dp~l~~tlP~~~~aag~~Dal~haiE~~~s~-------------------~~~--- 222 (407)
T 1vlj_A 165 ITNEKTKEKYGVSSKALYPKVSIIDPSVQFTLPKEQTVYGAVDAISHILEYYFDG-------------------SSP--- 222 (407)
T ss_dssp EEETTTTEEEEEECGGGSCSEEEECGGGGGGSCHHHHHHHHHHHHHHHHHHHTSS-------------------CCC---
T ss_pred EEECCCCeEEEecCCCccceEEEEChHHhcCCCHHHHHHHHHHHHHHHHHHHHcC-------------------CCC---
Confidence 9998888899998888999999999999999999999999999999999999872 223
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchh
Q psy2427 257 DVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGL 336 (660)
Q Consensus 257 ~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~ 336 (660)
T Consensus 223 -------------------------------------------------------------------------------- 222 (407)
T 1vlj_A 223 -------------------------------------------------------------------------------- 222 (407)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccc
Q psy2427 337 SVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLI 416 (660)
Q Consensus 337 avai~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~ 416 (660)
T Consensus 223 -------------------------------------------------------------------------------- 222 (407)
T 1vlj_A 223 -------------------------------------------------------------------------------- 222 (407)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy2427 417 DPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDD 496 (660)
Q Consensus 417 d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~ 496 (660)
|+++.+|+++++++.++++++++|+.|
T Consensus 223 -----------------------------------------------------~~~d~~a~~ai~~i~~~l~~a~~d~~d 249 (407)
T 1vlj_A 223 -----------------------------------------------------EISNEIAEGTIRTIMKMTERLIEKPDD 249 (407)
T ss_dssp -----------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred -----------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 345556666677777777777777888
Q ss_pred HHHHHHHHHHHHHHhHhhhcccc-h---hhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHH
Q psy2427 497 LEARSHMHLASAMAGVGFGNAGV-H---LCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPER 572 (660)
Q Consensus 497 ~~ar~~~~~as~~ag~~~~~~g~-~---~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~ 572 (660)
.++|++|+||+++||++|.|+|+ + ++|+|+|.|++.| +++||+++++++|+||+||.+.+++|
T Consensus 250 ~~aR~~m~~as~lag~a~~~~g~~~~~~~~Hai~h~l~~~~-------------~i~HG~a~ai~lp~v~~~~~~~~~~~ 316 (407)
T 1vlj_A 250 YEARANLAWSATIALNGTMAVGRRGGEWACHRIEHSLSALY-------------DIAHGAGLAIVFPAWMKYVYRKNPAQ 316 (407)
T ss_dssp HHHHHHHHHHHHHHTSSTTTTTSCSCCCHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHHHHGGGSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHhhHHHhCc-------------CCChHHHHHHHHHHHHHHhhhhcHHH
Confidence 99999999999999999999888 7 9999999999874 79999999999999999999999999
Q ss_pred HHHHHH-HhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCC-------CCCCCCCccC
Q psy2427 573 HIEAAE-LLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQH-------RITKLAPREQ 644 (660)
Q Consensus 573 ~~~ia~-~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~-------~~~~~~P~~~ 644 (660)
++++++ ++|... ++++.+..+++++++|++++|+|++|+|+|+++++++++++.|+.+. ....+||+++
T Consensus 317 ~~~la~~~~g~~~---~~~~~~~~~~~~i~~l~~~lglP~~l~elgi~~~~i~~~a~~a~~~~~~~~rp~~~~~~np~~~ 393 (407)
T 1vlj_A 317 FERFAKKIFGFEG---EGEELILKGIEAFKNWLKKVGAPVSLKDAGIPEEDIDKIVDNVMLLVEKNLKPKGASLGRIMVL 393 (407)
T ss_dssp HHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHHHTTCCCSTGGGTCCGGGHHHHHHHHHHHHHHTTGGGTCCSCSSSCC
T ss_pred HHHHHHHHcCCCC---ChHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhhhhhcccccccccCCCCCC
Confidence 999997 688742 45667788899999999999999999999999999999999998540 2334699999
Q ss_pred CHHHHHHHHHHHhh
Q psy2427 645 SEEDLANLFENSMS 658 (660)
Q Consensus 645 t~e~i~~il~~a~~ 658 (660)
|+||+++||+++|+
T Consensus 394 t~e~i~~i~~~~~~ 407 (407)
T 1vlj_A 394 EREDVREILKLAAK 407 (407)
T ss_dssp CHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHhC
Confidence 99999999999874
No 7
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=100.00 E-value=8.4e-66 Score=550.32 Aligned_cols=346 Identities=23% Similarity=0.330 Sum_probs=310.2
Q ss_pred CceeEEeccceEEECcChH-HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHH
Q psy2427 20 KEYAFEMASSTIRIGPGVT-REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLE 98 (660)
Q Consensus 20 ~~~~~~~~~~~i~~G~g~~-~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~ 98 (660)
+.|.|...|++|+||.|++ ++++++++++|.+|++||||++... ..+++.+.|+ .+.+|++++++|+.+.|++
T Consensus 6 m~F~~~~~P~~i~~G~g~~~~~l~~~l~~~g~~rvliVtd~~~~~--~~~~v~~~L~----~~~~f~~v~~~p~~~~v~~ 79 (364)
T 3iv7_A 6 LAFNHDTLPQKVMFGYGKSSAFLKQEVERRGSAKVMVIAGEREMS--IAHKVASEIE----VAIWHDEVVMHVPIEVAER 79 (364)
T ss_dssp CEEEEEECCEEEEEETTCHHHHHHHHHHHHTCSSEEEECCGGGHH--HHHHHTTTSC----CSEEECCCCTTCBHHHHHH
T ss_pred ceeEEecCCceEEEeCChHHHHHHHHHHHcCCCEEEEEECCCHHH--HHHHHHHHcC----CCEEEcceecCCCHHHHHH
Confidence 3478875679999999987 6799999999989999999998653 4577877775 3568999999999999999
Q ss_pred HHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEe
Q psy2427 99 ATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFD 178 (660)
Q Consensus 99 ~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~ 178 (660)
+++.++++++|+||||||||++|+||++|.... +|+|+||||+ ||||+|++++++
T Consensus 80 ~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~~~------------------------~P~i~IPTTa-tgSe~t~~avi~ 134 (364)
T 3iv7_A 80 ARAVATDNEIDLLVCVGGGSTIGLAKAIAMTTA------------------------LPIVAIPTTY-AGSEATNVWGLT 134 (364)
T ss_dssp HHHHHHHTTCCEEEEEESHHHHHHHHHHHHHHC------------------------CCEEEEECSS-SCGGGCCEEEEE
T ss_pred HHHHHHhcCCCEEEEeCCcHHHHHHHHHHhccC------------------------CCEEEEcCCc-ccccccCeeEec
Confidence 999999999999999999999999999998643 8999999999 999999999997
Q ss_pred eCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q psy2427 179 YEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDV 258 (660)
Q Consensus 179 ~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 258 (660)
+ .+.|..+.++..+|+++|+||+++.++|++++++|++|+|+|++|+|++. .
T Consensus 135 ~--~~~K~~~~~~~~~P~~vi~Dp~l~~tlP~~~~aag~~Dal~ha~Eay~s~-------------------~------- 186 (364)
T 3iv7_A 135 E--AARKTTGVDLKVLPETVIYDSELTMSLPVEMSVASGLNGLAHCIDSLWGP-------------------N------- 186 (364)
T ss_dssp E--TTEEEEEECGGGSCSEEEECGGGGTTSCHHHHHHHHHHHHHHHHHHTTCT-------------------T-------
T ss_pred C--CCeeEeccCCCcCceEEEEChHHHcCCCHHHHHHhHHHHHHHHHHHHhcC-------------------C-------
Confidence 5 36799999999999999999999999999999999999999999999872 2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHH
Q psy2427 259 WARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSV 338 (660)
Q Consensus 259 la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~av 338 (660)
T Consensus 187 -------------------------------------------------------------------------------- 186 (364)
T 3iv7_A 187 -------------------------------------------------------------------------------- 186 (364)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccccc
Q psy2427 339 VMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDP 418 (660)
Q Consensus 339 ai~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~ 418 (660)
T Consensus 187 -------------------------------------------------------------------------------- 186 (364)
T 3iv7_A 187 -------------------------------------------------------------------------------- 186 (364)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q psy2427 419 LHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLE 498 (660)
Q Consensus 419 ~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ 498 (660)
.+|++|.+|+++++++.++++++++|+.|++
T Consensus 187 -------------------------------------------------~~~~td~~a~~ai~~i~~~l~~a~~~~~d~~ 217 (364)
T 3iv7_A 187 -------------------------------------------------ADPINAVLAAEGIRALNQGLPKIVANPHSIE 217 (364)
T ss_dssp -------------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred -------------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Confidence 2355666677777777777777777888999
Q ss_pred HHHHHHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHH
Q psy2427 499 ARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAE 578 (660)
Q Consensus 499 ar~~~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~ 578 (660)
+|++|+||+++||++|+++|+|++|+|+|+||+.| +++||+++++++|+||+||.+.+++||+++++
T Consensus 218 aR~~m~~As~laG~a~~~~g~g~~Hai~h~lg~~~-------------~i~HG~~~aillp~v~~~~~~~~~~~~~~~a~ 284 (364)
T 3iv7_A 218 GRDEALYGAYLAAVSFASAGSGLHHKICHTLGGTF-------------NLPHAQTHATVLPYVLAFNAGDAPEAERRAAA 284 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHTS-------------CCCHHHHHHHHHHHHHHHHGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHhhccCchHHHHHHhHhhhcc-------------CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999999999999974 79999999999999999999999999999999
Q ss_pred HhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHHHHhh
Q psy2427 579 LLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSMS 658 (660)
Q Consensus 579 ~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~a~~ 658 (660)
+||.+. .++.+++|++++|+|++|+|+|+++++++++++.++ . .+..+||+++|+||+++||+++|.
T Consensus 285 ~lg~~~-----------~~~~i~~l~~~lglP~~L~e~Gi~~~~i~~~a~~a~-~-~~~~~np~~~t~~di~~il~~a~~ 351 (364)
T 3iv7_A 285 AFGTDT-----------ALEGLQRLRLSVNAPKRLSDYGFEASGIAEAVDVTL-E-KVPANNPRPVTRENLSRLLEAALN 351 (364)
T ss_dssp HHTSSS-----------HHHHHHHHHHHTTCCCCGGGGTCCGGGHHHHHHHHH-T-TSCTTCSSCCCHHHHHHHHHHHHH
T ss_pred HhCCch-----------HHHHHHHHHHHcCCCCcHHHcCCCHHHHHHHHHHHH-h-hcccCCCCCCCHHHHHHHHHHHhc
Confidence 998741 268899999999999999999999999999999998 3 456789999999999999999997
Q ss_pred c
Q psy2427 659 V 659 (660)
Q Consensus 659 ~ 659 (660)
+
T Consensus 352 g 352 (364)
T 3iv7_A 352 G 352 (364)
T ss_dssp T
T ss_pred C
Confidence 6
No 8
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=100.00 E-value=6.5e-64 Score=546.57 Aligned_cols=381 Identities=20% Similarity=0.285 Sum_probs=335.0
Q ss_pred CCceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECcc-ccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHH
Q psy2427 19 DKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPH-LSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFL 97 (660)
Q Consensus 19 ~~~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~-~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~ 97 (660)
|+.+.|..| ++|+||.|++++++++++ +| +|++||||+. +...++.+++.+.|+ |+++.+|++++++|+.+.|+
T Consensus 22 m~~~~~~~p-~~i~~G~g~l~~l~~~l~-~g-~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~~f~~v~~~p~~~~v~ 96 (408)
T 1oj7_A 22 LNNFNLHTP-TRILFGKGAIAGLREQIP-HD-ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPAYETLM 96 (408)
T ss_dssp CCCEEEEEE-EEEEESTTGGGGHHHHSC-TT-CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEEEECCCCSSCBHHHHH
T ss_pred hhceeecCC-CeEEECCCHHHHHHHHHh-cC-CEEEEEECCchhhhccHHHHHHHHhC--CCEEEEeCCcCCCcCHHHHH
Confidence 556778775 899999999999999998 88 9999999987 555567899999997 88999999999999999999
Q ss_pred HHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCC-cchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceE
Q psy2427 98 EATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPE-AEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSI 176 (660)
Q Consensus 98 ~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~-~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~av 176 (660)
++++.++++++|+||||||||++|+||++|..+.+++ .++|||+... .....+.+|+|+||||+|||||+|+++|
T Consensus 97 ~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~~~d~~~~~----~~~~~~~~p~i~IPTTagtgSevt~~av 172 (408)
T 1oj7_A 97 NAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTG----GKEIKSAIPMGCVLTLPATGSESNAGAV 172 (408)
T ss_dssp HHHHHHHHHTCCEEEEEESHHHHHHHHHHHHHTTSCTTSCTTHHHHTT----TTTCCCCCCEEEEESSCSSCGGGSSEEE
T ss_pred HHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhCCCCCCHHHHhccc----cCcCCCCCCEEEEeCCCchhHHhCCCEE
Confidence 9999999999999999999999999999999987642 1788887521 1223356999999999999999999999
Q ss_pred EeeCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHH
Q psy2427 177 FDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVS 256 (660)
Q Consensus 177 i~~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s 256 (660)
+++++++.|.++.++.++|+++|+||+++.++|++++++|++|+|+|++|+|++. .
T Consensus 173 i~~~~~~~K~~~~~~~~~P~~~i~Dp~l~~tlP~~~~aag~~Dal~haiEa~~s~------------------~------ 228 (408)
T 1oj7_A 173 ISRKTTGDKQAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTK------------------P------ 228 (408)
T ss_dssp EEETTTTEEEEEECGGGSCSEEEECGGGGTTCCHHHHHHHHHHHHHHHHHHHSSS------------------C------
T ss_pred EEECCCCeEEEeeCCCcCccEEEECchhhcCCCHHHHHhHHHHHHHHHHHHHhcC------------------C------
Confidence 9998888999999888999999999999999999999999999999999999862 0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchh
Q psy2427 257 DVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGL 336 (660)
Q Consensus 257 ~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~ 336 (660)
T Consensus 229 -------------------------------------------------------------------------------- 228 (408)
T 1oj7_A 229 -------------------------------------------------------------------------------- 228 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccc
Q psy2427 337 SVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLI 416 (660)
Q Consensus 337 avai~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~ 416 (660)
T Consensus 229 -------------------------------------------------------------------------------- 228 (408)
T 1oj7_A 229 -------------------------------------------------------------------------------- 228 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy2427 417 DPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDD 496 (660)
Q Consensus 417 d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~ 496 (660)
..+|+++.+|+++++++.++++++++|+.|
T Consensus 229 --------------------------------------------------~~~~~~d~~a~~ai~~i~~~l~~av~d~~d 258 (408)
T 1oj7_A 229 --------------------------------------------------VDAKIHDRFAEGILLTLIEDGPKALKEPEN 258 (408)
T ss_dssp --------------------------------------------------BCCHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred --------------------------------------------------CCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 123455666667777777777777788889
Q ss_pred HHHHHHHHHHHHHHhHhhhcccc---hhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHH
Q psy2427 497 LEARSHMHLASAMAGVGFGNAGV---HLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERH 573 (660)
Q Consensus 497 ~~ar~~~~~as~~ag~~~~~~g~---~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~ 573 (660)
.++|++|++|+++||+++.|.|. +++|+|+|.|++.| +++||+++++++|+|++||.+.+++|+
T Consensus 259 ~~ar~~~~~as~lag~a~~~~G~~~~~~~Hai~h~l~~~~-------------~i~HG~avai~lp~v~~~~~~~~~~~~ 325 (408)
T 1oj7_A 259 YDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAMH-------------GLDHAQTLAIVLPALWNEKRDTKRAKL 325 (408)
T ss_dssp HHHHHHHHHHHHHHSSSTTTTTSCCCCHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHHHTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhhHHHhcc-------------CCChHHhHHHHHHHHHHHHhhhCHHHH
Confidence 99999999999999999999887 79999999999864 699999999999999999999999999
Q ss_pred HHHHH-HhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHH
Q psy2427 574 IEAAE-LLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANL 652 (660)
Q Consensus 574 ~~ia~-~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~i 652 (660)
+++++ ++|.... ++++.+...++++++|++++|+|++|+|+|+++++++++++.++.+.+...+||+++|+||+++|
T Consensus 326 ~~la~~~~g~~~~--~~~~~~~~~~~~i~~l~~~lglP~~l~~lgi~~~~i~~~a~~a~~~~~~~~~~p~~~t~~~i~~i 403 (408)
T 1oj7_A 326 LQYAERVWNITEG--SDDERIDAAIAATRNFFEQLGVPTHLSDYGLDGSSIPALLKKLEEHGMTQLGENHDITLDVSRRI 403 (408)
T ss_dssp HHHHHHHHCCCCS--CHHHHHHHHHHHHHHHHHHHTCCCSGGGGTCCSTTHHHHHHHHHHTTCSSBTTTTCBCHHHHHHH
T ss_pred HHHHHHhcCCCCC--ChHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhccccccCCCCCCCHHHHHHH
Confidence 99998 4787542 45667778899999999999999999999999999999999998765544679999999999999
Q ss_pred HHHHh
Q psy2427 653 FENSM 657 (660)
Q Consensus 653 l~~a~ 657 (660)
|+++|
T Consensus 404 l~~~~ 408 (408)
T 1oj7_A 404 YEAAR 408 (408)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 99875
No 9
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=100.00 E-value=3.1e-60 Score=511.00 Aligned_cols=356 Identities=25% Similarity=0.416 Sum_probs=311.7
Q ss_pred eeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccc-cccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHH
Q psy2427 22 YAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHL-SKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEAT 100 (660)
Q Consensus 22 ~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~-~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~ 100 (660)
+.|.. |++|+||.|++++++++++++| +|++||||++. ...++.+++.+.|++.|+++.+|++++++|+.+.|++++
T Consensus 14 ~~~~~-p~~i~~G~g~~~~l~~~l~~~g-~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~ 91 (371)
T 1o2d_A 14 WEFYM-PTDVFFGEKILEKRGNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAV 91 (371)
T ss_dssp CCCCC-CCEEEESTTHHHHHGGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHH
T ss_pred EEecC-CceEEECcCHHHHHHHHHHHcC-CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHH
Confidence 34444 5899999999999999999998 99999999954 445678999999999999999999999999999999999
Q ss_pred HHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeC
Q psy2427 101 KFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYE 180 (660)
Q Consensus 101 ~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~ 180 (660)
+.+++.++|+||||||||++|+||++|..+.+++.++|||... .+. .+.+|+|+||||+|||||+|++++++ +
T Consensus 92 ~~~~~~~~d~IIavGGGsv~D~AK~iA~~~~~~~~~~~~~~~~-----~~~-~~~~p~i~IPTTagtgse~t~~avi~-~ 164 (371)
T 1o2d_A 92 ERYRNDSFDFVVGLGGGSPMDFAKAVAVLLKEKDLSVEDLYDR-----EKV-KHWLPVVEIPTTAGTGSEVTPYSILT-D 164 (371)
T ss_dssp HHHTTSCCSEEEEEESHHHHHHHHHHHHHTTSTTCCSGGGGCG-----GGC-CCCCCEEEEECSSCCCGGGCCEEEEE-C
T ss_pred HHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCHHHHhcc-----cCC-CCCCeEEEEeCCCchhhhhcCceEEE-c
Confidence 9999999999999999999999999999998877889998742 112 25699999999999999999999999 5
Q ss_pred CCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q psy2427 181 PLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260 (660)
Q Consensus 181 ~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la 260 (660)
+.+.|.++. ..+|+++|+||+++.++|++++++|++|+|+|++|+|++. ..+++++.++
T Consensus 165 ~~g~K~~i~--~~~P~~vi~Dp~l~~tlP~~~~aag~~Dal~ha~E~~~s~-------------------~~~~~~d~~a 223 (371)
T 1o2d_A 165 PEGNKRGCT--LMFPVYAFLDPRYTYSMSDELTLSTGVDALSHAVEGYLSR-------------------KSTPPSDALA 223 (371)
T ss_dssp TTSCEEEEE--CCCCSEEEECGGGGGGCCHHHHHHHHHHHHHHHHHHHHST-------------------TCCHHHHHHH
T ss_pred CCCeeEeee--cccCCEEEECchhhcCCCHHHHHHHHHHHHHHHHHHHhcC-------------------CCCHHHHHHH
Confidence 778899998 7889999999999999999999999999999999999872 3455555555
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHh
Q psy2427 261 RFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVM 340 (660)
Q Consensus 261 ~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai 340 (660)
+++++++.+++
T Consensus 224 ~~a~~li~~~l--------------------------------------------------------------------- 234 (371)
T 1o2d_A 224 IEAMKIIHRNL--------------------------------------------------------------------- 234 (371)
T ss_dssp HHHHHHHHHHH---------------------------------------------------------------------
T ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Confidence 55555554444
Q ss_pred hHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccccccc
Q psy2427 341 SAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLH 420 (660)
Q Consensus 341 ~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~ 420 (660)
T Consensus 235 -------------------------------------------------------------------------------- 234 (371)
T 1o2d_A 235 -------------------------------------------------------------------------------- 234 (371)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q psy2427 421 TLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEAR 500 (660)
Q Consensus 421 ~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar 500 (660)
+.+++ .|.++|
T Consensus 235 -------------------------------------------------------------------~~~v~--~d~~aR 245 (371)
T 1o2d_A 235 -------------------------------------------------------------------PKAIE--GNREAR 245 (371)
T ss_dssp -------------------------------------------------------------------HHHHT--TCHHHH
T ss_pred -------------------------------------------------------------------HHHHH--cCHHHH
Confidence 44433 467789
Q ss_pred HHHHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHh
Q psy2427 501 SHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELL 580 (660)
Q Consensus 501 ~~~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~l 580 (660)
++|++|+++||++|.|.|.+++|+|+|.|++++ +++||+++|+++|++++|+.+..++++++++++|
T Consensus 246 ~~~~~as~laG~a~~n~G~~~~Hai~h~l~~~~-------------~i~HG~a~ai~l~~~~~~~~~~~~~~~~~~a~~l 312 (371)
T 1o2d_A 246 KKMFVASCLAGMVIAQTGTTLAHALGYPLTTEK-------------GIKHGKATGMVLPFVMEVMKEEIPEKVDTVNHIF 312 (371)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhCC-------------CCChHHHHHHHHHHHHHHhhhhcHHHHHHHHHHH
Confidence 999999999999999999999999999999864 6999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHHHHhh
Q psy2427 581 GADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSMS 658 (660)
Q Consensus 581 g~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~a~~ 658 (660)
| +++.++++++|+|++ +|+++++++++++.++.+ ....+||+++|+||+++||+++|+
T Consensus 313 ~----------------~~l~~~l~~lglp~~---~gi~~~~~~~la~~a~~d-~~~~~~p~~~~~~~i~~il~~~~~ 370 (371)
T 1o2d_A 313 G----------------GSLLKFLKELGLYEK---VAVSSEELEKWVEKGSRA-KHLKNTPGTFTPEKIRNIYREALG 370 (371)
T ss_dssp T----------------TCHHHHHHHTTCCCC---CCCCHHHHHHHHHHHTTC-GGGGGSSSCCCHHHHHHHHHHHHC
T ss_pred H----------------HHHHHHHHHcCCCcC---CCCCHHHHHHHHHHHHhc-ccccCCCCCCCHHHHHHHHHHHhh
Confidence 7 247788899999965 799999999999999855 345789999999999999999986
No 10
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=100.00 E-value=2.3e-59 Score=501.64 Aligned_cols=342 Identities=20% Similarity=0.273 Sum_probs=290.2
Q ss_pred CCceeEEeccceEEECcChHHHHHHHHHhcC---CCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHH
Q psy2427 19 DKEYAFEMASSTIRIGPGVTREVGMDMVNMK---AQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDS 95 (660)
Q Consensus 19 ~~~~~~~~~~~~i~~G~g~~~~l~~~l~~~g---~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~ 95 (660)
|....|..| ++|+||.|++++++++++++| .+|++||||+++.+. .+.+.|++.|+++.+|++++++|+.+.
T Consensus 20 ~~~~~f~~p-~~i~~G~g~l~~l~~~l~~~g~~~~~~~liVtd~~~~~~----~l~~~L~~~g~~~~~f~~v~~~pt~~~ 94 (375)
T 3rf7_A 20 MSFKNFKCV-PKMIFGRGSFVQLDTVLEQERTDANDFVVFLVDDVHQHK----PLAARVPNKAHDLVIYVNVDDEPTTVQ 94 (375)
T ss_dssp TTSCCCCCC-SCEEESTTGGGGHHHHHHTTCCSTTCCEEEEEEGGGTTS----HHHHHSCCCTTSEEEEECCSSCCBHHH
T ss_pred cchhhhcCC-CeEEEcCCHHHHHHHHHHHhcccCCCeEEEEECchhhhh----HHHHHHHhcCCeEEEEeCCCCCCCHHH
Confidence 344556665 899999999999999999976 378999999987655 366778778999999999999999999
Q ss_pred HHHHHHHhHhcC---CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCcccc
Q psy2427 96 FLEATKFVRSVQ---CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETT 172 (660)
Q Consensus 96 v~~~~~~~~~~~---~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s 172 (660)
|+++++.+++.+ +|+||||||||++|+||++|..+.++ ++++||... .....+.+|+|+||||+|||||+|
T Consensus 95 v~~~~~~~~~~~~~~~D~IIavGGGS~iD~AK~iA~~~~~~-~~~~~~~~~-----~~~~~~~~P~i~IPTTagtgSevt 168 (375)
T 3rf7_A 95 VDELTAQVKAFNTKLPVSVVGLGGGSTMDLAKAVSLMLTNP-GSSSEYQGW-----DLIKNPAVHHIGIPTVSGTGAEAS 168 (375)
T ss_dssp HHHHHHHHHHHCSSCCSEEEEEESHHHHHHHHHHHHHTSSC-SCGGGGCEE-----SCCCSCCCCEEEEESSCSSCTTTC
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCC-CCHHHhhcc-----ccccCCCCCEEEEcCCCccchhhC
Confidence 999999999998 99999999999999999999999775 578888642 223455699999999999999999
Q ss_pred CceEEeeCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCC
Q psy2427 173 GVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQ 252 (660)
Q Consensus 173 ~~avi~~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~ 252 (660)
+++|++++++ |.++.++..+|+++|+||+++.++|++++++|++|+|+|++|+|++ ...
T Consensus 169 ~~avit~~~~--K~~i~~~~~~P~~vi~Dp~l~~tlP~~~~aa~g~Dal~HaiEay~s-------------------~~~ 227 (375)
T 3rf7_A 169 RTAVLCGPVR--KLGLNSDYTVFDQIIMDSELIAGVPTDQWFYTGMDCFIHCVESLQG-------------------TYL 227 (375)
T ss_dssp SCCEEECSSC--EEEEESGGGSCSEEEECGGGGTTCCHHHHHHHHHHHHHHHHHHHHS-------------------TTC
T ss_pred CeEEEEeCCC--eEEecccccCCCEEEEcHHHHcCCCHHHHHHHHHHHHHHHHHHHhc-------------------cCC
Confidence 9999998653 8999999999999999999999999999999999999999999988 356
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCc
Q psy2427 253 NPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPII 332 (660)
Q Consensus 253 ~~~s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~ 332 (660)
+|++|.+++++++++.+++
T Consensus 228 ~~~sd~~a~~ai~li~~~l------------------------------------------------------------- 246 (375)
T 3rf7_A 228 NEFAKAFAEKSMDLCREVY------------------------------------------------------------- 246 (375)
T ss_dssp CHHHHHHHHHHHHHHHHHH-------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHH-------------------------------------------------------------
Confidence 7777777777776654432
Q ss_pred CchhHHHhhHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcc
Q psy2427 333 PHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPT 412 (660)
Q Consensus 333 ~HG~avai~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~ 412 (660)
T Consensus 247 -------------------------------------------------------------------------------- 246 (375)
T 3rf7_A 247 -------------------------------------------------------------------------------- 246 (375)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhc
Q psy2427 413 LGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVY 492 (660)
Q Consensus 413 ~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~ 492 (660)
+ +
T Consensus 247 ---------------------------------------------------------------------------~---~ 248 (375)
T 3rf7_A 247 ---------------------------------------------------------------------------L---D 248 (375)
T ss_dssp ---------------------------------------------------------------------------T---S
T ss_pred ---------------------------------------------------------------------------h---h
Confidence 1 1
Q ss_pred CCCCHHHHHHHHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHH
Q psy2427 493 NQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPER 572 (660)
Q Consensus 493 ~~~~~~ar~~~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~ 572 (660)
+ |.++|++|+||+++||++|+++|+|++|+|+|+||++| +++||+++++++|++++|+.+ .++
T Consensus 249 ~--~~~ar~~m~~as~laG~a~~~~g~g~~Hai~h~L~~~~-------------~i~HG~~~aillp~v~~~~~~-~~~- 311 (375)
T 3rf7_A 249 D--HPEKDDKLMMASYMGGMSIAYSQVGACHAVSYGLGYVL-------------GYHHGIGNCLAFDVLEEFYPE-GVA- 311 (375)
T ss_dssp C--CTTHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH-------------CCCHHHHHHHHHTTCTTTSHH-HHH-
T ss_pred c--CHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHHHhcc-------------CCCchhhHHHHHHHHHHhCHH-HHH-
Confidence 1 45689999999999999999999999999999999975 799999999999999988532 122
Q ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHH--HcCCCCcccccCCCCCcHHHHHHhhccCCC-----CCCCCCccCC
Q psy2427 573 HIEAAELLGADVSRVKKADAGKLLADTVRGYMD--QMKIENGLKVLGYTSADIPALVTGTLPQHR-----ITKLAPREQS 645 (660)
Q Consensus 573 ~~~ia~~lg~~~~~~~~~~~~~~~~~~l~~l~~--~lglp~~L~elGi~~~~i~~ia~~a~~~~~-----~~~~~P~~~t 645 (660)
++.+|.+ ++|+|++|++ |+++++++++|+.|+.+.+ ...||||++|
T Consensus 312 --------------------------~~~~~~~~~~lglP~~L~~-gi~~e~l~~~a~~A~~~~~l~~~~~~~n~Pr~~t 364 (375)
T 3rf7_A 312 --------------------------EFRKMMEIHNITLPKNICK-DLPDETIAKMVAVTKSMGPLWDNVYGKGWEEKVT 364 (375)
T ss_dssp --------------------------HHHHHHHHTTCCCCCCSST-TCCHHHHHHHHHHHHTCHHHHHHHHCTTCTTTSC
T ss_pred --------------------------HHHHHHHhcCCCCCCchhh-CCCHHHHHHHHHHHHhhhhccccCCCCCCCCCCC
Confidence 3333333 7999999998 9999999999999986533 2345699999
Q ss_pred HHHHHHHHHH
Q psy2427 646 EEDLANLFEN 655 (660)
Q Consensus 646 ~e~i~~il~~ 655 (660)
+||+++||++
T Consensus 365 ~edi~~i~~~ 374 (375)
T 3rf7_A 365 DEMLTKLFRR 374 (375)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999999986
No 11
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=100.00 E-value=9e-59 Score=499.90 Aligned_cols=353 Identities=15% Similarity=0.127 Sum_probs=293.8
Q ss_pred CCCCceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHH
Q psy2427 17 TPDKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSF 96 (660)
Q Consensus 17 ~~~~~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v 96 (660)
..|..+.|..| ++|+||.|++++++++++++| +|++||||+.+.+. +.+++.+.|++ |+++ +|..++++|+.+.|
T Consensus 21 ~~mm~~~f~~p-~~i~~G~g~l~~l~~~l~~~g-~r~liVtd~~~~~~-~~~~v~~~L~~-g~~~-~~~~~~~~p~~~~v 95 (387)
T 3uhj_A 21 QSMMARAFGGP-NKYIQRAGEIDKLAAYLAPLG-KRALVLIDRVLFDA-LSERIGKSCGD-SLDI-RFERFGGECCTSEI 95 (387)
T ss_dssp ---CEEEEECC-SEEEECTTTTTTTHHHHGGGC-SEEEEEECTTTHHH-HHHHC-------CCEE-EEEECCSSCSHHHH
T ss_pred hhhhhhHhcCC-CeEEEcCCHHHHHHHHHHHcC-CEEEEEECchHHHH-HHHHHHHHHHc-CCCe-EEEEcCCCCCHHHH
Confidence 34566778875 899999999999999999999 99999999998876 77999999999 9998 88999999999999
Q ss_pred HHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceE
Q psy2427 97 LEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSI 176 (660)
Q Consensus 97 ~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~av 176 (660)
+++++.+++.++|+||||||||++|+||++|.... +|+|+||||+|||||+|++++
T Consensus 96 ~~~~~~~~~~~~d~IIavGGGs~~D~AK~iA~~~~------------------------~p~i~IPTTagtgSevt~~av 151 (387)
T 3uhj_A 96 ERVRKVAIEHGSDILVGVGGGKTADTAKIVAIDTG------------------------ARIVIAPTIASTDAPCSAIAV 151 (387)
T ss_dssp HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHTT------------------------CEEEECCSSCCCSTTTSSEEE
T ss_pred HHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHhcC------------------------CCEEEecCcccCCcccCCeEE
Confidence 99999999999999999999999999999996543 899999999999999999999
Q ss_pred EeeCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHH
Q psy2427 177 FDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVS 256 (660)
Q Consensus 177 i~~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s 256 (660)
+++++++.|.++.++ .+|+++|+||+++.++|++++++|++|+|+|++|+|++.. .
T Consensus 152 i~~~~~~~k~~~~~~-~~P~~vi~Dp~l~~tlP~~~~aag~~Dal~ha~Eay~s~~-------------------a---- 207 (387)
T 3uhj_A 152 RYTEHGVYEEALRLP-RNPDAVVVDSALVAAAPARFLVAGIGDALSTWFEARSNIE-------------------S---- 207 (387)
T ss_dssp EECTTSCEEEEEECS-CCCSEEEECHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHH-------------------H----
T ss_pred EEcCCCceEeeeecC-CCCeEEEEChHHHhhCCHHHHHHHHHHHHHHHHHHHHHHh-------------------c----
Confidence 998877788888766 4899999999999999999999999999999999998720 0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchh
Q psy2427 257 DVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGL 336 (660)
Q Consensus 257 ~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~ 336 (660)
++. +.. .
T Consensus 208 --------------------~~~----------------------------------~~~----~--------------- 214 (387)
T 3uhj_A 208 --------------------RTD----------------------------------NYV----A--------------- 214 (387)
T ss_dssp --------------------TCC----------------------------------CSS----T---------------
T ss_pred --------------------CCc----------------------------------ccc----c---------------
Confidence 000 000 0
Q ss_pred HHHhhHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccc
Q psy2427 337 SVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLI 416 (660)
Q Consensus 337 avai~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~ 416 (660)
.+
T Consensus 215 -------------------------------------------------------------~~----------------- 216 (387)
T 3uhj_A 215 -------------------------------------------------------------GG----------------- 216 (387)
T ss_dssp -------------------------------------------------------------TC-----------------
T ss_pred -------------------------------------------------------------cc-----------------
Confidence 00
Q ss_pred ccccccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHH---HhcC
Q psy2427 417 DPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKR---AVYN 493 (660)
Q Consensus 417 d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~---~~~~ 493 (660)
| ........+|+.+++.|.+++++ +++|
T Consensus 217 ------------------------------------------------~-~~~~~a~~~a~~~~~~l~~~l~~a~~a~~~ 247 (387)
T 3uhj_A 217 ------------------------------------------------F-PATEAGMAIARHCQDVLTRDAVKAKIAVEA 247 (387)
T ss_dssp ------------------------------------------------C-CBCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ------------------------------------------------c-chhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 01224567899999999999995 6899
Q ss_pred CCCHHHHHHHHHHH-HHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHH
Q psy2427 494 QDDLEARSHMHLAS-AMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPER 572 (660)
Q Consensus 494 ~~~~~ar~~~~~as-~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~ 572 (660)
+.|.++|++|++|+ ++||++|+|+|++++|+|+|+|+++.. .+++|||++++
T Consensus 248 ~~~~~Ar~~m~~as~~laG~af~~ag~g~~Hai~h~L~~~~~----------~~~i~HG~~~a----------------- 300 (387)
T 3uhj_A 248 GLLTPAVENIIEANTLLSGLGFENCGCSAAHGIHDGLTVLEE----------VHGYFHGEKVA----------------- 300 (387)
T ss_dssp TCCCHHHHHHHHHHTHHHHHHHHHHCCCHHHHHHHHHTTSGG----------GTTSCHHHHHH-----------------
T ss_pred CCcHHHHHHHHHHHHHHhhhhhhccCcHHHHHhhhhhhcccC----------cCCCCchHHHH-----------------
Confidence 99999999999998 999999999999999999999998621 12799999887
Q ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCC---CCcHHHHHHhhccCCCCCCCCCccCCHHHH
Q psy2427 573 HIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYT---SADIPALVTGTLPQHRITKLAPREQSEEDL 649 (660)
Q Consensus 573 ~~~ia~~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~---~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i 649 (660)
|..+++.++.. .+..+++++++|++++|+|++|+|+|++ +++++++++.|+.+.+...+||+++|+||+
T Consensus 301 ~~~la~~~~~~--------~~~~~i~~i~~l~~~lglP~~L~elGi~~~~~~~l~~ia~~a~~~~~~~~n~P~~~t~e~i 372 (387)
T 3uhj_A 301 FGTLCLLMLEN--------RDRAEIEAMIRFCRSVGLPTKLADLGIVDDVPAKIGRVAEAACRPGNIIYATPVTITVPAV 372 (387)
T ss_dssp HHHHHHHHHTT--------CCHHHHHHHHHHHHHHTCCCSGGGGTCCSSHHHHHHHHHHHHTSTTCGGGGSSSCCCHHHH
T ss_pred HHHHHHHHhCC--------CcHHHHHHHHHHHHHcCCCCCHHHcCCCCCcHHHHHHHHHHHHcccchhhcCCCCCCHHHH
Confidence 34555554321 1123589999999999999999999999 789999999999766667789999999999
Q ss_pred HHHHHHHh
Q psy2427 650 ANLFENSM 657 (660)
Q Consensus 650 ~~il~~a~ 657 (660)
++||+++-
T Consensus 373 ~~il~~a~ 380 (387)
T 3uhj_A 373 RDAILALD 380 (387)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998763
No 12
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=100.00 E-value=1.7e-53 Score=459.74 Aligned_cols=348 Identities=17% Similarity=0.205 Sum_probs=288.8
Q ss_pred CceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHH
Q psy2427 20 KEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEA 99 (660)
Q Consensus 20 ~~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~ 99 (660)
..|.|..| ++|+||.|++++++++++++| +|++||||+++.+....+++.+.|++.|+.+.+|++ +|+.++++++
T Consensus 13 ~~f~~~~p-~~i~~G~g~l~~l~~~l~~~g-~~~liVtd~~~~~~~~~~~v~~~L~~~g~~~~~~~g---e~~~~~v~~~ 87 (376)
T 1kq3_A 13 MITTTIFP-GRYVQGAGAINILEEELSRFG-ERAFVVIDDFVDKNVLGENFFSSFTKVRVNKQIFGG---ECSDEEIERL 87 (376)
T ss_dssp CCBCCCCC-SEEEEETTGGGGHHHHHHTTC-SEEEEEECHHHHHHTTCTTGGGGCSSSEEEEEECCS---SCBHHHHHHH
T ss_pred cCcccCCC-ceEEECCCHHHHHHHHHHHcC-CeEEEEECccHHhhccHHHHHHHHHHcCCeEEEeCC---CCCHHHHHHH
Confidence 34566664 899999999999999999998 999999999987765468999999888866666654 8899999999
Q ss_pred HHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEee
Q psy2427 100 TKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDY 179 (660)
Q Consensus 100 ~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~ 179 (660)
.+.+++ ++|+||||||||++|+||++|.... +|+|+||||+|||||+|+++++++
T Consensus 88 ~~~~~~-~~d~IIavGGGsv~D~aK~iA~~~~------------------------~p~i~IPTTa~tgSevt~~avi~~ 142 (376)
T 1kq3_A 88 SGLVEE-ETDVVVGIGGGKTLDTAKAVAYKLK------------------------KPVVIVPTIASTDAPCSALSVIYT 142 (376)
T ss_dssp HTTCCT-TCCEEEEEESHHHHHHHHHHHHHTT------------------------CCEEEEESSCCCSCTTSSEEEEEC
T ss_pred HHHHhc-CCCEEEEeCCcHHHHHHHHHHHhcC------------------------CCEEEecCccccCcccCCeEEEEe
Confidence 999999 9999999999999999999995432 899999999999999999999998
Q ss_pred CCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q psy2427 180 EPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVW 259 (660)
Q Consensus 180 ~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~l 259 (660)
++++.|.+..++ .+|++||+||+++.++|++++++|++|+|+|++|+|++..
T Consensus 143 ~~~~~k~~~~~~-~~P~~viiDp~l~~tlP~~~~aag~~Dal~h~~E~~~s~~--------------------------- 194 (376)
T 1kq3_A 143 PNGEFKRYLFLP-RNPDVVLVDTEIVAKAPARFLVAGMGDALATWFEAESCKQ--------------------------- 194 (376)
T ss_dssp TTSCEEEEEECS-SCCSEEEEEHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH---------------------------
T ss_pred CCCCeEeeccCC-CCCcEEEEchHHHhhCCHHHHHHHHHHHHHHHHHHHHhhh---------------------------
Confidence 877778777765 7899999999999999999999999999999999998720
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHH
Q psy2427 260 ARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 339 (660)
Q Consensus 260 a~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~ava 339 (660)
.++ .+ ...
T Consensus 195 ----------------~~~----------------------------------~~-~~~--------------------- 202 (376)
T 1kq3_A 195 ----------------KYA----------------------------------PN-MTG--------------------- 202 (376)
T ss_dssp ----------------HTC----------------------------------BC-TTS---------------------
T ss_pred ----------------cCC----------------------------------cc-ccc---------------------
Confidence 000 00 000
Q ss_pred hhHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccc
Q psy2427 340 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPL 419 (660)
Q Consensus 340 i~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~ 419 (660)
T Consensus 203 -------------------------------------------------------------------------------- 202 (376)
T 1kq3_A 203 -------------------------------------------------------------------------------- 202 (376)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHH---hcCCCC
Q psy2427 420 HTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRA---VYNQDD 496 (660)
Q Consensus 420 ~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~---~~~~~~ 496 (660)
...+.+++.+++.+++.+.++++++ ++++.+
T Consensus 203 ----------------------------------------------~~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~ 236 (376)
T 1kq3_A 203 ----------------------------------------------RLGSMTAYALARLCYETLLEYGVLAKRSVEEKSV 236 (376)
T ss_dssp ----------------------------------------------SBCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ----------------------------------------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 0123456788999999999999984 578899
Q ss_pred HHHHHHHHHHHH-HHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHH
Q psy2427 497 LEARSHMHLASA-MAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIE 575 (660)
Q Consensus 497 ~~ar~~~~~as~-~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ 575 (660)
.++|++|++|+. ++|++|.|.|.+++|+|+|.|+++.. .++++||+++++ ..
T Consensus 237 ~~ar~~~~~a~~~~aG~a~~n~g~~~~Hai~~~l~~~~~----------~~~i~HG~ava~-----------------g~ 289 (376)
T 1kq3_A 237 TPALEKIVEANTLLSGLGFESGGLAAAHAIHNGLTVLEN----------THKYLHGEKVAI-----------------GV 289 (376)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTSGG----------GTTSCHHHHHHH-----------------HH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHhChhhcccc----------cCCCCcHHHHHH-----------------HH
Confidence 999999999996 89999999999999999999987510 127999999984 22
Q ss_pred HHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCC---CCcHHHHHHhhccCCCCCCCCCccCCHHHHHHH
Q psy2427 576 AAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYT---SADIPALVTGTLPQHRITKLAPREQSEEDLANL 652 (660)
Q Consensus 576 ia~~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~---~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~i 652 (660)
+++.+.. +.+ ...++++++|++++|+|++|+|+|++ +++++++++.++.+.+...+||+++|+||+++|
T Consensus 290 ~~~~~~~---~~~-----~~~~~~i~~l~~~~glP~~l~~lgi~~~~~~~~~~~a~~a~~~~~~~~n~p~~~t~~~i~~i 361 (376)
T 1kq3_A 290 LASLFLT---DKP-----RKMIEEVYSFCEEVGLPTTLAEIGLDGVSDEDLMKVAEKACDKNETIHNEPQPVTSKDVFFA 361 (376)
T ss_dssp HHHHHHT---TCC-----HHHHHHHHHHHHHHTCCCSGGGGTCTTCCHHHHHHHHHHHTCTTSGGGGSSSCCCHHHHHHH
T ss_pred HHHHHhc---cCC-----HHHHHHHHHHHHHcCCCCCHHHcCCCCCCHHHHHHHHHHHhcccchhhcCCCCCCHHHHHHH
Confidence 3332211 111 22478999999999999999999998 789999999998765555667999999999999
Q ss_pred HHHHhh
Q psy2427 653 FENSMS 658 (660)
Q Consensus 653 l~~a~~ 658 (660)
|++++.
T Consensus 362 l~~a~~ 367 (376)
T 1kq3_A 362 LKAADR 367 (376)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999984
No 13
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=100.00 E-value=1.2e-51 Score=444.76 Aligned_cols=348 Identities=16% Similarity=0.152 Sum_probs=289.2
Q ss_pred eeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHH
Q psy2427 22 YAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATK 101 (660)
Q Consensus 22 ~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~ 101 (660)
+.|.+ |++|+||.|++++++++++++| +|++||||+++.+ .+.+++.+.|++.|+++. |..+.++|+.++++++++
T Consensus 5 ~~~~~-p~~i~~G~g~~~~l~~~l~~~g-~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~-~~~~~ge~~~~~v~~~~~ 80 (370)
T 1jq5_A 5 RVFIS-PAKYVQGKNVITKIANYLEGIG-NKTVVIADEIVWK-IAGHTIVNELKKGNIAAE-EVVFSGEASRNEVERIAN 80 (370)
T ss_dssp BCCCC-CSEEEEETTGGGGHHHHHTTTC-SEEEEEECHHHHH-HTHHHHHHHHHTTTCEEE-EEECCSSCBHHHHHHHHH
T ss_pred eEecC-CCeEEECcCHHHHHHHHHHHcC-CeEEEEEChHHHH-HHHHHHHHHHHHcCCeEE-EEeeCCCCCHHHHHHHHH
Confidence 45555 4899999999999999999998 9999999999877 467999999999999874 344567999999999999
Q ss_pred HhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCC
Q psy2427 102 FVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEP 181 (660)
Q Consensus 102 ~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~ 181 (660)
.++++++|+||||||||++|+||++|.... +|+|+||||+|||||+|+++++++++
T Consensus 81 ~~~~~~~d~IIavGGGsv~D~aK~iA~~~~------------------------~p~i~IPTTa~tgSevt~~avi~~~~ 136 (370)
T 1jq5_A 81 IARKAEAAIVIGVGGGKTLDTAKAVADELD------------------------AYIVIVPTAASTDAPTSALSVIYSDD 136 (370)
T ss_dssp HHHHTTCSEEEEEESHHHHHHHHHHHHHHT------------------------CEEEEEESSCCSSCTTCSEEEEECTT
T ss_pred HHHhcCCCEEEEeCChHHHHHHHHHHHhcC------------------------CCEEEeccccCCCcccCCeEEEEcCC
Confidence 999999999999999999999999995432 89999999999999999999999887
Q ss_pred CCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q psy2427 182 LKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWAR 261 (660)
Q Consensus 182 ~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~ 261 (660)
++.|.+..++ .+|++||+||+++.++|++++++|++|+|+|++|+|++..
T Consensus 137 ~~~k~~~~~~-~~P~~viiDp~ll~tlP~~~~a~g~~Dal~h~~E~~~~~~----------------------------- 186 (370)
T 1jq5_A 137 GVFESYRFYK-KNPDLVLVDTKIIANAPPRLLASGIADALATWVEARSVIK----------------------------- 186 (370)
T ss_dssp SCEEEEEECS-SCCSEEEEEHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
T ss_pred CceEeeccCC-CCCeEEEEChHHHHhCCHHHHHHHHHHHHHHHHHHHHhhh-----------------------------
Confidence 7778888876 6899999999999999999999999999999999998720
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhh
Q psy2427 262 FALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMS 341 (660)
Q Consensus 262 ~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~ 341 (660)
.++. + ..+
T Consensus 187 --------------~~~~----------------------------------~-~~~----------------------- 194 (370)
T 1jq5_A 187 --------------SGGK----------------------------------T-MAG----------------------- 194 (370)
T ss_dssp --------------HTCC----------------------------------C-TTS-----------------------
T ss_pred --------------cCCc----------------------------------c-ccc-----------------------
Confidence 0000 0 000
Q ss_pred HHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccc
Q psy2427 342 APAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHT 421 (660)
Q Consensus 342 l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~ 421 (660)
T Consensus 195 -------------------------------------------------------------------------------- 194 (370)
T 1jq5_A 195 -------------------------------------------------------------------------------- 194 (370)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHH---hcCCCCHH
Q psy2427 422 LSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRA---VYNQDDLE 498 (660)
Q Consensus 422 ~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~---~~~~~~~~ 498 (660)
...+++++.+++.+++.+.++++++ ++++.+.+
T Consensus 195 --------------------------------------------~~~~~~~~~~a~~~~~~l~~~~~~a~~~~k~~~~~~ 230 (370)
T 1jq5_A 195 --------------------------------------------GIPTIAAEAIAEKCEQTLFKYGKLAYESVKAKVVTP 230 (370)
T ss_dssp --------------------------------------------SBCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred --------------------------------------------ccccHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHH
Confidence 0123467888999999999999984 68889999
Q ss_pred HHHHHHHHHH-HHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHH
Q psy2427 499 ARSHMHLASA-MAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAA 577 (660)
Q Consensus 499 ar~~~~~as~-~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia 577 (660)
+|++|++|+. ++|++|.|.|.+++|+|+|.|+++... .++++||+++++ ..++
T Consensus 231 ar~~~~~a~~~~aG~a~~n~g~~~~Hai~~~l~~~~~~---------~~~i~HG~ava~-----------------g~~~ 284 (370)
T 1jq5_A 231 ALEAVVEANTLLSGLGFESGGLAAAHAIHNGFTALEGE---------IHHLTHGEKVAF-----------------GTLV 284 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHGGGSCSG---------GGGSCHHHHHHH-----------------HHHH
T ss_pred HHHHHHHHHHHHhHHHhhccccHHHHHHhhHhhccccC---------CCCCCcHHHHHH-----------------HHHH
Confidence 9999999996 899999999999999999999874200 126999999984 2223
Q ss_pred HHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCC---CCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHH
Q psy2427 578 ELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYT---SADIPALVTGTLPQHRITKLAPREQSEEDLANLFE 654 (660)
Q Consensus 578 ~~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~---~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~ 654 (660)
+.++. ..+ ...++++++|++++|+|++|+++|++ ++++++++++++...+.. .||+++|+|+++++|+
T Consensus 285 ~~~~~---~~~-----~~~~~~i~~l~~~~glP~~l~~~gi~~~~~~~~~~~a~~a~~~~~~~-~~p~~~~~~~i~~il~ 355 (370)
T 1jq5_A 285 QLALE---EHS-----QQEIERYIELYLCLDLPVTLEDIKLKDASREDILKVAKAATAEGETI-HNAFNVTADDVADAIF 355 (370)
T ss_dssp HHHHS---CCC-----HHHHHHHHHHHHHTTCCCSTTTTTCTTCCHHHHHHHHHHHTSTTCGG-GGTCCCCHHHHHHHHH
T ss_pred HHHHc---cCc-----HHHHHHHHHHHHHcCCCCCHHHcCCCcccHHHHHHHHHHHhCcchhh-hCCCCCCHHHHHHHHH
Confidence 32211 111 22478999999999999999999998 789999999998654433 4599999999999999
Q ss_pred HHhh
Q psy2427 655 NSMS 658 (660)
Q Consensus 655 ~a~~ 658 (660)
+++.
T Consensus 356 ~~~~ 359 (370)
T 1jq5_A 356 AADQ 359 (370)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9884
No 14
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.2e-52 Score=456.00 Aligned_cols=351 Identities=18% Similarity=0.157 Sum_probs=287.3
Q ss_pred CceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHH
Q psy2427 20 KEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEA 99 (660)
Q Consensus 20 ~~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~ 99 (660)
..+.|..| ++|+||.|++++++++++++|.+|++||||+++.+ .+.+++.+.|++.|+++. |..+.++|+.++|+++
T Consensus 62 ~~~~f~~p-~~i~~G~g~l~~l~~~l~~~g~~rvlIVtd~~~~~-~~~~~v~~~L~~~gi~~~-~~~~~ge~~~~~v~~~ 138 (450)
T 1ta9_A 62 KDRIFTSP-QKYVQGRHAFTRSYMYVKKWATKSAVVLADQNVWN-ICANKIVDSLSQNGMTVT-KLVFGGEASLVELDKL 138 (450)
T ss_dssp SSEEEECC-SEEEEETTGGGGHHHHHTTTCSSEEEEEEEHHHHH-HTHHHHHHHHHHTTCEEE-EEEECSCCCHHHHHHH
T ss_pred cceEEeCC-ceEEECcCHHHHHHHHHHhcCCCEEEEEECccHHH-HHHHHHHHHHHHCCCeEE-EEeeCCCCCHHHHHHH
Confidence 34567664 89999999999999999999855999999999877 477999999999999873 3345568999999999
Q ss_pred HHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEee
Q psy2427 100 TKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDY 179 (660)
Q Consensus 100 ~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~ 179 (660)
++.+++ ++|+||||||||++|+||++|.... +|+|+||||+|||||+|+++++++
T Consensus 139 ~~~~~~-~~D~IIAvGGGSviD~AK~iA~~~g------------------------iP~I~IPTTAgtgSevt~~avI~~ 193 (450)
T 1ta9_A 139 RKQCPD-DTQVIIGVGGGKTMDSAKYIAHSMN------------------------LPSIICPTTASSDAATSSLSVIYT 193 (450)
T ss_dssp HTTSCT-TCCEEEEEESHHHHHHHHHHHHHTT------------------------CCEEEEESSCSCSCTTCSEEEEC-
T ss_pred HHHHhh-CCCEEEEeCCcHHHHHHHHHHHhcC------------------------CCEEEEeCCCccCcccCCceEEEe
Confidence 999999 9999999999999999999995432 899999999999999999999998
Q ss_pred CCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q psy2427 180 EPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVW 259 (660)
Q Consensus 180 ~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~l 259 (660)
.+++.|.+..++ .+|++||+||+++.++|++++++|++|+|+|++|+|++..
T Consensus 194 ~~~~~k~~~~~~-~~P~~viiDp~ll~tlP~~~~aag~~DaL~h~~E~~~s~~--------------------------- 245 (450)
T 1ta9_A 194 PDGQFQKYSFYP-LNPNLIFIDTDVIVRAPVRFLISGIGDALSTWVETESVIR--------------------------- 245 (450)
T ss_dssp ---CCCEEEECS-SCCSEEEEEHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH---------------------------
T ss_pred CCCceEEecccc-cCCcEEEEchHHHccCCHHHHHHHHHHHHHHHHHHHhccc---------------------------
Confidence 777778888876 7899999999999999999999999999999999998720
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHH
Q psy2427 260 ARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 339 (660)
Q Consensus 260 a~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~ava 339 (660)
.++. + ..+
T Consensus 246 ----------------a~~~----------------------------------~-l~~--------------------- 253 (450)
T 1ta9_A 246 ----------------SNST----------------------------------S-FAG--------------------- 253 (450)
T ss_dssp ----------------TTCC----------------------------------C-TTS---------------------
T ss_pred ----------------CCcc----------------------------------c-ccc---------------------
Confidence 0000 0 000
Q ss_pred hhHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccc
Q psy2427 340 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPL 419 (660)
Q Consensus 340 i~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~ 419 (660)
T Consensus 254 -------------------------------------------------------------------------------- 253 (450)
T 1ta9_A 254 -------------------------------------------------------------------------------- 253 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHH---hcCCCC
Q psy2427 420 HTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRA---VYNQDD 496 (660)
Q Consensus 420 ~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~---~~~~~~ 496 (660)
...+.+++.+++.+++.+.++++++ ++++.|
T Consensus 254 ----------------------------------------------~~~~~~a~~~a~~~~~~l~~~l~~a~~~~k~~~~ 287 (450)
T 1ta9_A 254 ----------------------------------------------GVASIAGRYIARACKDTLEKYALSAILSNTRGVC 287 (450)
T ss_dssp ----------------------------------------------SBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred ----------------------------------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 0123456788999999999999984 578889
Q ss_pred HHHHHHHHHHHH-HHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHH
Q psy2427 497 LEARSHMHLASA-MAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIE 575 (660)
Q Consensus 497 ~~ar~~~~~as~-~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ 575 (660)
.++|++|++|++ ++|++|.|.|.+++|+|+|.|+++... .++++||+++++ ..
T Consensus 288 ~ear~~m~~As~~laG~a~~n~G~~~~Hai~h~l~~~~~~---------~~~i~HG~avAi-----------------g~ 341 (450)
T 1ta9_A 288 TEAFENVVEANTLMSGLGFENGGLAAAHAIHNGMTAIHGP---------VHRLMHGEKVAY-----------------GT 341 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHGGGCGG---------GGGSCHHHHHHH-----------------HH
T ss_pred HHHHHHHHHHHHHHhhHHHhcCCchHHHHHhHHHhccccC---------cCCCCchHhhHH-----------------HH
Confidence 999999999998 899999999999999999999874100 126999999984 22
Q ss_pred HHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCC---CCcHHHHHHhhccCCCCCCCCCccCCHHHHHHH
Q psy2427 576 AAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYT---SADIPALVTGTLPQHRITKLAPREQSEEDLANL 652 (660)
Q Consensus 576 ia~~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~---~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~i 652 (660)
+++.++. +.. ...++++++|++++|+|++|+|+|++ +++++++++.++.+.+...++|+++|+||+++|
T Consensus 342 la~~~l~---~~~-----~~~i~~i~~l~~~lglP~~L~elgi~~~~~~~l~~~a~~a~~~~~~~~~~p~~~t~edi~~i 413 (450)
T 1ta9_A 342 LVQVVLE---DWP-----LEDFNNLASFMAKCHLPITLEELGIPNVTDEELLMVGRATLRPDESIHNMSKKFNPSQIADA 413 (450)
T ss_dssp HHHHHHT---TCC-----HHHHHHHHHHHHHTTCCCSHHHHTCTTCCHHHHHHHHHHHTCTTSGGGGSSSCCCHHHHHHH
T ss_pred HHHHHhc---cCC-----HHHHHHHHHHHHHcCCCCCHHHcCCCCCcHHHHHHHHHHHhhCcccccCCCCCCCHHHHHHH
Confidence 3332211 111 22478999999999999999999998 789999999998665555667999999999999
Q ss_pred HHHHhh
Q psy2427 653 FENSMS 658 (660)
Q Consensus 653 l~~a~~ 658 (660)
|++++.
T Consensus 414 l~~a~~ 419 (450)
T 1ta9_A 414 IKAVDS 419 (450)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999873
No 15
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=100.00 E-value=1.9e-51 Score=440.54 Aligned_cols=340 Identities=14% Similarity=0.136 Sum_probs=287.8
Q ss_pred CCceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHH
Q psy2427 19 DKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLE 98 (660)
Q Consensus 19 ~~~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~ 98 (660)
|+.+.|.+| ++|+||.|++++++++++++|.+|++||||+++.+. ..+++.+.|++.|+++.+|.+ .++|+.+.|++
T Consensus 4 M~~~~~~~p-~~i~~G~g~~~~l~~~l~~~g~~~~livtd~~~~~~-~~~~v~~~L~~~g~~~~~~~~-~~~~~~~~v~~ 80 (354)
T 3ce9_A 4 GISHRIAIP-LILEVGNNKIYNIGQIIKKGNFKRVSLYFGEGIYEL-FGETIEKSIKSSNIEIEAVET-VKNIDFDEIGT 80 (354)
T ss_dssp --CCCCCCC-SEEEEESSCGGGHHHHHGGGTCSEEEEEEETTHHHH-HHHHHHHHHHTTTCEEEEEEE-ECCCBHHHHHH
T ss_pred eeeeEEeCC-cEEEECCCHHHHHHHHHHhcCCCeEEEEECccHHHH-HHHHHHHHHHHcCCeEEEEec-CCCCCHHHHHH
Confidence 455667765 899999999999999999998899999999998774 679999999999999998887 79999999999
Q ss_pred HHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEe
Q psy2427 99 ATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFD 178 (660)
Q Consensus 99 ~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~ 178 (660)
+ +.+++.++|+||||||||++|+||++|.... +|+|+||||++||||+|+.++++
T Consensus 81 ~-~~~~~~~~d~IIavGGGsv~D~aK~vA~~~~------------------------~p~i~IPTT~~tgse~t~~avi~ 135 (354)
T 3ce9_A 81 N-AFKIPAEVDALIGIGGGKAIDAVKYMAFLRK------------------------LPFISVPTSTSNDGFSSPVASLL 135 (354)
T ss_dssp H-HTTSCTTCCEEEEEESHHHHHHHHHHHHHHT------------------------CCEEEEESCCSSGGGTSSEEEEE
T ss_pred H-HHhhhcCCCEEEEECChHHHHHHHHHHhhcC------------------------CCEEEecCcccCCCCCCCceEEE
Confidence 9 9999999999999999999999999995532 89999999999999999999999
Q ss_pred eCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q psy2427 179 YEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDV 258 (660)
Q Consensus 179 ~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 258 (660)
+.+ .|..+ +..+|++||+||+++.++|++++++|++|+|+|+.|.+-..
T Consensus 136 ~~~--~K~~i--~~~~P~~vi~Dp~ll~tlP~~~~~~g~~Dal~h~~~~~d~~--------------------------- 184 (354)
T 3ce9_A 136 ING--KRTSV--PAKTPDGIVVDIDVIKGSPEKFIYSGIGDLVSNITALYDWK--------------------------- 184 (354)
T ss_dssp ETT--EEEEE--ECCCCSEEEEEHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH---------------------------
T ss_pred eCC--ceeee--cCCCCcEEEEcHHHHHhCCHHHHHhhHHHHHHHHHHHHHHH---------------------------
Confidence 864 35555 36789999999999999999999999999999998764210
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHH
Q psy2427 259 WARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSV 338 (660)
Q Consensus 259 la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~av 338 (660)
+...+
T Consensus 185 ------------~~~~~--------------------------------------------------------------- 189 (354)
T 3ce9_A 185 ------------FEEEN--------------------------------------------------------------- 189 (354)
T ss_dssp ------------HHHHT---------------------------------------------------------------
T ss_pred ------------HHHhh---------------------------------------------------------------
Confidence 00000
Q ss_pred HhhHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccccc
Q psy2427 339 VMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDP 418 (660)
Q Consensus 339 ai~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~ 418 (660)
T Consensus 190 -------------------------------------------------------------------------------- 189 (354)
T 3ce9_A 190 -------------------------------------------------------------------------------- 189 (354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q psy2427 419 LHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLE 498 (660)
Q Consensus 419 ~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ 498 (660)
.+ ...+|+++.+++++++.+.++++.+++ +.+
T Consensus 190 --------------------------~~-------------------~~~~~~~~~la~~~~~~i~~~l~~~~~---~~~ 221 (354)
T 3ce9_A 190 --------------------------HK-------------------SIIDDFAVMISKKSVNSFVRTDFKSIK---DEV 221 (354)
T ss_dssp --------------------------TS-------------------CCCCHHHHHHHHHHHHHHHHCCCSCTT---CHH
T ss_pred --------------------------cc-------------------CCCCHHHHHHHHHHHHHHHHhHHHHhc---CHH
Confidence 00 034567788888888888888766655 788
Q ss_pred HHHHHHHHHHHHhHhhhcccc-----hhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHH
Q psy2427 499 ARSHMHLASAMAGVGFGNAGV-----HLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERH 573 (660)
Q Consensus 499 ar~~~~~as~~ag~~~~~~g~-----~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~ 573 (660)
+|++|++++++||++|+++|+ |..|+++|.|++.+. ++++||+++++. +.++.|+...
T Consensus 222 ~~~~~l~a~~~aG~a~~~~g~~r~~~g~~H~i~hal~~~~~-----------~~~~HG~avai~-~~~~~~~~~~----- 284 (354)
T 3ce9_A 222 FLKELVDSLTMNGIAMEIAGNSSPASGAEHLISHALDKFLP-----------NPQLHGIQVGVA-TYIMSKVHKH----- 284 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSTTTCSHHHHHHHHHHHHCS-----------SCCCHHHHHHHH-HHHHHHHHTS-----
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCcccchHHHHhHHHHhCCC-----------CCCCcHHHHHHH-HHHHHHHccc-----
Confidence 999999999999999999998 799999999998641 269999999997 5888887641
Q ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccC--CCCCCCCCccCCHHHHHH
Q psy2427 574 IEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQ--HRITKLAPREQSEEDLAN 651 (660)
Q Consensus 574 ~~ia~~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~--~~~~~~~P~~~t~e~i~~ 651 (660)
..+++++|++++|+|++|+++|+++++++++++.+... +++..+||+++|+||+++
T Consensus 285 ----------------------~~~~i~~l~~~~glP~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 342 (354)
T 3ce9_A 285 ----------------------REERIKKILSDTGFFNYVKGLNMKKSDFKRAISEAHLIKPARYTYLHVEKNCETAKEI 342 (354)
T ss_dssp ----------------------SHHHHHHHHHHTTHHHHHHTTCCCHHHHHHHHHHHHHHSTTSCCGGGSHHHHHHHHHH
T ss_pred ----------------------cHHHHHHHHHHCCCCCCHHHcCCCHHHHHHHHHHHHHhccCceeecCCCCCCHHHHHH
Confidence 14679999999999999999999999999999988642 466667999999999999
Q ss_pred HHHHHhhc
Q psy2427 652 LFENSMSV 659 (660)
Q Consensus 652 il~~a~~~ 659 (660)
||+.++.+
T Consensus 343 i~~~~~~~ 350 (354)
T 3ce9_A 343 VDTDEILR 350 (354)
T ss_dssp HHHCHHHH
T ss_pred HHHhHHHH
Confidence 99987643
No 16
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=100.00 E-value=3.3e-38 Score=337.50 Aligned_cols=268 Identities=20% Similarity=0.201 Sum_probs=207.2
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCC-CeEEEEeCcccCCCHHHHHHHHHHhHhc
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHG-VKFELFDKVRVEPTGDSFLEATKFVRSV 106 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~g-i~~~~~~~~~~~p~~~~v~~~~~~~~~~ 106 (660)
|++|+||.|++++++++++++ +|++||||+++.+. +.+++.+.| +.| +.+.+|++++++|+.+.++++++.++++
T Consensus 11 ~~~i~~G~g~l~~l~~~l~~~--~~~liVtd~~~~~~-~~~~v~~~L-~~g~~~~~~~~~~e~~p~~~~v~~~~~~~~~~ 86 (354)
T 1xah_A 11 NYPIYVEHGAIKYIGTYLNQF--DQSFLLIDEYVNQY-FANKFDDIL-SYENVHKVIIPAGEKTKTFEQYQETLEYILSH 86 (354)
T ss_dssp CCEEEEETTGGGHHHHHHTTC--SCEEEEEEHHHHHH-HHHHHC-------CEEEEEECSGGGGCSHHHHHHHHHHHHTT
T ss_pred CccEEEcCChHHHHHHHHHhc--CeEEEEECCcHHHH-HHHHHHHHH-hcCCeEEEEECCCCCCCCHHHHHHHHHHHHHc
Confidence 579999999999999999887 89999999998877 779999999 777 6667899999999999999999999999
Q ss_pred CC---CEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCc-CccccCceEEeeCCC
Q psy2427 107 QC---DAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGT-GSETTGVSIFDYEPL 182 (660)
Q Consensus 107 ~~---D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gt-gse~s~~avi~~~~~ 182 (660)
++ |+||||||||++|+||++|..+.++ +|+|+||||+++ +|+++...+++++..
T Consensus 87 ~~~r~d~iIavGGGsv~D~ak~vA~~~~rg----------------------ip~i~IPTT~~a~ds~vg~K~~i~~~~~ 144 (354)
T 1xah_A 87 HVTRNTAIIAVGGGATGDFAGFVAATLLRG----------------------VHFIQVPTTILAHDSSVGGKVGINSKQG 144 (354)
T ss_dssp CCCTTCEEEEEESHHHHHHHHHHHHHBTTC----------------------CEEEEEECSTTHHHHTSSCEEEECCSSS
T ss_pred CCCCCceEEEECChHHHHHHHHHHHHhccC----------------------CCEEEECCcccccccccCceEEEEcCCc
Confidence 99 9999999999999999999988755 999999999866 688888888876543
Q ss_pred CceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHH---HHhhcCCCCCCCCCCCCCCCCCCCCCCCHHH--H
Q psy2427 183 KAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL---ESFTALPYTERTPCPTDPLLRPAYQGQNPVS--D 257 (660)
Q Consensus 183 ~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~hai---E~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s--~ 257 (660)
+ .+.++..+|++||+||+++.++|++++++|++|+|+|++ |+|++. ..++++ +
T Consensus 145 k---n~~g~~~~P~~viiDp~~l~tlP~~~~~aG~~d~lkha~i~De~~~~~-------------------~~~~~~~~~ 202 (354)
T 1xah_A 145 K---NLIGAFYRPTAVIYDLDFLKTLPFKQILSGYAEVYKHALLNGESATQD-------------------IEQHFKDRE 202 (354)
T ss_dssp T---TCEEEECCCSEEEEEGGGGGGCCHHHHHHHHHHHHHHHHHHCHHHHHH-------------------HHHHSCSHH
T ss_pred e---eeeecCCCCcEEEEcHHHHhhCCHHHHHHHHHHHHHHHHHcCHHHHHH-------------------HHhhhhhhh
Confidence 2 334445679999999999999999999999999999999 898873 123333 4
Q ss_pred HH-HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchh
Q psy2427 258 VW-ARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGL 336 (660)
Q Consensus 258 ~l-a~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~ 336 (660)
.+ ++ +.+.+.++++++++.+..+|+.... ++.++. +++|+++|+|+ .+ + +++||+
T Consensus 203 ~~~a~---~~l~~~l~~~~~~~~~~~~~d~~e~----g~r~~l----~~gHt~~Hale-~~---~---------~~~HG~ 258 (354)
T 1xah_A 203 ILQSL---NGMDKYIAKGIETKLDIVVADEKEQ----GVRKFL----NLGHTFGHAVE-YY---H---------KIPHGH 258 (354)
T ss_dssp HHHHT---TTHHHHHHHHHHHHHHHHHHSTTSS----SGGGGG----GTTTHHHHHHH-HH---H---------CCCHHH
T ss_pred hhhHH---HHHHHHHHHHHHHHHHHhccCchhh----CCcccc----ccHHHHHHHHh-cC---C---------CCCcHH
Confidence 44 33 5567777777665555544433221 333444 45566666666 32 0 299999
Q ss_pred HHHhhHHHHHHhhhc-----CCchhhhhHhhhhccc
Q psy2427 337 SVVMSAPAVFNFTAA-----SSPERHIEAAELLGAD 367 (660)
Q Consensus 337 avai~l~~~l~~~~~-----~~~er~~~la~~lg~~ 367 (660)
+||++||.+.++... ...+++.++.+.+|+|
T Consensus 259 avaig~~~~~~la~~~g~~~~~~~~i~~l~~~~glP 294 (354)
T 1xah_A 259 AVMVGIIYQFIVANALFDSKHDISHYIQYLIQLGYP 294 (354)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCcC
Confidence 999999999887642 4557777788888853
No 17
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=100.00 E-value=7.8e-38 Score=335.82 Aligned_cols=275 Identities=13% Similarity=0.057 Sum_probs=206.1
Q ss_pred cceEEECcChHHHHHHHHHhc-CCCEEEEEECccccccchHHHHHHHHHhCCCeE--EEEeCcccCCCHHHHHHHHHHhH
Q psy2427 28 SSTIRIGPGVTREVGMDMVNM-KAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKF--ELFDKVRVEPTGDSFLEATKFVR 104 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~-g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~--~~~~~~~~~p~~~~v~~~~~~~~ 104 (660)
|.+|+||.|+++++++++ ++ +.+|++||||+++.+. +.+++.+.|++. +.+ .+|++.+++|+.+.+.++++.++
T Consensus 12 ~~~i~~G~g~l~~l~~~l-~~~~~~k~liVtd~~v~~~-~~~~v~~~L~~~-~~~~~~~~~~ge~~k~~~~v~~~~~~~~ 88 (368)
T 2gru_A 12 CFNFAFGEHVLESVESYI-PRDEFDQYIMISDSGVPDS-IVHYAAEYFGKL-APVHILRFQGGEEYKTLSTVTNLQERAI 88 (368)
T ss_dssp EEEEEEETTSGGGGGGTS-CTTSCSEEEEEEETTSCHH-HHHHHHHHHTTT-SCEEEEEECCSGGGCSHHHHHHHHHHHH
T ss_pred CceEEEeCCHHHHHHHHH-hccCCCEEEEEECCcHHHH-HHHHHHHHHHhc-cceeEEEeCCCCCCCCHHHHHHHHHHHH
Confidence 478999999999999988 76 4589999999998877 679999999876 554 67899999999999999999999
Q ss_pred hcC---CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCC--CCcCccccCceEEee
Q psy2427 105 SVQ---CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTT--SGTGSETTGVSIFDY 179 (660)
Q Consensus 105 ~~~---~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt--~gtgse~s~~avi~~ 179 (660)
+++ +|+||||||||++|+||++|..+.++ +|+|+|||| +++||++++++++++
T Consensus 89 ~~~~~r~d~iIalGGGsv~D~ak~~Aa~~~rg----------------------ip~i~IPTTlla~tdS~v~~kt~I~~ 146 (368)
T 2gru_A 89 ALGANRRTAIVAVGGGLTGNVAGVAAGMMFRG----------------------IALIHVPTTFLAASDSVLSIKQAVNL 146 (368)
T ss_dssp HTTCCTTEEEEEEESHHHHHHHHHHHHHBTTC----------------------CEEEEEECSHHHHHTTTSSCEEEEEE
T ss_pred hcCCCCCcEEEEECChHHHHHHHHHHHHhcCC----------------------CCEEEECCchHhhcCCCcCCeEEEEC
Confidence 988 69999999999999999999988765 999999998 589999999999998
Q ss_pred CCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q psy2427 180 EPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVW 259 (660)
Q Consensus 180 ~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~l 259 (660)
+..+.+.+ ...+|++||+||+++.|+|++++++|++|+|+|++++.+.. +..... + ...+.... .
T Consensus 147 ~~~Kn~ig---~~~~P~~viiD~~~l~tlP~~~~~aG~~d~lkha~i~d~~~-~~~l~~---~---~~~l~~~~---~-- 211 (368)
T 2gru_A 147 TSGKNLVG---FYYPPRFVFADTRILSESPPRQVKAGMCELVKNMLILENDN-KEFTED---D---LNSANVYS---P-- 211 (368)
T ss_dssp TTEEEEEE---EECCCSEEEEEHHHHHTSCHHHHHHHHHHHHHHHHHSCCSC-CSCCGG---G---CCTTCCCC---H--
T ss_pred CCceeEee---cCCCCCEEEEchHHHcCCCHHHHHHHHHHHHHHHHHcCHHH-HHHHHh---h---HHHHHhhc---H--
Confidence 65433333 44579999999999999999999999999999999873321 000000 0 00000000 1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-hhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHH
Q psy2427 260 ARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGV-GFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSV 338 (660)
Q Consensus 260 a~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~-a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~av 338 (660)
+.+.+.+.+.+... + ..+..+...+|+ ++.|.|++++|+|+|.++ + .++||++|
T Consensus 212 -----~~l~~~i~~~~~~k----~-~~v~~d~~e~G~r~~ln~Ght~~Haie~~~~--~-------------~~~HGeav 266 (368)
T 2gru_A 212 -----KQLETFINFCISAK----M-SVLSEDIYEKKKGLIFEYGHTIGHAIELAEQ--G-------------GITHGEAI 266 (368)
T ss_dssp -----HHHHHHHHHHHHHH----H-HHHTTCTTSSSGGGGGGTTHHHHHHHHHHTT--T-------------SSCHHHHH
T ss_pred -----HHHHHHHHHHHHHH----H-HHhccCchhhCchhhhcchhHHHHHHHHccC--C-------------CCChHHHH
Confidence 11112222211100 0 012223356788 688999999999988875 2 29999999
Q ss_pred HhhHHHHHHhhhc------CCchhhhhHhhhhccc
Q psy2427 339 VMSAPAVFNFTAA------SSPERHIEAAELLGAD 367 (660)
Q Consensus 339 ai~l~~~l~~~~~------~~~er~~~la~~lg~~ 367 (660)
|++|+.++.+... ...+++.++.+.+|.|
T Consensus 267 Aigm~~~~~la~~~g~~~~~~~~~i~~ll~~~glP 301 (368)
T 2gru_A 267 AVGMIYAAKIANRMNLMPEHDVSAHYWLLNKIGAL 301 (368)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Confidence 9999999887653 2345666677777753
No 18
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=100.00 E-value=6.5e-38 Score=339.28 Aligned_cols=288 Identities=15% Similarity=0.145 Sum_probs=208.4
Q ss_pred CCceeEEeccceEEECcCh-HHHHHHHH-HhcCCCEEEEEECccccccchHHHHHHHHHhC------CCeE--EEEeCcc
Q psy2427 19 DKEYAFEMASSTIRIGPGV-TREVGMDM-VNMKAQRVCVMTDPHLSKLAPVKATLDSLTRH------GVKF--ELFDKVR 88 (660)
Q Consensus 19 ~~~~~~~~~~~~i~~G~g~-~~~l~~~l-~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~------gi~~--~~~~~~~ 88 (660)
|..|.|..+ ++|+||.|+ ++++++.+ +.++.+|++||||+++.+. +.+++.+.|++. |+++ .++...+
T Consensus 4 ~~~f~~~~~-~~i~~G~g~~~~~l~~~~~~~~~~~k~liVtd~~v~~~-~~~~v~~~L~~~~~~~~~g~~~~~~~~~~gE 81 (393)
T 1sg6_A 4 PTKISILGR-ESIIADFGLWRNYVAKDLISDCSSTTYVLVTDTNIGSI-YTPSFEEAFRKRAAEITPSPRLLIYNRPPGE 81 (393)
T ss_dssp CEEEEETTE-EEEEEETTHHHHTHHHHHHHHSCCSEEEEEEEHHHHHH-HHHHHHHHHHHHHHHSSSCCEEEEEEECSSG
T ss_pred ceeEEecCC-ceEEEeCCccHHHHHHHHHHhcCCCeEEEEECCcHHHH-HHHHHHHHHHhhhccccCCceeEEEEeCCCC
Confidence 667777664 899999999 78899775 6677799999999998877 779999999887 7776 3677888
Q ss_pred cCCCHHHHHHHHHHhHhcC--C---CEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcC
Q psy2427 89 VEPTGDSFLEATKFVRSVQ--C---DAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPT 163 (660)
Q Consensus 89 ~~p~~~~v~~~~~~~~~~~--~---D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPT 163 (660)
++|+.++++++++.+++++ + |+||||||||++|+||++|..+.++ +|+|+|||
T Consensus 82 ~~k~~~~v~~~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~~rg----------------------ip~i~IPT 139 (393)
T 1sg6_A 82 VSKSRQTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGFVASTYMRG----------------------VRYVQVPT 139 (393)
T ss_dssp GGSSHHHHHHHHHHHHTSSSCCCTTCEEEEEESHHHHHHHHHHHHHGGGC----------------------CEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCCCCEEEEECCcHHHHHHHHHHHHhcCC----------------------CCEEEECC
Confidence 8999999999999999999 9 9999999999999999999988765 99999999
Q ss_pred CCCcCccccCceEEeeCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHH--------------HHhh
Q psy2427 164 TSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL--------------ESFT 229 (660)
Q Consensus 164 t~gtgse~s~~avi~~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~hai--------------E~~~ 229 (660)
|++++++++ +++++..+.+.|+.+.++..+|++||+||+++.|+|++++++|++|+++|++ |+|+
T Consensus 140 Tlla~~das-vg~kt~i~~~~~kn~~g~~~~P~~viiD~~~l~tlP~~~~~sG~aE~iK~~~i~d~~~~~~l~~~~e~~~ 218 (393)
T 1sg6_A 140 TLLAMVDSS-IGGKTAIDTPLGKNLIGAIWQPTKIYIDLEFLETLPVREFINGMAEVIKTAAISSEEEFTALEENAETIL 218 (393)
T ss_dssp SHHHHHTTT-SSCEEEEEETTEEEEEEEECCCSEEEEEGGGGGTSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred chhhhhhcC-cceEEeecCCCcccccccccCCcEEEEchHHHccCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHhHHHHH
Confidence 998887773 5555443344566677777889999999999999999999999988887754 4444
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccc
Q psy2427 230 ALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGL 309 (660)
Q Consensus 230 s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i 309 (660)
+.. .+|+++.+ .+++.+.+.++.++.+..+.+++. +......+|+. .+++++|++
T Consensus 219 ~~~-------------------~~~~~d~~--~a~~~i~~~l~~~i~~~~~~k~~~-v~~d~~e~G~~---~~l~~gHt~ 273 (393)
T 1sg6_A 219 KAV-------------------RREVTPGE--HRFEGTEEILKARILASARHKAYV-VSADEREGGLR---NLLNWGHSI 273 (393)
T ss_dssp HHH-------------------HCCCCTTS--CTTGGGHHHHHHHHHHHHHHHHHH-HHC-----CGG---GGGGTTHHH
T ss_pred hhc-------------------cccccchh--hhHHHHHHHHHHHHHHHHHHHHHH-hCcChhhhcch---hhhChHHHH
Confidence 310 11111110 111222233333333222222221 11233345552 267789999
Q ss_pred cccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHHhhhc------CCchhhhhHhhhhccc
Q psy2427 310 SYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAA------SSPERHIEAAELLGAD 367 (660)
Q Consensus 310 ~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~~~~~------~~~er~~~la~~lg~~ 367 (660)
+|+|+..+. +.++||++||++|+...++... ...+++.++.+.+|+|
T Consensus 274 ~Hale~~~~-----------~~~~HGeavAigm~~~~~la~~~g~~~~~~~~~i~~ll~~~glP 326 (393)
T 1sg6_A 274 GHAIEAILT-----------PQILHGECVAIGMVKEAELARHLGILKGVAVSRIVKCLAAYGLP 326 (393)
T ss_dssp HHHHHHHHT-----------TTSCHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCC-----------CCCCcHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Confidence 999987642 1399999999999988776542 2345666677777754
No 19
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=100.00 E-value=2.1e-35 Score=313.91 Aligned_cols=261 Identities=16% Similarity=0.178 Sum_probs=193.0
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
+.+|+| |+++++++ + +|++||||+++.+. +.+++.+.|++.++.+.+|++++++|+.+.++++++.+++++
T Consensus 12 ~~~i~~--g~l~~l~~-----~-~~~livtd~~v~~~-~~~~v~~~L~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~ 82 (343)
T 3clh_A 12 NYKVFL--GELPEIKL-----K-QKALIISDSIVAGL-HLPYLLERLKALEVRVCVIESGEKYKNFHSLERILNNAFEMQ 82 (343)
T ss_dssp SCBEEE--SSCCCEEC-----S-SCEEEEEEHHHHTT-THHHHHTTEECSCEEEEEECSSGGGCSHHHHHHHHHHHHHTT
T ss_pred ceEEEE--EehhhcCC-----C-CEEEEEECCcHHHH-HHHHHHHHHHhCCcEEEEeCCCCCCCCHHHHHHHHHHHHhcC
Confidence 478888 88877764 4 89999999998876 679999999877888888999999999999999999999999
Q ss_pred C---CEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCC--CCcCccccCceEEeeCCC
Q psy2427 108 C---DAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTT--SGTGSETTGVSIFDYEPL 182 (660)
Q Consensus 108 ~---D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt--~gtgse~s~~avi~~~~~ 182 (660)
+ |+||||||||++|+||++|..+.++ +|+|+|||| +++||.+++...++.+
T Consensus 83 ~~r~d~iIavGGGsv~D~ak~~A~~~~rg----------------------ip~i~IPTTlla~vDasvg~k~~v~~~-- 138 (343)
T 3clh_A 83 LNRHSLMIALGGGVISDMVGFASSIYFRG----------------------IDFINIPTTLLAQVDASVGGKTGINTP-- 138 (343)
T ss_dssp CCTTCEEEEEESHHHHHHHHHHHHHBTTC----------------------CEEEEEECSHHHHHTTSSSCEEEEEET--
T ss_pred CCCCceEEEECChHHHHHHHHHHHHhccC----------------------CCEEEeCCchhhccccccCCeEEEECc--
Confidence 9 9999999999999999999988765 999999999 4557788887777654
Q ss_pred CceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHH---HHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q psy2427 183 KAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL---ESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVW 259 (660)
Q Consensus 183 ~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~hai---E~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~l 259 (660)
+.|..+ ++..+|++||+||+++.|+|++++++|++|+|+|++ |.|++... .+++++.
