RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2427
(660 letters)
>gnl|CDD|173949 cd08190, HOT, Hydroxyacid-oxoacid transhydrogenase (HOT) involved
in gamma-hydroxybutyrate metabolism.
Hydroxyacid-oxoacid transhydrogenase (HOT), also known
as D-2-hydroxyglutarate transhydrogenase. It catalyzes
the conversion of gamma-hydroxybutyrate (GHB) to
succinic semialdehyde (SSA), coupled to the
stoichiometric conversion of alpha-ketoglutarate to
D-2-hydroxyglutarate in gamma-Hydroxybutyrate
catabolism. Unlike many other alcohols, which are
oxidized by NAD-linked dehydrogenases,
gamma-hydroxybutyrate is metabolized to succinate
semialdehyde by hydroxyacid-oxoacid transhydrogenase
which does not require free NAD or NADP, but instead
using alpha -ketoglutarate as an acceptor, converting it
to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as
an intermediate acceptor to regenerate NAD(P) required
for the oxidation of GHB. HOT also catalyzes the
reversible oxidation of a hydroxyacid obligatorily
coupled to the reduction of an oxoacid, and requires no
cofactor. In mammals, the HOT enzyme is located in
mitochondria, and is expressed with an N-terminal
mitochondrial targeting sequence. HOT enzyme is member
of the metal-containing alcohol dehydrogenase family.
They typically contain an iron although other metal ions
may be used.
Length = 414
Score = 644 bits (1664), Expect = 0.0
Identities = 232/355 (65%), Positives = 283/355 (79%)
Query: 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR 88
S IR GPGVT EVGMD+ N+ A+RVC++TDP+L++L PVK LDSL G+ FE++D VR
Sbjct: 2 SNIRFGPGVTAEVGMDLKNLGARRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVR 61
Query: 89 VEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKG 148
VEPT +SF +A F + Q DAF+AVGGGSVIDT KAANLY P+A+FLDYVNAPIGKG
Sbjct: 62 VEPTDESFKDAIAFAKKGQFDAFVAVGGGSVIDTAKAANLYASHPDADFLDYVNAPIGKG 121
Query: 149 KPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSL 208
KP PLKPLIAIPTT+GTGSETTGV+IFD LKAKTGIA+RALKPTLG++DPL+TL++
Sbjct: 122 KPPPGPLKPLIAIPTTAGTGSETTGVAIFDLPELKAKTGIASRALKPTLGIVDPLNTLTM 181
Query: 209 PERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIR 268
P RVTA SG DV CHALES+TA+PY +R P P++P+ RPAYQG NP+SD+W+ AL+ +
Sbjct: 182 PSRVTASSGLDVLCHALESYTAIPYNQRPPRPSNPIQRPAYQGSNPISDIWSLQALRIVG 241
Query: 269 QYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDD 328
+Y +RAV + DDLEARS MHLAS AG+GFGNAGVHLCHG+SYPI+G VK + Y D
Sbjct: 242 KYLRRAVADPDDLEARSQMHLASTFAGIGFGNAGVHLCHGMSYPIAGLVKDYKAPDYPVD 301
Query: 329 HPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGT 383
HP++PHGLSVV++APAVF FTA + PERH+EAAE+LGAD S K DA +
Sbjct: 302 HPLVPHGLSVVVTAPAVFRFTAPACPERHLEAAEILGADTSNAKIEDAGEVLADA 356
Score = 517 bits (1334), Expect = e-180
Identities = 184/282 (65%), Positives = 226/282 (80%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
A+PTT+GTGSETTGV+IFD LKAKTGIA+RALKPTLG++DPL+TL++P RVTA SG D
Sbjct: 133 AIPTTAGTGSETTGVAIFDLPELKAKTGIASRALKPTLGIVDPLNTLTMPSRVTASSGLD 192
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
V CHALES+TA+PY +R P P++P+ RPAYQG NP+SD+W+ AL+ + +Y +RAV + D
Sbjct: 193 VLCHALESYTAIPYNQRPPRPSNPIQRPAYQGSNPISDIWSLQALRIVGKYLRRAVADPD 252
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
DLEARS MHLAS AG+GFGNAGVHLCHG+SYPI+G VK + Y DHP++PHGLSVV
Sbjct: 253 DLEARSQMHLASTFAGIGFGNAGVHLCHGMSYPIAGLVKDYKAPDYPVDHPLVPHGLSVV 312
Query: 556 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKV 615
++APAVF FTA + PERH+EAAE+LGAD S K DAG++LAD +R M + + +GL
Sbjct: 313 VTAPAVFRFTAPACPERHLEAAEILGADTSNAKIEDAGEVLADALRKLMRDLGVPDGLAA 372
Query: 616 LGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSM 657
LGYT +DIPALV GTLPQ R+ KLAPR EEDLA LFE SM
Sbjct: 373 LGYTESDIPALVKGTLPQQRVLKLAPRPVDEEDLAALFEESM 414
>gnl|CDD|173961 cd08551, Fe-ADH, iron-containing alcohol dehydrogenases
(Fe-ADH)-like. Large metal-containing alcohol
dehydrogenases (ADH), known as iron-containing alcohol
dehydrogenases. They contain a dehydroquinate
synthase-like protein structural fold and mostly contain
iron. They are distinct from other alcohol
dehydrogenases which contains different protein domains.
There are several distinct families of alcohol
dehydrogenases: Zinc-containing long-chain alcohol
dehydrogenases; insect-type, or short-chain alcohol
dehydrogenases; iron-containing alcohol dehydrogenases,
and others. The iron-containing family has a Rossmann
fold-like topology that resembles the fold of the
zinc-dependent alcohol dehydrogenases, but lacks
sequence homology, and differs in strand arrangement.
ADH catalyzes the reversible oxidation of alcohol to
acetaldehyde with the simultaneous reduction of NAD(P)+
to NAD(P)H.
Length = 370
Score = 312 bits (802), Expect = e-101
Identities = 120/349 (34%), Positives = 172/349 (49%), Gaps = 41/349 (11%)
Query: 30 TIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRV 89
I G G ++G ++ N+ ++ ++TDP L K + +DSL G++ +FD V
Sbjct: 3 RIIFGAGAIEKLGEEIKNLGGRKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEP 62
Query: 90 EPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGK 149
PT + A R CD IAVGGGSV+DT KA L +P + GK
Sbjct: 63 NPTLSNVDAAVAAYREEGCDGVIAVGGGSVLDTAKAIALLATNPGDIWDYE------GGK 116
Query: 150 PVTVPLKPLIAIPTTSGTGSETTGVS-IFDYEPLKAKTGIANRALKPTLGLIDPLHTLSL 208
PV P PLIAIPTT+GTGSE T + I D E K GIA+ L P + ++DP T +L
Sbjct: 117 PVIKPALPLIAIPTTAGTGSEVTPFAVITDEET-GEKYGIASPELLPDVAILDPELTYTL 175
Query: 209 PERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIR 268
P +TA +G D HA+E++ + NP+SD A A++ I
Sbjct: 176 PPALTAATGMDALTHAIEAYVSRKA-------------------NPISDALAIKAIRLIA 216
Query: 269 QYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDD 328
+ +AV DLEAR M LAS +AG+ F NAG+ H +++P+ +H
Sbjct: 217 KNLPKAVKEGGDLEAREKMALASTLAGMAFSNAGLGAVHAMAHPLGAL---YH------- 266
Query: 329 HPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAV 377
IPHGL+ + P V F A + PE++ + A +G VS +A
Sbjct: 267 ---IPHGLANAILLPHVMRFNAEAIPEKYADIARAMG-KVSGGSDDEAA 311
Score = 226 bits (577), Expect = 7e-68
Identities = 86/279 (30%), Positives = 130/279 (46%), Gaps = 36/279 (12%)
Query: 376 AVPTTSGTGSETTGVS-IFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGF 434
A+PTT+GTGSE T + I D E K GIA+ L P + ++DP T +LP +TA +G
Sbjct: 127 AIPTTAGTGSEVTPFAVITDEET-GEKYGIASPELLPDVAILDPELTYTLPPALTAATGM 185
Query: 435 DVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQ 494
D HA+E++ + NP+SD A A++ I + +AV
Sbjct: 186 DALTHAIEAYVSRKA-------------------NPISDALAIKAIRLIAKNLPKAVKEG 226
Query: 495 DDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSV 554
DLEAR M LAS +AG+ F NAG+ H +++P+ +H IPHGL+
Sbjct: 227 GDLEAREKMALASTLAGMAFSNAGLGAVHAMAHPLGAL---YH----------IPHGLAN 273
Query: 555 VMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLK 614
+ P V F A + PE++ + A +G VS +A +R ++ I L
Sbjct: 274 AILLPHVMRFNAEAIPEKYADIARAMG-KVSGGSDDEAANAAIAAIRKLNKELGIPTSLA 332
Query: 615 VLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLF 653
LG DI L + + PR + ED+ ++
Sbjct: 333 DLGVKEEDIDKLAELAMEDACLLNN-PRIITREDIREIY 370
>gnl|CDD|215932 pfam00465, Fe-ADH, Iron-containing alcohol dehydrogenase.