T Consensus 139 ~~Kn~i-g~~~~P~~vi~D~~~l~tlP~~~~~ag~~d~lkh~~i~d~~~~~~l~------------------~~~~~~~- 198 (343)
T 3clh_A 139 YGKNLI-GSFHQPKAVYMDLAFLKTLEKREFQAGVAEIIKMAVCFDKNLVERLE------------------TKDLKDC- 198 (343)
T ss_dssp TEEEEE-EEECCCSEEEECTTSGGGSCHHHHHHHHHHHHHHHHHHCHHHHHHHH------------------HSCTTTS-
T ss_pred cccccc-ccCCCCCEEEEcHHHHhcCCHHHHHhHHHHHHHHHHHcCHHHHHHHH------------------hCcCCHH-
Confidence 456555 567889999999999999999999999999999999 67765310 0112222
Q ss_pred HHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHH
Q psy2427 260 ARFALQTIRQYFKRAV-YNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSV 338 (660)
Q Consensus 260 a~~ai~~i~~~l~~~~-~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~av 338 (660)
+.+.++...+.-...+ .|+.+...|. ..+++|+++|+|+...+ |+ .++||++|
T Consensus 199 ~~~~i~~~~~~k~~vv~~d~~e~g~r~----------------~ln~gHt~~Hale~~~~-~~---------~~~HGeav 252 (343)
T 3clh_A 199 LEEVIFQSVNIKAQVVVQDEKEQNIRA----------------GLNYGHTFGHAIEKETD-YE---------RFLHGEAI 252 (343)
T ss_dssp HHHHHHHHHHHHHHHC---------CT----------------TTTTTHHHHHHHHHHTT-TS---------SCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCchhhhHHH----------------HHhhHHHHHHHHHhhcC-CC---------CCChHHHH
Confidence 2333333333323332 2443333333 12356777777765421 10 39999999
Q ss_pred HhhHHHHHHhhhc------CCchhhhhHhhhhccc
Q psy2427 339 VMSAPAVFNFTAA------SSPERHIEAAELLGAD 367 (660)
Q Consensus 339 ai~l~~~l~~~~~------~~~er~~~la~~lg~~ 367 (660)
|++|+.++++... ...+++.++.+.+|.|
T Consensus 253 Aig~~~~~~la~~~g~~~~~~~~~i~~ll~~~glP 287 (343)
T 3clh_A 253 AIGMRMANDLALSLGMLTLKEYERIENLLKKFDLI 287 (343)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Confidence 9999999887642 2346666677777753
No 20
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=100.00 E-value=3.8e-34 Score=306.00 Aligned_cols=171 Identities=23% Similarity=0.230 Sum_probs=151.9
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEE--EEeCcccCCCHHHHHHHHHHhHh
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE--LFDKVRVEPTGDSFLEATKFVRS 105 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~--~~~~~~~~p~~~~v~~~~~~~~~ 105 (660)
+.+|+||.|++++++ +++..+.+|++||||+++.+. +.+++.+.|++.|+++. +|++++++|+.+.++++++.+++
T Consensus 41 ~y~I~~G~g~l~~l~-~l~~~~~~rvlIVtd~~v~~~-~~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~ 118 (390)
T 3okf_A 41 SYPISIGAGLFANPA-LLSLSAKQKVVIVTNHTVAPL-YAPAIISLLDHIGCQHALLELPDGEQYKTLETFNTVMSFLLE 118 (390)
T ss_dssp CEEEEEETTGGGCGG-GGCCCTTCEEEEEEETTTHHH-HHHHHHHHHHHHTCEEEEEEECSSGGGCBHHHHHHHHHHHHH
T ss_pred CCCEEEeCCHHHhHH-HHHhcCCCEEEEEECCcHHHH-HHHHHHHHHHHcCCeEEEEEECCCcCCchHHHHHHHHHHHHh
Confidence 678999999999999 887766799999999999877 77999999999998864 57899999999999999999999
Q ss_pred cCC---CEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC--CcCccccCceEEeeC
Q psy2427 106 VQC---DAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS--GTGSETTGVSIFDYE 180 (660)
Q Consensus 106 ~~~---D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~--gtgse~s~~avi~~~ 180 (660)
+++ |+||||||||++|+||++|..+.++ +|+|+||||+ +++|.+++.++++.+
T Consensus 119 ~~~~R~d~IIAvGGGsv~D~ak~~Aa~~~rg----------------------ip~I~IPTTlla~vDssvggkt~I~~~ 176 (390)
T 3okf_A 119 HNYSRDVVVIALGGGVIGDLVGFAAACYQRG----------------------VDFIQIPTTLLSQVDSSVGGKTAVNHP 176 (390)
T ss_dssp TTCCTTCEEEEEESHHHHHHHHHHHHHBTTC----------------------CEEEEEECSHHHHHHTSSSCEEEEEET
T ss_pred cCCCcCcEEEEECCcHHhhHHHHHHHHhcCC----------------------CCEEEeCCCCccccccCcCCeEEEEcC
Confidence 999 7999999999999999999888765 9999999995 667888888888876
Q ss_pred CCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHH
Q psy2427 181 PLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL 225 (660)
Q Consensus 181 ~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~hai 225 (660)
..+...+.+ ..|++||+||+++.++|++++++|++|+|+|++
T Consensus 177 ~~Kn~ig~f---~~P~~ViiD~~~l~tlP~r~~~aG~~D~lkha~ 218 (390)
T 3okf_A 177 LGKNMIGAF---YQPKAVVIDTDCLTTLPAREFAAGMAEVIKYGI 218 (390)
T ss_dssp TEEEEEEEE---CCCSEEEEEGGGGGGSCHHHHHHHHHHHHHHHH
T ss_pred CCceEEeec---cCCCEEEEcHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 544444433 469999999999999999999999999999997
No 21
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=100.00 E-value=9.3e-34 Score=301.70 Aligned_cols=258 Identities=14% Similarity=0.094 Sum_probs=191.5
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
|++|+||.|++++++++ + +|++||||+++.+ +.+++.+.|+ .++. .+|++++++|+.+.++++++.+++++
T Consensus 11 ~~~i~~G~g~l~~l~~~----~-~kvliVtd~~v~~--~~~~v~~~L~-~~~~-~~~~~ge~~~~~~~v~~~~~~~~~~~ 81 (348)
T 1ujn_A 11 PYPILVGEGVLKEVPPL----A-GPAALLFDRRVEG--FAQEVAKALG-VRHL-LGLPGGEAAKSLEVYGKVLSWLAEKG 81 (348)
T ss_dssp CEEEEEESCGGGGSCCC----S-SCEEEEEEGGGHH--HHHHHHHHHT-CCCE-EEECCSGGGSSHHHHHHHHHHHHHHT
T ss_pred CeeEEEcCChHHhhHhh----C-CEEEEEECCcHHH--HHHHHHHHhc-cCeE-EEECCCCCCCCHHHHHHHHHHHHHcC
Confidence 57999999999988764 4 8999999999877 6799999998 6778 88999999999999999999999988
Q ss_pred C---CEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC--CcCccccCceEEeeCCC
Q psy2427 108 C---DAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS--GTGSETTGVSIFDYEPL 182 (660)
Q Consensus 108 ~---D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~--gtgse~s~~avi~~~~~ 182 (660)
+ |+||||||||++|+||++|..+.++ +|+|+||||+ +++|.+++...++.+..
T Consensus 82 ~~r~d~IIavGGGsv~D~ak~~A~~~~rg----------------------ip~i~IPTTlla~vds~~g~k~~i~~~~~ 139 (348)
T 1ujn_A 82 LPRNATLLVVGGGTLTDLGGFVAATYLRG----------------------VAYLAFPTTTLAIVDASVGGKTGINLPEG 139 (348)
T ss_dssp CCTTCEEEEEESHHHHHHHHHHHHHBTTC----------------------CEEEEEECSHHHHHTTTSSCEEEEEETTE
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhccC----------------------CCEEEecCcHHHhhccccCceEEEecCCc
Confidence 7 8999999999999999999987755 8999999996 34677788877776532
Q ss_pred CceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHH---Hhh---cCCCCCCCCCCCCCCCCCCCCCCCHHH
Q psy2427 183 KAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALE---SFT---ALPYTERTPCPTDPLLRPAYQGQNPVS 256 (660)
Q Consensus 183 ~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE---~~~---s~~~~~~~~~~~~~~~~~~~~~~~~~s 256 (660)
| .+.+....|++||+||+++.++|++++++|++|+|+|+++ .|+ +.. ..++
T Consensus 140 --k-n~ig~~~~P~~vi~D~~~l~tlP~~~~~aG~~d~lkh~~i~d~~~~~~~~~l------------------~~~~-- 196 (348)
T 1ujn_A 140 --K-NLVGAFHFPQGVYAELRALKTLPLPTFKEGLVEAFKHGLIAGDEALLKVEDL------------------TPQS-- 196 (348)
T ss_dssp --E-EEEEEECCCSEEEEEGGGGGGSCHHHHHHHHHHHHHHHHHHTCGGGGCCTTC------------------CTTC--
T ss_pred --c-eeeccCcCCCEEEECHHHHhhCCHHHHHhHHHHHHHHHHHcCHHHhcchHHH------------------HhhH--
Confidence 3 3434556799999999999999999999999999999996 455 310 1111
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchh
Q psy2427 257 DVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGL 336 (660)
Q Consensus 257 ~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~ 336 (660)
+.+.+...+.+......+..|+.+... +...+++|+++|+|+...+ ++++||+
T Consensus 197 ~~l~~~i~~~~~~k~~~v~~d~~e~g~----------------r~~ln~GHt~~Hale~~~~-----------~~~~HGe 249 (348)
T 1ujn_A 197 PRLEAFLARAVAVKVRVTEEDPLEKGK----------------RRLLNLGHTLGHALEAQTR-----------HALPHGM 249 (348)
T ss_dssp TTHHHHHHHHHHHHHHHHHHCTTSSSG----------------GGGGGTTHHHHHHHHHHTT-----------TCSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCchhhch----------------hhHhcchHHHHHHHHhccC-----------CCCChHH
Confidence 222211112222222222334433211 1234456777777765421 1399999
Q ss_pred HHHhhHHHHHHhhhc----CCchhhhhHhhhhccc
Q psy2427 337 SVVMSAPAVFNFTAA----SSPERHIEAAELLGAD 367 (660)
Q Consensus 337 avai~l~~~l~~~~~----~~~er~~~la~~lg~~ 367 (660)
+||++|+...++... ...+++.++.+.+| |
T Consensus 250 avAig~~~~~~la~~~g~~~~~~~i~~ll~~~g-P 283 (348)
T 1ujn_A 250 AVAYGLLYAALLGRALGGEDLLPPVRRLLLWLS-P 283 (348)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHC-C
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-C
Confidence 999999988877532 35567777777777 5
No 22
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=100.00 E-value=1.7e-33 Score=299.42 Aligned_cols=169 Identities=17% Similarity=0.219 Sum_probs=148.9
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEE--EEeCcccCCCHHHHHHHHHHhHh
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE--LFDKVRVEPTGDSFLEATKFVRS 105 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~--~~~~~~~~p~~~~v~~~~~~~~~ 105 (660)
|++|+||.|+++++++++++. +|++||||+++.+. .+++.+.|++.|+++. +|++++++|+.++++++++.+++
T Consensus 23 ~~~I~~G~g~l~~l~~~l~~~--~rvlIVtd~~v~~~--~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~ 98 (368)
T 3qbe_A 23 PYPVVIGTGLLDELEDLLADR--HKVAVVHQPGLAET--AEEIRKRLAGKGVDAHRIEIPDAEAGKDLPVVGFIWEVLGR 98 (368)
T ss_dssp CEEEEEESCCHHHHHHHHTTC--SEEEEEECGGGHHH--HHHHHHHHHHTTCEEEEEECCSGGGGGBHHHHHHHHHHHHH
T ss_pred CceEEEcCCHHHHHHHHHHcC--CEEEEEECccHHHH--HHHHHHHHHhcCCcceEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999874 89999999998875 5899999999998864 57889999999999999999998
Q ss_pred cC---CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCC--cCccccCceEEeeC
Q psy2427 106 VQ---CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSG--TGSETTGVSIFDYE 180 (660)
Q Consensus 106 ~~---~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~g--tgse~s~~avi~~~ 180 (660)
++ +|+||||||||++|+||++|..+.++ +|+|+||||++ ++|.+++...++.+
T Consensus 99 ~~~~r~d~IIavGGGsv~D~ak~~Aa~~~rg----------------------ip~i~IPTTlla~vDssvggkt~V~~~ 156 (368)
T 3qbe_A 99 IGIGRKDALVSLGGGAATDVAGFAAATWLRG----------------------VSIVHLPTTLLGMVDAAVGGKTGINTD 156 (368)
T ss_dssp HTCCTTCEEEEEESHHHHHHHHHHHHHGGGC----------------------CEEEEEECSHHHHHTTTSSCEEEEEET
T ss_pred cCCCCCcEEEEECChHHHHHHHHHHHHhccC----------------------CcEEEECCCCccccccCcCceEEEECC
Confidence 76 59999999999999999999888765 89999999976 68899888777654
Q ss_pred CCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHH
Q psy2427 181 PLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL 225 (660)
Q Consensus 181 ~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~hai 225 (660)
. .| .+.+....|++||+||+++.++|++++++|++|+++|++
T Consensus 157 ~--~K-n~ig~~~~P~~viiDp~~l~tlP~r~~~sG~ad~ik~~~ 198 (368)
T 3qbe_A 157 A--GK-NLVGAFHQPLAVLVDLATLQTLPRDEMICGMAEVVKAGF 198 (368)
T ss_dssp T--EE-EEEEEECCCSEEEEEGGGGGGSCHHHHHHHHHHHHHHHH
T ss_pred C--Cc-eeeccccCCCEEEEcHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 3 23 344455679999999999999999999999999999987
No 23
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=99.76 E-value=5.4e-20 Score=197.14 Aligned_cols=198 Identities=11% Similarity=0.010 Sum_probs=136.3
Q ss_pred ccccccccccc--CCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcC
Q psy2427 370 RVKKADAVPTT--SGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTAL 447 (660)
Q Consensus 370 ~~~~~i~vPTt--~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~ 447 (660)
...|+|+|||| ++||||++..++++++.. |..+ .....|+.+|+||+++.++|++++++|++|+|.|++|+....
T Consensus 119 rgip~i~IPTTlla~tdS~v~~kt~I~~~~~--Kn~i-g~~~~P~~viiD~~~l~tlP~~~~~aG~~d~lkha~i~d~~~ 195 (368)
T 2gru_A 119 RGIALIHVPTTFLAASDSVLSIKQAVNLTSG--KNLV-GFYYPPRFVFADTRILSESPPRQVKAGMCELVKNMLILENDN 195 (368)
T ss_dssp TCCEEEEEECSHHHHHTTTSSCEEEEEETTE--EEEE-EEECCCSEEEEEHHHHHTSCHHHHHHHHHHHHHHHHHSCCSC
T ss_pred CCCCEEEECCchHhhcCCCcCCeEEEECCCc--eeEe-ecCCCCCEEEEchHHHcCCCHHHHHHHHHHHHHHHHHcCHHH
Confidence 35799999998 699999999999999753 4433 244579999999999999999999999999999999862210
Q ss_pred CCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhH-hhhcccchhhhhhh
Q psy2427 448 PYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGV-GFGNAGVHLCHGLS 526 (660)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as~~ag~-~~~~~g~~~~H~l~ 526 (660)
.+.+ .. ....+.. ...+.+.+.+.+.+.. .+ ..+..+.+.+|+ ++.|.|.+++|+++
T Consensus 196 ----~~~l-----~~----~~~~l~~----~~~~~l~~~i~~~~~~----k~-~~v~~d~~e~G~r~~ln~Ght~~Haie 253 (368)
T 2gru_A 196 ----KEFT-----ED----DLNSANV----YSPKQLETFINFCISA----KM-SVLSEDIYEKKKGLIFEYGHTIGHAIE 253 (368)
T ss_dssp ----CSCC-----GG----GCCTTCC----CCHHHHHHHHHHHHHH----HH-HHHTTCTTSSSGGGGGGTTHHHHHHHH
T ss_pred ----HHHH-----Hh----hHHHHHh----hcHHHHHHHHHHHHHH----HH-HHhccCchhhCchhhhcchhHHHHHHH
Confidence 0000 00 0001100 0011122222222210 00 112233466888 69999999999999
Q ss_pred ccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy2427 527 YPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQ 606 (660)
Q Consensus 527 ~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~~~~~~~~~~~~~l~~l~~~ 606 (660)
|.++ | +++||+++++.+|.++ ++++.+|.. +. ..++++++|+++
T Consensus 254 ~~~~--~-------------~~~HGeavAigm~~~~------------~la~~~g~~----~~-----~~~~~i~~ll~~ 297 (368)
T 2gru_A 254 LAEQ--G-------------GITHGEAIAVGMIYAA------------KIANRMNLM----PE-----HDVSAHYWLLNK 297 (368)
T ss_dssp HHTT--T-------------SSCHHHHHHHHHHHHH------------HHHHHTTSS----CH-----HHHHHHHHHHHH
T ss_pred HccC--C-------------CCChHHHHHHHHHHHH------------HHHHHhCCC----CH-----HHHHHHHHHHHH
Confidence 9886 2 6999999999998765 366667743 11 236899999999
Q ss_pred cCCCCcccccCCCCCcHHHHHHh
Q psy2427 607 MKIENGLKVLGYTSADIPALVTG 629 (660)
Q Consensus 607 lglp~~L~elGi~~~~i~~ia~~ 629 (660)
+|+|+++++ |++++++.+..+.
T Consensus 298 ~glP~~l~~-~i~~~~~~~~~~~ 319 (368)
T 2gru_A 298 IGALQDIPL-KSDPDSIFHYLIH 319 (368)
T ss_dssp TTTTTSCCC-CCCHHHHHHHHHT
T ss_pred cCCCCCCcC-CCCHHHHHHHHHH
Confidence 999999999 9988876555444
No 24
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=99.75 E-value=2.9e-19 Score=190.73 Aligned_cols=217 Identities=17% Similarity=0.146 Sum_probs=139.9
Q ss_pred cccccccccccCCC-CCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHH---HHHh
Q psy2427 370 RVKKADAVPTTSGT-GSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL---ESFT 445 (660)
Q Consensus 370 ~~~~~i~vPTt~~t-gse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~---E~~~ 445 (660)
...|+|+||||+++ +|+++...+++.+.. +.+......|+.+|+||+++.++|++++++|++|+|.|++ |+|+
T Consensus 115 rgip~i~IPTT~~a~ds~vg~K~~i~~~~~---kn~~g~~~~P~~viiDp~~l~tlP~~~~~aG~~d~lkha~i~De~~~ 191 (354)
T 1xah_A 115 RGVHFIQVPTTILAHDSSVGGKVGINSKQG---KNLIGAFYRPTAVIYDLDFLKTLPFKQILSGYAEVYKHALLNGESAT 191 (354)
T ss_dssp TCCEEEEEECSTTHHHHTSSCEEEECCSSS---TTCEEEECCCSEEEEEGGGGGGCCHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred cCCCEEEECCcccccccccCceEEEEcCCc---eeeeecCCCCcEEEEcHHHHhhCCHHHHHHHHHHHHHHHHHcCHHHH
Confidence 46799999999866 588887777776532 2334445789999999999999999999999999999999 8998
Q ss_pred cCCCCCCCCCCCCCCCcccccCCCchH--HHH-HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhHhhhcccchhh
Q psy2427 446 ALPYTERTPCPTDPLLRPAYQGQNPVS--DVW-ARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLC 522 (660)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as~~ag~~~~~~g~~~~ 522 (660)
+. ..++++ +.+ +. +.+.+++++++.++.+..+|..+.. ++.++.|.|
T Consensus 192 ~~-------------------~~~~~~~~~~~~a~---~~l~~~l~~~~~~~~~~~~~d~~e~----g~r~~l~~g---- 241 (354)
T 1xah_A 192 QD-------------------IEQHFKDREILQSL---NGMDKYIAKGIETKLDIVVADEKEQ----GVRKFLNLG---- 241 (354)
T ss_dssp HH-------------------HHHHSCSHHHHHHT---TTHHHHHHHHHHHHHHHHHHSTTSS----SGGGGGGTT----
T ss_pred HH-------------------HHhhhhhhhhhhHH---HHHHHHHHHHHHHHHHHhccCchhh----CCccccccH----
Confidence 84 344555 655 54 6778888888776666655433222 445555555
Q ss_pred hhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Q psy2427 523 HGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRG 602 (660)
Q Consensus 523 H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~~~~~~~~~~~~~l~~ 602 (660)
|.++|.|+ .| ++++||+++|+.+|.+ .++++.+|. .. . .++++++
T Consensus 242 Ht~~Hale-~~------------~~~~HG~avaig~~~~------------~~la~~~g~-~~--~-------~~~~i~~ 286 (354)
T 1xah_A 242 HTFGHAVE-YY------------HKIPHGHAVMVGIIYQ------------FIVANALFD-SK--H-------DISHYIQ 286 (354)
T ss_dssp THHHHHHH-HH------------HCCCHHHHHHHHHHHH------------HHHHHHHTC-CC--C-------CHHHHHH
T ss_pred HHHHHHHh-cC------------CCCCcHHHHHHHHHHH------------HHHHHHhCC-CH--H-------HHHHHHH
Confidence 55555444 32 1599999999999976 356677776 21 1 2588999
Q ss_pred HHHHcCCCCcccc-cCCCCCcHHHHHHhhcc-CCCCCCCCC--------ccCCHHHHHHHHHH
Q psy2427 603 YMDQMKIENGLKV-LGYTSADIPALVTGTLP-QHRITKLAP--------REQSEEDLANLFEN 655 (660)
Q Consensus 603 l~~~lglp~~L~e-lGi~~~~i~~ia~~a~~-~~~~~~~~P--------~~~t~e~i~~il~~ 655 (660)
|++++|+|++|++ ++. ++.++.+...-.. .....-.-| ..++++++.+.++.
T Consensus 287 l~~~~glP~~l~~~l~~-~~~~~~~~~dkk~~~~~~~~~l~~~iG~~~~~~~~~~~l~~~~~~ 348 (354)
T 1xah_A 287 YLIQLGYPLDMITDLDF-ETLYQYMLSDKKNDKQGVQMVLMRQFGDIVVQHVDQLTLQHACEQ 348 (354)
T ss_dssp HHHHHTCCCC------------------------CBCCEEEEETTEEEECCBCHHHHHHHHHH
T ss_pred HHHHcCcCCCCCCCCCH-HHHHHHHHHhHhhcCCCEEEEEEcccCcEEEecCCHHHHHHHHHH
Confidence 9999999999996 543 2334444322111 111000001 13789999888876
No 25
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=99.73 E-value=6.2e-20 Score=198.40 Aligned_cols=192 Identities=16% Similarity=0.098 Sum_probs=133.3
Q ss_pred cccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcch--------------h
Q psy2427 370 RVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGF--------------D 435 (660)
Q Consensus 370 ~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~--------------D 435 (660)
...|+|+||||++|++|. +.++++..+.+.|+.+......|+.+|+||+++.++|++++++|.. |
T Consensus 130 rgip~i~IPTTlla~~da-svg~kt~i~~~~~kn~~g~~~~P~~viiD~~~l~tlP~~~~~sG~aE~iK~~~i~d~~~~~ 208 (393)
T 1sg6_A 130 RGVRYVQVPTTLLAMVDS-SIGGKTAIDTPLGKNLIGAIWQPTKIYIDLEFLETLPVREFINGMAEVIKTAAISSEEEFT 208 (393)
T ss_dssp GCCEEEEEECSHHHHHTT-TSSCEEEEEETTEEEEEEEECCCSEEEEEGGGGGTSCHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCCEEEECCchhhhhhc-CcceEEeecCCCcccccccccCCcEEEEchHHHccCCHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 457999999999999998 5676666555666667777788999999999999999999996663 6
Q ss_pred hHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhHhhh
Q psy2427 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFG 515 (660)
Q Consensus 436 al~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as~~ag~~~~ 515 (660)
+|.|++|+|++. ..+|+++.+ .+++.+.+.++.++.++.+..++. +......+|+ .
T Consensus 209 ~l~~~~e~~~~~-------------------~~~~~~d~~--~a~~~i~~~l~~~i~~~~~~k~~~-v~~d~~e~G~--~ 264 (393)
T 1sg6_A 209 ALEENAETILKA-------------------VRREVTPGE--HRFEGTEEILKARILASARHKAYV-VSADEREGGL--R 264 (393)
T ss_dssp HHHHHHHHHHHH-------------------HHCCCCTTS--CTTGGGHHHHHHHHHHHHHHHHHH-HHC-----CG--G
T ss_pred HHHHhHHHHHhh-------------------ccccccchh--hhHHHHHHHHHHHHHHHHHHHHHH-hCcChhhhcc--h
Confidence 667778888774 233333332 233333444444444333333332 2233444565 2
Q ss_pred cccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCCCHHHHHHH
Q psy2427 516 NAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKL 595 (660)
Q Consensus 516 ~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~~~~~~~~~ 595 (660)
+ +++..|.++|.|+..+ .++++||+++++.++. +.++++.+|... . .
T Consensus 265 ~-~l~~gHt~~Hale~~~-----------~~~~~HGeavAigm~~------------~~~la~~~g~~~----~-----~ 311 (393)
T 1sg6_A 265 N-LLNWGHSIGHAIEAIL-----------TPQILHGECVAIGMVK------------EAELARHLGILK----G-----V 311 (393)
T ss_dssp G-GGGTTHHHHHHHHHHH-----------TTTSCHHHHHHHHHHH------------HHHHHHHTTCSC----H-----H
T ss_pred h-hhChHHHHHHHHHHcC-----------CCCCCcHHHHHHHHHH------------HHHHHHHhCCCC----H-----H
Confidence 3 6778999999999864 1269999999988743 466777887531 1 2
Q ss_pred HHHHHHHHHHHcCCCCcccccCCC
Q psy2427 596 LADTVRGYMDQMKIENGLKVLGYT 619 (660)
Q Consensus 596 ~~~~l~~l~~~lglp~~L~elGi~ 619 (660)
.++++++|++++|+|++|+++|++
T Consensus 312 ~~~~i~~ll~~~glP~~l~~~gi~ 335 (393)
T 1sg6_A 312 AVSRIVKCLAAYGLPTSLKDARIR 335 (393)
T ss_dssp HHHHHHHHHHHTTCCCSTTCHHHH
T ss_pred HHHHHHHHHHHcCCCccchhhccc
Confidence 478999999999999999999873
No 26
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=99.71 E-value=1.1e-17 Score=178.87 Aligned_cols=93 Identities=22% Similarity=0.275 Sum_probs=87.7
Q ss_pred cccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcCCC
Q psy2427 370 RVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPY 449 (660)
Q Consensus 370 ~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~ 449 (660)
+.+|+|+||||++||||+|+.+|+++++. |..+.++.++|+++|+||+++.++|++++++|++|||+||+|+|++.
T Consensus 150 ~~~P~i~IPTTagtgSevt~~avit~~~~--K~~i~~~~~~P~~vi~Dp~l~~tlP~~~~aa~g~Dal~HaiEay~s~-- 225 (375)
T 3rf7_A 150 PAVHHIGIPTVSGTGAEASRTAVLCGPVR--KLGLNSDYTVFDQIIMDSELIAGVPTDQWFYTGMDCFIHCVESLQGT-- 225 (375)
T ss_dssp CCCCEEEEESSCSSCTTTCSCCEEECSSC--EEEEESGGGSCSEEEECGGGGTTCCHHHHHHHHHHHHHHHHHHHHST--
T ss_pred CCCCEEEEcCCCccchhhCCeEEEEeCCC--eEEecccccCCCEEEEcHHHHcCCCHHHHHHHHHHHHHHHHHHHhcc--
Confidence 46799999999999999999999998854 88899999999999999999999999999999999999999999996
Q ss_pred CCCCCCCCCCCCcccccCCCchHHHHHHHHHHHH
Q psy2427 450 TERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 483 (660)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i 483 (660)
..+|++|.+|+++++++
T Consensus 226 -----------------~~~~~sd~~a~~ai~li 242 (375)
T 3rf7_A 226 -----------------YLNEFAKAFAEKSMDLC 242 (375)
T ss_dssp -----------------TCCHHHHHHHHHHHHHH
T ss_pred -----------------CCCHHHHHHHHHHHHHH
Confidence 78999999999999887
No 27
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=99.66 E-value=3.6e-17 Score=173.54 Aligned_cols=190 Identities=14% Similarity=0.109 Sum_probs=118.8
Q ss_pred ccccccccccc--CCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHH---HHH
Q psy2427 370 RVKKADAVPTT--SGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL---ESF 444 (660)
Q Consensus 370 ~~~~~i~vPTt--~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~---E~~ 444 (660)
...|+|+|||| ++++|.++....++.+ +.|..+ .....|+.+|+||+++.++|++++++|++|+|.|++ |.|
T Consensus 110 rgip~i~IPTTlla~vDasvg~k~~v~~~--~~Kn~i-g~~~~P~~vi~D~~~l~tlP~~~~~ag~~d~lkh~~i~d~~~ 186 (343)
T 3clh_A 110 RGIDFINIPTTLLAQVDASVGGKTGINTP--YGKNLI-GSFHQPKAVYMDLAFLKTLEKREFQAGVAEIIKMAVCFDKNL 186 (343)
T ss_dssp TCCEEEEEECSHHHHHTTSSSCEEEEEET--TEEEEE-EEECCCSEEEECTTSGGGSCHHHHHHHHHHHHHHHHHHCHHH
T ss_pred cCCCEEEeCCchhhccccccCCeEEEECc--cccccc-ccCCCCCEEEEcHHHHhcCCHHHHHhHHHHHHHHHHHcCHHH
Confidence 46799999999 5666777776555554 456655 566789999999999999999999999999999999 777
Q ss_pred hcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHhHhhhcccchhhh
Q psy2427 445 TALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAV-YNQDDLEARSHMHLASAMAGVGFGNAGVHLCH 523 (660)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~-~~~~~~~ar~~~~~as~~ag~~~~~~g~~~~H 523 (660)
++.. ..+++++. +++.++...+.....+ .|+.+..+|..+ | ..|
T Consensus 187 ~~~l------------------~~~~~~~~-~~~~i~~~~~~k~~vv~~d~~e~g~r~~l------------n----~gH 231 (343)
T 3clh_A 187 VERL------------------ETKDLKDC-LEEVIFQSVNIKAQVVVQDEKEQNIRAGL------------N----YGH 231 (343)
T ss_dssp HHHH------------------HHSCTTTS-HHHHHHHHHHHHHHHC---------CTTT------------T----TTH
T ss_pred HHHH------------------HhCcCCHH-HHHHHHHHHHHHHHHhccCchhhhHHHHH------------h----hHH
Confidence 6631 11123333 4555555555544443 345444444322 2 346
Q ss_pred hhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHH
Q psy2427 524 GLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGY 603 (660)
Q Consensus 524 ~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~~~~~~~~~~~~~l~~l 603 (660)
.++|.|+... .| ++++||+++++.+|.+++ +++.+|.. +. ..++++++|
T Consensus 232 t~~Hale~~~------~~----~~~~HGeavAig~~~~~~------------la~~~g~~----~~-----~~~~~i~~l 280 (343)
T 3clh_A 232 TFGHAIEKET------DY----ERFLHGEAIAIGMRMAND------------LALSLGML----TL-----KEYERIENL 280 (343)
T ss_dssp HHHHHHHHHT------TT----SSCCHHHHHHHHHHHHHH------------HHHHHTSS----CH-----HHHHHHHHH
T ss_pred HHHHHHHhhc------CC----CCCChHHHHHHHHHHHHH------------HHHHhCCC----CH-----HHHHHHHHH
Confidence 6666666541 12 269999999999998763 45666642 11 236899999
Q ss_pred HHHcCCCCcccccCCCCCcHHHHHHhh
Q psy2427 604 MDQMKIENGLKVLGYTSADIPALVTGT 630 (660)
Q Consensus 604 ~~~lglp~~L~elGi~~~~i~~ia~~a 630 (660)
++++|+|++|+++ +.+++.+..+..
T Consensus 281 l~~~glP~~l~~~--~~~~~~~~~~~d 305 (343)
T 3clh_A 281 LKKFDLIFHYKIL--DLQKFYERLFLD 305 (343)
T ss_dssp HHHTTCCCCCC----------------
T ss_pred HHHcCCCCCCCcC--CHHHHHHHHHHh
Confidence 9999999999987 556665555443
No 28
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=99.55 E-value=3.3e-15 Score=159.05 Aligned_cols=100 Identities=23% Similarity=0.384 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCc
Q psy2427 255 VSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPH 334 (660)
Q Consensus 255 ~s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~H 334 (660)
++|.+++++++++.++++++++|++|.++|++|++|++++|++++++|+|+.|+|+|.|++.++ ++|
T Consensus 191 ~td~~a~~ai~~i~~~l~~a~~~~~d~~aR~~m~~as~laG~a~~~~g~g~~Hai~h~lg~~~~-------------i~H 257 (358)
T 3jzd_A 191 VMSLMAEEGIRALAAGIPAVFNDPADLDARSQCLYGAWLCGTVLGGVGMALHHKLCHTLGGSFN-------------LPH 257 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHC-------------CCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHhhcccC-------------Cch
Confidence 5799999999999999999999999999999999999999999999999999999999998764 999
Q ss_pred hhHHHhhHHHHHHhhhcCCchhhhhHhhhhccc
Q psy2427 335 GLSVVMSAPAVFNFTAASSPERHIEAAELLGAD 367 (660)
Q Consensus 335 G~avai~l~~~l~~~~~~~~er~~~la~~lg~~ 367 (660)
|+++|+++|++++|+.+..++|+.++++.+|.+
T Consensus 258 G~~~aillp~v~~~~~~~~~~~~~~~a~~lg~~ 290 (358)
T 3jzd_A 258 AETHTIVLPHALAYNAAAVPEAMARIRRATGAG 290 (358)
T ss_dssp HHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTCT
T ss_pred hHhHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999864
No 29
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=99.55 E-value=4.3e-15 Score=158.42 Aligned_cols=158 Identities=23% Similarity=0.337 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCc
Q psy2427 255 VSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPH 334 (660)
Q Consensus 255 ~s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~H 334 (660)
++|.+++++++++.++++++++|++|.++|++|++|++++|++++++|++..|+|+|.|++.++ ++|
T Consensus 190 ~td~~a~~ai~~i~~~l~~a~~~~~d~~aR~~m~~As~laG~a~~~~g~g~~Hai~h~lg~~~~-------------i~H 256 (364)
T 3iv7_A 190 INAVLAAEGIRALNQGLPKIVANPHSIEGRDEALYGAYLAAVSFASAGSGLHHKICHTLGGTFN-------------LPH 256 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHTSC-------------CCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhHHhhccCchHHHHHHhHhhhccC-------------CcH
Confidence 5799999999999999999999999999999999999999999999999999999999998753 999
Q ss_pred hhHHHhhHHHHHHhhhcCCchhhhhHhhhhccccc-----cccccccccccCCCCCcccceEEEeeCCCCceeeeeccCC
Q psy2427 335 GLSVVMSAPAVFNFTAASSPERHIEAAELLGADVS-----RVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRAL 409 (660)
Q Consensus 335 G~avai~l~~~l~~~~~~~~er~~~la~~lg~~~~-----~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~ 409 (660)
|+++|+++|++++|+.+..++|+.++++.+|.+.. +....+-+||+.+ |. . ++.+ . .+.+
T Consensus 257 G~~~aillp~v~~~~~~~~~~~~~~~a~~lg~~~~~~~i~~l~~~lglP~~L~---e~---G-i~~~--~------i~~~ 321 (364)
T 3iv7_A 257 AQTHATVLPYVLAFNAGDAPEAERRAAAAFGTDTALEGLQRLRLSVNAPKRLS---DY---G-FEAS--G------IAEA 321 (364)
T ss_dssp HHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTSSSHHHHHHHHHHHTTCCCCGG---GG---T-CCGG--G------HHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhCCchHHHHHHHHHHHcCCCCcHH---Hc---C-CCHH--H------HHHH
Confidence 99999999999999999999999999999887421 2334567787653 11 0 0111 0 0011
Q ss_pred CccccccccccccCCCchhhhhcchhhHHHHHHH
Q psy2427 410 KPTLGLIDPLHTLSLPERVTAYSGFDVFCHALES 443 (660)
Q Consensus 410 ~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~ 443 (660)
.+.+. + ..+.+.|..++..-..+.+-.++++
T Consensus 322 -a~~a~-~-~~~~~np~~~t~~di~~il~~a~~g 352 (364)
T 3iv7_A 322 -VDVTL-E-KVPANNPRPVTRENLSRLLEAALNG 352 (364)
T ss_dssp -HHHHH-T-TSCTTCSSCCCHHHHHHHHHHHHHT
T ss_pred -HHHHH-h-hcccCCCCCCCHHHHHHHHHHHhcC
Confidence 12222 2 3567889988887777777666654
No 30
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=99.52 E-value=7.3e-15 Score=156.16 Aligned_cols=99 Identities=19% Similarity=0.335 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCch
Q psy2427 256 SDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 335 (660)
Q Consensus 256 s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG 335 (660)
+|.+++++++++.++++++++|++|.++|++|++|++++|++++++|++..|+|+|.|++.++ ++||
T Consensus 190 td~~a~~ai~~i~~~l~~a~~~~~d~~aR~~m~~as~laG~a~~~~g~g~~H~i~h~l~~~~~-------------i~HG 256 (353)
T 3hl0_A 190 ASMMAVEGLRAMIEALPVVRQAPHDIGARETALYGAWLCGTVLGAVGMSLHHKLCHTLGGSLD-------------LPHA 256 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHC-------------CCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhccCcHHHHHHhhHhhhccC-------------CCHH
Confidence 478999999999999999999999999999999999999999999999999999999998754 9999
Q ss_pred hHHHhhHHHHHHhhhcCCchhhhhHhhhhccc
Q psy2427 336 LSVVMSAPAVFNFTAASSPERHIEAAELLGAD 367 (660)
Q Consensus 336 ~avai~l~~~l~~~~~~~~er~~~la~~lg~~ 367 (660)
+++|+++|++++|+.+..++|+.++++.+|.+
T Consensus 257 ~~~ai~lp~v~~~~~~~~~~~~~~~a~~lg~~ 288 (353)
T 3hl0_A 257 ETHAVLLPHTIAYVEEAAPNLLAPLAALVGGR 288 (353)
T ss_dssp HHHHHHHHHHHHHHHTTCTTTTHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHcCcH
Confidence 99999999999999999999999999988864
No 31
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=99.48 E-value=2.7e-14 Score=151.60 Aligned_cols=172 Identities=16% Similarity=0.082 Sum_probs=109.5
Q ss_pred cccccccccccC--CCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHH---HH
Q psy2427 370 RVKKADAVPTTS--GTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALE---SF 444 (660)
Q Consensus 370 ~~~~~i~vPTt~--~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E---~~ 444 (660)
...|+|+||||+ .++|.+.....++.+. .|. +......|+.+|+||+++.++|++++++|++|++.|+++ .|
T Consensus 109 rgip~i~IPTTlla~vds~~g~k~~i~~~~--~kn-~ig~~~~P~~vi~D~~~l~tlP~~~~~aG~~d~lkh~~i~d~~~ 185 (348)
T 1ujn_A 109 RGVAYLAFPTTTLAIVDASVGGKTGINLPE--GKN-LVGAFHFPQGVYAELRALKTLPLPTFKEGLVEAFKHGLIAGDEA 185 (348)
T ss_dssp TCCEEEEEECSHHHHHTTTSSCEEEEEETT--EEE-EEEEECCCSEEEEEGGGGGGSCHHHHHHHHHHHHHHHHHHTCGG
T ss_pred cCCCEEEecCcHHHhhccccCceEEEecCC--cce-eeccCcCCCEEEECHHHHhhCCHHHHHhHHHHHHHHHHHcCHHH
Confidence 457999999995 3456666666666652 233 334456799999999999999999999999999999996 45
Q ss_pred h---cCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHH-HHHHhcCCCCHHHHHHHHHHHHHHhHhhhcccch
Q psy2427 445 T---ALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQY-FKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVH 520 (660)
Q Consensus 445 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~-l~~~~~~~~~~~ar~~~~~as~~ag~~~~~~g~~ 520 (660)
+ +.. ..++ +.+ .+.++...+. ......|+.+... ...++
T Consensus 186 ~~~~~~l------------------~~~~--~~l-~~~i~~~~~~k~~~v~~d~~e~g~----------------r~~ln 228 (348)
T 1ujn_A 186 LLKVEDL------------------TPQS--PRL-EAFLARAVAVKVRVTEEDPLEKGK----------------RRLLN 228 (348)
T ss_dssp GGCCTTC------------------CTTC--TTH-HHHHHHHHHHHHHHHHHCTTSSSG----------------GGGGG
T ss_pred hcchHHH------------------HhhH--HHH-HHHHHHHHHHHHHHhhcCchhhch----------------hhHhc
Confidence 5 310 1122 222 2222222221 1222234332211 12233
Q ss_pred hhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH
Q psy2427 521 LCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTV 600 (660)
Q Consensus 521 ~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~~~~~~~~~~~~~l 600 (660)
..|.++|.|...+ .| +++||+++++.++.. .++++.+| +.+ .++++
T Consensus 229 ~GHt~~Hale~~~------~~-----~~~HGeavAig~~~~------------~~la~~~g-~~~----------~~~~i 274 (348)
T 1ujn_A 229 LGHTLGHALEAQT------RH-----ALPHGMAVAYGLLYA------------ALLGRALG-GED----------LLPPV 274 (348)
T ss_dssp TTHHHHHHHHHHT------TT-----CSCHHHHHHHHHHHH------------HHHHHHTT-CCC----------CHHHH
T ss_pred chHHHHHHHHhcc------CC-----CCChHHHHHHHHHHH------------HHHHHHhC-CHH----------HHHHH
Confidence 4566666665531 12 699999999888643 45677777 211 26889
Q ss_pred HHHHHHcCCCCccccc
Q psy2427 601 RGYMDQMKIENGLKVL 616 (660)
Q Consensus 601 ~~l~~~lglp~~L~el 616 (660)
++|++++| |++|+++
T Consensus 275 ~~ll~~~g-P~~l~~~ 289 (348)
T 1ujn_A 275 RRLLLWLS-PPPLPPL 289 (348)
T ss_dssp HHHHHHHC-CCCCCCC
T ss_pred HHHHHHhC-CCCCCcC
Confidence 99999999 9999874
No 32
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=99.48 E-value=1.6e-14 Score=155.44 Aligned_cols=99 Identities=28% Similarity=0.437 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCch
Q psy2427 256 SDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 335 (660)
Q Consensus 256 s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG 335 (660)
+|.+++++++++.++++++++|++|.++|++|++|++++|+++.++|++.+|+|+|.|++.++ ++||
T Consensus 212 td~~a~~ai~~i~~~l~~a~~~~~d~~ar~~m~~as~laG~a~~~~g~g~~Hai~h~l~~~~~-------------i~HG 278 (383)
T 3ox4_A 212 TDACALKAASMIAKNLKTACDNGKDMPAREAMAYAQFLAGMAFNNASLGYVHAMAHQLGGYYN-------------LPHG 278 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHSC-------------CCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhcccchhHHHhhhHHhcCcC-------------CChH
Confidence 478999999999999999999999999999999999999999999999999999999998653 9999
Q ss_pred hHHHhhHHHHHHhhhcCCchhhhhHhhhhccc
Q psy2427 336 LSVVMSAPAVFNFTAASSPERHIEAAELLGAD 367 (660)
Q Consensus 336 ~avai~l~~~l~~~~~~~~er~~~la~~lg~~ 367 (660)
+++|+++|++++|+.+..++|+.++++.+|.+
T Consensus 279 ~~~ai~lp~v~~~~~~~~~~~~~~la~~~g~~ 310 (383)
T 3ox4_A 279 VCNAVLLPHVLAYNASVVAGRLKDVGVAMGLD 310 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999864
No 33
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=99.44 E-value=6.6e-14 Score=152.10 Aligned_cols=76 Identities=25% Similarity=0.422 Sum_probs=72.2
Q ss_pred ccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHH
Q psy2427 369 SRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESF 444 (660)
Q Consensus 369 ~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~ 444 (660)
...+|+|+||||++||||+|+.+|+++++.+.|..+.++.++|+.+|+||+++.++|++++++|++|||+|++|+|
T Consensus 149 ~~~~p~i~IPTTagtgSevt~~avi~~~~~~~K~~~~~~~~~P~~~i~Dp~l~~tlP~~~~aag~~Dal~haiEa~ 224 (408)
T 1oj7_A 149 KSAIPMGCVLTLPATGSESNAGAVISRKTTGDKQAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQY 224 (408)
T ss_dssp CCCCCEEEEESSCSSCGGGSSEEEEEETTTTEEEEEECGGGSCSEEEECGGGGTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCchhHHhCCCEEEEECCCCeEEEeeCCCcCccEEEECchhhcCCCHHHHHhHHHHHHHHHHHHH
Confidence 3568999999999999999999999999889999998888999999999999999999999999999999999965
No 34
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=99.43 E-value=7.1e-14 Score=151.75 Aligned_cols=78 Identities=32% Similarity=0.507 Sum_probs=74.5
Q ss_pred ccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhc
Q psy2427 369 SRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTA 446 (660)
Q Consensus 369 ~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~ 446 (660)
...+|+|+||||++||||+|+.+|+++++.+.|..+.++.++|+.+|+||+++.++|++++++|++|||+|++|+|++
T Consensus 141 ~~~~p~i~IPTTagtgSevt~~avi~~~~~~~K~~i~~~~~~P~~ai~Dp~l~~tlP~~~~aag~~Dal~haiE~~~s 218 (407)
T 1vlj_A 141 EKALPIFDVLTISATGTEMNGNAVITNEKTKEKYGVSSKALYPKVSIIDPSVQFTLPKEQTVYGAVDAISHILEYYFD 218 (407)
T ss_dssp CCCCCEEEEECSCSSCGGGSSEEEEEETTTTEEEEEECGGGSCSEEEECGGGGGGSCHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCEEEEeCCCCcchhhcCeEEEEECCCCeEEEecCCCccceEEEEChHHhcCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 356899999999999999999999999988899999888899999999999999999999999999999999999999
No 35
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=99.41 E-value=1.4e-13 Score=148.43 Aligned_cols=79 Identities=25% Similarity=0.294 Sum_probs=75.1
Q ss_pred ccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcC
Q psy2427 369 SRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTAL 447 (660)
Q Consensus 369 ~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~ 447 (660)
...+|+|+||||++||||+|+.+|+++++.+.|..+.++.++|+.+|+||+++.++|++++++|++|+|+|++|+|++.
T Consensus 130 ~~~~p~i~IPTT~gtgSevt~~avi~~~~~~~K~~i~~~~~~P~~vi~Dp~l~~tlP~~~~aag~~Dal~ha~E~~~s~ 208 (386)
T 1rrm_A 130 KPSVPILAIPTTAGTAAEVTINYVITDEEKRRKFVCVDPHDIPQVAFIDADMMDGMPPALKAATGVDALTHAIEGYITR 208 (386)
T ss_dssp SCCSCEEEEECSSSCCTTTCSEEEEEETTTTEEEEEECGGGCCSEEEECGGGTTTSCHHHHHHHHHHHHHHHHHHHHST
T ss_pred CCCCCEEEEeCCCCchhhhCCcEEEEeCCCCeeEeecCCccccCEEEEChhhhcCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 3467999999999999999999999999888899999889999999999999999999999999999999999999995
No 36
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=99.39 E-value=2e-13 Score=147.29 Aligned_cols=98 Identities=31% Similarity=0.508 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchh
Q psy2427 257 DVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGL 336 (660)
Q Consensus 257 ~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~ 336 (660)
+.+++++++++.++++++++|+.|.++|++|++|++++|+++.|+|++++|+|+|+|++.++ ++||+
T Consensus 217 d~~a~~ai~~i~~~l~~~v~d~~d~~ar~~~~~as~laG~a~~~~g~~~~Hai~h~l~~~~~-------------i~HG~ 283 (387)
T 3bfj_A 217 DAAAMQAIRLIARNLRQAVALGSNLQAREYMAYASLLAGMAFNNANLGYVHAMAHQLGGLYD-------------MPHGV 283 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-------------CCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHccCcHHHHHhhhHHhcCcC-------------CChHH
Confidence 35778999999999999999999999999999999999999999999999999999987643 99999
Q ss_pred HHHhhHHHHHHhhhcCCchhhhhHhhhhccc
Q psy2427 337 SVVMSAPAVFNFTAASSPERHIEAAELLGAD 367 (660)
Q Consensus 337 avai~l~~~l~~~~~~~~er~~~la~~lg~~ 367 (660)
+||++||++++|+.+..++|+.++++.+|..
T Consensus 284 avai~lp~v~~~~~~~~~~~~~~la~~lg~~ 314 (387)
T 3bfj_A 284 ANAVLLPHVARYNLIANPEKFADIAELMGEN 314 (387)
T ss_dssp HHHHHHHHHHHHHGGGCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhCCC
Confidence 9999999999999999999999999988753
No 37
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=99.38 E-value=1.8e-13 Score=147.06 Aligned_cols=76 Identities=13% Similarity=0.103 Sum_probs=71.3
Q ss_pred ccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcC
Q psy2427 371 VKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTAL 447 (660)
Q Consensus 371 ~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~ 447 (660)
.+|+|+||||++||||+|+.+|+++++.+.|..+..+. .|+.+|+||+++.++|++++++|++|||+|++|+|++.
T Consensus 130 ~~p~i~IPTTagtgSevt~~avi~~~~~~~k~~~~~~~-~P~~vi~Dp~l~~tlP~~~~aag~~Dal~ha~Eay~s~ 205 (387)
T 3uhj_A 130 GARIVIAPTIASTDAPCSAIAVRYTEHGVYEEALRLPR-NPDAVVVDSALVAAAPARFLVAGIGDALSTWFEARSNI 205 (387)
T ss_dssp TCEEEECCSSCCCSTTTSSEEEEECTTSCEEEEEECSC-CCSEEEECHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEecCcccCCcccCCeEEEEcCCCceEeeeecCC-CCeEEEEChHHHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999998888888887764 79999999999999999999999999999999999996
No 38
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=99.38 E-value=2.6e-13 Score=145.52 Aligned_cols=92 Identities=34% Similarity=0.491 Sum_probs=85.1
Q ss_pred cccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcCCC
Q psy2427 370 RVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPY 449 (660)
Q Consensus 370 ~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~ 449 (660)
..+|+|+||||+|||||+|+++|++ ++.+.|..+. .++|+.+|+||+++.++|++++++|++|+|+|++|+|++.
T Consensus 139 ~~~p~i~IPTTagtgse~t~~avi~-~~~g~K~~i~--~~~P~~vi~Dp~l~~tlP~~~~aag~~Dal~ha~E~~~s~-- 213 (371)
T 1o2d_A 139 HWLPVVEIPTTAGTGSEVTPYSILT-DPEGNKRGCT--LMFPVYAFLDPRYTYSMSDELTLSTGVDALSHAVEGYLSR-- 213 (371)
T ss_dssp CCCCEEEEECSSCCCGGGCCEEEEE-CTTSCEEEEE--CCCCSEEEECGGGGGGCCHHHHHHHHHHHHHHHHHHHHST--
T ss_pred CCCeEEEEeCCCchhhhhcCceEEE-cCCCeeEeee--cccCCEEEECchhhcCCCHHHHHHHHHHHHHHHHHHHhcC--
Confidence 5689999999999999999999999 6678898888 7889999999999999999999999999999999999996
Q ss_pred CCCCCCCCCCCCcccccCCCchHHHHHHHHHHHH
Q psy2427 450 TERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 483 (660)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i 483 (660)
..+|+++.+|+++++++
T Consensus 214 -----------------~~~~~~d~~a~~a~~li 230 (371)
T 1o2d_A 214 -----------------KSTPPSDALAIEAMKII 230 (371)
T ss_dssp -----------------TCCHHHHHHHHHHHHHH
T ss_pred -----------------CCCHHHHHHHHHHHHHH
Confidence 67899999999877764
No 39
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=99.32 E-value=5e-13 Score=143.62 Aligned_cols=76 Identities=18% Similarity=0.110 Sum_probs=70.8
Q ss_pred ccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcC
Q psy2427 371 VKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTAL 447 (660)
Q Consensus 371 ~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~ 447 (660)
.+|+|+||||++||||+|+.+|+++++.+.|.....+ .+|+.+|+||+++.++|++++++|++|+|+|++|+|++.
T Consensus 118 ~~p~i~IPTTa~tgSevt~~avi~~~~~~~k~~~~~~-~~P~~viiDp~l~~tlP~~~~aag~~Dal~h~~E~~~s~ 193 (376)
T 1kq3_A 118 KKPVVIVPTIASTDAPCSALSVIYTPNGEFKRYLFLP-RNPDVVLVDTEIVAKAPARFLVAGMGDALATWFEAESCK 193 (376)
T ss_dssp TCCEEEEESSCCCSCTTSSEEEEECTTSCEEEEEECS-SCCSEEEEEHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEecCccccCcccCCeEEEEeCCCCeEeeccCC-CCCcEEEEchHHHhhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 4799999999999999999999999887778777765 789999999999999999999999999999999999984
No 40
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=99.31 E-value=6.5e-13 Score=142.48 Aligned_cols=76 Identities=20% Similarity=0.159 Sum_probs=71.2
Q ss_pred ccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcC
Q psy2427 371 VKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTAL 447 (660)
Q Consensus 371 ~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~ 447 (660)
.+|+|+||||++||||+|+.+|+++++.+.|....++ ..|+.+|+||+++.++|++++++|++|+|+|++|+|++.
T Consensus 110 ~~p~i~IPTTa~tgSevt~~avi~~~~~~~k~~~~~~-~~P~~viiDp~ll~tlP~~~~a~g~~Dal~h~~E~~~~~ 185 (370)
T 1jq5_A 110 DAYIVIVPTAASTDAPTSALSVIYSDDGVFESYRFYK-KNPDLVLVDTKIIANAPPRLLASGIADALATWVEARSVI 185 (370)
T ss_dssp TCEEEEEESSCCSSCTTCSEEEEECTTSCEEEEEECS-SCCSEEEEEHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeccccCCCcccCCeEEEEcCCCceEeeccCC-CCCeEEEEChHHHHhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 4799999999999999999999999887778888776 789999999999999999999999999999999999984
No 41
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=99.28 E-value=9.1e-13 Score=144.24 Aligned_cols=76 Identities=18% Similarity=0.114 Sum_probs=67.9
Q ss_pred ccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcC
Q psy2427 371 VKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTAL 447 (660)
Q Consensus 371 ~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~ 447 (660)
.+|+|+||||++||||+|+.+|+++++.+.|....++ ..|+.+|+||+++.++|++++++|++|+|+|++|+|++.
T Consensus 169 giP~I~IPTTAgtgSevt~~avI~~~~~~~k~~~~~~-~~P~~viiDp~ll~tlP~~~~aag~~DaL~h~~E~~~s~ 244 (450)
T 1ta9_A 169 NLPSIICPTTASSDAATSSLSVIYTPDGQFQKYSFYP-LNPNLIFIDTDVIVRAPVRFLISGIGDALSTWVETESVI 244 (450)
T ss_dssp TCCEEEEESSCSCSCTTCSEEEEC----CCCEEEECS-SCCSEEEEEHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCccCcccCCceEEEeCCCceEEecccc-cCCcEEEEchHHHccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 4799999999999999999999999887778887776 789999999999999999999999999999999999985
No 42
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=99.18 E-value=2.2e-11 Score=130.09 Aligned_cols=69 Identities=23% Similarity=0.157 Sum_probs=55.0
Q ss_pred cccccccccccC--CCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHH
Q psy2427 370 RVKKADAVPTTS--GTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL 441 (660)
Q Consensus 370 ~~~~~i~vPTt~--~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~ 441 (660)
...|+|+||||+ .++|++.+...++.+..+...+. ...|+.+|+||+++.++|++++++|++|++.|++
T Consensus 148 rgip~I~IPTTlla~vDssvggkt~I~~~~~Kn~ig~---f~~P~~ViiD~~~l~tlP~r~~~aG~~D~lkha~ 218 (390)
T 3okf_A 148 RGVDFIQIPTTLLSQVDSSVGGKTAVNHPLGKNMIGA---FYQPKAVVIDTDCLTTLPAREFAAGMAEVIKYGI 218 (390)
T ss_dssp TCCEEEEEECSHHHHHHTSSSCEEEEEETTEEEEEEE---ECCCSEEEEEGGGGGGSCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEeCCCCccccccCcCCeEEEEcCCCceEEee---ccCCCEEEEcHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 457999999994 56677777777777643332222 3479999999999999999999999999999988
No 43
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=99.06 E-value=5.1e-11 Score=126.92 Aligned_cols=71 Identities=15% Similarity=0.075 Sum_probs=64.0
Q ss_pred ccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHh
Q psy2427 371 VKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFT 445 (660)
Q Consensus 371 ~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~ 445 (660)
.+|+|+||||++||||+|..+|+++++. |..+ ....|+.+|+||+++.++|++++++|++|+|+|+.|.+-
T Consensus 112 ~~p~i~IPTT~~tgse~t~~avi~~~~~--K~~i--~~~~P~~vi~Dp~ll~tlP~~~~~~g~~Dal~h~~~~~d 182 (354)
T 3ce9_A 112 KLPFISVPTSTSNDGFSSPVASLLINGK--RTSV--PAKTPDGIVVDIDVIKGSPEKFIYSGIGDLVSNITALYD 182 (354)
T ss_dssp TCCEEEEESCCSSGGGTSSEEEEEETTE--EEEE--ECCCCSEEEEEHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEecCcccCCCCCCCceEEEeCCc--eeee--cCCCCcEEEEcHHHHHhCCHHHHHhhHHHHHHHHHHHHH
Confidence 4799999999999999999999998753 5555 468899999999999999999999999999999998763
No 44
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=99.01 E-value=2.6e-09 Score=113.42 Aligned_cols=69 Identities=17% Similarity=0.142 Sum_probs=55.8
Q ss_pred cccccccccccCC--CCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHH
Q psy2427 370 RVKKADAVPTTSG--TGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL 441 (660)
Q Consensus 370 ~~~~~i~vPTt~~--tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~ 441 (660)
...|+|+||||++ ++|.++....++.+ ..|. +......|+.+|+||+++.++|++++++|..|++.|++
T Consensus 128 rgip~i~IPTTlla~vDssvggkt~V~~~--~~Kn-~ig~~~~P~~viiDp~~l~tlP~r~~~sG~ad~ik~~~ 198 (368)
T 3qbe_A 128 RGVSIVHLPTTLLGMVDAAVGGKTGINTD--AGKN-LVGAFHQPLAVLVDLATLQTLPRDEMICGMAEVVKAGF 198 (368)
T ss_dssp GCCEEEEEECSHHHHHTTTSSCEEEEEET--TEEE-EEEEECCCSEEEEEGGGGGGSCHHHHHHHHHHHHHHHH
T ss_pred cCCcEEEECCCCccccccCcCceEEEECC--CCce-eeccccCCCEEEEcHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 3579999999976 78888876555543 2343 44455679999999999999999999999999999876
No 45
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=96.73 E-value=0.0066 Score=56.62 Aligned_cols=98 Identities=14% Similarity=0.155 Sum_probs=73.3
Q ss_pred HHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchh
Q psy2427 40 EVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSV 119 (660)
Q Consensus 40 ~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 119 (660)
+|.+.+... .++.||++.... ....++....|++-|+.+.+ .-...|-+.+.+.+..+.+++.++++||++-|++.
T Consensus 13 ~l~~~~~~~--~~V~IimGS~SD-~~v~~~a~~~L~~~Gi~~dv-~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa 88 (182)
T 1u11_A 13 ALEDKAASA--PVVGIIMGSQSD-WETMRHADALLTELEIPHET-LIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAA 88 (182)
T ss_dssp -------CC--CSEEEEESSGGG-HHHHHHHHHHHHHTTCCEEE-EECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSC
T ss_pred HHHhhhcCC--CEEEEEECcHHH-HHHHHHHHHHHHHcCCCeEE-EEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchh
Confidence 444544443 378888887643 33568889999999999763 55678999999999999999999999999999865
Q ss_pred hhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCC
Q psy2427 120 IDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSG 166 (660)
Q Consensus 120 iD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~g 166 (660)
-+...++.... +|+|.|||..+
T Consensus 89 -~LpgvvA~~t~------------------------~PVIgVP~~~~ 110 (182)
T 1u11_A 89 -HLPGMCAAWTR------------------------LPVLGVPVESR 110 (182)
T ss_dssp -CHHHHHHHHCS------------------------SCEEEEEECCT
T ss_pred -hhHHHHHhccC------------------------CCEEEeeCCCC
Confidence 57777877664 89999999864
No 46
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=96.69 E-value=0.011 Score=54.37 Aligned_cols=88 Identities=19% Similarity=0.288 Sum_probs=71.5
Q ss_pred EEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhc
Q psy2427 52 RVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYC 131 (660)
Q Consensus 52 r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~ 131 (660)
++.||++.... ....++....|++-|+.+.+ .-...|-+.+.+.+.++.+++.++++||++.|++. -+...++....
T Consensus 7 ~V~IimgS~SD-~~v~~~a~~~l~~~gi~~ev-~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa-~LpgvvA~~t~ 83 (166)
T 3oow_A 7 QVGVIMGSKSD-WSTMKECCDILDNLGIGYEC-EVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAA-HLPGMVAAKTT 83 (166)
T ss_dssp EEEEEESSGGG-HHHHHHHHHHHHHTTCEEEE-EECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSC-CHHHHHHHTCS
T ss_pred eEEEEECcHHh-HHHHHHHHHHHHHcCCCEEE-EEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcch-hhHHHHHhccC
Confidence 78888887642 33568899999999998763 45678999999999999999999999999999965 47777776554
Q ss_pred CCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCC
Q psy2427 132 DPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSG 166 (660)
Q Consensus 132 ~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~g 166 (660)
+|+|.|||..+
T Consensus 84 ------------------------~PVIgVP~~~~ 94 (166)
T 3oow_A 84 ------------------------LPVLGVPVKSS 94 (166)
T ss_dssp ------------------------SCEEEEECCCT
T ss_pred ------------------------CCEEEeecCcC
Confidence 89999999764
No 47
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=96.62 E-value=0.0085 Score=54.99 Aligned_cols=89 Identities=16% Similarity=0.207 Sum_probs=72.6
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHh
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYY 130 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~ 130 (660)
.++.||++.... ....++....|++-|+.+.+ .-...|-+.+.+.+..+.+++.++++||++.|++. -+...++...
T Consensus 4 ~~V~Iimgs~SD-~~v~~~a~~~l~~~gi~~ev-~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa-~LpgvvA~~t 80 (163)
T 3ors_A 4 MKVAVIMGSSSD-WKIMQESCNMLDYFEIPYEK-QVVSAHRTPKMMVQFASEARERGINIIIAGAGGAA-HLPGMVASLT 80 (163)
T ss_dssp CCEEEEESCGGG-HHHHHHHHHHHHHTTCCEEE-EECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSC-CHHHHHHHHC
T ss_pred CeEEEEECcHHH-HHHHHHHHHHHHHcCCCEEE-EEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchh-hhHHHHHhcc
Confidence 468888886642 33568888999999999764 55678999999999999999999999999999865 5777777766
Q ss_pred cCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCC
Q psy2427 131 CDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSG 166 (660)
Q Consensus 131 ~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~g 166 (660)
. +|+|.|||..+
T Consensus 81 ~------------------------~PVIgVP~~~~ 92 (163)
T 3ors_A 81 T------------------------LPVIGVPIETK 92 (163)
T ss_dssp S------------------------SCEEEEEECCT
T ss_pred C------------------------CCEEEeeCCCC
Confidence 4 89999999765
No 48
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=96.61 E-value=0.0095 Score=55.20 Aligned_cols=89 Identities=17% Similarity=0.211 Sum_probs=72.7
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHh
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYY 130 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~ 130 (660)
.++.||++.... ....++....|++-|+.+.+ .-...|-+.+.+.+.++.+++.++++||++.|++. -+...+|...
T Consensus 8 ~~V~IimgS~SD-~~v~~~a~~~L~~~gi~~ev-~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa-~LpgvvA~~t 84 (174)
T 3lp6_A 8 PRVGVIMGSDSD-WPVMADAAAALAEFDIPAEV-RVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAA-HLPGMVAAAT 84 (174)
T ss_dssp CSEEEEESCGGG-HHHHHHHHHHHHHTTCCEEE-EECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSC-CHHHHHHHHC
T ss_pred CeEEEEECcHHh-HHHHHHHHHHHHHcCCCEEE-EEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchh-hhHHHHHhcc
Confidence 478888887642 33568899999999998763 45678999999999999999999999999999865 5777777766
Q ss_pred cCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCC
Q psy2427 131 CDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSG 166 (660)
Q Consensus 131 ~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~g 166 (660)
. +|+|.|||..+
T Consensus 85 ~------------------------~PVIgVP~~~~ 96 (174)
T 3lp6_A 85 P------------------------LPVIGVPVPLG 96 (174)
T ss_dssp S------------------------SCEEEEEECCS
T ss_pred C------------------------CCEEEeeCCCC
Confidence 4 89999999764
No 49
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=96.54 E-value=0.012 Score=54.18 Aligned_cols=88 Identities=19% Similarity=0.309 Sum_probs=71.6
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHh
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYY 130 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~ 130 (660)
.++.||++.... ....++....|++-|+.+.+ .-...|-+.+.+.+.++.+++.++++||++.|++. -+...++...
T Consensus 7 ~~V~IimgS~SD-~~v~~~a~~~l~~~gi~~ev-~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa-~LpgvvA~~t 83 (169)
T 3trh_A 7 IFVAILMGSDSD-LSTMETAFTELKSLGIPFEA-HILSAHRTPKETVEFVENADNRGCAVFIAAAGLAA-HLAGTIAAHT 83 (169)
T ss_dssp CEEEEEESCGGG-HHHHHHHHHHHHHTTCCEEE-EECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSC-CHHHHHHHTC
T ss_pred CcEEEEECcHHh-HHHHHHHHHHHHHcCCCEEE-EEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhh-hhHHHHHhcC
Confidence 478888887642 33568899999999998764 45678999999999999999999999999999965 4777777655
Q ss_pred cCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC
Q psy2427 131 CDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS 165 (660)
Q Consensus 131 ~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~ 165 (660)
. +|+|.|||..
T Consensus 84 ~------------------------~PVIgVP~~~ 94 (169)
T 3trh_A 84 L------------------------KPVIGVPMAG 94 (169)
T ss_dssp S------------------------SCEEEEECCC
T ss_pred C------------------------CCEEEeecCC
Confidence 4 8999999974
No 50
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=96.44 E-value=0.012 Score=54.49 Aligned_cols=88 Identities=18% Similarity=0.257 Sum_probs=71.3
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHh
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYY 130 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~ 130 (660)
.++.||++.... ....++....|++-|+.+.+ .-...|-+.+.+.+.++.+++.++++||++.|++. -+...++...
T Consensus 13 ~~V~IimGS~SD-~~v~~~a~~~L~~~Gi~~ev-~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa-~LpgvvA~~t 89 (174)
T 3kuu_A 13 VKIAIVMGSKSD-WATMQFAADVLTTLNVPFHV-EVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAA-HLPGMLAAKT 89 (174)
T ss_dssp CCEEEEESSGGG-HHHHHHHHHHHHHTTCCEEE-EECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSC-CHHHHHHHTC
T ss_pred CcEEEEECcHHH-HHHHHHHHHHHHHcCCCEEE-EEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhh-hhHHHHHhcc
Confidence 368888887642 33558888999999998763 45678999999999999999999999999999865 4777777655
Q ss_pred cCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC
Q psy2427 131 CDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS 165 (660)
Q Consensus 131 ~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~ 165 (660)
. +|+|.|||..
T Consensus 90 ~------------------------~PVIgVP~~~ 100 (174)
T 3kuu_A 90 L------------------------VPVLGVPVQS 100 (174)
T ss_dssp S------------------------SCEEEEEECC
T ss_pred C------------------------CCEEEeeCCC
Confidence 4 8999999974
No 51
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=96.44 E-value=0.014 Score=53.93 Aligned_cols=91 Identities=20% Similarity=0.216 Sum_probs=73.6
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHh
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYY 130 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~ 130 (660)
.++.||.+.... ....++....|++-|+++.+ .-...|-+.+.+.+.++.+++.++++||++=||+. -+...++...
T Consensus 13 P~V~IimGS~SD-~~v~~~a~~~l~~~gi~~ev-~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa-hLpgvvA~~t 89 (173)
T 4grd_A 13 PLVGVLMGSSSD-WDVMKHAVAILQEFGVPYEA-KVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAA-HLPGMLAAKT 89 (173)
T ss_dssp CSEEEEESSGGG-HHHHHHHHHHHHHTTCCEEE-EECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSC-CHHHHHHHHC
T ss_pred CeEEEEeCcHhH-HHHHHHHHHHHHHcCCCEEE-EEEccccCHHHHHHHHHHHHhcCCeEEEEeccccc-cchhhheecC
Confidence 478888887643 23558888999999999764 45678999999999999999999999999988854 5778887766
Q ss_pred cCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcC
Q psy2427 131 CDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTG 168 (660)
Q Consensus 131 ~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtg 168 (660)
. +|+|.||+..+..
T Consensus 90 ~------------------------~PVIgVPv~~~~l 103 (173)
T 4grd_A 90 T------------------------VPVLGVPVASKYL 103 (173)
T ss_dssp C------------------------SCEEEEEECCTTT
T ss_pred C------------------------CCEEEEEcCCCCC
Confidence 4 8999999987553
No 52
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=96.40 E-value=0.017 Score=53.99 Aligned_cols=89 Identities=21% Similarity=0.324 Sum_probs=72.6
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHh
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYY 130 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~ 130 (660)
..+.||++.... ....++....|++-|+++.+ .-...+-+.+.+.+..+.+++.++++||++.|++. -+...+|...
T Consensus 14 ~~V~IimGS~SD-~~v~~~a~~~L~~~Gi~~dv-~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa-~LpgvvA~~t 90 (183)
T 1o4v_A 14 PRVGIIMGSDSD-LPVMKQAAEILEEFGIDYEI-TIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAA-HLPGMVASIT 90 (183)
T ss_dssp CEEEEEESCGGG-HHHHHHHHHHHHHTTCEEEE-EECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSC-CHHHHHHHHC
T ss_pred CeEEEEeccHHH-HHHHHHHHHHHHHcCCCeEE-EEEcccCCHHHHHHHHHHHHhCCCcEEEEecCccc-ccHHHHHhcc
Confidence 578888886643 34568889999999999764 45678999999999999999999999999999865 5778887766
Q ss_pred cCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCC
Q psy2427 131 CDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSG 166 (660)
Q Consensus 131 ~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~g 166 (660)
. +|+|.|||..+
T Consensus 91 ~------------------------~PVIgVP~~~~ 102 (183)
T 1o4v_A 91 H------------------------LPVIGVPVKTS 102 (183)
T ss_dssp S------------------------SCEEEEEECCT
T ss_pred C------------------------CCEEEeeCCCC
Confidence 4 89999999874
No 53
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=96.39 E-value=0.023 Score=52.09 Aligned_cols=88 Identities=14% Similarity=0.205 Sum_probs=71.0
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc-CCCEEEEecCchhhhHHHHHHhH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV-QCDAFIAVGGGSVIDTCKAANLY 129 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~-~~D~IIavGGGsviD~AK~~a~~ 129 (660)
.++.||++.... ....++....|++-|+.+.+ .-...|-+.+.+.+..+.+++. ++++||++-|++. -+...+|..
T Consensus 3 ~~V~Iimgs~SD-~~v~~~a~~~l~~~gi~~ev-~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa-~LpgvvA~~ 79 (159)
T 3rg8_A 3 PLVIILMGSSSD-MGHAEKIASELKTFGIEYAI-RIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSN-ALSGFVDGF 79 (159)
T ss_dssp CEEEEEESSGGG-HHHHHHHHHHHHHTTCEEEE-EECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSC-CHHHHHHHH
T ss_pred CeEEEEECcHHH-HHHHHHHHHHHHHcCCCEEE-EEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchh-hhHHHHHhc
Confidence 368888886642 33568899999999998773 4567899999999999999886 6999999999965 477777776
Q ss_pred hcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC
Q psy2427 130 YCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS 165 (660)
Q Consensus 130 ~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~ 165 (660)
.. +|+|.|||..
T Consensus 80 t~------------------------~PVIgVP~~~ 91 (159)
T 3rg8_A 80 VK------------------------GATIACPPPS 91 (159)
T ss_dssp SS------------------------SCEEECCCCC
T ss_pred cC------------------------CCEEEeeCCC
Confidence 64 8999999974
No 54
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=96.39 E-value=0.012 Score=54.20 Aligned_cols=89 Identities=21% Similarity=0.226 Sum_probs=71.2
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHh
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYY 130 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~ 130 (660)
.++.||++.... ....++....|++-|+++.+ .-...+-+.+.+.+..+.+++.++++||++-|++. -+...++...
T Consensus 12 ~~V~IimGS~SD-~~v~~~a~~~L~~~Gi~~dv-~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa-~LpgvvA~~t 88 (170)
T 1xmp_A 12 SLVGVIMGSTSD-WETMKYACDILDELNIPYEK-KVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAA-HLPGMVAAKT 88 (170)
T ss_dssp CSEEEEESSGGG-HHHHHHHHHHHHHTTCCEEE-EECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSC-CHHHHHHTTC
T ss_pred CcEEEEECcHHH-HHHHHHHHHHHHHcCCCEEE-EEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchh-hhHHHHHhcc
Confidence 467888876542 33568888999999999763 45678999999999999999999999999999864 4777777655
Q ss_pred cCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCC
Q psy2427 131 CDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSG 166 (660)
Q Consensus 131 ~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~g 166 (660)
. +|+|.|||..+
T Consensus 89 ~------------------------~PVIgVP~~~~ 100 (170)
T 1xmp_A 89 N------------------------LPVIGVPVQSK 100 (170)
T ss_dssp C------------------------SCEEEEEECCT
T ss_pred C------------------------CCEEEeeCCCC
Confidence 4 89999999864
No 55
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=95.46 E-value=0.081 Score=49.14 Aligned_cols=88 Identities=22% Similarity=0.228 Sum_probs=70.3
Q ss_pred EEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhc
Q psy2427 52 RVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYC 131 (660)
Q Consensus 52 r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~ 131 (660)
.+-||.+.... ....++..+.|++-|+.+.+ .-+..+-+.+.+.+.++.+++.++++||++=||+. -+...+|....
T Consensus 24 ~V~IimGS~SD-~~v~~~a~~~L~~~gI~~e~-~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aa-hLpGvvAa~T~ 100 (181)
T 4b4k_A 24 LVGVIMGSTSD-WETMKYACDILDELNIPYEK-KVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAA-HLPGMVAAKTN 100 (181)
T ss_dssp SEEEEESSGGG-HHHHHHHHHHHHHTTCCEEE-EECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSC-CHHHHHHTTCC
T ss_pred cEEEEECCHhH-HHHHHHHHHHHHHcCCCeeE-EEEccccChHHHHHHHHHHHhcCceEEEEeccccc-cchhhHHhcCC
Confidence 46677776542 23568889999999999774 45778999999999999999999999999988865 56777776554
Q ss_pred CCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCC
Q psy2427 132 DPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSG 166 (660)
Q Consensus 132 ~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~g 166 (660)
+|+|.||+-.+
T Consensus 101 ------------------------~PVIGVPv~s~ 111 (181)
T 4b4k_A 101 ------------------------LPVIGVPVQSK 111 (181)
T ss_dssp ------------------------SCEEEEECCCT
T ss_pred ------------------------CCEEEEecCCC
Confidence 89999999653
No 56
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=94.96 E-value=0.064 Score=57.15 Aligned_cols=88 Identities=19% Similarity=0.187 Sum_probs=71.1
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCC-CEEEEecCchhhhHHHHHHhH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQC-DAFIAVGGGSVIDTCKAANLY 129 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~-D~IIavGGGsviD~AK~~a~~ 129 (660)
.++.||++.... ....++....|+.-|+.+.+ .-...|-+.+.+.+.++.+++.++ ++||++.|++. -+...+|..
T Consensus 266 ~~V~Ii~gs~SD-~~~~~~a~~~l~~~gi~~~v-~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a-~Lpgvva~~ 342 (425)
T 2h31_A 266 CRVVVLMGSTSD-LGHCEKIKKACGNFGIPCEL-RVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSN-GLGPVMSGN 342 (425)
T ss_dssp CEEEEEESCGGG-HHHHHHHHHHHHHTTCCEEE-EECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSC-CHHHHHHHH
T ss_pred CeEEEEecCccc-HHHHHHHHHHHHHcCCceEE-eeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCccc-chHhHHhcc
Confidence 478888887643 33558888999999998763 456689999999999999999999 69999999854 577777776
Q ss_pred hcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC
Q psy2427 130 YCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS 165 (660)
Q Consensus 130 ~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~ 165 (660)
.. +|+|.|||..
T Consensus 343 t~------------------------~PVIgvP~~~ 354 (425)
T 2h31_A 343 TA------------------------YPVISCPPLT 354 (425)
T ss_dssp CS------------------------SCEEECCCCC
T ss_pred CC------------------------CCEEEeeCcc
Confidence 64 8999999963
No 57
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=94.30 E-value=0.15 Score=53.07 Aligned_cols=75 Identities=15% Similarity=0.159 Sum_probs=52.4
Q ss_pred CCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHHHh
Q psy2427 50 AQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAANL 128 (660)
Q Consensus 50 ~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~a~ 128 (660)
.+|++||..+..-.....+++.+.|++.|+++.++... .+. ...++++.+...++|.||++|| |++..++..+..
T Consensus 29 ~~~~~vi~Np~sg~~~~~~~i~~~l~~~g~~~~~~~t~--~~~--~~~~~~~~~~~~~~d~vvv~GGDGTl~~v~~~l~~ 104 (332)
T 2bon_A 29 FPASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTW--EKG--DAARYVEEARKFGVATVIAGGGDGTINEVSTALIQ 104 (332)
T ss_dssp -CCEEEEECSSSTTCHHHHHHHHHHHTTTCCEEEEECC--STT--HHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCCchHHHHHHHHHHcCCcEEEEEec--Ccc--hHHHHHHHHHhcCCCEEEEEccchHHHHHHHHHhh
Confidence 37899999876543234578999999999988765421 122 2334444454567999999999 999998888753
No 58
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=93.79 E-value=0.17 Score=46.11 Aligned_cols=81 Identities=25% Similarity=0.408 Sum_probs=61.8
Q ss_pred EEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcC
Q psy2427 53 VCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCD 132 (660)
Q Consensus 53 ~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~ 132 (660)
+.||++... +....++....|++-|+++.+ .-...|-+.+.+.+..+.+++ ++||++-|++. -+...++....
T Consensus 2 V~Iimgs~S-D~~v~~~a~~~l~~~gi~~dv-~V~saHR~p~~~~~~~~~a~~---~ViIa~AG~aa-~Lpgvva~~t~- 74 (157)
T 2ywx_A 2 ICIIMGSES-DLKIAEKAVNILKEFGVEFEV-RVASAHRTPELVEEIVKNSKA---DVFIAIAGLAA-HLPGVVASLTT- 74 (157)
T ss_dssp EEEEESSGG-GHHHHHHHHHHHHHTTCCEEE-EECCTTTCHHHHHHHHHHCCC---SEEEEEEESSC-CHHHHHHTTCS-
T ss_pred EEEEEccHH-HHHHHHHHHHHHHHcCCCeEE-EEEcccCCHHHHHHHHHhcCC---CEEEEEcCchh-hhHHHHHhccC-
Confidence 567777654 233568888999999998763 456679999999888887665 99999998864 47777766554
Q ss_pred CCcchhhhhcCCCCCCCCCCCCCCcEEEEcC
Q psy2427 133 PEAEFLDYVNAPIGKGKPVTVPLKPLIAIPT 163 (660)
Q Consensus 133 ~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPT 163 (660)
+|+|.|||
T Consensus 75 -----------------------~PVIgVP~ 82 (157)
T 2ywx_A 75 -----------------------KPVIAVPV 82 (157)
T ss_dssp -----------------------SCEEEEEE
T ss_pred -----------------------CCEEEecC
Confidence 89999999
No 59
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=92.70 E-value=0.29 Score=50.82 Aligned_cols=73 Identities=16% Similarity=0.242 Sum_probs=50.9
Q ss_pred CCEEEEEECccccc---cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHH
Q psy2427 50 AQRVCVMTDPHLSK---LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKA 125 (660)
Q Consensus 50 ~~r~liVtd~~~~~---~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~ 125 (660)
.+|++||..+..-. ....+++.+.|++.|+++.++..- .+. ...++++.+...++|.||++|| |++..++..
T Consensus 24 m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~--~~~--~a~~~~~~~~~~~~d~vvv~GGDGTv~~v~~~ 99 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATE--KIG--DATLEAERAMHENYDVLIAAGGDGTLNEVVNG 99 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECC--STT--HHHHHHHHHTTTTCSEEEEEECHHHHHHHHHH
T ss_pred cceEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEec--Ccc--hHHHHHHHHhhcCCCEEEEEcCchHHHHHHHH
Confidence 46899999876532 124578999999999988765321 111 3334455555567899999999 888888777
Q ss_pred H
Q psy2427 126 A 126 (660)
Q Consensus 126 ~ 126 (660)
+
T Consensus 100 l 100 (337)
T 2qv7_A 100 I 100 (337)
T ss_dssp H
T ss_pred H
Confidence 6
No 60
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=92.23 E-value=0.52 Score=48.30 Aligned_cols=78 Identities=10% Similarity=0.184 Sum_probs=44.3
Q ss_pred CEEEEEECccccc-cchHHHHHHHHHhCCCeEEEEeCcccCC---CH-H--------HHHHHHH-HhHhcCCCEEEEecC
Q psy2427 51 QRVCVMTDPHLSK-LAPVKATLDSLTRHGVKFELFDKVRVEP---TG-D--------SFLEATK-FVRSVQCDAFIAVGG 116 (660)
Q Consensus 51 ~r~liVtd~~~~~-~~~~~~i~~~L~~~gi~~~~~~~~~~~p---~~-~--------~v~~~~~-~~~~~~~D~IIavGG 116 (660)
+|++||..+...+ ....+++.+.|++.|+++.+........ .. . .+....+ .....++|+||++||
T Consensus 5 ~ki~iI~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~~GG 84 (307)
T 1u0t_A 5 RSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVLGG 84 (307)
T ss_dssp CEEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCEEEEEC
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCCCEEEEEeC
Confidence 7899999876433 2356889999999999887653322110 00 0 0111111 123457899999999
Q ss_pred -chhhhHHHHHHh
Q psy2427 117 -GSVIDTCKAANL 128 (660)
Q Consensus 117 -GsviD~AK~~a~ 128 (660)
|+++-+++.++.
T Consensus 85 DGT~l~a~~~~~~ 97 (307)
T 1u0t_A 85 DGTFLRAAELARN 97 (307)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcc
Confidence 888888887653
No 61
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=91.97 E-value=0.19 Score=50.73 Aligned_cols=54 Identities=9% Similarity=0.236 Sum_probs=40.2
Q ss_pred EEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHHH
Q psy2427 52 RVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAAN 127 (660)
Q Consensus 52 r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~a 127 (660)
|+.||..+.-......+++.+.|++.|+++. ..++|+||++|| |+++.+++.++
T Consensus 2 ki~ii~n~~~~~~~~~~~l~~~l~~~g~~v~----------------------~~~~D~vv~lGGDGT~l~aa~~~~ 56 (272)
T 2i2c_A 2 KYMITSKGDEKSDLLRLNMIAGFGEYDMEYD----------------------DVEPEIVISIGGDGTFLSAFHQYE 56 (272)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHTTSSCEEC----------------------SSSCSEEEEEESHHHHHHHHHHTG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCCEeC----------------------CCCCCEEEEEcCcHHHHHHHHHHh
Confidence 5777777543223355788889999988761 357899999998 88988888764
No 62
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=91.75 E-value=0.054 Score=55.28 Aligned_cols=78 Identities=15% Similarity=0.193 Sum_probs=44.4
Q ss_pred CCEEEEEECccccc-cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHHH
Q psy2427 50 AQRVCVMTDPHLSK-LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAAN 127 (660)
Q Consensus 50 ~~r~liVtd~~~~~-~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~a 127 (660)
.+|++||+.+.-.+ ....+++.+.|++.|+++.++......-...............++|+||++|| |+++-+++.++
T Consensus 5 mkki~ii~np~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~GGDGT~l~a~~~~~ 84 (292)
T 2an1_A 5 FKCIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIGQQADLAVVVGGDGNMLGAARTLA 84 (292)
T ss_dssp CCEEEEECC-------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHHHHHCSEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcccccccccchhhcccCCCEEEEEcCcHHHHHHHHHhh
Confidence 47899998865322 23568899999999998876532110000000000001112346899999999 78888887763
No 63
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=91.51 E-value=0.5 Score=48.30 Aligned_cols=74 Identities=15% Similarity=0.244 Sum_probs=48.8
Q ss_pred cCCCEEEEEECcccccc---chHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHH
Q psy2427 48 MKAQRVCVMTDPHLSKL---APVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTC 123 (660)
Q Consensus 48 ~g~~r~liVtd~~~~~~---~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~A 123 (660)
...+|++||.++..-.. ...+++.+.|++.++++.++.-- ......++++.+.+ ++|.||++|| |++..++
T Consensus 6 ~~m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~----~~~~a~~~~~~~~~-~~d~vv~~GGDGTl~~v~ 80 (304)
T 3s40_A 6 TKFEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTK----EQGDATKYCQEFAS-KVDLIIVFGGDGTVFECT 80 (304)
T ss_dssp CSCSSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECC----STTHHHHHHHHHTT-TCSEEEEEECHHHHHHHH
T ss_pred CCCCEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEcc----CcchHHHHHHHhhc-CCCEEEEEccchHHHHHH
Confidence 34579999998864321 24578899999999988766321 12233444444433 8899999999 6666665
Q ss_pred HHH
Q psy2427 124 KAA 126 (660)
Q Consensus 124 K~~ 126 (660)
..+
T Consensus 81 ~~l 83 (304)
T 3s40_A 81 NGL 83 (304)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 64
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=87.79 E-value=2.9 Score=43.49 Aligned_cols=88 Identities=11% Similarity=0.116 Sum_probs=58.4
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc-
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG- 117 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG- 117 (660)
..+.+++.+.|.+|+.+|++.........+.+++.+++.|+++.....+..++...+....++.+++.++|+|+..+.+
T Consensus 129 ~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~d~~~~~~~l~~~~pdaI~~~~~~~ 208 (385)
T 1pea_A 129 APLAAYLIRHYGERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGT 208 (385)
T ss_dssp HHHHHHHHTTTCSEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCTH
T ss_pred HHHHHHHHHccCcEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCcchHHHHHHHHHHCCCCEEEEecccc
Confidence 4577888888889999998754333334466888899999876532222223456677777787777799999997743
Q ss_pred hhhhHHHHH
Q psy2427 118 SVIDTCKAA 126 (660)
Q Consensus 118 sviD~AK~~ 126 (660)
.++-+.|.+
T Consensus 209 ~a~~~~~~~ 217 (385)
T 1pea_A 209 GTAELYRAI 217 (385)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 334444433
No 65
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=84.94 E-value=1 Score=45.39 Aligned_cols=57 Identities=26% Similarity=0.399 Sum_probs=40.2
Q ss_pred EEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHH
Q psy2427 52 RVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAA 126 (660)
Q Consensus 52 r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~ 126 (660)
|+.||+.+.-. .+++.+.|++.|+++.+...... .. .++|+||++|| |+.+.+++.+
T Consensus 31 ki~iv~~~~~~----~~~l~~~L~~~g~~v~~~~~~~~------------~~--~~~DlvIvlGGDGT~L~aa~~~ 88 (278)
T 1z0s_A 31 RAAVVYKTDGH----VKRIEEALKRLEVEVELFNQPSE------------EL--ENFDFIVSVGGDGTILRILQKL 88 (278)
T ss_dssp EEEEEESSSTT----HHHHHHHHHHTTCEEEEESSCCG------------GG--GGSSEEEEEECHHHHHHHHTTC
T ss_pred EEEEEeCCcHH----HHHHHHHHHHCCCEEEEcccccc------------cc--CCCCEEEEECCCHHHHHHHHHh
Confidence 58888875533 48899999999999875432111 01 27899999999 7777776643
No 66
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=84.40 E-value=2.7 Score=43.76 Aligned_cols=99 Identities=8% Similarity=0.053 Sum_probs=53.4
Q ss_pred CceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccC--CCHHHHH
Q psy2427 20 KEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVE--PTGDSFL 97 (660)
Q Consensus 20 ~~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~--p~~~~v~ 97 (660)
..+.|++.|. ....+.++++.+|.+|+.||+| ..+.....+.+.+.+++.|+++......... +...+..