Length = 323
Score = 262 bits (672), Expect = 3e-82
Identities = 114/319 (35%), Positives = 162/319 (50%), Gaps = 40/319 (12%)
Query: 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR 88
+ I G G E+G ++ + R ++TDP L KL + LDSL G++ +FD V
Sbjct: 2 TRIVFGEGALEELGEELKRLG--RALIVTDPSLKKLGLLDKVLDSLEEAGIEVVVFDGVE 59
Query: 89 VEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKG 148
PT + EA R D IAVGGGSVIDT KA L +P + G
Sbjct: 60 PNPTLEEVDEAAAAAREEGADVIIAVGGGSVIDTAKAIALLATNPGDVWDYL------GG 113
Query: 149 KPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSL 208
K + P PLIAIPTT+GTGSE T +++ E K GI + L P L ++DP TL+L
Sbjct: 114 KKLPKPALPLIAIPTTAGTGSEVTPLAVITDEEGGFKMGIGSPKLLPDLAIVDPELTLTL 173
Query: 209 PERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIR 268
P R+TA +G D HA+E++ + +G NP++D A A++ I
Sbjct: 174 PPRLTAATGMDALAHAIEAYVS-------------------KGANPLTDALALEAIRLIA 214
Query: 269 QYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDD 328
+ RAV + +DLEAR++M LAS +AG+ F NAG+ H L++ + G FH
Sbjct: 215 ENLPRAVADPEDLEARANMLLASTLAGLAFSNAGLGAAHALAHALGG---LFH------- 264
Query: 329 HPIIPHGLSVVMSAPAVFN 347
IPHG + + P +
Sbjct: 265 ---IPHGEANAILLPELLR 280
Score = 170 bits (433), Expect = 9e-48
Identities = 77/274 (28%), Positives = 116/274 (42%), Gaps = 75/274 (27%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
A+PTT+GTGSE T +++ E K GI + L P L ++DP TL+LP R+TA +G D
Sbjct: 125 AIPTTAGTGSEVTPLAVITDEEGGFKMGIGSPKLLPDLAIVDPELTLTLPPRLTAATGMD 184
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
HA+E++ + +G NP++D A A++ I + RAV + +
Sbjct: 185 ALAHAIEAYVS-------------------KGANPLTDALALEAIRLIAENLPRAVADPE 225
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
DLEAR++M LAS +AG+ F NAG+ H L++ + G FH IPHG +
Sbjct: 226 DLEARANMLLASTLAGLAFSNAGLGAAHALAHALGG---LFH----------IPHGEANA 272
Query: 556 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKV 615
+ P + + + L
Sbjct: 273 ILLPELL------------------------------------------RDLGLPTSLSD 290
Query: 616 LGYTSADIPALVTGTLPQHRITKLAPREQSEEDL 649
LG T D+ L L PR + ED+
Sbjct: 291 LGITEEDLDKLAEAALRDGC-LLTNPRPLTAEDV 323
>gnl|CDD|224371 COG1454, EutG, Alcohol dehydrogenase, class IV [Energy production
and conversion].
Length = 377
Score = 257 bits (659), Expect = 9e-80
Identities = 126/356 (35%), Positives = 180/356 (50%), Gaps = 40/356 (11%)
Query: 23 AFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE 82
+ + I G G +E+G ++ + A+R ++TD L+KL + LDSL G+++E
Sbjct: 2 NWFYLPTEILFGRGSLKELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYE 61
Query: 83 LFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKA-ANLYYCDPEAEFLDYV 141
+FD+V EPT ++ + R D IA+GGGSVID KA A L LDY
Sbjct: 62 VFDEVEPEPTIETVEAGAEVAREFGPDTIIALGGGSVIDAAKAIALLAENPGSV--LDYE 119
Query: 142 NAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLID 201
IGK K P PLIAIPTT+GTGSE T ++ E K IA+ L P + ++D
Sbjct: 120 G--IGKVKK---PKAPLIAIPTTAGTGSEVTPFAVITDEETGVKYAIADPELLPDVAILD 174
Query: 202 PLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWAR 261
P TL +P +TA +G D HA+E++ + NP++D A
Sbjct: 175 PELTLGMPPSLTAATGMDALTHAIEAYVSP-------------------AANPITDALAL 215
Query: 262 FALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFH 321
A++ I +Y RAV + DDLEAR MHLA+ +AG+ F NAG+ L H L++P+ FH
Sbjct: 216 EAIKLIFEYLPRAVADGDDLEAREKMHLAATLAGMAFANAGLGLVHALAHPLGA---LFH 272
Query: 322 PAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAV 377
IPHGL+ + P V F A ++PER+ A LG +
Sbjct: 273 ----------IPHGLANAILLPYVIRFNAEAAPERYARIARALGLPGEGDAADALI 318
Score = 194 bits (496), Expect = 4e-56
Identities = 97/296 (32%), Positives = 143/296 (48%), Gaps = 41/296 (13%)
Query: 366 ADVSRVKKAD----AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHT 421
+ +VKK A+PTT+GTGSE T ++ E K IA+ L P + ++DP T
Sbjct: 119 EGIGKVKKPKAPLIAIPTTAGTGSEVTPFAVITDEETGVKYAIADPELLPDVAILDPELT 178
Query: 422 LSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQ 481
L +P +TA +G D HA+E++ + NP++D A A++
Sbjct: 179 LGMPPSLTAATGMDALTHAIEAYVSP-------------------AANPITDALALEAIK 219
Query: 482 TIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGY 541
I +Y RAV + DDLEAR MHLA+ +AG+ F NAG+ L H L++P+ FH
Sbjct: 220 LIFEYLPRAVADGDDLEAREKMHLAATLAGMAFANAGLGLVHALAHPLGA---LFH---- 272
Query: 542 SDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVR 601
IPHGL+ + P V F A ++PER+ A LG DA L D +R
Sbjct: 273 ------IPHGLANAILLPYVIRFNAEAAPERYARIARALGLPGEG----DAADALIDALR 322
Query: 602 GYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSM 657
++++ I L+ LG DI L L T PR + ED+ ++E +
Sbjct: 323 ELLERLGIPKRLRDLGVKEEDIDKLAEDALAD-PCTATNPRPPTREDIKEIYEAAY 377
>gnl|CDD|173953 cd08194, Fe-ADH6, Iron-containing alcohol dehydrogenases-like.
Iron-containing alcohol dehydrogenase-like. Proteins of
this family have not been characterized. Their specific
function is unknown. The protein structure represents a
dehydroquinate synthase-like fold and belongs to the
alcohol dehydrogenase-like superfamily. They are
distinct from other alcohol dehydrogenases which contain
different protein domains. Alcohol dehydrogenase
catalyzes the reduction of acetaldehyde to alcohol with
NADP as cofactor. Its activity requires iron ions.
Length = 375
Score = 232 bits (593), Expect = 4e-70
Identities = 121/347 (34%), Positives = 168/347 (48%), Gaps = 38/347 (10%)
Query: 30 TIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRV 89
TI IG G E G + ++ +R ++TD + KL V DSL + G++ +FD V
Sbjct: 3 TIIIGEGAVDETGAVLADLGGKRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVS 62
Query: 90 EPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGK 149
EPT +S E K + CD IA+GGGS IDT KA + DY +
Sbjct: 63 EPTDESVEEGVKLAKEGGCDVIIALGGGSPIDTAKAIAVL-ATNGGSIRDYK-----GPR 116
Query: 150 PVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLP 209
V P PLIAIPTT+GTGSE T ++ K + AL P ++DP TL+ P
Sbjct: 117 IVDKPGLPLIAIPTTAGTGSEVTRFTVITDTKTDEKMLLKGLALLPKAAIVDPELTLTSP 176
Query: 210 ERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQ 269
RVTA +G D HA+E++ + R A P++D++A A++ I +
Sbjct: 177 PRVTAATGIDALTHAIEAYVS---------------RKA----QPMTDLFALSAIKLIGK 217
Query: 270 YFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDH 329
+ A N D+ EAR M L + AG+ F NA V L HG+S PI FH
Sbjct: 218 NLRTAYLNPDNREAREEMMLGATEAGIAFSNASVALVHGMSRPIGAL---FH-------- 266
Query: 330 PIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADA 376
+PHGLS M PAV F+ S+PER+ + A +G +A
Sbjct: 267 --VPHGLSNAMLLPAVTEFSLPSAPERYADIARAMGEANEGDSDREA 311
Score = 161 bits (410), Expect = 6e-44
Identities = 79/252 (31%), Positives = 121/252 (48%), Gaps = 33/252 (13%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
A+PTT+GTGSE T ++ K + AL P ++DP TL+ P RVTA +G D
Sbjct: 127 AIPTTAGTGSEVTRFTVITDTKTDEKMLLKGLALLPKAAIVDPELTLTSPPRVTAATGID 186
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
HA+E++ + R A P++D++A A++ I + + A N D
Sbjct: 187 ALTHAIEAYVS---------------RKA----QPMTDLFALSAIKLIGKNLRTAYLNPD 227
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
+ EAR M L + AG+ F NA V L HG+S PI FH +PHGLS
Sbjct: 228 NREAREEMMLGATEAGIAFSNASVALVHGMSRPIGAL---FH----------VPHGLSNA 274
Query: 556 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKV 615
M PAV F+ S+PER+ + A +G +A + L + ++ ++++ L+
Sbjct: 275 MLLPAVTEFSLPSAPERYADIARAMGEANEGDSDREAAEKLIEALKELNRELEVPT-LRE 333
Query: 616 LGYTSADIPALV 627
G AL+
Sbjct: 334 YGIDKDAFMALI 345
>gnl|CDD|173944 cd08185, Fe-ADH1, Iron-containing alcohol dehydrogenases-like.
Iron-containing alcohol dehydrogenases-like (ADH).
Alcohol dehydrogenase catalyzes the reduction of
acetaldehyde to alcohol with NADP as cofactor. Its
activity requires iron ions. The protein structure
represents a dehydroquinate synthase fold and is a
member of the iron-containing alcohol dehydrogenase-like
family. They are distinct from other alcohol
dehydrogenases which contain different protein domains.
Proteins of this family have not been characterized.
Their specific function is unknown. They are present in
bacteria and archaea.
Length = 380
Score = 220 bits (564), Expect = 9e-66
Identities = 109/345 (31%), Positives = 162/345 (46%), Gaps = 34/345 (9%)
Query: 31 IRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPV-KATLDSLTRHGVKFELFDKVRV 89
I G G E+G + ++ ++T SK ++ L + GV+ +FDKV
Sbjct: 7 IVFGAGKLNELG-EEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEP 65
Query: 90 EPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGK 149
PT + +E R CD + +GGGS +DT KA E ++ DY+ GKGK
Sbjct: 66 NPTTTTVMEGAALAREEGCDFVVGLGGGSSMDTAKAIAFMAA-NEGDYWDYIFGGTGKGK 124
Query: 150 PVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLP 209
P P+IAI TT+GTGSE ++ K K G+ + A P + ++DP L++P
Sbjct: 125 PPPEKALPIIAITTTAGTGSEADPWAVITNPETKEKIGLGHPATFPKISIVDPELMLTVP 184
Query: 210 ERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQ 269
+TAY+GFD F HA E++ A NP+SD+ A A++ I +
Sbjct: 185 PHLTAYTGFDAFFHAFEAYIA-------NNA------------NPMSDMLALEAIELIAK 225
Query: 270 YFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDH 329
Y RAV + DLEAR M A+ + G+ N+G H L + +SG HP
Sbjct: 226 YLPRAVKDGSDLEAREKMAWANTLGGMVEANSGCTSPHALEHALSG----LHPD------ 275
Query: 330 PIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKA 374
+PHG + M +PA F F A +PE+ A A + + A
Sbjct: 276 --LPHGAGLAMLSPAYFEFFARKAPEKFAFVARAEAAGLEDEEAA 318
Score = 164 bits (417), Expect = 6e-45
Identities = 83/280 (29%), Positives = 135/280 (48%), Gaps = 35/280 (12%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
A+ TT+GTGSE ++ K K G+ + A P + ++DP L++P +TAY+GFD
Sbjct: 135 AITTTAGTGSEADPWAVITNPETKEKIGLGHPATFPKISIVDPELMLTVPPHLTAYTGFD 194
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
F HA E++ A NP+SD+ A A++ I +Y RAV +
Sbjct: 195 AFFHAFEAYIA-------NNA------------NPMSDMLALEAIELIAKYLPRAVKDGS 235
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
DLEAR M A+ + G+ N+G H L + +SG HP +PHG +
Sbjct: 236 DLEAREKMAWANTLGGMVEANSGCTSPHALEHALSG----LHPD--------LPHGAGLA 283
Query: 556 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKV 615
M +PA F F A +PE+ A A+ + ++ +A + + +R + ++ +++ L
Sbjct: 284 MLSPAYFEFFARKAPEKFAFVAR---AEAAGLEDEEAAEDFIEALRKLLKRIGLDDLLSD 340
Query: 616 LGYTSADIPALV-TGTLPQHRITKLAPREQSEEDLANLFE 654
LG T DIP L + + P E + ED+ ++E
Sbjct: 341 LGVTKEDIPKLADNARETMGGLFEADPAELTREDIEEIYE 380
>gnl|CDD|173950 cd08191, HHD, 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the
oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
6-hydroxyhexanoate dehydrogenase (HHD). The
6-hydroxyhexanoate dehydrogenase catalyzes the oxidation
of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria
can grow on cyclic ketones, cyclohexylamine, and
alcohols as sole carbon source. Cyclohexylamine is an
insecticide and antiseptic in various industries and is
considered a possible environmental pollutant. The
degradation of these chemical compounds are through the
cyclohexanol and cyclohexanone biological oxidation
pathway. The intermediates of this pathway include
cyclohexanol, cyclohexanone, e-caprolactone,
6-hydroxyhexanoate, 6-oxohexanoate and adipate. The
6-hydroxyhexanoate dehydrogenase catalyzes the oxidation
of 6-hydroxyhexanoate to 6-oxohexanoate.
Length = 386
Score = 220 bits (562), Expect = 2e-65
Identities = 111/341 (32%), Positives = 156/341 (45%), Gaps = 24/341 (7%)
Query: 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR 88
T+ G G R++ + R ++TD ++ + +L GV+ E+FD V
Sbjct: 2 GTLLFGAGQRRQLP-RLAARLGSRALIVTDERMAGTPVFAELVQALAAAGVEVEVFDGVL 60
Query: 89 VEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKG 148
+ +A D I +GGGS ID K A L + DY G
Sbjct: 61 PDLPRSELCDAASAAARAGPDVIIGLGGGSCIDLAKIAGLLLAHG-GDVRDYYGEFKVPG 119
Query: 149 KPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSL 208
+ PLIA+PTT+GTGSE T V++ K G+A+ L+P + +IDP TL+
Sbjct: 120 PVL-----PLIAVPTTAGTGSEVTPVAVLTDPDNAMKVGVASPHLRPAIAIIDPELTLTC 174
Query: 209 PERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIR 268
P VTA SG D HA+ESFTA+ R P P Y G+N ++D++AR A++ I
Sbjct: 175 PPGVTADSGADALTHAIESFTAMD---RNPFPDGD-ADHVYSGKNALTDLFAREAIRLIG 230
Query: 269 QYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDD 328
+ RAV + DDLEAR+ M LA+ +AG+ FG AG H L YP+ T
Sbjct: 231 RSLPRAVRDGDDLEARTDMMLAALLAGLAFGTAGTAAVHALQYPVGALTHT--------- 281
Query: 329 HPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVS 369
HG V P V F + E E +LG
Sbjct: 282 ----SHGFGVAALLPYVMRFNLPARREEFAEIGRVLGVAAG 318
Score = 181 bits (461), Expect = 4e-51
Identities = 96/275 (34%), Positives = 129/275 (46%), Gaps = 17/275 (6%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
AVPTT+GTGSE T V++ K G+A+ L+P + +IDP TL+ P VTA SG D
Sbjct: 126 AVPTTAGTGSEVTPVAVLTDPDNAMKVGVASPHLRPAIAIIDPELTLTCPPGVTADSGAD 185
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
HA+ESFTA+ R P P Y G+N ++D++AR A++ I + RAV + D
Sbjct: 186 ALTHAIESFTAMD---RNPFPDGD-ADHVYSGKNALTDLFAREAIRLIGRSLPRAVRDGD 241
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
DLEAR+ M LA+ +AG+ FG AG H L YP+ T HG V
Sbjct: 242 DLEARTDMMLAALLAGLAFGTAGTAAVHALQYPVGALTHT-------------SHGFGVA 288
Query: 556 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKV 615
P V F + E E +LG + V + + I L
Sbjct: 289 ALLPYVMRFNLPARREEFAEIGRVLGVAAGDHSADEQAAAAITRVEALLAAIGIPTTLAA 348
Query: 616 LGYTSADIPALVTGTLPQHRITKLAPREQSEEDLA 650
LG T AD+ + L R+ K PR EED
Sbjct: 349 LGVTEADLDGVAAQALAVTRLIKNNPRPLDEEDYR 383
>gnl|CDD|173952 cd08193, HVD, 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the
oxidation of 5-hydroxyvalerate to 5-oxovalerate with
NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD)
is an iron-containing (type III) NAD-dependent alcohol
dehydrogenase. It plays a role in the cyclopentanol
metabolism biochemical pathway. It catalyzes the
oxidation of 5-hydroxyvalerate to 5-oxovalerate with
NAD+ as cofactor. This cyclopentanol (cpn) degradation
pathway is present in some bacteria which can use
cyclopentanol as sole carbon source. In Comamonas sp.