T Consensus 98 ~~~~~~~~p~-------~~~a~~~~~~~~gw~~vaii~d-~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~ 169 (376)
T 3hsy_A 98 HPFVIQMRPD-------LKGALLSLIEYYQWDKFAYLYD-SDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYR 169 (376)
T ss_dssp CTTEEECSCC-------CHHHHHHHHHHTTCCEEEEEEC-STTCSHHHHHHHHHHHHHTCEEEEEECTTCC---------
T ss_pred CCceEEeCcc-------HHHHHHHHHHhcCCCEEEEEEe-CchhHHHHHHHHHHhhhcCCeEEEEEeccccccccchhHH
Confidence 3466676643 2355777788889999999996 4444446688999999989887633222212 2356777
Q ss_pred HHHHHhHhcCCCEEEEecCchhhhHHHHHHh
Q psy2427 98 EATKFVRSVQCDAFIAVGGGSVIDTCKAANL 128 (660)
Q Consensus 98 ~~~~~~~~~~~D~IIavGGGsviD~AK~~a~ 128 (660)
..+..++..++|+||-.|.+ -+++.++..
T Consensus 170 ~~l~~i~~~~~~vii~~~~~--~~~~~~~~q 198 (376)
T 3hsy_A 170 SLFQDLELKKERRVILDCER--DKVNDIVDQ 198 (376)
T ss_dssp -----------CEEEEESCH--HHHHHHHHH
T ss_pred HHHHHHhhCCCeEEEEECCH--HHHHHHHHH
Confidence 88888888899999987665 345555443
No 67
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=83.44 E-value=3.6 Score=42.18 Aligned_cols=89 Identities=11% Similarity=0.014 Sum_probs=58.8
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
..+.+++.+.|.+|+.+|+..........+.+.+.|++.|+++.....+... ..+....++.+++.++|+|+..+.+.
T Consensus 128 ~~~~~~l~~~g~~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~--~~d~~~~~~~l~~~~~d~v~~~~~~~ 205 (368)
T 4eyg_A 128 IIIGDWAAKNGIKKVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLA--NPDFAPFLQRMKDAKPDAMFVFVPAG 205 (368)
T ss_dssp HHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSS--SCCCHHHHHHHHHHCCSEEEEECCTT
T ss_pred HHHHHHHHHcCCCEEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCC--CCcHHHHHHHHHhcCCCEEEEeccch
Confidence 3467778888999999998655443334577888999999886532222211 12334456667778999999976655
Q ss_pred hhhHHHHHHhHhc
Q psy2427 119 VIDTCKAANLYYC 131 (660)
Q Consensus 119 viD~AK~~a~~~~ 131 (660)
++..++.....
T Consensus 206 --~a~~~~~~~~~ 216 (368)
T 4eyg_A 206 --QGGNFMKQFAE 216 (368)
T ss_dssp --CHHHHHHHHHH
T ss_pred --HHHHHHHHHHH
Confidence 66776655544
No 68
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=82.88 E-value=5.8 Score=43.17 Aligned_cols=78 Identities=12% Similarity=0.049 Sum_probs=58.8
Q ss_pred HHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc--CCCEEEEecCc
Q psy2427 40 EVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV--QCDAFIAVGGG 117 (660)
Q Consensus 40 ~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~D~IIavGGG 117 (660)
.+.++++.+|.+++.+|+....+.....+.+++.+++.|+.+.....+...+...+....+..+++. ++++||..|.+
T Consensus 187 ai~~ll~~fgw~~V~li~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~i~~~~~~a~vii~~~~~ 266 (496)
T 3ks9_A 187 AMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDKIYSNAGEKSFDRLLRKLRERLPKARVVVCFCEG 266 (496)
T ss_dssp HHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCHHHHHHHHHHHHTTTTTTCEEEEECCH
T ss_pred HHHHHHHHcCCcEEEEEEeccHHHHHHHHHHHHHHHHcCceEEEEEEECCCCCHHHHHHHHHHHHhccCceEEEEEecCh
Confidence 3666778889999999986665544466889999999999876434444456778888888888875 67788888765
No 69
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=82.73 E-value=6.2 Score=41.25 Aligned_cols=96 Identities=7% Similarity=0.048 Sum_probs=64.7
Q ss_pred ceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHH
Q psy2427 21 EYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEAT 100 (660)
Q Consensus 21 ~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~ 100 (660)
.+.|++.|. .-..+.+++..+|.+++.||+|.. ......+.+.+.+++.|+++.... ..+.....+....+
T Consensus 108 ~~~~~~~p~-------~~~a~~~~~~~~gw~~vaii~d~~-~g~~~~~~~~~~~~~~g~~v~~~~-~~~~~~~~d~~~~l 178 (389)
T 3o21_A 108 QFVIQMRPA-------LKGAILSLLSYYKWEKFVYLYDTE-RGFSVLQAIMEAAVQNNWQVTARS-VGNIKDVQEFRRII 178 (389)
T ss_dssp SSEEECSCC-------SHHHHHHHHHHHTCCEEEEEECST-TCSHHHHHHHHHHHHTTCEEEEEE-CTTCCCTHHHHHHH
T ss_pred ceEEEEccC-------HHHHHHHHHHhCCCCEEEEEEcCc-HHHHHHHHHHHHhhcCCCeEEEEE-ecCCCCcHHHHHHH
Confidence 455665443 234566777788999999999653 333456888999999999876433 22212334688888
Q ss_pred HHhHhcCCCEEEEecCchhhhHHHHHH
Q psy2427 101 KFVRSVQCDAFIAVGGGSVIDTCKAAN 127 (660)
Q Consensus 101 ~~~~~~~~D~IIavGGGsviD~AK~~a 127 (660)
..++..++|+||-.|.+ -+++.++.
T Consensus 179 ~~ik~~~~~vii~~~~~--~~~~~i~~ 203 (389)
T 3o21_A 179 EEMDRRQEKRYLIDCEV--ERINTILE 203 (389)
T ss_dssp HHHHTTTCCEEEEESCH--HHHHHHHH
T ss_pred HHHHhCCCeEEEEECCH--HHHHHHHH
Confidence 99999999999987654 34455443
No 70
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=82.70 E-value=3.2 Score=45.03 Aligned_cols=102 Identities=7% Similarity=0.022 Sum_probs=68.0
Q ss_pred ceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHH
Q psy2427 21 EYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEAT 100 (660)
Q Consensus 21 ~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~ 100 (660)
++-|++.|+.-.. ...+.++++.+|.+++.+|++...+.....+.+++.+++.|+.+.....+.......+....+
T Consensus 160 p~~fr~~psd~~~----~~a~~~ll~~fgw~~V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l 235 (479)
T 3sm9_A 160 DYFARTVPPDFYQ----AKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRSNIRKSYDSVI 235 (479)
T ss_dssp TTEEESSCCTHHH----HHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECC--CHHHHHHHH
T ss_pred CCeEEeCCcHHHH----HHHHHHHHHHCCCeEEEEEEecchhhHHHHHHHHHHHHHCCceEEEEEEcCCCCChHHHHHHH
Confidence 4556655432211 223667778889999999987665554566889999999999876544455455566777767
Q ss_pred -HHhHhcCCCEEEEecCchhhhHHHHHHh
Q psy2427 101 -KFVRSVQCDAFIAVGGGSVIDTCKAANL 128 (660)
Q Consensus 101 -~~~~~~~~D~IIavGGGsviD~AK~~a~ 128 (660)
+.+++.++|+||..|.+. |+..++..
T Consensus 236 ~~~i~~s~a~vIi~~~~~~--~~~~l~~~ 262 (479)
T 3sm9_A 236 RELLQKPNARVVVLFMRSD--DSRELIAA 262 (479)
T ss_dssp HHHHTCTTCCEEEEECCHH--HHHHHHHH
T ss_pred HHHHhcCCCeEEEEEcChH--HHHHHHHH
Confidence 667778999999998653 45555443
No 71
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=82.07 E-value=4.4 Score=38.38 Aligned_cols=80 Identities=16% Similarity=0.135 Sum_probs=54.5
Q ss_pred cChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEe
Q psy2427 35 PGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAV 114 (660)
Q Consensus 35 ~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIav 114 (660)
-|.+..|.. +++++ +|+-+|+-++... ..+.+.+.| ++++..+. --+.+++++.++.+++.++|+||
T Consensus 81 ~Dil~al~~-a~~~~-~kIavvg~~~~~~--~~~~~~~ll---~~~i~~~~----~~~~~e~~~~i~~l~~~G~~vvV-- 147 (196)
T 2q5c_A 81 FDTMRAVYN-AKRFG-NELALIAYKHSIV--DKHEIEAML---GVKIKEFL----FSSEDEITTLISKVKTENIKIVV-- 147 (196)
T ss_dssp HHHHHHHHH-HGGGC-SEEEEEEESSCSS--CHHHHHHHH---TCEEEEEE----ECSGGGHHHHHHHHHHTTCCEEE--
T ss_pred hHHHHHHHH-HHhhC-CcEEEEeCcchhh--HHHHHHHHh---CCceEEEE----eCCHHHHHHHHHHHHHCCCeEEE--
Confidence 333433333 35566 6888888777543 236777777 55555442 24567788899999999999976
Q ss_pred cCchhhhHHHHHH
Q psy2427 115 GGGSVIDTCKAAN 127 (660)
Q Consensus 115 GGGsviD~AK~~a 127 (660)
||+.+.++|+-..
T Consensus 148 G~~~~~~~A~~~G 160 (196)
T 2q5c_A 148 SGKTVTDEAIKQG 160 (196)
T ss_dssp ECHHHHHHHHHTT
T ss_pred CCHHHHHHHHHcC
Confidence 5999999887543
No 72
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=82.04 E-value=4.4 Score=41.24 Aligned_cols=88 Identities=8% Similarity=-0.053 Sum_probs=56.0
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCccc-CCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRV-EPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~-~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
..+.+++.+.|.+|+.+|++.........+.+++.|++.|+++.....+.. ..+ ....+..+++.++|+|+..+.+
T Consensus 124 ~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~---~~~~~~~l~~~~~dav~~~~~~ 200 (362)
T 3snr_A 124 KVLYEHMKKNNVKTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARPDTS---VAGQALKLVAANPDAILVGASG 200 (362)
T ss_dssp HHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSC---CHHHHHHHHHHCCSEEEEECCH
T ss_pred HHHHHHHHhcCCCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCCCCC---HHHHHHHHHhcCCCEEEEecCc
Confidence 446677888899999999765544444557788999999998642222221 222 3334555666789999987633
Q ss_pred hhhhHHHHHHhHhc
Q psy2427 118 SVIDTCKAANLYYC 131 (660)
Q Consensus 118 sviD~AK~~a~~~~ 131 (660)
.++..++.....
T Consensus 201 --~~a~~~~~~~~~ 212 (362)
T 3snr_A 201 --TAAALPQTTLRE 212 (362)
T ss_dssp --HHHHHHHHHHHH
T ss_pred --chHHHHHHHHHH
Confidence 345555544443
No 73
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=81.08 E-value=5 Score=38.94 Aligned_cols=69 Identities=13% Similarity=0.162 Sum_probs=50.0
Q ss_pred HhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHH
Q psy2427 46 VNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKA 125 (660)
Q Consensus 46 ~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~ 125 (660)
++++ +|+-+|+-++... ..+.+.+.| ++++..+. --+.++++..++.+++.++|+|| ||+.+.|+|+-
T Consensus 103 ~~~~-~kIavVg~~~~~~--~~~~i~~ll---~~~i~~~~----~~~~ee~~~~i~~l~~~G~~vVV--G~~~~~~~A~~ 170 (225)
T 2pju_A 103 GKLT-SSIGVVTYQETIP--ALVAFQKTF---NLRLDQRS----YITEEDARGQINELKANGTEAVV--GAGLITDLAEE 170 (225)
T ss_dssp TCTT-SCEEEEEESSCCH--HHHHHHHHH---TCCEEEEE----ESSHHHHHHHHHHHHHTTCCEEE--ESHHHHHHHHH
T ss_pred HhhC-CcEEEEeCchhhh--HHHHHHHHh---CCceEEEE----eCCHHHHHHHHHHHHHCCCCEEE--CCHHHHHHHHH
Confidence 4455 6888888776532 236677777 55555443 35688999999999999999976 59999998875
Q ss_pred H
Q psy2427 126 A 126 (660)
Q Consensus 126 ~ 126 (660)
.
T Consensus 171 ~ 171 (225)
T 2pju_A 171 A 171 (225)
T ss_dssp T
T ss_pred c
Confidence 4
No 74
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=81.03 E-value=5.6 Score=40.82 Aligned_cols=88 Identities=17% Similarity=0.050 Sum_probs=57.4
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcc-cCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR-VEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~-~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
..+.+++.+.|.+|+.+|++.........+.+++.|++.|+++.....+. ... +....++.+++.++|.|+..+.+
T Consensus 140 ~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~---d~~~~~~~l~~~~~dai~~~~~~ 216 (375)
T 4evq_A 140 RATGDAMIKAGLKKAVTVTWKYAAGEEMVSGFKKSFTAGKGEVVKDITIAFPDV---EFQSALAEIASLKPDCVYAFFSG 216 (375)
T ss_dssp HHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCC---CCHHHHHHHHHHCCSEEEEECCT
T ss_pred HHHHHHHHHcCCcEEEEEecCchHHHHHHHHHHHHHHHcCCeEEEEEecCCCCc---cHHHHHHHHHhcCCCEEEEecCc
Confidence 34667788889999999986554443455778899999999864222221 122 23345666667789999997665
Q ss_pred hhhhHHHHHHhHhc
Q psy2427 118 SVIDTCKAANLYYC 131 (660)
Q Consensus 118 sviD~AK~~a~~~~ 131 (660)
.++..++.....
T Consensus 217 --~~a~~~~~~~~~ 228 (375)
T 4evq_A 217 --GGALKFIKDYAA 228 (375)
T ss_dssp --HHHHHHHHHHHH
T ss_pred --chHHHHHHHHHH
Confidence 356666554443
No 75
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=80.35 E-value=13 Score=31.71 Aligned_cols=66 Identities=9% Similarity=0.102 Sum_probs=45.9
Q ss_pred CCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhH
Q psy2427 50 AQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLY 129 (660)
Q Consensus 50 ~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~ 129 (660)
..|++||.|.... .+.+...|++.|+.+..+.. ..++.+.+++..+|+|| +.+...+++.+.+...
T Consensus 18 ~~~ilivdd~~~~----~~~l~~~L~~~g~~v~~~~~---------~~~al~~l~~~~~dlvi-~~~~~g~~~~~~l~~~ 83 (137)
T 2pln_A 18 SMRVLLIEKNSVL----GGEIEKGLNVKGFMADVTES---------LEDGEYLMDIRNYDLVM-VSDKNALSFVSRIKEK 83 (137)
T ss_dssp CSEEEEECSCHHH----HHHHHHHHHHTTCEEEEESC---------HHHHHHHHHHSCCSEEE-ECSTTHHHHHHHHHHH
T ss_pred CCeEEEEeCCHHH----HHHHHHHHHHcCcEEEEeCC---------HHHHHHHHHcCCCCEEE-EcCccHHHHHHHHHhc
Confidence 3688888776542 25577778777887664432 34555666777899999 8888888888777544
No 76
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=79.81 E-value=8.6 Score=42.34 Aligned_cols=86 Identities=7% Similarity=-0.040 Sum_probs=61.1
Q ss_pred HHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh-cCCCEEEEecCch
Q psy2427 40 EVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS-VQCDAFIAVGGGS 118 (660)
Q Consensus 40 ~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~D~IIavGGGs 118 (660)
.+.++++.+|-+++.+|++...+.....+.+.+.+++.|+.+.....+.......+....+..++. .++|+||..|.+.
T Consensus 176 a~~~ll~~fgw~~V~ii~~d~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~~s~a~vIi~~~~~~ 255 (555)
T 2e4u_A 176 AMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFMRSD 255 (555)
T ss_dssp HHHHHHHHTTCCEEEEEEESSTTHHHHHHHHHHHHHTTTCEEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEEECCHH
T ss_pred HHHHHHHHcCCeEEEEEEeeChHHHHHHHHHHHHHHHCCccEEEEEEeCCCCChHHHHHHHHHHhccCCCCEEEEEcCHH
Confidence 356677778889998888766544445688899999999987643444444567778888888854 6899999987654
Q ss_pred hhhHHHHHH
Q psy2427 119 VIDTCKAAN 127 (660)
Q Consensus 119 viD~AK~~a 127 (660)
|+..++.
T Consensus 256 --~~~~~~~ 262 (555)
T 2e4u_A 256 --DSRELIA 262 (555)
T ss_dssp --HHHHHHH
T ss_pred --HHHHHHH
Confidence 5555543
No 77
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=78.42 E-value=5 Score=41.74 Aligned_cols=98 Identities=7% Similarity=0.053 Sum_probs=68.2
Q ss_pred ceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHH
Q psy2427 21 EYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEAT 100 (660)
Q Consensus 21 ~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~ 100 (660)
.+.|++.|. ....+.+++..+|.+|+.+|++. -......+.+.+.+++.|+++.... . ...+..+....+
T Consensus 106 ~~~~~~~p~-------~~~a~~~~~~~~g~~~v~ii~d~-~~g~~~~~~~~~~~~~~g~~v~~~~-~-~~~~~~d~~~~l 175 (384)
T 3saj_A 106 QFVLQLRPE-------LQEALISIIDHYKWQTFVYIYDA-DRGLSVLQRVLDTAAEKNWQVTAVN-I-LTTTEEGYRMLF 175 (384)
T ss_dssp TTEEECSCC-------CHHHHHHHHHHTTCCEEEEEECS-TTCSHHHHHHHHHHHHHTCEEEEEE-G-GGCCHHHHHHTT
T ss_pred CceEEeccc-------HHHHHHHHHHHCCCcEEEEEEeC-chhHHHHHHHHHHhhhcCceEEEEE-e-ccCCchhHHHHH
Confidence 455565543 23557777888899999999965 3444466888999999998876432 2 234566788888
Q ss_pred HHhHhcCCCEEEEecCchhhhHHHHHHhHh
Q psy2427 101 KFVRSVQCDAFIAVGGGSVIDTCKAANLYY 130 (660)
Q Consensus 101 ~~~~~~~~D~IIavGGGsviD~AK~~a~~~ 130 (660)
..++..++|+||..|-+ -|++.++....
T Consensus 176 ~~ik~~~~~vii~~~~~--~~~~~~~~qa~ 203 (384)
T 3saj_A 176 QDLEKKKERLVVVDCES--ERLNAILGQIV 203 (384)
T ss_dssp TTCCSCSEEEEEEECCG--GGHHHHHHHHH
T ss_pred HHHhccCCcEEEEEcCH--HHHHHHHHHHH
Confidence 88888899999988765 35666554433
No 78
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=78.32 E-value=6.2 Score=40.19 Aligned_cols=88 Identities=11% Similarity=-0.022 Sum_probs=55.7
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
..+.+++.+.|.+|+.+|+..........+.+++.|++.|+++.....+.. ...+....++.+++.++|.|+..+.+
T Consensus 128 ~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~--~~~~~~~~~~~l~~~~~d~i~~~~~~- 204 (358)
T 3hut_A 128 PNNAAWMIGDGFTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPP--GNRRFDDVIDEIEDEAPQAIYLAMAY- 204 (358)
T ss_dssp HHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECT--TCCCCHHHHHHHHHHCCSEEEEESCH-
T ss_pred HHHHHHHHHcCCCEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCC--CCccHHHHHHHHHhcCCCEEEEccCc-
Confidence 446777777799999999855544334557788899999998653222221 11223345666667789999998765
Q ss_pred hhhHHHHHHhHh
Q psy2427 119 VIDTCKAANLYY 130 (660)
Q Consensus 119 viD~AK~~a~~~ 130 (660)
-++..++....
T Consensus 205 -~~a~~~~~~~~ 215 (358)
T 3hut_A 205 -EDAAPFLRALR 215 (358)
T ss_dssp -HHHHHHHHHHH
T ss_pred -hHHHHHHHHHH
Confidence 24444444433
No 79
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=78.14 E-value=7.6 Score=40.15 Aligned_cols=88 Identities=10% Similarity=-0.048 Sum_probs=58.9
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhC--CCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRH--GVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG 116 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~--gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG 116 (660)
..+.+++.++|.+|+.+|+....+.....+.+.+.|++. |+++.....+... ..+....+..+++.++|+|+..+.
T Consensus 131 ~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~~~~l~~~~~g~~vv~~~~~~~~--~~d~~~~~~~i~~~~~d~v~~~~~ 208 (387)
T 3i45_A 131 AMLAAEAAKLPITRWATIAPNYEYGQSAVARFKELLLAARPEVTFVAEQWPALY--KLDAGPTVQALQQAEPEGLFNVLF 208 (387)
T ss_dssp HHHHHHHTTSSCCEEEEECCSSHHHHHHHHHHHHHHHHHCTTCEEEEEECCCTT--CCCHHHHHHHHHHTCCSEEEECCC
T ss_pred HHHHHHHHHcCCCeEEEEeCCchHhHHHHHHHHHHHHHhCCCcEEEeeecCCCC--CcCHHHHHHHHHhCCCCEEEEcCc
Confidence 346677888888999999976655444567788889888 7776532222222 224555667778889999998866
Q ss_pred chhhhHHHHHHhHh
Q psy2427 117 GSVIDTCKAANLYY 130 (660)
Q Consensus 117 GsviD~AK~~a~~~ 130 (660)
+. |++.++....
T Consensus 209 ~~--~~~~~~~~~~ 220 (387)
T 3i45_A 209 GA--DLPKFVREGR 220 (387)
T ss_dssp TT--HHHHHHHHHH
T ss_pred cH--HHHHHHHHHH
Confidence 54 5666654443
No 80
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=77.66 E-value=4.3 Score=41.66 Aligned_cols=89 Identities=9% Similarity=0.081 Sum_probs=58.4
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
..+.+++.++|.+|+.+|++.........+.+++.+++.|+++.....+. +...+....+..++..++|+|+..+.+
T Consensus 130 ~~~~~~l~~~g~~~iaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~--~~~~d~~~~~~~l~~~~~d~v~~~~~~- 206 (364)
T 3lop_A 130 DKMITALVTIGVTRIGVLYQEDALGKEAITGVERTLKAHALAITAMASYP--RNTANVGPAVDKLLAADVQAIFLGATA- 206 (364)
T ss_dssp HHHHHHHHHTTCCCEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEEC--TTSCCCHHHHHHHHHSCCSEEEEESCH-
T ss_pred HHHHHHHHHcCCceEEEEEeCchhhHHHHHHHHHHHHHcCCcEEEEEEec--CCCccHHHHHHHHHhCCCCEEEEecCc-
Confidence 44677788889999999987654444455778899999988754221221 112234455667777899999997654
Q ss_pred hhhHHHHHHhHhc
Q psy2427 119 VIDTCKAANLYYC 131 (660)
Q Consensus 119 viD~AK~~a~~~~ 131 (660)
.+++.++.....
T Consensus 207 -~~a~~~~~~~~~ 218 (364)
T 3lop_A 207 -EPAAQFVRQYRA 218 (364)
T ss_dssp -HHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHH
Confidence 356666655443
No 81
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=76.17 E-value=10 Score=37.08 Aligned_cols=74 Identities=8% Similarity=0.057 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCccc-------CCCHHHHHHHHHH-h-HhcCC
Q psy2427 38 TREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRV-------EPTGDSFLEATKF-V-RSVQC 108 (660)
Q Consensus 38 ~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~-------~p~~~~v~~~~~~-~-~~~~~ 108 (660)
...+.+.++.+|.+|+-|++- .... .-+.+.+.|++.|+++......+. .-+.+.+.++++. + ...++
T Consensus 105 ~~A~~~al~~~g~~rvglltp-y~~~--~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a 181 (240)
T 3ixl_A 105 STAVLNGLRALGVRRVALATA-YIDD--VNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDS 181 (240)
T ss_dssp HHHHHHHHHHTTCSEEEEEES-SCHH--HHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTC
T ss_pred HHHHHHHHHHhCCCEEEEEeC-ChHH--HHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCC
Confidence 344556677889999999985 3222 236788899999999876554321 2356678888877 6 66789
Q ss_pred CEEEEe
Q psy2427 109 DAFIAV 114 (660)
Q Consensus 109 D~IIav 114 (660)
|.||--
T Consensus 182 daivL~ 187 (240)
T 3ixl_A 182 DGILLS 187 (240)
T ss_dssp SEEEEE
T ss_pred CEEEEe
Confidence 976643
No 82
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=75.91 E-value=8.3 Score=39.62 Aligned_cols=88 Identities=17% Similarity=0.057 Sum_probs=57.1
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
..+.+++.+.|.+|+.+|++...+.....+.+.+.+++.|+++.....+... ..+....+..+++.++|+|+..+.+
T Consensus 129 ~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~--~~d~~~~l~~i~~~~~d~v~~~~~~- 205 (375)
T 3i09_A 129 KGTGSAVVKQGGKTWFFLTADYAFGKALEKNTADVVKANGGKVLGEVRHPLS--ASDFSSFLLQAQSSKAQILGLANAG- 205 (375)
T ss_dssp HHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT--CSCCHHHHHHHHHTCCSEEEEECCH-
T ss_pred HHHHHHHHHcCCceEEEEecccHHHHHHHHHHHHHHHHcCCEEeeeeeCCCC--CccHHHHHHHHHhCCCCEEEEecCc-
Confidence 3466777788999999998766544445678889999999887532222211 1233445666777899999887655
Q ss_pred hhhHHHHHHhHh
Q psy2427 119 VIDTCKAANLYY 130 (660)
Q Consensus 119 viD~AK~~a~~~ 130 (660)
-|+..++....
T Consensus 206 -~~~~~~~~~~~ 216 (375)
T 3i09_A 206 -GDTVNAIKAAK 216 (375)
T ss_dssp -HHHHHHHHHHH
T ss_pred -hhHHHHHHHHH
Confidence 34555554333
No 83
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=75.18 E-value=3.2 Score=43.35 Aligned_cols=77 Identities=25% Similarity=0.261 Sum_probs=46.2
Q ss_pred CCEEEEEECcccccc-chHHHHHHHHHhCCCeEEEEeCcccCCCHHH---HHHHHHHh---------HhcCCCEEEEecC
Q psy2427 50 AQRVCVMTDPHLSKL-APVKATLDSLTRHGVKFELFDKVRVEPTGDS---FLEATKFV---------RSVQCDAFIAVGG 116 (660)
Q Consensus 50 ~~r~liVtd~~~~~~-~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~---v~~~~~~~---------~~~~~D~IIavGG 116 (660)
.++++||+-..-.+. ....++.+.|.+.|+.+.+-..+..+..... ........ ...++|+||.+||
T Consensus 38 ~k~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlvI~lGG 117 (365)
T 3pfn_A 38 PKSVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDFIICLGG 117 (365)
T ss_dssp CCEEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCCTTTCSEEEEESS
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhcccCCCEEEEEcC
Confidence 589999986543222 3458899999999988775433222210000 00000000 1247899999999
Q ss_pred -chhhhHHHHH
Q psy2427 117 -GSVIDTCKAA 126 (660)
Q Consensus 117 -GsviD~AK~~ 126 (660)
|+++-+++.+
T Consensus 118 DGT~L~aa~~~ 128 (365)
T 3pfn_A 118 DGTLLYASSLF 128 (365)
T ss_dssp TTHHHHHHHHC
T ss_pred hHHHHHHHHHh
Confidence 8898888865
No 84
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=75.09 E-value=5.9 Score=40.93 Aligned_cols=73 Identities=10% Similarity=0.033 Sum_probs=52.8
Q ss_pred HHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEec
Q psy2427 41 VGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVG 115 (660)
Q Consensus 41 l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavG 115 (660)
+..++...|.+|+.+|+....+.....+.+.+.+++.|.++.....+... ..+....+..+++.++|+|+.+.
T Consensus 130 ~~~~~~~~g~k~vaii~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~--~~d~~~~l~~i~~~~pd~v~~~~ 202 (371)
T 4f06_A 130 AAKVAKQKGATKVAIAVSDYGPGIDAETAFKKTFEAEGGKVVEAVRMPLS--TTDFGPIMQRIKNSGADMIFTFL 202 (371)
T ss_dssp HHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT--CCCCHHHHHHHHHHTCSEEEEEC
T ss_pred hhhhhhhcCceEEEEEcCCcccchhHHHHHHHHHHhcCCceEEEEecCcc--cccHHHHHHHHHhcCCCEEEEEe
Confidence 56777888999999998777665556678899999999987643333322 22455567778888999987654
No 85
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=75.03 E-value=7.6 Score=40.02 Aligned_cols=87 Identities=10% Similarity=-0.030 Sum_probs=57.4
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcc-cCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR-VEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~-~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
..+.+++.+.|.+|+.+|++...+.....+.+.+.+++.|+++.....+. ...+ ....+..++..++|+|+..+.+
T Consensus 131 ~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d---~~~~l~~i~~~~~d~v~~~~~~ 207 (379)
T 3n0w_A 131 KTVVQAQLAKGYKTWFLMLPDAAYGDLMNAAIRRELTAGGGQIVGSVRFPFETQD---FSSYLLQAKASGAQLIVSTSGG 207 (379)
T ss_dssp HHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEECTTCCC---CHHHHHHHHHHTCSEEEECCCH
T ss_pred HHHHHHHHHcCCcEEEEEecccchhHHHHHHHHHHHHHcCCEEEEEEeCCCCCCC---HHHHHHHHHHCCCCEEEEeccc
Confidence 34667777789999999987665444456788889999898865322222 1233 3345666677899999987654
Q ss_pred hhhhHHHHHHhHh
Q psy2427 118 SVIDTCKAANLYY 130 (660)
Q Consensus 118 sviD~AK~~a~~~ 130 (660)
.|++.++....
T Consensus 208 --~~~~~~~~~~~ 218 (379)
T 3n0w_A 208 --AANINIMKQAR 218 (379)
T ss_dssp --HHHHHHHHHHH
T ss_pred --chHHHHHHHHH
Confidence 45666554444
No 86
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=74.79 E-value=5.9 Score=40.67 Aligned_cols=89 Identities=10% Similarity=0.054 Sum_probs=56.7
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
..+.+++.+.|.+|+.+|.+.........+.+.+.|++.|+++.....+.. ...+....+..+++.++|.|+..+.+.
T Consensus 148 ~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~--~~~d~~~~~~~~~~~~~dav~~~~~~~ 225 (386)
T 3sg0_A 148 EAIGKYIAKTGAKKVGYIGFSDAYGEGYYKVLAAAAPKLGFELTTHEVYAR--SDASVTGQVLKIIATKPDAVFIASAGT 225 (386)
T ss_dssp HHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEECCCEEECT--TCSCCHHHHHHHHHTCCSEEEEECCSG
T ss_pred HHHHHHHHhcCCCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEEeeCC--CCCcHHHHHHHHHhcCCCEEEEecCcc
Confidence 446777888899999999865544444557788899988987641111111 112334455666778999999887643
Q ss_pred hhhHHHHHHhHhc
Q psy2427 119 VIDTCKAANLYYC 131 (660)
Q Consensus 119 viD~AK~~a~~~~ 131 (660)
++..++.....
T Consensus 226 --~a~~~~~~~~~ 236 (386)
T 3sg0_A 226 --PAVLPQKALRE 236 (386)
T ss_dssp --GGHHHHHHHHH
T ss_pred --hHHHHHHHHHH
Confidence 45555544443
No 87
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=74.47 E-value=13 Score=35.44 Aligned_cols=84 Identities=18% Similarity=0.146 Sum_probs=53.7
Q ss_pred ChHHHHHHHHHhcCCCEEEEEECccc--cccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE
Q psy2427 36 GVTREVGMDMVNMKAQRVCVMTDPHL--SKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA 113 (660)
Q Consensus 36 g~~~~l~~~l~~~g~~r~liVtd~~~--~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa 113 (660)
++...+.+++.++..+|+++|.-... ......+.+.+.|++.|+++.+.+ +.. .+.++. .+.++ ++|.|+
T Consensus 13 ~~~~~~~~f~~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~-i~~-~~~~~~---~~~l~--~ad~I~- 84 (206)
T 3l4e_A 13 DVVPLFTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELD-IAT-ESLGEI---TTKLR--KNDFIY- 84 (206)
T ss_dssp GCHHHHHHHSCCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECC-TTT-SCHHHH---HHHHH--HSSEEE-
T ss_pred chHHHHHHHHHHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEE-ecC-CChHHH---HHHHH--hCCEEE-
Confidence 44555666666665689999975442 112366889999999999877653 221 333333 33344 468888
Q ss_pred ecCchhhhHHHHHH
Q psy2427 114 VGGGSVIDTCKAAN 127 (660)
Q Consensus 114 vGGGsviD~AK~~a 127 (660)
+|||...++.+...
T Consensus 85 l~GG~~~~l~~~L~ 98 (206)
T 3l4e_A 85 VTGGNTFFLLQELK 98 (206)
T ss_dssp ECCSCHHHHHHHHH
T ss_pred ECCCCHHHHHHHHH
Confidence 68888887777654
No 88
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=74.46 E-value=10 Score=39.11 Aligned_cols=88 Identities=10% Similarity=-0.001 Sum_probs=57.9
Q ss_pred HHHHHHHh-cCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 40 EVGMDMVN-MKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 40 ~l~~~l~~-~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
.+.+++.+ +|.+|+.+|++...+.....+.+++.|++.|+++.....+.. ...+....+..+++.++|.|+..+.+
T Consensus 132 ~~~~~l~~~~g~~~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~--~~~d~~~~~~~l~~~~~dav~~~~~~- 208 (392)
T 3lkb_A 132 ALLEYIAREKKGAKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGS--GNLDNTALLKRFEQAGVEYVVHQNVA- 208 (392)
T ss_dssp HHHHHHHHHCTTCEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCT--TCCCCHHHHHHHHHTTCCEEEEESCH-
T ss_pred HHHHHHHHhCCCCEEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCC--CCcCHHHHHHHHHhcCCCEEEEecCc-
Confidence 35667766 588999999987655444567888999999998753322222 12233445666677899999976643
Q ss_pred hhhHHHHHHhHhc
Q psy2427 119 VIDTCKAANLYYC 131 (660)
Q Consensus 119 viD~AK~~a~~~~ 131 (660)
.+++.++.....
T Consensus 209 -~~a~~~~~~~~~ 220 (392)
T 3lkb_A 209 -GPVANILKDAKR 220 (392)
T ss_dssp -HHHHHHHHHHHH
T ss_pred -chHHHHHHHHHH
Confidence 456666655444
No 89
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=74.35 E-value=6.1 Score=41.67 Aligned_cols=86 Identities=8% Similarity=-0.068 Sum_probs=61.0
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
..+.++++.+|.+|+.||++...+.....+.+.+.+++.|+++.....+.. +....+..+++.++|+||..+.+
T Consensus 143 ~~~~~~~~~~g~~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~-----d~~~~l~~i~~~~~~vii~~~~~- 216 (433)
T 4f11_A 143 PAILKLLKHYQWKRVGTLTQDVQRFSEVRNDLTGVLYGEDIEISDTESFSN-----DPCTSVKKLKGNDVRIILGQFDQ- 216 (433)
T ss_dssp HHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHSSSSSCEEEEEEEESS-----CCHHHHHHHHHTTCCEEEEECCH-
T ss_pred HHHHHHHHHcCCcEEEEEEecchhhHHHHHHHHHHHHHcCceEEEEeccCc-----CHHHHHHHHhhCCCeEEEEeCcH-
Confidence 446777888899999999977654445668888899989988764333332 23456677788899999988765
Q ss_pred hhhHHHHHHhHhc
Q psy2427 119 VIDTCKAANLYYC 131 (660)
Q Consensus 119 viD~AK~~a~~~~ 131 (660)
-|++.++.....
T Consensus 217 -~~~~~~~~~a~~ 228 (433)
T 4f11_A 217 -NMAAKVFCCAYE 228 (433)
T ss_dssp -HHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHH
Confidence 466766655443
No 90
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=72.76 E-value=7.2 Score=40.45 Aligned_cols=87 Identities=6% Similarity=-0.101 Sum_probs=58.5
Q ss_pred HHHHHHHh-cCCCEEEEEEC-ccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHH--hHhcCCCEEEEec
Q psy2427 40 EVGMDMVN-MKAQRVCVMTD-PHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKF--VRSVQCDAFIAVG 115 (660)
Q Consensus 40 ~l~~~l~~-~g~~r~liVtd-~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~--~~~~~~D~IIavG 115 (660)
.+.+++.+ +|.+|+.+|++ ...+.....+.+.+.+++.|+++.....+.. ...+....+.. +++.++|+|+..+
T Consensus 130 ~~~~~l~~~~g~~~iaii~~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~--~~~d~~~~~~~~~l~~~~~dav~~~~ 207 (391)
T 3eaf_A 130 SGLAFLASEFGQGKLALAYDSKVAYSRSPIGAIKKAAPSLGLQVVGDYDLPL--RATEADAERIAREMLAADPDYVWCGN 207 (391)
T ss_dssp HHHHHHHHHHCSEEEEEEECTTCHHHHTTHHHHHHHTGGGTEEEEEEEECCT--TCCHHHHHHHHHHHHTTCCSEEEECS
T ss_pred HHHHHHHHhcCCCEEEEEEecCChhHHHHHHHHHHHHHHcCCceeeeeccCC--CCcCHHHHHHHHHHHHcCCCEEEEec
Confidence 35566766 59899999998 5544444568888999999987653222322 23345566666 7888999999876
Q ss_pred CchhhhHHHHHHhHh
Q psy2427 116 GGSVIDTCKAANLYY 130 (660)
Q Consensus 116 GGsviD~AK~~a~~~ 130 (660)
.+ .+++.++....
T Consensus 208 ~~--~~~~~~~~~~~ 220 (391)
T 3eaf_A 208 TI--SSCSLLGRAMA 220 (391)
T ss_dssp CH--HHHHHHHHHHH
T ss_pred Cc--HHHHHHHHHHH
Confidence 64 35666654433
No 91
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=72.63 E-value=9.2 Score=38.53 Aligned_cols=87 Identities=13% Similarity=0.076 Sum_probs=53.9
Q ss_pred HHHHHHHHh-cCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcc-cCCCHHHHHHHHHHhHhcCCCEEEEecC
Q psy2427 39 REVGMDMVN-MKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR-VEPTGDSFLEATKFVRSVQCDAFIAVGG 116 (660)
Q Consensus 39 ~~l~~~l~~-~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~-~~p~~~~v~~~~~~~~~~~~D~IIavGG 116 (660)
..+.+++.+ +|.+|+.+|++.........+.+.+.+++.|+++.....+. ...+. ...++.+++.++|+|+..+.
T Consensus 126 ~~~~~~l~~~~g~~~i~~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~---~~~~~~l~~~~~d~i~~~~~ 202 (346)
T 1usg_A 126 PTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAGEKDF---SALIARLKKENIDFVYYGGY 202 (346)
T ss_dssp HHHHHHHHHTTCCSSEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTTCCCC---HHHHHHHHHTTCCEEEEESC
T ss_pred HHHHHHHHHhcCCCeEEEEECCCchHHHHHHHHHHHHHHcCCEEEEEeccCCCCcCH---HHHHHHHHhcCCCEEEEcCc
Confidence 446677754 68899999998654333345678888999998765322222 12222 34555666678999999874
Q ss_pred chhhhHHHHHHhHh
Q psy2427 117 GSVIDTCKAANLYY 130 (660)
Q Consensus 117 GsviD~AK~~a~~~ 130 (660)
+ .++..++....
T Consensus 203 ~--~~a~~~~~~~~ 214 (346)
T 1usg_A 203 Y--PEMGQMLRQAR 214 (346)
T ss_dssp H--HHHHHHHHHHH
T ss_pred c--hHHHHHHHHHH
Confidence 3 33455554433
No 92
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=72.48 E-value=8.5 Score=44.41 Aligned_cols=98 Identities=8% Similarity=0.090 Sum_probs=67.3
Q ss_pred CceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccC--CCHHHHH
Q psy2427 20 KEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVE--PTGDSFL 97 (660)
Q Consensus 20 ~~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~--p~~~~v~ 97 (660)
..+.|++.|+ ....+.+.++.+|.+++.+|+|.. ......+.+.+.+++.|+++.....+... .+..+..
T Consensus 98 ~~~~~r~~p~-------~~~a~~~l~~~~gw~~v~ii~d~~-~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~ 169 (823)
T 3kg2_A 98 HPFVIQMRPD-------LKGALLSLIEYYQWDKFAYLYDSD-RGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYR 169 (823)
T ss_dssp CSSEEECSCC-------CHHHHHHHHHHTTCSEEEEEECGG-GCTHHHHHHHHHHHHTTCEEEEEECSSCCSSSTTTTTT
T ss_pred CceEEEeCCC-------HHHHHHHHHHHCCCCEEEEEEeCC-hhHHHHHHHHHHhhccCCceEEEEeecCCCCccchhHH
Confidence 3466666554 234567778888999999999643 34456688999999999987643333322 2245667
Q ss_pred HHHHHhHhcCCCEEEEecCchhhhHHHHHH
Q psy2427 98 EATKFVRSVQCDAFIAVGGGSVIDTCKAAN 127 (660)
Q Consensus 98 ~~~~~~~~~~~D~IIavGGGsviD~AK~~a 127 (660)
..+..+++.++|+||-.|.+. ++..++.
T Consensus 170 ~~l~~i~~~~~~vii~~~~~~--~~~~~~~ 197 (823)
T 3kg2_A 170 SLFQDLELKKERRVILDCERD--KVNDIVD 197 (823)
T ss_dssp THHHHTTTTTCCEEEEECCHH--HHHHHHH
T ss_pred HHHHHHHhcCCeEEEEECCHH--HHHHHHH
Confidence 778888989999999887653 4444443
No 93
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=71.44 E-value=26 Score=35.66 Aligned_cols=85 Identities=7% Similarity=-0.062 Sum_probs=63.0
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
+.+.+.++.+|-+++.||++..-... ..+.+.+.+++.|+.+..... ......+....+..++..+++.||..+...
T Consensus 119 ~a~~~l~~~~~w~~vaii~~~d~~~~-~~~~~~~~~~~~g~~v~~~~~--~~~~~~d~~~~l~~i~~~~~~vIv~~~~~~ 195 (389)
T 4gpa_A 119 GALLSLLDHYEWNCFVFLYDTDRGYS-ILQAIMEKAGQNGWHVSAICV--ENFNDVSYRQLLEELDRRQEKKFVIDCEIE 195 (389)
T ss_dssp HHHHHHHHHTTCCEEEEEECSTTCSH-HHHHHHHHHHTTTCEEEEEEC--TTCCHHHHHHHHHHHHHHTCCEEEEECCHH
T ss_pred HHHHHHHHHcCCcEEEEEEecchhhH-HHHHHHHHHHhcCceEEEEee--cCCcchhHHHHHHHhhccCCcEEEEEechh
Confidence 34677788899999999998764443 347788889999988765432 356677888899999999999999887643
Q ss_pred hhhHHHHHHh
Q psy2427 119 VIDTCKAANL 128 (660)
Q Consensus 119 viD~AK~~a~ 128 (660)
+..+++..
T Consensus 196 --~~~~il~~ 203 (389)
T 4gpa_A 196 --RLQNILEQ 203 (389)
T ss_dssp --HHHHHHHH
T ss_pred --HHHHHHHH
Confidence 45555443
No 94
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=69.87 E-value=13 Score=36.27 Aligned_cols=88 Identities=10% Similarity=0.031 Sum_probs=59.2
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc--CCCEEEEecC
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV--QCDAFIAVGG 116 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~D~IIavGG 116 (660)
..+.++|.+.|.+|+.++++.........+-+.+.+++.|+...... ...+.+.+...+.++.+.+. ++|+|++...
T Consensus 107 ~~a~~~L~~~G~~~i~~i~~~~~~~~~R~~gf~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d 185 (280)
T 3gyb_A 107 EIATKHLIDLGHTHIAHLRVGSGAGLRRFESFEATMRAHGLEPLSND-YLGPAVEHAGYTETLALLKEHPEVTAIFSSND 185 (280)
T ss_dssp HHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHTTCCCEECC-CCSCCCHHHHHHHHHHHHHHCTTCCEEEESSH
T ss_pred HHHHHHHHHCCCCeEEEEeCCCchHHHHHHHHHHHHHHcCcCCCccc-ccCCCCHHHHHHHHHHHHhCCCCCCEEEECCh
Confidence 44677888889999999998753322233557778888888765322 44566666666666655443 5899999887
Q ss_pred chhhhHHHHHH
Q psy2427 117 GSVIDTCKAAN 127 (660)
Q Consensus 117 GsviD~AK~~a 127 (660)
..++-+.+++.
T Consensus 186 ~~a~g~~~al~ 196 (280)
T 3gyb_A 186 ITAIGALGAAR 196 (280)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 76666666553
No 95
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=68.85 E-value=4.1 Score=42.85 Aligned_cols=79 Identities=14% Similarity=0.164 Sum_probs=53.2
Q ss_pred CCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHh
Q psy2427 49 KAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANL 128 (660)
Q Consensus 49 g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~ 128 (660)
|.+|+.||++...+.....+.+.+.+++.|+++.....+.. ...+....+..++..++|+|+-.|-+ .-|.+.++..
T Consensus 163 ~~~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~--~~~d~~~~l~~i~~~~~d~v~~~~~~-~~~~~~~~~~ 239 (419)
T 3h5l_A 163 PNNKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAI--PVSDWGPTLAKLRADPPAVIVVTHFY-PQDQALFMNQ 239 (419)
T ss_dssp SSSEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCS--SCSCCHHHHHHHHHSCCSEEEECCCC-HHHHHHHHHH
T ss_pred CCCEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCC--CCccHHHHHHHHHhcCCCEEEEcccc-CchHHHHHHH
Confidence 77999999987765555668888999999998764333322 22455666777888899998876532 1245555544
Q ss_pred Hh
Q psy2427 129 YY 130 (660)
Q Consensus 129 ~~ 130 (660)
..
T Consensus 240 ~~ 241 (419)
T 3h5l_A 240 FM 241 (419)
T ss_dssp HT
T ss_pred HH
Confidence 33
No 96
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=68.39 E-value=18 Score=34.05 Aligned_cols=75 Identities=13% Similarity=0.037 Sum_probs=45.8
Q ss_pred CEEEEEEC-ccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhH
Q psy2427 51 QRVCVMTD-PHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLY 129 (660)
Q Consensus 51 ~r~liVtd-~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~ 129 (660)
++++++.. +.+.+ ...++.+ +.+.++.++. .++++..+.++.+ +.++|+||+=|| +|+++...
T Consensus 5 ~~I~~iapy~~l~~--~~~~i~~---e~~~~i~i~~-----~~l~~~v~~a~~~-~~~~dVIISRGg-----ta~~lr~~ 68 (196)
T 2q5c_A 5 LKIALISQNENLLN--LFPKLAL---EKNFIPITKT-----ASLTRASKIAFGL-QDEVDAIISRGA-----TSDYIKKS 68 (196)
T ss_dssp CEEEEEESCHHHHH--HHHHHHH---HHTCEEEEEE-----CCHHHHHHHHHHH-TTTCSEEEEEHH-----HHHHHHTT
T ss_pred CcEEEEEccHHHHH--HHHHHHh---hhCCceEEEE-----CCHHHHHHHHHHh-cCCCeEEEECCh-----HHHHHHHh
Confidence 45555543 44443 2244444 3345655543 4467666666666 789999999887 45555432
Q ss_pred hcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC
Q psy2427 130 YCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS 165 (660)
Q Consensus 130 ~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~ 165 (660)
.. +|+|.||.|.
T Consensus 69 ~~------------------------iPVV~I~~s~ 80 (196)
T 2q5c_A 69 VS------------------------IPSISIKVTR 80 (196)
T ss_dssp CS------------------------SCEEEECCCH
T ss_pred CC------------------------CCEEEEcCCH
Confidence 21 8999999985
No 97
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=68.38 E-value=11 Score=39.18 Aligned_cols=87 Identities=10% Similarity=-0.004 Sum_probs=60.8
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
..+.++++.+|.+++.||+|.. +.....+.+++.+++.|+++... .+. +...+....+..++..++|+||..+.+
T Consensus 127 ~~~~~~~~~~g~~~v~ii~d~~-~g~~~~~~~~~~~~~~g~~v~~~-~~~--~~~~d~~~~l~~i~~~~~~vi~~~~~~- 201 (395)
T 3h6g_A 127 RAILDLVQFFKWKTVTVVYDDS-TGLIRLQELIKAPSRYNLRLKIR-QLP--ADTKDAKPLLKEMKRGKEFHVIFDCSH- 201 (395)
T ss_dssp HHHHHHHHHTTCSEEEEEESST-HHHHHTHHHHTGGGTSSCEEEEE-ECC--SSGGGGHHHHHHHHHTTCCEEEEESCH-
T ss_pred HHHHHHHHHCCCeEEEEEEECh-hHHHHHHHHHHhhhcCCceEEEE-EeC--CCchhHHHHHHHHhhcCCeEEEEECCH-
Confidence 3466777888999999998754 33334477788888889887643 233 234567788888898999999998765
Q ss_pred hhhHHHHHHhHhc
Q psy2427 119 VIDTCKAANLYYC 131 (660)
Q Consensus 119 viD~AK~~a~~~~ 131 (660)
-|+..++.....
T Consensus 202 -~~~~~~~~qa~~ 213 (395)
T 3h6g_A 202 -EMAAGILKQALA 213 (395)
T ss_dssp -HHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHH
Confidence 466666654443
No 98
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=68.26 E-value=10 Score=38.85 Aligned_cols=49 Identities=18% Similarity=0.189 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC
Q psy2427 92 TGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS 165 (660)
Q Consensus 92 ~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~ 165 (660)
+.+..+++++.++++++|.+|.|||--.++.|..++.. + +|+|.||-|.
T Consensus 79 ~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~---~----------------------i~vvgiPkTI 127 (320)
T 1pfk_A 79 DENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEM---G----------------------FPCIGLPGTI 127 (320)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT---T----------------------CCEEEEEBCT
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCchHHHHHHHHhh---C----------------------CCEEEEeccc
Confidence 46688999999999999999999999999988887642 2 8999999997
No 99
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=68.10 E-value=16 Score=36.43 Aligned_cols=88 Identities=16% Similarity=0.218 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCccc-------CCCHHHHHHHHHHhHhcCCCE
Q psy2427 38 TREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRV-------EPTGDSFLEATKFVRSVQCDA 110 (660)
Q Consensus 38 ~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~-------~p~~~~v~~~~~~~~~~~~D~ 110 (660)
...+.+.++..|.+|+.|+| +.... .-+.+.+.|++.|+++......+. .-+.+.+.++++.+.+.++|.
T Consensus 134 ~~A~~~al~~~g~~rvgvlt-p~~~~--~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gada 210 (273)
T 2xed_A 134 AGALVEGLRALDAQRVALVT-PYMRP--LAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDA 210 (273)
T ss_dssp HHHHHHHHHHTTCCEEEEEE-CSCHH--HHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSE
T ss_pred HHHHHHHHHHcCCCeEEEEc-CChhh--hHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCE
Confidence 34445556667889999998 43322 225778889889999765443222 234567777888777778997
Q ss_pred EEEe--cCchhhhHHHHHHh
Q psy2427 111 FIAV--GGGSVIDTCKAANL 128 (660)
Q Consensus 111 IIav--GGGsviD~AK~~a~ 128 (660)
||-= -+=..++..+.+..
T Consensus 211 IvLg~CT~l~~~~~~~~le~ 230 (273)
T 2xed_A 211 LVISCAVQMPSLPLVETAER 230 (273)
T ss_dssp EEEESSSSSCCTTHHHHHHH
T ss_pred EEEcCCCCcchHHhHHHHHH
Confidence 6633 34444455554433
No 100
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=67.83 E-value=9.7 Score=38.96 Aligned_cols=77 Identities=9% Similarity=-0.125 Sum_probs=53.2
Q ss_pred HHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 38 TREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 38 ~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
...+.+++.+.|.||+.|+.+...+.....+.+.+.+++.|.++.....+... .++...+..+ ..++|+|+-+|.+
T Consensus 110 ~~~~a~~a~~~g~k~vail~~~~~yG~~~~~~F~~~~~~~Gg~vv~~~~y~~~---~d~~~~l~~i-~~~pDaV~~~~~~ 185 (325)
T 2h4a_A 110 AESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVRWQQLAGTDANIRYYNLP---ADVTYFVQEN-NSNTTALYAVASP 185 (325)
T ss_dssp HHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHHHHHHHSSCCEEEEESST---THHHHHHHHS-TTCCCEEEECCCH
T ss_pred HHHHHHHHHHcCCCeEEEEEcCCcHHHHHHHHHHHHHHHcCCCcceeEecCCH---HHHHHHHHhc-CCCCCEEEEeCCH
Confidence 35677888888999999999877776667788888888877664432222222 2444445544 3789999998776
Q ss_pred h
Q psy2427 118 S 118 (660)
Q Consensus 118 s 118 (660)
.
T Consensus 186 ~ 186 (325)
T 2h4a_A 186 T 186 (325)
T ss_dssp H
T ss_pred H
Confidence 4
No 101
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=67.53 E-value=9.6 Score=38.99 Aligned_cols=50 Identities=16% Similarity=0.183 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCC
Q psy2427 92 TGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSG 166 (660)
Q Consensus 92 ~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~g 166 (660)
+.+..+++++.++++++|.+|.|||--.++.|..++.. + +|+|.||-|.-
T Consensus 78 ~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~---~----------------------i~vvgiPkTID 127 (319)
T 1zxx_A 78 EEEGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRH---G----------------------FNSIGLPGTID 127 (319)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT---T----------------------CCEEEEEEETT
T ss_pred CHHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHh---C----------------------CCEEEEeeccc
Confidence 56789999999999999999999999999988887642 2 89999999973
No 102
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=67.48 E-value=13 Score=37.99 Aligned_cols=88 Identities=17% Similarity=0.101 Sum_probs=56.2
Q ss_pred HHHHHHHH-hcCCCEEEEEEC-ccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC
Q psy2427 39 REVGMDMV-NMKAQRVCVMTD-PHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG 116 (660)
Q Consensus 39 ~~l~~~l~-~~g~~r~liVtd-~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG 116 (660)
..+.+++. .+|.+|+.+|++ .........+.+.+.+++.|+++.... +.. ...+....++.++..++|+|+..+.
T Consensus 137 ~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~-~~~--~~~d~~~~~~~l~~~~~d~v~~~~~ 213 (366)
T 3td9_A 137 AAMAVFAYKNLGAKRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVF-FRS--GDQDFSAQLSVAMSFNPDAIYITGY 213 (366)
T ss_dssp HHHHHHHHHTSCCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEE-ECT--TCCCCHHHHHHHHHTCCSEEEECSC
T ss_pred HHHHHHHHHhcCCcEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEE-eCC--CCccHHHHHHHHHhcCCCEEEEccc
Confidence 34667774 469899999974 233333345778889999999875433 322 2223344566677789999998655
Q ss_pred chhhhHHHHHHhHhc
Q psy2427 117 GSVIDTCKAANLYYC 131 (660)
Q Consensus 117 GsviD~AK~~a~~~~ 131 (660)
+ .+++.++.....
T Consensus 214 ~--~~a~~~~~~~~~ 226 (366)
T 3td9_A 214 Y--PEIALISRQARQ 226 (366)
T ss_dssp H--HHHHHHHHHHHH
T ss_pred h--hHHHHHHHHHHH
Confidence 4 466666655443
No 103
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=65.35 E-value=23 Score=33.84 Aligned_cols=87 Identities=10% Similarity=0.062 Sum_probs=54.1
Q ss_pred HHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccC-------CCHHHHHHHHHHhHhc--CC
Q psy2427 38 TREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVE-------PTGDSFLEATKFVRSV--QC 108 (660)
Q Consensus 38 ~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~-------p~~~~v~~~~~~~~~~--~~ 108 (660)
...+.+.++..|.+|+.|+| +.... .-+...+.|++.|+++......+.. .+.+.+.++++.+.+. ++
T Consensus 96 ~~a~~~a~~~~g~~rvgvlt-~~~~~--~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ga 172 (223)
T 2dgd_A 96 EESVYELLKKLNVRKLWIGT-PYIKE--RTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKA 172 (223)
T ss_dssp HHHHHHHHHHTTCCEEEEEE-SSCHH--HHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTS
T ss_pred HHHHHHHHHHcCCCeEEEEe-CCchH--HHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCCC
Confidence 34455566667889999998 44322 1256777888899997655432221 3456677788777777 89
Q ss_pred CEEEEec-CchhhhHHHHHH
Q psy2427 109 DAFIAVG-GGSVIDTCKAAN 127 (660)
Q Consensus 109 D~IIavG-GGsviD~AK~~a 127 (660)
|.||-=. +=+.++..+.+.
T Consensus 173 daIvLgCT~l~~~~~~~~l~ 192 (223)
T 2dgd_A 173 DAVYIACTALSTYEAVQYLH 192 (223)
T ss_dssp SEEEECCTTSCCTTHHHHHH
T ss_pred CEEEEeCCcccHHHHHHHHH
Confidence 9776433 333335555443
No 104
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=64.56 E-value=18 Score=38.11 Aligned_cols=83 Identities=4% Similarity=0.005 Sum_probs=54.5
Q ss_pred HHHHHHhcCCCEEEEEECccccccc---hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 41 VGMDMVNMKAQRVCVMTDPHLSKLA---PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 41 l~~~l~~~g~~r~liVtd~~~~~~~---~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
+.+.++.+|.+++.+|++...+... ..+.+.+.+++.|+++.. ....+. +..+....++.++ .++|+||..|.+
T Consensus 145 ~~~~~~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~~~g~~v~~-~~~~~~-~~~d~~~~l~~i~-~~~~vii~~~~~ 221 (441)
T 1jdp_A 145 MLALFRHHHWSRAALVYSDDKLERNCYFTLEGVHEVFQEEGLHTSI-YSFDET-KDLDLEDIVRNIQ-ASERVVIMCASS 221 (441)
T ss_dssp HHHHHHHHTCCEEEEEEECCSSSCHHHHHHHHHHHHHHHHTCEEEE-EEECTT-SCCCHHHHHHHHH-HHCSEEEEESCH
T ss_pred HHHHHHhcCCcEEEEEEEcCCcccchHHHHHHHHHHHHhcCcEEEE-EEecCC-cccCHHHHHHHhh-cCCcEEEEecCH
Confidence 5566777888999998876554444 557888999999988753 222221 1123556667777 789999998765
Q ss_pred hhhhHHHHHHh
Q psy2427 118 SVIDTCKAANL 128 (660)
Q Consensus 118 sviD~AK~~a~ 128 (660)
. |+..++..
T Consensus 222 ~--~~~~~~~~ 230 (441)
T 1jdp_A 222 D--TIRSIMLV 230 (441)
T ss_dssp H--HHHHHHHH
T ss_pred H--HHHHHHHH
Confidence 3 55555433
No 105
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=64.48 E-value=10 Score=39.97 Aligned_cols=72 Identities=14% Similarity=0.218 Sum_probs=42.2
Q ss_pred CCEEEEEECccccc-cchHHHHHHHHHhC--CCeEEEEeCcccCCCHHHHH-HH-----------------HHHhHhcCC
Q psy2427 50 AQRVCVMTDPHLSK-LAPVKATLDSLTRH--GVKFELFDKVRVEPTGDSFL-EA-----------------TKFVRSVQC 108 (660)
Q Consensus 50 ~~r~liVtd~~~~~-~~~~~~i~~~L~~~--gi~~~~~~~~~~~p~~~~v~-~~-----------------~~~~~~~~~ 108 (660)
.++++||+.+.-.+ .....++.+.|.+. |+++.+-.... +.+. +. .......++
T Consensus 41 ~k~V~II~n~~~~~~~~~~~~l~~~L~~~~~gi~V~ve~~~a-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (388)
T 3afo_A 41 LQNVYITKKPWTPSTREAMVEFITHLHESYPEVNVIVQPDVA-----EEISQDFKSPLENDPNRPHILYTGPEQDIVNRT 115 (388)
T ss_dssp CCEEEEEECTTCHHHHHHHHHHHHHHHHHCTTCEEECCHHHH-----HHHHTTCCSCGGGCTTSCEEEEECCHHHHHHHC
T ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCeEEEEeCchh-----hhhhhhccccccccccccccccccchhhcccCC
Confidence 47899999865322 23457888889887 77765321110 0000 00 000112468
Q ss_pred CEEEEecC-chhhhHHHHH
Q psy2427 109 DAFIAVGG-GSVIDTCKAA 126 (660)
Q Consensus 109 D~IIavGG-GsviD~AK~~ 126 (660)
|+||++|| |+++-+++.+
T Consensus 116 DlVIvlGGDGTlL~aa~~~ 134 (388)
T 3afo_A 116 DLLVTLGGDGTILHGVSMF 134 (388)
T ss_dssp SEEEEEESHHHHHHHHHTT
T ss_pred CEEEEEeCcHHHHHHHHHh
Confidence 99999999 8887777654
No 106
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=64.22 E-value=12 Score=38.28 Aligned_cols=49 Identities=12% Similarity=0.209 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCC
Q psy2427 93 GDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSG 166 (660)
Q Consensus 93 ~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~g 166 (660)
.+..+++++.+++.++|.+|.|||--.++.|..++. .+ +|+|.||=|.-
T Consensus 79 ~e~~~~~~~~l~~~~Id~L~~IGGdgS~~~a~~l~~---~~----------------------i~vigiPkTID 127 (319)
T 4a3s_A 79 VEGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTE---HG----------------------FPCVGVPGTID 127 (319)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHHHH---TT----------------------CCEEEEEEETT
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHhc---cC----------------------CcEEEeecccc
Confidence 567889999999999999999999999999876642 11 89999999973
No 107
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=62.59 E-value=22 Score=34.59 Aligned_cols=84 Identities=20% Similarity=0.223 Sum_probs=52.5
Q ss_pred HHHHHHHHhcCCCEEEEEECccccc--cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc---CCCEEEE
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV---QCDAFIA 113 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~---~~D~IIa 113 (660)
..+.++|.+.|.+|+.+|++..... ....+-+.+.+++.|+++.++. .+-+.+...+.++.+.+. ++|+|++
T Consensus 107 ~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~ai~~ 183 (277)
T 3cs3_A 107 TQAIEQFVNVGSKKVLLLSGPEKGYDSQERLAVSTRELTRFGIPYEIIQ---GDFTEPSGYAAAKKILSQPQTEPVDVFA 183 (277)
T ss_dssp HHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCEEEEE---CCSSHHHHHHHHHHHTTSCCCSSEEEEE
T ss_pred HHHHHHHHHcCCceEEEEeCCccCccHHHHHHHHHHHHHHcCCCeeEEe---CCCChhHHHHHHHHHHhcCCCCCcEEEE
Confidence 4467778888999999998764211 1123456678888888765332 234555555555554433 6799999
Q ss_pred ecCchhhhHHHH
Q psy2427 114 VGGGSVIDTCKA 125 (660)
Q Consensus 114 vGGGsviD~AK~ 125 (660)
.....++-+.++
T Consensus 184 ~~d~~a~g~~~a 195 (277)
T 3cs3_A 184 FNDEMAIGVYKY 195 (277)
T ss_dssp SSHHHHHHHHHH
T ss_pred cChHHHHHHHHH
Confidence 876655544443
No 108
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=62.37 E-value=11 Score=34.46 Aligned_cols=44 Identities=7% Similarity=0.003 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEE
Q psy2427 38 TREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFEL 83 (660)
Q Consensus 38 ~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~ 83 (660)
++++.+.|++ .+|++|+.|..+...+..+.+.+..++.++.+..
T Consensus 24 v~~aa~~L~~--AkrPvil~G~g~~~~~a~~~l~~lae~~~iPV~~ 67 (170)
T 3cf4_G 24 PEMAAKIISK--AKRPLLMVGTLALDPELLDRVVKISKAANIPIAA 67 (170)
T ss_dssp HHHHHHHHHH--CSSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHc--CCCCEEEECCCccchhHHHHHHHHHHHhCCCEEE
Confidence 6777777766 3899999999877665667788888788888764
No 109
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=62.31 E-value=11 Score=34.92 Aligned_cols=42 Identities=5% Similarity=-0.006 Sum_probs=31.8
Q ss_pred HHHH-HHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEE
Q psy2427 38 TREV-GMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFEL 83 (660)
Q Consensus 38 ~~~l-~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~ 83 (660)
++++ .+.|++- +|++|+.|. +......+++.+..++ ++.+..
T Consensus 24 i~~a~a~lI~~A--kRPvIl~Gg-v~~~~A~~eL~~~ae~-~iPVvt 66 (174)
T 1ytl_A 24 KGKPVANMIKKA--KRPLLIVGP-DMTDEMFERVKKFVEK-DITVVA 66 (174)
T ss_dssp CHHHHHHHHHHC--SSEEEEECS-CCCHHHHHHHHHHHTS-SSEEEE
T ss_pred HHHHHHHHHHcC--CCCEEEECC-CCCccHHHHHHHHHHc-CCCEEE
Confidence 5666 7767764 899999998 8766566788887778 998773
No 110
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=62.27 E-value=16 Score=35.99 Aligned_cols=88 Identities=10% Similarity=0.026 Sum_probs=55.9
Q ss_pred HHHHHHHHhc--CCCEEEEEECccccc-cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc--CCCEEEE
Q psy2427 39 REVGMDMVNM--KAQRVCVMTDPHLSK-LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV--QCDAFIA 113 (660)
Q Consensus 39 ~~l~~~l~~~--g~~r~liVtd~~~~~-~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~D~IIa 113 (660)
..+.++|.+. |.+|+.+++++.... ....+-+++.+++.++.+........+.+.+...+.++.+.+. ++|+|++
T Consensus 114 ~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~ 193 (305)
T 3g1w_A 114 MNAAYKMAELLDGEGEVAVITLPNQLNHQERTTGFKETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAGIFA 193 (305)
T ss_dssp HHHHHHHHHHTTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred HHHHHHHHHHhCCCcEEEEEeCCCcccHHHHHHHHHHHHHhhCCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCceEEEE
Confidence 3467777777 888999999764321 1123446677877777655433334456666666666555433 5789999
Q ss_pred ecCchhhhHHHHH
Q psy2427 114 VGGGSVIDTCKAA 126 (660)
Q Consensus 114 vGGGsviD~AK~~ 126 (660)
.....++-+.+++
T Consensus 194 ~~d~~a~g~~~al 206 (305)
T 3g1w_A 194 TEANGGVGVGDAV 206 (305)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CCCcchhhHHHHH
Confidence 8777766665554
No 111
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=61.85 E-value=22 Score=34.80 Aligned_cols=88 Identities=15% Similarity=0.149 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCCCEEEEEECccccc--cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc--CCCEEEEe
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV--QCDAFIAV 114 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~D~IIav 114 (660)
..+.++|.+.|.+|+.+++++.-.. ....+-+++.+++.|+.+........+.+.+...+.++.+.+. ++|+|++.
T Consensus 116 ~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 195 (288)
T 3gv0_A 116 YEAVERLAQCGRKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDAVTIETPLEKIRDFGQRLMQSSDRPDGIVSI 195 (288)
T ss_dssp HHHHHHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCSCCTTSCHHHHHHHHHHHTTSSSCCSEEEES
T ss_pred HHHHHHHHHCCCCeEEEEcCCcccchHHHHHHHHHHHHHHcCCCcchhheeccccchHHHHHHHHHHHhCCCCCcEEEEc
Confidence 4567788888999999998764221 1233556778888888765322234456667666666655443 58999998
Q ss_pred cCchhhhHHHHH
Q psy2427 115 GGGSVIDTCKAA 126 (660)
Q Consensus 115 GGGsviD~AK~~ 126 (660)
....++-+.+++
T Consensus 196 ~d~~A~g~~~al 207 (288)
T 3gv0_A 196 SGSSTIALVAGF 207 (288)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 766555444443
No 112
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=61.66 E-value=38 Score=33.47 Aligned_cols=83 Identities=13% Similarity=0.147 Sum_probs=54.8
Q ss_pred HHHHHHHHhc--CCCEEEEEECcccc-ccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEec
Q psy2427 39 REVGMDMVNM--KAQRVCVMTDPHLS-KLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVG 115 (660)
Q Consensus 39 ~~l~~~l~~~--g~~r~liVtd~~~~-~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavG 115 (660)
....+++.++ |.+|+.+|+++... .....+.+++.+++.|+++..... .+.++..++++.+.. ++|+|++..
T Consensus 127 ~~~~~~l~~~~Pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~~----~~~~~~~~~~~~l~~-~~dai~~~~ 201 (302)
T 2qh8_A 127 EQHVELIKEILPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATA----LKSADVQSATQAIAE-KSDVIYALI 201 (302)
T ss_dssp HHHHHHHHHHSTTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEEC----SSGGGHHHHHHHHGG-GCSEEEECS
T ss_pred HHHHHHHHHhCCCCcEEEEEecCCCcchHHHHHHHHHHHHHcCCEEEEEec----CChHHHHHHHHHHhc-cCCEEEECC
Confidence 4445677776 89999999987532 122346678888999998754322 123445555555543 799999988
Q ss_pred CchhhhHHHHH
Q psy2427 116 GGSVIDTCKAA 126 (660)
Q Consensus 116 GGsviD~AK~~ 126 (660)
...++..-+++
T Consensus 202 D~~a~g~~~~l 212 (302)
T 2qh8_A 202 DNTVASAIEGM 212 (302)
T ss_dssp CHHHHTTHHHH
T ss_pred cHhHHHHHHHH
Confidence 77776655544
No 113
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=61.56 E-value=22 Score=34.32 Aligned_cols=88 Identities=7% Similarity=0.004 Sum_probs=52.8
Q ss_pred HHHHHHHHhcCCCEEEEEECccccc--cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh--cCCCEEEEe
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS--VQCDAFIAV 114 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~IIav 114 (660)
..+.++|.+.|.+|+.+++++.-.. ....+-+.+.+++.|+.+....-...+.+.+...+.++.+.+ .++|+|++.
T Consensus 109 ~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 188 (275)
T 3d8u_A 109 KACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLNALVCS 188 (275)
T ss_dssp HHHHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHHHHHHHTTCCCCCEEECSSCCCHHHHHHHHHHHHTTCTTCCEEEES
T ss_pred HHHHHHHHHCCCCeEEEEcCCCCCchHHHHHHHHHHHHHHcCCCCCccEEEeCCCChhHHHHHHHHHHhCCCCCCEEEEc
Confidence 4467778888999999998764211 112345677888888753211011234456665555555443 358999998
Q ss_pred cCchhhhHHHHH
Q psy2427 115 GGGSVIDTCKAA 126 (660)
Q Consensus 115 GGGsviD~AK~~ 126 (660)
....++-+.+++
T Consensus 189 ~d~~a~g~~~al 200 (275)
T 3d8u_A 189 HEEIAIGALFEC 200 (275)
T ss_dssp SHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 766655555444
No 114
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=61.44 E-value=51 Score=27.06 Aligned_cols=63 Identities=16% Similarity=0.233 Sum_probs=41.5
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAA 126 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~ 126 (660)
+|++||-|.... .+.+...|++.|+++..+. +..++.+.+++.++|+||- ..|..-+++.+.+
T Consensus 3 ~~ilivdd~~~~----~~~l~~~L~~~g~~v~~~~---------~~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~l 68 (120)
T 3f6p_A 3 KKILVVDDEKPI----ADILEFNLRKEGYEVHCAH---------DGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREV 68 (120)
T ss_dssp CEEEEECSCHHH----HHHHHHHHHHTTCEEEEES---------SHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHH
T ss_pred CeEEEEECCHHH----HHHHHHHHHhCCEEEEEeC---------CHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 578888776532 2556777888888765442 2345666777788998775 4566666666655
No 115
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=61.04 E-value=16 Score=35.75 Aligned_cols=88 Identities=14% Similarity=0.051 Sum_probs=52.7
Q ss_pred HHHHHHHHhcCCCEEEEEECccc--cccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh--cCCCEEEEe
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHL--SKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS--VQCDAFIAV 114 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~--~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~IIav 114 (660)
..+.++|.+.|.+|+.++++..- ......+-+.+.+++.|+++........+.+.+...+.++.+.+ .++|+|++.
T Consensus 115 ~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 194 (289)
T 1dbq_A 115 YMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCG 194 (289)
T ss_dssp HHHHHHHHHTTCCSEEEECCC------CHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEES
T ss_pred HHHHHHHHHCCCCeEEEEecCCccccHHHHHHHHHHHHHHCCCCCChHHeEeCCCCHHHHHHHHHHHHhCCCCCCEEEEC
Confidence 44677888889999999987531 11223455778888888764311111223355555555555544 468999998
Q ss_pred cCchhhhHHHHH
Q psy2427 115 GGGSVIDTCKAA 126 (660)
Q Consensus 115 GGGsviD~AK~~ 126 (660)
....++-+.+++
T Consensus 195 ~d~~a~g~~~al 206 (289)
T 1dbq_A 195 GDIMAMGALCAA 206 (289)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 766655555444
No 116
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=61.03 E-value=41 Score=33.08 Aligned_cols=84 Identities=8% Similarity=0.090 Sum_probs=54.5
Q ss_pred HHHHHHHHHhc--CCCEEEEEECcccc-ccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEe
Q psy2427 38 TREVGMDMVNM--KAQRVCVMTDPHLS-KLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAV 114 (660)
Q Consensus 38 ~~~l~~~l~~~--g~~r~liVtd~~~~-~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIav 114 (660)
.....++|.++ |.+|+.+++++... .....+.+++.+++.|+++...... +.++..++.+.+.. ++|+|++.
T Consensus 119 ~~~~~~~l~~~~pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~~~----~~~~~~~~~~~l~~-~~dai~~~ 193 (295)
T 3lft_A 119 AQQQVELIKALTPNVKTIGALYSSSEDNSKTQVEEFKAYAEKAGLTVETFAVP----STNEIASTVTVMTS-KVDAIWVP 193 (295)
T ss_dssp HHHHHHHHHHHCTTCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEES----SGGGHHHHHHHHTT-TCSEEEEC
T ss_pred HHHHHHHHHHhCCCCcEEEEEeCCCCcchHHHHHHHHHHHHHcCCEEEEEecC----CHHHHHHHHHHHHh-cCCEEEEC
Confidence 34555777776 88999999987532 1223466788889999987543211 23345555555543 79999998
Q ss_pred cCchhhhHHHHH
Q psy2427 115 GGGSVIDTCKAA 126 (660)
Q Consensus 115 GGGsviD~AK~~ 126 (660)
....++..-+++
T Consensus 194 ~D~~a~g~~~~l 205 (295)
T 3lft_A 194 IDNTIASGFPTV 205 (295)
T ss_dssp SCHHHHHTHHHH
T ss_pred CchhHHHHHHHH
Confidence 777666655544
No 117
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=60.95 E-value=18 Score=36.59 Aligned_cols=88 Identities=11% Similarity=0.070 Sum_probs=54.9
Q ss_pred HHHHHHHh-cCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 40 EVGMDMVN-MKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 40 ~l~~~l~~-~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
.+.+++.+ +|.+|+.+|++.........+.+++.|++.|+++.....+. +...+....++.++..++|.|+..+.+
T Consensus 127 ~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~--~~~~d~~~~~~~l~~~~~d~v~~~~~~- 203 (356)
T 3ipc_A 127 IAGKYLADHFKDAKVAIIHDKTPYGQGLADETKKAANAAGVTEVMYEGVN--VGDKDFSALISKMKEAGVSIIYWGGLH- 203 (356)
T ss_dssp HHHHHHHHHCTTCCEEEEECSSHHHHHHHHHHHHHHHHTTCCCSEEEECC--TTCCCCHHHHHHHHHTTCCEEEEESCH-
T ss_pred HHHHHHHHhcCCCEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeeC--CCCCCHHHHHHHHHhcCCCEEEEccCc-
Confidence 35565555 48899999998654444455778889999998753221121 112233445666677899999976543
Q ss_pred hhhHHHHHHhHhc
Q psy2427 119 VIDTCKAANLYYC 131 (660)
Q Consensus 119 viD~AK~~a~~~~ 131 (660)
.++++++.....
T Consensus 204 -~~a~~~~~~~~~ 215 (356)
T 3ipc_A 204 -TEAGLIIRQAAD 215 (356)
T ss_dssp -HHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHH
Confidence 456666654443
No 118
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=60.10 E-value=14 Score=39.30 Aligned_cols=54 Identities=19% Similarity=0.224 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhc-CCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC
Q psy2427 92 TGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYC-DPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS 165 (660)
Q Consensus 92 ~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~-~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~ 165 (660)
+.+..+++++.+++.++|.+|.|||-=.++.|..++.... ++ ..+|+|.||-|.
T Consensus 89 ~~~~~~~~~~~l~~~~Id~Lv~IGGdgS~~~A~~L~~~~~~~g--------------------~~i~vIGiPkTI 143 (419)
T 3hno_A 89 NRREYERLIEVFKAHDIGYFFYNGGGDSADTCLKVSQLSGTLG--------------------YPIQAIHVPKTV 143 (419)
T ss_dssp CHHHHHHHHHHHHHTTEEEEEEEESHHHHHHHHHHHHHHHHTT--------------------CCCEEEEEECCT
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhC--------------------CCccEEEecccc
Confidence 5688999999999999999999999888888888775432 11 018999999997
No 119
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=60.09 E-value=33 Score=33.70 Aligned_cols=79 Identities=11% Similarity=0.015 Sum_probs=47.0
Q ss_pred cCCCEEEEEECccccc--cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc----CCCEEEEecCchhhh
Q psy2427 48 MKAQRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV----QCDAFIAVGGGSVID 121 (660)
Q Consensus 48 ~g~~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~----~~D~IIavGGGsviD 121 (660)
.|.+|+.+|+++.-.. ....+-+++.|++.|+.+........+.+.+...+.++.+... ++|+|++.....++-
T Consensus 138 ~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g 217 (309)
T 2fvy_A 138 DGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 217 (309)
T ss_dssp SSSEEEEEEECSTTCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTCHHHHHHHHHHHHTSTTGGGCCEEEESSHHHHHH
T ss_pred CCceEEEEEEcCCCCccHHHHHHHHHHHHHhcCCceEEEEEecCCCCHHHHHHHHHHHHHhCCCCCccEEEECCchhHHH
Confidence 6767888888753211 1223456788888888654322223344556555555544332 689999987766665
Q ss_pred HHHHH
Q psy2427 122 TCKAA 126 (660)
Q Consensus 122 ~AK~~ 126 (660)
+.+++
T Consensus 218 ~~~al 222 (309)
T 2fvy_A 218 AVEAL 222 (309)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 120
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=59.75 E-value=61 Score=27.22 Aligned_cols=65 Identities=14% Similarity=0.083 Sum_probs=44.5
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
.|++||-|.... .+.+...|++.|+.+..+. +..++.+.+++..+|+||- +.+...+++.+.+.
T Consensus 7 ~~iLivdd~~~~----~~~l~~~l~~~g~~v~~~~---------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~ 73 (140)
T 3grc_A 7 PRILICEDDPDI----ARLLNLMLEKGGFDSDMVH---------SAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALR 73 (140)
T ss_dssp SEEEEECSCHHH----HHHHHHHHHHTTCEEEEEC---------SHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHH
T ss_pred CCEEEEcCCHHH----HHHHHHHHHHCCCeEEEEC---------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 688888776542 2567777888888865543 2456677778888998876 46666777776664
Q ss_pred h
Q psy2427 128 L 128 (660)
Q Consensus 128 ~ 128 (660)
.
T Consensus 74 ~ 74 (140)
T 3grc_A 74 R 74 (140)
T ss_dssp T
T ss_pred h
Confidence 3
No 121
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*
Probab=59.68 E-value=9.7 Score=38.88 Aligned_cols=77 Identities=16% Similarity=0.206 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHH-hCCCeEEEEeCcccCCCHHHHHHHHHHhHhc---CCCEEEE
Q psy2427 38 TREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLT-RHGVKFELFDKVRVEPTGDSFLEATKFVRSV---QCDAFIA 113 (660)
Q Consensus 38 ~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~-~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~---~~D~IIa 113 (660)
+.+..+.++.++.+++.+|+...+++..-.+.+.+.++ ..|+++.+.++-+ |............ +.-+||=
T Consensus 70 L~~f~~~~~~~~v~~i~~vATsA~R~A~N~~~fl~~v~~~~G~~i~vIsg~e-----EA~l~~~gv~~~l~~~~~~lvvD 144 (315)
T 1t6c_A 70 LKEYKKLIDEFKVERVKAVATEAIRRAKNAEEFLERVKREVGLVVEVITPEQ-----EGRYAYLAVAYSLKPEGEVCVVD 144 (315)
T ss_dssp HHHHHHHHHHTTCSEEEEEECHHHHTSTTHHHHHHHHHHHTCCCEEECCHHH-----HHHHHHHHHHHHTCCCSEEEEEE
T ss_pred HHHHHHHHHHCCCCeEEEEEcHHHHcCcCHHHHHHHHHHHHCCCEEEcCHHH-----HHHHHHHHHHhhcccCCCEEEEE
Confidence 44556666778888999999888776654466776666 4699988876521 1111111112211 1239999
Q ss_pred ecCchh
Q psy2427 114 VGGGSV 119 (660)
Q Consensus 114 vGGGsv 119 (660)
|||||+
T Consensus 145 IGGGSt 150 (315)
T 1t6c_A 145 QGGGST 150 (315)
T ss_dssp EETTEE
T ss_pred eCCCcE
Confidence 999996
No 122
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Probab=59.44 E-value=21 Score=36.23 Aligned_cols=77 Identities=16% Similarity=0.230 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHh-CCCeEEEEeCcccCCCHHHHHHHHHHhHhcC----CCEEE
Q psy2427 38 TREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTR-HGVKFELFDKVRVEPTGDSFLEATKFVRSVQ----CDAFI 112 (660)
Q Consensus 38 ~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~-~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~----~D~II 112 (660)
+.+..+.++.++.+++.+|+...+++..-.+.+.+.+++ .|+++.+.++-+ |.-........... .-+||
T Consensus 62 L~~f~~~~~~~~v~~v~~vATsA~R~A~N~~~fl~~i~~~tG~~i~vIsG~e-----EA~l~~~gv~~~~~~~~~~~lvi 136 (315)
T 3mdq_A 62 LKKFRVILDEHAVVHVIATGTSAVRSGSNKQVLIDRIKKEVNIDVEVIDGAR-----EAELIFRGVQQAVPMEDHISLAM 136 (315)
T ss_dssp HHHHHHHHHHTTCCEEEEEECHHHHHCTTHHHHHHHHHHHHCCCEEECCHHH-----HHHHHHHHHHHHSCCTTCCEEEE
T ss_pred HHHHHHHHHHcCCCEEEEEeeHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHH-----HHHHHHHHHHhcCCCCCCCEEEE
Confidence 445556667788899999998887765434555555553 499998876521 11111111112222 23899
Q ss_pred EecCchh
Q psy2427 113 AVGGGSV 119 (660)
Q Consensus 113 avGGGsv 119 (660)
=|||||+
T Consensus 137 DIGGGSt 143 (315)
T 3mdq_A 137 DIGGGSV 143 (315)
T ss_dssp EECSSCE
T ss_pred EeCCCce
Confidence 9999997
No 123
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=59.30 E-value=33 Score=33.68 Aligned_cols=86 Identities=5% Similarity=0.104 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcCCCEEEEEECccccc--cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh-c----CCCE
Q psy2427 38 TREVGMDMVNMKAQRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS-V----QCDA 110 (660)
Q Consensus 38 ~~~l~~~l~~~g~~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~-~----~~D~ 110 (660)
...+.++|.+.|.+|+.+++++.-.. ....+-+++.|++.|+.+.++ ..+.+.+...++++.+.+ . ++|+
T Consensus 119 ~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~a 195 (295)
T 3hcw_A 119 SENLTRHVIEQGVDELIFITEKGNFEVSKDRIQGFETVASQFNLDYQII---ETSNEREVILNYMQNLHTRLKDPNIKQA 195 (295)
T ss_dssp HHHHHHHHHHHCCSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCEEEEE---EECSCHHHHHHHHHHHHHHHTCTTSCEE
T ss_pred HHHHHHHHHHcCCccEEEEcCCccchhHHHHHHHHHHHHHHcCCCeeEE---eccCCHHHHHHHHHHHHhhcccCCCCcE
Confidence 34567788888999999998764221 123355777888999887643 235566665555554433 2 6899
Q ss_pred EEEecCchhhhHHHHH
Q psy2427 111 FIAVGGGSVIDTCKAA 126 (660)
Q Consensus 111 IIavGGGsviD~AK~~ 126 (660)
|++.....++-+.+++
T Consensus 196 i~~~~d~~A~g~~~al 211 (295)
T 3hcw_A 196 IISLDAMLHLAILSVL 211 (295)
T ss_dssp EEESSHHHHHHHHHHH
T ss_pred EEECChHHHHHHHHHH
Confidence 9987655555554444
No 124
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=58.72 E-value=18 Score=35.34 Aligned_cols=88 Identities=11% Similarity=0.056 Sum_probs=54.9
Q ss_pred HHHHHHHHhcCCCEEEEEECcccccc--chHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc--CCCEEEEe
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKL--APVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV--QCDAFIAV 114 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~--~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~D~IIav 114 (660)
..+.++|.+.|.+|+.++++..-... ...+-+.+.|++.|+.+....-...+.+.+...+.++.+.+. ++|+|++.