strain NCIMB 9872, this enzyme is encoded by the CpnD
gene.
Length = 376
Score = 211 bits (540), Expect = 2e-62
Identities = 120/354 (33%), Positives = 168/354 (47%), Gaps = 45/354 (12%)
Query: 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR 88
I G G +G + + A+RV V+TDP + K + L SL G++ +FD V
Sbjct: 5 PRIVFGAGSLARLGELLAALGAKRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVE 64
Query: 89 VEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCK-AANLYYCDPEAEFLDYVNAPIGK 147
+P A + R+ D I GGGS +D K A L + D +
Sbjct: 65 ADPPEAVVEAAVEAARAAGADGVIGFGGGSSMDVAKLVAVL--AGSDQPLADMYGVDLVA 122
Query: 148 GKPVTVPLKPLIAIPTTSGTGSETTGVSIF-DYEPLKAKTGIANRALKPTLGLIDPLHTL 206
G + PLI +PTT+GTGSE T ++I E LK G+ + L P L ++DP TL
Sbjct: 123 GPRL-----PLILVPTTAGTGSEVTPIAIVTTPETLKV--GVVSPHLLPDLAILDPELTL 175
Query: 207 SLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQT 266
LP +TA +G D HA+E++T+ + A NP+SD+ A AL+
Sbjct: 176 GLPPHITAATGIDAMVHAIEAYTS--------------RKKA----NPLSDLLALEALRL 217
Query: 267 IRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYS 326
+ RAV + DDLEAR M L + AG F NA V H L+YP+ G FH
Sbjct: 218 LGANIPRAVKDGDDLEAREAMLLGAMYAGQAFANAPVAAVHALAYPLGG---KFH----- 269
Query: 327 DDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLG---ADVSRVKKADAV 377
IPHGLS + P V F A ++ ER+ E A+ LG A S + A+A+
Sbjct: 270 -----IPHGLSNALVLPHVLRFNAPAAEERYAELADALGPDLAGASDEEAAEAL 318
Score = 171 bits (436), Expect = 1e-47
Identities = 99/279 (35%), Positives = 141/279 (50%), Gaps = 34/279 (12%)
Query: 377 VPTTSGTGSETTGVSIF-DYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
VPTT+GTGSE T ++I E LK G+ + L P L ++DP TL LP +TA +G D
Sbjct: 131 VPTTAGTGSEVTPIAIVTTPETLKV--GVVSPHLLPDLAILDPELTLGLPPHITAATGID 188
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
HA+E++T+ + A NP+SD+ A AL+ + RAV + D
Sbjct: 189 AMVHAIEAYTSR--------------KKA----NPLSDLLALEALRLLGANIPRAVKDGD 230
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
DLEAR M L + AG F NA V H L+YP+ G FH IPHGLS
Sbjct: 231 DLEAREAMLLGAMYAGQAFANAPVAAVHALAYPLGG---KFH----------IPHGLSNA 277
Query: 556 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKV 615
+ P V F A ++ ER+ E A+ LG D++ +A + L D + + + I L+
Sbjct: 278 LVLPHVLRFNAPAAEERYAELADALGPDLAGASDEEAAEALIDAMEALVADLGIPQRLRE 337
Query: 616 LGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFE 654
+G T D+P L + Q R+ PRE +EED ++
Sbjct: 338 VGVTEDDLPMLAEDAMKQTRLLVNNPRELTEEDALAIYR 376
>gnl|CDD|173939 cd08180, PDD, 1,3-propanediol dehydrogenase (PPD) catalyzes the
reduction of 3-hydroxypropionaldehyde (3-HPA) to
1,3-propanediol in glycerol metabolism. 1,3-propanediol
dehydrogenase (PPD) plays a role in glycerol metabolism
of some bacteria in anaerobic conditions. In this
degradation pathway, glycerol is converted in a two-step
process to 1,3-propanediol (1,3-PD) which is then
excreted into the extracellular medium. The first
reaction involves the transformation of glycerol into
3-hydroxypropionaldehyde (3-HPA) by a coenzyme
B-12-dependent dehydratase. The second reaction involves
the dismutation of the 3-hydroxypropionaldehyde (3-HPA)
to 1,3-propanediol by the NADH-linked 1,3-propanediol
dehydrogenase (PPD). The enzyme require iron ion for its
function. Because many genes in this pathway are
present in the pdu (propanediol utilisation) operon,
they are also named pdu genes. PPD is a member of the
iron-containing alcohol dehydrogenase superfamily. The
PPD structure has a dehydroquinate synthase-like fold.
Length = 332
Score = 186 bits (475), Expect = 2e-53
Identities = 91/302 (30%), Positives = 135/302 (44%), Gaps = 50/302 (16%)
Query: 47 NMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV 106
+K +RV ++TDP + K + D L ++ E+F V +P + + K
Sbjct: 19 ELKNKRVLIVTDPFMVKSGMLDKVTDHLDS-SIEVEIFSDVVPDPPIEVVAKGIKKFLDF 77
Query: 107 QCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSG 166
+ D IA+GGGS ID KA +Y+ K IAIPTTSG
Sbjct: 78 KPDIVIALGGGSAIDAAKAI-IYFA----------------KKLGKKKKPLFIAIPTTSG 120
Query: 167 TGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALE 226
TGSE T ++ K + + L P + ++DP ++P VTA +G DV HALE
Sbjct: 121 TGSEVTSFAVITDPETGVKYPLVDDELLPDIAILDPELVKTVPPAVTADTGMDVLTHALE 180
Query: 227 SFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSH 286
++ + N +D A A++ + +Y +A + DDLEAR
Sbjct: 181 AYVS-------------------TDANDFTDALAEKAIKLVFEYLPKAYKDGDDLEAREK 221
Query: 287 MHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVF 346
MH AS MAG+ F NAG+ + H L++ + G FH IPHG + + P V
Sbjct: 222 MHNASCMAGMAFNNAGLGINHSLAHALGG---KFH----------IPHGRANAILLPYVI 268
Query: 347 NF 348
F
Sbjct: 269 EF 270
Score = 142 bits (360), Expect = 1e-37
Identities = 77/283 (27%), Positives = 118/283 (41%), Gaps = 68/283 (24%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
A+PTTSGTGSE T ++ K + + L P + ++DP ++P VTA +G D
Sbjct: 114 AIPTTSGTGSEVTSFAVITDPETGVKYPLVDDELLPDIAILDPELVKTVPPAVTADTGMD 173
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
V HALE++ + N +D A A++ + +Y +A + D
Sbjct: 174 VLTHALEAYVS-------------------TDANDFTDALAEKAIKLVFEYLPKAYKDGD 214
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
DLEAR MH AS MAG+ F NAG+ + H L++ + G FH IPHG +
Sbjct: 215 DLEAREKMHNASCMAGMAFNNAGLGINHSLAHALGG---KFH----------IPHGRANA 261
Query: 556 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKV 615
+ P V F L + ++ ++ I LK
Sbjct: 262 ILLPYVIEF-------------------------------LIEAIKQLKKKLNIPETLKE 290
Query: 616 LGYTSAD----IPALVTGTLPQHRITKLAPREQSEEDLANLFE 654
LG + I + L + T PR+ ++EDL + E
Sbjct: 291 LGVDKEEFEAAIDEMAENAL-KDACTPTNPRKPTKEDLKEILE 332
>gnl|CDD|173935 cd08176, LPO, Lactadehyde:propanediol oxidoreductase (LPO)
catalyzes the interconversion between L-lactaldehyde and
L-1,2-propanediol in Escherichia coli and other
enterobacteria. Lactadehyde:propanediol oxidoreductase
(LPO) is a member of the group III iron-activated
dehydrogenases which catalyze the interconversion
between L-lactaldehyde and L-1,2-propanediol in
Escherichia coli and other enterobacteria. L-Fucose and
L-rhamnose is used by Escherichia coli through an
inducible pathway mediated by the fucose regulon
comprising four linked oeprons fucO, fucA, fucPIK, and
fucR. The fucA-encoded aldolase catalyzes the formation
of dihydroxyacetone phosphate and L-lactaldehyde. Under
anaerobic conditions, with NADH as a cofactor,
lactaldehyde is converted by a fucO-encoded
Lactadehyde:propanediol oxidoreductase (LPO) to
L-1,2-propanediol, which is excreted as a fermentation
product. In mutant strains, E. coli adapted to grow on
L-1,2-propanediol, FucO catalyzes the oxidation of the
polyol to L-lactaldehyde. FucO is induced regardless of
the respiratory conditions of the culture, remains fully
active in the absence of oxygen. In the presence of
oxygen, this enzyme becomes oxidatively inactivated by a
metal-catalyzed oxidation mechanism. FucO is an
iron-dependent metalloenzyme that is inactivated by
other metals, such as zinc, copper, or cadmium. This
enzyme can also reduces glycol aldehyde with similar
efficiency. Beside L-1,2-propanediol, the enzyme is
also able to oxidize methanol as alternative substrates.
Length = 377
Score = 186 bits (475), Expect = 5e-53
Identities = 96/345 (27%), Positives = 159/345 (46%), Gaps = 38/345 (11%)
Query: 33 IGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPT 92
G G +E+G ++ N+ ++ ++TD L K+ V+ D L G+ + ++D V+ PT
Sbjct: 11 FGAGAIKEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPT 70
Query: 93 GDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVT 152
+ + + CD I++GGGS D KA + + + DY + K
Sbjct: 71 ITNVKDGLAVFKKEGCDFIISIGGGSPHDCAKAIGIVATNG-GDIRDY--EGVAK---SK 124
Query: 153 VPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERV 212
P P++AI TT+GT SE T + E K K I + P + + DP + +P +
Sbjct: 125 KPAVPIVAINTTAGTASEVTINYVITDEERKVKMVIVDPNDIPIVAVNDPELMVGMPPGL 184
Query: 213 TAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFK 272
TA +G D HA+E++ + G NP++D A A++ I + +
Sbjct: 185 TAATGMDALTHAIEAYVST-------------------GANPITDACALKAIELIAKNLR 225
Query: 273 RAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPII 332
RAV N DLEAR M A +AG+ F NAG+ H +++ + G + +
Sbjct: 226 RAVANGKDLEAREGMAYAQYLAGMAFNNAGLGYVHSMAHQLGG---FYD----------L 272
Query: 333 PHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAV 377
PHG+ + P V + A + PER + AE +G D + +A
Sbjct: 273 PHGVCNAILLPHVMEYNAPACPERFADIAEAMGVDTEGLSDEEAA 317
Score = 139 bits (352), Expect = 4e-36
Identities = 78/279 (27%), Positives = 127/279 (45%), Gaps = 33/279 (11%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
A+ TT+GT SE T + E K K I + P + + DP + +P +TA +G D
Sbjct: 132 AINTTAGTASEVTINYVITDEERKVKMVIVDPNDIPIVAVNDPELMVGMPPGLTAATGMD 191
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
HA+E++ + G NP++D A A++ I + +RAV N
Sbjct: 192 ALTHAIEAYVST-------------------GANPITDACALKAIELIAKNLRRAVANGK 232
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
DLEAR M A +AG+ F NAG+ H +++ + G + +PHG+
Sbjct: 233 DLEAREGMAYAQYLAGMAFNNAGLGYVHSMAHQLGG---FYD----------LPHGVCNA 279
Query: 556 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKV 615
+ P V + A + PER + AE +G D + +A + D VR + + I GL+
Sbjct: 280 ILLPHVMEYNAPACPERFADIAEAMGVDTEGLSDEEAAEAAIDAVRALSEDVGIPAGLRE 339
Query: 616 LGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFE 654
LG D L L + PR+ ++ED+ +++
Sbjct: 340 LGVKEEDFELLAENAL-KDACAGGNPRKATKEDIIAIYK 377
>gnl|CDD|173937 cd08178, AAD_C, C-terminal alcohol dehydrogenase domain of the
acetaldehyde dehydrogenase-alcohol dehydrogenase
bifunctional two-domain protein (AAD). Alcohol
dehydrogenase domain located on the C-terminal of a
bifunctional two-domain protein. The N-terminal of the
protein contains an acetaldehyde-CoA dehydrogenase
domain. This protein is involved in pyruvate metabolism.
Pyruvate is converted to acetyl-CoA and formate by
pyruvate formate-lysase (PFL). Under anaerobic
condition, acetyl-CoA is reduced to acetaldehyde and
ethanol by this two-domain protein. Acetyl-CoA is first
converted into an enzyme-bound thiohemiacetal by the
N-terminal acetaldehyde dehydrogenase domain. The
enzyme-bound thiohemiacetal is subsequently reduced by
the C-terminal NAD+-dependent alcohol dehydrogenase
domain. In E. coli, this protein is called AdhE and was
shown pyruvate formate-lysase (PFL) deactivase activity,
which is involved in the inactivation of PFL, a key
enzyme in anaerobic metabolism. In Escherichia coli and
Entamoeba histolytica, this enzyme forms homopolymeric
peptides composed of more than 20 protomers associated
in a helical rod-like structure.
Length = 398
Score = 186 bits (475), Expect = 8e-53
Identities = 115/390 (29%), Positives = 172/390 (44%), Gaps = 67/390 (17%)
Query: 35 PGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGD 94
G +D+ K R ++TD + KL V +D L R GV+ E+F V +P+ +
Sbjct: 8 RGSLPYALLDLKGKK--RAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLE 65
Query: 95 SFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVN--APIGK---GK 149
+ + + + S + D IA+GGGS +D K L+Y PE +F D I K
Sbjct: 66 TVRKGLELMNSFKPDTIIALGGGSPMDAAKIMWLFYEHPEVDFEDLAQKFMDIRKRIYKF 125
Query: 150 PVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLP 209
P L+AIPTTSGTGSE T ++ E K +A+ AL P + ++DP +++P
Sbjct: 126 PKLGKKAKLVAIPTTSGTGSEVTPFAVITDEKTGVKYPLADYALTPDMAIVDPELVMTMP 185
Query: 210 ERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQ 269
+ +TA +G D HALE++ ++ ++ T D A A++ I +
Sbjct: 186 KSLTADTGIDALTHALEAYVSVMASDFT-------------------DGLALQAIKLIFE 226
Query: 270 YFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDH 329
Y R+ N D EAR MH A+ +AG+ F NA + +CH +++ + FH
Sbjct: 227 YLPRSYKNGADPEAREKMHNAATIAGMAFANAFLGICHSMAHKLGA---EFH-------- 275
Query: 330 PIIPHGLSVVMSAPAVFNFTAASSP---------------ERHIEAAELLGADVSRVKKA 374
IPHGL+ + P V + A P ER+ E A LG
Sbjct: 276 --IPHGLANAILLPHVIRYNATDPPVKQAAFPQYKYPKAKERYAEIARFLGL-------- 325
Query: 375 DAVPTTSGTGSETTGVSIFDYEPLKAKTGI 404
T E I E LK K GI
Sbjct: 326 -----PGKTDEEKVESLIKAIEELKKKLGI 350
Score = 130 bits (330), Expect = 7e-33
Identities = 72/262 (27%), Positives = 115/262 (43%), Gaps = 49/262 (18%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
A+PTTSGTGSE T ++ E K +A+ AL P + ++DP +++P+ +TA +G D
Sbjct: 136 AIPTTSGTGSEVTPFAVITDEKTGVKYPLADYALTPDMAIVDPELVMTMPKSLTADTGID 195
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
HALE++ ++ ++ T D A A++ I +Y R+ N
Sbjct: 196 ALTHALEAYVSVMASDFT-------------------DGLALQAIKLIFEYLPRSYKNGA 236
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
D EAR MH A+ +AG+ F NA + +CH +++ + FH IPHGL+
Sbjct: 237 DPEAREKMHNAATIAGMAFANAFLGICHSMAHKLGA---EFH----------IPHGLANA 283
Query: 556 MSAPAVFNFTAASSP---------------ERHIEAAELLGADVSRVKKADAGKLLADTV 600
+ P V + A P ER+ E A LG + + L +
Sbjct: 284 ILLPHVIRYNATDPPVKQAAFPQYKYPKAKERYAEIARFLGLPGK--TDEEKVESLIKAI 341
Query: 601 RGYMDQMKIENGLKVLGYTSAD 622
++ I +K G D
Sbjct: 342 EELKKKLGIPKSIKDAGVDEED 363
>gnl|CDD|173941 cd08182, HEPD, Hydroxyethylphosphoate dehydrogenase (HEPD)
catalyzes the reduction of phosphonoacetaldehyde (PnAA)
to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate
dehydrogenase (HEPD) catalyzes the reduction of
phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate
(HEP) with either NADH or NADPH as a cofactor. NADH is
the preferred cofactor. PnAA is a biosynthetic
intermediate for several phosphonates such as the
antibiotic fosfomycin, phosphinothricin tripeptide
(PTT), and 2-aminoethylphosphonate (AEP). This enzyme is
named PhpC in PTT biosynthesis pathway in Streptomyces
hygroscopicus and S. viridochromogenes. Members of this
family are only found in bacteria.