T Consensus 120 ~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 199 (292)
T 3k4h_A 120 REVAEYLISLGHKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAIMAT 199 (292)
T ss_dssp HHHHHHHHHTTCCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEEEES
T ss_pred HHHHHHHHHCCCceEEEEeCcccchhHHHHHHHHHHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCcEEEEc
Confidence 45677888889999999997642211 223556778888887643110112345566666555555443 68999998
Q ss_pred cCchhhhHHHHH
Q psy2427 115 GGGSVIDTCKAA 126 (660)
Q Consensus 115 GGGsviD~AK~~ 126 (660)
....++-+.+++
T Consensus 200 ~d~~a~g~~~al 211 (292)
T 3k4h_A 200 DDLIGLGVLSAL 211 (292)
T ss_dssp SHHHHHHHHHHH
T ss_pred ChHHHHHHHHHH
Confidence 776666555544
No 125
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=58.60 E-value=15 Score=35.98 Aligned_cols=87 Identities=10% Similarity=0.020 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCCCEEEEEECcccc--ccchHHHHHHHHHhCCCeEE---EEeCcccCC----CHHHHHHHHHHhHhcCCC
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLS--KLAPVKATLDSLTRHGVKFE---LFDKVRVEP----TGDSFLEATKFVRSVQCD 109 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~--~~~~~~~i~~~L~~~gi~~~---~~~~~~~~p----~~~~v~~~~~~~~~~~~D 109 (660)
..+.++|.+.|.+|+.+++++.-. .....+-+.+.+++.|+++. ++.. ..+- +.+...+.++.+.+.++|
T Consensus 111 ~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~ 189 (288)
T 2qu7_A 111 YIATKRVLESTCKEVGLLLANPNISTTIGRKNGYNKAISEFDLNVNPSLIHYS-DQQLGTNAQIYSGYEATKTLLSKGIK 189 (288)
T ss_dssp HHHHHHHHTSSCCCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEEC-CSSCSHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCcEEEEecCCCCCCHHHHHHHHHHHHHHcCCCCCcceEEec-cCCccccCCHHHHHHHHHHHHhcCCC
Confidence 346678888899999999976321 11223456678888887642 2200 1122 334444444433333899
Q ss_pred EEEEecCchhhhHHHHH
Q psy2427 110 AFIAVGGGSVIDTCKAA 126 (660)
Q Consensus 110 ~IIavGGGsviD~AK~~ 126 (660)
+|++.+...++-+.+++
T Consensus 190 ai~~~~d~~a~g~~~al 206 (288)
T 2qu7_A 190 GIVATNHLLLLGALQAI 206 (288)
T ss_dssp EEEECSHHHHHHHHHHH
T ss_pred EEEECCcHHHHHHHHHH
Confidence 99998776665555444
No 126
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=58.00 E-value=15 Score=31.11 Aligned_cols=59 Identities=14% Similarity=0.050 Sum_probs=37.0
Q ss_pred HhcCCCEEEEEECccccccchHH-HHHHHHHhCCCe-EEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEe
Q psy2427 46 VNMKAQRVCVMTDPHLSKLAPVK-ATLDSLTRHGVK-FELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAV 114 (660)
Q Consensus 46 ~~~g~~r~liVtd~~~~~~~~~~-~i~~~L~~~gi~-~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIav 114 (660)
.+...+|+++||+.+...+-.+. ++++.+++.|++ +.+. ..+..++... . .++|+||.-
T Consensus 14 ~~~~~~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~-----~~~~~~~~~~---~--~~~DlIi~t 74 (110)
T 3czc_A 14 GRGSMVKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESA-----SCSVGEAKGL---A--SNYDIVVAS 74 (110)
T ss_dssp ----CEEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEE-----EECHHHHHHH---G--GGCSEEEEE
T ss_pred cccCCcEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEE-----EeeHHHHhhc---c--CCCcEEEEC
Confidence 33334789999999876554555 899999999987 5432 2344444432 2 368988863
No 127
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=57.73 E-value=45 Score=31.85 Aligned_cols=84 Identities=12% Similarity=0.160 Sum_probs=51.5
Q ss_pred EEE--CcChHHH-HHHHHHhcCC--CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHH-HHHHHHhH
Q psy2427 31 IRI--GPGVTRE-VGMDMVNMKA--QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSF-LEATKFVR 104 (660)
Q Consensus 31 i~~--G~g~~~~-l~~~l~~~g~--~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v-~~~~~~~~ 104 (660)
+++ |.|...+ +-+.+.+.+. +-++|||++.-. .+++..++.|+.+..++.. .-.+.+.. .++.+.++
T Consensus 5 ~vl~SG~g~~~~~~l~~l~~~~~~~~i~~Vvs~~~~~------~~~~~A~~~gIp~~~~~~~-~~~~r~~~~~~~~~~l~ 77 (216)
T 2ywr_A 5 GVLVSGRGSNLQAIIDAIESGKVNASIELVISDNPKA------YAIERCKKHNVECKVIQRK-EFPSKKEFEERMALELK 77 (216)
T ss_dssp EEEECSCCHHHHHHHHHHHTTSSCEEEEEEEESCTTC------HHHHHHHHHTCCEEECCGG-GSSSHHHHHHHHHHHHH
T ss_pred EEEEeCCcHHHHHHHHHHHhCCCCCeEEEEEeCCCCh------HHHHHHHHcCCCEEEeCcc-cccchhhhhHHHHHHHH
Confidence 346 7775533 4444554333 446788875321 2344556679998765432 12233332 35678888
Q ss_pred hcCCCEEEEecCchhhh
Q psy2427 105 SVQCDAFIAVGGGSVID 121 (660)
Q Consensus 105 ~~~~D~IIavGGGsviD 121 (660)
+.++|+||.+|=|..+-
T Consensus 78 ~~~~Dliv~a~y~~il~ 94 (216)
T 2ywr_A 78 KKGVELVVLAGFMRILS 94 (216)
T ss_dssp HTTCCEEEESSCCSCCC
T ss_pred hcCCCEEEEeCchhhCC
Confidence 99999999999887764
No 128
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=57.69 E-value=47 Score=32.06 Aligned_cols=81 Identities=16% Similarity=0.166 Sum_probs=50.2
Q ss_pred CcChHHH-HHHHHHhc--CCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHH-HHHHHHhHhcCCC
Q psy2427 34 GPGVTRE-VGMDMVNM--KAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSF-LEATKFVRSVQCD 109 (660)
Q Consensus 34 G~g~~~~-l~~~l~~~--g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v-~~~~~~~~~~~~D 109 (660)
|.|...+ +-+.+.+. +.+-++|||++.- . .+++..++.|+.+..++... -.+.+.. .++.+.+++.++|
T Consensus 31 G~g~~~~~~l~~l~~~~~~~~I~~Vvt~~~~--~----~~~~~A~~~gIp~~~~~~~~-~~~r~~~~~~~~~~l~~~~~D 103 (229)
T 3auf_A 31 GSGTNLQAILDGCREGRIPGRVAVVISDRAD--A----YGLERARRAGVDALHMDPAA-YPSRTAFDAALAERLQAYGVD 103 (229)
T ss_dssp SCCHHHHHHHHHHHTTSSSEEEEEEEESSTT--C----HHHHHHHHTTCEEEECCGGG-SSSHHHHHHHHHHHHHHTTCS
T ss_pred CCcHHHHHHHHHHHhCCCCCeEEEEEcCCCc--h----HHHHHHHHcCCCEEEECccc-ccchhhccHHHHHHHHhcCCC
Confidence 7776543 44444432 3345678887531 1 23455667899987654321 2333333 4567888899999
Q ss_pred EEEEecCchhhh
Q psy2427 110 AFIAVGGGSVID 121 (660)
Q Consensus 110 ~IIavGGGsviD 121 (660)
+||.+|=|.++-
T Consensus 104 liv~agy~~IL~ 115 (229)
T 3auf_A 104 LVCLAGYMRLVR 115 (229)
T ss_dssp EEEESSCCSCCC
T ss_pred EEEEcChhHhCC
Confidence 999999887764
No 129
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=57.35 E-value=14 Score=40.77 Aligned_cols=56 Identities=18% Similarity=0.248 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCC
Q psy2427 92 TGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSG 166 (660)
Q Consensus 92 ~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~g 166 (660)
+.+..+++++.+++.++|.+|.|||--.++.|..++.....- ...+|+|.||-|.-
T Consensus 151 ~~e~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~-------------------~~~i~vIGiPkTID 206 (555)
T 2f48_A 151 TEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKN-------------------GENIQVIGVPKTID 206 (555)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHHHHT-------------------TCCCEEEEEEEETT
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCcHHHHHHHHHHHHHHh-------------------CCCCcEEEeccccC
Confidence 567889999999999999999999999999998887654310 01189999999973
No 130
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=56.92 E-value=36 Score=32.39 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=50.9
Q ss_pred ECcChHHH-HHHHHHhc--CCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHH-HHHHHHhHhcCC
Q psy2427 33 IGPGVTRE-VGMDMVNM--KAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSF-LEATKFVRSVQC 108 (660)
Q Consensus 33 ~G~g~~~~-l~~~l~~~--g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v-~~~~~~~~~~~~ 108 (660)
+|.|...+ +-+.+.+. +.+-++|||++.-. .+++..++.|+.+..++. ....+.+.. .+..+.+++.++
T Consensus 11 sG~g~~~~~~l~~l~~~~l~~~I~~Vit~~~~~------~v~~~A~~~gIp~~~~~~-~~~~~~~~~~~~~~~~l~~~~~ 83 (212)
T 3av3_A 11 SGSGTNFQAIVDAAKRGDLPARVALLVCDRPGA------KVIERAARENVPAFVFSP-KDYPSKAAFESEILRELKGRQI 83 (212)
T ss_dssp CSSCHHHHHHHHHHHTTCCCEEEEEEEESSTTC------HHHHHHHHTTCCEEECCG-GGSSSHHHHHHHHHHHHHHTTC
T ss_pred ECCcHHHHHHHHHHHhCCCCCeEEEEEeCCCCc------HHHHHHHHcCCCEEEeCc-ccccchhhhHHHHHHHHHhcCC
Confidence 57775533 34444443 44456788875311 355566778999876543 222333333 356788889999
Q ss_pred CEEEEecCchhhh
Q psy2427 109 DAFIAVGGGSVID 121 (660)
Q Consensus 109 D~IIavGGGsviD 121 (660)
|+||.+|=|..+-
T Consensus 84 Dliv~a~y~~il~ 96 (212)
T 3av3_A 84 DWIALAGYMRLIG 96 (212)
T ss_dssp CEEEESSCCSCCC
T ss_pred CEEEEchhhhhCC
Confidence 9999999887653
No 131
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=56.74 E-value=35 Score=31.55 Aligned_cols=58 Identities=21% Similarity=0.162 Sum_probs=41.3
Q ss_pred HHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc-CCCEEEEecCchhh--hHHHHHH
Q psy2427 68 KATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV-QCDAFIAVGGGSVI--DTCKAAN 127 (660)
Q Consensus 68 ~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~-~~D~IIavGGGsvi--D~AK~~a 127 (660)
.-+.+.|++.|+++..+.-++. +.+.+.+.++.+.+. ++|+||--||-++. |..+-+-
T Consensus 43 ~~L~~~l~~~G~~v~~~~iv~D--d~~~I~~al~~a~~~~~~DlVittGG~s~g~~D~t~eal 103 (178)
T 2pjk_A 43 DIIKQLLIENGHKIIGYSLVPD--DKIKILKAFTDALSIDEVDVIISTGGTGYSPTDITVETI 103 (178)
T ss_dssp HHHHHHHHHTTCEEEEEEEECS--CHHHHHHHHHHHHTCTTCCEEEEESCCSSSTTCCHHHHH
T ss_pred HHHHHHHHHCCCEEEEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcchHHHH
Confidence 5577889999998775544332 367777777776654 59999999998775 5555443
No 132
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=56.42 E-value=57 Score=26.86 Aligned_cols=65 Identities=15% Similarity=0.100 Sum_probs=43.9
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
.|++||-|.... .+.+...|++.|+.+..+. +..++.+.+++..+|+||- +.+...+++.+.+.
T Consensus 4 ~~ilivdd~~~~----~~~l~~~L~~~g~~v~~~~---------~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~ 70 (127)
T 3i42_A 4 QQALIVEDYQAA----AETFKELLEMLGFQADYVM---------SGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLR 70 (127)
T ss_dssp EEEEEECSCHHH----HHHHHHHHHHTTEEEEEES---------SHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHH
T ss_pred ceEEEEcCCHHH----HHHHHHHHHHcCCCEEEEC---------CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 477888765532 2567778888887665543 2356667777788998875 46777777777664
Q ss_pred h
Q psy2427 128 L 128 (660)
Q Consensus 128 ~ 128 (660)
.
T Consensus 71 ~ 71 (127)
T 3i42_A 71 A 71 (127)
T ss_dssp H
T ss_pred h
Confidence 4
No 133
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=56.32 E-value=40 Score=31.37 Aligned_cols=64 Identities=11% Similarity=0.116 Sum_probs=44.3
Q ss_pred EEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhH
Q psy2427 52 RVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLY 129 (660)
Q Consensus 52 r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~ 129 (660)
|++||-|.... .+.+...|+..|+.+..+. +..++.+.++...+|+|| +.+.+-+++.+.+...
T Consensus 2 ~ilivdd~~~~----~~~l~~~L~~~g~~v~~~~---------~~~~al~~l~~~~~dlvi-lp~~~g~~~~~~lr~~ 65 (223)
T 2hqr_A 2 RVLLIEKNSVL----GGEIEKGLNVKGFMADVTE---------SLEDGEYLMDIRNYDLVM-VSDKNALSFVSRIKEK 65 (223)
T ss_dssp CEEEECSCHHH----HHHHHHHHGGGTCCEEEES---------SHHHHHHHHTTSCCSEEE-ECCTTHHHHHHHHHHH
T ss_pred EEEEEcCCHHH----HHHHHHHHHHCCcEEEEEC---------CHHHHHHHHhcCCCCEEE-eCCCCHHHHHHHHHhC
Confidence 56777665532 2556777877787765442 245566677778899999 8888888888877544
No 134
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=56.30 E-value=12 Score=34.35 Aligned_cols=51 Identities=16% Similarity=0.173 Sum_probs=37.4
Q ss_pred HHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhh
Q psy2427 68 KATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVID 121 (660)
Q Consensus 68 ~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD 121 (660)
.-+.+.|++.|+++..+.-+. +- +.+.+.++.+.+.++|+||--||-|+.+
T Consensus 30 ~~l~~~l~~~G~~v~~~~iv~-Dd--~~i~~al~~a~~~~~DlVittGG~s~g~ 80 (164)
T 3pzy_A 30 PIITEWLAQQGFSSAQPEVVA-DG--SPVGEALRKAIDDDVDVILTSGGTGIAP 80 (164)
T ss_dssp HHHHHHHHHTTCEECCCEEEC-SS--HHHHHHHHHHHHTTCSEEEEESCCSSST
T ss_pred HHHHHHHHHCCCEEEEEEEeC-CH--HHHHHHHHHHHhCCCCEEEECCCCCCCC
Confidence 567888999998876443332 32 7777777776656799999999988764
No 135
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=56.07 E-value=52 Score=32.46 Aligned_cols=86 Identities=14% Similarity=0.130 Sum_probs=53.2
Q ss_pred HHHHHHHHhc--CCCEEEEEECcc-cc-ccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc--CCCEEE
Q psy2427 39 REVGMDMVNM--KAQRVCVMTDPH-LS-KLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV--QCDAFI 112 (660)
Q Consensus 39 ~~l~~~l~~~--g~~r~liVtd~~-~~-~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~D~II 112 (660)
..+.++|.+. |.+|+.++++.. .. .....+-+++.|++.|+++... ...+.+.+...+.++.+.+. ++|+|+
T Consensus 110 ~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~ 187 (313)
T 2h3h_A 110 YTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEIVDI--LNDEEDGARAVSLAEAALNAHPDLDAFF 187 (313)
T ss_dssp HHHHHHHHHHHTSCSEEEEEESCSSCHHHHHHHHHHHHHHTTSSCEEEEE--EECSSCHHHHHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHHcCCCCEEEEEECCCCCccHHHHHHHHHHHhcCCCCEEEEe--ecCCCCHHHHHHHHHHHHHHCcCceEEE
Confidence 3466777776 889999999863 21 1123345677888888876421 12344555555555544332 579999
Q ss_pred EecCchhhhHHHHH
Q psy2427 113 AVGGGSVIDTCKAA 126 (660)
Q Consensus 113 avGGGsviD~AK~~ 126 (660)
+.....++-+.+++
T Consensus 188 ~~~d~~a~g~~~al 201 (313)
T 2h3h_A 188 GVYAYNGPAQALVV 201 (313)
T ss_dssp ECSTTHHHHHHHHH
T ss_pred EcCCCccHHHHHHH
Confidence 98877766555544
No 136
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=55.28 E-value=18 Score=36.39 Aligned_cols=88 Identities=3% Similarity=-0.026 Sum_probs=51.7
Q ss_pred HHHHHHHHhcCCCEEEEEECccccc--cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG 116 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG 116 (660)
..+.++|.+.|.+|+.+++++.-.. ....+-+.+.|++.|+++....-...+.+.+...+.++.+.+.++|.|++...
T Consensus 169 ~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ai~~~~d 248 (332)
T 2o20_A 169 YQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEGNYSYEQGKALAERLLERGATSAVVSHD 248 (332)
T ss_dssp HHHHHHHHHTTCSSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEECSCCSHHHHHHHHHHHHHTTCCEEEESCH
T ss_pred HHHHHHHHHCCCCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHhccCCCEEEECCh
Confidence 3466788888999999998764211 11234467788888876431000122345555545544433338999999766
Q ss_pred chhhhHHHHH
Q psy2427 117 GSVIDTCKAA 126 (660)
Q Consensus 117 GsviD~AK~~ 126 (660)
..++-+.+++
T Consensus 249 ~~A~g~~~al 258 (332)
T 2o20_A 249 TVAVGLLSAM 258 (332)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555444443
No 137
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=55.03 E-value=25 Score=36.67 Aligned_cols=84 Identities=10% Similarity=-0.009 Sum_probs=54.5
Q ss_pred HHHHHHHhcCCCEEEEE------ECccccccchHHHHHHHHHh-CCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEE
Q psy2427 40 EVGMDMVNMKAQRVCVM------TDPHLSKLAPVKATLDSLTR-HGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFI 112 (660)
Q Consensus 40 ~l~~~l~~~g~~r~liV------td~~~~~~~~~~~i~~~L~~-~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~II 112 (660)
.+.++++.+|.+++.|| ++..-... ....+.+.+++ .|+++... ... .++..+....++.+++ ++|+||
T Consensus 136 a~~~~l~~~~w~~v~ii~~~d~~~~~~~~g~-~~~~~~~~~~~~~g~~v~~~-~~~-~~~~~d~~~~l~~i~~-~~~viv 211 (435)
T 1dp4_A 136 FVTALHRRLGWEHQALVLYADRLGDDRPCFF-IVEGLYMRVRERLNITVNHQ-EFV-EGDPDHYPKLLRAVRR-KGRVIY 211 (435)
T ss_dssp HHHHHHHHHTCCSEEEEEEECCSSSCCHHHH-HHHHHHHHHHHHHCCEEEEE-EEC-TTCGGGHHHHHHHHHH-HCSEEE
T ss_pred HHHHHHHHCCCcEEEEEEEccCCCCcchHHH-HHHHHHHHHHhhcCeEEEEE-EEe-cCchhhHHHHHHHHHh-hCceEE
Confidence 35567778888999998 54332222 33667788877 89887532 222 2345567777777777 899999
Q ss_pred EecCchhhhHHHHHHhH
Q psy2427 113 AVGGGSVIDTCKAANLY 129 (660)
Q Consensus 113 avGGGsviD~AK~~a~~ 129 (660)
..|.+. |+..++...
T Consensus 212 ~~~~~~--~~~~~~~~a 226 (435)
T 1dp4_A 212 ICSSPD--AFRNLMLLA 226 (435)
T ss_dssp EESCHH--HHHHHHHHH
T ss_pred EecChH--HHHHHHHHH
Confidence 987654 555555433
No 138
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=54.91 E-value=79 Score=30.57 Aligned_cols=65 Identities=17% Similarity=0.101 Sum_probs=42.6
Q ss_pred CEEEEEECcc--ccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 51 QRVCVMTDPH--LSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 51 ~r~liVtd~~--~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
+++.+|.... .+-....+-+.+.+++.|+.+.++.. +.+.+.-.+..+.+...++|.||-.+...
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 75 (285)
T 3c3k_A 9 GMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNT---ESDLARSRSCLTLLSGKMVDGVITMDALS 75 (285)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHTHHHHTTCCSEEEECCCGG
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 4566665421 11122446677788888998877642 34555666677788888999999887643
No 139
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=54.78 E-value=20 Score=35.20 Aligned_cols=88 Identities=16% Similarity=0.117 Sum_probs=53.0
Q ss_pred HHHHHHHHhcCCCEEEEEECccccc--cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh-c---CCCEEE
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS-V---QCDAFI 112 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~-~---~~D~II 112 (660)
..+.++|.+.|.+|+.+++++.-.. ....+-+.+.+++.|+.+....-...+.+.+...+.++.+.+ . ++|+|+
T Consensus 114 ~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~ 193 (287)
T 3bbl_A 114 RQAVEYLIGRGHRRIAILAWPEDSRVGNDRLQGYLEAMQTAQLPIETGYILRGEGTFEVGRAMTLHLLDLSPERRPTAIM 193 (287)
T ss_dssp HHHHHHHHHHTCCCEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSCTTTSCSEEE
T ss_pred HHHHHHHHHCCCCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHHhhCCCCCCcEEE
Confidence 4466778778999999998763211 112345677888888754210001224456655555555544 2 689999
Q ss_pred EecCchhhhHHHHH
Q psy2427 113 AVGGGSVIDTCKAA 126 (660)
Q Consensus 113 avGGGsviD~AK~~ 126 (660)
+.....++-+.+++
T Consensus 194 ~~~d~~a~g~~~al 207 (287)
T 3bbl_A 194 TLNDTMAIGAMAAA 207 (287)
T ss_dssp ESSHHHHHHHHHHH
T ss_pred ECCcHHHHHHHHHH
Confidence 98776665555544
No 140
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=54.68 E-value=22 Score=34.97 Aligned_cols=88 Identities=16% Similarity=0.103 Sum_probs=53.8
Q ss_pred HHHHHHHHhcCCCEEEEEECcc-cc--ccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh--cCCCEEEE
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPH-LS--KLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS--VQCDAFIA 113 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~-~~--~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~IIa 113 (660)
..+.++|.+.|.+|+.+|+++. -. .....+-+++.|++.|+++....-...+.+.+...+.++.+.+ .++|+|++
T Consensus 122 ~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~ 201 (289)
T 2fep_A 122 YDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTAILS 201 (289)
T ss_dssp HHHHHHHHHTTCSSEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCCGGGEEECCSCHHHHHHHHHHHTTSSSCCSEEEE
T ss_pred HHHHHHHHHCCCCeEEEEeCCccccccHHHHHHHHHHHHHHcCCCCChheEeeCCCCHHHHHHHHHHHHcCCCCCCEEEE
Confidence 4467788888999999999864 21 1123355777888888764310001224455555555555443 36899999
Q ss_pred ecCchhhhHHHHH
Q psy2427 114 VGGGSVIDTCKAA 126 (660)
Q Consensus 114 vGGGsviD~AK~~ 126 (660)
.....++-+.+++
T Consensus 202 ~~d~~A~g~~~al 214 (289)
T 2fep_A 202 ATDEMALGIIHAA 214 (289)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 8776665555544
No 141
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=54.63 E-value=18 Score=35.37 Aligned_cols=88 Identities=18% Similarity=0.172 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCCCEEEEEECcccc--ccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh--cCCCEEEEe
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLS--KLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS--VQCDAFIAV 114 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~--~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~IIav 114 (660)
..+.++|.+.|.+|+.+|++..-. .....+-+.+.+++.|+++........+.+.+...+.++.+.+ .++|+|++.
T Consensus 128 ~~a~~~l~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 207 (296)
T 3brq_A 128 FNAVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALVAS 207 (296)
T ss_dssp HHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGGEECCCSSHHHHHHHHHHHHTC--CCSEEEES
T ss_pred HHHHHHHHHCCCceEEEEcCCCCCccHHHHHHHHHHHHHHcCCCCChhhEEeCCCChhHHHHHHHHHHhCCCCCCEEEEC
Confidence 346677788898999999876321 1112345677888888764310001223455555555555433 468999998
Q ss_pred cCchhhhHHHHH
Q psy2427 115 GGGSVIDTCKAA 126 (660)
Q Consensus 115 GGGsviD~AK~~ 126 (660)
....++-+.+++
T Consensus 208 ~d~~a~g~~~al 219 (296)
T 3brq_A 208 NDDMAIGAMKAL 219 (296)
T ss_dssp SHHHHHHHHHHH
T ss_pred ChHHHHHHHHHH
Confidence 777666555544
No 142
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=54.15 E-value=68 Score=27.59 Aligned_cols=65 Identities=8% Similarity=0.037 Sum_probs=44.2
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
.|++||.|.... .+.+...|++.|+.+..+. +..++.+.+++..+|+||- +.+..-+++.+.+.
T Consensus 15 ~~ILivdd~~~~----~~~l~~~L~~~g~~v~~~~---------~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~ 81 (153)
T 3hv2_A 15 PEILLVDSQEVI----LQRLQQLLSPLPYTLHFAR---------DATQALQLLASREVDLVISAAHLPQMDGPTLLARIH 81 (153)
T ss_dssp CEEEEECSCHHH----HHHHHHHHTTSSCEEEEES---------SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred ceEEEECCCHHH----HHHHHHHhcccCcEEEEEC---------CHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHH
Confidence 578888776532 3567788888887766543 2455666677788998875 46777777777664
Q ss_pred h
Q psy2427 128 L 128 (660)
Q Consensus 128 ~ 128 (660)
.
T Consensus 82 ~ 82 (153)
T 3hv2_A 82 Q 82 (153)
T ss_dssp H
T ss_pred h
Confidence 4
No 143
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=54.12 E-value=17 Score=35.20 Aligned_cols=88 Identities=9% Similarity=0.010 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCCCEEEEEECcc-c---ccc---chHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc--CCC
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPH-L---SKL---APVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV--QCD 109 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~-~---~~~---~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~D 109 (660)
..+.++|.+.|.+|+.+|++.. - ... ...+-+.+.+++.|+++....-...+.+.+...+.++.+.+. ++|
T Consensus 103 ~~a~~~L~~~G~~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (276)
T 2h0a_A 103 RLAGAYLARFPGPIFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPFSPDRLYITRHSQEGGRLALRHFLEKASPPL 182 (276)
T ss_dssp HHHHHHHTTSSSCEEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCCCGGGEEEECSSHHHHHHHHHHHHTTCCSSE
T ss_pred HHHHHHHHHcCCCeEEEEecCcccccccchhHHHHHHHHHHHHHHcCCCCChHHeeecCCChHHHHHHHHHHHhCCCCCC
Confidence 4467888888999999998764 2 111 123456778888887542100011244566665665555443 479
Q ss_pred EEEEecCchhhhHHHHH
Q psy2427 110 AFIAVGGGSVIDTCKAA 126 (660)
Q Consensus 110 ~IIavGGGsviD~AK~~ 126 (660)
+|++.....++-+.+++
T Consensus 183 ai~~~~d~~a~g~~~al 199 (276)
T 2h0a_A 183 NVFAGADQVALGVLEEA 199 (276)
T ss_dssp EEECSSHHHHHHHHHHH
T ss_pred EEEECCcHHHHHHHHHH
Confidence 99977665555554444
No 144
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=54.06 E-value=11 Score=38.86 Aligned_cols=89 Identities=15% Similarity=0.021 Sum_probs=54.0
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEE----------EEe--------Ccc-cCCCHHHHHHH
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE----------LFD--------KVR-VEPTGDSFLEA 99 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~----------~~~--------~~~-~~p~~~~v~~~ 99 (660)
..+.++++.+|.+++.+|++...+.....+.+.+.+++.|+++. .|. .+. ..+...+....
T Consensus 128 ~a~~~~~~~~gw~~v~ii~~d~~~G~~~~~~~~~~~~~~g~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~d~~~~ 207 (384)
T 3qek_A 128 LVWFEMMRLFNWNHVILIVSDDHEGRAAQKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEPGTKNLTAL 207 (384)
T ss_dssp HHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHC--------------CCSCCCCCCCCEEEEEEEECTTCSCCHHH
T ss_pred HHHHHHHHHcCCeEEEEEEEcCcccHHHHHHHHHHHHhccCccccccccccceeeeccccCcccceecccCCchhhHHHH
Confidence 34667778889999999987665544456788888888886431 010 011 12334466677
Q ss_pred HHHhHhcCCCEEEEecCchhhhHHHHHHhH
Q psy2427 100 TKFVRSVQCDAFIAVGGGSVIDTCKAANLY 129 (660)
Q Consensus 100 ~~~~~~~~~D~IIavGGGsviD~AK~~a~~ 129 (660)
+..++..++|+||..|.+ -|+..++...
T Consensus 208 l~~i~~~~~~vii~~~~~--~~~~~~~~~a 235 (384)
T 3qek_A 208 LLEAKELEARVIILSASE--DDATAVYKSA 235 (384)
T ss_dssp HHHHHTSSCCEEEEECCH--HHHHHHHHHH
T ss_pred HHHHHhcCCcEEEEECCH--HHHHHHHHHH
Confidence 788888999999998755 4556555433
No 145
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=53.68 E-value=26 Score=34.37 Aligned_cols=87 Identities=10% Similarity=0.052 Sum_probs=56.0
Q ss_pred HHHHHHHHhcCCCEEEEEECccccc-cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh--cCCCEEEEec
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSK-LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS--VQCDAFIAVG 115 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~-~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~IIavG 115 (660)
..+.++|.+.|.+|+.+++++.... ....+-+++.|++.|+.+.. ..+..+.+.+...+.++.+.+ .++|+|++..
T Consensus 115 ~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 193 (289)
T 3k9c_A 115 TLAVDHLTELGHRNIAHIDGADAPGGADRRAGFLAAMDRHGLSASA-TVVTGGTTETEGAEGMHTLLEMPTPPTAVVAFN 193 (289)
T ss_dssp HHHHHHHHHTTCCSEEEECCTTSTTHHHHHHHHHHHHHHTTCGGGE-EEECCCSSHHHHHHHHHHHHTSSSCCSEEEESS
T ss_pred HHHHHHHHHCCCCcEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCc-cEEECCCCHHHHHHHHHHHHcCCCCCCEEEECC
Confidence 4467788888999999999865321 11234567788888876321 112345666666666665544 4689999987
Q ss_pred CchhhhHHHHH
Q psy2427 116 GGSVIDTCKAA 126 (660)
Q Consensus 116 GGsviD~AK~~ 126 (660)
...++-+.+++
T Consensus 194 d~~A~g~~~al 204 (289)
T 3k9c_A 194 DRCATGVLDLL 204 (289)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 76666555544
No 146
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=53.39 E-value=91 Score=31.89 Aligned_cols=73 Identities=15% Similarity=0.213 Sum_probs=45.2
Q ss_pred HHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeC--cccCCC----------HHHHHHHHHHhHhcC
Q psy2427 40 EVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDK--VRVEPT----------GDSFLEATKFVRSVQ 107 (660)
Q Consensus 40 ~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~--~~~~p~----------~~~v~~~~~~~~~~~ 107 (660)
.|.++|++.| .++.+|+++.-.+ . +.+++.|+++..++. ...... ...+.++.+.+++.+
T Consensus 21 ala~~L~~~g-~~V~~vg~~~g~e----~---~~v~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 92 (365)
T 3s2u_A 21 ACAREFQARG-YAVHWLGTPRGIE----N---DLVPKAGLPLHLIQVSGLRGKGLKSLVKAPLELLKSLFQALRVIRQLR 92 (365)
T ss_dssp HHHHHHHHTT-CEEEEEECSSSTH----H---HHTGGGTCCEEECC--------------CHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCC-CEEEEEECCchHh----h---chhhhcCCcEEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3678888888 6888888765211 1 234556777654431 111111 234556677889999
Q ss_pred CCEEEEecCchhh
Q psy2427 108 CDAFIAVGGGSVI 120 (660)
Q Consensus 108 ~D~IIavGGGsvi 120 (660)
+|+||+.||-...
T Consensus 93 PDvVi~~g~~~s~ 105 (365)
T 3s2u_A 93 PVCVLGLGGYVTG 105 (365)
T ss_dssp CSEEEECSSSTHH
T ss_pred CCEEEEcCCcchH
Confidence 9999999987654
No 147
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}
Probab=53.36 E-value=23 Score=36.49 Aligned_cols=77 Identities=17% Similarity=0.170 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHh-CCCeEEEEeCcccCCCHHHHHHHHHHhHhc------CCCE
Q psy2427 38 TREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTR-HGVKFELFDKVRVEPTGDSFLEATKFVRSV------QCDA 110 (660)
Q Consensus 38 ~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~-~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~------~~D~ 110 (660)
+.+..+.++.++.+++.+|+...+++..-.+.+.+.+++ .|+++.+.++-+ |.-.......... +.-+
T Consensus 75 L~~f~~~~~~~~v~~v~~vATsA~R~A~N~~~fl~~v~~~tGi~ieVIsG~e-----EA~l~~~gv~~~~~~~~~~~~~l 149 (343)
T 3cer_A 75 AREFAGVIAEHPIDGLRFVATSATRDAENREEFEDEIERILGVRPEVIPGTE-----EADLSFLGATSVVNRDDLPAPYL 149 (343)
T ss_dssp HHHHHHHHTTSCCSEEEEEECHHHHHCTTHHHHHHHHHHHHSSCCEECCHHH-----HHHHHHHHHHSSCCTTTCCSSEE
T ss_pred HHHHHHHHHHCCCCeEEEEecHHHHcCcCHHHHHHHHHHHHCCCEEEeCHHH-----HHHHHHHHHHhhCccccccCCEE
Confidence 344556667788889999998887765434555555554 489888876521 1111111111111 2238
Q ss_pred EEEecCchh
Q psy2427 111 FIAVGGGSV 119 (660)
Q Consensus 111 IIavGGGsv 119 (660)
||=|||||+
T Consensus 150 viDIGGGSt 158 (343)
T 3cer_A 150 VVDLGGGST 158 (343)
T ss_dssp EEEECSSCE
T ss_pred EEEeCCCce
Confidence 999999996
No 148
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=53.36 E-value=84 Score=25.79 Aligned_cols=63 Identities=13% Similarity=0.025 Sum_probs=41.9
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAA 126 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~ 126 (660)
+|++||-|.... .+.+...|++.|+++..+. +..++.+.+++.++|+||- +.|..-+++.+.+
T Consensus 3 ~~ILivdd~~~~----~~~l~~~l~~~g~~v~~~~---------~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l 68 (122)
T 3gl9_A 3 KKVLLVDDSAVL----RKIVSFNLKKEGYEVIEAE---------NGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKL 68 (122)
T ss_dssp CEEEEECSCHHH----HHHHHHHHHHTTCEEEEES---------SHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHH
T ss_pred ceEEEEeCCHHH----HHHHHHHHHHCCcEEEEeC---------CHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHH
Confidence 578888776532 2456777888888766543 2355667777888998875 4566666666655
No 149
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=53.09 E-value=87 Score=32.04 Aligned_cols=78 Identities=12% Similarity=0.037 Sum_probs=47.8
Q ss_pred HHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeC------------------------cccCC----
Q psy2427 40 EVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDK------------------------VRVEP---- 91 (660)
Q Consensus 40 ~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~------------------------~~~~p---- 91 (660)
.|.+.|.+.| ..+.+++.+.. .+.+...|+.+..+.. .....
T Consensus 39 ~la~~L~~~G-heV~v~~~~~~---------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (412)
T 3otg_A 39 PLATAARAAG-HEVTFATGEGF---------AGTLRKLGFEPVATGMPVFDGFLAALRIRFDTDSPEGLTPEQLSELPQI 108 (412)
T ss_dssp HHHHHHHHTT-CEEEEEECGGG---------HHHHHHTTCEEEECCCCHHHHHHHHHHHHHSCSCCTTCCHHHHTTSHHH
T ss_pred HHHHHHHHCC-CEEEEEccHHH---------HHHHHhcCCceeecCcccccchhhhhhhhhcccCCccCChhHhhHHHHH
Confidence 4677888888 78888887532 2345566888776542 00000
Q ss_pred ------CHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHh
Q psy2427 92 ------TGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYY 130 (660)
Q Consensus 92 ------~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~ 130 (660)
....+.++.+.+++.++|+||+-+..-. +..++...
T Consensus 109 ~~~~~~~~~~~~~l~~~l~~~~pDvVv~~~~~~~---~~~aa~~~ 150 (412)
T 3otg_A 109 VFGRVIPQRVFDELQPVIERLRPDLVVQEISNYG---AGLAALKA 150 (412)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHCCSEEEEETTCHH---HHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHhcCCCEEEECchhhH---HHHHHHHc
Confidence 1112367777888899999999865433 33444444
No 150
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Probab=52.96 E-value=30 Score=37.78 Aligned_cols=78 Identities=15% Similarity=0.158 Sum_probs=48.8
Q ss_pred hHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHh-CCCeEEEEeCcccCCCHHHHHHHHHHhHhc--CCCEEEE
Q psy2427 37 VTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTR-HGVKFELFDKVRVEPTGDSFLEATKFVRSV--QCDAFIA 113 (660)
Q Consensus 37 ~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~-~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~D~IIa 113 (660)
++.+..+.++.++..++.+|+...+++..-.+.+.+..++ .|+++.+.++-+ +..+ ......... .-.+||=
T Consensus 72 ~L~~F~~~~~~~~v~~v~~vATsA~R~A~N~~~fl~~i~~~tG~~ievIsG~E-EA~l----~~~gv~~~~~~~~~lvvD 146 (508)
T 3hi0_A 72 ALRRFHVLSEQAQAQKLYVLATAAAREAENGPDFIREAEAILGCEIEVLSGEK-EALY----SAYGVISGFYQPDGIAGD 146 (508)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTHHHHSTTHHHHHHHHHHHHTSCEEECCHHH-HHHH----HHHHHHHHSSSCEEEEEE
T ss_pred HHHHHHHHHHhCCCCeEEEEeeHHHHcCcCHHHHHHHHHHHHCCCeEEecHHH-HHHH----HHHHHHhcCCCCCeEEEE
Confidence 4556667778889999999999888765444555555553 499999876522 1111 111111111 1138999
Q ss_pred ecCchh
Q psy2427 114 VGGGSV 119 (660)
Q Consensus 114 vGGGsv 119 (660)
|||||+
T Consensus 147 IGGGSt 152 (508)
T 3hi0_A 147 LGGGSL 152 (508)
T ss_dssp ECSSCE
T ss_pred eCCCce
Confidence 999997
No 151
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=52.49 E-value=46 Score=31.83 Aligned_cols=86 Identities=6% Similarity=0.023 Sum_probs=53.5
Q ss_pred HHHHHHHHhcCCCEEEEEECccccc--cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHH-HhHhc--CCCEEEE
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATK-FVRSV--QCDAFIA 113 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~-~~~~~--~~D~IIa 113 (660)
..+.++|.+.|.+|+.++++..-.. ....+-+++.+++.|++.... ...+.+.+...+.++ .++.. ++|+|++
T Consensus 109 ~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~ 186 (272)
T 3o74_A 109 RQLAASLLSSAPRSIALIGARPELSVSQARAGGFDEALQGYTGEVRRY--QGEAFSRECGQRLMQQLIDDLGGLPDALVT 186 (272)
T ss_dssp HHHHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHHTTTCCSEEEEE--EESSSSHHHHHHHHHHHHHHHTSCCSEEEE
T ss_pred HHHHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHHHHHcCCChhee--ecCCCCHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 4467888888999999998754221 123355677788888875533 223445555555444 44444 4899999
Q ss_pred ecCchhhhHHHHH
Q psy2427 114 VGGGSVIDTCKAA 126 (660)
Q Consensus 114 vGGGsviD~AK~~ 126 (660)
.....++-+.+++
T Consensus 187 ~~d~~a~g~~~al 199 (272)
T 3o74_A 187 TSYVLLQGVFDTL 199 (272)
T ss_dssp SSHHHHHHHHHHH
T ss_pred eCchHHHHHHHHH
Confidence 8766655544443
No 152
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=52.27 E-value=62 Score=31.34 Aligned_cols=50 Identities=14% Similarity=0.124 Sum_probs=37.5
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
..+-+.+.+++.|+.+.++.. +.+.+...+..+.+...++|.||-++...
T Consensus 31 ~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~vdgiIi~~~~~ 80 (292)
T 3k4h_A 31 VIRGISSFAHVEGYALYMSTG---ETEEEIFNGVVKMVQGRQIGGIILLYSRE 80 (292)
T ss_dssp HHHHHHHHHHHTTCEEEECCC---CSHHHHHHHHHHHHHTTCCCEEEESCCBT
T ss_pred HHHHHHHHHHHcCCEEEEEeC---CCCHHHHHHHHHHHHcCCCCEEEEeCCCC
Confidence 446677788888998877542 34456667788888889999999887654
No 153
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=51.89 E-value=22 Score=34.75 Aligned_cols=89 Identities=10% Similarity=0.108 Sum_probs=56.0
Q ss_pred HHHHHHHHhcCCCEEEEEECccccc--cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh--cCCCEEEEe
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS--VQCDAFIAV 114 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~IIav 114 (660)
..+.++|.+.|.+|+.++++..-.. ....+-+.+.+++.|+.+....-+..+.+.+...+.++.+.+ .++|+|++.
T Consensus 116 ~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 195 (289)
T 3g85_A 116 EKASLLFAKKRYKSAAAILTESLNDAMDNRNKGFIETCHKNGIKISENHIIAAENSIHGGVDAAKKLMKLKNTPKALFCN 195 (289)
T ss_dssp HHHHHHHHHTTCCBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEEECCSSHHHHHHHHHHHTTSSSCCSEEEES
T ss_pred HHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhheeccCCCHHHHHHHHHHHHcCCCCCcEEEEc
Confidence 4567788888999999998764221 113355777888888764310011235566666666555544 358999998
Q ss_pred cCchhhhHHHHHH
Q psy2427 115 GGGSVIDTCKAAN 127 (660)
Q Consensus 115 GGGsviD~AK~~a 127 (660)
....++-+.+++.
T Consensus 196 ~d~~a~g~~~al~ 208 (289)
T 3g85_A 196 SDSIALGVISVLN 208 (289)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 7776666665553
No 154
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=51.44 E-value=29 Score=34.86 Aligned_cols=88 Identities=15% Similarity=0.068 Sum_probs=52.8
Q ss_pred HHHHHHHHhcCCCEEEEEECcc-cc--ccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc--CCCEEEE
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPH-LS--KLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV--QCDAFIA 113 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~-~~--~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~D~IIa 113 (660)
..+.++|.+.|.+|+.+++++. -. .....+-+.+.|++.|+++....-...+.+.+...+.++.+.+. ++|.|++
T Consensus 166 ~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~ 245 (332)
T 2hsg_A 166 FDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFV 245 (332)
T ss_dssp HHHHHHHHTTTCSCEEEEESCTTSHHHHTTHHHHHHHHHHTTTCCCCGGGEEECCSSHHHHHHHHHHHHHSSSCCSEEEE
T ss_pred HHHHHHHHHCCCCEEEEEeCCcccCccHHHHHHHHHHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHcCCCCCeEEEE
Confidence 4467788888999999999864 21 11233557778888887542100012244555555555554443 6899998
Q ss_pred ecCchhhhHHHHH
Q psy2427 114 VGGGSVIDTCKAA 126 (660)
Q Consensus 114 vGGGsviD~AK~~ 126 (660)
.....++-+.+++
T Consensus 246 ~nd~~A~g~~~al 258 (332)
T 2hsg_A 246 GTDEMALGVIHGA 258 (332)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CChHHHHHHHHHH
Confidence 7665555444443
No 155
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=50.95 E-value=29 Score=35.74 Aligned_cols=84 Identities=6% Similarity=-0.066 Sum_probs=54.4
Q ss_pred HHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchh
Q psy2427 40 EVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSV 119 (660)
Q Consensus 40 ~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 119 (660)
.+.++++.+|.+|+.||++..-+...+ .++.+.+.+.|+.+. +..+... .+....+..++..++|+||-.|.+
T Consensus 129 ~~~~~~~~~g~~~vaii~~~~~~g~~l-~~~~~~~~~~g~~v~-~~~~~~~---~d~~~~l~~i~~~~~~vii~~~~~-- 201 (393)
T 3om0_A 129 AVSRILKSFNYPSASLICAKAECLLRL-EELVRGFLISKETLS-VRMLDDS---RDPTPLLKEIRDDKVSTIIIDANA-- 201 (393)
T ss_dssp HHHHHHHHTTSCCEEEEESSTTHHHHT-HHHHHHHHHSSSCEE-EEECC-C---CCSHHHHHHHHHHTCSEEEEESCH--
T ss_pred HHHHHHHhCCCcEEEEEEeCchHHHHH-HHHHHhhhccCCeEE-EEecCCC---CCHHHHHHHHHhcCCeEEEEECCH--
Confidence 466777888999999999876544333 455556666787764 3333222 344556777788899999987654
Q ss_pred hhHHHHHHhHh
Q psy2427 120 IDTCKAANLYY 130 (660)
Q Consensus 120 iD~AK~~a~~~ 130 (660)
-|++.++....
T Consensus 202 ~~~~~~~~~a~ 212 (393)
T 3om0_A 202 SISHLVLRKAS 212 (393)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45666654443
No 156
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=50.86 E-value=1.3e+02 Score=28.95 Aligned_cols=64 Identities=9% Similarity=-0.128 Sum_probs=44.3
Q ss_pred CEEEEEECccc--cccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 51 QRVCVMTDPHL--SKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 51 ~r~liVtd~~~--~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
+++.+|..... +-....+-+.+.+++.|+.+.+++. +.+.+.-.+..+.+...++|.||-.+..
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 74 (293)
T 3l6u_A 9 NIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATS---QNSRISEREQILEFVHLKVDAIFITTLD 74 (293)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC---SSCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred cEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECC---CCCHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 46666654321 1122456677888889999887653 4566777788888888999999987654
No 157
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=50.85 E-value=62 Score=30.83 Aligned_cols=83 Identities=12% Similarity=0.173 Sum_probs=51.4
Q ss_pred EECcChHHHHHHHHHh-----cCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHH-HHHHHHHhHh
Q psy2427 32 RIGPGVTREVGMDMVN-----MKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDS-FLEATKFVRS 105 (660)
Q Consensus 32 ~~G~g~~~~l~~~l~~-----~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~-v~~~~~~~~~ 105 (660)
+|.+|.-..+-..+.. +..+-++||+++.- ..+++.-++.|+.+.+++... -.+.+. =.++.+.+++
T Consensus 7 vl~Sg~Gsnl~ali~~~~~~~l~~eI~~Visn~~~------a~v~~~A~~~gIp~~~~~~~~-~~~r~~~d~~~~~~l~~ 79 (211)
T 3p9x_A 7 IFASGSGTNAEAIIQSQKAGQLPCEVALLITDKPG------AKVVERVKVHEIPVCALDPKT-YPSKEAYEIEVVQQLKE 79 (211)
T ss_dssp EECCTTCHHHHHHHHHHHTTCCSSEEEEEEESCSS------SHHHHHHHTTTCCEEECCGGG-SSSHHHHHHHHHHHHHH
T ss_pred EEEeCCchHHHHHHHHHHcCCCCcEEEEEEECCCC------cHHHHHHHHcCCCEEEeChhh-cCchhhhHHHHHHHHHh
Confidence 4444433445444432 23355778887542 135556667899988764322 223333 3467788999
Q ss_pred cCCCEEEEecCchhhh
Q psy2427 106 VQCDAFIAVGGGSVID 121 (660)
Q Consensus 106 ~~~D~IIavGGGsviD 121 (660)
.++|+||.+|=|.++-
T Consensus 80 ~~~Dliv~agy~~Il~ 95 (211)
T 3p9x_A 80 KQIDFVVLAGYMRLVG 95 (211)
T ss_dssp TTCCEEEESSCCSCCC
T ss_pred cCCCEEEEeCchhhcC
Confidence 9999999999887764
No 158
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=50.67 E-value=25 Score=34.48 Aligned_cols=87 Identities=6% Similarity=-0.068 Sum_probs=47.8
Q ss_pred HHHHHHHHhcCC--CEEEEEE----Cccc--cccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHH-HHhHh-cCC
Q psy2427 39 REVGMDMVNMKA--QRVCVMT----DPHL--SKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEAT-KFVRS-VQC 108 (660)
Q Consensus 39 ~~l~~~l~~~g~--~r~liVt----d~~~--~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~-~~~~~-~~~ 108 (660)
..+.++|.+.|. +|+.+|+ +..- ......+-+++.|++.|+.+.+......+.+.+...+.+ +.++. .++
T Consensus 122 ~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 201 (304)
T 3gbv_A 122 YFAARMLMLLAVNDREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPACNILELNLHADLNIEDSRMLDDFFREHPDV 201 (304)
T ss_dssp HHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSEEEEEEEESSCSSCHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCCcEEEEeeecCCCHHHHHHHHHHHHHhCCCe
Confidence 446778888887 8999998 3321 111233556777887776433211111222222222222 23333 368
Q ss_pred CEEEEecCchhhhHHHHH
Q psy2427 109 DAFIAVGGGSVIDTCKAA 126 (660)
Q Consensus 109 D~IIavGGGsviD~AK~~ 126 (660)
|+|++.... ++-+.+++
T Consensus 202 ~ai~~~~d~-a~g~~~al 218 (304)
T 3gbv_A 202 KHGITFNSK-VYIIGEYL 218 (304)
T ss_dssp CEEEESSSC-THHHHHHH
T ss_pred EEEEEcCcc-hHHHHHHH
Confidence 999999988 76555554
No 159
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=50.64 E-value=21 Score=35.03 Aligned_cols=85 Identities=12% Similarity=0.231 Sum_probs=51.4
Q ss_pred HHHHHHHHhcCCCEEEEEECccccc--cchHHHHHHHHHhCCCeEE---EEeCcccCCCHHHHHHHHHHhHh--cCCCEE
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFE---LFDKVRVEPTGDSFLEATKFVRS--VQCDAF 111 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~---~~~~~~~~p~~~~v~~~~~~~~~--~~~D~I 111 (660)
..+.++|.+.|.+|+.+|+++.-.. ....+-+++.|++.|+++. ++. .+.+.+...+.++.+.+ .++|+|
T Consensus 117 ~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~ai 193 (290)
T 2rgy_A 117 ELAAATLIEHGHRKLAVISGPFTASDNVERLDGFFDELARHGIARDSVPLIE---SDFSPEGGYAATCQLLESKAPFTGL 193 (290)
T ss_dssp HHHHHHHHHTTCCSEEEEESCTTCHHHHHHHHHHHHHHHTTTCCGGGSCEEE---CCSSHHHHHHHHHHHHHHTCCCSEE
T ss_pred HHHHHHHHHCCCceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCcccEEe---cCCChhHHHHHHHHHHhCCCCCcEE
Confidence 3466778888999999999863211 1123446678888886532 221 23455555454444433 468999
Q ss_pred EEecCchhhhHHHHH
Q psy2427 112 IAVGGGSVIDTCKAA 126 (660)
Q Consensus 112 IavGGGsviD~AK~~ 126 (660)
++.....++-+.+++
T Consensus 194 ~~~~d~~A~g~~~al 208 (290)
T 2rgy_A 194 FCANDTMAVSALARF 208 (290)
T ss_dssp EESSHHHHHHHHHHH
T ss_pred EECCcHHHHHHHHHH
Confidence 997766665555544
No 160
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=50.14 E-value=74 Score=30.82 Aligned_cols=65 Identities=11% Similarity=-0.032 Sum_probs=45.1
Q ss_pred CEEEEEECcc--ccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 51 QRVCVMTDPH--LSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 51 ~r~liVtd~~--~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
+++.+|.... .+-....+-+.+.+++.|+.+.++.. +.+.+.-.+..+.+...++|.||-.+...
T Consensus 9 ~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 75 (291)
T 3egc_A 9 NVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANT---AEDIVREREAVGQFFERRVDGLILAPSEG 75 (291)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCCSS
T ss_pred cEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 4666665332 11122456778888889999887753 44566677888888889999999887655
No 161
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=50.00 E-value=91 Score=26.68 Aligned_cols=65 Identities=12% Similarity=0.082 Sum_probs=43.1
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
.+++||.+.... ...+...|+..|+.+..+.. ..++.+.+++..+|+||- +.+...+++.+.+.
T Consensus 8 ~~iLivdd~~~~----~~~l~~~L~~~g~~v~~~~~---------~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~ 74 (154)
T 2rjn_A 8 YTVMLVDDEQPI----LNSLKRLIKRLGCNIITFTS---------PLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVA 74 (154)
T ss_dssp CEEEEECSCHHH----HHHHHHHHHTTTCEEEEESC---------HHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHH
T ss_pred CeEEEEcCCHHH----HHHHHHHHHHcCCeEEEeCC---------HHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHH
Confidence 578888776532 35677788878887664432 345666777778998874 45666677777664
Q ss_pred h
Q psy2427 128 L 128 (660)
Q Consensus 128 ~ 128 (660)
.
T Consensus 75 ~ 75 (154)
T 2rjn_A 75 K 75 (154)
T ss_dssp H
T ss_pred H
Confidence 3
No 162
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=49.94 E-value=34 Score=32.59 Aligned_cols=85 Identities=9% Similarity=-0.005 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCCCEEEEEECc--ccc-ccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEec
Q psy2427 39 REVGMDMVNMKAQRVCVMTDP--HLS-KLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVG 115 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~--~~~-~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavG 115 (660)
..+.++|.+.|.+|+.++++. ... .....+-+.+.+++.|+....+ ..+.+.+...+.++.+.+.++|+|++..
T Consensus 104 ~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~al~~~g~~~~~~---~~~~~~~~~~~~~~~~l~~~~~ai~~~~ 180 (255)
T 1byk_A 104 KILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAA---LPGLAMKQGYENVAKVITPETTALLCAT 180 (255)
T ss_dssp HHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHHHHHTTCCCEEE---CCCSCHHHHHHHSGGGCCTTCCEEEESS
T ss_pred HHHHHHHHHcCCCeEEEEecCCCCcccHHHHHHHHHHHHHHcCCCccee---ecCCccchHHHHHHHHhcCCCCEEEEeC
Confidence 446777888899999999875 211 1112344677888888764432 2344556555555544445789999976
Q ss_pred CchhhhHHHHH
Q psy2427 116 GGSVIDTCKAA 126 (660)
Q Consensus 116 GGsviD~AK~~ 126 (660)
...++-+.+++
T Consensus 181 d~~A~g~~~al 191 (255)
T 1byk_A 181 DTLALGASKYL 191 (255)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 55554444433
No 163
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=49.71 E-value=99 Score=25.42 Aligned_cols=65 Identities=9% Similarity=0.073 Sum_probs=40.5
Q ss_pred CCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHH
Q psy2427 50 AQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAA 126 (660)
Q Consensus 50 ~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~ 126 (660)
..|++||.+.... .+.+...|++.|..+..+. +..++.+.+++..+|+||. +.+...+++.+.+
T Consensus 7 ~~~ilivdd~~~~----~~~l~~~L~~~g~~v~~~~---------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l 73 (130)
T 3eod_A 7 GKQILIVEDEQVF----RSLLDSWFSSLGATTVLAA---------DGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHI 73 (130)
T ss_dssp TCEEEEECSCHHH----HHHHHHHHHHTTCEEEEES---------CHHHHHHHHTTCCCSEEEECCC-----CHHHHHHH
T ss_pred CCeEEEEeCCHHH----HHHHHHHHHhCCceEEEeC---------CHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHH
Confidence 3688888776542 2567777888888766532 2345667778888998875 3566666766665
Q ss_pred H
Q psy2427 127 N 127 (660)
Q Consensus 127 a 127 (660)
.
T Consensus 74 ~ 74 (130)
T 3eod_A 74 R 74 (130)
T ss_dssp H
T ss_pred H
Confidence 4
No 164
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=49.03 E-value=74 Score=31.20 Aligned_cols=66 Identities=6% Similarity=-0.012 Sum_probs=43.8
Q ss_pred CEEEEEECccc--cccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchh
Q psy2427 51 QRVCVMTDPHL--SKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSV 119 (660)
Q Consensus 51 ~r~liVtd~~~--~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 119 (660)
+.+.+|..... .-....+-+.+.+++.|+.+.++.. +.+.+.-.+..+.+...++|.||-++....
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 83 (303)
T 3kke_A 16 GTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQI---DAPPRGTQQLSRLVSEGRVDGVLLQRREDF 83 (303)
T ss_dssp -CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEEC---CSTTHHHHHHHHHHHSCSSSEEEECCCTTC
T ss_pred CEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 45555554321 1122456778888889999887653 334555677888888999999999876543
No 165
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=49.01 E-value=25 Score=34.24 Aligned_cols=73 Identities=12% Similarity=0.075 Sum_probs=48.5
Q ss_pred cChHHHHHHHHHhcCCC-EEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE
Q psy2427 35 PGVTREVGMDMVNMKAQ-RVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA 113 (660)
Q Consensus 35 ~g~~~~l~~~l~~~g~~-r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa 113 (660)
.+..+.|.+.+.+ | + |++++.+.... +.+.+.|++.|+++..+.-++..|..+...++.+.+...++|.|+=
T Consensus 117 ~~~~e~L~~~l~~-g-~~~vL~~r~~~~~-----~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~f 189 (261)
T 1wcw_A 117 DGTSKSLLPLLPQ-G-RGVAALQLYGKPL-----PLLENALAERGYRVLPLMPYRHLPDPEGILRLEEALLRGEVDALAF 189 (261)
T ss_dssp SSSHHHHGGGSCC-C-CEEEEEECCSSCC-----HHHHHHHHHTTEEEEEECSEEEEECHHHHHHHHHHHHHTCCSEEEE
T ss_pred CccHHHHHHHHHc-C-CceEEEEccCccc-----HHHHHHHHHCCCEEEEEeeEEEecCCccHHHHHHHHHcCCCCEEEE
Confidence 3344555555554 4 6 88887765432 5688899999988876655554566666677777777778887664
Q ss_pred e
Q psy2427 114 V 114 (660)
Q Consensus 114 v 114 (660)
.
T Consensus 190 t 190 (261)
T 1wcw_A 190 V 190 (261)
T ss_dssp C
T ss_pred E
Confidence 4
No 166
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=49.00 E-value=74 Score=30.22 Aligned_cols=41 Identities=10% Similarity=0.202 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEE
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE 82 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~ 82 (660)
+...+.+...+.+|+.|++.+...+.+ ...+.|++.|+++.
T Consensus 104 ~a~~~~~~~~~~~rigvlaT~~T~~~~---~y~~~l~~~g~~v~ 144 (226)
T 2zsk_A 104 DAVAEEILKRGVRKVLLLGTKTTMTAD---FYIKTLEEKGLEVV 144 (226)
T ss_dssp HHHHHHHHHTTCCEEEEESSTTTTSCH---HHHHHHHTTTCEEE
T ss_pred HHHHHHHHHcCCCeEEEEeCHHHHhhh---HHHHHHHHCCCEEE
Confidence 334444454566899999777665553 45566677788764
No 167
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=48.99 E-value=80 Score=30.33 Aligned_cols=65 Identities=15% Similarity=0.060 Sum_probs=45.6
Q ss_pred CEEEEEECcc--ccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 51 QRVCVMTDPH--LSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 51 ~r~liVtd~~--~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
+++.+|.... .+-....+-+.+.+++.|+.+.++.. +.+.+.-.+..+.+...++|.||-.+...
T Consensus 8 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 74 (276)
T 3jy6_A 8 KLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDA---NADIEREKTLLRAIGSRGFDGLILQSFSN 74 (276)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEEC---TTCHHHHHHHHHHHHTTTCSEEEEESSCC
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEecCCc
Confidence 4566665432 11122456777888889999887653 44566677888888899999999998766
No 168
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=48.77 E-value=79 Score=26.56 Aligned_cols=63 Identities=17% Similarity=0.251 Sum_probs=39.5
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEe--cCchhhhHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAV--GGGSVIDTCKAA 126 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIav--GGGsviD~AK~~ 126 (660)
.|++||.|.... .+.+...|++.|+++..+. +..++.+.+++..+|+||-= .+...+++.+.+
T Consensus 5 ~~iLivdd~~~~----~~~l~~~L~~~g~~v~~~~---------~~~~a~~~l~~~~~dlvi~d~~~~~~g~~~~~~l 69 (142)
T 2qxy_A 5 PTVMVVDESRIT----FLAVKNALEKDGFNVIWAK---------NEQEAFTFLRREKIDLVFVDVFEGEESLNLIRRI 69 (142)
T ss_dssp CEEEEECSCHHH----HHHHHHHHGGGTCEEEEES---------SHHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHH
T ss_pred CeEEEEeCCHHH----HHHHHHHHHhCCCEEEEEC---------CHHHHHHHHhccCCCEEEEeCCCCCcHHHHHHHH
Confidence 578888776532 3567778888888766443 24556677777889977652 344444554444
No 169
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=48.72 E-value=28 Score=35.64 Aligned_cols=68 Identities=12% Similarity=0.165 Sum_probs=50.1
Q ss_pred CEEEEEECccccc---cchHHHHHHHHHhCCCeEEEEeCcc------cCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 51 QRVCVMTDPHLSK---LAPVKATLDSLTRHGVKFELFDKVR------VEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 51 ~r~liVtd~~~~~---~~~~~~i~~~L~~~gi~~~~~~~~~------~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
.++-||+-.+... ...+++.++.|++.|+++.+...+. ...+.+.++++.+.+.+-.+|+|+++-||-
T Consensus 13 D~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rGG~ 89 (331)
T 4e5s_A 13 DEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLGGY 89 (331)
T ss_dssp CEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCCCS
T ss_pred CEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccccc
Confidence 7888887654322 2345778889999999988654332 234577888888888888899999998884
No 170
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=48.51 E-value=28 Score=34.24 Aligned_cols=88 Identities=11% Similarity=0.001 Sum_probs=54.0
Q ss_pred HHHHHHHHhcCCCEEEEEECccccc--cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh--cCCCEEEEe
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS--VQCDAFIAV 114 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~IIav 114 (660)
..+.++|.+.|.+|+.+++++.-.. ....+-+.+.|++.|+.+....-...+.+.+...+.++.+.+ .++|+|++.
T Consensus 115 ~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 194 (294)
T 3qk7_A 115 SLAVKRLLELGHQRIAFVSTDARISYVDQRLQGYVQTMSEAGLMPLAGYLQKADPTRPGGYLAASRLLALEVPPTAIITD 194 (294)
T ss_dssp HHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHHHHHHHTTTCCCCTTCEEEECSSHHHHHHHHHHHHHSSSCCSEEEES
T ss_pred HHHHHHHHHCCCceEEEEeCCcccchHHHHHHHHHHHHHHCCCCCChhHeecCCCCHHHHHHHHHHHHcCCCCCcEEEEC
Confidence 4467788888999999998764221 112345677888888763210011234556655555555443 468999998
Q ss_pred cCchhhhHHHHH
Q psy2427 115 GGGSVIDTCKAA 126 (660)
Q Consensus 115 GGGsviD~AK~~ 126 (660)
....++-+.+++
T Consensus 195 nd~~A~g~~~al 206 (294)
T 3qk7_A 195 CNMLGDGVASAL 206 (294)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 776666555554
No 171
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=48.49 E-value=1.4e+02 Score=28.59 Aligned_cols=64 Identities=14% Similarity=0.113 Sum_probs=44.3
Q ss_pred CEEEEEECcc--ccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 51 QRVCVMTDPH--LSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 51 ~r~liVtd~~--~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
+++.+|.... .+-....+-+.+.+++.|+++.+++. +.+.+.-.+..+.+...++|.||-.+..
T Consensus 6 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 71 (291)
T 3l49_A 6 KTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDA---GRNDQTQVSQIQTLIAQKPDAIIEQLGN 71 (291)
T ss_dssp CEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHHCCSEEEEESSC
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcC---CCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4566655432 11123457788889999999887643 4556667778888888899999977665
No 172
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=48.42 E-value=24 Score=34.55 Aligned_cols=85 Identities=11% Similarity=0.024 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCCCEEEEEECccccc--cchHHHHHHHHHhCCCeEE---EEeCcccCCCHHHHHHHHHHhH-hcCCCEEE
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFE---LFDKVRVEPTGDSFLEATKFVR-SVQCDAFI 112 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~---~~~~~~~~p~~~~v~~~~~~~~-~~~~D~II 112 (660)
..+.++|.+.|.+|+.+|++..-.. ....+-+++.+++.|+++. ++ ..+.+.+...+.++.+. ..++|+|+
T Consensus 114 ~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~ai~ 190 (290)
T 3clk_A 114 YQATNLLINEGHRQIGIAGIDQYPYTGRKRLAGYKKALKEANIAINQEWIK---PGDYSYTSGEQAMKAFGKNTDLTGII 190 (290)
T ss_dssp HHHHHHHHTTTCCSEEEESCCCCTTTHHHHHHHHHHHHHHTTCCCCGGGEE---CCCSSHHHHHHHHHHHCTTCCCSEEE
T ss_pred HHHHHHHHHcCCCEEEEEeCCCCCcchHHHHHHHHHHHHHcCCCCCcceEE---cCCCChhhHHHHHHHHhccCCCcEEE
Confidence 4467788888999999998753211 1233556778888887642 22 12345555555555443 35689999
Q ss_pred EecCchhhhHHHHH
Q psy2427 113 AVGGGSVIDTCKAA 126 (660)
Q Consensus 113 avGGGsviD~AK~~ 126 (660)
+.....++-+.+++
T Consensus 191 ~~~d~~a~g~~~al 204 (290)
T 3clk_A 191 AASDMTAIGILNQA 204 (290)
T ss_dssp ESSHHHHHHHHHHH
T ss_pred ECCcHHHHHHHHHH
Confidence 98776666555544
No 173
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=48.30 E-value=97 Score=26.76 Aligned_cols=65 Identities=15% Similarity=0.025 Sum_probs=42.4
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEE-EEeCcccCCCHHHHHHHHHHhHhc--CCCEEEE---ecCchhhhHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE-LFDKVRVEPTGDSFLEATKFVRSV--QCDAFIA---VGGGSVIDTCK 124 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~-~~~~~~~~p~~~~v~~~~~~~~~~--~~D~IIa---vGGGsviD~AK 124 (660)
.|++||-|.... .+.+...|++.|+.+. .+. +..++.+.+++. .+|+||- +.+...+++.+
T Consensus 37 ~~Ilivdd~~~~----~~~l~~~L~~~g~~v~~~~~---------~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~ 103 (157)
T 3hzh_A 37 FNVLIVDDSVFT----VKQLTQIFTSEGFNIIDTAA---------DGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLS 103 (157)
T ss_dssp CEEEEECSCHHH----HHHHHHHHHHTTCEEEEEES---------SHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHH
T ss_pred eEEEEEeCCHHH----HHHHHHHHHhCCCeEEEEEC---------CHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHH
Confidence 378888775532 3567777888888765 443 234555666666 7898875 56777777777
Q ss_pred HHHh
Q psy2427 125 AANL 128 (660)
Q Consensus 125 ~~a~ 128 (660)
.+..
T Consensus 104 ~lr~ 107 (157)
T 3hzh_A 104 NIME 107 (157)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7643
No 174
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=48.30 E-value=48 Score=31.89 Aligned_cols=83 Identities=11% Similarity=0.042 Sum_probs=59.3
Q ss_pred ECcChHHHHHHHHHhcCCCEEEEEECcc--ccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCE
Q psy2427 33 IGPGVTREVGMDMVNMKAQRVCVMTDPH--LSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDA 110 (660)
Q Consensus 33 ~G~g~~~~l~~~l~~~g~~r~liVtd~~--~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~ 110 (660)
|..-.+.+.-+.+++.|++-+=+....- -......+++++.+++.|+.+..+.... ..+.+.+.+.++.+.+.+++.
T Consensus 27 ~~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~-~~~~~~~~~~i~~A~~lGa~~ 105 (257)
T 3lmz_A 27 FVNFDLDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIY-MKSEEEIDRAFDYAKRVGVKL 105 (257)
T ss_dssp GTTSCHHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEE-ECSHHHHHHHHHHHHHHTCSE
T ss_pred ecCCCHHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEeccc-cCCHHHHHHHHHHHHHhCCCE
Confidence 4444577778888999988776665421 1112245789999999999877543322 267899999999999999998
Q ss_pred EEEecC
Q psy2427 111 FIAVGG 116 (660)
Q Consensus 111 IIavGG 116 (660)
|+..-|
T Consensus 106 v~~~p~ 111 (257)
T 3lmz_A 106 IVGVPN 111 (257)
T ss_dssp EEEEEC
T ss_pred EEecCC
Confidence 886533
No 175
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=48.21 E-value=26 Score=35.46 Aligned_cols=88 Identities=13% Similarity=-0.007 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCCCEEEEEECcc--c-cccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhH-h-cCCCEEEE
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPH--L-SKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVR-S-VQCDAFIA 113 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~--~-~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~-~-~~~D~IIa 113 (660)
..+.++|.+.|.+|+.+|+++. . ......+-+.+.|++.|+.+....-...+.+.+...++.+.+. . .++|+|++
T Consensus 174 ~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~ 253 (344)
T 3kjx_A 174 REMAQAILKAGYRRIGFMGTKMPLDYRARKRFEGFTEVLGKNGVEIEDREFYSGGSALAKGREMTQAMLERSPDLDFLYY 253 (344)
T ss_dssp HHHHHHHHHHTCCSCCEEESSTTTCHHHHHHHHHHHHHHHHTTCCCSCEEECSSCCCHHHHHHHHHHHHHHSTTCCEEEE
T ss_pred HHHHHHHHHCCCCeEEEEecCcccCccHHHHHHHHHHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 4467778888999999998864 1 1111234567788888875432111223556665555555443 3 26899998
Q ss_pred ecCchhhhHHHHH
Q psy2427 114 VGGGSVIDTCKAA 126 (660)
Q Consensus 114 vGGGsviD~AK~~ 126 (660)
.....++-+.+++
T Consensus 254 ~nd~~A~g~~~al 266 (344)
T 3kjx_A 254 SNDMIAAGGLLYL 266 (344)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 8766665555544
No 176
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=48.01 E-value=1e+02 Score=26.57 Aligned_cols=64 Identities=16% Similarity=0.169 Sum_probs=43.8
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
.|++||-|.... .+.+.+.|++.|+.+..+. +..++.+.+++..+|+||- +.+..-+++.+.+.
T Consensus 8 ~~ILivdd~~~~----~~~l~~~L~~~g~~v~~~~---------~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr 74 (154)
T 3gt7_A 8 GEILIVEDSPTQ----AEHLKHILEETGYQTEHVR---------NGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLK 74 (154)
T ss_dssp CEEEEECSCHHH----HHHHHHHHHTTTCEEEEES---------SHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred CcEEEEeCCHHH----HHHHHHHHHHCCCEEEEeC---------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 578888776532 3567788888888776543 2456667777888997775 35666777777654
No 177
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=47.57 E-value=1.2e+02 Score=29.20 Aligned_cols=64 Identities=13% Similarity=0.139 Sum_probs=41.8
Q ss_pred CEEEEEECc--c--ccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 51 QRVCVMTDP--H--LSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 51 ~r~liVtd~--~--~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
+++.+|... . .+-....+-+.+.+++.|+++.+++. +.+.+.-.+..+.+...++|.||..+..
T Consensus 20 ~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgii~~~~~ 87 (296)
T 3brq_A 20 QTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADG---KHSAEEERQAIQYLLDLRCDAIMIYPRF 87 (296)
T ss_dssp CEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEECC---TTSHHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred ceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 466666543 1 11112446677788888998877643 3455555667777778899999988764
No 178
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=47.55 E-value=28 Score=34.36 Aligned_cols=88 Identities=11% Similarity=0.091 Sum_probs=54.4
Q ss_pred HHHHHHHHhcCCCEEEEEECccccc--cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHh-----Hh--cCCC
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFV-----RS--VQCD 109 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~-----~~--~~~D 109 (660)
..+.++|.+.|.+|+.+++++.-.. ....+-+++.|++.|+.+....-...+.+.+...+.++.+ .+ .++|
T Consensus 120 ~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ 199 (303)
T 3kke_A 120 GIATEHLITLGHSRIAFISGTAIHDTAQRRKEGYLETLASAGLRSEAAWVVDAGWEADAGSAALNTLYRGANLGKPDGPT 199 (303)
T ss_dssp HHHHHHHHHTTCCSEEEEESCSSCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHHHHCTTSTTSCS
T ss_pred HHHHHHHHHCCCCeEEEEeCCCcCccHHHHHHHHHHHHHHcCCCCCcceEEecCCChHHHHHHHHHhcchhhhcCCCCCc
Confidence 4466788888999999999864221 1123456778888887643100112345566655555555 33 4589
Q ss_pred EEEEecCchhhhHHHHH
Q psy2427 110 AFIAVGGGSVIDTCKAA 126 (660)
Q Consensus 110 ~IIavGGGsviD~AK~~ 126 (660)
+|++.....++-+.+++
T Consensus 200 ai~~~nd~~A~g~~~al 216 (303)
T 3kke_A 200 AVVVASVNAAVGALSTA 216 (303)
T ss_dssp EEEESSHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHH
Confidence 99998776666555544
No 179
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=47.37 E-value=1.2e+02 Score=30.02 Aligned_cols=49 Identities=14% Similarity=0.194 Sum_probs=37.6
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
..+-+.+.+++.|+.+.+++. +.+.+.-.+..+.+...++|.||-++..
T Consensus 81 ~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 129 (338)
T 3dbi_A 81 LLFHAARMAEEKGRQLLLADG---KHSAEEERQAIQYLLDLRCDAIMIYPRF 129 (338)
T ss_dssp HHHHHHHHHHHTTCEEEEEEC---TTSHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred HHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 446677888889999887753 4556666777888888999999988754
No 180
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=47.35 E-value=89 Score=30.41 Aligned_cols=86 Identities=13% Similarity=0.107 Sum_probs=55.4
Q ss_pred HHHHHHHHhcC--CCEEEEEECccccc--cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhH-h-cCCCEEE
Q psy2427 39 REVGMDMVNMK--AQRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVR-S-VQCDAFI 112 (660)
Q Consensus 39 ~~l~~~l~~~g--~~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~-~-~~~D~II 112 (660)
..+.++|.+.| .+|+.++++..-.. ....+-+++.|++.|+++.... ...+.+...+.++.+. . .++|+|+
T Consensus 117 ~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~ai~ 193 (297)
T 3rot_A 117 KKLGEKALELTPSAKRALVLNPQPGHIGLEKRAYGIKTILQDKGIFFEELD---VGTDPNQVQSRVKSYFKIHPETNIIF 193 (297)
T ss_dssp HHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEE---CCSCHHHHHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhcCCeEEEee---cCCChHHHHHHHHHHHHhCCCCCEEE
Confidence 44677787878 89999998764221 1233557788888898876433 2344555555555433 3 3579999
Q ss_pred EecCchhhhHHHHHH
Q psy2427 113 AVGGGSVIDTCKAAN 127 (660)
Q Consensus 113 avGGGsviD~AK~~a 127 (660)
+.....++-+.+++.
T Consensus 194 ~~~d~~A~g~~~al~ 208 (297)
T 3rot_A 194 CLTSQALDPLGQMLL 208 (297)
T ss_dssp ESSHHHHHHHHHHHH
T ss_pred EcCCcchHHHHHHHH
Confidence 988777666666553
No 181
>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*
Probab=47.28 E-value=98 Score=30.68 Aligned_cols=59 Identities=14% Similarity=0.130 Sum_probs=45.3
Q ss_pred HHHHhCCCeEEE-EeCcccCCCHHHHHHHHHHhHhcCCCEE-EEecCchhhhHHHHHHhHh
Q psy2427 72 DSLTRHGVKFEL-FDKVRVEPTGDSFLEATKFVRSVQCDAF-IAVGGGSVIDTCKAANLYY 130 (660)
Q Consensus 72 ~~L~~~gi~~~~-~~~~~~~p~~~~v~~~~~~~~~~~~D~I-IavGGGsviD~AK~~a~~~ 130 (660)
+...+.+..+.. |..++..|+.+++.+..+.+.+.++|.+ |++=--+.-|..++..+..
T Consensus 153 ~~a~~~~~kvI~S~Hdf~~tP~~~el~~~~~~~~~~GaDIvKia~~a~s~~Dvl~Ll~~~~ 213 (276)
T 3o1n_A 153 GYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATV 213 (276)
T ss_dssp HHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTTCSEEEEEECCSSHHHHHHHHHHHH
T ss_pred HHHHhCCCEEEEEeecCCCCcCHHHHHHHHHHHHHcCCCEEEEEecCCChHHHHHHHHHHH
Confidence 333455666553 5667778899999999999999999965 7888888889988887654
No 182
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=46.77 E-value=1.2e+02 Score=25.26 Aligned_cols=66 Identities=18% Similarity=0.149 Sum_probs=42.4
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEE-EEeCcccCCCHHHHHHHHHHhHhcCCCEEEEe----cCchhhhHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE-LFDKVRVEPTGDSFLEATKFVRSVQCDAFIAV----GGGSVIDTCKA 125 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~-~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIav----GGGsviD~AK~ 125 (660)
.|++||.+.... .+.+...|++.|+.+. ++.. ..++.+.+++..+|+||-= |+...+++.+.
T Consensus 10 ~~iLivdd~~~~----~~~l~~~L~~~g~~v~~~~~~---------~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~ 76 (140)
T 3cg0_A 10 PGVLIVEDGRLA----AATLRIQLESLGYDVLGVFDN---------GEEAVRCAPDLRPDIALVDIMLCGALDGVETAAR 76 (140)
T ss_dssp CEEEEECCBHHH----HHHHHHHHHHHTCEEEEEESS---------HHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHH
T ss_pred ceEEEEECCHHH----HHHHHHHHHHCCCeeEEEECC---------HHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHH
Confidence 578888776542 2556677777788765 3432 3455566666789987753 45677777776
Q ss_pred HHhH
Q psy2427 126 ANLY 129 (660)
Q Consensus 126 ~a~~ 129 (660)
+...
T Consensus 77 l~~~ 80 (140)
T 3cg0_A 77 LAAG 80 (140)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 6544
No 183
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=46.72 E-value=89 Score=26.39 Aligned_cols=64 Identities=14% Similarity=0.151 Sum_probs=39.6
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
.|++||.+..... +.+...|++.|+.+..+. +..++.+.+++..+|+||- +.+...+++.+.+.
T Consensus 9 ~~iLivd~~~~~~----~~l~~~L~~~g~~v~~~~---------~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~ 75 (147)
T 2zay_A 9 WRIMLVDTQLPAL----AASISALSQEGFDIIQCG---------NAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLK 75 (147)
T ss_dssp EEEEEECTTGGGG----HHHHHHHHHHTEEEEEES---------SHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred ceEEEEeCCHHHH----HHHHHHHHHcCCeEEEeC---------CHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 5788887665432 456667776677665442 2344556666678998775 35556666666554
No 184
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=46.29 E-value=1.1e+02 Score=29.82 Aligned_cols=66 Identities=8% Similarity=-0.124 Sum_probs=44.3
Q ss_pred CEEEEEECccc--cccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 51 QRVCVMTDPHL--SKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 51 ~r~liVtd~~~--~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
+++.+|..... .-....+-+.+.+++.|+.+.++.. .+.+.+.-.+.++.+...++|.||-.+...
T Consensus 5 ~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~--~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~ 72 (305)
T 3g1w_A 5 ETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGA--AQYDIQEQITVLEQAIAKNPAGIAISAIDP 72 (305)
T ss_dssp CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEEC--SSSCHHHHHHHHHHHHHHCCSEEEECCSST
T ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCC--CcCCHHHHHHHHHHHHHhCCCEEEEcCCCH
Confidence 56666664321 1122456677788888998876422 245667777888888888999999887543
No 185
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=46.29 E-value=1.2e+02 Score=24.84 Aligned_cols=64 Identities=14% Similarity=0.116 Sum_probs=42.5
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
.|++||.+.... .+.+...|++.|+.+..+. +..++.+.+++..+|+||. +.+...+++.+.+.
T Consensus 7 ~~ilivdd~~~~----~~~l~~~L~~~g~~v~~~~---------~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~ 73 (132)
T 3lte_A 7 KRILVVDDDQAM----AAAIERVLKRDHWQVEIAH---------NGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLR 73 (132)
T ss_dssp CEEEEECSCHHH----HHHHHHHHHHTTCEEEEES---------SHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHH
T ss_pred ccEEEEECCHHH----HHHHHHHHHHCCcEEEEeC---------CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence 588888776542 2557777888888776543 2355666777888998765 45666666666553
No 186
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=46.20 E-value=91 Score=27.94 Aligned_cols=65 Identities=15% Similarity=0.120 Sum_probs=45.6
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
.|++||-|.... ...+...|++.|+.+..+.. ..++.+.++...+|+||- +.|+.-+++.+.+.
T Consensus 8 ~~iLivdd~~~~----~~~l~~~L~~~g~~v~~~~~---------~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~ 74 (184)
T 3rqi_A 8 KNFLVIDDNEVF----AGTLARGLERRGYAVRQAHN---------KDEALKLAGAEKFEFITVXLHLGNDSGLSLIAPLC 74 (184)
T ss_dssp CEEEEECSCHHH----HHHHHHHHHHTTCEEEEECS---------HHHHHHHHTTSCCSEEEECSEETTEESHHHHHHHH
T ss_pred CeEEEEcCCHHH----HHHHHHHHHHCCCEEEEeCC---------HHHHHHHHhhCCCCEEEEeccCCCccHHHHHHHHH
Confidence 588888776542 25577778888887655432 345667777888998875 67888888888775
Q ss_pred h
Q psy2427 128 L 128 (660)
Q Consensus 128 ~ 128 (660)
.
T Consensus 75 ~ 75 (184)
T 3rqi_A 75 D 75 (184)
T ss_dssp H
T ss_pred h
Confidence 4
No 187
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=45.87 E-value=36 Score=32.82 Aligned_cols=85 Identities=11% Similarity=0.119 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCCCEEEEEECccccc--cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG 116 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG 116 (660)
..+.++|.+.|.+|+.++++..-.. ....+-+.+.+++.|+.+..+ ...+.+.+...+. ..+..++|+|++...
T Consensus 111 ~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~--~~~~~~~~~~~~~--l~~~~~~~ai~~~~d 186 (277)
T 3e61_A 111 QLQAEVVRKGKGKNVLIVHENLLIDAFHQRVQGIKYILDQQRIDYKML--EATLLDNDKKFID--LIKELSIDSIICSND 186 (277)
T ss_dssp HHHHHHHHHTTCCSEEEEESCTTSHHHHHHHHHHHHHHHC---CEEEE--EGGGGGSHHHHHH--HHHHHTCCEEEESSH
T ss_pred HHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHcCCCccce--ecCCCCHHHHHHH--hhcCCCCCEEEECCc
Confidence 4467788888999999998764221 122355677888888876531 1223333443343 334468999999987
Q ss_pred chhhhHHHHHH
Q psy2427 117 GSVIDTCKAAN 127 (660)
Q Consensus 117 GsviD~AK~~a 127 (660)
..++-+.+++.
T Consensus 187 ~~a~g~~~al~ 197 (277)
T 3e61_A 187 LLAINVLGIVQ 197 (277)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77666666553
No 188
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=45.86 E-value=25 Score=34.94 Aligned_cols=63 Identities=13% Similarity=0.038 Sum_probs=43.2
Q ss_pred C-EEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchh
Q psy2427 51 Q-RVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSV 119 (660)
Q Consensus 51 ~-r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 119 (660)
+ |++++.+.... +.+.+.|++.|+++..+.-++..|..+...++.+.+...++|.|+= =..+.
T Consensus 156 ~~~vLi~r~~~~~-----~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~F-tS~~~ 219 (286)
T 3d8t_A 156 RGVAALQLYGKPL-----PLLENALAERGYRVLPLMPYRHLPDPEGILRLEEAVLRGEVDALAF-VAAIQ 219 (286)
T ss_dssp CSEEEEECSSSCC-----HHHHHHHHHTTCEEEEECSEEEEECHHHHHHHHHHHHTTCCSEEEE-SSHHH
T ss_pred CceEEEEccCccc-----HHHHHHHHHCCCEEEEEEEEEEecCcccHHHHHHHHHcCCCCEEEE-ECHHH
Confidence 5 77777765422 5688899999998886665555566666677777777778886664 34443
No 189
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=45.82 E-value=32 Score=32.14 Aligned_cols=52 Identities=19% Similarity=0.141 Sum_probs=39.0
Q ss_pred HHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhh
Q psy2427 68 KATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVID 121 (660)
Q Consensus 68 ~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD 121 (660)
.-+.+.|++.|+++..+.-++. +.+.+.+.++.+.+.++|+||--||-|+.+
T Consensus 52 ~~L~~~L~~~G~~v~~~~iv~D--d~~~I~~al~~a~~~~~DlVIttGGts~g~ 103 (185)
T 3rfq_A 52 PLVTELLTEAGFVVDGVVAVEA--DEVDIRNALNTAVIGGVDLVVSVGGTGVTP 103 (185)
T ss_dssp HHHHHHHHHTTEEEEEEEEECS--CHHHHHHHHHHHHHTTCSEEEEESCCSSST
T ss_pred HHHHHHHHHCCCEEEEEEEeCC--CHHHHHHHHHHHHhCCCCEEEECCCCCCCC
Confidence 5688889999988775544432 367777777776556899999999988754
No 190
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=45.74 E-value=55 Score=31.85 Aligned_cols=100 Identities=6% Similarity=0.090 Sum_probs=58.5
Q ss_pred eEEECcChHHH-HHHHHHhcC---CCEEEEEECcccc--ccchHHHHHHHHHhCC-CeEEEEeCcccCCCHHHHHHHHHH
Q psy2427 30 TIRIGPGVTRE-VGMDMVNMK---AQRVCVMTDPHLS--KLAPVKATLDSLTRHG-VKFELFDKVRVEPTGDSFLEATKF 102 (660)
Q Consensus 30 ~i~~G~g~~~~-l~~~l~~~g---~~r~liVtd~~~~--~~~~~~~i~~~L~~~g-i~~~~~~~~~~~p~~~~v~~~~~~ 102 (660)
.+++--|.-.+ +-..+.+.| ..|+++|+..... .....+.+++.+...| +++.++ .+.+.--.+.+.++.+.
T Consensus 10 ~~~~tlGFd~~~~vral~~~g~~~~d~ViLv~~~~~~~~~~~A~~~i~~~l~~~~~i~~e~~-~vd~~df~~~v~~i~~~ 88 (244)
T 2wte_A 10 SYFVTMGFNETFLLRLLNETSAQKEDSLVIVVPSPIVSGTRAAIESLRAQISRLNYPPPRIY-EIEITDFNLALSKILDI 88 (244)
T ss_dssp EEEECCCSCCHHHHHHHHHTTCCTTSEEEEEEESSCCHHHHHHHHHHHHHHHHHTCCCEEEE-EECCCSHHHHHHHHHHH
T ss_pred hheeccCcChHHHHHHHHHhCCCCCCEEEEEeCCCcchhHHHHHHHHHHHHHHcCCCceEEE-EECCccHHHHHHHHHHH
Confidence 44444443322 444455664 4689988865321 1235578888887765 366543 23333335566777777
Q ss_pred hHhcCCCEEEEecCch-hhhHHHHHHhHh
Q psy2427 103 VRSVQCDAFIAVGGGS-VIDTCKAANLYY 130 (660)
Q Consensus 103 ~~~~~~D~IIavGGGs-viD~AK~~a~~~ 130 (660)
+++..-+.+|-+.||. ++.++=+.|+.+
T Consensus 89 i~~~~~~iivnlsGG~Ril~l~~l~A~~l 117 (244)
T 2wte_A 89 ILTLPEPIISDLTMGMRMINTLILLGIIV 117 (244)
T ss_dssp HTTSCSSEEEECSSSCHHHHHHHHHHHHH
T ss_pred HhhcCCcEEEEecCCchHHHHHHHHHHHh
Confidence 7765448888666665 566666666655
No 191
>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.00A {Salmonella typhimurium} SCOP: a.247.1.1 PDB: 2jn8_A
Probab=45.28 E-value=47 Score=27.02 Aligned_cols=59 Identities=19% Similarity=0.304 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHcCCCCccccc-------CCC---CCcHHHHHHhhccCCCCCCCCCccCC---HHHHHHHH
Q psy2427 595 LLADTVRGYMDQMKIENGLKVL-------GYT---SADIPALVTGTLPQHRITKLAPREQS---EEDLANLF 653 (660)
Q Consensus 595 ~~~~~l~~l~~~lglp~~L~el-------Gi~---~~~i~~ia~~a~~~~~~~~~~P~~~t---~e~i~~il 653 (660)
..++.+.+++++||+|.+-.|+ |-. .+.+...|++.-.-.+..-.||..+| .|++.++.
T Consensus 36 STAKGifKyL~elGvPas~~dv~aRg~qegWn~gFT~k~~gWAek~esGer~vIKnPEyFstYM~eeLkal~ 107 (115)
T 2es9_A 36 STAKGILKYLHDLGVPVSPEVVVARGEQEGWNPEFTKKVAGWAEKVASGNRILIKNPEYFSTYMQEQLKELV 107 (115)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCCSSGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHhcccccCChhHHHHHHHHHHHhccCCeeeecChHHHHHHHHHHHHHHH
Confidence 3468899999999999988876 322 23355556665445577778998887 45555543
No 192
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=45.21 E-value=1.2e+02 Score=29.23 Aligned_cols=65 Identities=6% Similarity=0.014 Sum_probs=42.3
Q ss_pred CEEEEEECcc--ccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 51 QRVCVMTDPH--LSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 51 ~r~liVtd~~--~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
+++.++.... .+-....+-+.+.+++.|+.+.+++. +.+.+...+..+.+...++|.||-.+...
T Consensus 8 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgii~~~~~~ 74 (289)
T 1dbq_A 8 KSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNA---WNNLEKQRAYLSMMAQKRVDGLLVMCSEY 74 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEEECSCC
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEcC---CCChHHHHHHHHHHHhCCCCEEEEEeccC
Confidence 4566665321 11112446677778888998876543 44566667777888888999999887543
No 193
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=45.10 E-value=26 Score=34.17 Aligned_cols=85 Identities=15% Similarity=0.143 Sum_probs=49.5
Q ss_pred HHHHHHHHhcCCCEEEEEECccccc--cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHH--hHh--cCCCEEE
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKF--VRS--VQCDAFI 112 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~--~~~--~~~D~II 112 (660)
..+.++|.+.|.+|+.+|+++.-.. ....+-+.+.|++.|+++.++. .+.+.+...+.++. +.+ .++|+|+
T Consensus 113 ~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~ai~ 189 (285)
T 3c3k_A 113 EYVVDQLVKSGKKRIALINHDLAYQYAQHRESGYLNRLKFHGLDYSRIS---YAENLDYMAGKLATFSLLKSAVKPDAIF 189 (285)
T ss_dssp HHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHHHHHHTCCCCEEE---ECSSSSHHHHHHHHHHHHSSSSCCSEEE
T ss_pred HHHHHHHHHcCCCeEEEEeCCCccccHHHHHHHHHHHHHHcCCCceEee---cCCChHHHHHHHHHHHHHcCCCCCeEEE
Confidence 3466778888999999998864211 1123446677777787643222 12233333344443 333 3689999
Q ss_pred EecCchhhhHHHHH
Q psy2427 113 AVGGGSVIDTCKAA 126 (660)
Q Consensus 113 avGGGsviD~AK~~ 126 (660)
+.....++-+.+++
T Consensus 190 ~~~d~~A~g~~~al 203 (285)
T 3c3k_A 190 AISDVLAAGAIQAL 203 (285)
T ss_dssp ESSHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHH
Confidence 98776665555544
No 194
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=45.00 E-value=1e+02 Score=29.53 Aligned_cols=62 Identities=10% Similarity=0.024 Sum_probs=42.7
Q ss_pred CEEEEEECcc--ccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEec
Q psy2427 51 QRVCVMTDPH--LSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVG 115 (660)
Q Consensus 51 ~r~liVtd~~--~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavG 115 (660)
+++.+|.... .+-....+-+.+.+++.|+.+.++.. +.+.+.-.+..+.+...++|.||-.+
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~~dgiIi~~ 72 (277)
T 3e61_A 9 KLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNS---DNDIKKAQGYLATFVSHNCTGMISTA 72 (277)
T ss_dssp -CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECG
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 4555555431 11122456777888889999887653 44667777888888889999999987
No 195
>1xmx_A Hypothetical protein VC1899; alpha-beta, MCSG, protein structure initiative, structural G PSI, midwest center for structural genomics; 2.10A {Vibrio cholerae} SCOP: c.52.1.26
Probab=44.94 E-value=1.9e+02 Score=30.00 Aligned_cols=89 Identities=10% Similarity=0.076 Sum_probs=60.2
Q ss_pred EECcChHHHHHHHH-HhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHH----HHHHHHhHhc
Q psy2427 32 RIGPGVTREVGMDM-VNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSF----LEATKFVRSV 106 (660)
Q Consensus 32 ~~G~g~~~~l~~~l-~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v----~~~~~~~~~~ 106 (660)
++|...+..+-..+ .+...+++++|+++...+ ..+++.+.|++.|+++..|.- ...-+.+.+ .++++.++..
T Consensus 9 lv~~~p~pnil~~l~~~~kp~~vv~I~s~~~~~--~~~~l~~~l~~~~i~~~~~~i-~~~~d~~~i~~~~~~l~~~~~~~ 85 (385)
T 1xmx_A 9 IIDQDPVRLVTPLLDHRTVSRHIIFIGDHTQTV--IYQRLSDVLNKRNISTDFFEI-PAGSNTSAIKSAIRELAETLKAR 85 (385)
T ss_dssp ECCSSCHHHHHHHHSTTCCCCEEEEEECGGGHH--HHHHHHHHHHHTTCEEEEEEC-CSSSCHHHHHHHHHHHHHHHHHH
T ss_pred EECCCchhHHHHHhcccCCCCEEEEEECCcHHH--HHHHHHHHHHHcCCCceEEec-CCccCHHHHHHHHHHHHHHhhcc
Confidence 45666666655555 346678999999877653 458899999999998886654 222344444 5555556556
Q ss_pred CCCEEEEecCchhhhHH
Q psy2427 107 QCDAFIAVGGGSVIDTC 123 (660)
Q Consensus 107 ~~D~IIavGGGsviD~A 123 (660)
+.++++=+=||+=+-..
T Consensus 86 ~~~v~~N~TGGTK~Msl 102 (385)
T 1xmx_A 86 GEEVKFNASCGLRHRLL 102 (385)
T ss_dssp TCEEEEECSSSCHHHHH
T ss_pred CCcEEEEeCCChHHHHH
Confidence 67899988888766653
No 196
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=44.72 E-value=36 Score=33.95 Aligned_cols=15 Identities=13% Similarity=0.231 Sum_probs=10.1
Q ss_pred CCCEEEEecCchhhh
Q psy2427 107 QCDAFIAVGGGSVID 121 (660)
Q Consensus 107 ~~D~IIavGGGsviD 121 (660)
.+|++|+=||+++..
T Consensus 225 ~aDlvI~~gG~T~~E 239 (282)
T 3hbm_A 225 ESNKLIISASSLVNE 239 (282)
T ss_dssp TEEEEEEESSHHHHH
T ss_pred HCCEEEECCcHHHHH
Confidence 568999977654433
No 197
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=44.64 E-value=1.7e+02 Score=29.08 Aligned_cols=64 Identities=6% Similarity=0.024 Sum_probs=42.1
Q ss_pred CEEEEEECcc--ccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 51 QRVCVMTDPH--LSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 51 ~r~liVtd~~--~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
+++.+|.... .+-....+-+.+.+++.|+.+.+++. +.+.+.-.+..+.+...++|.||-.+..
T Consensus 59 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 124 (340)
T 1qpz_A 59 KSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNA---WNNLEKQRAYLSMMAQKRVDGLLVMCSE 124 (340)
T ss_dssp SEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEeC---CCCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 4566665321 11112456677788888998876542 3455666677788888899999988754
No 198
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Probab=44.52 E-value=32 Score=31.16 Aligned_cols=61 Identities=15% Similarity=0.206 Sum_probs=36.5
Q ss_pred EEEEEECccccccchHHHHHHHHHhCCCeEE--EEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC
Q psy2427 52 RVCVMTDPHLSKLAPVKATLDSLTRHGVKFE--LFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG 116 (660)
Q Consensus 52 r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~--~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG 116 (660)
|+.||..+.-. ...++-.++.|++.|+... ++ .+++ .+|--..+.+.++..++|.||++|-
T Consensus 4 ri~IV~arfn~-~~Ll~gA~~~L~~~G~~~~i~~~-~VPG--afEiP~aak~la~~~~yDavIaLG~ 66 (156)
T 2b99_A 4 KVGIVDTTFAR-VDMASIAIKKLKELSPNIKIIRK-TVPG--IKDLPVACKKLLEEEGCDIVMALGM 66 (156)
T ss_dssp EEEEEEESSCS-SCCHHHHHHHHHHHCTTCEEEEE-EESS--GGGHHHHHHHHHHHSCCSEEEEEEC
T ss_pred EEEEEEEecch-HHHHHHHHHHHHHcCCCCeEEEE-ECCc--HHHHHHHHHHHHhcCCCCEEEEecc
Confidence 67777765433 3466888888988886433 22 2221 1232233344455678999999973
No 199
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=44.32 E-value=41 Score=30.78 Aligned_cols=61 Identities=15% Similarity=0.057 Sum_probs=43.4
Q ss_pred HHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc-CCCEEEEecCchhh--hHHHHHHhHh
Q psy2427 68 KATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV-QCDAFIAVGGGSVI--DTCKAANLYY 130 (660)
Q Consensus 68 ~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~-~~D~IIavGGGsvi--D~AK~~a~~~ 130 (660)
.-+.+.|++.|+++..+.-+.. +.+.+.+.++.+.+. ++|+||--||=++. |..+-+-..+
T Consensus 31 ~~l~~~L~~~G~~v~~~~iv~D--d~~~i~~~l~~a~~~~~~DlVittGG~g~~~~D~t~ea~~~~ 94 (172)
T 1mkz_A 31 HYLRDSAQEAGHHVVDKAIVKE--NRYAIRAQVSAWIASDDVQVVLITGGTGLTEGDQAPEALLPL 94 (172)
T ss_dssp HHHHHHHHHTTCEEEEEEEECS--CHHHHHHHHHHHHHSSSCCEEEEESCCSSSTTCCHHHHHGGG
T ss_pred HHHHHHHHHCCCeEeEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCCCHHHHHHHH
Confidence 4578888899998765543332 367777777777665 69999999998776 7776554333
No 200
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=44.32 E-value=89 Score=31.25 Aligned_cols=85 Identities=11% Similarity=0.022 Sum_probs=54.1
Q ss_pred HHHHHHHHhcCCCEEEEEECccccc--cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh-cCCCEEEEec
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS-VQCDAFIAVG 115 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~D~IIavG 115 (660)
..+.++|.+.|.+|+.+++++.-.. ....+-+.+.|++.|+. .++. ..+.+.+...++.+.+.+ ..+|+|++..
T Consensus 163 ~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~-~~~~--~~~~~~~~~~~~~~~ll~~~~~~ai~~~n 239 (333)
T 3jvd_A 163 FQLTESVLGGSGMNIAALVGEESLSTTQERMRGISHAASIYGAE-VTFH--FGHYSVESGEEMAQVVFNNGLPDALIVAS 239 (333)
T ss_dssp HHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE-EEEE--ECCSSHHHHHHHHHHHHHTCCCSEEEECC
T ss_pred HHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHCCCC-EEEe--cCCCCHHHHHHHHHHHhcCCCCcEEEECC
Confidence 4467788888999999999874221 12335577888889988 3322 024556666555555444 3389999987
Q ss_pred CchhhhHHHHH
Q psy2427 116 GGSVIDTCKAA 126 (660)
Q Consensus 116 GGsviD~AK~~ 126 (660)
...++-+.+++
T Consensus 240 d~~A~g~~~al 250 (333)
T 3jvd_A 240 PRLMAGVMRAF 250 (333)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66555554444
No 201
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=43.95 E-value=16 Score=36.96 Aligned_cols=84 Identities=10% Similarity=-0.080 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 38 TREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 38 ~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
...+.+++.+.|.+|+.|+.+...+.....+.+.+.+++.|.++........ .+.. ......+..++|.|+-.|.+
T Consensus 112 ~~~~a~~~~~~g~k~~~ii~~~~~yg~~~~~~f~~~~~~~Gg~vv~~~~~~~-~~~~---~~~~~~~~~~~dai~~~~~~ 187 (327)
T 3ckm_A 112 AESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVRWQQLAGTDANIRYYNL-PADV---TYFVQENNSNTTALYAVASP 187 (327)
T ss_dssp HHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHHHHHHHSSCCEEEEESS-TTHH---HHHHHHSCTTCCEEEECCCH
T ss_pred HHHHHHHHHhcCCeeEEEEecCChHHHHHHHHHHHHHHHCCCeEEEEEECCC-Cchh---hHHHHHhccCCcEEEEEcCH
Confidence 3457778888899999999988877666778888889888876543222221 2221 22345566789999988765
Q ss_pred hhhhHHHHHH
Q psy2427 118 SVIDTCKAAN 127 (660)
Q Consensus 118 sviD~AK~~a 127 (660)
. |++.++-
T Consensus 188 ~--~~~~i~~ 195 (327)
T 3ckm_A 188 T--ELAEMKG 195 (327)
T ss_dssp H--HHHHHHH
T ss_pred H--HHHHHHH
Confidence 4 4444443
No 202
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=43.36 E-value=1.4e+02 Score=30.51 Aligned_cols=78 Identities=9% Similarity=0.079 Sum_probs=45.1
Q ss_pred HHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCC----------------------HHHHHH
Q psy2427 41 VGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPT----------------------GDSFLE 98 (660)
Q Consensus 41 l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~----------------------~~~v~~ 98 (660)
|.+.|.+.| .++.+++.+... +.+++.|+.+..+....+... ...+.+
T Consensus 40 La~~L~~~G-h~V~v~~~~~~~---------~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (415)
T 3rsc_A 40 VVTELVRRG-HRVSYVTAGGFA---------EPVRAAGATVVPYQSEIIDADAAEVFGSDDLGVRPHLMYLRENVSVLRA 109 (415)
T ss_dssp HHHHHHHTT-CEEEEEECGGGH---------HHHHHTTCEEEECCCSTTTCCHHHHHHSSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCC-CEEEEEeCHHHH---------HHHHhcCCEEEeccccccccccchhhccccHHHHHHHHHHHHHHHHHHH
Confidence 667778888 689999865421 234566888776543111111 122455
Q ss_pred HHHHhHhcCCCEEEEecCchhhhHHHHHHhHh
Q psy2427 99 ATKFVRSVQCDAFIAVGGGSVIDTCKAANLYY 130 (660)
Q Consensus 99 ~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~ 130 (660)
+.+.+++.++|+||. .+ ...-.+..+|...
T Consensus 110 l~~~l~~~~PDlVi~-d~-~~~~~~~~aA~~~ 139 (415)
T 3rsc_A 110 TAEALDGDVPDLVLY-DD-FPFIAGQLLAARW 139 (415)
T ss_dssp HHHHHSSSCCSEEEE-ES-TTHHHHHHHHHHT
T ss_pred HHHHHhccCCCEEEE-Cc-hhhhHHHHHHHHh
Confidence 667778889999994 32 2223345555443
No 203
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=43.18 E-value=95 Score=25.95 Aligned_cols=65 Identities=17% Similarity=0.051 Sum_probs=42.6
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
.+++||.+... ..+.+...|++.|+.+..+. +..++.+.+++..+|+||- +.+...+++.+.+.
T Consensus 8 ~~iLivdd~~~----~~~~l~~~L~~~g~~v~~~~---------~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~ 74 (142)
T 3cg4_A 8 GDVMIVDDDAH----VRIAVKTILSDAGFHIISAD---------SGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAIL 74 (142)
T ss_dssp CEEEEECSCHH----HHHHHHHHHHHTTCEEEEES---------SHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHH
T ss_pred CeEEEEcCCHH----HHHHHHHHHHHCCeEEEEeC---------CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 57888876653 23567778888888765443 2356666777778998774 35666667766664
Q ss_pred h
Q psy2427 128 L 128 (660)
Q Consensus 128 ~ 128 (660)
.
T Consensus 75 ~ 75 (142)
T 3cg4_A 75 D 75 (142)
T ss_dssp H
T ss_pred h
Confidence 3
No 204
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=43.15 E-value=1.3e+02 Score=26.56 Aligned_cols=71 Identities=8% Similarity=-0.006 Sum_probs=53.2
Q ss_pred hHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEe
Q psy2427 37 VTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAV 114 (660)
Q Consensus 37 ~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIav 114 (660)
-+..|.+.+.....++++|.+...- ..+.+.+.|.+.|+.+..+.+ .-+.+.-.++.+.+++...+++|+-
T Consensus 17 K~~~l~~ll~~~~~~~~lVF~~~~~----~~~~l~~~L~~~~~~~~~~~~---~~~~~~r~~~~~~f~~g~~~vlv~T 87 (165)
T 1fuk_A 17 KYECLTDLYDSISVTQAVIFCNTRR----KVEELTTKLRNDKFTVSAIYS---DLPQQERDTIMKEFRSGSSRILIST 87 (165)
T ss_dssp HHHHHHHHHHHTTCSCEEEEESSHH----HHHHHHHHHHHTTCCEEEECT---TSCHHHHHHHHHHHHTTSCSEEEEE
T ss_pred HHHHHHHHHHhCCCCCEEEEECCHH----HHHHHHHHHHHcCCCEEEEEC---CCCHHHHHHHHHHHHcCCCEEEEEc
Confidence 5667777787776678888876542 237788889888988876654 5566777788888888888888876
No 205
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=43.13 E-value=81 Score=28.05 Aligned_cols=66 Identities=12% Similarity=0.147 Sum_probs=45.2
Q ss_pred CEEEEEECccccc------cchHHHHHHHHHhCCCeEEEEe-CcccCCCHHHHHHHHHHhHhcCCCEEEEecC
Q psy2427 51 QRVCVMTDPHLSK------LAPVKATLDSLTRHGVKFELFD-KVRVEPTGDSFLEATKFVRSVQCDAFIAVGG 116 (660)
Q Consensus 51 ~r~liVtd~~~~~------~~~~~~i~~~L~~~gi~~~~~~-~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG 116 (660)
+|++++.|+-... .++...+.+.|.+.+..+.+.+ ++.+..+.+.+.++.+.+...++|.||=..|
T Consensus 3 ~~i~~~GDSit~G~g~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~G~~~~~~~~~~~~~~~~~~pd~vvi~~G 75 (185)
T 3hp4_A 3 NTILILGDXLSAAYGLQQEEGWVKLLQDKYDAEQSDIVLINASISGETSGGALRRLDALLEQYEPTHVLIELG 75 (185)
T ss_dssp EEEEEEECTTTTTTTSCGGGSHHHHHHHHHHHTTCCEEEEECCCTTCCHHHHHHHHHHHHHHHCCSEEEEECC
T ss_pred CeEEEECCcccccCCCCCcccHHHHHHHHHHhcCCcEEEEECCcCCccHHHHHHHHHHHHhhcCCCEEEEEee
Confidence 6788888876542 3466788888888777766654 4555556666666666666678997666555
No 206
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=43.07 E-value=63 Score=31.23 Aligned_cols=62 Identities=8% Similarity=0.116 Sum_probs=43.2
Q ss_pred CEEEEEECcc--ccccchHHHHHHHHHhCCCe-EEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEec
Q psy2427 51 QRVCVMTDPH--LSKLAPVKATLDSLTRHGVK-FELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVG 115 (660)
Q Consensus 51 ~r~liVtd~~--~~~~~~~~~i~~~L~~~gi~-~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavG 115 (660)
+++.+|.... ..-....+-+.+.+++.|+. +.++.. +.+.+.-.+..+.+...++|.||-++
T Consensus 11 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 11 KMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFST---NSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECS---SCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeC---CCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 5666665432 11122456778888889999 766543 45666777788888899999999887
No 207
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=43.04 E-value=38 Score=34.39 Aligned_cols=68 Identities=21% Similarity=0.242 Sum_probs=50.6
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCc------ccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKV------RVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~------~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
.++-||+-.+......+++.++.|++.|+++.+...+ -...+.+.++++.+.+.+-.+|+|+++-||-
T Consensus 18 d~I~ivaPSs~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGGy 91 (311)
T 1zl0_A 18 GRVALIAPASAIATDVLEATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDITAVWCLRGGY 91 (311)
T ss_dssp SEEEEECCSBCCCHHHHHHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTEEEEEESCCSS
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEECccccccccccCCCHHHHHHHHHHHHhCCCCCEEEEccCCc
Confidence 6788887655332334588889999999998854322 2346678888888899988999999999984
No 208
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=42.98 E-value=35 Score=34.24 Aligned_cols=88 Identities=18% Similarity=0.154 Sum_probs=54.1
Q ss_pred HHHHHHHHhcCCCEEEEEECcccccc--chHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh--cCCCEEEEe
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKL--APVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS--VQCDAFIAV 114 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~--~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~IIav 114 (660)
..+.++|.+.|.+|+.+++++.-... ...+-+.+.|++.|+.+....-...+.+.+...+.++.+.+ .++|+|++.
T Consensus 170 ~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~ 249 (338)
T 3dbi_A 170 FNAVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALVAS 249 (338)
T ss_dssp HHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCSEEEES
T ss_pred HHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHHHHHHHHCCCCCCcceEEeCCCCHHHHHHHHHHHHcCCCCCeEEEEC
Confidence 34667788889999999987632211 12344777888888764311111234566666666655543 468999997
Q ss_pred cCchhhhHHHHH
Q psy2427 115 GGGSVIDTCKAA 126 (660)
Q Consensus 115 GGGsviD~AK~~ 126 (660)
....++-+.+++
T Consensus 250 nd~~A~g~~~al 261 (338)
T 3dbi_A 250 NDDMAIGAMKAL 261 (338)
T ss_dssp SHHHHHHHHHHH
T ss_pred ChHHHHHHHHHH
Confidence 766655555544
No 209
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=42.84 E-value=79 Score=31.35 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=35.2
Q ss_pred HHHHHHHHhCCCe----EEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 68 KATLDSLTRHGVK----FELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 68 ~~i~~~L~~~gi~----~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
+-+++.|++.|.. +. |.-...+-+.+....+++.+...++|+||++|.-
T Consensus 27 ~G~~~~L~~~G~~~g~nv~-~~~~~a~gd~~~~~~~~~~l~~~~~DlIiai~t~ 79 (302)
T 3lkv_A 27 QGLLDGLKAKGYEEGKNLE-FDYKTAQGNPAIAVQIARQFVGENPDVLVGIATP 79 (302)
T ss_dssp HHHHHHHHHTTCCBTTTEE-EEEEECTTCHHHHHHHHHHHHTTCCSEEEEESHH
T ss_pred HHHHHHHHhhCcccCCcEE-EEEEeCCCCHHHHHHHHHHHHhcCCcEEEEcCCH
Confidence 4467788887742 32 2222346678889999999999999999999743
No 210
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=42.71 E-value=1.2e+02 Score=23.93 Aligned_cols=64 Identities=11% Similarity=0.018 Sum_probs=38.5
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
+|++||.+.... .+.+...|+..|+.+..+. + ..++.+.+++..+|+||- ..+....++.+.+.
T Consensus 2 ~~iliv~~~~~~----~~~l~~~l~~~g~~v~~~~------~---~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~ 68 (119)
T 2j48_A 2 GHILLLEEEDEA----ATVVCEMLTAAGFKVIWLV------D---GSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLR 68 (119)
T ss_dssp CEEEEECCCHHH----HHHHHHHHHHTTCEEEEES------C---HHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHH
T ss_pred CEEEEEeCCHHH----HHHHHHHHHhCCcEEEEec------C---HHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence 577887765532 2567777888888766443 2 344555566678897764 23444555555443
No 211
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=42.67 E-value=37 Score=34.14 Aligned_cols=88 Identities=14% Similarity=0.044 Sum_probs=52.5
Q ss_pred HHHHHHHHhcCCCEEEEEECcccc--ccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh--cCCCEEEEe
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLS--KLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS--VQCDAFIAV 114 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~--~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~IIav 114 (660)
..+.++|.+.|.+|+.+|+++.-. .....+-+.+.|++.|+.+........+-+.+...+..+.+.+ .++|.|++.
T Consensus 166 ~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~ 245 (340)
T 1qpz_A 166 YMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCG 245 (340)
T ss_dssp HHHHHHHHHHTCCCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEES
T ss_pred HHHHHHHHHCCCCEEEEEeCCCccccHHHHHHHHHHHHHHCCCCCChhheEeCCCCHHHHHHHHHHHHcCCCCCcEEEEC
Confidence 446677888899999999876321 1112345677888888764311011223455555555555544 468999997
Q ss_pred cCchhhhHHHHH
Q psy2427 115 GGGSVIDTCKAA 126 (660)
Q Consensus 115 GGGsviD~AK~~ 126 (660)
....++-+.+++
T Consensus 246 nd~~A~g~~~al 257 (340)
T 1qpz_A 246 GDIMAMGALCAA 257 (340)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 666555444443
No 212
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=42.64 E-value=1.2e+02 Score=24.46 Aligned_cols=64 Identities=9% Similarity=0.119 Sum_probs=38.8
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ec-CchhhhHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VG-GGSVIDTCKAA 126 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vG-GGsviD~AK~~ 126 (660)
.|++||.+.... .+.+...|++.|+.+..+.. ..++.+.+++..+|+||- +. +....++.+.+
T Consensus 6 ~~ilivdd~~~~----~~~l~~~L~~~g~~v~~~~~---------~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l 72 (127)
T 2gkg_A 6 KKILIVESDTAL----SATLRSALEGRGFTVDETTD---------GKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKL 72 (127)
T ss_dssp CEEEEECSCHHH----HHHHHHHHHHHTCEEEEECC---------HHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHH
T ss_pred CeEEEEeCCHHH----HHHHHHHHHhcCceEEEecC---------HHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHH
Confidence 478888766532 25567777777887664432 344555666678997764 23 44556665555
Q ss_pred H
Q psy2427 127 N 127 (660)
Q Consensus 127 a 127 (660)
.
T Consensus 73 ~ 73 (127)
T 2gkg_A 73 K 73 (127)
T ss_dssp H
T ss_pred h
Confidence 3
No 213
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Probab=42.61 E-value=29 Score=37.94 Aligned_cols=78 Identities=14% Similarity=0.181 Sum_probs=49.8
Q ss_pred hHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHh-CCCeEEEEeCcccCCCHHHHHHHHHHhHhc---CCCEEE
Q psy2427 37 VTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTR-HGVKFELFDKVRVEPTGDSFLEATKFVRSV---QCDAFI 112 (660)
Q Consensus 37 ~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~-~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~---~~D~II 112 (660)
++.+..+.++.++.+++.+|+...+++..-.+.+.+..++ .|+++.+.++-+ |.-.......... +.-.||
T Consensus 68 ~L~~f~~~~~~~~v~~v~~vATsA~R~A~N~~~fl~~i~~~tG~~i~vIsG~e-----EA~l~~~gv~~~~~~~~~~lvi 142 (513)
T 1u6z_A 68 CLSLFAERLQGFSPASVCIVGTHTLRQALNATDFLKRAEKVIPYPIEIISGNE-----EARLIFMGVEHTQPEKGRKLVI 142 (513)
T ss_dssp HHHHHHHHTTTCCGGGEEEEECHHHHHCTTHHHHHHHHTTTCSSCEEECCHHH-----HHHHHHHHHHHHSCCCSCEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEEecHHHHcCcCHHHHHHHHHHHHCCCEEEeCHHH-----HHHHHHHHHHhhccCCCCEEEE
Confidence 4455556666778889999999888776555777777765 499999876522 1111111112221 223999
Q ss_pred EecCchh
Q psy2427 113 AVGGGSV 119 (660)
Q Consensus 113 avGGGsv 119 (660)
=|||||+
T Consensus 143 DIGGGSt 149 (513)
T 1u6z_A 143 DIGGGST 149 (513)
T ss_dssp EECSSCE
T ss_pred EECCCcE
Confidence 9999996
No 214
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=42.33 E-value=31 Score=40.36 Aligned_cols=56 Identities=16% Similarity=0.297 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCC
Q psy2427 93 GDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSG 166 (660)
Q Consensus 93 ~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~g 166 (660)
.+...++++.++++++|.+|.|||--.++.|+.++....+ | +.-.+|+|.||-|.-
T Consensus 674 ~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~-------y-----------~~~~I~vVGIPkTID 729 (989)
T 3opy_A 674 SDDMGTVAYYFQQYKFDGLIIIGGFEAFTALYELDAARAQ-------Y-----------PIFNIPMCCLPATVS 729 (989)
T ss_dssp GGGHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHTTT-------C-----------GGGCSCEEEEEBCSS
T ss_pred hhhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhh-------C-----------CCcCCcEEecccccc
Confidence 3578889999999999999999998778888776543211 0 000189999999973
No 215
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=42.19 E-value=1.2e+02 Score=27.18 Aligned_cols=72 Identities=10% Similarity=0.038 Sum_probs=52.2
Q ss_pred hHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEec
Q psy2427 37 VTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVG 115 (660)
Q Consensus 37 ~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavG 115 (660)
-+..|.+.+.....++++|.+...- ..+.+.+.|.+.|+.+..+.+ .-+...-.++.+.+++...+++|+-.
T Consensus 21 K~~~L~~ll~~~~~~~~lVF~~~~~----~~~~l~~~L~~~~~~~~~~~g---~~~~~~R~~~~~~f~~g~~~vLvaT~ 92 (175)
T 2rb4_A 21 KYQALCNIYGSITIGQAIIFCQTRR----NAKWLTVEMIQDGHQVSLLSG---ELTVEQRASIIQRFRDGKEKVLITTN 92 (175)
T ss_dssp HHHHHHHHHTTSCCSEEEEECSCHH----HHHHHHHHHHTTTCCEEEECS---SCCHHHHHHHHHHHHTTSCSEEEECC
T ss_pred HHHHHHHHHHhCCCCCEEEEECCHH----HHHHHHHHHHHcCCcEEEEeC---CCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 4555667777766578887776432 237788889888988877654 56677777888888888888888763
No 216
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=42.05 E-value=1.6e+02 Score=28.66 Aligned_cols=50 Identities=6% Similarity=0.033 Sum_probs=39.0
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
..+-+.+.+++.|+.+.++.. +.+.+.-.+.++.+...++|.||-.+...
T Consensus 20 ~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~ 69 (313)
T 3m9w_A 20 DRDIFVKKAESLGAKVFVQSA---NGNEETQMSQIENMINRGVDVLVIIPYNG 69 (313)
T ss_dssp HHHHHHHHHHHTSCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEEECSST
T ss_pred HHHHHHHHHHHcCCEEEEECC---CCCHHHHHHHHHHHHHcCCCEEEEeCCCh
Confidence 557788889999999887653 45666677788888888999999887543
No 217
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=41.95 E-value=1e+02 Score=26.39 Aligned_cols=65 Identities=18% Similarity=0.101 Sum_probs=42.6
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
.+++||.+.... .+.+...|++.|+.+..+. +..++.+.++...+|+||- +++...+++.+.+.
T Consensus 4 ~~ILivdd~~~~----~~~l~~~L~~~g~~v~~~~---------~~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~ 70 (155)
T 1qkk_A 4 PSVFLIDDDRDL----RKAMQQTLELAGFTVSSFA---------SATEALAGLSADFAGIVISDIRMPGMDGLALFRKIL 70 (155)
T ss_dssp CEEEEECSCHHH----HHHHHHHHHHTTCEEEEES---------CHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred CEEEEEeCCHHH----HHHHHHHHHHcCcEEEEEC---------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 578888766532 2567777888888766543 2355666677778998774 45666677777664
Q ss_pred h
Q psy2427 128 L 128 (660)
Q Consensus 128 ~ 128 (660)
.
T Consensus 71 ~ 71 (155)
T 1qkk_A 71 A 71 (155)
T ss_dssp H
T ss_pred h
Confidence 3
No 218
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=41.51 E-value=82 Score=29.88 Aligned_cols=66 Identities=11% Similarity=0.096 Sum_probs=42.5
Q ss_pred CCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHH-HHHHHHhHhcCCCEEEEecCchhhh
Q psy2427 49 KAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSF-LEATKFVRSVQCDAFIAVGGGSVID 121 (660)
Q Consensus 49 g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v-~~~~~~~~~~~~D~IIavGGGsviD 121 (660)
+.+-++|||++.-. ..++..++.|+.+..++... -.+.+.. .++.+.+++.++|+||.+|=|..+-
T Consensus 27 ~~~i~~Vis~~~~~------~~~~~A~~~gIp~~~~~~~~-~~~r~~~~~~~~~~l~~~~~Dliv~agy~~il~ 93 (212)
T 1jkx_A 27 KGTVRAVFSNKADA------FGLERARQAGIATHTLIASA-FDSREAYDRELIHEIDMYAPDVVVLAGFMRILS 93 (212)
T ss_dssp SSEEEEEEESCTTC------HHHHHHHHTTCEEEECCGGG-CSSHHHHHHHHHHHHGGGCCSEEEESSCCSCCC
T ss_pred CceEEEEEeCCCch------HHHHHHHHcCCcEEEeCccc-ccchhhccHHHHHHHHhcCCCEEEEeChhhhCC
Confidence 33456788875321 13455667899987654221 2233332 4567888999999999999887764
No 219
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=41.29 E-value=86 Score=30.66 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=36.9
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
..+-+.+.+++.|+.+.++.. +.+.+.-.+..+.+...++|.||-++...
T Consensus 45 ~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 94 (305)
T 3huu_A 45 VLNGINQACNVRGYSTRMTVS---ENSGDLYHEVKTMIQSKSVDGFILLYSLK 94 (305)
T ss_dssp HHHHHHHHHHHHTCEEEECCC---SSHHHHHHHHHHHHHTTCCSEEEESSCBT
T ss_pred HHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHhCCCCEEEEeCCcC
Confidence 446677788888998887542 33455567788888889999999887654
No 220
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=41.24 E-value=2e+02 Score=27.53 Aligned_cols=65 Identities=15% Similarity=0.077 Sum_probs=45.6
Q ss_pred CEEEEEECccc--cccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 51 QRVCVMTDPHL--SKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 51 ~r~liVtd~~~--~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
+++.+|..... +-....+-+.+.+++.|+.+.++.. +.+.+.-.+..+.+...++|.||-.+..+
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 82 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTST---NNNPDNERRGLENLLSQHIDGLIVEPTKS 82 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTCCSEEEECCSST
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHHCCCCEEEEecccc
Confidence 56666654321 1122457788888899999887653 45666777888888889999999887654
No 221
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=41.22 E-value=1.4e+02 Score=24.13 Aligned_cols=65 Identities=14% Similarity=0.118 Sum_probs=40.2
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
.|++||-|.... .+.+...|+..|+.+..+. + ..++.+.++...+|+||- +.|..-+++.+.+.
T Consensus 4 ~~ilivdd~~~~----~~~l~~~l~~~~~~v~~~~------~---~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~ 70 (124)
T 1srr_A 4 EKILIVDDQSGI----RILLNEVFNKEGYQTFQAA------N---GLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMK 70 (124)
T ss_dssp CEEEEECSCHHH----HHHHHHHHHTTTCEEEEES------S---HHHHHHHHHHHCCSEEEEESCCTTCCHHHHHHHHH
T ss_pred ceEEEEeCCHHH----HHHHHHHHHHCCcEEEEeC------C---HHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHH
Confidence 477887765532 2556777777787655432 2 234555556678898774 45666677777664
Q ss_pred h
Q psy2427 128 L 128 (660)
Q Consensus 128 ~ 128 (660)
.
T Consensus 71 ~ 71 (124)
T 1srr_A 71 V 71 (124)
T ss_dssp H
T ss_pred H
Confidence 3
No 222
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=41.16 E-value=77 Score=31.96 Aligned_cols=88 Identities=6% Similarity=0.014 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCCCEEEEEECccccc---cchHHHHHHHHHhCCCeEE-EEeCcccCCCHHHHHHHHHHhHh--cCCCEEE
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSK---LAPVKATLDSLTRHGVKFE-LFDKVRVEPTGDSFLEATKFVRS--VQCDAFI 112 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~---~~~~~~i~~~L~~~gi~~~-~~~~~~~~p~~~~v~~~~~~~~~--~~~D~II 112 (660)
..+.++|.+.|.+|+.+|+++.... ....+-+.+.|++.|+... .+.-....-+.+...++.+.+.+ .++|+|+
T Consensus 176 ~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~ 255 (355)
T 3e3m_A 176 YDMTNALLARGFRKIVFLGEKDDDWTRGAARRAGFKRAMREAGLNPDQEIRLGAPPLSIEDGVAAAELILQEYPDTDCIF 255 (355)
T ss_dssp HHHHHHHHHTTCCSEEEEEESSCTTSHHHHHHHHHHHHHHHTTSCSCCEEEESCSSCCHHHHHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHCCCCeEEEEccCcccChhHHHHHHHHHHHHHHCCcCCCccEEEecCCCCHHHHHHHHHHHHcCCCCCcEEE
Confidence 4467788888999999998754211 1233557778888887532 11111223445555555544433 4689999
Q ss_pred EecCchhhhHHHHH
Q psy2427 113 AVGGGSVIDTCKAA 126 (660)
Q Consensus 113 avGGGsviD~AK~~ 126 (660)
+.....++-+.+++
T Consensus 256 ~~nD~~A~g~~~al 269 (355)
T 3e3m_A 256 CVSDMPAFGLLSRL 269 (355)
T ss_dssp ESSHHHHHHHHHHH
T ss_pred ECChHHHHHHHHHH
Confidence 98766665555544
No 223
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=41.10 E-value=53 Score=31.89 Aligned_cols=87 Identities=11% Similarity=0.079 Sum_probs=49.6
Q ss_pred HHHHHHHHhcCCCEEEEEECccccc--cchHHHHHHHHHhCCCeEE----EEeCcccCCCHHHHHHHHHHhHhcCCCEEE
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFE----LFDKVRVEPTGDSFLEATKFVRSVQCDAFI 112 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~----~~~~~~~~p~~~~v~~~~~~~~~~~~D~II 112 (660)
..+.++|.+.|.+|+.++++..-.. ....+-+.+.+++.|+.+. .......+...+.+.++++ +..++|+|+
T Consensus 114 ~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~ai~ 191 (291)
T 3egc_A 114 RTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLT--GADRPTALL 191 (291)
T ss_dssp HHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC------CCHHHHHHHHT--C-CCCSEEE
T ss_pred HHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHHh--CCCCCcEEE
Confidence 4467788888999999998764211 1233556778888887542 1222222333333333332 235689999
Q ss_pred EecCchhhhHHHHHH
Q psy2427 113 AVGGGSVIDTCKAAN 127 (660)
Q Consensus 113 avGGGsviD~AK~~a 127 (660)
+.....++-+.+++.
T Consensus 192 ~~~d~~a~g~~~al~ 206 (291)
T 3egc_A 192 TSSHRITEGAMQALN 206 (291)
T ss_dssp ESSHHHHHHHHHHHH
T ss_pred ECCcHHHHHHHHHHH
Confidence 987766665555543
No 224
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=40.83 E-value=78 Score=29.97 Aligned_cols=83 Identities=16% Similarity=0.144 Sum_probs=50.1
Q ss_pred EECcChH-HHHHHHHHh--cCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHH-HHHHHHhHhcC
Q psy2427 32 RIGPGVT-REVGMDMVN--MKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSF-LEATKFVRSVQ 107 (660)
Q Consensus 32 ~~G~g~~-~~l~~~l~~--~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v-~~~~~~~~~~~ 107 (660)
+.|.|.- ..|-+.++. ++.+=++|||++.-. ..++..++.|+.+.+++.. .-.+.+.. .++.+.+++.+
T Consensus 7 ~SG~Gs~L~aLi~~~~~~~~~~~I~~Vvs~~~~~------~~~~~A~~~gIp~~~~~~~-~~~~r~~~~~~~~~~l~~~~ 79 (209)
T 1meo_A 7 ISGTGSNLQALIDSTREPNSSAQIDIVISNKAAV------AGLDKAERAGIPTRVINHK-LYKNRVEFDSAIDLVLEEFS 79 (209)
T ss_dssp ESSSCTTHHHHHHHHHSTTCSCEEEEEEESSTTC------HHHHHHHHTTCCEEECCGG-GSSSHHHHHHHHHHHHHHTT
T ss_pred EECCchHHHHHHHHHhcCCCCcEEEEEEeCCCCh------HHHHHHHHcCCCEEEECcc-ccCchhhhhHHHHHHHHhcC
Confidence 3466642 334444333 244557788886421 1234556789998765432 22343333 45678888999
Q ss_pred CCEEEEecCchhhh
Q psy2427 108 CDAFIAVGGGSVID 121 (660)
Q Consensus 108 ~D~IIavGGGsviD 121 (660)
+|+||.+|=|..+-
T Consensus 80 ~Dliv~a~y~~il~ 93 (209)
T 1meo_A 80 IDIVCLAGFMRILS 93 (209)
T ss_dssp CCEEEEESCCSCCC
T ss_pred CCEEEEcchhhhCC
Confidence 99999999876653
No 225
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=40.82 E-value=1.1e+02 Score=26.92 Aligned_cols=73 Identities=7% Similarity=0.048 Sum_probs=52.8
Q ss_pred cChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEe
Q psy2427 35 PGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAV 114 (660)
Q Consensus 35 ~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIav 114 (660)
..-+..|.+.+.....++++|.+... . ..+.+.+.|.+.|+.+..+.+ .-+...-.++.+.+++...+++|+-
T Consensus 20 ~~K~~~L~~ll~~~~~~~~lVF~~~~-~---~~~~l~~~L~~~~~~~~~~hg---~~~~~~r~~~~~~f~~g~~~vlv~T 92 (163)
T 2hjv_A 20 ENKFSLLKDVLMTENPDSCIIFCRTK-E---HVNQLTDELDDLGYPCDKIHG---GMIQEDRFDVMNEFKRGEYRYLVAT 92 (163)
T ss_dssp GGHHHHHHHHHHHHCCSSEEEECSSH-H---HHHHHHHHHHHTTCCEEEECT---TSCHHHHHHHHHHHHTTSCSEEEEC
T ss_pred HHHHHHHHHHHHhcCCCcEEEEECCH-H---HHHHHHHHHHHcCCcEEEEeC---CCCHHHHHHHHHHHHcCCCeEEEEC
Confidence 44566677777776657888777543 1 237788889888998877654 4566777788888888888888875
No 226
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=40.75 E-value=1.2e+02 Score=30.21 Aligned_cols=85 Identities=9% Similarity=-0.002 Sum_probs=51.3
Q ss_pred HHHHhcCC-CEEEEEECcccccc-chHHHHHHHHHhCCCeEEEEeCcccC-CCHHHHHHHHHHhHhcCCCEEEEecCchh
Q psy2427 43 MDMVNMKA-QRVCVMTDPHLSKL-APVKATLDSLTRHGVKFELFDKVRVE-PTGDSFLEATKFVRSVQCDAFIAVGGGSV 119 (660)
Q Consensus 43 ~~l~~~g~-~r~liVtd~~~~~~-~~~~~i~~~L~~~gi~~~~~~~~~~~-p~~~~v~~~~~~~~~~~~D~IIavGGGsv 119 (660)
..+.+.|. +|+.+|++...... ....-..+.+++.+..+.+....... .+.+.-.++++.+.+.++|+|++..++..
T Consensus 121 ~~l~~~Gh~r~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~~d~~a 200 (318)
T 2fqx_A 121 ALKAKEAGKSAVGFIVGMELGMMPLFEAGFEAGVKAVDPDIQVVVEVANTFSDPQKGQALAAKLYDSGVNVIFQVAGGTG 200 (318)
T ss_dssp HHHHHHTTCCEEEEEESCCSTTTHHHHHHHHHHHHHHCTTCEEEEEECSCSSCHHHHHHHHHHHHHTTCCEEEEECGGGH
T ss_pred HHHhccCCCcEEEEEeCcccHHHHHHHHHHHHHHHHHCCCCEEEEEEccCccCHHHHHHHHHHHHHCCCcEEEECCCCCc
Confidence 56677786 79999987643211 12234556677666543321111122 34455566666666678999999988877
Q ss_pred hhHHHHHH
Q psy2427 120 IDTCKAAN 127 (660)
Q Consensus 120 iD~AK~~a 127 (660)
+-+-+++.
T Consensus 201 ~Gv~~a~~ 208 (318)
T 2fqx_A 201 NGVIKEAR 208 (318)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 66666554
No 227
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=40.35 E-value=41 Score=38.55 Aligned_cols=56 Identities=16% Similarity=0.177 Sum_probs=41.3
Q ss_pred HHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCc
Q psy2427 94 DSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGT 167 (660)
Q Consensus 94 ~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gt 167 (660)
+...++++.++++++|.+|.|||--.++.|..++.....- ..-.+|+|.||-|.-.
T Consensus 470 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~------------------~~~~i~vIgiPkTIDN 525 (787)
T 3o8o_A 470 EDLGTIAYYFQKNKLDGLIILGGFEGFRSLKQLRDGRTQH------------------PIFNIPMCLIPATVSN 525 (787)
T ss_dssp GCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTTC------------------GGGGSCEEEEEBCTTC
T ss_pred hhHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhc------------------CccCCceeeccccccc
Confidence 3577889999999999999999988888877765432100 0001899999999743
No 228
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=40.17 E-value=1.9e+02 Score=29.09 Aligned_cols=79 Identities=10% Similarity=0.024 Sum_probs=46.2
Q ss_pred HHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCC----------CH------------HHHHH
Q psy2427 41 VGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEP----------TG------------DSFLE 98 (660)
Q Consensus 41 l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p----------~~------------~~v~~ 98 (660)
|.+.|.+.| .++.+++.+. ..+.++..|+.+..+....+.. .. ..+.+
T Consensus 24 La~~L~~~G-heV~v~~~~~---------~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (402)
T 3ia7_A 24 LVSELARRG-HRITYVTTPL---------FADEVKAAGAEVVLYKSEFDTFHVPEVVKQEDAETQLHLVYVRENVAILRA 93 (402)
T ss_dssp HHHHHHHTT-CEEEEEECHH---------HHHHHHHTTCEEEECCCGGGTSSSSSSSCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCC-CEEEEEcCHH---------HHHHHHHcCCEEEecccccccccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 567777888 6888888633 2334566788877664311110 00 12456
Q ss_pred HHHHhHhcCCCEEEEecCchhhhHHHHHHhHhc
Q psy2427 99 ATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYC 131 (660)
Q Consensus 99 ~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~ 131 (660)
+.+.+++.++|+||.=+ ...-.+..+|...+
T Consensus 94 l~~~l~~~~pD~Vi~d~--~~~~~~~~aA~~~g 124 (402)
T 3ia7_A 94 AEEALGDNPPDLVVYDV--FPFIAGRLLAARWD 124 (402)
T ss_dssp HHHHHTTCCCSEEEEES--TTHHHHHHHHHHHT
T ss_pred HHHHHhccCCCEEEECc--hHHHHHHHHHHhhC
Confidence 67777889999999721 22223455554443
No 229
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=40.13 E-value=69 Score=31.62 Aligned_cols=85 Identities=7% Similarity=-0.019 Sum_probs=47.8
Q ss_pred cChHHHHHHHHHhc--CCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh-cCCCEE
Q psy2427 35 PGVTREVGMDMVNM--KAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS-VQCDAF 111 (660)
Q Consensus 35 ~g~~~~l~~~l~~~--g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~D~I 111 (660)
.+..+.|.+.+... ..+|++++.+.... +.+.+.|++.|+.+..+.-++..+..+....+.+.+++ .++|.|
T Consensus 140 ~~~ae~L~~~l~~~~~~g~~vLi~rg~~~r-----~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~~d~v 214 (286)
T 1jr2_A 140 CGNAEKLAEYICSRESSALPLLFPCGNLKR-----EILPKALKDKGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASI 214 (286)
T ss_dssp CSSHHHHHHHHHTSCCCSSCEEEEESCGGG-----CCHHHHHHTTTCCEEEEECEEEEECTTHHHHHHHHHHHHCSCSEE
T ss_pred ccCHHHHHHHHHhcccCCCeEEEECChhhH-----HHHHHHHHHCCCeeEEEEEEEEeeCCCcHHHHHHHHHhCCCCCEE
Confidence 44556677777653 23799998887643 34778899999877644433333222222333344444 567876
Q ss_pred EEecCchhhhHHH
Q psy2427 112 IAVGGGSVIDTCK 124 (660)
Q Consensus 112 IavGGGsviD~AK 124 (660)
+=.=+-++--..+
T Consensus 215 ~ftS~~~v~~f~~ 227 (286)
T 1jr2_A 215 TFFSPSGLTYSLK 227 (286)
T ss_dssp EESSHHHHHHHHH
T ss_pred EEEChHHHHHHHH
Confidence 6554333333333
No 230
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=40.02 E-value=1.1e+02 Score=29.70 Aligned_cols=53 Identities=13% Similarity=-0.019 Sum_probs=38.8
Q ss_pred hHHHHHHHHHhC-CCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 66 PVKATLDSLTRH-GVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 66 ~~~~i~~~L~~~-gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
..+-+.+.+++. |..+.++.....+.+.+...+.++.+...++|.||-.+...
T Consensus 27 ~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~ 80 (304)
T 3gbv_A 27 VQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVP 80 (304)
T ss_dssp HHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSG
T ss_pred HHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCCh
Confidence 456677788887 77777654333355677777888888899999999987643
No 231
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=39.86 E-value=1.8e+02 Score=28.70 Aligned_cols=86 Identities=13% Similarity=0.135 Sum_probs=57.7
Q ss_pred HHHHHHHHhc--CCCEEEEEECccccc-cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEec
Q psy2427 39 REVGMDMVNM--KAQRVCVMTDPHLSK-LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVG 115 (660)
Q Consensus 39 ~~l~~~l~~~--g~~r~liVtd~~~~~-~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavG 115 (660)
.+--+.+.++ +.+|+.|+++++-.. ....+.+++.+++.|+++..+.. .+..++.++.+.+.. +.|+|....
T Consensus 127 ~~~l~l~~~l~P~~k~vgvi~~~~~~~s~~~~~~~~~~~~~~g~~~v~~~~----~~~~~~~~~~~~l~~-~~d~i~~~~ 201 (302)
T 3lkv_A 127 EQHVELIKEILPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATA----LKSADVQSATQAIAE-KSDVIYALI 201 (302)
T ss_dssp HHHHHHHHHHSTTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEEC----SSGGGHHHHHHHHHT-TCSEEEECS
T ss_pred HHHHHHHHHhCCCCCEEEEEeCCCcccHHHHHHHHHHHHHHcCCEEEEEec----CChHHHHHHHHhccC-CeeEEEEeC
Confidence 3333444442 568999999886332 23457788888899998876542 344556666666554 789999998
Q ss_pred CchhhhHHHHHHhH
Q psy2427 116 GGSVIDTCKAANLY 129 (660)
Q Consensus 116 GGsviD~AK~~a~~ 129 (660)
.+.+....+.+...
T Consensus 202 d~~~~~~~~~i~~~ 215 (302)
T 3lkv_A 202 DNTVASAIEGMIVA 215 (302)
T ss_dssp CHHHHHTHHHHHHH
T ss_pred CcchhhHHHHHHHH
Confidence 88887776665443
No 232
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=39.71 E-value=1.3e+02 Score=26.92 Aligned_cols=74 Identities=9% Similarity=0.028 Sum_probs=53.4
Q ss_pred cChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEe
Q psy2427 35 PGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAV 114 (660)
Q Consensus 35 ~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIav 114 (660)
..-+..|.+.+.....++++|.+...- ..+.+.+.|...|+.+..+.+ .-+...-.++.+.++....+++|+-
T Consensus 16 ~~K~~~L~~ll~~~~~~~~lVF~~~~~----~~~~l~~~L~~~~~~~~~~hg---~~~~~~r~~~~~~f~~g~~~vLvaT 88 (172)
T 1t5i_A 16 NEKNRKLFDLLDVLEFNQVVIFVKSVQ----RCIALAQLLVEQNFPAIAIHR---GMPQEERLSRYQQFKDFQRRILVAT 88 (172)
T ss_dssp GGHHHHHHHHHHHSCCSSEEEECSSHH----HHHHHHHHHHHTTCCEEEECT---TSCHHHHHHHHHHHHTTSCSEEEES
T ss_pred HHHHHHHHHHHHhCCCCcEEEEECCHH----HHHHHHHHHHhcCCCEEEEEC---CCCHHHHHHHHHHHHCCCCcEEEEC
Confidence 445666777777776577887776542 237788889888998877654 4566777788888888788888875
Q ss_pred c
Q psy2427 115 G 115 (660)
Q Consensus 115 G 115 (660)
.
T Consensus 89 ~ 89 (172)
T 1t5i_A 89 N 89 (172)
T ss_dssp S
T ss_pred C
Confidence 3
No 233
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=39.71 E-value=67 Score=32.01 Aligned_cols=86 Identities=8% Similarity=0.052 Sum_probs=51.9
Q ss_pred HHHHHHHHh--cCCCEEEEEECccccc--cchHHHHHHHHHhC-CCeEEEEeCcccCCCHHHHHHHHHHhHh---cCCCE
Q psy2427 39 REVGMDMVN--MKAQRVCVMTDPHLSK--LAPVKATLDSLTRH-GVKFELFDKVRVEPTGDSFLEATKFVRS---VQCDA 110 (660)
Q Consensus 39 ~~l~~~l~~--~g~~r~liVtd~~~~~--~~~~~~i~~~L~~~-gi~~~~~~~~~~~p~~~~v~~~~~~~~~---~~~D~ 110 (660)
..+.++|.+ .|.+|+.+|++..-.. ....+-+.+.|++. |+++... ...+.+.+...+.++.+.+ .++|+
T Consensus 123 ~~a~~~L~~~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~pgi~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~~a 200 (332)
T 2rjo_A 123 EETATQLFKSMGGKGGVVALGGIFSNVPAIERKAGLDAALKKFPGIQLLDF--QVADWNSQKAFPIMQAWMTRFNSKIKG 200 (332)
T ss_dssp HHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHHTCTTEEEEEE--EECTTCHHHHHHHHHHHHHHHGGGEEE
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEee--ccCCCCHHHHHHHHHHHHHhcCCCeeE
Confidence 446677777 6888999998763211 11234467788888 8765421 2234455555555444433 36899
Q ss_pred EEEecCchhhhHHHHH
Q psy2427 111 FIAVGGGSVIDTCKAA 126 (660)
Q Consensus 111 IIavGGGsviD~AK~~ 126 (660)
|++.....++-+.+++
T Consensus 201 I~~~nd~~A~g~~~al 216 (332)
T 2rjo_A 201 VWAANDDMALGAIEAL 216 (332)
T ss_dssp EEESSHHHHHHHHHHH
T ss_pred EEECCCchHHHHHHHH
Confidence 9998776665555544
No 234
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=39.56 E-value=78 Score=30.20 Aligned_cols=80 Identities=15% Similarity=0.161 Sum_probs=50.8
Q ss_pred EE--CcChHHHHHHHHHh----cCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHH-HHHHHHhH
Q psy2427 32 RI--GPGVTREVGMDMVN----MKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSF-LEATKFVR 104 (660)
Q Consensus 32 ~~--G~g~~~~l~~~l~~----~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v-~~~~~~~~ 104 (660)
+| |.|. .+-..+.. ++.+=++||+++.. ..++.-++.|+.+..+ .....++.+.. .++.+.++
T Consensus 17 vl~SG~gs--nl~all~~~~~~~~~eI~~Vis~~~a-------~~~~~A~~~gIp~~~~-~~~~~~~r~~~d~~~~~~l~ 86 (215)
T 3da8_A 17 VLASGTGS--LLRSLLDAAVGDYPARVVAVGVDREC-------RAAEIAAEASVPVFTV-RLADHPSRDAWDVAITAATA 86 (215)
T ss_dssp EEESSCCH--HHHHHHHHSSTTCSEEEEEEEESSCC-------HHHHHHHHTTCCEEEC-CGGGSSSHHHHHHHHHHHHH
T ss_pred EEEeCChH--HHHHHHHHHhccCCCeEEEEEeCCch-------HHHHHHHHcCCCEEEe-CcccccchhhhhHHHHHHHH
Confidence 56 6664 33343433 22345678888751 1344556779998876 34444554443 45678899
Q ss_pred hcCCCEEEEecCchhhh
Q psy2427 105 SVQCDAFIAVGGGSVID 121 (660)
Q Consensus 105 ~~~~D~IIavGGGsviD 121 (660)
+.++|+||.+|=|.++.
T Consensus 87 ~~~~Dlivlagy~~iL~ 103 (215)
T 3da8_A 87 AHEPDLVVSAGFMRILG 103 (215)
T ss_dssp TTCCSEEEEEECCSCCC
T ss_pred hhCCCEEEEcCchhhCC
Confidence 99999999999887754
No 235
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=39.54 E-value=1.3e+02 Score=25.16 Aligned_cols=63 Identities=14% Similarity=0.042 Sum_probs=40.4
Q ss_pred EEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 52 RVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 52 r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
+++||.|.... ...+...|+..|+.+..+. +..++.+.++...+|+||- +.+..-+++.+.+.
T Consensus 6 ~ILivdd~~~~----~~~l~~~L~~~g~~v~~~~---------~~~~a~~~l~~~~~dlvllD~~l~~~~g~~l~~~l~ 71 (137)
T 3cfy_A 6 RVLLVEDSTSL----AILYKQYVKDEPYDIFHVE---------TGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWIN 71 (137)
T ss_dssp EEEEECSCTTH----HHHHHHHTTTSSSEEEEES---------SHHHHHHHHHHHCCSEEEECSBCSSSBHHHHHHHHH
T ss_pred eEEEEeCCHHH----HHHHHHHHHhcCceEEEeC---------CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence 78888776542 2556777777777655432 2344556666778998874 45666677777664
No 236
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=39.45 E-value=86 Score=30.41 Aligned_cols=87 Identities=3% Similarity=-0.089 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCCCEEEEEECccccc--cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh--cCCCEEEEe
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS--VQCDAFIAV 114 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~IIav 114 (660)
..+.++|.+.|.+|+.++++..-.. ....+-+.+.|++.|++.... ...+.+.+...+..+.+.+ .++|+|++.
T Consensus 127 ~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 204 (293)
T 2iks_A 127 EMLAEELRKFPAETVLYLGALPELSVSFLREQGFRTAWKDDPREVHFL--YANSYEREAAAQLFEKWLETHPMPQALFTT 204 (293)
T ss_dssp HHHHHHHHTSCCSSEEEEEECTTSHHHHHHHHHHHHHHTTCCCCEEEE--EESSSCHHHHHHHHHHHTTTSCCCSEEEES
T ss_pred HHHHHHHHHCCCCEEEEEecCcccccHHHHHHHHHHHHHHcCCCccEE--EcCCCChhhHHHHHHHHHhcCCCCCEEEEC
Confidence 3467788888999999998753211 112344677888888743322 1224456655555555433 358999998
Q ss_pred cCchhhhHHHHHH
Q psy2427 115 GGGSVIDTCKAAN 127 (660)
Q Consensus 115 GGGsviD~AK~~a 127 (660)
....++-+.+++.
T Consensus 205 ~d~~a~g~~~al~ 217 (293)
T 2iks_A 205 SFALLQGVMDVTL 217 (293)
T ss_dssp SHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHH
Confidence 8776666666553
No 237
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=39.41 E-value=1.7e+02 Score=24.42 Aligned_cols=65 Identities=14% Similarity=0.076 Sum_probs=41.3
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhH--hcCCCEEEE---ecCchhhhHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVR--SVQCDAFIA---VGGGSVIDTCKA 125 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~--~~~~D~IIa---vGGGsviD~AK~ 125 (660)
.|++||.|.... .+.+...|++.|..+..+.. ..++.+.++ ...+|+||. +.+...+++.+.
T Consensus 4 ~~ilivdd~~~~----~~~l~~~l~~~g~~v~~~~~---------~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~ 70 (143)
T 3jte_A 4 AKILVIDDESTI----LQNIKFLLEIDGNEVLTASS---------STEGLRIFTENCNSIDVVITDMKMPKLSGMDILRE 70 (143)
T ss_dssp CEEEEECSCHHH----HHHHHHHHHHTTCEEEEESS---------HHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHH
T ss_pred CEEEEEcCCHHH----HHHHHHHHHhCCceEEEeCC---------HHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHH
Confidence 578888775532 35677788888877665432 244455555 467897775 356667777776
Q ss_pred HHh
Q psy2427 126 ANL 128 (660)
Q Consensus 126 ~a~ 128 (660)
+..
T Consensus 71 l~~ 73 (143)
T 3jte_A 71 IKK 73 (143)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 238
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=39.39 E-value=1.2e+02 Score=25.22 Aligned_cols=65 Identities=12% Similarity=0.055 Sum_probs=40.0
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE-e--c-----CchhhhH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA-V--G-----GGSVIDT 122 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa-v--G-----GGsviD~ 122 (660)
.|++||.+... ....+...|++.|+.+..+. +..++.+.+++..+|+||- + . +...+++
T Consensus 4 ~~ilivdd~~~----~~~~l~~~L~~~g~~v~~~~---------~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~ 70 (140)
T 2qr3_A 4 GTIIIVDDNKG----VLTAVQLLLKNHFSKVITLS---------SPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFW 70 (140)
T ss_dssp CEEEEECSCHH----HHHHHHHHHTTTSSEEEEEC---------CHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHH
T ss_pred ceEEEEeCCHH----HHHHHHHHHHhCCcEEEEeC---------CHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHH
Confidence 57888876653 23567778887787766442 2355566667777897764 2 2 4556666
Q ss_pred HHHHHh
Q psy2427 123 CKAANL 128 (660)
Q Consensus 123 AK~~a~ 128 (660)
.+.+..
T Consensus 71 ~~~l~~ 76 (140)
T 2qr3_A 71 LHEIKR 76 (140)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 665543
No 239
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=38.78 E-value=30 Score=33.61 Aligned_cols=79 Identities=14% Similarity=0.131 Sum_probs=46.7
Q ss_pred hHHHHHHHHH-----hcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEE
Q psy2427 37 VTREVGMDMV-----NMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAF 111 (660)
Q Consensus 37 ~~~~l~~~l~-----~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~I 111 (660)
..+.|.+.+. ....+|++++.+.... +.+.+.|++.|+++..+.-++..+......++.+.+...++|.|
T Consensus 115 ~~e~L~~~l~~~~~~~~~~~~vL~~rg~~~r-----~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v 189 (254)
T 4es6_A 115 DSEALLALPAFQDSLRVHDPKVLIMRGEGGR-----EFLAERLRGQGVQVDYLPLYRRRAPDYPAGELLARVRAERLNGL 189 (254)
T ss_dssp SHHHHHTCHHHHHHTCSSSCEEEEEECSSCC-----CHHHHHHHHTTCEEEEEECEEEECCCCCTTHHHHHHHHTTCCEE
T ss_pred CHHHHHHhHhhcccccCCCCEEEEEcCCccH-----HHHHHHHHHCCCEEEEEeEEEeeCCCCCHHHHHHHHHhCCCCEE
Confidence 3455665554 3344899999887643 45788898899876643333322222222333444556678877
Q ss_pred EEecCchhhh
Q psy2427 112 IAVGGGSVID 121 (660)
Q Consensus 112 IavGGGsviD 121 (660)
+ +-.++..+
T Consensus 190 ~-ftS~s~v~ 198 (254)
T 4es6_A 190 V-VSSGQGLQ 198 (254)
T ss_dssp E-CCSHHHHH
T ss_pred E-EcCHHHHH
Confidence 6 76666654
No 240
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=38.64 E-value=1.5e+02 Score=23.79 Aligned_cols=64 Identities=20% Similarity=0.163 Sum_probs=40.0
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
+|++||-|.... .+.+...|+..|+.+..+. + ..++.+.+++..+|+||- +.+..-+++.+.+.
T Consensus 2 ~~ilivdd~~~~----~~~l~~~L~~~~~~v~~~~------~---~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~ 68 (124)
T 1mb3_A 2 KKVLIVEDNELN----MKLFHDLLEAQGYETLQTR------E---GLSALSIARENKPDLILMDIQLPEISGLEVTKWLK 68 (124)
T ss_dssp CEEEEECSCHHH----HHHHHHHHHHTTCEEEEES------C---HHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHH
T ss_pred cEEEEEcCCHHH----HHHHHHHHHHcCcEEEEeC------C---HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 577888776532 2556777777787765432 2 234555666678998773 45666677766654
No 241
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=38.45 E-value=1.4e+02 Score=26.68 Aligned_cols=63 Identities=13% Similarity=-0.009 Sum_probs=41.2
Q ss_pred EEEEEECccccccchHHHHHHHHHhCCCeEEEEeCccc-CCC-HHHHHHHHHHhHhcCCCEEEEecC
Q psy2427 52 RVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRV-EPT-GDSFLEATKFVRSVQCDAFIAVGG 116 (660)
Q Consensus 52 r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~-~p~-~~~v~~~~~~~~~~~~D~IIavGG 116 (660)
|+.|-+|..-.+ +-+.+++.|++.|.++.-|.-... ..+ .+....+++.+.+..+|.-|-+.|
T Consensus 3 kIaigsDhaG~~--lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCG 67 (149)
T 2vvr_A 3 KIAFGCDHVGFI--LKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGEVDGGILICG 67 (149)
T ss_dssp EEEEEECTTGGG--GHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEES
T ss_pred EEEEEeCchhHH--HHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEeC
Confidence 567777776444 347899999999999887633222 223 445556666677777886665554
No 242
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=38.42 E-value=1.1e+02 Score=29.97 Aligned_cols=48 Identities=13% Similarity=0.209 Sum_probs=34.9
Q ss_pred hHHHHHHHHHhCCC----e--EEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC
Q psy2427 66 PVKATLDSLTRHGV----K--FELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG 116 (660)
Q Consensus 66 ~~~~i~~~L~~~gi----~--~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG 116 (660)
..+-+.+.+++.|. . +.+++ .+-+.+...+.++.+.+.++|.||.+|.
T Consensus 25 ~~~gi~~~l~~~Gy~~g~~v~l~~~~---~~~~~~~~~~~~~~l~~~~vDgII~~~~ 78 (302)
T 2qh8_A 25 TRQGLLDGLKAKGYEEGKNLEFDYKT---AQGNPAIAVQIARQFVGENPDVLVGIAT 78 (302)
T ss_dssp HHHHHHHHHHHTTCCBTTTEEEEEEE---CTTCHHHHHHHHHHHHHTCCSEEEEESH
T ss_pred HHHHHHHHHHHcCCCCCCceEEEEec---CCCCHHHHHHHHHHHHhCCCCEEEECCh
Confidence 44667788888888 4 33333 2455667778888889999999999873
No 243
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=38.40 E-value=14 Score=36.43 Aligned_cols=23 Identities=39% Similarity=0.697 Sum_probs=17.6
Q ss_pred HhcCCCEEEEecC-chhhhHHHHH
Q psy2427 104 RSVQCDAFIAVGG-GSVIDTCKAA 126 (660)
Q Consensus 104 ~~~~~D~IIavGG-GsviD~AK~~ 126 (660)
...++|+||++|| |+++-+++.+
T Consensus 38 ~~~~~D~vv~~GGDGTll~~a~~~ 61 (258)
T 1yt5_A 38 GRVTADLIVVVGGDGTVLKAAKKA 61 (258)
T ss_dssp SCBCCSEEEEEECHHHHHHHHTTB
T ss_pred ccCCCCEEEEEeCcHHHHHHHHHh
Confidence 3457899999999 7777776654
No 244
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=38.31 E-value=2e+02 Score=27.52 Aligned_cols=49 Identities=12% Similarity=0.071 Sum_probs=35.6
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
..+-+.+.+++.|+.+.+++. +.+.+.-.+..+.+...++|.||..+..
T Consensus 20 ~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 68 (290)
T 2fn9_A 20 LAETAKQRAEQLGYEATIFDS---QNDTAKESAHFDAIIAAGYDAIIFNPTD 68 (290)
T ss_dssp HHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred HHHHHHHHHHHcCCEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 456677888889998877643 3345566667777778899999988653
No 245
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=38.27 E-value=62 Score=30.90 Aligned_cols=86 Identities=9% Similarity=0.053 Sum_probs=53.8
Q ss_pred HHHHHHHHhc----CCCEEEEEECccccc--cchHHHHHHHHHhC-CCeEEEEeCcccCCCHHHHHHHHHHhHhc--CCC
Q psy2427 39 REVGMDMVNM----KAQRVCVMTDPHLSK--LAPVKATLDSLTRH-GVKFELFDKVRVEPTGDSFLEATKFVRSV--QCD 109 (660)
Q Consensus 39 ~~l~~~l~~~----g~~r~liVtd~~~~~--~~~~~~i~~~L~~~-gi~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~D 109 (660)
..+.++|.+. |.+|+.+++++.-.. ....+-+++.+++. |+++. .....+.+.+...+.++.+... ++|
T Consensus 112 ~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~ 189 (276)
T 3ksm_A 112 QLAARALLATLDLSKERNIALLRLRAGNASTDQREQGFLDVLRKHDKIRII--AAPYAGDDRGAARSEMLRLLKETPTID 189 (276)
T ss_dssp HHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHHHHHHHHTTCTTEEEE--ECCBCCSSHHHHHHHHHHHHHHCSCCC
T ss_pred HHHHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHHHHHHHHHhCCCcEEE--EEecCCCcHHHHHHHHHHHHHhCCCce
Confidence 4467777777 889999998753211 12335567778777 77654 2333455666666655554432 579
Q ss_pred EEEEecCchhhhHHHHH
Q psy2427 110 AFIAVGGGSVIDTCKAA 126 (660)
Q Consensus 110 ~IIavGGGsviD~AK~~ 126 (660)
+|++.....++-+.+++
T Consensus 190 ai~~~~d~~a~g~~~al 206 (276)
T 3ksm_A 190 GLFTPNESTTIGALVAI 206 (276)
T ss_dssp EEECCSHHHHHHHHHHH
T ss_pred EEEECCchhhhHHHHHH
Confidence 99998776665555544
No 246
>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A*
Probab=38.26 E-value=1.7e+02 Score=25.82 Aligned_cols=88 Identities=7% Similarity=-0.089 Sum_probs=53.0
Q ss_pred ceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh-cC
Q psy2427 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS-VQ 107 (660)
Q Consensus 29 ~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~-~~ 107 (660)
..++.|.-........|.+.|++-+ | +...-.+......+.+.+++.|..+..+..--..++.+.+.++++.+.+ ++
T Consensus 20 ~~l~~s~~p~~a~a~~La~~Ga~vv-i-~~r~~~e~~~~~~~~~~~~~~G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G 97 (157)
T 3gxh_A 20 PQLLSSGLPNEQQFSLLKQAGVDVV-I-NLMPDSSKDAHPDEGKLVTQAGMDYVYIPVDWQNPKVEDVEAFFAAMDQHKG 97 (157)
T ss_dssp TTEEEEBCCCHHHHHHHHHTTCCEE-E-ECSCTTSTTSCTTHHHHHHHTTCEEEECCCCTTSCCHHHHHHHHHHHHHTTT
T ss_pred CceeEcCCCCHHHHHHHHHcCCCEE-E-ECCCcccccccccHHHHHHHcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCC
Confidence 3555555445566677888896543 3 3332111111123455666778887655432345667999999998876 45
Q ss_pred CCEEEEecCch
Q psy2427 108 CDAFIAVGGGS 118 (660)
Q Consensus 108 ~D~IIavGGGs 118 (660)
-|.+|---||.
T Consensus 98 ~dVLVnnAgg~ 108 (157)
T 3gxh_A 98 KDVLVHCLANY 108 (157)
T ss_dssp SCEEEECSBSH
T ss_pred CCEEEECCCCC
Confidence 59888776664
No 247
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=38.20 E-value=1.7e+02 Score=24.28 Aligned_cols=64 Identities=19% Similarity=0.116 Sum_probs=42.2
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
.+++||-|.... .+.+...|++.|+.+..+. +..++.+.+++..+|+||- +.|..-+++.+.+.
T Consensus 5 ~~iLivdd~~~~----~~~l~~~L~~~g~~v~~~~---------~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr 71 (136)
T 3t6k_A 5 HTLLIVDDDDTV----AEMLELVLRGAGYEVRRAA---------SGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVR 71 (136)
T ss_dssp CEEEEECSCHHH----HHHHHHHHHHTTCEEEEES---------SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred CEEEEEeCCHHH----HHHHHHHHHHCCCEEEEeC---------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 578888776532 2557777888887765442 2345666777788998875 45666677776654
No 248
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=38.20 E-value=43 Score=30.33 Aligned_cols=61 Identities=13% Similarity=0.115 Sum_probs=43.1
Q ss_pred HHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc-CCCEEEEecCchhh--hHHHHHHhHh
Q psy2427 68 KATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV-QCDAFIAVGGGSVI--DTCKAANLYY 130 (660)
Q Consensus 68 ~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~-~~D~IIavGGGsvi--D~AK~~a~~~ 130 (660)
.-+.+.|++.|+++..+.-++ =+.+.+.+.++.+.+. ++|+||--||=++. |..+-+...+
T Consensus 24 ~~l~~~l~~~G~~v~~~~iv~--Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~~D~t~ea~~~~ 87 (164)
T 2is8_A 24 LAIREVLAGGPFEVAAYELVP--DEPPMIKKVLRLWADREGLDLILTNGGTGLAPRDRTPEATREL 87 (164)
T ss_dssp HHHHHHHTTSSEEEEEEEEEC--SCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCCHHHHHHTT
T ss_pred HHHHHHHHHCCCeEeEEEEcC--CCHHHHHHHHHHHHhcCCCCEEEEcCCCCCCCCCChHHHHHHH
Confidence 557888888898776544332 2357777777776664 79999999998776 8777554433
No 249
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=38.05 E-value=1.3e+02 Score=28.69 Aligned_cols=81 Identities=9% Similarity=0.063 Sum_probs=50.3
Q ss_pred CcChHHH-HHHHHHh-cCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHH-HHHHHHHhHhcCCCE
Q psy2427 34 GPGVTRE-VGMDMVN-MKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDS-FLEATKFVRSVQCDA 110 (660)
Q Consensus 34 G~g~~~~-l~~~l~~-~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~-v~~~~~~~~~~~~D~ 110 (660)
|.|.--+ |-+.+.. ++.+-++|||++.-. . .++.-++.|+.+..++. ...++.+. =.++.+.+++.++|+
T Consensus 14 G~Gsnl~all~~~~~~~~~eI~~Vis~~~~a---~---~~~~A~~~gIp~~~~~~-~~~~~r~~~d~~~~~~l~~~~~Dl 86 (215)
T 3tqr_A 14 GNGTNLQAIIGAIQKGLAIEIRAVISNRADA---Y---GLKRAQQADIPTHIIPH-EEFPSRTDFESTLQKTIDHYDPKL 86 (215)
T ss_dssp SCCHHHHHHHHHHHTTCSEEEEEEEESCTTC---H---HHHHHHHTTCCEEECCG-GGSSSHHHHHHHHHHHHHTTCCSE
T ss_pred CCcHHHHHHHHHHHcCCCCEEEEEEeCCcch---H---HHHHHHHcCCCEEEeCc-cccCchhHhHHHHHHHHHhcCCCE
Confidence 7775432 4444443 344567788875421 1 13445567999886642 22344433 346788899999999
Q ss_pred EEEecCchhhh
Q psy2427 111 FIAVGGGSVID 121 (660)
Q Consensus 111 IIavGGGsviD 121 (660)
||.+|=|.++.
T Consensus 87 iv~agy~~il~ 97 (215)
T 3tqr_A 87 IVLAGFMRKLG 97 (215)
T ss_dssp EEESSCCSCCC
T ss_pred EEEccchhhCC
Confidence 99999887764
No 250
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=38.03 E-value=34 Score=39.13 Aligned_cols=57 Identities=14% Similarity=0.174 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCc
Q psy2427 93 GDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGT 167 (660)
Q Consensus 93 ~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gt 167 (660)
.+..+++++.++++++|.+|.|||--.++.|..++..... | ..-.+|+|.||-|.-.
T Consensus 475 ~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~-------~-----------~~~~i~vvgiPkTIDN 531 (762)
T 3o8l_A 475 KKSFEQISANITKFNIQGLVIIGGFEAYTGGLELMEGRKQ-------F-----------DELCIPFVVIPATVSN 531 (762)
T ss_dssp GGGHHHHHHHHHHTTCCCEEEEESHHHHHHHHHHHHHHHH-------C-----------STTCSCEEEEEBCTTC
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHh-------c-----------cccCCCEEeeccccCC
Confidence 4678999999999999999999998888888776543210 0 0011899999999733
No 251
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=37.65 E-value=1.5e+02 Score=23.54 Aligned_cols=64 Identities=14% Similarity=0.073 Sum_probs=38.6
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
.|++||-|.... .+.+...|+..|+.+..+. + ..++.+.++...+|+||- ..+..-+++.+.+.
T Consensus 2 ~~ilivdd~~~~----~~~l~~~l~~~~~~v~~~~------~---~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~ 68 (120)
T 2a9o_A 2 KKILIVDDEKPI----SDIIKFNMTKEGYEVVTAF------N---GREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIR 68 (120)
T ss_dssp CEEEEECSCHHH----HHHHHHHHHHTTCEEEEES------S---HHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHH
T ss_pred ceEEEEcCCHHH----HHHHHHHHHhcCcEEEEec------C---HHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHH
Confidence 467777665432 2556677777787765432 1 234455556678898774 45556667766654
No 252
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=37.57 E-value=1.1e+02 Score=32.63 Aligned_cols=73 Identities=14% Similarity=0.067 Sum_probs=44.5
Q ss_pred hcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEE-eCcccCCC----------HHHHHHHHHHhHhcCCCEEEEec
Q psy2427 47 NMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELF-DKVRVEPT----------GDSFLEATKFVRSVQCDAFIAVG 115 (660)
Q Consensus 47 ~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~-~~~~~~p~----------~~~v~~~~~~~~~~~~D~IIavG 115 (660)
.++.||++|.+|+... -.+.+.|.+.|.++... ... .++. ..+..++.+.+++.++|+||+
T Consensus 310 ~l~Gkrv~i~~~~~~~-----~~l~~~L~elGm~vv~~~~~~-~~~~~~~~~~~~v~~~D~~~le~~i~~~~pDllig-- 381 (458)
T 3pdi_B 310 MLSSARTAIAADPDLL-----LGFDALLRSMGAHTVAAVVPA-RAAALVDSPLPSVRVGDLEDLEHAARAGQAQLVIG-- 381 (458)
T ss_dssp HHTTCEEEEECCHHHH-----HHHHHHHHTTTCEEEEEEESS-CCSCCTTTTSSCEEESHHHHHHHHHHHHTCSEEEE--
T ss_pred hcCCCEEEEECCcHHH-----HHHHHHHHHCCCEEEEEEECC-CChhhhhCccCcEEeCCHHHHHHHHHhcCCCEEEE--
Confidence 3555899998886421 23555666778876632 211 1111 135566777788889999985
Q ss_pred CchhhhHHHHHHhHhc
Q psy2427 116 GGSVIDTCKAANLYYC 131 (660)
Q Consensus 116 GGsviD~AK~~a~~~~ 131 (660)
+.. .|.+|..++
T Consensus 382 ~~~----~~~~a~k~g 393 (458)
T 3pdi_B 382 NSH----ALASARRLG 393 (458)
T ss_dssp CTT----HHHHHHHTT
T ss_pred Chh----HHHHHHHcC
Confidence 322 577776664
No 253
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=37.45 E-value=1.8e+02 Score=24.24 Aligned_cols=65 Identities=17% Similarity=0.182 Sum_probs=42.9
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh-cCCCEEEE---e-cCchhhhHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS-VQCDAFIA---V-GGGSVIDTCKA 125 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~D~IIa---v-GGGsviD~AK~ 125 (660)
.|++||-|.... .+.+...|++.|+.+..+. +..++.+.+++ ..+|+||- + +|...+++.+.
T Consensus 6 ~~ilivdd~~~~----~~~l~~~L~~~g~~v~~~~---------~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~ 72 (140)
T 3h5i_A 6 KKILIVEDSKFQ----AKTIANILNKYGYTVEIAL---------TGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALA 72 (140)
T ss_dssp CEEEEECSCHHH----HHHHHHHHHHTTCEEEEES---------SHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHH
T ss_pred cEEEEEeCCHHH----HHHHHHHHHHcCCEEEEec---------ChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHH
Confidence 588888776542 2567778888888766543 23445566665 68897775 2 35777888877
Q ss_pred HHh
Q psy2427 126 ANL 128 (660)
Q Consensus 126 ~a~ 128 (660)
+..
T Consensus 73 l~~ 75 (140)
T 3h5i_A 73 IQQ 75 (140)
T ss_dssp HHH
T ss_pred HHh
Confidence 743
No 254
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=37.40 E-value=1.4e+02 Score=24.94 Aligned_cols=65 Identities=20% Similarity=0.132 Sum_probs=40.2
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAA 126 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~ 126 (660)
.|++||-|.... .+.+...|++.|..+.+.. ..+..++.+.+++..+|+||. +.++..+++.+.+
T Consensus 6 ~~ILivdd~~~~----~~~l~~~L~~~~~~~~v~~-------~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l 73 (144)
T 3kht_A 6 KRVLVVEDNPDD----IALIRRVLDRKDIHCQLEF-------VDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAV 73 (144)
T ss_dssp EEEEEECCCHHH----HHHHHHHHHHTTCCEEEEE-------ESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHH
T ss_pred CEEEEEeCCHHH----HHHHHHHHHhcCCCeeEEE-------ECCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 577888765532 2567778888887733221 112455667777788998876 3455555555554
No 255
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=37.38 E-value=48 Score=35.80 Aligned_cols=52 Identities=13% Similarity=0.124 Sum_probs=41.1
Q ss_pred HHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCC
Q psy2427 96 FLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSG 166 (660)
Q Consensus 96 v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~g 166 (660)
.+++++.+++.++|.+|.|||--.++.|..++....+- + -.+|+|.||-|.-
T Consensus 178 ~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~------------g-------~~i~vVGIPkTID 229 (487)
T 2hig_A 178 PKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRR------------G-------VDISVFGVPKTID 229 (487)
T ss_dssp HHHHHHHHHHHTCSEEEEEECHHHHHHHHHHHHHHHHH------------T-------CCCEEEEEECCTT
T ss_pred HHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHh------------C-------CCceEEecccccc
Confidence 46899999999999999999999999988877543210 0 0189999999973
No 256
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=37.37 E-value=1.4e+02 Score=25.36 Aligned_cols=65 Identities=15% Similarity=0.026 Sum_probs=41.5
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCC--eEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGV--KFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKA 125 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi--~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~ 125 (660)
.|++||.|.... .+.+...|++.+- .+..+. +..++.+.+++..+|+||- +.+...+++.+.
T Consensus 21 ~~iLivdd~~~~----~~~l~~~L~~~~~~~~v~~~~---------~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~ 87 (150)
T 4e7p_A 21 MKVLVAEDQSML----RDAMCQLLTLQPDVESVLQAK---------NGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEW 87 (150)
T ss_dssp EEEEEECSCHHH----HHHHHHHHHTSTTEEEEEEES---------SHHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHH
T ss_pred cEEEEEcCCHHH----HHHHHHHHHhCCCcEEEEEEC---------CHHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHH
Confidence 478888776532 2567777877663 333332 3356667777888998875 466777777776
Q ss_pred HHh
Q psy2427 126 ANL 128 (660)
Q Consensus 126 ~a~ 128 (660)
+..
T Consensus 88 l~~ 90 (150)
T 4e7p_A 88 IRS 90 (150)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 257
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=37.20 E-value=59 Score=29.68 Aligned_cols=57 Identities=19% Similarity=0.123 Sum_probs=39.4
Q ss_pred HHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhH-hcCCCEEEEecCchhh--hHHHHH
Q psy2427 68 KATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVR-SVQCDAFIAVGGGSVI--DTCKAA 126 (660)
Q Consensus 68 ~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~-~~~~D~IIavGGGsvi--D~AK~~ 126 (660)
.-+.+.|++.|+++..+.-++. +.+.+.+++..+. ..++|+||.-||-++. |..+-+
T Consensus 43 ~~L~~~L~~~G~~v~~~~iV~D--d~~~i~~al~~~~a~~~~DlVittGG~g~~~~D~t~ea 102 (178)
T 3iwt_A 43 DIIKQLLIENGHKIIGYSLVPD--DKIKILKAFTDALSIDEVDVIISTGGTGYSPTDITVET 102 (178)
T ss_dssp HHHHHHHHHTTCEEEEEEEECS--CHHHHHHHHHHHHTCTTCCEEEEESCCSSSTTCCHHHH
T ss_pred HHHHHHHHHCCCEEEEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEecCCcccCCCCchHHH
Confidence 4578889999999876544332 2456666666544 4579999999998877 455543
No 258
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=36.99 E-value=49 Score=30.14 Aligned_cols=60 Identities=18% Similarity=0.178 Sum_probs=42.3
Q ss_pred HHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh-cCCCEEEEecCchhh--hHHHHHHhH
Q psy2427 68 KATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS-VQCDAFIAVGGGSVI--DTCKAANLY 129 (660)
Q Consensus 68 ~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~D~IIavGGGsvi--D~AK~~a~~ 129 (660)
.-+.+.|++.|+++..+.-+.. +.+.+.+.++.+.+ .++|+||--||=++. |..+-+...
T Consensus 34 ~~l~~~L~~~G~~v~~~~iv~D--d~~~i~~~l~~~~~~~~~DlVittGG~g~g~~D~t~ea~~~ 96 (169)
T 1y5e_A 34 QLLHELLKEAGHKVTSYEIVKD--DKESIQQAVLAGYHKEDVDVVLTNGGTGITKRDVTIEAVSA 96 (169)
T ss_dssp HHHHHHHHHHTCEEEEEEEECS--SHHHHHHHHHHHHTCTTCSEEEEECCCSSSTTCCHHHHHHT
T ss_pred HHHHHHHHHCCCeEeEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEEcCCCCCCCCCCcHHHHHH
Confidence 4577788888998765543332 35677777777665 479999999998776 777755443
No 259
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=36.91 E-value=1e+02 Score=29.96 Aligned_cols=88 Identities=13% Similarity=0.044 Sum_probs=50.8
Q ss_pred HHHHHHHHh-cCCC-EEEEEECccccc--cchHHHHHHHHHhCCCeEEEEeCc-ccCCCHHHHHHHHHHhHhc--CCCEE
Q psy2427 39 REVGMDMVN-MKAQ-RVCVMTDPHLSK--LAPVKATLDSLTRHGVKFELFDKV-RVEPTGDSFLEATKFVRSV--QCDAF 111 (660)
Q Consensus 39 ~~l~~~l~~-~g~~-r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~~~~~~-~~~p~~~~v~~~~~~~~~~--~~D~I 111 (660)
..+.++|.+ +|.+ |+.++++..-.. ....+-+++.|++.+..+.+.... ....+.+...+.++.+... ++|+|
T Consensus 114 ~~a~~~l~~~~g~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 193 (303)
T 3d02_A 114 AEYVEHMAKRMGGKGGYVIYVGSLTVPQHNLWADLLVKYQKEHYPDMHEVTRRMPVAESVDDSRRTTLDLMKTYPDLKAV 193 (303)
T ss_dssp HHHHHHHHHHTTTCEEEEEECSCSSCHHHHHHHHHHHHHHHHHCTTEEESSSCBSCTTCHHHHHHHHHHHHHHCTTEEEE
T ss_pred HHHHHHHHHHhCcCceEEEEecCCCCccHHHHHHHHHHHHHhhCCCCEEEEeecCCCCCHHHHHHHHHHHHHhCCCCCEE
Confidence 346677777 7876 888888653211 112344667777655444433322 2244555555555544333 46899
Q ss_pred EEecCchhhhHHHHH
Q psy2427 112 IAVGGGSVIDTCKAA 126 (660)
Q Consensus 112 IavGGGsviD~AK~~ 126 (660)
++.....++-+.+++
T Consensus 194 ~~~~d~~a~g~~~al 208 (303)
T 3d02_A 194 VSFGSNGPIGAGRAV 208 (303)
T ss_dssp EESSTTHHHHHHHHH
T ss_pred EEeCCcchhHHHHHH
Confidence 998877766665554
No 260
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=36.90 E-value=1.6e+02 Score=29.23 Aligned_cols=64 Identities=9% Similarity=0.047 Sum_probs=39.5
Q ss_pred CEEEEEEC-ccccc----cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 51 QRVCVMTD-PHLSK----LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 51 ~r~liVtd-~~~~~----~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
.++-+|++ ..+.. ....+-+.+.+++.|+++.++.... . +...+.++.+.+.++|.||.+|...