Length = 367
Score = 184 bits (470), Expect = 1e-52
Identities = 94/326 (28%), Positives = 138/326 (42%), Gaps = 37/326 (11%)
Query: 31 IRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVE 90
I G G ++ + + +RV ++T P + + + L L +FD V+
Sbjct: 4 IIFGRGAIAKLPSLLKGLGGKRVLLVTGPRSAIASGLTDILKPLGTL---VVVFDDVQPN 60
Query: 91 PTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKP 150
P + + +R DA +AVGGGSV+DT KA P D K +
Sbjct: 61 PDLEDLAAGIRLLREFGPDAVLAVGGGSVLDTAKALAALLGAPREALEDLRI--RNKERE 118
Query: 151 VTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPE 210
PLIAIPTT+GTGSE T + K +A AL P ++DP TLSLP
Sbjct: 119 NRERALPLIAIPTTAGTGSEVTPFATVWDGKKGIKYSLAGPALYPDTAIVDPELTLSLPP 178
Query: 211 RVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQY 270
TA +G D HA+ES+ + P S +AR A++ I +
Sbjct: 179 YQTASTGLDALAHAIESYWSK-------------------NSTPESRAYARRAIRLILEN 219
Query: 271 FKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHP 330
+ +LEAR+ M AS +AG+ N H +SYP+ T Y
Sbjct: 220 LPPLLDEPGNLEARAKMAEASLLAGLAISNTRTTAAHAISYPL-----TSR---YG---- 267
Query: 331 IIPHGLSVVMSAPAVFNFTAASSPER 356
+PHGL+ ++ PA+ + PE
Sbjct: 268 -VPHGLACALTLPALLRINLEALPED 292
Score = 125 bits (315), Expect = 3e-31
Identities = 79/318 (24%), Positives = 120/318 (37%), Gaps = 41/318 (12%)
Query: 339 VMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKAD--AVPTTSGTGSETTGVSIFDYE 396
V+ + E + +R + A+PTT+GTGSE T +
Sbjct: 89 VLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTTAGTGSEVTPFATVWDG 148
Query: 397 PLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCP 456
K +A AL P ++DP TLSLP TA +G D HA+ES+ +
Sbjct: 149 KKGIKYSLAGPALYPDTAIVDPELTLSLPPYQTASTGLDALAHAIESYWSK--------- 199
Query: 457 TDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGN 516
P S +AR A++ I + + +LEAR+ M AS +AG+ N
Sbjct: 200 ----------NSTPESRAYARRAIRLILENLPPLLDEPGNLEARAKMAEASLLAGLAISN 249
Query: 517 AGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEA 576
H +SYP+ T Y +PHGL+ ++ PA+ + PE
Sbjct: 250 TRTTAAHAISYPL-----TSR---YG-----VPHGLACALTLPALLRINLEALPED---- 292
Query: 577 AELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRI 636
L + A + A + + ++ + L T DI LV R+
Sbjct: 293 --LALEAILAAFGAPSAAEAAARIEALLKELGLPTRLAEYIVTREDIARLVAEAFTPERL 350
Query: 637 TKLAPREQSEEDLANLFE 654
P + E DL L E
Sbjct: 351 -DNNPVDLDEADLERLLE 367
>gnl|CDD|173947 cd08188, Fe-ADH4, Iron-containing alcohol dehydrogenases-like.
Iron-containing alcohol dehydrogenase-like. Alcohol
dehydrogenase catalyzes the reduction of acetaldehyde to
alcohol with NADP as cofactor. Its activity requires
iron ions. The protein structure represents a
dehydroquinate synthase-like fold and is belonged to the
alcohol dehydrogenase-like superfamily. They are
distinct from other alcohol dehydrogenases which contain
different protein domains. Proteins of this family have
not been characterized. Their specific function is
unknown.
Length = 377
Score = 175 bits (446), Expect = 4e-49
Identities = 106/355 (29%), Positives = 164/355 (46%), Gaps = 56/355 (15%)
Query: 31 IRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVE 90
I G G + G + A++V +++DP + K V ++SL G+++ +F V
Sbjct: 9 IIFGRGALKLAGRYARRLGAKKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPN 68
Query: 91 PTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCK-----AANLYYCDPEAEFLDY--VNA 143
P + + + CD IAVGGGS ID K A+N LD+ V+
Sbjct: 69 PRDEEVMAGAELYLENGCDVIIAVGGGSPIDCAKGIGIVASN------GGHILDFEGVDK 122
Query: 144 PIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPL 203
+T PL PLI IPTT+G+G++ + +I K K I +++L P + LIDP
Sbjct: 123 -------ITRPLPPLICIPTTAGSGADVSQFAIITDTERKVKMAIISKSLVPDIALIDPE 175
Query: 204 HTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFA 263
++P +TA +G D HA+E++ + +P++D+ A A
Sbjct: 176 TLTTMPPELTAATGLDALTHAIEAYVSN-------------------ASSPLTDLHALEA 216
Query: 264 LQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPA 323
++ I A+ N DLEAR M LAS AG+ F NA + H +++ +
Sbjct: 217 IRLIAANLPPAIANPTDLEARESMMLASLQAGLAFSNAILGAVHAMAHSLG--------- 267
Query: 324 GYSDDHPIIPHGLSVVMSAPAV--FNFTAASSPERHIEAAELLGADVSRVKKADA 376
G D +PHG + P V FN+ AA PER+ AE LG DV + +A
Sbjct: 268 GLLD----LPHGECNAILLPHVMEFNYPAA--PERYARIAEALGLDVRGLTTEEA 316
Score = 131 bits (331), Expect = 3e-33
Identities = 82/286 (28%), Positives = 129/286 (45%), Gaps = 47/286 (16%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
+PTT+G+G++ + +I K K I +++L P + LIDP ++P +TA +G D
Sbjct: 132 CIPTTAGSGADVSQFAIITDTERKVKMAIISKSLVPDIALIDPETLTTMPPELTAATGLD 191
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
HA+E++ + +P++D+ A A++ I A+ N
Sbjct: 192 ALTHAIEAYVSN-------------------ASSPLTDLHALEAIRLIAANLPPAIANPT 232
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
DLEAR M LAS AG+ F NA + H +++ + G D +PHG
Sbjct: 233 DLEARESMMLASLQAGLAFSNAILGAVHAMAHSLG---------GLLD----LPHGECNA 279
Query: 556 MSAPAV--FNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGL 613
+ P V FN+ AA PER+ AE LG DV + +A + + VR + + L
Sbjct: 280 ILLPHVMEFNYPAA--PERYARIAEALGLDVRGLTTEEAALAVIEAVRRLRAALGVPETL 337
Query: 614 KVLGYTSADIPALVTGTLPQHRITKLA-----PREQSEEDLANLFE 654
LG DIP L K A PR+ + ED+ ++E
Sbjct: 338 GDLGVKREDIPLLAR------NALKDACMVTNPRDATVEDIEAIYE 377
>gnl|CDD|173948 cd08189, Fe-ADH5, Iron-containing alcohol dehydrogenases-like.
Iron-containing alcohol dehydrogenase-like. Alcohol
dehydrogenase catalyzes the reduction of acetaldehyde to
alcohol with NADP as cofactor. Its activity requires
iron ions. The protein structure represents a
dehydroquinate synthase-like fold and belongs to the
alcohol dehydrogenase-like superfamily. They are
distinct from other alcohol dehydrogenases which
contains different protein domain. Proteins of this
family have not been characterized. Their specific
function is unknown.
Length = 374
Score = 175 bits (445), Expect = 6e-49
Identities = 106/350 (30%), Positives = 160/350 (45%), Gaps = 40/350 (11%)
Query: 30 TIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRV 89
+ +G G ++ + + ++V ++TD L KL + L++L G+++ ++D V
Sbjct: 6 KLFVGSGSLAQLPAAISQLGVKKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPP 65
Query: 90 EPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGK 149
+PT ++ R CDA +AVGGGSVID KA +P+ G K
Sbjct: 66 DPTIENVEAGLALYRENGCDAILAVGGGSVIDCAKAIAARAANPKKSLRKLT----GLLK 121
Query: 150 PVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLP 209
V PL PL AIPTT+GTGSE T ++ K I++ L P +DP TL LP
Sbjct: 122 -VKKPLPPLFAIPTTAGTGSEVTIAAVISDPETHEKYAISDPRLLPKAAALDPRLTLGLP 180
Query: 210 ERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQ 269
+TA +G D HA+E++ P SD +A A++ I +
Sbjct: 181 PHITAATGMDALTHAVEAYIGR-------------------NATPESDAYALAAIKLIFE 221
Query: 270 YFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDH 329
+A + +LEAR M LAS AG+ F AGV H +++ + G +
Sbjct: 222 NLPKAYEDGSNLEAREAMALASYYAGLAFTRAGVGYVHAIAHQLGG---VYG-------- 270
Query: 330 PIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLG---ADVSRVKKADA 376
IPHGL+ + P V F ++ +R E A+ LG A S A A
Sbjct: 271 --IPHGLANAIVLPHVLEFYGDAAEDRLAELADALGLGDAGESDSDLAAA 318
Score = 112 bits (282), Expect = 9e-27
Identities = 78/284 (27%), Positives = 120/284 (42%), Gaps = 46/284 (16%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
A+PTT+GTGSE T ++ K I++ L P +DP TL LP +TA +G D
Sbjct: 131 AIPTTAGTGSEVTIAAVISDPETHEKYAISDPRLLPKAAALDPRLTLGLPPHITAATGMD 190
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
HA+E++ P SD +A A++ I + +A +
Sbjct: 191 ALTHAVEAYIGR-------------------NATPESDAYALAAIKLIFENLPKAYEDGS 231
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
+LEAR M LAS AG+ F AGV H +++ + G + IPHGL+
Sbjct: 232 NLEAREAMALASYYAGLAFTRAGVGYVHAIAHQLGG---VYG----------IPHGLANA 278
Query: 556 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKV 615
+ P V F ++ +R E A+ LG + +D D VR + I L+
Sbjct: 279 IVLPHVLEFYGDAAEDRLAELADALGLGDAGESDSDLAAAFIDAVRELNRTLGIPTTLEA 338
Query: 616 LGYTSADIPALVTGTLPQHRITKLA------PREQSEEDLANLF 653
+ ++DIPA+ R K A P+ E+ +
Sbjct: 339 I--KASDIPAIA------KRALKEANPLYPVPKLMDREECEQIL 374
>gnl|CDD|237515 PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol
dehydrogenase; Provisional.
Length = 862
Score = 174 bits (444), Expect = 7e-46
Identities = 111/363 (30%), Positives = 164/363 (45%), Gaps = 94/363 (25%)
Query: 44 DMVNMKAQRVCVMTDPHLSKLAPVKATLDSL--TRHGVKFELFDKVRVEPTGDSFLEATK 101
++ K R ++TD + +L V D L +GV++E+F +V +PT + + +
Sbjct: 476 ELDGKK--RAFIVTDRFMVELGYVDKVTDVLKKRENGVEYEVFSEVEPDPTLSTVRKGAE 533
Query: 102 FVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLD------------YVNAPIG-KG 148
+RS + D IA+GGGS +D K L+Y PE +F D Y +G K
Sbjct: 534 LMRSFKPDTIIALGGGSPMDAAKIMWLFYEHPETDFEDLAQKFMDIRKRIYKFPKLGKKA 593
Query: 149 KPVTVPLKPLIAIPTTSGTGSETTGVS-IFDYEPLKAKTG----IANRALKPTLGLIDPL 203
K L+AIPTTSGTGSE T + I D KTG +A+ L P + ++DP
Sbjct: 594 K--------LVAIPTTSGTGSEVTPFAVITD-----DKTGVKYPLADYELTPDVAIVDPN 640
Query: 204 HTLSLPERVTAYSGFDVFCHALESFT---ALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260
+++P+ +TA +G D HALE++ A Y TD L
Sbjct: 641 LVMTMPKSLTADTGIDALTHALEAYVSVMASDY-------TDGL---------------- 677
Query: 261 RFALQTIR---QYFKRAVYN-QDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGN 316
ALQ I+ +Y R+ N D EAR MH AS +AG+ F NA + +CH +++ +
Sbjct: 678 --ALQAIKLVFEYLPRSYKNGAKDPEAREKMHNASTIAGMAFANAFLGICHSMAHKLGA- 734
Query: 317 VKTFHPAGYSDDHPIIPHGLSVVMSAPAV--FN------FTAAS------SPERHIEAAE 362
FH IPHG + + P V +N A + ER+ E A
Sbjct: 735 --EFH----------IPHGRANAILLPHVIRYNATDPPKQAAFPQYEYPRADERYAEIAR 782
Query: 363 LLG 365
LG
Sbjct: 783 HLG 785
Score = 121 bits (307), Expect = 1e-28
Identities = 83/279 (29%), Positives = 120/279 (43%), Gaps = 73/279 (26%)
Query: 372 KKAD--AVPTTSGTGSETTGVS-IFDYEPLKAKTG----IANRALKPTLGLIDPLHTLSL 424
KKA A+PTTSGTGSE T + I D KTG +A+ L P + ++DP +++
Sbjct: 591 KKAKLVAIPTTSGTGSEVTPFAVITD-----DKTGVKYPLADYELTPDVAIVDPNLVMTM 645
Query: 425 PERVTAYSGFDVFCHALESFT---ALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQ 481
P+ +TA +G D HALE++ A Y TD L ALQ
Sbjct: 646 PKSLTADTGIDALTHALEAYVSVMASDY-------TDGL------------------ALQ 680
Query: 482 TIR---QYFKRAVYN-QDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFH 537
I+ +Y R+ N D EAR MH AS +AG+ F NA + +CH +++ + FH
Sbjct: 681 AIKLVFEYLPRSYKNGAKDPEAREKMHNASTIAGMAFANAFLGICHSMAHKLGA---EFH 737
Query: 538 PAGYSDDHPIIPHGLSVVMSAPAV--FN------FTAAS------SPERHIEAAELLGAD 583
IPHG + + P V +N A + ER+ E A LG
Sbjct: 738 ----------IPHGRANAILLPHVIRYNATDPPKQAAFPQYEYPRADERYAEIARHLGLP 787
Query: 584 VSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSAD 622
S + + L + ++ I +K G AD
Sbjct: 788 GSTT--EEKVESLIKAIEELKAELGIPMSIKEAGVDEAD 824
>gnl|CDD|173951 cd08192, Fe-ADH7, Iron-containing alcohol dehydrogenases-like,
involved in the linear alkylbenzenesulfonate (LAS)
degradation pathway. NAD-dependent iron-containing
alcohol dehydrogenase-like. Proteins in this family are
NAD-dependent alcohol dehydrogenases which are involved
in the linear alkylbenzenesulfonate (LAS) degradation
pathway. They catalyze the oxidation of beta-hydroxy CoA
ester to beta-oxo CoA ester, which then be subject to
CoA-dependent thiolysis to yield acetyl-CoA and
6-C8-SPC-CoA. The major laundry surfactant in worldwide
use is commercial linear alkylbenzenesulfonate (LAS)
which contains 20 congeners of linear alkanes (C10 to
C13). LAS is fully biodegradable in oxic environments.