T Consensus 5 ~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~g~~~~~~~~~~---~-~~~~~~l~~l~~~~~dgIi~~~~~~ 73 (318)
T 2fqx_A 5 FVVGMVTDSGDIDDKSFNQQVWEGISRFAQENNAKCKYVTAST---D-AEYVPSLSAFADENMGLVVACGSFL 73 (318)
T ss_dssp CEEEEEESSSCTTSSSHHHHHHHHHHHHHHHTTCEEEEEECCS---G-GGHHHHHHHHHHTTCSEEEEESTTT
T ss_pred cEEEEEEcCCCCCCccHHHHHHHHHHHHHHHhCCeEEEEeCCC---H-HHHHHHHHHHHHcCCCEEEECChhH
Confidence 46666664 22222 1233556677778899887665421 1 2234667777788999999998653
No 261
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=36.77 E-value=1.1e+02 Score=25.50 Aligned_cols=65 Identities=8% Similarity=-0.027 Sum_probs=43.0
Q ss_pred CEEEEEECccccccchHHHHHHHHHh-CCCeEEEEeCcccCCCHHHHHHHHHHhHh-cCCCEEEE---ec-CchhhhHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTR-HGVKFELFDKVRVEPTGDSFLEATKFVRS-VQCDAFIA---VG-GGSVIDTCK 124 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~-~gi~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~D~IIa---vG-GGsviD~AK 124 (660)
.|++||-|.... .+.+...|++ .|+++..+.. ..++.+.+++ ..+|+||- +. +..-+++.+
T Consensus 5 ~~ilivdd~~~~----~~~l~~~L~~~~~~~v~~~~~---------~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~ 71 (140)
T 3lua_A 5 GTVLLIDYFEYE----REKTKIIFDNIGEYDFIEVEN---------LKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLS 71 (140)
T ss_dssp CEEEEECSCHHH----HHHHHHHHHHHCCCEEEEECS---------HHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHH
T ss_pred CeEEEEeCCHHH----HHHHHHHHHhccCccEEEECC---------HHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHH
Confidence 588888776542 2557777877 7887765532 4566777777 88998875 33 556666666
Q ss_pred HHHh
Q psy2427 125 AANL 128 (660)
Q Consensus 125 ~~a~ 128 (660)
.+..
T Consensus 72 ~l~~ 75 (140)
T 3lua_A 72 AIRN 75 (140)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5543
No 262
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=36.62 E-value=1.8e+02 Score=28.98 Aligned_cols=62 Identities=10% Similarity=0.093 Sum_probs=39.0
Q ss_pred CEEEEEECcccc---ccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh--cCCCEEEEec
Q psy2427 51 QRVCVMTDPHLS---KLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS--VQCDAFIAVG 115 (660)
Q Consensus 51 ~r~liVtd~~~~---~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~IIavG 115 (660)
.++.+|...... -....+-+.+.+++.|+.+.++.. +.+.+.-.+.++.+.. .++|.||-++
T Consensus 4 ~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~~i~~~~~vDgiIi~~ 70 (350)
T 3h75_A 4 TSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYA---ERDPQNTLQQARELFQGRDKPDYLMLVN 70 (350)
T ss_dssp CEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHHHSSSCCSEEEEEC
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEEC---CCCHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 466666643211 112446677778888999887643 4455555555555555 6999999886
No 263
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=36.62 E-value=2.2e+02 Score=25.93 Aligned_cols=67 Identities=24% Similarity=0.316 Sum_probs=42.2
Q ss_pred CCEEEEEECccccccchHHHHHHHHHhCCC-eEEEEeCcccCCCHHHHHHHHHHhHh-------------cCCCEEEE--
Q psy2427 50 AQRVCVMTDPHLSKLAPVKATLDSLTRHGV-KFELFDKVRVEPTGDSFLEATKFVRS-------------VQCDAFIA-- 113 (660)
Q Consensus 50 ~~r~liVtd~~~~~~~~~~~i~~~L~~~gi-~~~~~~~~~~~p~~~~v~~~~~~~~~-------------~~~D~IIa-- 113 (660)
..|+|||-|.... .+.+...|++.|+ .+..+. +. .++.+.+++ ..+|+||.
T Consensus 61 ~~~ILiVdDd~~~----~~~l~~~L~~~g~~~v~~a~------~~---~eal~~l~~~~~~~~~~~~~~~~~~dlillD~ 127 (206)
T 3mm4_A 61 GKRVLVVDDNFIS----RKVATGKLKKMGVSEVEQCD------SG---KEALRLVTEGLTQREEQGSVDKLPFDYIFMDC 127 (206)
T ss_dssp TCEEEEECSCHHH----HHHHHHHHHHTTCSEEEEES------SH---HHHHHHHHHHHHHHHHHTCSSCCSCSEEEEES
T ss_pred CCEEEEEeCCHHH----HHHHHHHHHHcCCCeeeeeC------CH---HHHHHHHHhhcccccccccccCCCCCEEEEcC
Confidence 3588888776542 2557778888887 555543 22 333444443 37898875
Q ss_pred -ecCchhhhHHHHHHhH
Q psy2427 114 -VGGGSVIDTCKAANLY 129 (660)
Q Consensus 114 -vGGGsviD~AK~~a~~ 129 (660)
+.+..-+++.+.+...
T Consensus 128 ~lp~~~G~el~~~lr~~ 144 (206)
T 3mm4_A 128 QMPEMDGYEATREIRKV 144 (206)
T ss_dssp CCSSSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhh
Confidence 5677778888777543
No 264
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=36.14 E-value=19 Score=36.15 Aligned_cols=87 Identities=10% Similarity=0.132 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCCCEEEEEECccccc--cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh-cCCCEEEEec
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS-VQCDAFIAVG 115 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~D~IIavG 115 (660)
..+.++|.+.|.+|+.+|+++.-.. ....+-+.+.|++.|+.+..+ -...+.+.+...++++.+.+ .++|+|++..
T Consensus 161 ~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~~ai~~~~ 239 (330)
T 3ctp_A 161 RMAFDHLYEKGCRKILHIKGPEVFEATELRYKGFLDGARAKDLEIDFI-EFQHDFQVKMLEEDINSMKDIVNYDGIFVFN 239 (330)
T ss_dssp HHHHHHHHHTTCCSEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCEEE-ECSSSCCGGGGGCCCTTGGGGGGSSEEEESS
T ss_pred HHHHHHHHHCCCCeEEEEeCCccCccHHHHHHHHHHHHHHcCCCccee-EEcCCCCHHHHHHHHHHHhcCCCCcEEEECC
Confidence 3466778888999999999864211 122345677888888764311 11223333322223333322 4789999987
Q ss_pred CchhhhHHHHH
Q psy2427 116 GGSVIDTCKAA 126 (660)
Q Consensus 116 GGsviD~AK~~ 126 (660)
...++-+.+++
T Consensus 240 d~~A~g~~~al 250 (330)
T 3ctp_A 240 DIAAATVMRAL 250 (330)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66555444443
No 265
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=36.12 E-value=55 Score=33.55 Aligned_cols=68 Identities=9% Similarity=0.072 Sum_probs=49.0
Q ss_pred CEEEEEECcccc-c--cchHHHHHHHHHhCCCeEEEEeCcc------cCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 51 QRVCVMTDPHLS-K--LAPVKATLDSLTRHGVKFELFDKVR------VEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 51 ~r~liVtd~~~~-~--~~~~~~i~~~L~~~gi~~~~~~~~~------~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
.++-||+-.+-. . ...+++.++.|++.|+++.+...+. ...+.+.++++.+.+.+-.+|+|+++-||-
T Consensus 14 D~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rGG~ 90 (336)
T 3sr3_A 14 DTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIGGM 90 (336)
T ss_dssp CEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCCCS
T ss_pred CEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEccccc
Confidence 788888755422 1 1245777889999999987643322 344577888888888888899999999984
No 266
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=35.96 E-value=2.3e+02 Score=28.28 Aligned_cols=50 Identities=12% Similarity=0.075 Sum_probs=37.9
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
..+-+.+.+++.|+.+.++.. +.+.+.-.+..+.+...++|.||-++...
T Consensus 88 ~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdGiI~~~~~~ 137 (355)
T 3e3m_A 88 TAQSLTDVLEQGGLQLLLGYT---AYSPEREEQLVETMLRRRPEAMVLSYDGH 137 (355)
T ss_dssp HHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTCCSEEEEECSCC
T ss_pred HHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 456777888889999887643 34566667788888889999999887654
No 267
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=35.70 E-value=2.2e+02 Score=27.38 Aligned_cols=64 Identities=13% Similarity=0.048 Sum_probs=41.8
Q ss_pred CEEEEEECcc--ccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 51 QRVCVMTDPH--LSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 51 ~r~liVtd~~--~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
+++.+|.... -+-....+-+.+.+++.|+.+.++.. +.+.+.-.+..+.+...++|.||-++..
T Consensus 21 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgii~~~~~ 86 (293)
T 2iks_A 21 RSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACS---EDQPDNEMRCIEHLLQRQVDAIIVSTSL 86 (293)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred cEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcC---CCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4666665421 11112446677788888998876643 3355666667777888899999988754
No 268
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=35.37 E-value=1.1e+02 Score=29.40 Aligned_cols=78 Identities=14% Similarity=0.157 Sum_probs=42.9
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHH-hHhcCCCEEEEecCchhhhHHHHHHhH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKF-VRSVQCDAFIAVGGGSVIDTCKAANLY 129 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~-~~~~~~D~IIavGGGsviD~AK~~a~~ 129 (660)
+.++++..+.+.+. .+++.+.+.. ..++.++ +.++++....++. +...++|+||+=|| +|+++...
T Consensus 14 ~ii~i~~~~~L~~~--~~~i~~e~~~-~~~I~vi-----~~~le~av~~a~~~~~~~~~dVIISRGg-----ta~~Lr~~ 80 (225)
T 2pju_A 14 PVIWTVSVTRLFEL--FRDISLEFDH-LANITPI-----QLGFEKAVTYIRKKLANERCDAIIAAGS-----NGAYLKSR 80 (225)
T ss_dssp CEEEEECCHHHHHH--HHHHHTTTTT-TCEEEEE-----CCCHHHHHHHHHHHTTTSCCSEEEEEHH-----HHHHHHTT
T ss_pred CEEEEEchHHHHHH--HHHHHHhhCC-CceEEEe-----cCcHHHHHHHHHHHHhcCCCeEEEeCCh-----HHHHHHhh
Confidence 45555555555432 2333332211 1344444 3445554444444 34456999999887 45555432
Q ss_pred hcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC
Q psy2427 130 YCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS 165 (660)
Q Consensus 130 ~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~ 165 (660)
.. +|+|.||.|.
T Consensus 81 ~~------------------------iPVV~I~vs~ 92 (225)
T 2pju_A 81 LS------------------------VPVILIKPSG 92 (225)
T ss_dssp CS------------------------SCEEEECCCH
T ss_pred CC------------------------CCEEEecCCH
Confidence 21 8999999985
No 269
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=35.32 E-value=1.3e+02 Score=27.56 Aligned_cols=63 Identities=22% Similarity=0.216 Sum_probs=42.2
Q ss_pred EEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccC-CC-HHHHHHHHHHhHhcCCCEEEEecC
Q psy2427 52 RVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVE-PT-GDSFLEATKFVRSVQCDAFIAVGG 116 (660)
Q Consensus 52 r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~-p~-~~~v~~~~~~~~~~~~D~IIavGG 116 (660)
|+.|-+|..-.+ +-+.|++.|++.|.++.-|.-...+ .+ .+....+++.+.+..+|.-|.|.|
T Consensus 22 kIaIgsDhaG~~--lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCG 86 (169)
T 3ph3_A 22 KIGIGSDHGGYN--LKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDRGIVICG 86 (169)
T ss_dssp EEEEEECGGGHH--HHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEES
T ss_pred EEEEEeCchHHH--HHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 677888876544 3478999999999998866433222 23 445566677777778886555544
No 270
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=35.09 E-value=48 Score=32.14 Aligned_cols=88 Identities=16% Similarity=0.025 Sum_probs=50.8
Q ss_pred HHHHHHHHh--cCCCEEEEEECcccccc--chHHHHHHHHHhC-CCeEEEEe-CcccCCCHHHHHHHHHHhHh-c----C
Q psy2427 39 REVGMDMVN--MKAQRVCVMTDPHLSKL--APVKATLDSLTRH-GVKFELFD-KVRVEPTGDSFLEATKFVRS-V----Q 107 (660)
Q Consensus 39 ~~l~~~l~~--~g~~r~liVtd~~~~~~--~~~~~i~~~L~~~-gi~~~~~~-~~~~~p~~~~v~~~~~~~~~-~----~ 107 (660)
..+.++|.+ .|.+|+.++++..-... ...+-+.+.+++. |+++..-. ......+.+...+.++.+.+ . +
T Consensus 112 ~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 191 (291)
T 3l49_A 112 AELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPNEGD 191 (291)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCSTTS
T ss_pred HHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHhCCCcCC
Confidence 446777877 88899999986532211 1234467778777 45432100 11122345555555554433 3 6
Q ss_pred CCEEEEecCchhhhHHHHH
Q psy2427 108 CDAFIAVGGGSVIDTCKAA 126 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~ 126 (660)
+|+|++.....++-+.+++
T Consensus 192 ~~ai~~~~d~~a~g~~~al 210 (291)
T 3l49_A 192 VGAIWACWDVPMIGATQAL 210 (291)
T ss_dssp CCEEEESSHHHHHHHHHHH
T ss_pred cCEEEECCCchHHHHHHHH
Confidence 8999998777766665554
No 271
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=34.96 E-value=1.8e+02 Score=23.61 Aligned_cols=65 Identities=14% Similarity=0.098 Sum_probs=41.0
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc-CCCEEEE---ecC-chhhhHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV-QCDAFIA---VGG-GSVIDTCKA 125 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~-~~D~IIa---vGG-GsviD~AK~ 125 (660)
.|++||.+.... .+.+...|+..|+.+..+. +..++.+.+++. .+|+||- +.+ ...+++.+.
T Consensus 6 ~~ilivdd~~~~----~~~l~~~L~~~g~~v~~~~---------~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~ 72 (132)
T 2rdm_A 6 VTILLADDEAIL----LLDFESTLTDAGFLVTAVS---------SGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARV 72 (132)
T ss_dssp CEEEEECSSHHH----HHHHHHHHHHTTCEEEEES---------SHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHH
T ss_pred ceEEEEcCcHHH----HHHHHHHHHHcCCEEEEEC---------CHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHH
Confidence 578888766532 2557777777788765442 234555666666 7897764 343 566777776
Q ss_pred HHh
Q psy2427 126 ANL 128 (660)
Q Consensus 126 ~a~ 128 (660)
+..
T Consensus 73 l~~ 75 (132)
T 2rdm_A 73 ARE 75 (132)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 272
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=34.89 E-value=95 Score=26.50 Aligned_cols=67 Identities=16% Similarity=0.095 Sum_probs=41.4
Q ss_pred CCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHH
Q psy2427 50 AQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAA 126 (660)
Q Consensus 50 ~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~ 126 (660)
..|++||-|.... .+.+...|++.|....+.. -. +..++.+.+++..+|+||- +.+...+++.+.+
T Consensus 15 ~~~iLivdd~~~~----~~~l~~~L~~~~~~~~v~~----~~---~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l 83 (152)
T 3eul_A 15 KVRVVVGDDHPLF----REGVVRALSLSGSVNVVGE----AD---DGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAV 83 (152)
T ss_dssp CEEEEEECSSHHH----HHHHHHHHHHHSSEEEEEE----ES---SHHHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHH
T ss_pred eEEEEEEcCCHHH----HHHHHHHHhhCCCeEEEEE----eC---CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 3688888776542 2556777777664322211 11 2345666677778998876 5677777777766
Q ss_pred H
Q psy2427 127 N 127 (660)
Q Consensus 127 a 127 (660)
.
T Consensus 84 ~ 84 (152)
T 3eul_A 84 R 84 (152)
T ss_dssp H
T ss_pred H
Confidence 4
No 273
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=34.88 E-value=1e+02 Score=31.86 Aligned_cols=89 Identities=8% Similarity=0.029 Sum_probs=55.7
Q ss_pred HHHHHHHHhcCCCEEEEEECccccc----cchHHHHHHHHHhCCCeEEEEeCc-ccCCCHHHHHHHH-HHhHh-cCCCEE
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSK----LAPVKATLDSLTRHGVKFELFDKV-RVEPTGDSFLEAT-KFVRS-VQCDAF 111 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~----~~~~~~i~~~L~~~gi~~~~~~~~-~~~p~~~~v~~~~-~~~~~-~~~D~I 111 (660)
..+.++|.+.|.+|+.+|+++.... ....+-+.+.|++.|+...++... ....+.+...+.+ +.+.. .++|+|
T Consensus 128 ~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~aI 207 (412)
T 4fe7_A 128 ESAFLHLKEKGVNRFAFYGLPESSGKRWATEREYAFRQLVAEEKYRGVVYQGLETAPENWQHAQNRLADWLQTLPPQTGI 207 (412)
T ss_dssp HHHHHHHHHTTCCEEEEECCCTTSCCHHHHHHHHHHHHHHTTSSSCCEEECCSCSSCSSHHHHHHHHHHHHHHSCTTEEE
T ss_pred HHHHHHHHHcCCceEEEecccccccccHHHHHHHHHHHHHHHcCCCccccccccccccchhhHHHHHHHHHHhCCCCeEE
Confidence 4467788888999999998764321 122345677888888775544332 2233444444433 33433 468999
Q ss_pred EEecCchhhhHHHHHH
Q psy2427 112 IAVGGGSVIDTCKAAN 127 (660)
Q Consensus 112 IavGGGsviD~AK~~a 127 (660)
++.....++-+.+++.
T Consensus 208 ~~~nD~~A~g~~~al~ 223 (412)
T 4fe7_A 208 IAVTDARARHILQVCE 223 (412)
T ss_dssp EESSHHHHHHHHHHHH
T ss_pred EEEecHHHHHHHHHHH
Confidence 9998777766666554
No 274
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=34.81 E-value=55 Score=33.42 Aligned_cols=86 Identities=15% Similarity=0.129 Sum_probs=51.4
Q ss_pred eEEECcChHHH-HHHHHHhcCCCEEEEEECccc-cccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 30 TIRIGPGVTRE-VGMDMVNMKAQRVCVMTDPHL-SKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 30 ~i~~G~g~~~~-l~~~l~~~g~~r~liVtd~~~-~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
-++||...+.. +-+.|.+.+.+-+.|||-+.- .+. +.+.+..++.|+.+...+..... .+...+..+.+++.+
T Consensus 25 Ivf~G~~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~~~---~~v~~~A~~~gIpv~~~~~~~~~--~~~~~~~~~~l~~~~ 99 (329)
T 2bw0_A 25 IAVIGQSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKA---DPLGLEAEKDGVPVFKYSRWRAK--GQALPDVVAKYQALG 99 (329)
T ss_dssp EEEECCHHHHHHHHHHHHHTTCEEEEEEECCCCSSCC---CHHHHHHHHHTCCEEECSCCEET--TEECHHHHHHHHTTC
T ss_pred EEEEcCcHHHHHHHHHHHHCCCeEEEEEeCCCcCCCC---CHHHHHHHHcCCCEEecCccccc--ccccHHHHHHHHhcC
Confidence 45678766653 445555556556677883321 111 23445556679998765543211 011235667788899
Q ss_pred CCEEEEecCchhh
Q psy2427 108 CDAFIAVGGGSVI 120 (660)
Q Consensus 108 ~D~IIavGGGsvi 120 (660)
+|+||.+|=|..+
T Consensus 100 ~Dliv~a~y~~il 112 (329)
T 2bw0_A 100 AELNVLPFCSQFI 112 (329)
T ss_dssp CSEEEESSCSSCC
T ss_pred CCEEEEeehhhhC
Confidence 9999999988654
No 275
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=34.58 E-value=1.3e+02 Score=27.60 Aligned_cols=72 Identities=14% Similarity=0.084 Sum_probs=50.8
Q ss_pred cChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEe
Q psy2427 35 PGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAV 114 (660)
Q Consensus 35 ~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIav 114 (660)
..-+..|.+.+...+ .+++|.+... . ..+.+.+.|...|+.+..+.+ .-+.+.-.++.+.+++.+.+++|+-
T Consensus 40 ~~K~~~L~~~l~~~~-~~~lVF~~~~-~---~~~~l~~~L~~~g~~~~~lhg---~~~~~~R~~~l~~F~~g~~~vLvaT 111 (191)
T 2p6n_A 40 EAKMVYLLECLQKTP-PPVLIFAEKK-A---DVDAIHEYLLLKGVEAVAIHG---GKDQEERTKAIEAFREGKKDVLVAT 111 (191)
T ss_dssp GGHHHHHHHHHTTSC-SCEEEECSCH-H---HHHHHHHHHHHHTCCEEEECT---TSCHHHHHHHHHHHHHTSCSEEEEC
T ss_pred HHHHHHHHHHHHhCC-CCEEEEECCH-H---HHHHHHHHHHHcCCcEEEEeC---CCCHHHHHHHHHHHhcCCCEEEEEc
Confidence 345566777777665 5676666543 2 236788888888888877654 5567777788888888888888875
No 276
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=34.56 E-value=1.9e+02 Score=23.79 Aligned_cols=64 Identities=11% Similarity=0.148 Sum_probs=40.5
Q ss_pred CEEEEEECccccccchHHHHHHHHHh-CCCe-EEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTR-HGVK-FELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKA 125 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~-~gi~-~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~ 125 (660)
.|++||.+.... ...+...|++ .|+. +..+.. ..++.+.+++..+|+||- +.+...+++.+.
T Consensus 9 ~~iLivdd~~~~----~~~l~~~L~~~~~~~~v~~~~~---------~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~ 75 (143)
T 3cnb_A 9 FSILIIEDDKEF----ADMLTQFLENLFPYAKIKIAYN---------PFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHR 75 (143)
T ss_dssp CEEEEECSCHHH----HHHHHHHHHHHCTTCEEEEECS---------HHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHH
T ss_pred ceEEEEECCHHH----HHHHHHHHHhccCccEEEEECC---------HHHHHHHHHhcCCCEEEEecccCCCcHHHHHHH
Confidence 578888765532 2567777877 7887 554432 345566667778998775 345555666665
Q ss_pred HH
Q psy2427 126 AN 127 (660)
Q Consensus 126 ~a 127 (660)
+.
T Consensus 76 l~ 77 (143)
T 3cnb_A 76 IK 77 (143)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 277
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=34.44 E-value=81 Score=32.32 Aligned_cols=64 Identities=8% Similarity=-0.018 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcc-----------------------cCCC---
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR-----------------------VEPT--- 92 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~-----------------------~~p~--- 92 (660)
..|...|.+.| ..+.|++. .. .+.++..|+.+..+.... +...
T Consensus 38 ~~La~~L~~~G-heV~v~~~-~~---------~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (398)
T 3oti_A 38 IQLAWGFRTAG-HDVLIAVA-EH---------ADRAAAAGLEVVDVAPDYSAVKVFEQVAKDNPRFAETVATRPAIDLEE 106 (398)
T ss_dssp HHHHHHHHHTT-CEEEEEES-SC---------HHHHHTTTCEEEESSTTCCHHHHHHHHHHHCHHHHHTGGGSCCCSGGG
T ss_pred HHHHHHHHHCC-CEEEEecc-ch---------HHHHHhCCCeeEecCCccCHHHHhhhcccCCccccccccCChhhhHHH
Confidence 34677788888 78888886 21 123445687766554210 0000
Q ss_pred ---------HHHHHHHHHHhHhcCCCEEEE
Q psy2427 93 ---------GDSFLEATKFVRSVQCDAFIA 113 (660)
Q Consensus 93 ---------~~~v~~~~~~~~~~~~D~IIa 113 (660)
...+.++.+.+++.++|+||.
T Consensus 107 ~~~~~~~~~~~~~~~l~~~l~~~~pDlVv~ 136 (398)
T 3oti_A 107 WGVQIAAVNRPLVDGTMALVDDYRPDLVVY 136 (398)
T ss_dssp GHHHHHHHHGGGHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 023456777888899999997
No 278
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=34.41 E-value=2.7e+02 Score=27.52 Aligned_cols=50 Identities=10% Similarity=0.050 Sum_probs=38.5
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
..+-+.+.+++.|+.+.++.. +.+.+.-.+..+.+...++|.||-++...
T Consensus 80 ~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdGiIi~~~~~ 129 (339)
T 3h5o_A 80 TLTGIETVLDAAGYQMLIGNS---HYDAGQELQLLRAYLQHRPDGVLITGLSH 129 (339)
T ss_dssp HHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred HHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHcCCCCEEEEeCCCC
Confidence 557788888899999887643 45566677888888889999999887543
No 279
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=34.37 E-value=1.1e+02 Score=30.06 Aligned_cols=49 Identities=10% Similarity=0.018 Sum_probs=35.0
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
..+-+.+.+++.|+++.++.. ..+.+...+.++.+.+.++|.||.+|.+
T Consensus 25 ~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~l~~l~~~~vdgIi~~~~~ 73 (296)
T 2hqb_A 25 AYEGLLNIHSNLDVDVVLEEG---VNSEQKAHRRIKELVDGGVNLIFGHGHA 73 (296)
T ss_dssp HHHHHHHHHHHSCCEEEEECC---CCSHHHHHHHHHHHHHTTCCEEEECSTH
T ss_pred HHHHHHHHHHHhCCeEEEEeC---CCCHHHHHHHHHHHHHCCCCEEEEcCHh
Confidence 446677788888988775532 3344555677888888899999998754
No 280
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=34.30 E-value=1.1e+02 Score=28.88 Aligned_cols=83 Identities=14% Similarity=0.142 Sum_probs=49.8
Q ss_pred EECcChHHH-HHHHHHh--cCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHH-HHHHHHhHhcC
Q psy2427 32 RIGPGVTRE-VGMDMVN--MKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSF-LEATKFVRSVQ 107 (660)
Q Consensus 32 ~~G~g~~~~-l~~~l~~--~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v-~~~~~~~~~~~ 107 (660)
+.|.|.--+ |-+.+.. ++.+-++|||++.-.. .++.-++.|+.+.+++. ...++.+.. .++.+.+++.+
T Consensus 14 ~SG~gsnl~all~~~~~~~l~~~I~~Visn~~~a~------~l~~A~~~gIp~~~~~~-~~~~~r~~~d~~~~~~l~~~~ 86 (209)
T 4ds3_A 14 ISGGGSNMEALIRAAQAPGFPAEIVAVFSDKAEAG------GLAKAEAAGIATQVFKR-KDFASKEAHEDAILAALDVLK 86 (209)
T ss_dssp ESSCCHHHHHHHHHHTSTTCSEEEEEEEESCTTCT------HHHHHHHTTCCEEECCG-GGSSSHHHHHHHHHHHHHHHC
T ss_pred EECCcHHHHHHHHHHHcCCCCcEEEEEEECCcccH------HHHHHHHcCCCEEEeCc-cccCCHHHHHHHHHHHHHhcC
Confidence 456665432 4444433 2234577888753211 12455667999886643 222343333 46778889999
Q ss_pred CCEEEEecCchhhh
Q psy2427 108 CDAFIAVGGGSVID 121 (660)
Q Consensus 108 ~D~IIavGGGsviD 121 (660)
+|+||.+|=|.++-
T Consensus 87 ~Dliv~agy~~il~ 100 (209)
T 4ds3_A 87 PDIICLAGYMRLLS 100 (209)
T ss_dssp CSEEEESSCCSCCC
T ss_pred CCEEEEeccccCcC
Confidence 99999999887753
No 281
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=34.28 E-value=95 Score=30.36 Aligned_cols=87 Identities=11% Similarity=0.032 Sum_probs=49.4
Q ss_pred HHHHHHHHhcC---CCEEEEEECccccc--cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHh-Hh----cCC
Q psy2427 39 REVGMDMVNMK---AQRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFV-RS----VQC 108 (660)
Q Consensus 39 ~~l~~~l~~~g---~~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~-~~----~~~ 108 (660)
..+.++|.+.| .+|+.+++++.-.. ....+-+++.|++.|. +.+......+-+.+...+.++.+ +. .++
T Consensus 114 ~~a~~~L~~~g~g~~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~-~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 192 (306)
T 2vk2_A 114 KLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN-IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNI 192 (306)
T ss_dssp HHHHHHHHHHHTTSCEEEEEEECSTTCHHHHHHHHHHHHHTTTCTT-EEEEEEEECTTCHHHHHHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHhcCCCCCeEEEEEcCCCChhHHHHHHHHHHHHhhCCC-eEEEEeccCCCcHHHHHHHHHHHHHhCCCCCCe
Confidence 34667777766 68999998763211 1123446677777775 22111122344555544444443 33 368
Q ss_pred CEEEEecCchhhhHHHHH
Q psy2427 109 DAFIAVGGGSVIDTCKAA 126 (660)
Q Consensus 109 D~IIavGGGsviD~AK~~ 126 (660)
|+|++.....++-+.+++
T Consensus 193 ~ai~~~nd~~A~g~~~al 210 (306)
T 2vk2_A 193 CMVYAHNDDMVIGAIQAI 210 (306)
T ss_dssp CEEEESSHHHHHHHHHHH
T ss_pred eEEEECCchHHHHHHHHH
Confidence 999998766665555544
No 282
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=34.18 E-value=56 Score=38.19 Aligned_cols=54 Identities=20% Similarity=0.185 Sum_probs=40.4
Q ss_pred HHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCC
Q psy2427 95 SFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSG 166 (660)
Q Consensus 95 ~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~g 166 (660)
...++++.++++++|.+|.|||--.++.|..++..... ...-.+|+|.||-|.-
T Consensus 650 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~------------------~~~~~i~vVGIPkTID 703 (941)
T 3opy_B 650 DIGMIAYFFEKYGFDGLILVGGFEAFISLHQLERARIN------------------YPSLRIPLVLIPATIS 703 (941)
T ss_dssp CHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHGGGT------------------CGGGCSCEEEEEBCSS
T ss_pred hHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHh------------------cCccCCcEEeeecccc
Confidence 56788999999999999999998788887776543210 0000189999999973
No 283
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=33.88 E-value=36 Score=28.51 Aligned_cols=34 Identities=9% Similarity=0.063 Sum_probs=28.6
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEE
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELF 84 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~ 84 (660)
+|++++|+.+...+-..+++.+.+++.|+++.+.
T Consensus 4 kkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~ 37 (106)
T 1e2b_A 4 KHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIE 37 (106)
T ss_dssp EEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEE
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEE
Confidence 5899999998766656799999999999987754
No 284
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=33.82 E-value=58 Score=33.49 Aligned_cols=74 Identities=12% Similarity=0.103 Sum_probs=53.2
Q ss_pred ChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEec
Q psy2427 36 GVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVG 115 (660)
Q Consensus 36 g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavG 115 (660)
++.+++.+.+++.+.++++|-||..- ..+++++.|++.++.+..++ |+ ..+++++--.++|..||=+
T Consensus 266 ~I~rqIk~~vk~~~lksVFIATDa~~----~~~ELk~~L~~~~v~vv~~~-----pe----~a~ID~~I~~~A~~FIGN~ 332 (362)
T 3zy2_A 266 QILEQIVEKVGSIGAKSVFVASDKDH----MIDEINEALKPYEIEAHRQE-----PD----DMYTSLAIMGRADLFVGNC 332 (362)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEESSCC----CHHHHHHHHGGGTCCEECCS-----SC----CHHHHHHHHHHSSEEEECT
T ss_pred HHHHHHHHHHHhcCCcEEEEecCCHH----HHHHHHHHhhccCceEEEeC-----Cc----hhHHHHHHHHhCCEeecCc
Confidence 45567777777789999999999653 35889999987777765432 33 4456666666789999888
Q ss_pred CchhhhH
Q psy2427 116 GGSVIDT 122 (660)
Q Consensus 116 GGsviD~ 122 (660)
..|-.--
T Consensus 333 ~SSFSa~ 339 (362)
T 3zy2_A 333 VSTFSHI 339 (362)
T ss_dssp TCHHHHH
T ss_pred cccccHH
Confidence 8776433
No 285
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=33.81 E-value=2.7e+02 Score=27.42 Aligned_cols=49 Identities=12% Similarity=0.058 Sum_probs=36.0
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
..+-+.+.+++.|+.+.++.. +.+.+.-.+..+.+...++|.||-++..
T Consensus 81 ~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 129 (332)
T 2o20_A 81 ITRGVDDIASMYKYNMILANS---DNDVEKEEKVLETFLSKQVDGIVYMGSS 129 (332)
T ss_dssp HHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECSSC
T ss_pred HHHHHHHHHHHcCCEEEEEEC---CCChHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 446677788888998877643 3455666677777888899999988753
No 286
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=33.81 E-value=64 Score=29.24 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=39.4
Q ss_pred HHHHHHHhC-----CCeEEEEeCcccCCCHHHHHHHHHHhHh-cCCCEEEEecCchhh--hHHHHHHh
Q psy2427 69 ATLDSLTRH-----GVKFELFDKVRVEPTGDSFLEATKFVRS-VQCDAFIAVGGGSVI--DTCKAANL 128 (660)
Q Consensus 69 ~i~~~L~~~-----gi~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~D~IIavGGGsvi--D~AK~~a~ 128 (660)
.+.+.|++. |+++..+.-+. =+.+.+.+.++.+.+ .++|+||--||=|+. |..+-+-.
T Consensus 29 ~l~~~l~~~~~~~~G~~v~~~~iv~--Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~~D~t~~a~~ 94 (167)
T 1uuy_A 29 RAVSVVDSSSEKLGGAKVVATAVVP--DEVERIKDILQKWSDVDEMDLILTLGGTGFTPRDVTPEATK 94 (167)
T ss_dssp HHHHHHHHTTTTTTSEEEEEEEEEC--SCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCCHHHHHH
T ss_pred HHHHHHHhccccCCCcEEeEEEEcC--CCHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCCchHHHHH
Confidence 455666666 87766544332 236777777777765 589999999998876 77665443
No 287
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=33.73 E-value=46 Score=30.22 Aligned_cols=59 Identities=15% Similarity=0.031 Sum_probs=39.0
Q ss_pred HHHHHH----HHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhh--hHHHHHHh
Q psy2427 68 KATLDS----LTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVI--DTCKAANL 128 (660)
Q Consensus 68 ~~i~~~----L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsvi--D~AK~~a~ 128 (660)
.-+.+. |++.|+++..+.-++. +.+.+.+.++.+.+.++|+||--||=++. |..+-+-.
T Consensus 28 ~~l~~~~~~~l~~~G~~v~~~~iv~D--d~~~I~~~l~~a~~~~~DlVittGG~g~~~~D~t~ea~~ 92 (167)
T 2g2c_A 28 PLLQRLMSDELQDYSYELISEVVVPE--GYDTVVEAIATALKQGARFIITAGGTGIRAKNQTPEATA 92 (167)
T ss_dssp HHHHHHHCC----CEEEEEEEEEECS--SHHHHHHHHHHHHHTTCSEEEEESCCSSSTTCCHHHHHH
T ss_pred HHHHHhHHhHHHHCCCEEeEEEEeCC--CHHHHHHHHHHHHhCCCCEEEECCCCCCCCCcChHHHHH
Confidence 456677 8888887664443322 36777777777776569999999998876 77765443
No 288
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=33.67 E-value=2.1e+02 Score=23.79 Aligned_cols=64 Identities=16% Similarity=0.207 Sum_probs=40.3
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
.+++||-|.... ...+...|+..|+.+..+. +..++.+.++...+|+||- +.+..-+++.+.+.
T Consensus 5 ~~Ilivdd~~~~----~~~l~~~L~~~g~~v~~~~---------~~~~al~~~~~~~~dlvllD~~l~~~~g~~l~~~l~ 71 (136)
T 2qzj_A 5 TKILIIDGDKDN----CQKLKGFLEEKGISIDLAY---------NCEEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIR 71 (136)
T ss_dssp CEEEEECSCHHH----HHHHHHHHHTTTCEEEEES---------SHHHHHHHHHHCCCSEEEEESEETTEEHHHHHHHHH
T ss_pred CeEEEEcCCHHH----HHHHHHHHHHCCCEEEEEC---------CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHc
Confidence 477887776532 2567777877787765432 2345556666778998774 45666667666553
No 289
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=33.59 E-value=1.3e+02 Score=28.97 Aligned_cols=86 Identities=12% Similarity=0.049 Sum_probs=49.0
Q ss_pred HHHHHHHHhc------CCCE--EEEEECcccc--ccchHHHHHHHHHhC-CCeEEEEeCcccCCCHHHHHHHHHHh-Hh-
Q psy2427 39 REVGMDMVNM------KAQR--VCVMTDPHLS--KLAPVKATLDSLTRH-GVKFELFDKVRVEPTGDSFLEATKFV-RS- 105 (660)
Q Consensus 39 ~~l~~~l~~~------g~~r--~liVtd~~~~--~~~~~~~i~~~L~~~-gi~~~~~~~~~~~p~~~~v~~~~~~~-~~- 105 (660)
..+.++|.+. |.+| ++++++..-. .....+-+.+.+++. |+++... ...+.+.+...+.++.+ ..
T Consensus 112 ~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~--~~~~~~~~~~~~~~~~ll~~~ 189 (290)
T 2fn9_A 112 VLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTWDRSNGFHSVVDQYPEFKMVAQ--QSAEFDRDTAYKVTEQILQAH 189 (290)
T ss_dssp HHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHHHHHHHHHHHHHHTTSTTEEEEEE--EECTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccCCcccceeEEEEEcCCCCchHHHHHHHHHHHHHhCCCCEEEEe--ccCCCCHHHHHHHHHHHHHhC
Confidence 4466777776 7888 7778865321 111234466778877 7765321 12234455544444443 33
Q ss_pred cCCCEEEEecCchhhhHHHHH
Q psy2427 106 VQCDAFIAVGGGSVIDTCKAA 126 (660)
Q Consensus 106 ~~~D~IIavGGGsviD~AK~~ 126 (660)
.++|+|++.....++-+.+++
T Consensus 190 ~~~~ai~~~~d~~a~g~~~al 210 (290)
T 2fn9_A 190 PEIKAIWCGNDAMALGAMKAC 210 (290)
T ss_dssp TTCCEEEESSHHHHHHHHHHH
T ss_pred CCCcEEEECCchHHHHHHHHH
Confidence 368999998766555444443
No 290
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=33.15 E-value=1.5e+02 Score=26.50 Aligned_cols=63 Identities=22% Similarity=0.216 Sum_probs=40.7
Q ss_pred EEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccC-CC-HHHHHHHHHHhHhcCCCEEEEecC
Q psy2427 52 RVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVE-PT-GDSFLEATKFVRSVQCDAFIAVGG 116 (660)
Q Consensus 52 r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~-p~-~~~v~~~~~~~~~~~~D~IIavGG 116 (660)
|+.|=+|..-.+ +-+.+.+.|++.|.++.-|.-...+ .+ .+....+++.+.+..+|.-|.|.|
T Consensus 2 kI~igsDhaG~~--lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCG 66 (149)
T 3he8_A 2 KIGIGSDHGGYN--LKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDRGIVICG 66 (149)
T ss_dssp EEEEEECGGGHH--HHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEES
T ss_pred EEEEEECchhHH--HHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 456666765443 3478999999999998766433222 23 445566677777778885554443
No 291
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=32.99 E-value=2e+02 Score=28.24 Aligned_cols=64 Identities=14% Similarity=0.067 Sum_probs=39.5
Q ss_pred CEEEEEECc-cccccchHHHHHHHHHhC-CCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 51 QRVCVMTDP-HLSKLAPVKATLDSLTRH-GVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 51 ~r~liVtd~-~~~~~~~~~~i~~~L~~~-gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
.++.++... +.+-....+-+.+.+++. |+.+.+++. +.+.+.-.+.++.+...++|.||..+..
T Consensus 7 ~~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~~l~i~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 72 (325)
T 2x7x_A 7 FRIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRSA---GDDNSKQAEDVHYFMDEGVDLLIISANE 72 (325)
T ss_dssp CEEEEEESCCSHHHHHHHHHHHHHHTTSSSCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred eEEEEEecCCCHHHHHHHHHHHHHHHHcCCcEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 355555543 111112345566777777 898877643 3445555666777777899999988654
No 292
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=32.97 E-value=2.2e+02 Score=26.71 Aligned_cols=49 Identities=16% Similarity=0.206 Sum_probs=38.5
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
..+-+.+.+++.|+.+.++.. +.+.+.-.+..+.+...++|.||-.+..
T Consensus 20 ~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 68 (272)
T 3o74_A 20 IAKQLEQGARARGYQLLIASS---DDQPDSERQLQQLFRARRCDALFVASCL 68 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred HHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 457778888889999887653 4466777788888888999999988765
No 293
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=32.97 E-value=71 Score=30.82 Aligned_cols=83 Identities=18% Similarity=0.086 Sum_probs=49.6
Q ss_pred HHHHHHHHhcCCCEEEEEECccccc--cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh-cCCCEEEEec
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS-VQCDAFIAVG 115 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~D~IIavG 115 (660)
..+.++|. .|.+|+.+++++.-.. ....+-+.+.|++.|+.+... -...+.+.+. +.+.++. .++|+|++..
T Consensus 112 ~~a~~~L~-~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~-~~~~~~~~~~---~~~~l~~~~~~~ai~~~~ 186 (277)
T 3hs3_A 112 KESIKLLS-KKIEKVLIQHWPLSLPTIRERIEAMTAEASKLKIDYLLE-ETPENNPYIS---AQSALNKSNQFDAIITVN 186 (277)
T ss_dssp HHHHHTSC-TTCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE-ECCSSCHHHH---HHHHHHTGGGCSEEECSS
T ss_pred HHHHHHHH-hCCCEEEEEeCCCcCccHHHHHHHHHHHHHHCCCCCCCC-CccCCchHHH---HHHHHcCCCCCCEEEECC
Confidence 34566777 8999999998864221 122345777888899876542 1222222233 3333332 5789999987
Q ss_pred CchhhhHHHHH
Q psy2427 116 GGSVIDTCKAA 126 (660)
Q Consensus 116 GGsviD~AK~~ 126 (660)
...++-+.+++
T Consensus 187 d~~A~g~~~al 197 (277)
T 3hs3_A 187 DLYAAEIIKEA 197 (277)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 76665555544
No 294
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=32.96 E-value=1.3e+02 Score=30.14 Aligned_cols=77 Identities=13% Similarity=0.161 Sum_probs=53.1
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHh
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYY 130 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~ 130 (660)
+|+.+|+-...... -..++.+.|++...++.+++.+ -+.|.+.=+.+.+.+. ++|++|-|||-..-.+-|+.-...
T Consensus 157 ~kv~~vsQTT~s~~-~~~~iv~~L~~r~p~~~~~~tI-C~AT~~RQ~av~~la~--~~D~miVVGg~nSSNT~rL~eia~ 232 (297)
T 3dnf_A 157 ERVGIVAQTTQNEE-FFKEVVGEIALWVKEVKVINTI-CNATSLRQESVKKLAP--EVDVMIIIGGKNSGNTRRLYYISK 232 (297)
T ss_dssp SEEEEEECTTCCHH-HHHHHHHHHHHHSSEEEEECCC-CSHHHHHHHHHHHHGG--GSSEEEEESCTTCHHHHHHHHHHH
T ss_pred CcEEEEEecCCcHH-HHHHHHHHHHHhCCCCCCCCCc-cHHHHHHHHHHHHHHh--hCCEEEEECCCCCchhHHHHHHHH
Confidence 67777776654333 4478888888776666665543 3445555555555555 589999999999999999876655
Q ss_pred c
Q psy2427 131 C 131 (660)
Q Consensus 131 ~ 131 (660)
.
T Consensus 233 ~ 233 (297)
T 3dnf_A 233 E 233 (297)
T ss_dssp H
T ss_pred h
Confidence 4
No 295
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=32.91 E-value=2e+02 Score=24.34 Aligned_cols=65 Identities=15% Similarity=0.158 Sum_probs=40.9
Q ss_pred CEEEEEECccccccchHHHHHHHHHh-CCCeEE-EEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTR-HGVKFE-LFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKA 125 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~-~gi~~~-~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~ 125 (660)
.|++||.+.... .+.+...|++ .|+.+. .+. +..++.+.+++..+|+||- +++...+++.+.
T Consensus 6 ~~ILivdd~~~~----~~~l~~~L~~~~~~~v~~~~~---------~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~ 72 (153)
T 3cz5_A 6 ARIMLVDDHPIV----REGYRRLIERRPGYAVVAEAA---------DAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRH 72 (153)
T ss_dssp EEEEEECSCHHH----HHHHHHHHTTSTTEEEEEEES---------SHHHHHHHHHTTCCSEEEECSCCSSSCHHHHHHH
T ss_pred cEEEEECCcHHH----HHHHHHHHhhCCCcEEEEEeC---------CHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHH
Confidence 578888776532 2567777876 566654 222 2345666777778998875 456666677666
Q ss_pred HHh
Q psy2427 126 ANL 128 (660)
Q Consensus 126 ~a~ 128 (660)
+..
T Consensus 73 l~~ 75 (153)
T 3cz5_A 73 IRQ 75 (153)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
No 296
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=32.87 E-value=84 Score=30.27 Aligned_cols=86 Identities=14% Similarity=0.121 Sum_probs=50.2
Q ss_pred HHHHHHHHhc-C-CCEEEEEECccccc--cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc--CCCEEE
Q psy2427 39 REVGMDMVNM-K-AQRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV--QCDAFI 112 (660)
Q Consensus 39 ~~l~~~l~~~-g-~~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~D~II 112 (660)
..+.++|.+. | .+|+.++++..-.. ....+-+.+.+++.|..+.. ....+.+.+...+.++.+... ++|+|+
T Consensus 118 ~~~~~~L~~~~G~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~ 195 (289)
T 3brs_A 118 IRIGAVTKNLVRKSGKIGVISFVKNSKTAMDREEGLKIGLSDDSNKIEA--IYYCDSNYDKAYDGTVELLTKYPDISVMV 195 (289)
T ss_dssp HHHHHHHHHHTSSSCEEEEEESCTTSHHHHHHHHHHHHHHGGGGGGEEE--EEECTTCHHHHHHHHHHHHHHCTTEEEEE
T ss_pred HHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEe--eecCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 3466777775 6 89999998763211 11234466778777765321 122344556555555544332 478999
Q ss_pred EecCchhhhHHHHH
Q psy2427 113 AVGGGSVIDTCKAA 126 (660)
Q Consensus 113 avGGGsviD~AK~~ 126 (660)
+.....++-+.+++
T Consensus 196 ~~~d~~a~g~~~al 209 (289)
T 3brs_A 196 GLNQYSATGAARAI 209 (289)
T ss_dssp ESSHHHHHHHHHHH
T ss_pred ECCCcchHHHHHHH
Confidence 98766655554443
No 297
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=32.58 E-value=60 Score=33.77 Aligned_cols=68 Identities=12% Similarity=0.101 Sum_probs=49.2
Q ss_pred CEEEEEECcccc-c--cchHHHHHHHHHhCCCeEEEEeCcc------cCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 51 QRVCVMTDPHLS-K--LAPVKATLDSLTRHGVKFELFDKVR------VEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 51 ~r~liVtd~~~~-~--~~~~~~i~~~L~~~gi~~~~~~~~~------~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
.++-||+-.+-. . ...+++.++.|++.|+++.+...+. ...+.+.++++.+.+.+-.+|+|+++-||-
T Consensus 44 D~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~rGGy 120 (371)
T 3tla_A 44 DTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIGGD 120 (371)
T ss_dssp CEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESCCCS
T ss_pred CEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccccc
Confidence 788888765421 1 1245777889999999988654332 345577888888888888889999998884
No 298
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=32.56 E-value=1.5e+02 Score=28.79 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=36.9
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
..+-+.+.+++.|+.+.++.. +.+.+.-.+..+.+...++|.||-++..
T Consensus 30 ~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdGiI~~~~~ 78 (295)
T 3hcw_A 30 VLLGISETCNQHGYGTQTTVS---NNMNDLMDEVYKMIKQRMVDAFILLYSK 78 (295)
T ss_dssp HHHHHHHHHHTTTCEEEECCC---CSHHHHHHHHHHHHHTTCCSEEEESCCC
T ss_pred HHHHHHHHHHHCCCEEEEEcC---CCChHHHHHHHHHHHhCCcCEEEEcCcc
Confidence 456778888889998876542 3345556678888888999999988754
No 299
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=32.52 E-value=88 Score=31.52 Aligned_cols=99 Identities=11% Similarity=0.019 Sum_probs=58.1
Q ss_pred ceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECcccc--ccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHH
Q psy2427 21 EYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLS--KLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLE 98 (660)
Q Consensus 21 ~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~--~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~ 98 (660)
.+.|++-|++---+...+-+-.+.|..++ -.++-||+..-. +....+-.....++.|++....--. .+.+.+.+++
T Consensus 24 ~~S~E~fPPk~~~~~~~l~~~~~~l~~l~-p~fvsVT~gagg~~r~~t~~~a~~i~~~~g~~~v~Hltc-~~~~~~~l~~ 101 (304)
T 3fst_A 24 NVSFEFFPPRTSEMEQTLWNSIDRLSSLK-PKFVSVTYGANSGERDRTHSIIKGIKDRTGLEAAPHLTC-IDATPDELRT 101 (304)
T ss_dssp EEEEEECCCCSHHHHHHHHHHHHHHHTTC-CSEEEECCCTTSSCHHHHHHHHHHHHHHHCCCEEEEEES-TTSCHHHHHH
T ss_pred EEEEEEcCCCCccHHHHHHHHHHHHhcCC-CCEEEEeeCCCCcchhHHHHHHHHHHHHhCCCeeEEeec-CCCCHHHHHH
Confidence 46777666664322222222245556655 456778864321 1112222223334468876642212 3578999999
Q ss_pred HHHHhHhcCCCEEEEecCchhhh
Q psy2427 99 ATKFVRSVQCDAFIAVGGGSVID 121 (660)
Q Consensus 99 ~~~~~~~~~~D~IIavGGGsviD 121 (660)
.+..+.+.+++-|+++.|-..-+
T Consensus 102 ~L~~~~~~GI~nILaLrGDpp~~ 124 (304)
T 3fst_A 102 IARDYWNNGIRHIVALRGDLPPG 124 (304)
T ss_dssp HHHHHHHTTCCEEEEECCCCC--
T ss_pred HHHHHHHCCCCEEEEecCCCCCC
Confidence 99999999999999998865543
No 300
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=32.50 E-value=1.8e+02 Score=23.86 Aligned_cols=64 Identities=19% Similarity=0.148 Sum_probs=39.2
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC-CCEEEE---ecCchhhhHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ-CDAFIA---VGGGSVIDTCKAA 126 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~-~D~IIa---vGGGsviD~AK~~ 126 (660)
.|++||-|.... .+.+...|++.|+++..+.. ..++...+.+.. +|+||- +.+...+++.+.+
T Consensus 8 ~~ilivdd~~~~----~~~l~~~L~~~g~~v~~~~~---------~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l 74 (136)
T 3hdv_A 8 PLVLVVDDNAVN----REALILYLKSRGIDAVGADG---------AEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTI 74 (136)
T ss_dssp CEEEEECSCHHH----HHHHHHHHHHTTCCEEEESS---------HHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHH
T ss_pred CeEEEECCCHHH----HHHHHHHHHHcCceEEEeCC---------HHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHH
Confidence 578888775532 25577778777887665432 234444555555 787764 4566667766655
Q ss_pred H
Q psy2427 127 N 127 (660)
Q Consensus 127 a 127 (660)
.
T Consensus 75 ~ 75 (136)
T 3hdv_A 75 R 75 (136)
T ss_dssp H
T ss_pred H
Confidence 3
No 301
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=32.49 E-value=2e+02 Score=23.39 Aligned_cols=63 Identities=10% Similarity=0.017 Sum_probs=40.8
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
.|++||-+.... .+.+...|+ .+..+..+. +..++.+.+++..+|+||- +.+...+++.+.+.
T Consensus 5 ~~ilivdd~~~~----~~~l~~~l~-~~~~v~~~~---------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~ 70 (133)
T 3nhm_A 5 PKVLIVENSWTM----RETLRLLLS-GEFDCTTAA---------DGASGLQQALAHPPDVLISDVNMDGMDGYALCGHFR 70 (133)
T ss_dssp CEEEEECSCHHH----HHHHHHHHT-TTSEEEEES---------SHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHH
T ss_pred CEEEEEcCCHHH----HHHHHHHHh-CCcEEEEEC---------CHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 578888776532 245566666 677766543 2355666777788998876 46666677776654
No 302
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=32.47 E-value=2.1e+02 Score=23.47 Aligned_cols=64 Identities=20% Similarity=0.165 Sum_probs=39.1
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
+|++||.|.... ...+...|+..|+.+..+. + ..++.+.++...+|+||- +.+..-+++.+.+.
T Consensus 4 ~~ilivdd~~~~----~~~l~~~L~~~g~~v~~~~------~---~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~ 70 (136)
T 1mvo_A 4 KKILVVDDEESI----VTLLQYNLERSGYDVITAS------D---GEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLR 70 (136)
T ss_dssp CEEEEECSCHHH----HHHHHHHHHHTTCEEEEES------S---HHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHH
T ss_pred CEEEEEECCHHH----HHHHHHHHHHCCcEEEEec------C---HHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence 578888776532 2556777877787765432 2 234455566678997764 34555566666553
No 303
>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*
Probab=32.42 E-value=2.5e+02 Score=26.91 Aligned_cols=60 Identities=10% Similarity=-0.021 Sum_probs=43.4
Q ss_pred HHHHHhCCCeEE-EEeCcccCCCHHHHHHHHHHhHhcCCCEE-EEecCchhhhHHHHHHhHh
Q psy2427 71 LDSLTRHGVKFE-LFDKVRVEPTGDSFLEATKFVRSVQCDAF-IAVGGGSVIDTCKAANLYY 130 (660)
Q Consensus 71 ~~~L~~~gi~~~-~~~~~~~~p~~~~v~~~~~~~~~~~~D~I-IavGGGsviD~AK~~a~~~ 130 (660)
.+...+.+..+. -|..++..|+.+++.+..+.+.+.++|.+ |++=--+.-|...+..+..
T Consensus 118 ~~~~~~~~~kvI~S~Hdf~~tp~~~el~~~~~~~~~~gaDivKia~~a~~~~D~l~ll~~~~ 179 (238)
T 1sfl_A 118 ITHLQQYNKEVIISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMS 179 (238)
T ss_dssp HHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHTTCCSEEEEEECCSSHHHHHHHHHHHH
T ss_pred HHHHHhcCCEEEEEecCCCCCcCHHHHHHHHHHHHHcCCCEEEEEecCCCHHHHHHHHHHHH
Confidence 333334445433 35556677888999999999999999955 7777788889998887654
No 304
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=32.28 E-value=1.3e+02 Score=29.81 Aligned_cols=86 Identities=13% Similarity=0.043 Sum_probs=51.5
Q ss_pred HHHHHHHHhc--CCCEEEEEECccccc--cchHHHHHHHHHhC-CCeEEEEeCcccCCCHHHHHHHHHHhHh--cCCCEE
Q psy2427 39 REVGMDMVNM--KAQRVCVMTDPHLSK--LAPVKATLDSLTRH-GVKFELFDKVRVEPTGDSFLEATKFVRS--VQCDAF 111 (660)
Q Consensus 39 ~~l~~~l~~~--g~~r~liVtd~~~~~--~~~~~~i~~~L~~~-gi~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~I 111 (660)
..+.++|.+. |.+|+.+|++..-.. ....+-+.+.+++. |+++... ...+-+.+...+.++.+.. .++|+|
T Consensus 115 ~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~pg~~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~aI 192 (325)
T 2x7x_A 115 RSVGNYIASSLKGKGNIVELTGLSGSTPAMERHQGFMAAISKFPDIKLIDK--ADAAWERGPAEIEMDSMLRRHPKIDAV 192 (325)
T ss_dssp HHHHHHHHHHTTTEEEEEEEESCTTSHHHHHHHHHHHHHHHTCTEEEEEEE--EECTTSHHHHHHHHHHHHHHCSCCCEE
T ss_pred HHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCCEEEee--ecCCCCHHHHHHHHHHHHHhCCCCCEE
Confidence 3466777774 888999998763211 11234466778777 7765321 1223445555454444433 368999
Q ss_pred EEecCchhhhHHHHH
Q psy2427 112 IAVGGGSVIDTCKAA 126 (660)
Q Consensus 112 IavGGGsviD~AK~~ 126 (660)
++.....++-+.+++
T Consensus 193 ~~~nd~~A~g~~~al 207 (325)
T 2x7x_A 193 YAHNDRIAPGAYQAA 207 (325)
T ss_dssp EESSTTHHHHHHHHH
T ss_pred EECCCchHHHHHHHH
Confidence 998887766665554
No 305
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=32.23 E-value=76 Score=29.11 Aligned_cols=61 Identities=18% Similarity=-0.044 Sum_probs=41.7
Q ss_pred HHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhh--HHH-HHHhHhc
Q psy2427 68 KATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVID--TCK-AANLYYC 131 (660)
Q Consensus 68 ~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD--~AK-~~a~~~~ 131 (660)
.-+.+.|++.|+++..+.-+.. +.+.+.+.++.+.+. +|+||.-||=++.+ ..+ +++....
T Consensus 26 ~~l~~~L~~~G~~v~~~~iv~D--d~~~I~~~l~~a~~~-~DlVittGG~g~~~~D~T~ea~a~~~~ 89 (172)
T 3kbq_A 26 AFIGNFLTYHGYQVRRGFVVMD--DLDEIGWAFRVALEV-SDLVVSSGGLGPTFDDMTVEGFAKCIG 89 (172)
T ss_dssp HHHHHHHHHTTCEEEEEEEECS--CHHHHHHHHHHHHHH-CSEEEEESCCSSSTTCCHHHHHHHHHT
T ss_pred HHHHHHHHHCCCEEEEEEEeCC--CHHHHHHHHHHHHhc-CCEEEEcCCCcCCcccchHHHHHHHcC
Confidence 5678889999998775544432 366777777766553 89999999887654 444 4444444
No 306
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=32.14 E-value=49 Score=33.43 Aligned_cols=83 Identities=10% Similarity=-0.028 Sum_probs=48.7
Q ss_pred eEEECcCh--HHHHHHHHHhcCCCEEEEEECccccc-cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc
Q psy2427 30 TIRIGPGV--TREVGMDMVNMKAQRVCVMTDPHLSK-LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV 106 (660)
Q Consensus 30 ~i~~G~g~--~~~l~~~l~~~g~~r~liVtd~~~~~-~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~ 106 (660)
-++||.+. ...|...+.. +.+-++|||.+.-.. .-....+.+..++.|+.+...+... + .+..+.+++.
T Consensus 3 ivf~gt~~fa~~~L~~L~~~-~~~i~~Vvt~~d~~~g~~~~~~v~~~A~~~gIpv~~~~~~~---~----~~~~~~l~~~ 74 (305)
T 2bln_A 3 TVVFAYHDMGCLGIEALLAA-GYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVN---H----PLWVERIAQL 74 (305)
T ss_dssp EEEEECHHHHHHHHHHHHHT-TCEEEEEECCCC------CCCCHHHHHHHHTCCEECCSCCC---S----HHHHHHHHHT
T ss_pred EEEEEcCHHHHHHHHHHHHC-CCcEEEEEcCCCCCCCCcCccHHHHHHHHcCCCEECCCcCC---c----HHHHHHHHhc
Confidence 35678886 3334444443 656667788653211 0000235556667799876543321 1 2456778888
Q ss_pred CCCEEEEecCchhh
Q psy2427 107 QCDAFIAVGGGSVI 120 (660)
Q Consensus 107 ~~D~IIavGGGsvi 120 (660)
++|+||.+|=|..+
T Consensus 75 ~~Dliv~~~y~~il 88 (305)
T 2bln_A 75 SPDVIFSFYYRHLI 88 (305)
T ss_dssp CCSEEEEESCCSCC
T ss_pred CCCEEEEecccccc
Confidence 99999999987664
No 307
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=31.88 E-value=2.4e+02 Score=28.59 Aligned_cols=66 Identities=12% Similarity=0.008 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcc-----------cCC----------------
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR-----------VEP---------------- 91 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~-----------~~p---------------- 91 (660)
..|...|.+.| ..+.|++.+.. .+.+...|+.+..+..-. ..+
T Consensus 33 ~~La~~L~~~G-heV~v~~~~~~---------~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (398)
T 4fzr_A 33 VPLSWALRAAG-HEVLVAASENM---------GPTVTGAGLPFAPTCPSLDMPEVLSWDREGNRTTMPREEKPLLEHIGR 102 (398)
T ss_dssp HHHHHHHHHTT-CEEEEEEEGGG---------HHHHHHTTCCEEEEESSCCHHHHHSBCTTSCBCCCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CEEEEEcCHHH---------HHHHHhCCCeeEecCCccchHhhhhhhccCcccccccchhhHHHHHHH
Confidence 35777888888 68888876432 234555788877654200 000
Q ss_pred -----CHHHHHHHHHHhHhcCCCEEEEe
Q psy2427 92 -----TGDSFLEATKFVRSVQCDAFIAV 114 (660)
Q Consensus 92 -----~~~~v~~~~~~~~~~~~D~IIav 114 (660)
....+.++.+.+++.++|+||+=
T Consensus 103 ~~~~~~~~~~~~l~~~~~~~~pDlVv~d 130 (398)
T 4fzr_A 103 GYGRLVLRMRDEALALAERWKPDLVLTE 130 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 01233467777888999999853
No 308
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=31.65 E-value=2.1e+02 Score=23.41 Aligned_cols=64 Identities=13% Similarity=0.086 Sum_probs=40.4
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
.|++||-|.... .+.+...|+..|+.+..+.. ..++.+.++...+|+||- +.+..-+++.+.+.
T Consensus 4 ~~Ilivdd~~~~----~~~l~~~L~~~g~~v~~~~~---------~~~al~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~ 70 (132)
T 3crn_A 4 KRILIVDDDTAI----LDSTKQILEFEGYEVEIAAT---------AGEGLAKIENEFFNLALFXIKLPDMEGTELLEKAH 70 (132)
T ss_dssp CEEEEECSCHHH----HHHHHHHHHHTTCEEEEESS---------HHHHHHHHHHSCCSEEEECSBCSSSBHHHHHHHHH
T ss_pred cEEEEEeCCHHH----HHHHHHHHHHCCceEEEeCC---------HHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHH
Confidence 578888776542 24566777777877654322 234556666778998874 45666667766553
No 309
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=31.53 E-value=2.3e+02 Score=23.74 Aligned_cols=65 Identities=18% Similarity=0.139 Sum_probs=42.0
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
-|++||-|.... ...+...|++.|..+..+.. .+++.+.++...+|+||- +.|+.-+++.+.+.
T Consensus 15 ~~iLivdd~~~~----~~~l~~~L~~~g~~v~~~~~---------~~~al~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr 81 (143)
T 3m6m_D 15 MRMLVADDHEAN----RMVLQRLLEKAGHKVLCVNG---------AEQVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLR 81 (143)
T ss_dssp CEEEEECSSHHH----HHHHHHHHHC--CEEEEESS---------HHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred ceEEEEeCCHHH----HHHHHHHHHHcCCeEEEeCC---------HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 478888776542 24567778777877665432 245566667788998875 46777788887775
Q ss_pred h
Q psy2427 128 L 128 (660)
Q Consensus 128 ~ 128 (660)
.
T Consensus 82 ~ 82 (143)
T 3m6m_D 82 V 82 (143)
T ss_dssp H
T ss_pred h
Confidence 4
No 310
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=31.52 E-value=2.4e+02 Score=23.82 Aligned_cols=63 Identities=13% Similarity=0.127 Sum_probs=40.4
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCC-CEEEE---ecCchhhhHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQC-DAFIA---VGGGSVIDTCKAA 126 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~-D~IIa---vGGGsviD~AK~~ 126 (660)
.|++||-|.... .+.+...|+. |+.+..+. +..++.+.+++.++ |+||. +.++..+++.+.+
T Consensus 5 ~~ILivdd~~~~----~~~l~~~L~~-~~~v~~~~---------~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l 70 (151)
T 3kcn_A 5 ERILLVDDDYSL----LNTLKRNLSF-DFEVTTCE---------SGPEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKA 70 (151)
T ss_dssp CEEEEECSCHHH----HHHHHHHHTT-TSEEEEES---------SHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHH
T ss_pred CeEEEEeCCHHH----HHHHHHHhcc-CceEEEeC---------CHHHHHHHHHcCCCCCEEEEeCCCCCCcHHHHHHHH
Confidence 588888776532 2456667754 77766543 23455666666664 98875 4677777877766
Q ss_pred H
Q psy2427 127 N 127 (660)
Q Consensus 127 a 127 (660)
.
T Consensus 71 ~ 71 (151)
T 3kcn_A 71 R 71 (151)
T ss_dssp H
T ss_pred H
Confidence 5
No 311
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=31.45 E-value=1.3e+02 Score=24.78 Aligned_cols=63 Identities=16% Similarity=0.192 Sum_probs=39.0
Q ss_pred EEEEEECccccccchHHHHHHHHHhCCCeEE-EEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 52 RVCVMTDPHLSKLAPVKATLDSLTRHGVKFE-LFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 52 r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~-~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
|++||-|.... .+.+...|++.|+.+. .+.. ..++.+.+++..+|+||. +.+...+++.+.+.
T Consensus 3 ~ilivdd~~~~----~~~l~~~L~~~g~~v~~~~~~---------~~~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~ 69 (134)
T 3f6c_A 3 NAIIIDDHPLA----IAAIRNLLIKNDIEILAELTE---------GGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLR 69 (134)
T ss_dssp EEEEECCCHHH----HHHHHHHHHHTTEEEEEEESS---------STTHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHH
T ss_pred EEEEEcCCHHH----HHHHHHHHhhCCcEEEEEcCC---------HHHHHHHHHhcCCCEEEEecCCCCCChHHHHHHHH
Confidence 67777665532 2567778888886654 3322 123455666678998875 45666667666654
No 312
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=31.39 E-value=68 Score=26.91 Aligned_cols=64 Identities=14% Similarity=0.032 Sum_probs=40.9
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecC--chhhhHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGG--GSVIDTCKA 125 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGG--GsviD~AK~ 125 (660)
.|++||-|.... .+.+...|++.|+++..+. +..++.+.+++..+|+||- +.+ ..-+++.+.
T Consensus 7 ~~ilivdd~~~~----~~~l~~~L~~~g~~v~~~~---------~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~ 73 (136)
T 3kto_A 7 PIIYLVDHQKDA----RAALSKLLSPLDVTIQCFA---------SAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLET 73 (136)
T ss_dssp CEEEEECSCHHH----HHHHHHHHTTSSSEEEEES---------SHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHH
T ss_pred CeEEEEcCCHHH----HHHHHHHHHHCCcEEEEeC---------CHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHH
Confidence 578888776532 2567778888888766543 2345566667777897775 344 555666665
Q ss_pred HH
Q psy2427 126 AN 127 (660)
Q Consensus 126 ~a 127 (660)
+.
T Consensus 74 l~ 75 (136)
T 3kto_A 74 LV 75 (136)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 313
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=31.37 E-value=1.3e+02 Score=29.98 Aligned_cols=86 Identities=9% Similarity=0.137 Sum_probs=51.8
Q ss_pred HHHHHHHHhcCCCEEEEEECccccc-cchHHHHHHHHHhCCCe---EEEEeCcccCCCHHHHHHHHHHhHh--cCCCEEE
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSK-LAPVKATLDSLTRHGVK---FELFDKVRVEPTGDSFLEATKFVRS--VQCDAFI 112 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~-~~~~~~i~~~L~~~gi~---~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~II 112 (660)
..+.++|.+.|.+|+.+++++.... ....+-+.+.|++.|+. ..++. ..+.+.+...++.+.+.+ .++|+|+
T Consensus 167 ~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~ll~~~~~~~ai~ 244 (339)
T 3h5o_A 167 AAITRHLLSRGKRRIGFLGAQLDERVMKRLDGYRAALDAADCRDAGLEWLD--PQPSSMQMGADMLDRALAERPDCDALF 244 (339)
T ss_dssp HHHHHHHHHTTCCSEEEEEESCCHHHHHHHHHHHHHHHHTTCCCGGGEEEE--CSCCCHHHHHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHCCCCeEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCChheEe--cCCCCHHHHHHHHHHHHcCCCCCcEEE
Confidence 4467788888999999998764211 11224466778888872 12221 234555655555554443 3689999
Q ss_pred EecCchhhhHHHHH
Q psy2427 113 AVGGGSVIDTCKAA 126 (660)
Q Consensus 113 avGGGsviD~AK~~ 126 (660)
+.....++-+.+++
T Consensus 245 ~~nD~~A~g~~~al 258 (339)
T 3h5o_A 245 CCNDDLAIGALARS 258 (339)
T ss_dssp ESSHHHHHHHHHHH
T ss_pred ECChHHHHHHHHHH
Confidence 97766555555444
No 314
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=31.36 E-value=31 Score=39.50 Aligned_cols=56 Identities=16% Similarity=0.205 Sum_probs=40.8
Q ss_pred HHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCc
Q psy2427 94 DSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGT 167 (660)
Q Consensus 94 ~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gt 167 (660)
+...++++.++++++|.+|.|||--.++.+..++..... .....+|+|.||-|.-.
T Consensus 471 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~------------------~~~~~i~vvgiPkTIDN 526 (766)
T 3o8o_B 471 ADLGMIAYYFQKYEFDGLIIVGGFEAFESLHQLERARES------------------YPAFRIPMVLIPATLSN 526 (766)
T ss_dssp GCHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHTTTTT------------------CGGGCSCCCEEEBCTTC
T ss_pred chHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHh------------------cCccCCcEEeecccccc
Confidence 356788999999999999999998788877766532110 00012899999999743
No 315
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=31.31 E-value=84 Score=30.34 Aligned_cols=87 Identities=1% Similarity=0.001 Sum_probs=47.9
Q ss_pred HHHHHHHHhcCCCEEEEEECcccc-ccchHHHHHHHHHhCCCeEE---EEe-CcccCCCHHHHHHHHHHhHhc-C--CCE
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLS-KLAPVKATLDSLTRHGVKFE---LFD-KVRVEPTGDSFLEATKFVRSV-Q--CDA 110 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~-~~~~~~~i~~~L~~~gi~~~---~~~-~~~~~p~~~~v~~~~~~~~~~-~--~D~ 110 (660)
..+.++|.+.|.+|+.+++++... .....+-+.+.+++.|+... ++. ....... .....+.+.+... + +|+
T Consensus 126 ~~a~~~L~~~G~~~i~~i~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~a 204 (298)
T 3tb6_A 126 MMAAEHLLSLGHTHMMGIFKADDTQGVKRMNGFIQAHRERELFPSPDMIVTFTTEEKES-KLLEKVKATLEKNSKHMPTA 204 (298)
T ss_dssp HHHHHHHHHTTCCSEEEEEESSSHHHHHHHHHHHHHHHHTTCCCCGGGEEEECHHHHTT-HHHHHHHHHHHHTTTSCCSE
T ss_pred HHHHHHHHHCCCCcEEEEcCCCCccHHHHHHHHHHHHHHcCCCCCcceEEEecccchhh-hHHHHHHHHHhcCCCCCCeE
Confidence 446778888899999999875431 11223456778888887532 111 1110111 0122233333332 3 899
Q ss_pred EEEecCchhhhHHHHH
Q psy2427 111 FIAVGGGSVIDTCKAA 126 (660)
Q Consensus 111 IIavGGGsviD~AK~~ 126 (660)
|++.....++-+.+++
T Consensus 205 i~~~~d~~a~g~~~al 220 (298)
T 3tb6_A 205 ILCYNDEIALKVIDML 220 (298)
T ss_dssp EECSSHHHHHHHHHHH
T ss_pred EEEeCcHHHHHHHHHH
Confidence 9998776665555544
No 316
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=31.06 E-value=96 Score=30.87 Aligned_cols=86 Identities=13% Similarity=0.049 Sum_probs=50.5
Q ss_pred HHHHHHHHhc-C-CCEEEEEECccccc-cchHHHHHHHHHhCCC-eEEEEeCcccCCCHHHHHHHHHHhHh--cCCCEEE
Q psy2427 39 REVGMDMVNM-K-AQRVCVMTDPHLSK-LAPVKATLDSLTRHGV-KFELFDKVRVEPTGDSFLEATKFVRS--VQCDAFI 112 (660)
Q Consensus 39 ~~l~~~l~~~-g-~~r~liVtd~~~~~-~~~~~~i~~~L~~~gi-~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~II 112 (660)
..+.++|.+. | .+|+.+|++..... ....+-+++.|++.|+ +.... ...+.+.+...+.++.+.. .++|+|+
T Consensus 162 ~~a~~~L~~~~Gg~~~I~~i~~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~ 239 (342)
T 1jx6_A 162 RELATEFGKFFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNNFELQSA--YYTKATKQSGYDAAKASLAKHPDVDFIY 239 (342)
T ss_dssp HHHHHHHHHHSCTTCEEEEECCSTTHHHHHHHHHHHHHHHHHHCCEEEEE--ECCCSSHHHHHHHHHHHHHHCCCCSEEE
T ss_pred HHHHHHHHHHcCCCceEEEEEcCCcchhhHHHHHHHHHHHhCCCcEEEEE--ecCCCCHHHHHHHHHHHHHhCCCccEEE
Confidence 4466777775 7 89999998764211 1122445667777665 32211 2234455555555554433 3589999
Q ss_pred EecCchhhhHHHHH
Q psy2427 113 AVGGGSVIDTCKAA 126 (660)
Q Consensus 113 avGGGsviD~AK~~ 126 (660)
+.....++-+.+++
T Consensus 240 ~~nd~~A~g~~~al 253 (342)
T 1jx6_A 240 ACSTDVALGAVDAL 253 (342)
T ss_dssp ESSHHHHHHHHHHH
T ss_pred ECCChhHHHHHHHH
Confidence 98877766665554
No 317
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=30.98 E-value=1.2e+02 Score=29.69 Aligned_cols=87 Identities=11% Similarity=0.012 Sum_probs=49.7
Q ss_pred HHHHHHHH-hcCCCEEEEEECcccccc--chHHHHHHHHHhC----CCeEEEEeCcccCCCHHHHHHHHHH-hHh--cCC
Q psy2427 39 REVGMDMV-NMKAQRVCVMTDPHLSKL--APVKATLDSLTRH----GVKFELFDKVRVEPTGDSFLEATKF-VRS--VQC 108 (660)
Q Consensus 39 ~~l~~~l~-~~g~~r~liVtd~~~~~~--~~~~~i~~~L~~~----gi~~~~~~~~~~~p~~~~v~~~~~~-~~~--~~~ 108 (660)
..+.++|. ..|.+|+.++++..-... ...+-+++.|++. ++.+.. .....+.+.+...+.++. ++. .++
T Consensus 111 ~~a~~~L~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~ 189 (313)
T 3m9w_A 111 ELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGKIKVVG-DQWVDGWLPENALKIMENALTANNNKI 189 (313)
T ss_dssp HHHHHHHHHHCSSEEEEEEESCTTCHHHHHHHHHHHHHHHHHHHTTSEEEEE-EEECGGGCHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHhCCCCcEEEEECCCCCccHHHHHHHHHHHHHhhccCCCEEEEe-eccCCCcCHHHHHHHHHHHHHhCCCCe
Confidence 34667777 788889999987542211 1223455566654 454431 111233455555444444 444 378
Q ss_pred CEEEEecCchhhhHHHHH
Q psy2427 109 DAFIAVGGGSVIDTCKAA 126 (660)
Q Consensus 109 D~IIavGGGsviD~AK~~ 126 (660)
|+|++.....++-+.+++
T Consensus 190 ~ai~~~~d~~a~g~~~al 207 (313)
T 3m9w_A 190 DAVVASNDATAGGAIQAL 207 (313)
T ss_dssp CEEEESSHHHHHHHHHHH
T ss_pred eEEEECCCchHHHHHHHH
Confidence 999999877666555554
No 318
>4eys_A MCCC family protein; MCCF like, serine peptidase, csgid, structural genomics, NIA national institute of allergy and infectious diseases; HET: AMP; 1.58A {Streptococcus pneumoniae} PDB: 4e94_A*
Probab=30.90 E-value=84 Score=32.26 Aligned_cols=68 Identities=9% Similarity=0.088 Sum_probs=47.3
Q ss_pred CEEEEEECcc-ccc----cchHHHHHHHHHhCCCeEEEEeCccc------CCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 51 QRVCVMTDPH-LSK----LAPVKATLDSLTRHGVKFELFDKVRV------EPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 51 ~r~liVtd~~-~~~----~~~~~~i~~~L~~~gi~~~~~~~~~~------~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
.++-||+-.+ +.. ...+++.++.|++.|+++.+...+.. ..+.+.++++.+.+.+-.+|+|+++-||-
T Consensus 6 D~I~ivaPSs~~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGG~ 84 (346)
T 4eys_A 6 STIGIVSLSSGIIGEDFVKHEVDLGIQRLKDLGLNPIFLPHSLKGLDFIKDHPEARAEDLIHAFSDDSIDMILCAIGGD 84 (346)
T ss_dssp CEEEEECSSCCGGGSGGGHHHHHHHHHHHHHTTCEEEECTTTTSCHHHHHHCHHHHHHHHHHHHHCTTCCEEEECCCCS
T ss_pred cEEEEEeCCCcccccccCHHHHHHHHHHHHhCCCEEEECCchhccCCccCCCHHHHHHHHHHHhhCCCCCEEEEccccc
Confidence 5777887444 221 12357778899999999886544322 23466778888888888999999997774
No 319
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=30.84 E-value=3.4e+02 Score=26.01 Aligned_cols=50 Identities=8% Similarity=-0.082 Sum_probs=35.9
Q ss_pred hHHHHHHHHHhCCC-eEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 66 PVKATLDSLTRHGV-KFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 66 ~~~~i~~~L~~~gi-~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
..+-+.+.+++.|. ++.+++. +.+.+.-.+.++.+...++|.||-.+...
T Consensus 20 ~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~vdgiii~~~~~ 70 (309)
T 2fvy_A 20 VRKAIEQDAKAAPDVQLLMNDS---QNDQSKQNDQIDVLLAKGVKALAINLVDP 70 (309)
T ss_dssp HHHHHHHHHHTCTTEEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSSG
T ss_pred HHHHHHHHHHhcCCeEEEEecC---CCCHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 45667788888897 8776643 34556666777777888999999876543
No 320
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=30.77 E-value=1e+02 Score=26.42 Aligned_cols=87 Identities=9% Similarity=0.056 Sum_probs=0.0
Q ss_pred CCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHH----------HHHHHHHhHhcCCC-EEEEecCc
Q psy2427 49 KAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDS----------FLEATKFVRSVQCD-AFIAVGGG 117 (660)
Q Consensus 49 g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~----------v~~~~~~~~~~~~D-~IIavGGG 117 (660)
+.+|++||.... ....+.+.|.+.. .+.+..-+..++.... .+++.+.+++.++| +|||++..
T Consensus 3 ~~~~vlIiGaG~-----~g~~l~~~l~~~~-g~~vvg~~d~~~~~~g~~i~g~pV~g~~~l~~~~~~~~id~viia~~~~ 76 (141)
T 3nkl_A 3 AKKKVLIYGAGS-----AGLQLANMLRQGK-EFHPIAFIDDDRKKHKTTMQGITIYRPKYLERLIKKHCISTVLLAVPSA 76 (141)
T ss_dssp CCEEEEEECCSH-----HHHHHHHHHHHSS-SEEEEEEECSCGGGTTCEETTEEEECGGGHHHHHHHHTCCEEEECCTTS
T ss_pred CCCEEEEECCCH-----HHHHHHHHHHhCC-CcEEEEEEECCcccCCCEecCeEEECHHHHHHHHHHCCCCEEEEeCCCC
Q ss_pred hhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcC
Q psy2427 118 SVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPT 163 (660)
Q Consensus 118 sviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPT 163 (660)
+.-..-+.+..+...+ +.+..+|.
T Consensus 77 ~~~~~~~i~~~l~~~g----------------------v~v~~vP~ 100 (141)
T 3nkl_A 77 SQVQKKVIIESLAKLH----------------------VEVLTIPN 100 (141)
T ss_dssp CHHHHHHHHHHHHTTT----------------------CEEEECCC
T ss_pred CHHHHHHHHHHHHHcC----------------------CeEEECCC
No 321
>3k7p_A Ribose 5-phosphate isomerase; pentose phosphate pathway, type B ribose 5-phosphate isomera (RPIB), R5P; 1.40A {Trypanosoma cruzi} SCOP: c.121.1.0 PDB: 3k7s_A* 3k7o_A* 3k8c_A* 3m1p_A
Probab=30.77 E-value=1.7e+02 Score=26.91 Aligned_cols=63 Identities=13% Similarity=0.035 Sum_probs=42.4
Q ss_pred EEEEEECccccccchHHHHHHHHHh--CCCeEEEEeCcccC-CC-HHHHHHHHHHhHhcCCCEEEEecC
Q psy2427 52 RVCVMTDPHLSKLAPVKATLDSLTR--HGVKFELFDKVRVE-PT-GDSFLEATKFVRSVQCDAFIAVGG 116 (660)
Q Consensus 52 r~liVtd~~~~~~~~~~~i~~~L~~--~gi~~~~~~~~~~~-p~-~~~v~~~~~~~~~~~~D~IIavGG 116 (660)
|+.|-+|..-.+. -+.|++.|++ .|.++.-|.-...+ .+ .+....+++.+.+..+|.-|.|.|
T Consensus 24 kIaIgsDhaG~~l--K~~i~~~L~~~~~G~eV~D~G~~s~~s~DYPd~a~~vA~~V~~g~~d~GIliCG 90 (179)
T 3k7p_A 24 RVAIGTDHPAFAI--HENLILYVKEAGDEFVPVYCGPKTAESVDYPDFASRVAEMVARKEVEFGVLAAG 90 (179)
T ss_dssp EEEEEECTGGGGG--HHHHHHHHHHTCTTEEEEECSCSSSSCCCHHHHHHHHHHHHHTTSSSEEEEEES
T ss_pred EEEEEECchHHHH--HHHHHHHHHhcCCCCeEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcc
Confidence 7888888775543 4789999999 88887766433222 23 455566677777788886555544
No 322
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=30.59 E-value=47 Score=30.11 Aligned_cols=61 Identities=20% Similarity=0.229 Sum_probs=35.0
Q ss_pred CEEEEEECccccc--cchHHHHHHHHHhCCCe---EEEEeCcccCCC-HHHHHHHHHHhHhcCCCEEEEec
Q psy2427 51 QRVCVMTDPHLSK--LAPVKATLDSLTRHGVK---FELFDKVRVEPT-GDSFLEATKFVRSVQCDAFIAVG 115 (660)
Q Consensus 51 ~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~---~~~~~~~~~~p~-~~~v~~~~~~~~~~~~D~IIavG 115 (660)
.|+.||..+.-.. ...++-.++.|++.|+. +.++. + |. +|-=..+.+.++..++|.||++|
T Consensus 12 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~Gv~~~~i~v~~-V---PGafEiP~aa~~la~~~~yDavIaLG 78 (157)
T 2obx_A 12 VRIAVVRARWHADIVDQCVSAFEAEMADIGGDRFAVDVFD-V---PGAYEIPLHARTLAETGRYGAVLGTA 78 (157)
T ss_dssp EEEEEEEECTTHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-E---SSGGGHHHHHHHHHHHTCCSEEEEEE
T ss_pred CEEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCccceEEEE-C---CcHHHHHHHHHHHHhcCCCCEEEEee
Confidence 4777877664222 12456677788877753 33332 2 22 22222233345567899999997
No 323
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=30.35 E-value=1.4e+02 Score=27.16 Aligned_cols=63 Identities=16% Similarity=0.093 Sum_probs=41.4
Q ss_pred EEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccC--CC-HHHHHHHHHHhHhcCCCEEEEecC
Q psy2427 52 RVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVE--PT-GDSFLEATKFVRSVQCDAFIAVGG 116 (660)
Q Consensus 52 r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~--p~-~~~v~~~~~~~~~~~~D~IIavGG 116 (660)
|+.|-+|..-.+ +-+.+++.|++.|.++.-|.-...+ .+ .+....+++.+.+..+|.-|-|.|
T Consensus 5 kIaigsDhaG~~--lK~~i~~~L~~~G~eV~D~G~~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCG 70 (162)
T 2vvp_A 5 RVYLGADHAGYE--LKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAAATRTVADPGSLGIVLGG 70 (162)
T ss_dssp EEEEEECHHHHH--HHHHHHHHHHHTTCEEEECSCCSCCTTCCHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred EEEEEeCchhHH--HHHHHHHHHHHCCCEEEEeCCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEeC
Confidence 667777765443 3477999999999998876433333 23 445566667777778886665554
No 324
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=30.17 E-value=54 Score=29.66 Aligned_cols=61 Identities=13% Similarity=0.191 Sum_probs=37.3
Q ss_pred CEEEEEECccccc--cchHHHHHHHHHhCCCe--EEEEeCcccCCCHHHHHHHHH-HhHhcCCCEEEEec
Q psy2427 51 QRVCVMTDPHLSK--LAPVKATLDSLTRHGVK--FELFDKVRVEPTGDSFLEATK-FVRSVQCDAFIAVG 115 (660)
Q Consensus 51 ~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~--~~~~~~~~~~p~~~~v~~~~~-~~~~~~~D~IIavG 115 (660)
-|+.||..+.-.. ...++-.++.|++.|+. +.++. -|..-++--+++ .++..++|.||++|
T Consensus 14 ~ri~IV~arfn~~I~~~Ll~ga~~~l~~~Gv~~~i~v~~----VPGafEiP~aa~~la~~~~yDavIaLG 79 (156)
T 1c2y_A 14 FRFAIVVARFNEFVTRRLMEGALDTFKKYSVNEDIDVVW----VPGAYELGVTAQALGKSGKYHAIVCLG 79 (156)
T ss_dssp CCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCSCCEEEE----ESSHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCCceEEEE----CCcHHHHHHHHHHHHhcCCCCEEEEec
Confidence 4677777664222 12557778889888863 33332 344444444444 44567899999997
No 325
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=30.17 E-value=89 Score=31.63 Aligned_cols=84 Identities=8% Similarity=0.047 Sum_probs=49.5
Q ss_pred eEEECcChHHH-HHHHHHhcCCCEEEEEECcc--c-ccc-chHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhH
Q psy2427 30 TIRIGPGVTRE-VGMDMVNMKAQRVCVMTDPH--L-SKL-APVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVR 104 (660)
Q Consensus 30 ~i~~G~g~~~~-l~~~l~~~g~~r~liVtd~~--~-~~~-~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~ 104 (660)
-+++|..-+.. .-+.|.+.|.+-+.|||.+. . +.. -....+.+..++.|+.+...... .+ .+..+.++
T Consensus 5 ivf~Gtp~fa~~~L~~L~~~~~~v~~Vvt~pd~~~grg~~l~~~~v~~~A~~~gIpv~~~~~~---~~----~~~~~~l~ 77 (314)
T 3tqq_A 5 IVFAGTPQFAVPTLRALIDSSHRVLAVYTQPDRPSGRGQKIMESPVKEIARQNEIPIIQPFSL---RD----EVEQEKLI 77 (314)
T ss_dssp EEEEECSGGGHHHHHHHHHSSSEEEEEECCCC----------CCHHHHHHHHTTCCEECCSCS---SS----HHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEEeCCCCccccCCccCCCHHHHHHHHcCCCEECcccC---CC----HHHHHHHH
Confidence 45678875442 22334445656677888432 1 100 01134667777889986432221 12 25677888
Q ss_pred hcCCCEEEEecCchhh
Q psy2427 105 SVQCDAFIAVGGGSVI 120 (660)
Q Consensus 105 ~~~~D~IIavGGGsvi 120 (660)
+.++|+||.+|=|..+
T Consensus 78 ~~~~Dliv~~~~~~il 93 (314)
T 3tqq_A 78 AMNADVMVVVAYGLIL 93 (314)
T ss_dssp TTCCSEEEEESCCSCC
T ss_pred hcCCCEEEEcCccccc
Confidence 9999999999998665
No 326
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=30.14 E-value=2.1e+02 Score=27.43 Aligned_cols=49 Identities=16% Similarity=0.140 Sum_probs=36.5
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
..+-+.+.+++.|+.+.++.. +.+.+.-.+..+.+...++|.||-.+..
T Consensus 34 ~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 82 (289)
T 2fep_A 34 LARGIEDIATMYKYNIILSNS---DQNMEKELHLLNTMLGKQVDGIVFMGGN 82 (289)
T ss_dssp HHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred HHHHHHHHHHHcCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 456677888889998876642 3455666677888888899999988753
No 327
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=30.13 E-value=46 Score=30.17 Aligned_cols=61 Identities=18% Similarity=0.235 Sum_probs=35.3
Q ss_pred CEEEEEECccccc--cchHHHHHHHHHhCCCe---EEEEeCcccCCC-HHHHHHHHHHhHhcCCCEEEEec
Q psy2427 51 QRVCVMTDPHLSK--LAPVKATLDSLTRHGVK---FELFDKVRVEPT-GDSFLEATKFVRSVQCDAFIAVG 115 (660)
Q Consensus 51 ~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~---~~~~~~~~~~p~-~~~v~~~~~~~~~~~~D~IIavG 115 (660)
-|+.||..+.-.. ...++-.++.|++.|+. +.++. + |. +|-=..+.+.++..++|.||++|
T Consensus 11 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~gv~~~~i~v~~-V---PGafEiP~aa~~la~~~~yDavIaLG 77 (158)
T 1di0_A 11 FKIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFD-V---PGAYEIPLHAKTLARTGRYAAIVGAA 77 (158)
T ss_dssp EEEEEEEECTTHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-E---SSGGGHHHHHHHHHHTSCCSEEEEEE
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEE-C---CcHHHHHHHHHHHHhcCCCCEEEEee
Confidence 4777877664322 12456677788887753 33332 1 22 22222333345567899999997
No 328
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=30.11 E-value=2.4e+02 Score=26.51 Aligned_cols=64 Identities=22% Similarity=0.118 Sum_probs=42.3
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
.|++||-|.... .+.+...|+..|+++..+. +..++.+.++...+|+||- +.+++-+++.+.+.
T Consensus 24 ~~ILivdd~~~~----~~~l~~~L~~~g~~v~~~~---------~~~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr 90 (250)
T 3r0j_A 24 ARVLVVDDEANI----VELLSVSLKFQGFEVYTAT---------NGAQALDRARETRPDAVILDVXMPGMDGFGVLRRLR 90 (250)
T ss_dssp CEEEEECSCHHH----HHHHHHHHHHTTCEEEEES---------SHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred ceEEEEECCHHH----HHHHHHHHHHCCCEEEEEC---------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 588888876543 2456777777888765442 2345566667778997775 45666677777664
No 329
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=30.10 E-value=1.2e+02 Score=27.45 Aligned_cols=61 Identities=13% Similarity=0.278 Sum_probs=36.6
Q ss_pred CEEEEEECccccc--cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHH-HhHh-----cCCCEEEEec
Q psy2427 51 QRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATK-FVRS-----VQCDAFIAVG 115 (660)
Q Consensus 51 ~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~-~~~~-----~~~D~IIavG 115 (660)
-|+.||..+.-.. ...++-.++.|++.|.++.++.- |..-++--+++ .++. .++|.||++|
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~~i~v~~V----PGafEiP~aa~~la~~~~~~~~~yDavIaLG 81 (157)
T 2i0f_A 13 PHLLIVEARFYDDLADALLDGAKAALDEAGATYDVVTV----PGALEIPATISFALDGADNGGTEYDGFVALG 81 (157)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHHHTTCEEEEEEE----SSGGGHHHHHHHHHHHHHTTCCCCSEEEEEE
T ss_pred cEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCeEEEEC----CcHHHHHHHHHHHHhhccccCCCCCEEEEee
Confidence 4788887764222 12557778889888866665532 32222222333 3333 6799999997
No 330
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=30.09 E-value=2.2e+02 Score=27.92 Aligned_cols=88 Identities=13% Similarity=0.077 Sum_probs=49.1
Q ss_pred HHHHHHHh---cCCCEEEEEECccccc--cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHh-Hh-cCCCEEE
Q psy2427 40 EVGMDMVN---MKAQRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFV-RS-VQCDAFI 112 (660)
Q Consensus 40 ~l~~~l~~---~g~~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~-~~-~~~D~II 112 (660)
.+.++|.+ .|.+|+.++.+..... ....+-..+.|++.+..+.+......+-+.+...+..+.+ .. .++|+|+
T Consensus 115 ~~~~~L~~~~~~g~~~i~~i~g~~~~~~~~~r~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~aI~ 194 (316)
T 1tjy_A 115 MLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAII 194 (316)
T ss_dssp HHHHHHHHHHCSSSEEEEEEESCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCSSCCEEE
T ss_pred HHHHHHHHHcCCCCCEEEEEEcCCCChhHHHHHHHHHHHHHhhCCCcEEEEeccCCCCHHHHHHHHHHHHHhCCCCCEEE
Confidence 35566666 5778999998753211 1223446667765432222222222344555554444443 33 3689999
Q ss_pred EecCchhhhHHHHHH
Q psy2427 113 AVGGGSVIDTCKAAN 127 (660)
Q Consensus 113 avGGGsviD~AK~~a 127 (660)
+...+.++-+.+++.
T Consensus 195 ~~nD~~A~g~~~al~ 209 (316)
T 1tjy_A 195 APDANALPAAAQAAE 209 (316)
T ss_dssp ECSTTHHHHHHHHHH
T ss_pred ECCCccHHHHHHHHH
Confidence 998877766666553
No 331
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=29.80 E-value=3e+02 Score=26.38 Aligned_cols=51 Identities=2% Similarity=-0.094 Sum_probs=36.4
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
..+-+.+.+++.|+++.++.. ...-+.+.-.+..+.+...++|.||-.+..
T Consensus 21 ~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~i~~l~~~~vdgiii~~~~ 71 (297)
T 3rot_A 21 LFQGAKKAAEELKVDLQILAP-PGANDVPKQVQFIESALATYPSGIATTIPS 71 (297)
T ss_dssp HHHHHHHHHHHHTCEEEEECC-SSSCCHHHHHHHHHHHHHTCCSEEEECCCC
T ss_pred HHHHHHHHHHHhCcEEEEECC-CCcCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 446677788888999887642 111366677788888888899999976543
No 332
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=29.70 E-value=1.1e+02 Score=30.99 Aligned_cols=20 Identities=5% Similarity=0.022 Sum_probs=16.4
Q ss_pred HHHHHHHhHhcCCCEEEEec
Q psy2427 96 FLEATKFVRSVQCDAFIAVG 115 (660)
Q Consensus 96 v~~~~~~~~~~~~D~IIavG 115 (660)
+.++.+.+++.++|+||.-.
T Consensus 103 ~~~l~~~l~~~~PD~Vv~~~ 122 (391)
T 3tsa_A 103 LPEYLRLAEAWRPSVLLVDV 122 (391)
T ss_dssp HHHHHHHHHHHCCSEEEEET
T ss_pred HHHHHHHHHhcCCCEEEeCc
Confidence 66777888899999999863
No 333
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=29.64 E-value=1.2e+02 Score=27.78 Aligned_cols=61 Identities=21% Similarity=0.210 Sum_probs=35.2
Q ss_pred CEEEEEECccccc--cchHHHHHHHHHhCCCe---EEEEeCcccCCCHHHHHHHHHHh-H-----hcCCCEEEEec
Q psy2427 51 QRVCVMTDPHLSK--LAPVKATLDSLTRHGVK---FELFDKVRVEPTGDSFLEATKFV-R-----SVQCDAFIAVG 115 (660)
Q Consensus 51 ~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~---~~~~~~~~~~p~~~~v~~~~~~~-~-----~~~~D~IIavG 115 (660)
-|+.||..+.-.. ...++-.++.|++.|+. +.++.- |..-++--+++.+ + ..++|.||++|
T Consensus 17 ~ri~IV~arfn~~I~~~Ll~gA~~~L~~~Gv~~~~i~v~~V----PGafEiP~aak~la~~~~~~~~~yDavIaLG 88 (168)
T 1ejb_A 17 IRVGIIHARWNRVIIDALVKGAIERMASLGVEENNIIIETV----PGSYELPWGTKRFVDRQAKLGKPLDVVIPIG 88 (168)
T ss_dssp CCEEEEECCTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEC----SSGGGHHHHHHHHHHHHHHTTCCCSEEEEEE
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEEC----CcHHHHHHHHHHHHhhccccCCCcCEEEEec
Confidence 4788887765322 13557778889888863 444432 3222222222222 2 46799999997
No 334
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=29.40 E-value=2.1e+02 Score=29.23 Aligned_cols=73 Identities=11% Similarity=0.072 Sum_probs=42.0
Q ss_pred CEEEEEECccccccch----HHHHHHHHHhCC--CeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHH
Q psy2427 51 QRVCVMTDPHLSKLAP----VKATLDSLTRHG--VKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCK 124 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~----~~~i~~~L~~~g--i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK 124 (660)
.++-+|+...+...++ .+-+.+..++.| +++..++. .+..+...+.++.+.+.++|.||+.|.+ ..|..+
T Consensus 27 ~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~~~~~~~e~---~~~~~d~~~~l~~l~~~g~d~Ii~~g~~-~~~~~~ 102 (356)
T 3s99_A 27 LKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKVETTFLEN---VAEGADAERSIKRIARAGNKLIFTTSFG-YMDPTV 102 (356)
T ss_dssp EEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTTEEEEEECS---CCTTHHHHHHHHHHHHTTCSEEEECSGG-GHHHHH
T ss_pred CEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCceEEEEEec---CCCHHHHHHHHHHHHHCCCCEEEECCHH-HHHHHH
Confidence 4677777433333222 233444555557 66654443 2333456778888888899999998654 344443
Q ss_pred HHH
Q psy2427 125 AAN 127 (660)
Q Consensus 125 ~~a 127 (660)
-+|
T Consensus 103 ~vA 105 (356)
T 3s99_A 103 KVA 105 (356)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 335
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=29.30 E-value=2.2e+02 Score=29.18 Aligned_cols=92 Identities=12% Similarity=0.109 Sum_probs=53.0
Q ss_pred HHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCccc--------CC--C----HHHHHHHHHHhHh
Q psy2427 40 EVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRV--------EP--T----GDSFLEATKFVRS 105 (660)
Q Consensus 40 ~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~--------~p--~----~~~v~~~~~~~~~ 105 (660)
.|+..|++.| .++.|++.+.. .+.++..|+++..+..... .+ - ...+.+..+.+.+
T Consensus 19 ~La~~L~~~G-h~V~v~~~~~~---------~~~v~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 88 (404)
T 3h4t_A 19 ALAARLRELG-ADARMCLPPDY---------VERCAEVGVPMVPVGRAVRAGAREPGELPPGAAEVVTEVVAEWFDKVPA 88 (404)
T ss_dssp HHHHHHHHTT-CCEEEEECGGG---------HHHHHHTTCCEEECSSCSSGGGSCTTCCCTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CeEEEEeCHHH---------HHHHHHcCCceeecCCCHHHHhccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888 68888887542 2334566888765542110 00 0 1222222222221
Q ss_pred --cCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC
Q psy2427 106 --VQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS 165 (660)
Q Consensus 106 --~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~ 165 (660)
.++|+||.-|.....=.+..+|..++ +|++.+-+++
T Consensus 89 ~~~~pD~Vi~~~~~~~~~~a~~~A~~lg------------------------iP~v~~~~~p 126 (404)
T 3h4t_A 89 AIEGCDAVVTTGLLPAAVAVRSMAEKLG------------------------IPYRYTVLSP 126 (404)
T ss_dssp HHTTCSEEEEEECHHHHHHHHHHHHHHT------------------------CCEEEEESSG
T ss_pred HhcCCCEEEECCchhhhhhhhhHHhhcC------------------------CCEEEEEcCC
Confidence 47999998776444333455555554 8999887776
No 336
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=29.30 E-value=2.2e+02 Score=22.69 Aligned_cols=63 Identities=16% Similarity=0.095 Sum_probs=37.7
Q ss_pred EEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 52 RVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 52 r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
|++||-|.... ...+...|+..|..+..+. +..++.+.+++..+|+||- ..+.+-+++.+.+.
T Consensus 2 ~ilivdd~~~~----~~~l~~~l~~~g~~v~~~~---------~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~ 67 (121)
T 2pl1_A 2 RVLVVEDNALL----RHHLKVQIQDAGHQVDDAE---------DAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWR 67 (121)
T ss_dssp EEEEECSCHHH----HHHHHHHHHHTTCEEEEES---------SHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHH
T ss_pred eEEEEeCcHHH----HHHHHHHHhhcCCEEEEeC---------CHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHH
Confidence 56777665432 2456677777787755432 2334555666778898774 45555566666553
No 337
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=29.22 E-value=1.9e+02 Score=23.24 Aligned_cols=64 Identities=19% Similarity=0.152 Sum_probs=39.9
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
.|++||-|.... .+.+...|++.|+.+..+.. ..++.+.++...+|+||- +.+.+-+++.+.+.
T Consensus 3 ~~ilivdd~~~~----~~~l~~~l~~~g~~v~~~~~---------~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~ 69 (127)
T 2jba_A 3 RRILVVEDEAPI----REMVCFVLEQNGFQPVEAED---------YDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLR 69 (127)
T ss_dssp CEEEEECSCHHH----HHHHHHHHHHTTCEEEEECS---------HHHHHTTCSSSCCSEEEEESEETTEEHHHHHHHHH
T ss_pred cEEEEEcCCHHH----HHHHHHHHHHCCceEEEeCC---------HHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHH
Confidence 477887776532 25566777777877654322 344556666778898773 56666666666553
No 338
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=29.18 E-value=4e+02 Score=25.79 Aligned_cols=49 Identities=10% Similarity=0.043 Sum_probs=37.8
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
..+-+.+.+++.|+.+.++. .+.+.+.-.+.++.+...++|.||-.+..
T Consensus 21 ~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~i~~~~~~~vdgiIi~~~~ 69 (330)
T 3uug_A 21 DGNNIVKQLQEAGYKTDLQY---ADDDIPNQLSQIENMVTKGVKVLVIASID 69 (330)
T ss_dssp HHHHHHHHHHHTTCEEEEEE---CTTCHHHHHHHHHHHHHHTCSEEEECCSS
T ss_pred HHHHHHHHHHHcCCEEEEee---CCCCHHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 45668888889999988775 35566666777888888899999987654
No 339
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=29.17 E-value=46 Score=27.86 Aligned_cols=33 Identities=6% Similarity=0.066 Sum_probs=26.0
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEE
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFEL 83 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~ 83 (660)
-|++++|+.+...+-...++++.+++.|+++.+
T Consensus 5 mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i 37 (109)
T 2l2q_A 5 MNILLVCGAGMSTSMLVQRIEKYAKSKNINATI 37 (109)
T ss_dssp EEEEEESSSSCSSCHHHHHHHHHHHHHTCSEEE
T ss_pred eEEEEECCChHhHHHHHHHHHHHHHHCCCCeEE
Confidence 369999998876554568999999999987654
No 340
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=29.13 E-value=2e+02 Score=27.77 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=36.4
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
..+-+.+.+++.|+++.+++. .+.+.-.+.++.+...++|.||-.+...
T Consensus 20 ~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~i~~l~~~~vdgiii~~~~~ 68 (306)
T 8abp_A 20 EWKFADKAGKDLGFEVIKIAV----PDGEKTLNAIDSLAASGAKGFVICTPDP 68 (306)
T ss_dssp HHHHHHHHHHHHTEEEEEEEC----CSHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred HHHHHHHHHHHcCCEEEEeCC----CCHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 446677788888988876653 2566667778888888999999887544
No 341
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=29.04 E-value=1.4e+02 Score=28.84 Aligned_cols=49 Identities=12% Similarity=0.099 Sum_probs=32.4
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
..+-+.+.+++.|+.+.++..-. +.+...+..+.+...++|.||-++..
T Consensus 28 ~~~gi~~~a~~~g~~~~~~~~~~---~~~~~~~~~~~l~~~~vdgiIi~~~~ 76 (288)
T 3gv0_A 28 MVFGITEVLSTTQYHLVVTPHIH---AKDSMVPIRYILETGSADGVIISKIE 76 (288)
T ss_dssp HHHHHHHHHTTSSCEEEECCBSS---GGGTTHHHHHHHHHTCCSEEEEESCC
T ss_pred HHHHHHHHHHHcCCEEEEecCCc---chhHHHHHHHHHHcCCccEEEEecCC
Confidence 45667778888899888764321 22223455556777899999988644
No 342
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=28.78 E-value=2.5e+02 Score=23.60 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=41.2
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCC--eEEEEeCcccCCCHHHHHHHHHHhH---------hcCCCEEEE---ecC
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGV--KFELFDKVRVEPTGDSFLEATKFVR---------SVQCDAFIA---VGG 116 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi--~~~~~~~~~~~p~~~~v~~~~~~~~---------~~~~D~IIa---vGG 116 (660)
.|++||-|.... .+.+...|++.|. .+..+. +. .++.+.++ ...+|+||- +.+
T Consensus 5 ~~ILivddd~~~----~~~l~~~L~~~g~~~~v~~~~------~~---~~al~~l~~~~~~~~~~~~~~dliilD~~l~~ 71 (152)
T 3heb_A 5 VTIVMIEDDLGH----ARLIEKNIRRAGVNNEIIAFT------DG---TSALNYLFGDDKSGRVSAGRAQLVLLDLNLPD 71 (152)
T ss_dssp CEEEEECCCHHH----HHHHHHHHHHTTCCCCEEEES------SH---HHHHHHHHCTTSSSGGGTTCBEEEEECSBCSS
T ss_pred ceEEEEeCCHHH----HHHHHHHHHhCCCcceEEEeC------CH---HHHHHHHhccccccccccCCCCEEEEeCCCCC
Confidence 478888775532 2567778888887 454442 22 34444443 567888875 577
Q ss_pred chhhhHHHHHHh
Q psy2427 117 GSVIDTCKAANL 128 (660)
Q Consensus 117 GsviD~AK~~a~ 128 (660)
..-+++.+.+..
T Consensus 72 ~~g~~~~~~lr~ 83 (152)
T 3heb_A 72 MTGIDILKLVKE 83 (152)
T ss_dssp SBHHHHHHHHHH
T ss_pred CcHHHHHHHHHh
Confidence 788888887644
No 343
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=28.65 E-value=3e+02 Score=25.04 Aligned_cols=64 Identities=14% Similarity=0.051 Sum_probs=40.1
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
-|++||-|.... .+.+...|+..|+.+..+. +..++.+.++...+|+||- +.+..-+++.+.+.
T Consensus 3 ~~ilivdd~~~~----~~~l~~~L~~~g~~v~~~~---------~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~lr 69 (225)
T 1kgs_A 3 VRVLVVEDERDL----ADLITEALKKEMFTVDVCY---------DGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMR 69 (225)
T ss_dssp CEEEEECSSHHH----HHHHHHHHHHTTCEEEEES---------SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred ceEEEEeCCHHH----HHHHHHHHHHCCCEEEEEC---------CHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 377888776542 2456677777787765432 2344556667778997764 45566667666654
No 344
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=28.60 E-value=2.1e+02 Score=23.35 Aligned_cols=65 Identities=11% Similarity=0.179 Sum_probs=40.7
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCC--eEEEEeCcccCCCHHHHHHHHHHhHh-------cCCCEEEE---ecCch
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGV--KFELFDKVRVEPTGDSFLEATKFVRS-------VQCDAFIA---VGGGS 118 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi--~~~~~~~~~~~p~~~~v~~~~~~~~~-------~~~D~IIa---vGGGs 118 (660)
.|++||.|.... .+.+...|++.|. .+..+.. ..++.+.+++ ..+|+||- +.+..
T Consensus 3 ~~ilivdd~~~~----~~~l~~~L~~~~~~~~v~~~~~---------~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~ 69 (140)
T 1k68_A 3 KKIFLVEDNKAD----IRLIQEALANSTVPHEVVTVRD---------GMEAMAYLRQEGEYANASRPDLILLXLNLPKKD 69 (140)
T ss_dssp CEEEEECCCHHH----HHHHHHHHHTCSSCCEEEEECS---------HHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSC
T ss_pred CeEEEEeCCHHH----HHHHHHHHHhcCCCceEEEECC---------HHHHHHHHHcccccccCCCCcEEEEecCCCccc
Confidence 578888776532 3567788888887 5444332 3445555655 67898874 45556
Q ss_pred hhhHHHHHHh
Q psy2427 119 VIDTCKAANL 128 (660)
Q Consensus 119 viD~AK~~a~ 128 (660)
.+++.+.+..
T Consensus 70 g~~~~~~l~~ 79 (140)
T 1k68_A 70 GREVLAEIKS 79 (140)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 6677666643
No 345
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=28.59 E-value=1.9e+02 Score=27.84 Aligned_cols=67 Identities=10% Similarity=0.134 Sum_probs=43.7
Q ss_pred CEEEEEECcc--ccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 51 QRVCVMTDPH--LSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 51 ~r~liVtd~~--~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
+++.+|.... .+-....+-+.+.+++.|+.+.++.. ....+.+.-.+.++.+...++|.||-.+...
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~ 74 (304)
T 3o1i_D 6 EKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEA-GGYPNKSRQEQQLALCTQWGANAIILGTVDP 74 (304)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEEC-SSTTCHHHHHHHHHHHHHHTCSEEEECCSST
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcC-CCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh
Confidence 4565555422 11122446677788888999887653 2223667777888888888999999876543
No 346
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=28.57 E-value=12 Score=40.22 Aligned_cols=85 Identities=9% Similarity=0.003 Sum_probs=43.8
Q ss_pred HHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHh-CCCeEEEEeCcccCCCHH--HHHHHHHHhH-hcCCCEEEEec
Q psy2427 40 EVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTR-HGVKFELFDKVRVEPTGD--SFLEATKFVR-SVQCDAFIAVG 115 (660)
Q Consensus 40 ~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~-~gi~~~~~~~~~~~p~~~--~v~~~~~~~~-~~~~D~IIavG 115 (660)
.+.++++.+|.+++.+|++...+.....+.+++.+++ .|+.+.....+...++.. +....+..++ ..++|+||..|
T Consensus 176 a~~~ll~~fgw~~V~li~~d~~~G~~~~~~~~~~~~~~~Gi~va~~~~i~~~~~~~~~d~~~~l~~i~~~s~a~vIi~~~ 255 (481)
T 3mq4_A 176 AMVDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLSIAQSVRIPQERKDRTIDFDRIIKQLLDTPNSRAVVIFA 255 (481)
T ss_dssp HHHHHHHHHTCCEEEEC---CHHHHHHHHHHHHCC---CCCEECCCCCCCCC------CCSHHHHCCCCC----CEEECC
T ss_pred HHHHHHHHCCCeEEEEEEEcchhHHHHHHHHHHHHHHhCCEEEEEEEEcCCCCccchHHHHHHHHHHHhcCCCEEEEEEE
Confidence 3566777889899999987664443344666666664 577654222332232222 4555666665 46899999988
Q ss_pred CchhhhHHHHH
Q psy2427 116 GGSVIDTCKAA 126 (660)
Q Consensus 116 GGsviD~AK~~ 126 (660)
.+. |+..++
T Consensus 256 ~~~--~~~~l~ 264 (481)
T 3mq4_A 256 NDE--DIKQIL 264 (481)
T ss_dssp CSS--HHHHHC
T ss_pred ChH--HHHHHH
Confidence 653 344443
No 347
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=28.55 E-value=2.2e+02 Score=22.50 Aligned_cols=64 Identities=20% Similarity=0.149 Sum_probs=39.7
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
.|++||-|.... .+.+...|++.|+.+..+. +..++.+.++...+|+||- +.+..-+++.+.+.
T Consensus 2 ~~ilivdd~~~~----~~~l~~~l~~~~~~v~~~~---------~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~ 68 (116)
T 3a10_A 2 KRILVVDDEPNI----RELLKEELQEEGYEIDTAE---------NGEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIR 68 (116)
T ss_dssp CEEEEECSCHHH----HHHHHHHHHHTTCEEEEES---------SHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHH
T ss_pred cEEEEEeCCHHH----HHHHHHHHHHCCCEEEEeC---------CHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHH
Confidence 477777765532 2556777777787765432 1344556666778998764 45556667666554
No 348
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=28.49 E-value=1.1e+02 Score=30.92 Aligned_cols=68 Identities=15% Similarity=0.199 Sum_probs=48.1
Q ss_pred CEEEEEECcccc---ccchHHHHHHHHHhCCCeEEEEeCcc------cCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 51 QRVCVMTDPHLS---KLAPVKATLDSLTRHGVKFELFDKVR------VEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 51 ~r~liVtd~~~~---~~~~~~~i~~~L~~~gi~~~~~~~~~------~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
.++-||+-.+-. ....++..++.|++.|+++.+-..+. ...+.+.++++-+.+.+-.+|+|+++-||-
T Consensus 13 D~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGG~ 89 (327)
T 4h1h_A 13 DEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIGGF 89 (327)
T ss_dssp CEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCCCS
T ss_pred CEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCCch
Confidence 788888755321 11235777888999999987544332 234467888888888888899999997773
No 349
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=28.30 E-value=1.8e+02 Score=26.54 Aligned_cols=67 Identities=16% Similarity=0.040 Sum_probs=42.5
Q ss_pred cCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCC-C-HHHHHHHHHHhHhcCCCEEEEecC
Q psy2427 48 MKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEP-T-GDSFLEATKFVRSVQCDAFIAVGG 116 (660)
Q Consensus 48 ~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p-~-~~~v~~~~~~~~~~~~D~IIavGG 116 (660)
.+.-|+.|=+|..-.+ +-+.|++.|++.|.++.-|.-...++ + .+....+++.+.+..+|.-|.|.|
T Consensus 19 ~~~MkIaIgsDhaG~~--lK~~i~~~L~~~G~eV~D~G~~~~~~~dYPd~a~~va~~V~~g~~d~GIliCG 87 (166)
T 3s5p_A 19 PGSMKVAFASDHGGRD--LRMFLQQRASAHGYEVMDLGTESDASVDYPDFAKIGCEAVTSGRADCCILVCG 87 (166)
T ss_dssp CTTCEEEEEECGGGHH--HHHHHHHHHHHTTCEEEEEEC--------CHHHHHHHHHHHTTSCSEEEEEES
T ss_pred CCceEEEEEECchHHH--HHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCcEEEEEcC
Confidence 3434788888876554 34789999999999988765332222 2 345566677777788886555544
No 350
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=28.14 E-value=78 Score=27.59 Aligned_cols=51 Identities=10% Similarity=0.033 Sum_probs=34.6
Q ss_pred HHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCC-CEEEEecCchh
Q psy2427 68 KATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQC-DAFIAVGGGSV 119 (660)
Q Consensus 68 ~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~-D~IIavGGGsv 119 (660)
+++.+...+.+.++...+... .++...+.+..+.+++.+. |..|-+||.-+
T Consensus 44 e~~v~~a~~~~~d~v~lS~~~-~~~~~~~~~~i~~l~~~g~~~i~v~vGG~~~ 95 (137)
T 1ccw_A 44 ELFIKAAIETKADAILVSSLY-GQGEIDCKGLRQKCDEAGLEGILLYVGGNIV 95 (137)
T ss_dssp HHHHHHHHHHTCSEEEEEECS-STHHHHHTTHHHHHHHTTCTTCEEEEEESCS
T ss_pred HHHHHHHHhcCCCEEEEEecC-cCcHHHHHHHHHHHHhcCCCCCEEEEECCCc
Confidence 666667666677766554332 4567778888888888766 67777777643
No 351
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=28.13 E-value=3.3e+02 Score=26.92 Aligned_cols=49 Identities=8% Similarity=-0.128 Sum_probs=36.9
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
..+-+.+.+++.|+.+.++.. +.+.+.-.+..+.+...++|.||-++..
T Consensus 86 ~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdGiIi~~~~ 134 (344)
T 3kjx_A 86 VLTGINQVLEDTELQPVVGVT---DYLPEKEEKVLYEMLSWRPSGVIIAGLE 134 (344)
T ss_dssp HHHHHHHHHTSSSSEEEEEEC---TTCHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred HHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 456677888888998876543 4456666778888888999999988754
No 352
>2ek0_A Stage V sporulation protein S (spovs) related Pro; structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} PDB: 2eh1_A
Probab=28.12 E-value=40 Score=27.43 Aligned_cols=41 Identities=17% Similarity=0.120 Sum_probs=32.3
Q ss_pred CCCHHHH-HHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHh
Q psy2427 90 EPTGDSF-LEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYY 130 (660)
Q Consensus 90 ~p~~~~v-~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~ 130 (660)
......| -.++..+|+.+.=.|-|||.|.+--..|++|...
T Consensus 9 ~S~P~~VAGAIA~~lRe~~~veiqAIGa~AvNqAVKAIAIAR 50 (90)
T 2ek0_A 9 KSRPNSVAGAIAAMLRTKGEVEVQAIGPQAVNQAVKAIAIAR 50 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhcCCceEEEEECHHHHHHHHHHHHHHH
Confidence 4444444 5667788888888999999999999999998654
No 353
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=28.07 E-value=2.5e+02 Score=23.03 Aligned_cols=64 Identities=8% Similarity=-0.034 Sum_probs=40.6
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
-|++||.|.... .+.+...|++.+..+..+.. ..++.+.+++..+|+||. +.+...+++.+.+.
T Consensus 8 ~~ilivdd~~~~----~~~l~~~L~~~~~~v~~~~~---------~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~ 74 (137)
T 3hdg_A 8 LKILIVEDDTDA----REWLSTIISNHFPEVWSAGD---------GEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIK 74 (137)
T ss_dssp CCEEEECSCHHH----HHHHHHHHHTTCSCEEEESS---------HHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHH
T ss_pred cEEEEEeCCHHH----HHHHHHHHHhcCcEEEEECC---------HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 478888776532 25577777777766655432 345566667778998775 35566666666553
No 354
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=27.94 E-value=1.6e+02 Score=31.34 Aligned_cols=76 Identities=13% Similarity=-0.019 Sum_probs=41.6
Q ss_pred HHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCC-CeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchh
Q psy2427 41 VGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHG-VKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSV 119 (660)
Q Consensus 41 l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~g-i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 119 (660)
+..+|.++|..-+.++++.... .+.+++.+.|++.+ ....++. .++.. ++.+.+++.++|+|| ||..
T Consensus 327 l~~~L~elG~~vv~v~~~~~~~--~~~~~~~~ll~~~~~~~~~v~~----~~d~~---~l~~~i~~~~pDl~i--g~~~- 394 (458)
T 1mio_B 327 LSKFIIELGAIPKYVVTGTPGM--KFQKEIDAMLAEAGIEGSKVKV----EGDFF---DVHQWIKNEGVDLLI--SNTY- 394 (458)
T ss_dssp HHHHHHTTTCEEEEEEESSCCH--HHHHHHHHHHHTTTCCSCEEEE----SCBHH---HHHHHHHHSCCSEEE--ESGG-
T ss_pred HHHHHHHCCCEEEEEEeCCCCH--HHHHHHHHHHHhcCCCCCEEEE----CCCHH---HHHHHHHhcCCCEEE--eCcc-
Confidence 6677777786666666654322 13355555565544 3322222 23333 355566677899988 3432
Q ss_pred hhHHHHHHhHhc
Q psy2427 120 IDTCKAANLYYC 131 (660)
Q Consensus 120 iD~AK~~a~~~~ 131 (660)
.|.++...+
T Consensus 395 ---~~~~a~k~g 403 (458)
T 1mio_B 395 ---GKFIAREEN 403 (458)
T ss_dssp ---GHHHHHHHT
T ss_pred ---hHHHHHHcC
Confidence 466665554
No 355
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=27.84 E-value=1.7e+02 Score=31.03 Aligned_cols=77 Identities=14% Similarity=0.109 Sum_probs=47.0
Q ss_pred CcChHH---HHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCE
Q psy2427 34 GPGVTR---EVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDA 110 (660)
Q Consensus 34 G~g~~~---~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~ 110 (660)
|.|-.. .|...+.+.| +|+++|+....+. +..+++...-+..|+.+. ......-+.+.+.++++.++..++|+
T Consensus 110 G~GKTTt~~kLA~~l~~~G-~kVllv~~D~~R~-aa~eqL~~~~~~~gvpv~--~~~~~~dp~~i~~~al~~a~~~~~Dv 185 (443)
T 3dm5_A 110 GSGKTTTVAKLARYFQKRG-YKVGVVCSDTWRP-GAYHQLRQLLDRYHIEVF--GNPQEKDAIKLAKEGVDYFKSKGVDI 185 (443)
T ss_dssp TSSHHHHHHHHHHHHHTTT-CCEEEEECCCSST-HHHHHHHHHHGGGTCEEE--CCTTCCCHHHHHHHHHHHHHHTTCSE
T ss_pred CCCHHHHHHHHHHHHHHCC-CeEEEEeCCCcch-hHHHHHHHHHHhcCCcEE--ecCCCCCHHHHHHHHHHHHHhCCCCE
Confidence 555443 3666667767 7888777544332 344666666666677653 22222233455678888888888998
Q ss_pred EEEe
Q psy2427 111 FIAV 114 (660)
Q Consensus 111 IIav 114 (660)
||-=
T Consensus 186 VIID 189 (443)
T 3dm5_A 186 IIVD 189 (443)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8753
No 356
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=27.82 E-value=2.2e+02 Score=25.61 Aligned_cols=64 Identities=16% Similarity=0.115 Sum_probs=41.9
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccC-CC-HHHHHHHHHHhHhcCCCEEEEecC
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVE-PT-GDSFLEATKFVRSVQCDAFIAVGG 116 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~-p~-~~~v~~~~~~~~~~~~D~IIavGG 116 (660)
-++.|=+|..-.+ +-+.+.+.|++.|.++.-|.....+ .+ .+....+++.+.+..+|.-|.+.|
T Consensus 13 ~~i~igsDhaG~~--lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCG 78 (155)
T 1o1x_A 13 VKIAIASDHAAFE--LKEKVKNYLLGKGIEVEDHGTYSEESVDYPDYAKKVVQSILSNEADFGILLCG 78 (155)
T ss_dssp CEEEEEECSTTHH--HHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSCSEEEEEES
T ss_pred eeEEEeeCchHHH--HHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEcC
Confidence 3667777766444 3478999999999998866432222 23 445566667777777886555554
No 357
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=27.76 E-value=2.7e+02 Score=27.76 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=36.5
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
..+-+.+.+++.|+.+.++.. +.+.+.-.+..+.+...++|.||-++...
T Consensus 84 ~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 133 (348)
T 3bil_A 84 MVTEIQSTASKAGLATIITNS---NEDATTMSGSLEFLTSHGVDGIICVPNEE 133 (348)
T ss_dssp HHHHHHHHHHHTTCCEEEEEC---TTCHHHHHHHHHHHHHTTCSCEEECCCGG
T ss_pred HHHHHHHHHHHcCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 446677788888998887643 34556666777888888999999887543
No 358
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=27.74 E-value=2.1e+02 Score=26.56 Aligned_cols=73 Identities=12% Similarity=0.083 Sum_probs=53.1
Q ss_pred cChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEe
Q psy2427 35 PGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAV 114 (660)
Q Consensus 35 ~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIav 114 (660)
...+..|.+.+.....++++|.+...- ..+.+.+.|.+.|+.+..+.+ .-+.+.-.++.+.++....+++|+-
T Consensus 16 ~~k~~~l~~ll~~~~~~~~lVF~~~~~----~~~~l~~~L~~~~~~~~~lhg---~~~~~~r~~~~~~f~~g~~~vlvaT 88 (212)
T 3eaq_A 16 RGRLEVLSDLLYVASPDRAMVFTRTKA----ETEEIAQGLLRLGHPAQALHG---DLSQGERERVLGAFRQGEVRVLVAT 88 (212)
T ss_dssp TSHHHHHHHHHHHHCCSCEEEECSSHH----HHHHHHHHHHHHTCCEEEECS---SSCHHHHHHHHHHHHSSSCCEEEEC
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeCCHH----HHHHHHHHHHHcCCCEEEEEC---CCCHHHHHHHHHHHHCCCCeEEEec
Confidence 455667777777665578877776432 236788888888888876654 5567777888888888888899885
No 359
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=27.62 E-value=2.4e+02 Score=22.73 Aligned_cols=64 Identities=16% Similarity=0.139 Sum_probs=40.7
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
.|++||-|.... .+.+...|+..|+.+..+. +..++.+.++...+|+||- +.+.+-+++.+.+.
T Consensus 4 ~~ilivdd~~~~----~~~l~~~l~~~~~~v~~~~---------~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~ 70 (126)
T 1dbw_A 4 YTVHIVDDEEPV----RKSLAFMLTMNGFAVKMHQ---------SAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLG 70 (126)
T ss_dssp CEEEEEESSHHH----HHHHHHHHHHTTCEEEEES---------CHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHH
T ss_pred CEEEEEcCCHHH----HHHHHHHHHhCCcEEEEeC---------CHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHH
Confidence 578888876643 2456677777787655432 2345566677778897764 45666677776654
No 360
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=27.59 E-value=1.4e+02 Score=29.87 Aligned_cols=86 Identities=14% Similarity=0.059 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCCCEEEEEECccccc--cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh--cCCCEEEEe
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS--VQCDAFIAV 114 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~IIav 114 (660)
....++|.+.|.+|+.+|+++.-.. ....+-+.+.|++.|+..... ...+-+.+.-.+..+.+.+ .++|.|++.
T Consensus 168 ~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~gi~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~ 245 (349)
T 1jye_A 168 RLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAE--REGDWSAMSGFQQTMQMLNEGIVPTAMLVA 245 (349)
T ss_dssp HHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCSEE--EECCSSHHHHHHHHHHHHHTTCCCSEEEES
T ss_pred HHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHHHHHHHHcCCCcccc--ccCCCChHHHHHHHHHHHhCCCCCCEEEEC
Confidence 4456778888999999999764211 112244667788888753211 1223444444444443333 358999998
Q ss_pred cCchhhhHHHHH
Q psy2427 115 GGGSVIDTCKAA 126 (660)
Q Consensus 115 GGGsviD~AK~~ 126 (660)
....++-+.+++
T Consensus 246 nD~~A~g~~~al 257 (349)
T 1jye_A 246 NDQMALGAMRAI 257 (349)
T ss_dssp SHHHHHHHHHHH
T ss_pred ChHHHHHHHHHH
Confidence 766555554444
No 361
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=27.47 E-value=2.6e+02 Score=23.04 Aligned_cols=65 Identities=6% Similarity=-0.083 Sum_probs=40.9
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCC--eEEEEeCcccCCCHHHHHHHHHHhHh-----cCCCEEEE---ecCchhh
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGV--KFELFDKVRVEPTGDSFLEATKFVRS-----VQCDAFIA---VGGGSVI 120 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi--~~~~~~~~~~~p~~~~v~~~~~~~~~-----~~~D~IIa---vGGGsvi 120 (660)
.|++||-|.... ...+...|+..|. .+..+. + ..++.+.+++ ..+|+||- +.++..+
T Consensus 10 ~~iLivdd~~~~----~~~l~~~l~~~~~~~~v~~~~------~---~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~ 76 (146)
T 3ilh_A 10 DSVLLIDDDDIV----NFLNTTIIRMTHRVEEIQSVT------S---GNAAINKLNELYAAGRWPSIICIDINMPGINGW 76 (146)
T ss_dssp EEEEEECSCHHH----HHHHHHHHHTTCCEEEEEEES------S---HHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHH
T ss_pred ceEEEEeCCHHH----HHHHHHHHHhcCCCeeeeecC------C---HHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHH
Confidence 477777765432 2557777887777 443332 2 3444555555 67898775 5677778
Q ss_pred hHHHHHHh
Q psy2427 121 DTCKAANL 128 (660)
Q Consensus 121 D~AK~~a~ 128 (660)
++.+.+..
T Consensus 77 ~~~~~l~~ 84 (146)
T 3ilh_A 77 ELIDLFKQ 84 (146)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877754
No 362
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=27.23 E-value=2.3e+02 Score=23.27 Aligned_cols=63 Identities=16% Similarity=0.128 Sum_probs=39.1
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh-cCCCEEEE---ecCchhhhHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS-VQCDAFIA---VGGGSVIDTCKAA 126 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~D~IIa---vGGGsviD~AK~~ 126 (660)
.+++||-|.... .+.+...|++.|+.+..+. +..++.+.++. ..+|+||- +.+...+++.+.+
T Consensus 16 ~~ilivdd~~~~----~~~l~~~L~~~g~~v~~~~---------~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l 82 (138)
T 2b4a_A 16 FRVTLVEDEPSH----ATLIQYHLNQLGAEVTVHP---------SGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIV 82 (138)
T ss_dssp CEEEEECSCHHH----HHHHHHHHHHTTCEEEEES---------SHHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHH
T ss_pred CeEEEECCCHHH----HHHHHHHHHHcCCEEEEeC---------CHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 577777665532 2567777887787765443 23455666777 78998874 3454555555544
No 363
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=27.19 E-value=1.8e+02 Score=29.45 Aligned_cols=85 Identities=12% Similarity=0.121 Sum_probs=50.7
Q ss_pred eEEECcChHHH-HHHHHHhcCCCEEEEEECccccc-cc---hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhH
Q psy2427 30 TIRIGPGVTRE-VGMDMVNMKAQRVCVMTDPHLSK-LA---PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVR 104 (660)
Q Consensus 30 ~i~~G~g~~~~-l~~~l~~~g~~r~liVtd~~~~~-~~---~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~ 104 (660)
-+++|.+-+.. .-+.|.+.+.+-+.|||.+.-.. .+ ....+.+..++.|+.+...... .+ .+..+.++
T Consensus 10 ivf~Gt~~fa~~~L~~L~~~~~~v~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~~~~~---~~----~~~~~~l~ 82 (318)
T 3q0i_A 10 IVFAGTPDFAARHLAALLSSEHEIIAVYTQPERPAGRGKKLTASPVKTLALEHNVPVYQPENF---KS----DESKQQLA 82 (318)
T ss_dssp EEEECCSHHHHHHHHHHHTSSSEEEEEECCCC---------CCCHHHHHHHHTTCCEECCSCS---CS----HHHHHHHH
T ss_pred EEEEecCHHHHHHHHHHHHCCCcEEEEEcCCCCcccccccCCCCHHHHHHHHcCCCEEccCcC---CC----HHHHHHHH
Confidence 45689986432 23334444656677888432110 00 1134667777889987432221 12 25678888
Q ss_pred hcCCCEEEEecCchhhh
Q psy2427 105 SVQCDAFIAVGGGSVID 121 (660)
Q Consensus 105 ~~~~D~IIavGGGsviD 121 (660)
+.++|+||.+|=|..+-
T Consensus 83 ~~~~Dliv~~~y~~ilp 99 (318)
T 3q0i_A 83 ALNADLMVVVAYGLLLP 99 (318)
T ss_dssp TTCCSEEEESSCCSCCC
T ss_pred hcCCCEEEEeCccccCC
Confidence 99999999999987653
No 364
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=26.96 E-value=61 Score=30.95 Aligned_cols=62 Identities=15% Similarity=0.246 Sum_probs=38.6
Q ss_pred CCEEEEEECccccccchHHHHHHHHHhCCCeEE---EEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhh
Q psy2427 50 AQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE---LFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVI 120 (660)
Q Consensus 50 ~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~---~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsvi 120 (660)
.+|++++.+.... +.+.+.|++.|+++. +|.......+.+. +.+.+...++|.| .+-.++..
T Consensus 120 g~~vL~~rg~~~r-----~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~---~~~~l~~~~~d~v-~ftS~s~v 184 (240)
T 3mw8_A 120 GKQIVIVRGKGGR-----EAMADGLRLRGANVSYLEVYQRACPPLDAPA---SVSRWQSFGIDTI-VVTSGEVL 184 (240)
T ss_dssp TCEEEEEEESSSC-----CHHHHHHHHTTCEEEEEEEEEEECCCCCHHH---HHHHHHHHTCCEE-ECCSHHHH
T ss_pred CCEEEEEeCCCcH-----HHHHHHHHHCCCEEEEEEEEEeeCCCCCHHH---HHHHHHhCCCCEE-EEcCHHHH
Confidence 3789998876533 457788988998755 5555444444443 3444555678865 56555553
No 365
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=26.82 E-value=99 Score=27.27 Aligned_cols=12 Identities=42% Similarity=0.684 Sum_probs=9.7
Q ss_pred cCCCEEEEecCc
Q psy2427 106 VQCDAFIAVGGG 117 (660)
Q Consensus 106 ~~~D~IIavGGG 117 (660)
..+|++|.=||+
T Consensus 85 ~~ad~~I~~~G~ 96 (170)
T 2o6l_A 85 PKTRAFITHGGA 96 (170)
T ss_dssp TTEEEEEECCCH
T ss_pred CCcCEEEEcCCc
Confidence 578999997775
No 366
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=26.78 E-value=2.2e+02 Score=27.99 Aligned_cols=65 Identities=8% Similarity=-0.063 Sum_probs=41.1
Q ss_pred CEEEEEECcc--ccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC--CCEEEEecCch
Q psy2427 51 QRVCVMTDPH--LSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ--CDAFIAVGGGS 118 (660)
Q Consensus 51 ~r~liVtd~~--~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~--~D~IIavGGGs 118 (660)
+++.+|.... ..-....+-+.+.+++.|+.+.+++. +.+.+.-.+.++.+...+ +|.||..+...
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~---~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~ 74 (332)
T 2rjo_A 6 TTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTT---EGSSEKGIADIRALLQKTGGNLVLNVDPNDS 74 (332)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEEC---TTCHHHHHHHHHHHHHHTTTCEEEEECCSSH
T ss_pred cEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecC---CCCHHHHHHHHHHHHHCCCCCCEEEEeCCCH
Confidence 4555555421 11112446677788888999887643 344555566677777778 99999887543
No 367
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=26.68 E-value=1e+02 Score=28.26 Aligned_cols=60 Identities=17% Similarity=0.180 Sum_probs=40.8
Q ss_pred HHHHHHHH---hCCCeEEEEeCcccCCCHHHHHHHHHHhHhc-CCCEEEEecCchhh--hHHHHHHhHh
Q psy2427 68 KATLDSLT---RHGVKFELFDKVRVEPTGDSFLEATKFVRSV-QCDAFIAVGGGSVI--DTCKAANLYY 130 (660)
Q Consensus 68 ~~i~~~L~---~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~-~~D~IIavGGGsvi--D~AK~~a~~~ 130 (660)
.-+.+.|+ +.|+++ .+.-+. =+.+.+.+.++.+.+. ++|+||--||=++. |..+-+-..+
T Consensus 28 ~~l~~~l~~l~~~G~~v-~~~iv~--Dd~~~I~~~l~~~~~~~~~DlVittGG~g~g~~D~t~ea~~~~ 93 (178)
T 2pbq_A 28 KAIIDYLKDVIITPFEV-EYRVIP--DERDLIEKTLIELADEKGCSLILTTGGTGPAPRDVTPEATEAV 93 (178)
T ss_dssp HHHHHHHHHHBCSCCEE-EEEEEC--SCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEE-EEEEcC--CCHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCCchHHHHHHH
Confidence 34566565 789987 554222 2356777777776653 79999999998777 8877654444
No 368
>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
Probab=26.57 E-value=76 Score=30.38 Aligned_cols=83 Identities=14% Similarity=0.140 Sum_probs=54.1
Q ss_pred eEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCC
Q psy2427 30 TIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCD 109 (660)
Q Consensus 30 ~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D 109 (660)
.++++.+.-. ..+.+.|..--++|.|-.... ++.++.+++.++++..+. ++.+..+.+.+++.+.+.+++
T Consensus 26 ~~~i~~DgGa---~~l~~~g~~Pd~ivGDfDSi~----~~~~~~~~~~~~~i~~~p---~eKD~TD~e~Al~~a~~~g~~ 95 (222)
T 3lm8_A 26 TLWIGVDKGT---VTLLDAGIIPVEAFGDFDSIT----EQERRRIEKAAPALHVYQ---AEKDQTDLDLALDWALEKQPD 95 (222)
T ss_dssp EEEEEETHHH---HHHHHHTCCCSEEESCSTTSC----HHHHHHHHHHCTTCEEEC---CCSSSCHHHHHHHHHHHHCCS
T ss_pred CEEEEECHHH---HHHHHcCCCCcEEEeCcccCC----HHHHHHHHhcCCeEEEeC---CCCCCCHHHHHHHHHHHcCCC
Confidence 4455444322 234556766668888865432 445666776777766553 366677788888888888999
Q ss_pred EEEEecC-chhhhH
Q psy2427 110 AFIAVGG-GSVIDT 122 (660)
Q Consensus 110 ~IIavGG-GsviD~ 122 (660)
-|+.+|+ |.-+|=
T Consensus 96 ~I~i~Ga~GgR~DH 109 (222)
T 3lm8_A 96 IIQIFGITGGRADH 109 (222)
T ss_dssp EEEEESCCCSCHHH
T ss_pred EEEEEcCCCCchhH
Confidence 9998887 445554
No 369
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=26.47 E-value=2.5e+02 Score=26.53 Aligned_cols=85 Identities=8% Similarity=-0.012 Sum_probs=50.8
Q ss_pred HHHHHHHhc--CCCEEEEEECcccccc--chHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh--cCCCEEEE
Q psy2427 40 EVGMDMVNM--KAQRVCVMTDPHLSKL--APVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS--VQCDAFIA 113 (660)
Q Consensus 40 ~l~~~l~~~--g~~r~liVtd~~~~~~--~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~IIa 113 (660)
.+.++|.+. |.+|+.+|+++.-... ...+-+.+.|++.|+++... ...+-+.+...++++.+.+ .++|+|++
T Consensus 111 ~a~~~L~~~g~g~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~ai~~ 188 (271)
T 2dri_A 111 IAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLAS--QPADFDRIKGLNVMQNLLTAHPDVQAVFA 188 (271)
T ss_dssp HHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHHHHHHHTCEEEEE--EECTTCHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCccHhHHHHHHHHHHhcCCCEEEEe--cCCCCCHHHHHHHHHHHHHhCCCccEEEE
Confidence 356677766 4579999987532111 12244667788788875421 2234455555555444433 35799999
Q ss_pred ecCchhhhHHHHH
Q psy2427 114 VGGGSVIDTCKAA 126 (660)
Q Consensus 114 vGGGsviD~AK~~ 126 (660)
.....++-+.+++
T Consensus 189 ~nD~~A~g~~~al 201 (271)
T 2dri_A 189 QNDEMALGALRAL 201 (271)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 9877766665554
No 370
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=26.46 E-value=2.7e+02 Score=26.20 Aligned_cols=49 Identities=8% Similarity=-0.006 Sum_probs=35.8
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
..+-+.+.+++.|+.+.++.. +.+.+.-.+..+.+...++|.||-.+..
T Consensus 21 ~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgii~~~~~ 69 (275)
T 3d8u_A 21 FLPSFQQALNKAGYQLLLGYS---DYSIEQEEKLLSTFLESRPAGVVLFGSE 69 (275)
T ss_dssp HHHHHHHHHHHTSCEECCEEC---TTCHHHHHHHHHHHHTSCCCCEEEESSC
T ss_pred HHHHHHHHHHHCCCEEEEEcC---CCCHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 456677888888988776532 3455666677788888899999988754
No 371
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=26.46 E-value=1.9e+02 Score=29.07 Aligned_cols=83 Identities=17% Similarity=0.129 Sum_probs=50.0
Q ss_pred eEEECcChH--HHHHHHHHhcCCCEEEEEECccccc-cc---hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHh
Q psy2427 30 TIRIGPGVT--REVGMDMVNMKAQRVCVMTDPHLSK-LA---PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFV 103 (660)
Q Consensus 30 ~i~~G~g~~--~~l~~~l~~~g~~r~liVtd~~~~~-~~---~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~ 103 (660)
-+++|.+.+ ..|...+. .|.+-+.|||.+.-.. .+ ....+.+..++.|+.+.....+ .+ .+..+.+
T Consensus 6 Ivf~Gt~~fa~~~L~~L~~-~~~~i~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~~~~~---~~----~~~~~~l 77 (314)
T 1fmt_A 6 IIFAGTPDFAARHLDALLS-SGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSL---RP----QENQQLV 77 (314)
T ss_dssp EEEEECSHHHHHHHHHHHH-TTCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCS---CS----HHHHHHH
T ss_pred EEEEecCHHHHHHHHHHHH-CCCcEEEEEeCCCCccccccccCcCHHHHHHHHcCCcEEecCCC---CC----HHHHHHH
Confidence 356788863 33544444 4656667888743110 00 0134667777889987432221 12 3566778
Q ss_pred HhcCCCEEEEecCchhh
Q psy2427 104 RSVQCDAFIAVGGGSVI 120 (660)
Q Consensus 104 ~~~~~D~IIavGGGsvi 120 (660)
++.++|+||.+|=|..+
T Consensus 78 ~~~~~Dliv~~~y~~il 94 (314)
T 1fmt_A 78 AELQADVMVVVAYGLIL 94 (314)
T ss_dssp HHTTCSEEEEESCCSCC
T ss_pred HhcCCCEEEEeeccccC
Confidence 88999999999988765
No 372
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=26.43 E-value=3.4e+02 Score=24.81 Aligned_cols=64 Identities=17% Similarity=0.061 Sum_probs=40.6
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
-|++||-|.... .+.+...|+..|+.+..+. +..++.+.+++..+|+||- +.+..-+++.+.+.
T Consensus 8 ~~ilivdd~~~~----~~~l~~~L~~~g~~v~~~~---------~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~ 74 (233)
T 1ys7_A 8 PRVLVVDDDSDV----LASLERGLRLSGFEVATAV---------DGAEALRSATENRPDAIVLDINMPVLDGVSVVTALR 74 (233)
T ss_dssp CEEEEECSCHHH----HHHHHHHHHHTTCEEEEES---------SHHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHH
T ss_pred CeEEEEeCCHHH----HHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 478888776543 2456677777787765432 2344556667778998764 34556667666654
No 373
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=26.34 E-value=1.3e+02 Score=28.98 Aligned_cols=86 Identities=12% Similarity=0.047 Sum_probs=53.9
Q ss_pred HHHHHHHHh-c-CCC-----EEEEEECccccc--cchHHHHHHHHHhC-CCeEEEEeCcccCCCHHHHHHHHHHhHh--c
Q psy2427 39 REVGMDMVN-M-KAQ-----RVCVMTDPHLSK--LAPVKATLDSLTRH-GVKFELFDKVRVEPTGDSFLEATKFVRS--V 106 (660)
Q Consensus 39 ~~l~~~l~~-~-g~~-----r~liVtd~~~~~--~~~~~~i~~~L~~~-gi~~~~~~~~~~~p~~~~v~~~~~~~~~--~ 106 (660)
..+.++|.+ + |.+ |+.+|++..-.. ....+-+++.+++. |+++... ...+.+.+...+.++.+.. .
T Consensus 117 ~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~--~~~~~~~~~~~~~~~~~l~~~~ 194 (293)
T 3l6u_A 117 EQLASYIKNELIKQTGRSTGRIVEITGTANVYTTNERHRGFLKGIENEPTLSIVDS--VSGNYDPVTSERVMRQVIDSGI 194 (293)
T ss_dssp HHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHHHHHHHHHHHHHTTCTTEEEEEE--EECTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccCCCCCCceEEEEECCCCCchHHHHHHHHHHHHHhCCCcEEeee--ccCCCCHHHHHHHHHHHHHhCC
Confidence 345667776 4 767 999998754221 12335567788887 8776432 3345566666666655544 4
Q ss_pred CCCEEEEecCchhhhHHHHH
Q psy2427 107 QCDAFIAVGGGSVIDTCKAA 126 (660)
Q Consensus 107 ~~D~IIavGGGsviD~AK~~ 126 (660)
++|+|++.....++-+.+++
T Consensus 195 ~~~ai~~~~d~~a~g~~~al 214 (293)
T 3l6u_A 195 PFDAVYCHNDDIAMGVLEAL 214 (293)
T ss_dssp CCSEEEESSHHHHHHHHHHH
T ss_pred CCCEEEECCchHHHHHHHHH
Confidence 67999998777666665555
No 374
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=26.25 E-value=2e+02 Score=28.47 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=34.8
Q ss_pred hCCCeEEEEeCc--ccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHH
Q psy2427 76 RHGVKFELFDKV--RVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAAN 127 (660)
Q Consensus 76 ~~gi~~~~~~~~--~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a 127 (660)
+.|++..-..++ +.+|+...+.++.+.+++.++.+|+.==.- .-.+++.++
T Consensus 195 ~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~-~~~~~~~la 247 (286)
T 3gi1_A 195 RFGLKQLGISGISPEQEPSPRQLKEIQDFVKEYNVKTIFAEDNV-NPKIAHAIA 247 (286)
T ss_dssp HTTCEEEEEECSCC---CCHHHHHHHHHHHHHTTCCEEEECTTS-CTHHHHHHH
T ss_pred HCCCeEeeccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-ChHHHHHHH
Confidence 458876655555 568999999999999999999999875332 223445444
No 375
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=26.24 E-value=2.8e+02 Score=26.75 Aligned_cols=49 Identities=14% Similarity=0.145 Sum_probs=35.3
Q ss_pred hHHHHHHHHHhCCC---eEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEec
Q psy2427 66 PVKATLDSLTRHGV---KFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVG 115 (660)
Q Consensus 66 ~~~~i~~~L~~~gi---~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavG 115 (660)
..+-+.+.+.+.|. .+.+. -...+-+.+...+..+.+.+.++|.||.+|
T Consensus 19 i~~gi~~~l~~~gy~g~~v~l~-~~~~~~~~~~~~~~~~~l~~~~vDgII~~~ 70 (295)
T 3lft_A 19 IYKGIQDGLAEEGYKDDQVKID-FMNSEGDQSKVATMSKQLVANGNDLVVGIA 70 (295)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEE-EEECTTCHHHHHHHHHHHTTSSCSEEEEES
T ss_pred HHHHHHHHHHHcCCCCCceEEE-EecCCCCHHHHHHHHHHHHhcCCCEEEECC
Confidence 44667788888888 64431 112245567778888889999999999986
No 376
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=26.18 E-value=2.3e+02 Score=27.14 Aligned_cols=50 Identities=16% Similarity=0.118 Sum_probs=33.6
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHH---HHHHhHhcCCCEEEEecCch
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLE---ATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~---~~~~~~~~~~D~IIavGGGs 118 (660)
..+-+.+.+++.|+.+.++.. ..++ +.-.+ ..+.+...++|.||-.+...
T Consensus 26 ~~~gi~~~a~~~g~~~~~~~~-~~~~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 78 (290)
T 2rgy_A 26 ILKQTDLELRAVHRHVVVATG-CGES--TPREQALEAVRFLIGRDCDGVVVISHDL 78 (290)
T ss_dssp HHHHHHHHHHHTTCEEEEECC-CSSS--CHHHHHHHHHHHHHHTTCSEEEECCSSS
T ss_pred HHHHHHHHHHHCCCEEEEEeC-CCch--hhhhhHHHHHHHHHhcCccEEEEecCCC
Confidence 446677788888998876543 2233 23334 66677778999999887654
No 377
>3ihk_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SMR83; HET: TPP; 3.00A {Streptococcus mutans}
Probab=26.18 E-value=1.3e+02 Score=28.56 Aligned_cols=73 Identities=14% Similarity=0.078 Sum_probs=51.0
Q ss_pred HHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc-CCCEEEEecC-chhhh
Q psy2427 44 DMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV-QCDAFIAVGG-GSVID 121 (660)
Q Consensus 44 ~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~-~~D~IIavGG-GsviD 121 (660)
.+.+.|..--++|.|-.... ++.++.+++.++++..|. ++.+..+.+.+++.+.+. +++-|+-+|+ |.-+|
T Consensus 31 ~l~~~g~~Pd~ivGDfDSi~----~~~~~~~~~~~~~i~~~~---~eKD~TD~e~Al~~a~~~~~~~~I~i~Ga~GGR~D 103 (218)
T 3ihk_A 31 FLLKNQLPLDLAIGDFDSVS----AEEFKQIKAKAKKLVMAP---AEKNDTDTELALKTIFDCFGRVEIIVFGAFGGRID 103 (218)
T ss_dssp HHHHTTCCCSEEEECCTTSC----HHHHHHHHTTCSSEEECC---SSCSSCHHHHHHHHHHHHTSSCEEEEESCSSSCHH
T ss_pred HHHHcCCCCCEEEeCcccCC----HHHHHHHHhcCCeEEECC---CCCCCCHHHHHHHHHHHhCCCCEEEEECCCCCchh
Confidence 45567877778898875432 456677777787766553 467777788888888876 7888887886 44666
Q ss_pred HH
Q psy2427 122 TC 123 (660)
Q Consensus 122 ~A 123 (660)
=.
T Consensus 104 H~ 105 (218)
T 3ihk_A 104 HM 105 (218)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 378
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=26.15 E-value=1.8e+02 Score=29.20 Aligned_cols=86 Identities=6% Similarity=0.082 Sum_probs=50.5
Q ss_pred HHHHHHHHhcCCCEEEEEECc-------------------cccccchHHHHHHHHHhCCCeEE---EEeCcccCCCHHHH
Q psy2427 39 REVGMDMVNMKAQRVCVMTDP-------------------HLSKLAPVKATLDSLTRHGVKFE---LFDKVRVEPTGDSF 96 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~-------------------~~~~~~~~~~i~~~L~~~gi~~~---~~~~~~~~p~~~~v 96 (660)
..+.++|.+.|.+|+.+|+.+ ........+-+.+.|++.|+.+. ++. ....+.+..
T Consensus 178 ~~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~--~~~~~~~~~ 255 (366)
T 3h5t_A 178 APAAQALIDAGHRKIGILSIRLDRANNDGEVTRERLENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIME--CWINNRQHN 255 (366)
T ss_dssp HHHHHHHHHTTCCSEEEEEECCSSSCCCEECCHHHHHTCCCTTHHHHHHHHHHHHHHHTCCGGGSCEEE--ESSCCHHHH
T ss_pred HHHHHHHHHCCCCcEEEEecccccccccCccccccccccccchHHHHHHHHHHHHHHCCCCCCcceEEE--cCCCCHHHH
Confidence 446778888899999999821 10111123446677888887521 111 124455555
Q ss_pred HHHHHHhHh--cCCCEEEEecCchhhhHHHHH
Q psy2427 97 LEATKFVRS--VQCDAFIAVGGGSVIDTCKAA 126 (660)
Q Consensus 97 ~~~~~~~~~--~~~D~IIavGGGsviD~AK~~ 126 (660)
.++++.+.+ .++|+|++.....++-+.+++
T Consensus 256 ~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al 287 (366)
T 3h5t_A 256 FEVAKELLETHPDLTAVLCTVDALAFGVLEYL 287 (366)
T ss_dssp HHHHHHHHHHCTTCCEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcEEEECCcHHHHHHHHHH
Confidence 555554433 368999998766555555544
No 379
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=26.07 E-value=2.5e+02 Score=22.37 Aligned_cols=64 Identities=9% Similarity=0.188 Sum_probs=38.4
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
.|++||-|.... ...+...|+..|+.+..+. +. .++.+.++...+|+||- ..+.+-+++.+.+.
T Consensus 3 ~~ilivdd~~~~----~~~l~~~L~~~~~~v~~~~------~~---~~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~ 69 (122)
T 1zgz_A 3 HHIVIVEDEPVT----QARLQSYFTQEGYTVSVTA------SG---AGLREIMQNQSVDLILLDINLPDENGLMLTRALR 69 (122)
T ss_dssp CEEEEECSSHHH----HHHHHHHHHHTTCEEEEES------SH---HHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred cEEEEEECCHHH----HHHHHHHHHHCCCeEEEec------CH---HHHHHHHhcCCCCEEEEeCCCCCCChHHHHHHHH
Confidence 477777766532 2456667777787665432 22 34455566678897764 35556666666553
No 380
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=26.01 E-value=71 Score=29.00 Aligned_cols=60 Identities=15% Similarity=0.150 Sum_probs=34.4
Q ss_pred CEEEEEECccccc--cchHHHHHHHHHhCCC-eEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEec
Q psy2427 51 QRVCVMTDPHLSK--LAPVKATLDSLTRHGV-KFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVG 115 (660)
Q Consensus 51 ~r~liVtd~~~~~--~~~~~~i~~~L~~~gi-~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavG 115 (660)
-|+.||..+.-.. ...++-.++.|++.|+ .+.++. + |..-++--+++.+.+ ++|.||++|
T Consensus 18 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~~~i~v~~-V---PGafEiP~aak~la~-~yDavIaLG 80 (160)
T 2c92_A 18 VRLAIVASSWHGKICDALLDGARKVAAGCGLDDPTVVR-V---LGAIEIPVVAQELAR-NHDAVVALG 80 (160)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHHHHTTCSCCEEEE-E---SSGGGHHHHHHHHHT-SCSEEEEEE
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCceEEEE-C---CcHHHHHHHHHHHHh-cCCEEEEEe
Confidence 4777777664222 1255777888988887 344432 2 222223233333333 599999997
No 381
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=25.86 E-value=1.1e+02 Score=28.30 Aligned_cols=61 Identities=13% Similarity=0.048 Sum_probs=41.6
Q ss_pred HHHHHHHHh---CCCeEEEEeCcccCCCHHHHHHHHHHhHh-cCCCEEEEecCchhh--hHHHHHHhHh
Q psy2427 68 KATLDSLTR---HGVKFELFDKVRVEPTGDSFLEATKFVRS-VQCDAFIAVGGGSVI--DTCKAANLYY 130 (660)
Q Consensus 68 ~~i~~~L~~---~gi~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~D~IIavGGGsvi--D~AK~~a~~~ 130 (660)
.-+.+.|++ .|+++..+.-++. +.+.+.+.++.+.+ .++|+||--||=++. |..+-+-..+
T Consensus 37 ~~L~~~L~~~~~~G~~v~~~~iv~D--d~~~I~~al~~a~~~~~~DlVIttGGtg~g~~D~t~eal~~~ 103 (189)
T 1jlj_A 37 INLKDLVQDPSLLGGTISAYKIVPD--EIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEV 103 (189)
T ss_dssp HHHHHHHHCTTTTCCEEEEEEEECS--CHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCCHHHHHHHH
T ss_pred HHHHHHHhchhcCCcEEEEEEEeCC--CHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCcccHHHHHHHH
Confidence 457777877 6887765443322 35677777776654 479999999999776 7777554333
No 382
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=25.84 E-value=1.4e+02 Score=28.33 Aligned_cols=67 Identities=9% Similarity=0.127 Sum_probs=37.3
Q ss_pred HHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEe-------------CcccCC---CHHHHHHHHHHhHhc
Q psy2427 43 MDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFD-------------KVRVEP---TGDSFLEATKFVRSV 106 (660)
Q Consensus 43 ~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~-------------~~~~~p---~~~~v~~~~~~~~~~ 106 (660)
+.+...+.+|+.|++.+...+.+. ..+.|++.|+++.+.+ .++... ..+.+.+.++.+.+.
T Consensus 109 ~~a~~~~~~rigvlaT~~T~~~~~---y~~~l~~~g~~v~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~l~~~~~~l~~~ 185 (228)
T 1jfl_A 109 KKVKELGFKKAGLLATTGTIVSGV---YEKEFSKYGVEIMTPTEDEQKDVMRGIYEGVKAGNLKLGRELLLKTAKILEER 185 (228)
T ss_dssp HHHHHTTCSEEEEECCHHHHHHTH---HHHHHHHTTCEEECCCHHHHHHHHHHHHTTGGGTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCeEEEEecHHHhhhhH---HHHHHHHCCCeEEccCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHC
Confidence 334433668999998776554433 4455666788764311 111111 234555566666666
Q ss_pred CCCEEE
Q psy2427 107 QCDAFI 112 (660)
Q Consensus 107 ~~D~II 112 (660)
++|.||
T Consensus 186 g~d~ii 191 (228)
T 1jfl_A 186 GAECII 191 (228)
T ss_dssp TCSEEE
T ss_pred CcCEEE
Confidence 778665
No 383
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=25.79 E-value=30 Score=34.04 Aligned_cols=68 Identities=15% Similarity=0.156 Sum_probs=40.9
Q ss_pred cCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhh
Q psy2427 48 MKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVID 121 (660)
Q Consensus 48 ~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD 121 (660)
...+|++++.+.... +.+.+.|++.|+++..+.-++..+......++.+.+...++|.|+ +-.++...
T Consensus 139 ~~g~~vLi~rg~~~r-----~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~-ftS~s~v~ 206 (269)
T 3re1_A 139 VPGSRVLIMRGNEGR-----ELLAEQLRERGVGVDYLPLYRRYLPQHAPGTLLQRVEVERLNGLV-VSSGQGFE 206 (269)
T ss_dssp SSSCEEEEEECSSCC-----CHHHHHHHHTTCEEEEEECEEEECCCCCTTTTHHHHHHTTCCEEE-CSSHHHHT
T ss_pred CCCCEEEEEccCccH-----HHHHHHHHHCCCEEEEEeEEEEECCCCCHHHHHHHHHcCCCCEEE-EcCHHHHH
Confidence 344899999887643 457788989998866443333222222223333445556788766 76666654
No 384
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=25.77 E-value=84 Score=30.65 Aligned_cols=86 Identities=14% Similarity=0.049 Sum_probs=49.2
Q ss_pred HHHHHHHHhcCCCEEEEEECcccccc--chHHHHHHHHHhCCCeE---EEEe----CcccCCCH--HHHHHHHHHhHhcC
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKL--APVKATLDSLTRHGVKF---ELFD----KVRVEPTG--DSFLEATKFVRSVQ 107 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~--~~~~~i~~~L~~~gi~~---~~~~----~~~~~p~~--~~v~~~~~~~~~~~ 107 (660)
..+.++|.+.|.+|+.+++++.-... ...+-+++.|++.|+.+ .++. ....+... +.+.++.+ +..+
T Consensus 120 ~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~ 197 (301)
T 3miz_A 120 RDLTRYLLERGHRRIGYIRLNPILLGAELRLDAFRRTTSEFGLTENDLSISLGMDGPVGAENNYVFAAATEMLK--QDDR 197 (301)
T ss_dssp HHHHHHHHTTTCCSEEEEECCTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECEESSTTSCEECHHHHHHHHHT--STTC
T ss_pred HHHHHHHHHcCCCeEEEEecCccchhHHHHHHHHHHHHHHcCCCCCcceEEEcCCCCcCccccHHHHHHHHHHc--CCCC
Confidence 44678888899999999997642211 12344667787777642 2222 22222222 33333331 1246
Q ss_pred CCEEEEecCchhhhHHHHH
Q psy2427 108 CDAFIAVGGGSVIDTCKAA 126 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~ 126 (660)
+|+|++.....++-+.+++
T Consensus 198 ~~ai~~~~d~~A~g~~~al 216 (301)
T 3miz_A 198 PTAIMSGNDEMAIQIYIAA 216 (301)
T ss_dssp CSEEEESSHHHHHHHHHHH
T ss_pred CcEEEECCHHHHHHHHHHH
Confidence 8999998776655555444
No 385
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=25.62 E-value=1.9e+02 Score=26.03 Aligned_cols=65 Identities=20% Similarity=0.167 Sum_probs=42.2
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
.+++||-|.... .+.+...|+..|+.+..+. +..++.+.++...+|+||- +.+..-+++.+.+.
T Consensus 5 ~~ilivdd~~~~----~~~l~~~L~~~g~~v~~~~---------~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~ 71 (208)
T 1yio_A 5 PTVFVVDDDMSV----REGLRNLLRSAGFEVETFD---------CASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLT 71 (208)
T ss_dssp CEEEEECSCHHH----HHHHHHHHHTTTCEEEEES---------SHHHHHHHCCTTSCEEEEEESCCSSSCHHHHHHHHH
T ss_pred CEEEEEcCCHHH----HHHHHHHHHhCCceEEEcC---------CHHHHHHhhhccCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 578888776542 2556777877787765442 2345666677778998763 45666677777664
Q ss_pred h
Q psy2427 128 L 128 (660)
Q Consensus 128 ~ 128 (660)
.
T Consensus 72 ~ 72 (208)
T 1yio_A 72 A 72 (208)
T ss_dssp H
T ss_pred h
Confidence 3
No 386
>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.80A {Homo sapiens}
Probab=25.57 E-value=2.4e+02 Score=28.27 Aligned_cols=53 Identities=19% Similarity=0.217 Sum_probs=31.6
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS 105 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~ 105 (660)
++++|++|++=..-.. =-+-+.|...|..+.+|--...... +......+.++.
T Consensus 133 ~~vlVlcG~GNNGGDG-lv~AR~L~~~G~~V~V~~~~~~~~~-~~a~~~~~~~~~ 185 (306)
T 3d3j_A 133 PTVALLCGPHVKGAQG-ISCGRHLANHDVQVILFLPNFVKML-ESITNELSLFSK 185 (306)
T ss_dssp CEEEEEECSSHHHHHH-HHHHHHHHHTTCEEEEECCCCSSCC-HHHHHHHHHHHT
T ss_pred CeEEEEECCCCCHHHH-HHHHHHHHHCCCcEEEEEecCCCCC-HHHHHHHHHHHH
Confidence 4899999987432111 2355678888999988743332333 445555555543
No 387
>3mel_A Thiamin pyrophosphokinase family protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium; HET: TPP; 2.79A {Enterococcus faecalis}
Probab=25.56 E-value=94 Score=29.73 Aligned_cols=73 Identities=10% Similarity=-0.019 Sum_probs=49.8
Q ss_pred HHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCC-EEEEecC-chhhh
Q psy2427 44 DMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCD-AFIAVGG-GSVID 121 (660)
Q Consensus 44 ~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D-~IIavGG-GsviD 121 (660)
.+.+.|..--++|.|-..... +.++.+++.|+.+..|. ++.+..+.+.+++.+.+.+++ -|+.+|| |.-+|
T Consensus 35 ~l~~~g~~Pd~ivGDfDSi~~----~~~~~~~~~~~~~~~~~---~eKD~TD~e~Al~~~~~~~~~~~I~i~Ga~GgRlD 107 (222)
T 3mel_A 35 HLLEADLPLQLAVGDFDSLSR----EEYHFVQETTETLIQAP---AEKDDTDTQLALQEALQRFPQAEMTIIGATGGRID 107 (222)
T ss_dssp HHHTTTCCCCEEEECCTTSCT----THHHHHHHHCSSEEECC---SSCSSCHHHHHHHHHHHHCTTSEEEEECCCSSCHH
T ss_pred HHHHCCCCCCEEEeCcccCCH----HHHHHHHhcCCcEEECC---ccCCCCHHHHHHHHHHHhCCCceEEEEccCCCCHH
Confidence 456678777799998764433 34455666677776553 466677778888888888886 7777776 44666
Q ss_pred HH
Q psy2427 122 TC 123 (660)
Q Consensus 122 ~A 123 (660)
=.
T Consensus 108 H~ 109 (222)
T 3mel_A 108 HL 109 (222)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 388
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=25.34 E-value=3.9e+02 Score=25.42 Aligned_cols=73 Identities=15% Similarity=0.198 Sum_probs=46.3
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc--CCCEEEEecC
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV--QCDAFIAVGG 116 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~D~IIavGG 116 (660)
..+...+.+.|. +++++...... ..+.+.+.+++.+..+..+.. .-.+.+.+.++.+.+.+. ++|.+|---|
T Consensus 43 ~~la~~l~~~G~-~V~~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~--D~~~~~~v~~~~~~~~~~~g~id~li~nAg 116 (271)
T 4iin_A 43 AEIAKTLASMGL-KVWINYRSNAE---VADALKNELEEKGYKAAVIKF--DAASESDFIEAIQTIVQSDGGLSYLVNNAG 116 (271)
T ss_dssp HHHHHHHHHTTC-EEEEEESSCHH---HHHHHHHHHHHTTCCEEEEEC--CTTCHHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred HHHHHHHHHCCC-EEEEEeCCCHH---HHHHHHHHHHhcCCceEEEEC--CCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 456677777784 66666543322 236677777777766554422 235577888888776553 7899987766
Q ss_pred c
Q psy2427 117 G 117 (660)
Q Consensus 117 G 117 (660)
.
T Consensus 117 ~ 117 (271)
T 4iin_A 117 V 117 (271)
T ss_dssp C
T ss_pred c
Confidence 4
No 389
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=25.24 E-value=80 Score=30.30 Aligned_cols=64 Identities=19% Similarity=0.222 Sum_probs=39.9
Q ss_pred CEEEEEECcc--ccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchh
Q psy2427 51 QRVCVMTDPH--LSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSV 119 (660)
Q Consensus 51 ~r~liVtd~~--~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 119 (660)
+++.+|.... .+-....+-+.+.+++.|+.+.++..- +.+.-.+..+.+...++|.|| ++....
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~----~~~~~~~~~~~l~~~~vdgiI-~~~~~~ 71 (280)
T 3gyb_A 6 QLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVIDSL----TSQAGTDPITSALSMRPDGII-IAQDIP 71 (280)
T ss_dssp CEEEEEESCTTSGGGHHHHHHHHHHHGGGTCEEEEECSS----SSCSSSCHHHHHHTTCCSEEE-EESCC-
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEEEeCC----CchHHHHHHHHHHhCCCCEEE-ecCCCC
Confidence 4566665331 111234577788888899998876542 223334556667788999999 876543
No 390
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=25.20 E-value=1.4e+02 Score=28.93 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=34.9
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
..+-+.+.+++.|+.+.++..-. .+...+..+.+...++|.||-++...
T Consensus 28 ~~~gi~~~a~~~g~~~~~~~~~~----~~~~~~~~~~l~~~~vdGiIi~~~~~ 76 (294)
T 3qk7_A 28 MISWIGIELGKRGLDLLLIPDEP----GEKYQSLIHLVETRRVDALIVAHTQP 76 (294)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECT----TCCCHHHHHHHHHTCCSEEEECSCCS
T ss_pred HHHHHHHHHHHCCCEEEEEeCCC----hhhHHHHHHHHHcCCCCEEEEeCCCC
Confidence 45667788888999988765422 22334566777788999999987654
No 391
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=25.05 E-value=2e+02 Score=29.94 Aligned_cols=77 Identities=19% Similarity=0.120 Sum_probs=54.0
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh-cCCCEEEE-ecCch--hhhHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS-VQCDAFIA-VGGGS--VIDTCKAA 126 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~D~IIa-vGGGs--viD~AK~~ 126 (660)
.|+.+|++..- ..--..+.+...|.+..-|-++.+.++.+.+.++.+.+.+ -++|.|+. +.||. .-++|+.+
T Consensus 248 g~I~ii~Ng~G----l~~~t~D~i~~~G~~~aN~lD~gG~a~~e~~~~al~~~l~d~~v~~ilv~i~ggi~~~~~vA~~i 323 (397)
T 3ufx_B 248 GNIGIIGNGAG----LVMYTLDLVNRVGGKPANFLDIGGGAKADVVYNALKVVLKDPDVKGVFINIFGGITRADEVAKGV 323 (397)
T ss_dssp SSEEEEESSHH----HHHHHHHHHHHTTCCBSEEEECCSCCCHHHHHHHHHHHHTCTTCCEEEEEEEEEEEESHHHHHHH
T ss_pred CcEEEEecCcc----HHHHHHHHHHHcCCCcCCcEecCCCCCHHHHHHHHHHHHcCCCCCEEEEECCCCCCCHHHHHHHH
Confidence 58888888652 2233556777788776667788899999999999997765 56787764 44443 35688877
Q ss_pred HhHhc
Q psy2427 127 NLYYC 131 (660)
Q Consensus 127 a~~~~ 131 (660)
.....
T Consensus 324 ~~a~~ 328 (397)
T 3ufx_B 324 IRALE 328 (397)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 65553
No 392
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=24.90 E-value=3.2e+02 Score=26.42 Aligned_cols=75 Identities=16% Similarity=0.267 Sum_probs=49.2
Q ss_pred CceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECcc----------c-cccchHHHHHHHHHhCCCeEEEEeCcc
Q psy2427 20 KEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPH----------L-SKLAPVKATLDSLTRHGVKFELFDKVR 88 (660)
Q Consensus 20 ~~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~----------~-~~~~~~~~i~~~L~~~gi~~~~~~~~~ 88 (660)
.++++++.++. ++-+...+.....+.+|=++. + .+...+..+.+.|++.||.+.+|-
T Consensus 67 ~~lNlE~a~t~---------emi~ia~~~kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~GIrVSLFI--- 134 (243)
T 1m5w_A 67 TRMNLEMAVTE---------EMLAIAVETKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFI--- 134 (243)
T ss_dssp SEEEEEECSSH---------HHHHHHHHHCCSEEEECCCCSSCSSCCSCCCSGGGHHHHHHHHHHHHHTTCEEEEEE---
T ss_pred CCEEeccCCCH---------HHHHHHHHcCCCEEEECCCCCCCcCCCcchhHHhhHHHHHHHHHHHHHCCCEEEEEe---
Confidence 46777776543 455555555557888887532 1 122345778889999999999995
Q ss_pred cCCCHHHHHHHHHHhHhcCCCEE
Q psy2427 89 VEPTGDSFLEATKFVRSVQCDAF 111 (660)
Q Consensus 89 ~~p~~~~v~~~~~~~~~~~~D~I 111 (660)
+|+.+.++ .+.+.++|.|
T Consensus 135 -Dpd~~qi~----aA~~~GA~~I 152 (243)
T 1m5w_A 135 -DADEEQIK----AAAEVGAPFI 152 (243)
T ss_dssp -CSCHHHHH----HHHHTTCSEE
T ss_pred -CCCHHHHH----HHHHhCcCEE
Confidence 46666654 4555677765
No 393
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=24.84 E-value=69 Score=26.76 Aligned_cols=65 Identities=8% Similarity=-0.110 Sum_probs=41.7
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCC-CeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHG-VKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAA 126 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~g-i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~ 126 (660)
.|++||-|.... .+.+...|++.| +++..+... .++.+.+++..+|+||- +.+.+-+++.+.+
T Consensus 15 ~~ilivdd~~~~----~~~l~~~L~~~g~~~v~~~~~~---------~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l 81 (135)
T 3snk_A 15 KQVALFSSDPNF----KRDVATRLDALAIYDVRVSETD---------DFLKGPPADTRPGIVILDLGGGDLLGKPGIVEA 81 (135)
T ss_dssp EEEEEECSCHHH----HHHHHHHHHHTSSEEEEEECGG---------GGGGCCCTTCCCSEEEEEEETTGGGGSTTHHHH
T ss_pred cEEEEEcCCHHH----HHHHHHHHhhcCCeEEEEeccH---------HHHHHHHhccCCCEEEEeCCCCCchHHHHHHHH
Confidence 578888775532 256777888888 776655432 23455556778897764 4566777777766
Q ss_pred Hh
Q psy2427 127 NL 128 (660)
Q Consensus 127 a~ 128 (660)
..
T Consensus 82 ~~ 83 (135)
T 3snk_A 82 RA 83 (135)
T ss_dssp HG
T ss_pred Hh
Confidence 43
No 394
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=24.82 E-value=85 Score=30.58 Aligned_cols=83 Identities=11% Similarity=0.041 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEE----eCccc----CCCHHHHHHHHHHhHhcCCC
Q psy2427 38 TREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELF----DKVRV----EPTGDSFLEATKFVRSVQCD 109 (660)
Q Consensus 38 ~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~----~~~~~----~p~~~~v~~~~~~~~~~~~D 109 (660)
+.+.-+.++++| .++.|...+...- +.+...+.. +++..+ .++.+ ..+.+.+.++.+...+.+.+
T Consensus 123 ~~~~i~~ir~~G-~k~Gvalnp~Tp~----e~l~~~l~~--vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~ 195 (246)
T 3inp_A 123 IDRSLQLIKSFG-IQAGLALNPATGI----DCLKYVESN--IDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRD 195 (246)
T ss_dssp HHHHHHHHHTTT-SEEEEEECTTCCS----GGGTTTGGG--CSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHcC-CeEEEEecCCCCH----HHHHHHHhc--CCEEEEeeecCCCCCcccchHHHHHHHHHHHHHHhcCCC
Confidence 455666778888 5777777665321 234444443 344432 23333 23367778877777778889
Q ss_pred EEEEecCchhhhHHHHHH
Q psy2427 110 AFIAVGGGSVIDTCKAAN 127 (660)
Q Consensus 110 ~IIavGGGsviD~AK~~a 127 (660)
+.|.|.||.-.+.++.+.
T Consensus 196 ~~I~VDGGI~~~ti~~~~ 213 (246)
T 3inp_A 196 ILLEIDGGVNPYNIAEIA 213 (246)
T ss_dssp CEEEEESSCCTTTHHHHH
T ss_pred eeEEEECCcCHHHHHHHH
Confidence 999999999999888664
No 395
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=24.81 E-value=4.8e+02 Score=25.23 Aligned_cols=76 Identities=21% Similarity=0.236 Sum_probs=48.4
Q ss_pred CCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccC-CCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHH
Q psy2427 49 KAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVE-PTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAAN 127 (660)
Q Consensus 49 g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~-p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a 127 (660)
+.+|+.+|++..... ...-..+.+++.|.. .+....... .+.+.-.++++.+.+.++|+|++.-+...+-+-+++.
T Consensus 125 ~~~~Ig~i~g~~~~~--r~~Gf~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~~D~~a~Gv~~a~~ 201 (296)
T 2hqb_A 125 ETHKVGVIAAFPWQP--EVEGFVDGAKYMNES-EAFVRYVGEWTDADKALELFQELQKEQVDVFYPAGDGYHVPVVEAIK 201 (296)
T ss_dssp SSSEEEEEESCTTCH--HHHHHHHHHHHTTCC-EEEEEECSSSSCHHHHHHHHHHHHTTTCCEEECCCTTTHHHHHHHHH
T ss_pred cCCeEEEEcCcCchh--hHHHHHHHHHHhCCC-eEEEEeeccccCHHHHHHHHHHHHHCCCcEEEECCCCCCHHHHHHHH
Confidence 558999998864321 335566778877775 321111222 2455556666666667899999999988777666553
No 396
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=24.81 E-value=1.4e+02 Score=28.41 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=47.5
Q ss_pred EECcChHHH-HHHHHHh--cCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCC
Q psy2427 32 RIGPGVTRE-VGMDMVN--MKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQC 108 (660)
Q Consensus 32 ~~G~g~~~~-l~~~l~~--~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~ 108 (660)
+.|.|.--+ +-+.+.. ++.+-++||+++.-.. .++..++.|+.+.+++... ..+ .++.+.+++.++
T Consensus 15 ~SG~gsnl~all~~~~~~~~~~~I~~Vis~~~~a~------~l~~A~~~gIp~~~~~~~~-~~~----~~~~~~L~~~~~ 83 (215)
T 3kcq_A 15 ISGRGSNLEALAKAFSTEESSVVISCVISNNAEAR------GLLIAQSYGIPTFVVKRKP-LDI----EHISTVLREHDV 83 (215)
T ss_dssp ESSCCHHHHHHHHHTCCC-CSEEEEEEEESCTTCT------HHHHHHHTTCCEEECCBTT-BCH----HHHHHHHHHTTC
T ss_pred EECCcHHHHHHHHHHHcCCCCcEEEEEEeCCcchH------HHHHHHHcCCCEEEeCccc-CCh----HHHHHHHHHhCC
Confidence 356665432 3333332 1234577788753211 1344566799987654211 111 677888899999
Q ss_pred CEEEEecCchhhh
Q psy2427 109 DAFIAVGGGSVID 121 (660)
Q Consensus 109 D~IIavGGGsviD 121 (660)
|+||.+|=|.++.
T Consensus 84 Dlivlagy~~IL~ 96 (215)
T 3kcq_A 84 DLVCLAGFMSILP 96 (215)
T ss_dssp SEEEESSCCSCCC
T ss_pred CEEEEeCCceEeC
Confidence 9999999987764
No 397
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=24.71 E-value=1.8e+02 Score=28.84 Aligned_cols=54 Identities=6% Similarity=-0.041 Sum_probs=38.5
Q ss_pred hCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHh
Q psy2427 76 RHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYY 130 (660)
Q Consensus 76 ~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~ 130 (660)
+.|++..-..+.+.+|+...+.++.+.+++.++.+|+.=-. ..-.+++.+|--.
T Consensus 206 ~yGl~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~-~~~~~~~~ia~~~ 259 (291)
T 1pq4_A 206 DYNLVQIPIEVEGQEPSAQELKQLIDTAKENNLTMVFGETQ-FSTKSSEAIAAEI 259 (291)
T ss_dssp HTTCEEEESCBTTBCCCHHHHHHHHHHHHTTTCCEEEEETT-SCCHHHHHHHHHH
T ss_pred HCCCEEeecccCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC-CChHHHHHHHHHc
Confidence 44887654455678999999999999999999999987432 2233555554433
No 398
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=24.70 E-value=2.8e+02 Score=28.30 Aligned_cols=65 Identities=15% Similarity=0.162 Sum_probs=45.0
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
+|++||-|.... ...+...|++.|..+..+. +..++.+.+++..+|+||- +.|.+-+++.+.+.
T Consensus 1 ~~ILiVDDd~~~----~~~l~~~L~~~g~~v~~a~---------~~~eal~~l~~~~~DlvllDi~mP~~dG~ell~~lr 67 (368)
T 3dzd_A 1 KRVLVVDDEESI----TSSLSAILEEEGYHPDTAK---------TLREAEKKIKELFFPVIVLDVWMPDGDGVNFIDFIK 67 (368)
T ss_dssp CEEEEECSCHHH----HHHHHHHHHHTTCEEEEES---------SHHHHHHHHHHBCCSEEEEESEETTEETTTHHHHHH
T ss_pred CEEEEEeCCHHH----HHHHHHHHHHcCCEEEEEC---------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 478888776542 2557777888888765432 2345667777889998875 67777788888765
Q ss_pred h
Q psy2427 128 L 128 (660)
Q Consensus 128 ~ 128 (660)
.
T Consensus 68 ~ 68 (368)
T 3dzd_A 68 E 68 (368)
T ss_dssp H
T ss_pred h
Confidence 3
No 399
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=24.53 E-value=3.6e+02 Score=24.57 Aligned_cols=64 Identities=17% Similarity=0.144 Sum_probs=34.0
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
.|++||.|.... .+.+...|+..|+.+..+.. ..++.+.++...+|+||- +.+..-+++.+.+.
T Consensus 5 ~~ilivdd~~~~----~~~l~~~L~~~g~~v~~~~~---------~~~al~~~~~~~~dlvllD~~l~~~~g~~~~~~l~ 71 (230)
T 2oqr_A 5 TSVLIVEDEESL----ADPLAFLLRKEGFEATVVTD---------GPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLR 71 (230)
T ss_dssp CEEEEECSCHHH----HHHHHHHHHHTTCEEEEECS---------HHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHH
T ss_pred CeEEEEeCCHHH----HHHHHHHHHHCCCEEEEECC---------HHHHHHHHhccCCCEEEEECCCCCCCHHHHHHHHH
Confidence 366776665432 24455566666666543321 233445555566776653 34455556665554
No 400
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=24.50 E-value=1.8e+02 Score=28.91 Aligned_cols=88 Identities=8% Similarity=0.027 Sum_probs=52.6
Q ss_pred HHHHHHHHhcC------C-CEEEEEECccccc--cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc--C
Q psy2427 39 REVGMDMVNMK------A-QRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV--Q 107 (660)
Q Consensus 39 ~~l~~~l~~~g------~-~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~--~ 107 (660)
..+.++|.+.| . ++++++++..... ....+-+.+.|++.+. ......+..+.+.+...+.++.+... +
T Consensus 127 ~~a~~~L~~~g~~~~~g~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 205 (350)
T 3h75_A 127 YRMLKELLHKLGPVPAGHGIELLAFSGLKVTPAAQLRERGLRRALAEHPQ-VHLRQLVYGEWNRERAYRQAQQLLKRYPK 205 (350)
T ss_dssp HHHHHHHHHHHCCCCSSCCEEEEEEESCTTSHHHHHHHHHHHHHHHHCTT-EEEEEEEECTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhhhhcCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHCCC-eEEEEEeeCCCcHHHHHHHHHHHHHhCCC
Confidence 34566776665 4 7899998764211 1123557778888886 22222234456666666665555433 4
Q ss_pred CCEEEEecCchhhhHHHHHH
Q psy2427 108 CDAFIAVGGGSVIDTCKAAN 127 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~a 127 (660)
+|+|++.....++-+.+++.
T Consensus 206 ~~aI~~~~d~~a~g~~~al~ 225 (350)
T 3h75_A 206 TQLVWSANDEMALGAMQAAR 225 (350)
T ss_dssp EEEEEESSHHHHHHHHHHHH
T ss_pred cCEEEECChHHHHHHHHHHH
Confidence 68999987766666555553
No 401
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=24.48 E-value=51 Score=29.75 Aligned_cols=61 Identities=23% Similarity=0.296 Sum_probs=35.8
Q ss_pred CEEEEEECccccc--cchHHHHHHHHHhCCCe---EEEEeCcccCCCHHHHHHH-HHHhHhcCCCEEEEec
Q psy2427 51 QRVCVMTDPHLSK--LAPVKATLDSLTRHGVK---FELFDKVRVEPTGDSFLEA-TKFVRSVQCDAFIAVG 115 (660)
Q Consensus 51 ~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~---~~~~~~~~~~p~~~~v~~~-~~~~~~~~~D~IIavG 115 (660)
.|+.||..+.-.. ...++-.++.|++.|+. +.++. + |..-++--+ -+.++..++|.||++|
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~-V---PGafEiP~aa~~la~~~~yDavIaLG 79 (154)
T 1rvv_A 13 LKIGIVVGRFNDFITSKLLSGAEDALLRHGVDTNDIDVAW-V---PGAFEIPFAAKKMAETKKYDAIITLG 79 (154)
T ss_dssp CCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEE-E---SSGGGHHHHHHHHHHTSCCSEEEEEE
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEE-C---CcHHHHHHHHHHHHhcCCCCEEEEee
Confidence 4677777664222 12557778889888863 34442 1 222223223 3344567899999997
No 402
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=24.44 E-value=2.7e+02 Score=26.55 Aligned_cols=48 Identities=10% Similarity=0.036 Sum_probs=33.1
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG 116 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG 116 (660)
..+-+.+.+++.|+.+.+++. +.+.+.-.+.++.+...++|.||-.+.
T Consensus 19 ~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (283)
T 2ioy_A 19 LKNGAEEKAKELGYKIIVEDS---QNDSSKELSNVEDLIQQKVDVLLINPV 66 (283)
T ss_dssp HHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred HHHHHHHHHHhcCcEEEEecC---CCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 446667778888998877642 334455556667777889999997654
No 403
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=24.38 E-value=3.7e+02 Score=23.99 Aligned_cols=64 Identities=19% Similarity=0.133 Sum_probs=40.6
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEE-EEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE-LFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAA 126 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~-~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~ 126 (660)
.|++||-|.... .+.+...|+..|+.+. .+. +..++.+.++...+|+||. +.|..-+++.+.+
T Consensus 14 ~~iLivdd~~~~----~~~l~~~L~~~g~~v~~~~~---------~~~~al~~~~~~~~dlvi~D~~~p~~~g~~~~~~l 80 (205)
T 1s8n_A 14 RRVLIAEDEALI----RMDLAEMLREEGYEIVGEAG---------DGQEAVELAELHKPDLVIMDVKMPRRDGIDAASEI 80 (205)
T ss_dssp CEEEEECSSHHH----HHHHHHHHHHTTCEEEEEES---------SHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHH
T ss_pred ccEEEEECCHHH----HHHHHHHHHHCCCEEEEEeC---------CHHHHHHHHhhcCCCEEEEeCCCCCCChHHHHHHH
Confidence 488888776542 2556777777788765 332 2344556666778998774 3555666766655
Q ss_pred H
Q psy2427 127 N 127 (660)
Q Consensus 127 a 127 (660)
.
T Consensus 81 ~ 81 (205)
T 1s8n_A 81 A 81 (205)
T ss_dssp H
T ss_pred H
Confidence 3
No 404
>3g23_A Peptidase U61, LD-carboxypeptidase A; flavodoxin-like fold, catalytic triad, merops S66 unassigned peptidases family; HET: MSE; 1.89A {Novosphingobium aromaticivorans}
Probab=24.38 E-value=1.1e+02 Score=30.30 Aligned_cols=68 Identities=7% Similarity=0.060 Sum_probs=46.3
Q ss_pred CEEEEEECccccccchHHHHHHHHHh--CCCeEEEEeCcc------cCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTR--HGVKFELFDKVR------VEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~--~gi~~~~~~~~~------~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
+++-||+-.+.......++..+.|+. .|+++.+...+. ...+.+.++++.+.+.+-.+|+|+++-||-
T Consensus 4 ~~I~ivaPSs~~~~~~~~~~~~~l~~~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGGy 79 (274)
T 3g23_A 4 RRIAICAPSTPFTREDSARVIALAAAEFPDLSLSFHEQCFASEGHFAGSDALRLSAFLECANDDAFEAVWFVRGGY 79 (274)
T ss_dssp EEEEEECSSSCCCHHHHHHHHHHHHHHCTTEEEEECGGGGCCSSSSSSCHHHHHHHHHHHHTCTTCSEEEESCCSS
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHhccCCeEEEECcchhhccCccCCCHHHHHHHHHHHhhCCCCCEEEEeeccc
Confidence 67777775543222234566667776 488887644332 345577888888888888999999998884
No 405
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=24.31 E-value=64 Score=32.80 Aligned_cols=71 Identities=8% Similarity=0.047 Sum_probs=45.5
Q ss_pred HHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC-----CCEEEEe
Q psy2427 41 VGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ-----CDAFIAV 114 (660)
Q Consensus 41 l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~-----~D~IIav 114 (660)
+...++..| +|+.+|++...+.....+.+.+.+++.|+++.....+... ..+....+..++..+ +|+|+..
T Consensus 133 ~~~~~~~~~-~~v~ii~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~--~~d~~~~l~~i~~~~~~~~~~d~v~~~ 208 (374)
T 3n0x_A 133 NAVAIGKQG-VTIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPTT--TTDFTAVGQRLFDALKDKPGKKIIWVI 208 (374)
T ss_dssp HHHHHCCTT-EEEEEEEESSHHHHHHHHHHHHHHTTTTCEEEEEEEECTT--CCCCHHHHHHHHHHHTTCSSEEEEEEC
T ss_pred HHHHHhccC-CEEEEEeCCchHHHHHHHHHHHHHHHcCCEEeeeecCCCC--CccHHHHHHHHHhcCCCCCCCCEEEEE
Confidence 344455566 6898888766555556688999999999987643323222 223444556666666 8988876
No 406
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=24.21 E-value=3.7e+02 Score=24.07 Aligned_cols=69 Identities=14% Similarity=0.169 Sum_probs=37.1
Q ss_pred CEEEEEECccc--cc-cchHHHHHHHHHhCCCeEEEEeCcccC-CCHHHH-HHHHHHhHhcCCCEEEEecC---chhhhH
Q psy2427 51 QRVCVMTDPHL--SK-LAPVKATLDSLTRHGVKFELFDKVRVE-PTGDSF-LEATKFVRSVQCDAFIAVGG---GSVIDT 122 (660)
Q Consensus 51 ~r~liVtd~~~--~~-~~~~~~i~~~L~~~gi~~~~~~~~~~~-p~~~~v-~~~~~~~~~~~~D~IIavGG---GsviD~ 122 (660)
++.+...++-. .+ ....+++.+.|++.|.++. +. ...+ +....+ +.-.+.++ ++|+|||+=- |...|.
T Consensus 10 ~~~~y~a~~~F~~~e~~~~~~~l~~~l~~~G~~v~-~P-~~~~~~~~~~i~~~d~~~i~--~aD~vVA~ldpf~g~~~D~ 85 (161)
T 2f62_A 10 RKIYIAGPAVFNPDMGASYYNKVRELLKKENVMPL-IP-TDNEATEALDIRQKNIQMIK--DCDAVIADLSPFRGHEPDC 85 (161)
T ss_dssp CEEEEESGGGGSTTTTHHHHHHHHHHHHTTTCEEE-CT-TTTCCSSHHHHHHHHHHHHH--HCSEEEEECCCCSSSSCCH
T ss_pred hceEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEE-CC-CccCcchHHHHHHHHHHHHH--hCCEEEEEecCCCCCCCCC
Confidence 45555555432 22 2356889999999887643 22 2212 222222 22233444 6899999943 444555
Q ss_pred H
Q psy2427 123 C 123 (660)
Q Consensus 123 A 123 (660)
+
T Consensus 86 G 86 (161)
T 2f62_A 86 G 86 (161)
T ss_dssp H
T ss_pred c
Confidence 4
No 407
>3gbc_A Pyrazinamidase/nicotinamidas PNCA; nicotinamidase - pyrazinamidase, resistance to pyrazinamide, hydrolase; 2.20A {Mycobacterium tuberculosis} PDB: 3pl1_A
Probab=24.19 E-value=2.8e+02 Score=25.24 Aligned_cols=68 Identities=12% Similarity=0.106 Sum_probs=45.2
Q ss_pred HHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCE
Q psy2427 40 EVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDA 110 (660)
Q Consensus 40 ~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~ 110 (660)
.|.+.|++.|.++++|+.-.. +......+++.+ +.|+++.+..+.-...+.+.-+.+++.++..++..
T Consensus 115 ~L~~~L~~~gi~~lvv~G~~t--~~CV~~Ta~da~-~~G~~v~v~~Da~~~~~~~~~~~al~~m~~~G~~i 182 (186)
T 3gbc_A 115 PLLNWLRQRGVDEVDVVGIAT--DHCVRQTAEDAV-RNGLATRVLVDLTAGVSADTTVAALEEMRTASVEL 182 (186)
T ss_dssp BHHHHHHHTTCCEEEEEEECT--TTHHHHHHHHHH-HTTCEEEEEEEEEECSCHHHHHHHHHHHHHTTCEE
T ss_pred cHHHHHHhcCCCEEEEEEecc--cHHHHHHHHHHH-HCCCeEEEEhhhcCCCCHHHHHHHHHHHHHcCCEE
Confidence 578888888876766654322 112224444444 46888887777666677788888888888877643
No 408
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=24.19 E-value=2.5e+02 Score=27.65 Aligned_cols=49 Identities=18% Similarity=0.128 Sum_probs=34.8
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
..+-+.+.+++.|+.+.++.. +.+.+.-.+..+.+...++|.||-.+..
T Consensus 78 ~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 126 (332)
T 2hsg_A 78 LARGIEDIATMYKYNIILSNS---DQNQDKELHLLNNMLGKQVDGIIFMSGN 126 (332)
T ss_dssp HHHHHHHHHHHHTCEEEEEEC---CSHHHHHHHHHHHTSCCSSCCEEECCSS
T ss_pred HHHHHHHHHHHcCCEEEEEeC---CCChHHHHHHHHHHHhCCCcEEEEecCC
Confidence 446677778888998877642 3344555667777778899999988754
No 409
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=24.18 E-value=2.2e+02 Score=28.27 Aligned_cols=47 Identities=13% Similarity=0.102 Sum_probs=36.0
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG 116 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG 116 (660)
..+-+.+.+++.|+.+.++.. +. .+.-.+..+.+...++|.||-.+.
T Consensus 82 ~~~gi~~~a~~~g~~~~~~~~---~~-~~~~~~~~~~l~~~~vdGiIi~~~ 128 (333)
T 3jvd_A 82 SLQTIQQDLKAAGYQMLVAEA---NS-VQAQDVVMESLISIQAAGIIHVPV 128 (333)
T ss_dssp HHHHHHHHHHHHTCEEEEEEC---CS-HHHHHHHHHHHHHHTCSEEEECCC
T ss_pred HHHHHHHHHHHCCCEEEEECC---CC-hHHHHHHHHHHHhCCCCEEEEcch
Confidence 456677888888999887653 22 566677888888889999998876
No 410
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=24.16 E-value=1.1e+02 Score=34.83 Aligned_cols=36 Identities=11% Similarity=0.162 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHH
Q psy2427 92 TGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAAN 127 (660)
Q Consensus 92 ~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a 127 (660)
+.+...++++.++++++|.+|.|||--.++.|..++
T Consensus 94 ~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~gA~~l~ 129 (762)
T 3o8l_A 94 EREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFR 129 (762)
T ss_dssp SHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHH
Confidence 356788999999999999999999988888887654
No 411
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=24.04 E-value=4.5e+02 Score=26.01 Aligned_cols=25 Identities=12% Similarity=0.212 Sum_probs=19.3
Q ss_pred HHHHHHHHhHhcCCCEEEEecCchh
Q psy2427 95 SFLEATKFVRSVQCDAFIAVGGGSV 119 (660)
Q Consensus 95 ~v~~~~~~~~~~~~D~IIavGGGsv 119 (660)
.+.++.+.+++.++|+|++.|+...
T Consensus 79 ~~~~l~~~l~~~~pDvv~~~~~~~~ 103 (376)
T 1v4v_A 79 ILPQAARALKEMGADYVLVHGDTLT 103 (376)
T ss_dssp HHHHHHHHHHHTTCSEEEEESSCHH
T ss_pred HHHHHHHHHHHcCCCEEEEeCChHH
Confidence 3456777888899999999987543
No 412
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=23.93 E-value=3e+02 Score=26.38 Aligned_cols=69 Identities=14% Similarity=0.135 Sum_probs=45.5
Q ss_pred HHhcCCCEEEEEECcc---ccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC
Q psy2427 45 MVNMKAQRVCVMTDPH---LSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG 116 (660)
Q Consensus 45 l~~~g~~r~liVtd~~---~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG 116 (660)
|+.-..+++.+|.... .+.....+-+.+.+++.|+.+.++.. +.+.+.-.+..+.+...++|.||-++.
T Consensus 8 L~~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdGiIi~~~ 79 (301)
T 3miz_A 8 IRSSRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANT---GGSSEREVEIWKMFQSHRIDGVLYVTM 79 (301)
T ss_dssp ----CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred HhhCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHhCCCCEEEEecC
Confidence 3333335666665432 22213567888899999999887653 455667778888888899999998764
No 413
>3k94_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.10A {Geobacillus thermodenitrificans}
Probab=23.92 E-value=69 Score=30.73 Aligned_cols=71 Identities=11% Similarity=0.118 Sum_probs=49.2
Q ss_pred HHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhH
Q psy2427 45 MVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDT 122 (660)
Q Consensus 45 l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~ 122 (660)
+.+.|..--++|.|-.... ++.++.+++.++++..|. ++.+..+.+.+++.+.+.+++-|+.+|+ |.-+|=
T Consensus 37 l~~~g~~Pd~ivGD~DSi~----~~~~~~~~~~~~~i~~~p---~eKD~TD~e~Al~~a~~~g~~~I~i~Ga~GGR~DH 108 (223)
T 3k94_A 37 LLEAGFRPVRAFGDFDSLP----AEDVVKLQQAFPDLDVWP---AEKDKTDMEIALDWAVEQTARCIRLFGATGGRLDH 108 (223)
T ss_dssp HHHHTCCCSEEESCGGGSC----HHHHHHHHHHCTTCCEEC---CBTTBCHHHHHHHHHHTTCCSEEEEESCSSSSHHH
T ss_pred HHHcCCCCCEEEeCcccCC----HHHHHHHHhcCCeEEECC---CcCCCCHHHHHHHHHHHcCCCEEEEEcCCCCchhH
Confidence 4445766668888865432 455666766676655543 3667778888899999999999998887 445664
No 414
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=23.89 E-value=4.6e+02 Score=26.64 Aligned_cols=80 Identities=14% Similarity=0.077 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCccc-C--------CC------------HHHHH
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRV-E--------PT------------GDSFL 97 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~-~--------p~------------~~~v~ 97 (660)
-.|.+.|.+.| .++.+++..... +.+.+.|+.+..+....+ . .. ...+.
T Consensus 25 ~~la~~L~~~G-~~V~~~~~~~~~---------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (430)
T 2iyf_A 25 LEVIRELVARG-HRVTYAIPPVFA---------DKVAATGPRPVLYHSTLPGPDADPEAWGSTLLDNVEPFLNDAIQALP 94 (430)
T ss_dssp HHHHHHHHHTT-CEEEEEECGGGH---------HHHHTTSCEEEECCCCSCCTTSCGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CeEEEEeCHHHH---------HHHHhCCCEEEEcCCcCccccccccccchhhHHHHHHHHHHHHHHHH
Confidence 34777788878 688888876521 234456887765443210 0 11 12234
Q ss_pred HHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhc
Q psy2427 98 EATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYC 131 (660)
Q Consensus 98 ~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~ 131 (660)
++.+.+++.++|+||+=..+. .+..+|..++
T Consensus 95 ~l~~~l~~~~pD~Vi~d~~~~---~~~~~A~~~g 125 (430)
T 2iyf_A 95 QLADAYADDIPDLVLHDITSY---PARVLARRWG 125 (430)
T ss_dssp HHHHHHTTSCCSEEEEETTCH---HHHHHHHHHT
T ss_pred HHHHHhhccCCCEEEECCccH---HHHHHHHHcC
Confidence 556667778999999854332 3444444443
No 415
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=23.79 E-value=3.6e+02 Score=23.97 Aligned_cols=87 Identities=14% Similarity=0.031 Sum_probs=48.5
Q ss_pred ChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEe-
Q psy2427 36 GVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAV- 114 (660)
Q Consensus 36 g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIav- 114 (660)
..++++.+.+.+. +|++++.-..... ....+...|...|+.+..+.. +..........+. .-|++|++
T Consensus 27 ~~l~~~~~~i~~a--~~I~i~G~G~S~~--~a~~~~~~l~~~g~~~~~~~~-----~~~~~~~~~~~~~--~~d~~i~iS 95 (187)
T 3sho_A 27 EAIEAAVEAICRA--DHVIVVGMGFSAA--VAVFLGHGLNSLGIRTTVLTE-----GGSTLTITLANLR--PTDLMIGVS 95 (187)
T ss_dssp HHHHHHHHHHHHC--SEEEEECCGGGHH--HHHHHHHHHHHTTCCEEEECC-----CTHHHHHHHHTCC--TTEEEEEEC
T ss_pred HHHHHHHHHHHhC--CEEEEEecCchHH--HHHHHHHHHHhcCCCEEEecC-----CchhHHHHHhcCC--CCCEEEEEe
Confidence 3456666666653 6887777655432 336677777778888776541 1222222222222 22677776
Q ss_pred cCchhhhHHHHHHhHhcCC
Q psy2427 115 GGGSVIDTCKAANLYYCDP 133 (660)
Q Consensus 115 GGGsviD~AK~~a~~~~~~ 133 (660)
-.|..-++-+++-....+|
T Consensus 96 ~sG~t~~~~~~~~~ak~~g 114 (187)
T 3sho_A 96 VWRYLRDTVAALAGAAERG 114 (187)
T ss_dssp CSSCCHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHCC
Confidence 3456666666665444443
No 416
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=23.79 E-value=3.6e+02 Score=26.66 Aligned_cols=88 Identities=14% Similarity=0.205 Sum_probs=50.9
Q ss_pred EEECc-ChHHH-HHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCC
Q psy2427 31 IRIGP-GVTRE-VGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQC 108 (660)
Q Consensus 31 i~~G~-g~~~~-l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~ 108 (660)
++.|. |.+-+ +.+.|.+.| .++.+++-........ .+..+.+...++++...+ + .+.+.+ .+.+++.++
T Consensus 14 lVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~~~~-~~~~~~l~~~~v~~~~~D-l---~d~~~l---~~~~~~~~~ 84 (346)
T 3i6i_A 14 LIAGATGFIGQFVATASLDAH-RPTYILARPGPRSPSK-AKIFKALEDKGAIIVYGL-I---NEQEAM---EKILKEHEI 84 (346)
T ss_dssp EEECTTSHHHHHHHHHHHHTT-CCEEEEECSSCCCHHH-HHHHHHHHHTTCEEEECC-T---TCHHHH---HHHHHHTTC
T ss_pred EEECCCcHHHHHHHHHHHHCC-CCEEEEECCCCCChhH-HHHHHHHHhCCcEEEEee-c---CCHHHH---HHHHhhCCC
Confidence 45665 76654 667777777 5666665433111111 223445666777765432 1 234444 444555689
Q ss_pred CEEEEecCchhhhHHHHHH
Q psy2427 109 DAFIAVGGGSVIDTCKAAN 127 (660)
Q Consensus 109 D~IIavGGGsviD~AK~~a 127 (660)
|.||-..|..-++..+.+.
T Consensus 85 d~Vi~~a~~~n~~~~~~l~ 103 (346)
T 3i6i_A 85 DIVVSTVGGESILDQIALV 103 (346)
T ss_dssp CEEEECCCGGGGGGHHHHH
T ss_pred CEEEECCchhhHHHHHHHH
Confidence 9999999987666665543
No 417
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=23.74 E-value=1.7e+02 Score=28.06 Aligned_cols=64 Identities=3% Similarity=-0.026 Sum_probs=35.6
Q ss_pred CEEEEEECcc--ccccchHHHHHHHHHhCCCeEEEE-eCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 51 QRVCVMTDPH--LSKLAPVKATLDSLTRHGVKFELF-DKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 51 ~r~liVtd~~--~~~~~~~~~i~~~L~~~gi~~~~~-~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
+++.+|.... .+-....+-+.+.+++.|+.+.++ +. +.+.+.-.+..+.+...++|.||-.+..
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 75 (290)
T 3clk_A 9 NVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIVYSG---SADPEEQKHALLTAIERPVMGILLLSIA 75 (290)
T ss_dssp CEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEEC-------------CHHHHHHSSCCSEEEEESCC
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEeCC---CCCHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 4566665321 111224466777888889988765 32 2223333456667777899999988754
No 418
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=23.67 E-value=1.4e+02 Score=30.14 Aligned_cols=96 Identities=10% Similarity=0.070 Sum_probs=56.1
Q ss_pred ceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECcccc--ccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHH
Q psy2427 21 EYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLS--KLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLE 98 (660)
Q Consensus 21 ~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~--~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~ 98 (660)
.+.|++-|++-.-|...+.+..+.|..++ -..+-||+.... +...+ .+...+++.|+++...-- -.+.+.+.+++
T Consensus 14 ~~S~E~~PPk~~~~~~~l~~~~~~L~~~~-pd~vsVT~~~~g~~r~~t~-~~a~~i~~~g~~~i~Hlt-c~~~~~~~l~~ 90 (310)
T 3apt_A 14 LFSFEFFPPKDPEGEEALFRTLEELKAFR-PAFVSITYGAMGSTRERSV-AWAQRIQSLGLNPLAHLT-VAGQSRKEVAE 90 (310)
T ss_dssp EEEEEECCCSSHHHHHHHHHHHHHHGGGC-CSEEEECCCSTTCSHHHHH-HHHHHHHHTTCCBCEEEE-CTTSCHHHHHH
T ss_pred EEEEEEeCCCCcchHHHHHHHHHHHhcCC-CCEEEEecCCCCCcchhHH-HHHHHHHHhCCCeEEEee-cCCCCHHHHHH
Confidence 36667665543211222223334455554 356778874311 11121 234445467887553221 22478999999
Q ss_pred HHHHhHhcCCCEEEEecCchh
Q psy2427 99 ATKFVRSVQCDAFIAVGGGSV 119 (660)
Q Consensus 99 ~~~~~~~~~~D~IIavGGGsv 119 (660)
.+..+.+.+++-|+++.|-..
T Consensus 91 ~L~~~~~~GI~niLaLrGD~p 111 (310)
T 3apt_A 91 VLHRFVESGVENLLALRGDPP 111 (310)
T ss_dssp HHHHHHHTTCCEEEEECCCCS
T ss_pred HHHHHHHCCCCEEEEEcCCCC
Confidence 999999999999999998654
No 419
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius}
Probab=23.50 E-value=71 Score=30.77 Aligned_cols=31 Identities=19% Similarity=0.374 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHH--hHhcCCCEEEEecCchhhh
Q psy2427 91 PTGDSFLEATKF--VRSVQCDAFIAVGGGSVID 121 (660)
Q Consensus 91 p~~~~v~~~~~~--~~~~~~D~IIavGGGsviD 121 (660)
|+.++..+.+.. +.--+-..||++|.||...
T Consensus 2 ~~qd~~K~~aa~~A~~~V~~gmvvGlGTGSTv~ 34 (228)
T 4gmk_A 2 PNQDELKQLVGTKAVEWIKDGMIVGLGTGSTVK 34 (228)
T ss_dssp CHHHHHHHHHHHHHGGGCCTTCEEEECCSHHHH
T ss_pred cCHHHHHHHHHHHHHHhCCCCCEEEECchHHHH
Confidence 445555444332 2223446999999999854
No 420
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=23.25 E-value=1.2e+02 Score=29.22 Aligned_cols=49 Identities=14% Similarity=0.093 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
..+-+.+.+++.|+.+.+++. +.+.+.-.+..+.+...++|.||..+..
T Consensus 25 ~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 73 (288)
T 2qu7_A 25 VLTEISHECQKHHLHVAVASS---EENEDKQQDLIETFVSQNVSAIILVPVK 73 (288)
T ss_dssp HHHHHHHHHGGGTCEEEEEEC---TTCHHHHHHHHHHHHHTTEEEEEECCSS
T ss_pred HHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHHcCccEEEEecCC
Confidence 445667778888998877643 3455666677777778899999988654
No 421
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=23.23 E-value=60 Score=29.35 Aligned_cols=62 Identities=24% Similarity=0.260 Sum_probs=36.4
Q ss_pred CEEEEEECccccc--cchHHHHHHHHHhCC-C---eEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEec
Q psy2427 51 QRVCVMTDPHLSK--LAPVKATLDSLTRHG-V---KFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVG 115 (660)
Q Consensus 51 ~r~liVtd~~~~~--~~~~~~i~~~L~~~g-i---~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavG 115 (660)
-|+.||..+.-.. ...++-..+.|++.| + .+.++. +++- +|--..+-+.++..++|.||++|
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~v~~~~i~v~~-VPGa--fEiP~aa~~la~~~~yDavIaLG 80 (156)
T 3nq4_A 13 ARVAITIARFNQFINDSLLDGAVDALTRIGQVKDDNITVVW-VPGA--YELPLATEALAKSGKYDAVVALG 80 (156)
T ss_dssp CCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCCTTSEEEEE-ESST--TTHHHHHHHHHHHCSCSEEEEEE
T ss_pred CEEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCcccceEEEE-cCcH--HHHHHHHHHHHhcCCCCEEEEee
Confidence 4777777654222 135577788898888 5 355443 2222 22222233334567899999998
No 422
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=23.21 E-value=2.8e+02 Score=26.19 Aligned_cols=64 Identities=20% Similarity=0.120 Sum_probs=40.6
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
.|++||-|.... .+.+...|++.|..+..+. +..++.+.++...+|+||- +.++.-+++.+.+.
T Consensus 38 ~~ILivdd~~~~----~~~l~~~L~~~g~~v~~~~---------~~~~al~~~~~~~~DlvllD~~lp~~~G~~l~~~lr 104 (249)
T 3q9s_A 38 QRILVIEDDHDI----ANVLRMDLTDAGYVVDHAD---------SAMNGLIKAREDHPDLILLDLGLPDFDGGDVVQRLR 104 (249)
T ss_dssp CEEEEECSCHHH----HHHHHHHHHTTTCEEEEES---------SHHHHHHHHHHSCCSEEEEECCSCHHHHHHHHHHHH
T ss_pred CEEEEEECCHHH----HHHHHHHHHHCCCEEEEeC---------CHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 588888776643 2456677877777655432 2345566677788997765 45555566666553
No 423
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1
Probab=23.20 E-value=2.1e+02 Score=30.42 Aligned_cols=34 Identities=12% Similarity=0.092 Sum_probs=28.3
Q ss_pred eCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 85 DKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 85 ~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
-.+.++-+.+++.++++.+.+.++|.|+..++..
T Consensus 302 vKispd~~~ed~~~iA~~~~~aGaDgI~v~ntt~ 335 (443)
T 1tv5_A 302 VKLAPDLNQEQKKEIADVLLETNIDGMIISNTTT 335 (443)
T ss_dssp EEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBS
T ss_pred EEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 3456667778999999999999999999998754
No 424
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=23.15 E-value=71 Score=31.32 Aligned_cols=83 Identities=5% Similarity=-0.054 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCCCEEEEEECcccccc--chHHHHHHHHHhCCCeEE-EEeCcccCCCHHHHHHHHHHh--H-hcCCCEEE
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKL--APVKATLDSLTRHGVKFE-LFDKVRVEPTGDSFLEATKFV--R-SVQCDAFI 112 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~--~~~~~i~~~L~~~gi~~~-~~~~~~~~p~~~~v~~~~~~~--~-~~~~D~II 112 (660)
..+.++|.+.|.+|+.+|+++.-... ...+-+++.|++.|+.+. ++.. + .+...+.++.+ + ..++|+|+
T Consensus 133 ~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~---~--~~~~~~~~~~~~l~~~~~~~ai~ 207 (305)
T 3huu_A 133 YQLTQYLYHLGHRHILFLQESGHYAVTEDRSVGFKQYCDDVKISNDCVVIK---S--MNDLRDFIKQYCIDASHMPSVII 207 (305)
T ss_dssp HHHHHHHHHTTCCSEEEEEESSCBHHHHHHHHHHHHHHHHTTCCCCEEEEC---S--HHHHHHHC--------CCCSEEE
T ss_pred HHHHHHHHHCCCCeEEEEcCCcccchhHHHHHHHHHHHHHcCCCcccEEec---C--cHHHHHHHHHhhhcCCCCCCEEE
Confidence 44677888889999999987642211 123456778888887654 2221 1 21133333333 2 34789999
Q ss_pred EecCchhhhHHHHH
Q psy2427 113 AVGGGSVIDTCKAA 126 (660)
Q Consensus 113 avGGGsviD~AK~~ 126 (660)
+.....++-+.+++
T Consensus 208 ~~nd~~A~g~~~al 221 (305)
T 3huu_A 208 TSDVMLNMQLLNVL 221 (305)
T ss_dssp ESSHHHHHHHHHHH
T ss_pred ECChHHHHHHHHHH
Confidence 97766655555544
No 425
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=23.14 E-value=2.7e+02 Score=23.46 Aligned_cols=64 Identities=17% Similarity=0.180 Sum_probs=35.6
Q ss_pred EEEEEECccccccchHHHHHHHHHhC-CC-eEEEEeCcccCCCHHHHHHHHHHhHh-cCCCEEEE---ecCchhhhHHHH
Q psy2427 52 RVCVMTDPHLSKLAPVKATLDSLTRH-GV-KFELFDKVRVEPTGDSFLEATKFVRS-VQCDAFIA---VGGGSVIDTCKA 125 (660)
Q Consensus 52 r~liVtd~~~~~~~~~~~i~~~L~~~-gi-~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~D~IIa---vGGGsviD~AK~ 125 (660)
|++||.+.... ...+...|++. |. .+..+. +..++.+.+++ ..+|+||. +.+...+++.+.
T Consensus 5 ~iLivdd~~~~----~~~l~~~L~~~~g~~~v~~~~---------~~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~ 71 (154)
T 2qsj_A 5 VVLIVDDHHLI----RAGAKNLLEGAFSGMRVEGAE---------TVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVR 71 (154)
T ss_dssp EEEEECSCHHH----HHHHHHHHHHHCTTEEEEEES---------SHHHHHHHHHTTCCCSEEEECC------CHHHHHH
T ss_pred EEEEEcCCHHH----HHHHHHHHHhCCCceEEEEec---------CHHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHH
Confidence 67777665532 25566677765 66 333332 24556666666 78898774 355566666666
Q ss_pred HHh
Q psy2427 126 ANL 128 (660)
Q Consensus 126 ~a~ 128 (660)
+..
T Consensus 72 l~~ 74 (154)
T 2qsj_A 72 LKR 74 (154)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 426
>3ono_A Ribose/galactose isomerase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.75A {Vibrio parahaemolyticus}
Probab=22.98 E-value=2.4e+02 Score=26.79 Aligned_cols=64 Identities=11% Similarity=-0.018 Sum_probs=41.4
Q ss_pred EEEEEECccccccc---hHHHHHHHHHhCCCeEEEEeC--cc-cCCC-HHHHHHHHHHhHhcCCCEEEEecC
Q psy2427 52 RVCVMTDPHLSKLA---PVKATLDSLTRHGVKFELFDK--VR-VEPT-GDSFLEATKFVRSVQCDAFIAVGG 116 (660)
Q Consensus 52 r~liVtd~~~~~~~---~~~~i~~~L~~~gi~~~~~~~--~~-~~p~-~~~v~~~~~~~~~~~~D~IIavGG 116 (660)
|+.|.+|.. .+.. +++.+.+.|++.|.++.-|.- .. ...+ .+....+++.+.+..+|.-|.+.|
T Consensus 5 kIaigsDha-~~lK~~~i~~~l~~~L~~~G~eV~D~G~~~~~~~~~dYpd~a~~vA~~V~~g~~d~GIliCG 75 (214)
T 3ono_A 5 KIALMMENS-QAAKNAMVAGELNSVAGGLGHDVFNVGMTDENDHHLTYIHLGIMASILLNSKAVDFVVTGCG 75 (214)
T ss_dssp EEEECCCGG-GGGGHHHHHHHHHHHHHHTTCEEEECSCSSTTSSCCCHHHHHHHHHHHHHTTSCSEEEEEES
T ss_pred EEEEECCCc-HHHHChhHHHHHHHHHHHCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 777778877 4331 234899999999998876641 11 1233 345566666777778886665554
No 427
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=22.95 E-value=3.1e+02 Score=28.33 Aligned_cols=85 Identities=9% Similarity=-0.097 Sum_probs=54.1
Q ss_pred HHHHHHhcCCCEEEEEECccccc--cc--hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhH---------h-c
Q psy2427 41 VGMDMVNMKAQRVCVMTDPHLSK--LA--PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVR---------S-V 106 (660)
Q Consensus 41 l~~~l~~~g~~r~liVtd~~~~~--~~--~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~---------~-~ 106 (660)
..++|.+.|.+|+.+|+++.-.. .. ..+-.++.|++.|+++... ..++++.+.-.++++++. + .
T Consensus 147 A~~~Li~~Ghk~Ia~Isgp~~~~~~~~~~R~~Gyk~Al~e~Gi~~~~~--~~~d~t~e~G~~~a~~lL~~~~~~~~~~~~ 224 (371)
T 3qi7_A 147 LAERSKEMGAKAFIHYASTDDLKDVNIAKRLEMIKETCKNIGLPFVQV--NTPNINTEEDKNKVKQFLNEDIEKQVKKYG 224 (371)
T ss_dssp HHHHHHHTTCSCEEEEEETTGGGSHHHHHHHHHHHHHHHHTTCCEEEE--EECCCSSTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCCEEEEEeccccccchhHHHHHHHHHHHHHHcCCCceee--cCCCCchHHHHHHHHHHHhccccchhhccC
Confidence 45788889999999999865221 11 2344778899999987643 234566544334443322 2 3
Q ss_pred CCCEEEEecCchhhhHHHHHH
Q psy2427 107 QCDAFIAVGGGSVIDTCKAAN 127 (660)
Q Consensus 107 ~~D~IIavGGGsviD~AK~~a 127 (660)
.+++|++.=--.++.+-|++.
T Consensus 225 ~~TAIFatND~mAiG~ikal~ 245 (371)
T 3qi7_A 225 KDINVFGVNEYMDEVILTKAL 245 (371)
T ss_dssp SCCEEEESSHHHHHHHHHHHH
T ss_pred CCcEEEECCHHHHHHHHHHHH
Confidence 459999987666666666654
No 428
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=22.80 E-value=1.4e+02 Score=34.04 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHH
Q psy2427 93 GDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAAN 127 (660)
Q Consensus 93 ~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a 127 (660)
.+...++++.++++++|.+|.|||--.++.|..++
T Consensus 84 ~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~ 118 (766)
T 3o8o_B 84 REGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFR 118 (766)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHH
Confidence 45667888999999999999999988888887553
No 429
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=22.70 E-value=1.8e+02 Score=31.98 Aligned_cols=43 Identities=2% Similarity=-0.062 Sum_probs=30.5
Q ss_pred hHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEE
Q psy2427 37 VTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFEL 83 (660)
Q Consensus 37 ~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~ 83 (660)
.++++.+.|.+ .+|++|+.|....... +.+.+..++.|+.+..
T Consensus 203 ~i~~~~~~l~~--a~rpvIl~G~g~~~~~--~~l~~lae~~~~Pv~~ 245 (590)
T 1ybh_A 203 HLEQIVRLISE--SKKPVLYVGGGCLNSS--DELGRFVELTGIPVAS 245 (590)
T ss_dssp HHHHHHHHHHH--CSSEEEEECGGGTTCH--HHHHHHHHHHCCCEEE
T ss_pred HHHHHHHHHHh--CCCcEEEECcccccCH--HHHHHHHHHhCCCEEE
Confidence 34555555555 3799999998876654 7777777777888764
No 430
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=22.63 E-value=2.1e+02 Score=28.84 Aligned_cols=33 Identities=12% Similarity=-0.062 Sum_probs=20.7
Q ss_pred HHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhc
Q psy2427 96 FLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYC 131 (660)
Q Consensus 96 v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~ 131 (660)
+..+.+.+++.++|+||+-+.-- .+..+|...+
T Consensus 117 ~~~l~~~~~~~~pD~Vv~d~~~~---~~~~~A~~~g 149 (400)
T 4amg_A 117 VDGALRTARSWRPDLVVHTPTQG---AGPLTAAALQ 149 (400)
T ss_dssp HHHHHHHHHHHCCSEEEECTTCT---HHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCEEEECcchH---HHHHHHHHcC
Confidence 44566778889999999765432 2344444443
No 431
>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus}
Probab=22.57 E-value=4.1e+02 Score=25.72 Aligned_cols=56 Identities=14% Similarity=-0.002 Sum_probs=42.6
Q ss_pred HhCCCeEE-EEeCcccCCCHHHHHHHHHHhHhcCCCEE-EEecCchhhhHHHHHHhHh
Q psy2427 75 TRHGVKFE-LFDKVRVEPTGDSFLEATKFVRSVQCDAF-IAVGGGSVIDTCKAANLYY 130 (660)
Q Consensus 75 ~~~gi~~~-~~~~~~~~p~~~~v~~~~~~~~~~~~D~I-IavGGGsviD~AK~~a~~~ 130 (660)
.+.+..+. -|..++..|+.+++.+..+.+.+.++|.+ ||+=--+.-|...+..+..
T Consensus 136 ~~~~~kvI~S~Hdf~~tP~~~el~~~~~~~~~~gaDivKia~~a~s~~D~l~ll~~~~ 193 (257)
T 2yr1_A 136 EECSVWLVVSRHYFDGTPRKETLLADMRQAERYGADIAKVAVMPKSPEDVLVLLQATE 193 (257)
T ss_dssp HHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTTCSEEEEEECCSSHHHHHHHHHHHH
T ss_pred HhCCCEEEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEEeccCCHHHHHHHHHHHH
Confidence 33444433 35566778889999999999999999965 7777788999999887654
No 432
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=22.57 E-value=2.3e+02 Score=27.42 Aligned_cols=49 Identities=10% Similarity=0.162 Sum_probs=35.1
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
..+-+.+.+++.|+.+.+++. +.+.+.-.+.++.+...++|.||-.+..
T Consensus 20 ~~~gi~~~a~~~g~~l~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 68 (306)
T 2vk2_A 20 ETNVAKSEAEKRGITLKIADG---QQKQENQIKAVRSFVAQGVDAIFIAPVV 68 (306)
T ss_dssp HHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHHHHTCSEEEECCSS
T ss_pred HHHHHHHHHHHcCCEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 345577778888998877643 3455566667777778899999987654
No 433
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=22.46 E-value=89 Score=34.09 Aligned_cols=43 Identities=7% Similarity=0.033 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEE
Q psy2427 38 TREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE 82 (660)
Q Consensus 38 ~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~ 82 (660)
++++.+.|.+ .+|++||.|.........+.+.+..++.++.+.
T Consensus 199 i~~~~~~l~~--a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~ 241 (552)
T 1ovm_A 199 RDAAENKLAM--SKRTALLADFLVLRHGLKHALQKWVKEVPMAHA 241 (552)
T ss_dssp HHHHHHHHHT--CSCEEEEECHHHHHTTCHHHHHHHHHHSCCEEE
T ss_pred HHHHHHHHHh--CCCCEEEECcCccccCHHHHHHHHHHHHCCCEE
Confidence 4555555554 479999999887655556788888888888875
No 434
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=22.37 E-value=1.4e+02 Score=35.07 Aligned_cols=36 Identities=19% Similarity=0.125 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHh
Q psy2427 93 GDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANL 128 (660)
Q Consensus 93 ~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~ 128 (660)
.+...++++.+++.++|.+|.|||--.++.|..++.
T Consensus 290 ~e~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~L~~ 325 (989)
T 3opy_A 290 RWGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRK 325 (989)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHH
Confidence 456788999999999999999999888888877653
No 435
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=22.29 E-value=3.3e+02 Score=22.40 Aligned_cols=64 Identities=16% Similarity=0.050 Sum_probs=40.6
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
.+++||-|.... ...+...|+..|+.+..+. +..++.+.++...+|+||- +.|..-+++.+.+.
T Consensus 4 ~~ILivdd~~~~----~~~l~~~L~~~g~~v~~~~---------~~~~al~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~ 70 (138)
T 3c3m_A 4 YTILVVDDSPMI----VDVFVTMLERGGYRPITAF---------SGEECLEALNATPPDLVLLDIMMEPMDGWETLERIK 70 (138)
T ss_dssp CEEEEECSCHHH----HHHHHHHHHHTTCEEEEES---------SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred ceEEEEeCCHHH----HHHHHHHHHHcCceEEEeC---------CHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 478888776542 2456677777787765432 2345556667778998764 45666677777654
No 436
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A*
Probab=22.07 E-value=1.5e+02 Score=30.01 Aligned_cols=25 Identities=20% Similarity=0.221 Sum_probs=15.7
Q ss_pred HHHHHHHhHh-cCCC-EEEEecCchhh
Q psy2427 96 FLEATKFVRS-VQCD-AFIAVGGGSVI 120 (660)
Q Consensus 96 v~~~~~~~~~-~~~D-~IIavGGGsvi 120 (660)
..|+.+++.. .++| +|+++|||..+
T Consensus 187 ~~EI~~q~~~~~~~d~vv~~vGtGGt~ 213 (342)
T 4d9b_A 187 ALEIAQQCEEVVGLSSVVVASGSAGTH 213 (342)
T ss_dssp HHHHHHHHTTTCCCCEEEEEESSSHHH
T ss_pred HHHHHHHHhccCCCCEEEEeCCCCHHH
Confidence 3455555542 3577 77899988763
No 437
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=21.99 E-value=52 Score=29.70 Aligned_cols=61 Identities=25% Similarity=0.328 Sum_probs=35.7
Q ss_pred CEEEEEECccccc--cchHHHHHHHHHhCCCe---EEEEeCcccCCCHHHHHHHHH-HhHhcCCCEEEEec
Q psy2427 51 QRVCVMTDPHLSK--LAPVKATLDSLTRHGVK---FELFDKVRVEPTGDSFLEATK-FVRSVQCDAFIAVG 115 (660)
Q Consensus 51 ~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~---~~~~~~~~~~p~~~~v~~~~~-~~~~~~~D~IIavG 115 (660)
.|+.||..+.-.. ...++-..+.|++.|+. +.++. -|..-++--+++ .++..++|.||++|
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~----VPGafEiP~aa~~la~~~~yDavIalG 79 (154)
T 1hqk_A 13 LRFGIVASRFNHALVDRLVEGAIDCIVRHGGREEDITLVR----VPGSWEIPVAAGELARKEDIDAVIAIG 79 (154)
T ss_dssp CCEEEEEECTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEE----ESSGGGHHHHHHHHHTCTTCCEEEEEE
T ss_pred CEEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCccceEEEE----CCcHHHHHHHHHHHHhcCCCCEEEEee
Confidence 4677777654222 12557777888888863 34442 132222333333 34556899999997
No 438
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=21.91 E-value=3.4e+02 Score=25.91 Aligned_cols=49 Identities=6% Similarity=-0.007 Sum_probs=33.8
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG 116 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG 116 (660)
..+-+.+.+++.|+++.++.. ...+.+...+..+.+...++|.||-.+.
T Consensus 22 ~~~g~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~l~~~~vdgiii~~~ 70 (303)
T 3d02_A 22 MGEGVVQAGKEFNLNASQVGP--SSTDAPQQVKIIEDLIARKVDAITIVPN 70 (303)
T ss_dssp HHHHHHHHHHHTTEEEEEECC--SSSCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred HHHHHHHHHHHcCCEEEEECC--CCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 446677788888988764321 1345566666777777789999998765
No 439
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=21.90 E-value=1.5e+02 Score=29.89 Aligned_cols=85 Identities=12% Similarity=0.084 Sum_probs=50.2
Q ss_pred eEEECcChHHH-HHHHHHhcCCCEEEEEECccccc-c---chHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhH
Q psy2427 30 TIRIGPGVTRE-VGMDMVNMKAQRVCVMTDPHLSK-L---APVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVR 104 (660)
Q Consensus 30 ~i~~G~g~~~~-l~~~l~~~g~~r~liVtd~~~~~-~---~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~ 104 (660)
-+++|..-+.. .-+.|.+.|..-+.|||.+.-.. . -....+.+..++.|+.+..... ..+. +..+.++
T Consensus 7 Ivf~Gtp~fa~~~L~~L~~~~~~v~~Vvt~pd~~~gRg~~l~~~pv~~~A~~~gIpv~~~~~---~~~~----~~~~~l~ 79 (317)
T 3rfo_A 7 VVFMGTPDFSVPVLRRLIEDGYDVIGVVTQPDRPVGRKKVLTPTPVKVEAEKHGIPVLQPLR---IREK----DEYEKVL 79 (317)
T ss_dssp EEEECCSTTHHHHHHHHHHTTCEEEEEECCCCCEETTTTEECCCHHHHHHHHTTCCEECCSC---TTSH----HHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHCCCcEEEEEeCCCcccCCCcccCCCHHHHHHHHcCCCEEcccc---CCCH----HHHHHHH
Confidence 34678874432 22334444666777888653210 0 0113577777788998653211 1222 3356778
Q ss_pred hcCCCEEEEecCchhhh
Q psy2427 105 SVQCDAFIAVGGGSVID 121 (660)
Q Consensus 105 ~~~~D~IIavGGGsviD 121 (660)
+.++|+||.+|=|..+-
T Consensus 80 ~~~~Dliv~~~y~~ilp 96 (317)
T 3rfo_A 80 ALEPDLIVTAAFGQIVP 96 (317)
T ss_dssp HHCCSEEEESSCCSCCC
T ss_pred hcCCCEEEEcCchhhCC
Confidence 88999999999887763
No 440
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=21.84 E-value=1.7e+02 Score=30.19 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhHhcCCCEEEEecCchh
Q psy2427 93 GDSFLEATKFVRSVQCDAFIAVGGGSV 119 (660)
Q Consensus 93 ~~~v~~~~~~~~~~~~D~IIavGGGsv 119 (660)
...+.++.+.+++.++|+|+.+|+-..
T Consensus 97 ~~~~~~l~~~l~~~kPDvVi~~g~~~~ 123 (396)
T 3dzc_A 97 SKILLGMQQVLSSEQPDVVLVHGDTAT 123 (396)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEETTSHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCchh
Confidence 445677788888999999999997554
No 441
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=21.76 E-value=91 Score=29.19 Aligned_cols=61 Identities=15% Similarity=0.035 Sum_probs=40.5
Q ss_pred HHHHHHHHhCCCe--EEEEeCcccCCCHHHHHHHHHHhHh-cCCCEEEEecCchhh--hHHHHHHhHh
Q psy2427 68 KATLDSLTRHGVK--FELFDKVRVEPTGDSFLEATKFVRS-VQCDAFIAVGGGSVI--DTCKAANLYY 130 (660)
Q Consensus 68 ~~i~~~L~~~gi~--~~~~~~~~~~p~~~~v~~~~~~~~~-~~~D~IIavGGGsvi--D~AK~~a~~~ 130 (660)
.-+.+.|++.|++ +..+.-++. +.+.+.+.++.+.+ .++|+||--||=++. |..+-+-..+
T Consensus 26 ~~L~~~L~~~G~~~~v~~~~iV~D--d~~~I~~al~~a~~~~~~DlVitTGGtg~g~~D~T~ea~~~~ 91 (195)
T 1di6_A 26 PALEEWLTSALTTPFELETRLIPD--EQAIIEQTLCELVDEMSCHLVLTTGGTGPARRDVTPDATLAV 91 (195)
T ss_dssp HHHHHHHHHHBCSCEEEEEEEEES--CHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCCHHHHHHHT
T ss_pred HHHHHHHHHcCCCCceEEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCccHHHHHHHH
Confidence 4577788888876 333332222 35677777776665 379999999999877 8877554433
No 442
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=21.75 E-value=3.6e+02 Score=25.17 Aligned_cols=51 Identities=12% Similarity=0.036 Sum_probs=37.5
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC-CCEEEEecCc
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ-CDAFIAVGGG 117 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~-~D~IIavGGG 117 (660)
..+-+.+.+++.|+.+.++. ...+.+.+.-.+..+.+...+ +|.||-.+..
T Consensus 18 ~~~gi~~~~~~~g~~~~~~~-~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~ 69 (276)
T 3ksm_A 18 VYLGAQKAADEAGVTLLHRS-TKDDGDIAGQIQILSYHLSQAPPDALILAPNS 69 (276)
T ss_dssp HHHHHHHHHHHHTCEEEECC-CSSTTCHHHHHHHHHHHHHHSCCSEEEECCSS
T ss_pred HHHHHHHHHHHcCCEEEEEC-CCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 45667788888899887653 223456677777888888888 9999998753
No 443
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=21.72 E-value=1.5e+02 Score=32.06 Aligned_cols=44 Identities=7% Similarity=-0.043 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEE
Q psy2427 37 VTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE 82 (660)
Q Consensus 37 ~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~ 82 (660)
.++++.+.|.+ .+|++|+.|.........+.+.+..++.++.+.
T Consensus 189 ~i~~~~~~l~~--a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~ 232 (528)
T 1q6z_A 189 DLDILVKALNS--ASNPAIVLGPDVDAANANADCVMLAERLKAPVW 232 (528)
T ss_dssp HHHHHHHHHHH--CSSCEEEECHHHHHTTCHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHhc--CCCeEEEECCccchhhHHHHHHHHHHHHCCCEE
Confidence 35566666665 379999999886554455777777777788873
No 444
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=21.72 E-value=3.4e+02 Score=22.45 Aligned_cols=64 Identities=11% Similarity=-0.004 Sum_probs=37.6
Q ss_pred CEEEEEECccccccchHHHHHHHHHhC-CCeEE-EEeCcccCCCHHHHHHHHHHhHhc-CCCEEEE---ecCchhhhHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRH-GVKFE-LFDKVRVEPTGDSFLEATKFVRSV-QCDAFIA---VGGGSVIDTCK 124 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~-gi~~~-~~~~~~~~p~~~~v~~~~~~~~~~-~~D~IIa---vGGGsviD~AK 124 (660)
.+++||-|... ..+.+...|++. |+.+. .+. +..++.+.+++. .+|+||- +.|..-+++.+
T Consensus 14 ~~vlivdd~~~----~~~~l~~~L~~~~~~~~v~~~~---------~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~ 80 (145)
T 3kyj_B 14 YNVMIVDDAAM----MRLYIASFIKTLPDFKVVAQAA---------NGQEALDKLAAQPNVDLILLDIEMPVMDGMEFLR 80 (145)
T ss_dssp EEEEEECSCHH----HHHHHHHHHTTCTTEEEEEEES---------SHHHHHHHHHHCTTCCEEEECTTSCCCTTCHHHH
T ss_pred CeEEEEcCCHH----HHHHHHHHHHhCCCceEEEEEC---------CHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHH
Confidence 45666655443 225567777765 55533 222 234556666666 7897775 45666677777
Q ss_pred HHH
Q psy2427 125 AAN 127 (660)
Q Consensus 125 ~~a 127 (660)
.+.
T Consensus 81 ~lr 83 (145)
T 3kyj_B 81 HAK 83 (145)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 445
>2egz_A 3-dehydroquinate dehydratase; aquifex aeolicus VF5, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TLA; 1.75A {Aquifex aeolicus} PDB: 2ysw_A
Probab=21.67 E-value=4.5e+02 Score=24.69 Aligned_cols=62 Identities=15% Similarity=0.041 Sum_probs=44.8
Q ss_pred HHHHHHHHhCCCeEE-EEeCcccCCCHHHHHHHHHHhHhcCCCEE-EEecCchhhhHHHHHHhHh
Q psy2427 68 KATLDSLTRHGVKFE-LFDKVRVEPTGDSFLEATKFVRSVQCDAF-IAVGGGSVIDTCKAANLYY 130 (660)
Q Consensus 68 ~~i~~~L~~~gi~~~-~~~~~~~~p~~~~v~~~~~~~~~~~~D~I-IavGGGsviD~AK~~a~~~ 130 (660)
+.+.+..+..|..+. -|..++..|+.+++.+..+.+.+.++ .+ |++=--+.-|..++..+..
T Consensus 98 ~~l~~~~~~~g~kvI~S~Hdf~~tp~~~el~~~~~~~~~~ga-ivKia~~a~~~~D~l~ll~~~~ 161 (219)
T 2egz_A 98 VKLYNITKEAGKKLIISYHNFELTPPNWIIREVLREGYRYGG-IPKIAVKANSYEDVARLLCISR 161 (219)
T ss_dssp HHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTTS-EEEEEEECSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHHHHHHHHcCC-EEEEEEccCCHHHHHHHHHHHH
Confidence 345555666676544 35667778888999999999999886 33 6666777888888877654
No 446
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=21.62 E-value=2.5e+02 Score=26.92 Aligned_cols=85 Identities=8% Similarity=0.053 Sum_probs=50.9
Q ss_pred HHHHHHHhc-C--CCEEEEEECcccccc--chHHHHHHHHHhC-CCeEEEEeCcccCCCHHHHHHHHHHhHh--cCCCEE
Q psy2427 40 EVGMDMVNM-K--AQRVCVMTDPHLSKL--APVKATLDSLTRH-GVKFELFDKVRVEPTGDSFLEATKFVRS--VQCDAF 111 (660)
Q Consensus 40 ~l~~~l~~~-g--~~r~liVtd~~~~~~--~~~~~i~~~L~~~-gi~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~I 111 (660)
.+.++|.+. | .+|+.+|+++.-... ...+-+++.|++. |+++.. ....+-+.+.-.++++.+.+ .++|+|
T Consensus 120 ~a~~~L~~~~G~~~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~g~~~~~--~~~~~~~~~~~~~~~~~ll~~~~~~~ai 197 (288)
T 1gud_A 120 KGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQIKLVA--SQPADWDRIKALDVATNVLQRNPNIKAI 197 (288)
T ss_dssp HHHHHHHHHHGGGCEEEEEEECSTTCHHHHHHHHHHHHHHHTCTTEEEEE--EEECTTCHHHHHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHHhCCCCCEEEEEeCCCCCchHhHHHHHHHHHHHhCCCcEEEE--eecCCccHHHHHHHHHHHHHhCCCceEE
Confidence 356777776 7 799999997642211 1223466778776 776432 12234555655555554433 357999
Q ss_pred EEecCchhhhHHHHH
Q psy2427 112 IAVGGGSVIDTCKAA 126 (660)
Q Consensus 112 IavGGGsviD~AK~~ 126 (660)
++.....++-+.+++
T Consensus 198 ~~~nD~~A~g~~~al 212 (288)
T 1gud_A 198 YCANDTMAMGVAQAV 212 (288)
T ss_dssp EESSHHHHHHHHHHH
T ss_pred EECCCchHHHHHHHH
Confidence 998776665555544
No 447
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=21.61 E-value=64 Score=29.27 Aligned_cols=61 Identities=18% Similarity=0.273 Sum_probs=36.2
Q ss_pred CEEEEEECccccc--cchHHHHHHHHHh-CCCe---EEEEeCcccCCCHHHHHHH-HHHhHhcCCCEEEEec
Q psy2427 51 QRVCVMTDPHLSK--LAPVKATLDSLTR-HGVK---FELFDKVRVEPTGDSFLEA-TKFVRSVQCDAFIAVG 115 (660)
Q Consensus 51 ~r~liVtd~~~~~--~~~~~~i~~~L~~-~gi~---~~~~~~~~~~p~~~~v~~~-~~~~~~~~~D~IIavG 115 (660)
-|+.||..+.-.. ...++-.++.|++ .|+. +.++. -|..-++--+ -+.++..++|.||++|
T Consensus 18 ~riaIV~arfn~~I~~~Ll~ga~~~l~~~~Gv~~~~i~v~~----VPGafEiP~aa~~la~~~~yDavIaLG 85 (159)
T 1kz1_A 18 LRILIVHARGNLQAIEPLVKGAVETMIEKHDVKLENIDIES----VPGSWELPQGIRASIARNTYDAVIGIG 85 (159)
T ss_dssp CCEEEEECCTTHHHHHHHHHHHHHHHHHHHCCCGGGEEEEE----CSSGGGHHHHHHHHHHHSCCSEEEEEE
T ss_pred CEEEEEEeeCcHHHHHHHHHHHHHHHHHHcCCCccceEEEE----CCcHHHHHHHHHHHHhcCCCCEEEEec
Confidence 4788887764322 1255667788888 7753 44443 2332223233 3344567899999997
No 448
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=21.42 E-value=2e+02 Score=26.72 Aligned_cols=63 Identities=22% Similarity=0.257 Sum_probs=36.1
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAA 126 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~ 126 (660)
.|++||-|.... .+.+...|+..|+.+..+.. ..++.+.+++..+|+||- +.+..-+++.+.+
T Consensus 6 ~~ILivdd~~~~----~~~l~~~L~~~g~~v~~~~~---------~~~al~~l~~~~~dlvilD~~l~~~~g~~~~~~l 71 (238)
T 2gwr_A 6 QRILVVDDDASL----AEMLTIVLRGEGFDTAVIGD---------GTQALTAVRELRPDLVLLDLMLPGMNGIDVCRVL 71 (238)
T ss_dssp CEEEEECSCHHH----HHHHHHHHHHTTCEEEEECC---------GGGHHHHHHHHCCSEEEEESSCSSSCHHHHHHHH
T ss_pred CeEEEEeCCHHH----HHHHHHHHHHCCCEEEEECC---------HHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 477777766532 24566667777777654432 223445555667887763 3455556665544
No 449
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=21.36 E-value=3.2e+02 Score=26.44 Aligned_cols=51 Identities=8% Similarity=0.003 Sum_probs=34.6
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
..+-+.+.+++.|+.+.++.. .+.+.+.-.+.++.+...++|.||..+..+
T Consensus 18 ~~~gi~~~~~~~g~~~~~~~~--~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~ 68 (313)
T 2h3h_A 18 VEQGVKAAGKALGVDTKFFVP--QKEDINAQLQMLESFIAEGVNGIAIAPSDP 68 (313)
T ss_dssp HHHHHHHHHHHHTCEEEEECC--SSSCHHHHHHHHHHHHHTTCSEEEECCSST
T ss_pred HHHHHHHHHHHcCCEEEEECC--CCCCHHHHHHHHHHHHHcCCCEEEEeCCCh
Confidence 445667777788988876531 134555556667777778999999876543
No 450
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=21.36 E-value=2.7e+02 Score=23.02 Aligned_cols=63 Identities=16% Similarity=0.095 Sum_probs=38.7
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCC--eEEEEeCcccCCCHHHHHHHHHHhHh----------cCCCEEEE---ec
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGV--KFELFDKVRVEPTGDSFLEATKFVRS----------VQCDAFIA---VG 115 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi--~~~~~~~~~~~p~~~~v~~~~~~~~~----------~~~D~IIa---vG 115 (660)
.|++||.|.... .+.+...|++.|. .+..+.. ..++.+.+++ ..+|+||. +.
T Consensus 7 ~~iLivdd~~~~----~~~l~~~L~~~g~~~~v~~~~~---------~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~ 73 (149)
T 1k66_A 7 QPLLVVEDSDED----FSTFQRLLQREGVVNPIYRCIT---------GDQALDFLYQTGSYCNPDIAPRPAVILLDLNLP 73 (149)
T ss_dssp SCEEEECCCHHH----HHHHHHHHHHTTBCSCEEEECS---------HHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCS
T ss_pred ccEEEEECCHHH----HHHHHHHHHHcCCCceEEEECC---------HHHHHHHHHhcccccCcccCCCCcEEEEECCCC
Confidence 578888776532 2567778888776 4544322 3445555554 67898874 45
Q ss_pred CchhhhHHHHH
Q psy2427 116 GGSVIDTCKAA 126 (660)
Q Consensus 116 GGsviD~AK~~ 126 (660)
+..-+++.+.+
T Consensus 74 ~~~g~~~~~~l 84 (149)
T 1k66_A 74 GTDGREVLQEI 84 (149)
T ss_dssp SSCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 55656666655
No 451
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=21.27 E-value=3.1e+02 Score=27.40 Aligned_cols=83 Identities=10% Similarity=0.181 Sum_probs=50.2
Q ss_pred ceE-EECcChHHHHHHHHHh-----cCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHH
Q psy2427 29 STI-RIGPGVTREVGMDMVN-----MKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKF 102 (660)
Q Consensus 29 ~~i-~~G~g~~~~l~~~l~~-----~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~ 102 (660)
.|| +|.+|.-..|...+.. ++.+-++||+++.-. . ..-++.|+.+..++. ......+.=.++.+.
T Consensus 106 ~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~I~~Visn~~~~-----~---~~A~~~gIp~~~~~~-~~~~r~~~~~~~~~~ 176 (302)
T 3o1l_A 106 KRVVLMASRESHCLADLLHRWHSDELDCDIACVISNHQDL-----R---SMVEWHDIPYYHVPV-DPKDKEPAFAEVSRL 176 (302)
T ss_dssp CEEEEEECSCCHHHHHHHHHHHTTCSCSEEEEEEESSSTT-----H---HHHHTTTCCEEECCC-CSSCCHHHHHHHHHH
T ss_pred cEEEEEEeCCchhHHHHHHHHHCCCCCcEEEEEEECcHHH-----H---HHHHHcCCCEEEcCC-CcCCHHHHHHHHHHH
Confidence 344 4545444455555543 344567778876421 1 234567999876532 112223334567888
Q ss_pred hHhcCCCEEEEecCchhh
Q psy2427 103 VRSVQCDAFIAVGGGSVI 120 (660)
Q Consensus 103 ~~~~~~D~IIavGGGsvi 120 (660)
+++.++|+||-.|=+.++
T Consensus 177 l~~~~~DliVlagym~IL 194 (302)
T 3o1l_A 177 VGHHQADVVVLARYMQIL 194 (302)
T ss_dssp HHHTTCSEEEESSCCSCC
T ss_pred HHHhCCCEEEHhHhhhhc
Confidence 999999999999988776
No 452
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=21.07 E-value=2.7e+02 Score=24.01 Aligned_cols=66 Identities=17% Similarity=0.007 Sum_probs=40.1
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
-|++||-|.... .+.+...|++.+....+.. ..+..++.+.+++..+|+||. +.+...+++.+.+.
T Consensus 26 ~~ILivdd~~~~----~~~l~~~L~~~~~~~~v~~-------~~~~~~al~~l~~~~~dlvilD~~l~~~~g~~l~~~lr 94 (164)
T 3t8y_A 26 IRVLVVDDSAFM----RMVLKDIIDSQPDMKVVGF-------AKDGLEAVEKAIELKPDVITMDIEMPNLNGIEALKLIM 94 (164)
T ss_dssp EEEEEECSCHHH----HHHHHHHHHTSTTEEEEEE-------ESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHH
T ss_pred cEEEEEcCCHHH----HHHHHHHHhcCCCeEEEEe-------cCCHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 478888776532 2557777776643222211 123355566667778998876 56777777777664
No 453
>3d3k_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.20A {Homo sapiens}
Probab=21.03 E-value=2.4e+02 Score=27.49 Aligned_cols=53 Identities=19% Similarity=0.217 Sum_probs=31.0
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS 105 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~ 105 (660)
+|++|+++++=..-.. =-+-+.|...|.++.+|--...... +......+.++.
T Consensus 86 ~~vlVlcG~GNNGGDG-lv~AR~L~~~G~~V~v~~~~~~~~~-~~a~~~~~~~~~ 138 (259)
T 3d3k_A 86 PTVALLCGPHVKGAQG-ISCGRHLANHDVQVILFLPNFVKML-ESITNELSLFSK 138 (259)
T ss_dssp CEEEEEECSSHHHHHH-HHHHHHHHHTTCEEEEECCBCSSCC-HHHHHHHHHHTT
T ss_pred CeEEEEECCCCCHHHH-HHHHHHHHHCCCeEEEEEecCCCCC-HHHHHHHHHHHH
Confidence 4899999986332111 2355678888999988743332333 444444555443
No 454
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=20.99 E-value=1.4e+02 Score=32.77 Aligned_cols=45 Identities=13% Similarity=0.022 Sum_probs=32.2
Q ss_pred hHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEE
Q psy2427 37 VTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFEL 83 (660)
Q Consensus 37 ~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~ 83 (660)
.++++.+.|.+ .+|++|+.|.........+.+.+..++.|+.+..
T Consensus 196 ~i~~~~~~l~~--a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~ 240 (566)
T 1ozh_A 196 AIDQVAKLIAQ--AKNPIFLLGLMASQPENSKALRRLLETSHIPVTS 240 (566)
T ss_dssp HHHHHHHHHHH--CSSEEEEECGGGGSGGGHHHHHHHHHHHCCCEEE
T ss_pred HHHHHHHHHHc--CCCeEEEECCCcccccHHHHHHHHHHHHCCCEEE
Confidence 35556666655 3799999999876555567788877777888763
No 455
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=20.71 E-value=2.6e+02 Score=26.49 Aligned_cols=65 Identities=11% Similarity=0.120 Sum_probs=41.7
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAAN 127 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~a 127 (660)
.|++||-|..... ..+...|++.|+.+..+.. ..++.+.+++..+|+||- ..+..-+++++.+.
T Consensus 130 ~~ILivdd~~~~~----~~l~~~L~~~g~~v~~a~~---------~~eal~~l~~~~~dlvl~D~~mp~~~G~~l~~~ir 196 (254)
T 2ayx_A 130 MMILVVDDHPINR----RLLADQLGSLGYQCKTAND---------GVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIR 196 (254)
T ss_dssp CEEEEEESSHHHH----HHHHHHHHHHTSEEEEECC---------SHHHHHHHHHSCCSEEEEEESSCSSCCHHHHHHHH
T ss_pred CEEEEEeCCHHHH----HHHHHHHHHcCCEEEEECC---------HHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 4788888876432 4566677777887765432 244556667778998874 34555567777664
Q ss_pred h
Q psy2427 128 L 128 (660)
Q Consensus 128 ~ 128 (660)
.
T Consensus 197 ~ 197 (254)
T 2ayx_A 197 Q 197 (254)
T ss_dssp H
T ss_pred h
Confidence 4
No 456
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=20.64 E-value=2.7e+02 Score=26.54 Aligned_cols=86 Identities=13% Similarity=0.034 Sum_probs=50.2
Q ss_pred HHHHHHHHhc-C-CCEEEEEECccccc--cchHHHHHHHHHhC-CCeEEEEeCcccCCCHHHHHHHHHHhHh--cCCCEE
Q psy2427 39 REVGMDMVNM-K-AQRVCVMTDPHLSK--LAPVKATLDSLTRH-GVKFELFDKVRVEPTGDSFLEATKFVRS--VQCDAF 111 (660)
Q Consensus 39 ~~l~~~l~~~-g-~~r~liVtd~~~~~--~~~~~~i~~~L~~~-gi~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~I 111 (660)
..+.++|.+. | .+|+.+++++.-.. ....+-+++.|++. |+++.. ....+.+.+...+.++.+.+ .++|+|
T Consensus 110 ~~a~~~L~~~~gg~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~--~~~~~~~~~~~~~~~~~ll~~~~~~~ai 187 (283)
T 2ioy_A 110 EMAAEFIAKALKGKGNVVELEGIPGASAARDRGKGFDEAIAKYPDIKIVA--KQAADFDRSKGLSVMENILQAQPKIDAV 187 (283)
T ss_dssp HHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHTTCTTEEEEE--EEECTTCHHHHHHHHHHHHHHCSCCCEE
T ss_pred HHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCCEEEe--eccCCCCHHHHHHHHHHHHHhCCCccEE
Confidence 3466777776 5 78999998753211 11224466778776 776432 12234455555555554433 357999
Q ss_pred EEecCchhhhHHHHH
Q psy2427 112 IAVGGGSVIDTCKAA 126 (660)
Q Consensus 112 IavGGGsviD~AK~~ 126 (660)
++.....++-+.+++
T Consensus 188 ~~~nD~~A~g~~~al 202 (283)
T 2ioy_A 188 FAQNDEMALGAIKAI 202 (283)
T ss_dssp EESSHHHHHHHHHHH
T ss_pred EECCchHHHHHHHHH
Confidence 998766655554443
No 457
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=20.57 E-value=2.3e+02 Score=23.60 Aligned_cols=66 Identities=5% Similarity=0.004 Sum_probs=37.8
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCC-CeEEEEeCcccCCCHHHHHHHHHHhHh-cCCCEEEE---ecCchhhhHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHG-VKFELFDKVRVEPTGDSFLEATKFVRS-VQCDAFIA---VGGGSVIDTCKA 125 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~g-i~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~D~IIa---vGGGsviD~AK~ 125 (660)
.|++||-|.... ...+...|++.| +.+..+.. ..+.+..+ .+. ..+|+||- +.+...+++.+.
T Consensus 21 ~~ilivdd~~~~----~~~l~~~L~~~g~~~v~~~~~-----~~~~~~~~---~~~~~~~dlvi~D~~l~~~~g~~~~~~ 88 (146)
T 4dad_A 21 INILVASEDASR----LAHLARLVGDAGRYRVTRTVG-----RAAQIVQR---TDGLDAFDILMIDGAALDTAELAAIEK 88 (146)
T ss_dssp CEEEEECSCHHH----HHHHHHHHHHHCSCEEEEECC-----CHHHHTTC---HHHHTTCSEEEEECTTCCHHHHHHHHH
T ss_pred CeEEEEeCCHHH----HHHHHHHHhhCCCeEEEEeCC-----HHHHHHHH---HhcCCCCCEEEEeCCCCCccHHHHHHH
Confidence 688888776543 245667777777 77665432 22222222 223 67897764 356666666666
Q ss_pred HHh
Q psy2427 126 ANL 128 (660)
Q Consensus 126 ~a~ 128 (660)
+..
T Consensus 89 l~~ 91 (146)
T 4dad_A 89 LSR 91 (146)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 458
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=20.49 E-value=5.3e+02 Score=24.13 Aligned_cols=84 Identities=8% Similarity=-0.044 Sum_probs=56.6
Q ss_pred ECcChHHHHHHHHHhcCCCEEEEEECcc---ccccchHHHHHHHHHhCCCeEEEEeCc-cc-CCC---HHHHHHHHHHhH
Q psy2427 33 IGPGVTREVGMDMVNMKAQRVCVMTDPH---LSKLAPVKATLDSLTRHGVKFELFDKV-RV-EPT---GDSFLEATKFVR 104 (660)
Q Consensus 33 ~G~g~~~~l~~~l~~~g~~r~liVtd~~---~~~~~~~~~i~~~L~~~gi~~~~~~~~-~~-~p~---~~~v~~~~~~~~ 104 (660)
++.-.+.+.-+.+++.|++-+=+..+.. .......+++++.+++.|+.+..+... .. .+. .+.+.+.++.+.
T Consensus 16 ~~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~ 95 (272)
T 2q02_A 16 APGLSIEAFFRLVKRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLEIVTINAVYPFNQLTEEVVKKTEGLLRDAQ 95 (272)
T ss_dssp CTTSCHHHHHHHHHHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHHTTCEEEEEEEETTTTSCCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHcCCCEEEeeccccccccccccCHHHHHHHHHHcCCeEEechhhhccCCcHHHHHHHHHHHHHHHH
Confidence 3444567777788999988777664321 111234588999999999988544321 11 122 456788888999
Q ss_pred hcCCCEEEEecC
Q psy2427 105 SVQCDAFIAVGG 116 (660)
Q Consensus 105 ~~~~D~IIavGG 116 (660)
+.+++.|+..+|
T Consensus 96 ~lG~~~v~~~~g 107 (272)
T 2q02_A 96 GVGARALVLCPL 107 (272)
T ss_dssp HHTCSEEEECCC
T ss_pred HhCCCEEEEccC
Confidence 999999887655
No 459
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=20.38 E-value=2.9e+02 Score=29.98 Aligned_cols=43 Identities=7% Similarity=-0.011 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEE
Q psy2427 38 TREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE 82 (660)
Q Consensus 38 ~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~ 82 (660)
++++.+.|.+ .+|++|+.|.........+.+.+..++.|+.+.
T Consensus 199 i~~~~~~l~~--a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~ 241 (566)
T 2vbi_A 199 VDATVALLEK--SASPVMLLGSKLRAANALAATETLADKLQCAVT 241 (566)
T ss_dssp HHHHHHHHHT--CSCEEEEECTTTTTTTCHHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHh--CCCCEEEECcCccccchHHHHHHHHHHhCCCEE
Confidence 4445555544 489999999987665556778887777788775
No 460
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A
Probab=20.34 E-value=2.1e+02 Score=29.76 Aligned_cols=73 Identities=18% Similarity=0.244 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcc-cCCCHHHHHHHHHHhHhcCCCEEEEecC
Q psy2427 38 TREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR-VEPTGDSFLEATKFVRSVQCDAFIAVGG 116 (660)
Q Consensus 38 ~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~-~~p~~~~v~~~~~~~~~~~~D~IIavGG 116 (660)
++++..++++.|++|+.+=.-.++... ...+.+.|++.++++.+..++. +.|..+++. ++..++|+||=.|=
T Consensus 43 i~kti~~I~~~~~krVaLQfPdgLl~~--a~~Ia~~L~~~~~e~~IlgDttYGACCVDe~a-----A~~v~aD~lVHyGH 115 (378)
T 3lzd_A 43 KSEILKELKRIGAKRVLIQSPEGLRRE--AEELAGFLEENNIEVFLHGEINYGACDPADRE-----AKLVGCDALIHLGH 115 (378)
T ss_dssp HHHHHHHHHHTTCCEEEEECCGGGHHH--HHHHHHHHHTTTCEEEEECSCCCCTTSCCHHH-----HHHTTCSEEEEEEC
T ss_pred HHHHHHHHHhcCCCEEEEECCHHHHHH--HHHHHHHHhhcCceEEEEcCCcccCcccCHHH-----HhhcCCCEEEEcCC
Confidence 467778889999999998776666543 2567778877788887765432 344444432 46778999999875
Q ss_pred c
Q psy2427 117 G 117 (660)
Q Consensus 117 G 117 (660)
-
T Consensus 116 s 116 (378)
T 3lzd_A 116 S 116 (378)
T ss_dssp C
T ss_pred C
Confidence 4
No 461
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0
Probab=20.21 E-value=3.9e+02 Score=25.68 Aligned_cols=89 Identities=15% Similarity=0.083 Sum_probs=55.5
Q ss_pred EECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCC-HHHHHHHHHHhHhcCCCE
Q psy2427 32 RIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPT-GDSFLEATKFVRSVQCDA 110 (660)
Q Consensus 32 ~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~-~~~v~~~~~~~~~~~~D~ 110 (660)
+-|.-.+...-+.+.+.|.++++|+|+. +++.+.+++.|+.+. +.. +.+++ .+.+.++++.+...+.|.
T Consensus 31 i~GkPli~~~l~~l~~~~i~~VvVvt~~--------~~i~~~~~~~g~~v~-~~~-~~~~~Gt~~i~~a~~~l~~~~~d~ 100 (256)
T 3tqd_A 31 IAGKPMIQHVYESAIKSGAEEVVIATDD--------KRIRQVAEDFGAVVC-MTS-SDHQSGTERIAEAAVALGFEDDEI 100 (256)
T ss_dssp ETTEEHHHHHHHHHHHTTCSEEEEEESC--------HHHHHHHHHTTCEEE-ECC-TTCCSHHHHHHHHHHHTTCCTTCE
T ss_pred ECCchHHHHHHHHHHhCCCCEEEEECCH--------HHHHHHHHHcCCeEE-EeC-CCCCCcHHHHHHHHHHhCcCCCCE
Confidence 4577778887777887788999999862 456666767788765 321 22232 344555555443225688
Q ss_pred EEEecCchh----hhHHHHHHhHh
Q psy2427 111 FIAVGGGSV----IDTCKAANLYY 130 (660)
Q Consensus 111 IIavGGGsv----iD~AK~~a~~~ 130 (660)
|+-+-|=.. -++.+++....
T Consensus 101 vlv~~gD~Pli~~~~i~~li~~~~ 124 (256)
T 3tqd_A 101 IVCLQGDEPLIPPDAIRKLAEDLD 124 (256)
T ss_dssp EEEECTTCCCCCHHHHHHHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHH
Confidence 888877763 35556665544
No 462
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=20.17 E-value=1.2e+02 Score=31.65 Aligned_cols=25 Identities=8% Similarity=0.105 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 93 GDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 93 ~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
...+.++.+.+++.++|+|+.+|+-
T Consensus 100 ~~~~~~l~~~l~~~kPD~Vi~~gd~ 124 (403)
T 3ot5_A 100 SRVMNGINEVIAAENPDIVLVHGDT 124 (403)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEETTC
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCc
Confidence 4466777888899999999999974
No 463
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=20.17 E-value=2.4e+02 Score=28.14 Aligned_cols=85 Identities=8% Similarity=-0.053 Sum_probs=48.6
Q ss_pred HHHHHHHHhcCCCEEEEEECccccc--cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh-cCCCEEEEec
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSK--LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS-VQCDAFIAVG 115 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~--~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~D~IIavG 115 (660)
..+.++|.+.|.+|+.+|+++.-.. ....+-+.+.|++.|++..+. ...+.+.+...++++.+.+ ..+ +|++..
T Consensus 173 ~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~v--~~~~~~~~~~~~~~~~ll~~~~~-ai~~~n 249 (348)
T 3bil_A 173 AAAVELLAHNNALPIGYLSGPMDTSTGRERLEDFKAACANSKIGEQLV--FLGGYEQSVGFEGATKLLDQGAK-TLFAGD 249 (348)
T ss_dssp HHHHHHHHHTTCCSEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCEE--ECCCSSHHHHHHHHHHHHHTTCS-EEEESS
T ss_pred HHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHcCcCccEE--EcCCCCHHHHHHHHHHHHcCCCC-EEEEcC
Confidence 4567788888999999998763211 112345667888888632211 1223455555555554443 337 888765
Q ss_pred CchhhhHHHHH
Q psy2427 116 GGSVIDTCKAA 126 (660)
Q Consensus 116 GGsviD~AK~~ 126 (660)
...++-+.+++
T Consensus 250 D~~A~g~~~al 260 (348)
T 3bil_A 250 SMMTIGVIEAC 260 (348)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 55444444433
No 464
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=20.10 E-value=5e+02 Score=24.60 Aligned_cols=72 Identities=14% Similarity=0.046 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc--CCCEEEEecC
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV--QCDAFIAVGG 116 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~D~IIavGG 116 (660)
..+...|.+.| -+++++.+..... .+.+.+.+++.+..+..+.. .-.+.+.++++++.+.+. ++|.||-.-|
T Consensus 40 ~a~a~~l~~~G-~~V~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--Dl~~~~~v~~~~~~~~~~~g~id~li~nAg 113 (272)
T 4e3z_A 40 AAVCRLAARQG-WRVGVNYAANREA---ADAVVAAITESGGEAVAIPG--DVGNAADIAAMFSAVDRQFGRLDGLVNNAG 113 (272)
T ss_dssp HHHHHHHHHTT-CEEEEEESSCHHH---HHHHHHHHHHTTCEEEEEEC--CTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHCC-CEEEEEcCCChhH---HHHHHHHHHhcCCcEEEEEc--CCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence 44666777778 4666665655332 36677777776666554421 234577888888877653 7899887655
Done!