Degradation involves microbial communities. Parvibaculum
lavamentivorans DS-1T is a representative member of many
heterotrophic, LAS-degrading communities, in which it
catalyzes the first steps of LAS degradation. Strain
DS-1T is a small heterotrophic bacterium able to
omega-oxygenate the commercial surfactant linear
alkylbenzenesulfonate (LAS) and shorten the side chain
by beta-oxidation to yield sulfophenylcarboxylates
(SPC). Parvibaculum lavamentivorans utilizes 3-C12-LAS
as the sole carbon and energy source, and excretes
largely 4-C6-SPC.
Length = 370
Score = 165 bits (419), Expect = 3e-45
Identities = 104/340 (30%), Positives = 150/340 (44%), Gaps = 39/340 (11%)
Query: 30 TIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRV 89
IR G G +E+ + + +R ++TDP L+ L V L L G+ LFD+V
Sbjct: 4 RIRFGAGAIKELPAECAELGIKRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPP 63
Query: 90 EPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGK 149
PT + R+ CD IA GGGS +D KA L DY I G
Sbjct: 64 NPTEAAVEAGLAAYRAGGCDGVIAFGGGSALDLAKAVAL-MAGHPGPLWDY--EDIEGGW 120
Query: 150 P-VTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSL 208
P +T + PLIAIPTT+GTGSE ++ E K I + L P + DP TL L
Sbjct: 121 PRITDAIPPLIAIPTTAGTGSEVGRAAVITDEDTGRKLIIFSPHLLPKAAICDPELTLGL 180
Query: 209 PERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIR 268
P +TA +G D H +E++ + P + NP++D A L+ I
Sbjct: 181 PAGLTAATGMDALTHCIEAYLS----------------PGF---NPMADGIALEGLRLIS 221
Query: 269 QYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDD 328
++ +RAV + DLEAR M +A++M + F G+ H LS+P+ H
Sbjct: 222 RHLERAVRDGGDLEARGGMMMAASMGAMAF-QKGLGAVHSLSHPLGALYNL-H------- 272
Query: 329 HPIIPHGL--SVVMSAPAVFNFTAASSPERHIEAAELLGA 366
HGL +V++ FN A + A +G
Sbjct: 273 -----HGLLNAVLLPYVLRFNRPAIEEKIARLARALAMGL 307
Score = 123 bits (310), Expect = 1e-30
Identities = 78/283 (27%), Positives = 118/283 (41%), Gaps = 48/283 (16%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
A+PTT+GTGSE ++ E K I + L P + DP TL LP +TA +G D
Sbjct: 132 AIPTTAGTGSEVGRAAVITDEDTGRKLIIFSPHLLPKAAICDPELTLGLPAGLTAATGMD 191
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
H +E++ + P + NP++D A L+ I ++ +RAV +
Sbjct: 192 ALTHCIEAYLS----------------PGF---NPMADGIALEGLRLISRHLERAVRDGG 232
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGL--S 553
DLEAR M +A++M + F G+ H LS+P+ H HGL +
Sbjct: 233 DLEARGGMMMAASMGAMAF-QKGLGAVHSLSHPLGALYNL-H------------HGLLNA 278
Query: 554 VVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGL 613
V++ P V F + E+ A L A AD + ++ I + L
Sbjct: 279 VLL--PYVLRFNRPAIEEKIARLARALAMG----LGGFAD--FADAILALNARLGIPHTL 330
Query: 614 KVLGYTSADIPALVTGTL--PQHRITKLAPREQSEEDLANLFE 654
+ LG D+ + L P H PR + ED L E
Sbjct: 331 RELGVDEDDLDRIAEKALADPSHATN---PRPATAEDYRALLE 370
>gnl|CDD|173940 cd08181, PPD-like, 1,3-propanediol dehydrogenase-like (PPD).
1,3-propanediol dehydrogenase-like (PPD). This family is
a member of the iron-containing alcohol dehydrogenase
superfamily, and exhibits a dehydroquinate synthase-like
fold. Protein sequence similarity search and other
biochemical evidences suggest that they are close to the
iron-containing 1,3-propanediol dehydrogenase (EC
1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the
oxidation of propane-1,3-diol to 3-hydroxypropanal with
the simultaneous reduction of NADP+ to NADPH. The
protein structure of Thermotoga maritima TM0920 gene
contains one NADP+ and one iron ion.
Length = 357
Score = 159 bits (405), Expect = 1e-43
Identities = 84/294 (28%), Positives = 135/294 (45%), Gaps = 40/294 (13%)
Query: 72 DSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYC 131
+L G+++E+FD+V P+ ++ +EA + + D I +GGGS +D KA +
Sbjct: 48 KALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIGGGSPLDAAKAIAVLIK 107
Query: 132 DPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANR 191
+P+ + Y + + P++AIPTT+GTGSE T S+ K G +
Sbjct: 108 NPDLKVELYFRS-------KYLKALPVVAIPTTAGTGSEVTQYSVLTDHEEGTKKGFGHD 160
Query: 192 ALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQG 251
+ P L +DP +TL+LP+ VT + D HA+E + L +
Sbjct: 161 LIFPKLAFLDPKYTLTLPKEVTINTALDALSHAVEGY---------------LSNKS--- 202
Query: 252 QNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSY 311
P SD+ A+ AL+ ++ + + N+ D EAR + LAS +AG+ G L HGL Y
Sbjct: 203 -TPYSDMLAKEALELFKECLPKLLENELDEEAREKLMLASTLAGMVIAQTGTTLPHGLGY 261
Query: 312 PISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLG 365
P++ IPHGL+ + P PE + +LLG
Sbjct: 262 PLT----YEKG---------IPHGLANGIFLPEYLELAKEQIPE-KVFILKLLG 301
Score = 125 bits (317), Expect = 2e-31
Identities = 62/206 (30%), Positives = 92/206 (44%), Gaps = 33/206 (16%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
A+PTT+GTGSE T S+ K G + + P L +DP +TL+LP+ VT + D
Sbjct: 129 AIPTTAGTGSEVTQYSVLTDHEEGTKKGFGHDLIFPKLAFLDPKYTLTLPKEVTINTALD 188
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
HA+E + L + P SD+ A+ AL+ ++ + + N+
Sbjct: 189 ALSHAVEGY---------------LSNKS----TPYSDMLAKEALELFKECLPKLLENEL 229
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
D EAR + LAS +AG+ G L HGL YP++ IPHGL+
Sbjct: 230 DEEAREKLMLASTLAGMVIAQTGTTLPHGLGYPLT----YEKG---------IPHGLANG 276
Query: 556 MSAPAVFNFTAASSPERHIEAAELLG 581
+ P PE + +LLG
Sbjct: 277 IFLPEYLELAKEQIPE-KVFILKLLG 301
>gnl|CDD|173945 cd08186, Fe-ADH8, Iron-containing alcohol dehydrogenase. Type III
Iron-containing alcohol dehydrogenases (ADH). Alcohol
dehydrogenase catalyzes the reduction of acetaldehyde to
alcohol with NADP as cofactor. The ADH of
hyperthermophilic archaeon Thermococcus hydrothermalis
oxidizes a series of primary aliphatic and aromatic
alcohols preferentially from C2 to C8 but is also active
towards methanol and glycerol and stereospecific for
monoterpenes. It was suggested that the type III ADHs in
microorganisms are involved in acetaldehyde detoxication
rather than in alcohol turnover.
Length = 383
Score = 158 bits (401), Expect = 9e-43
Identities = 96/321 (29%), Positives = 140/321 (43%), Gaps = 53/321 (16%)
Query: 44 DMVNMKAQRVCVMTDPHLSK----LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEA 99
D+ + +V ++T K V+ LD HG+++ L++KV PT D EA
Sbjct: 20 DLKSKGISKVLLVTGKSAYKKSGAWDKVEPALD---EHGIEYVLYNKVTPNPTVDQVDEA 76
Query: 100 TKFVRSVQCDAFIAVGGGSVIDTCKAAN--LYYCDPEAEFLDYVNAPIGKGKPVTVPLKP 157
K R A IA+GGGS ID+ K+A L + A L + K P
Sbjct: 77 AKLGREFGAQAVIAIGGGSPIDSAKSAAILLEHPGKTARDLY-------EFKFTPEKALP 129
Query: 158 LIAIPTTSGTGSETTG---VSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTA 214
LIAI T GTG+E SI + E K GIA + P + DP T +LP T
Sbjct: 130 LIAINLTHGTGTEVDRFAVASIDETE---EKPGIAYDCIYPDYSIDDPALTTTLPPDQTI 186
Query: 215 YSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRA 274
Y+ D H +E+ T NP S + A+ A++ I +Y +A
Sbjct: 187 YTSIDALNHVVEAATTTT-------------------ANPYSILLAKEAVRLIAEYLPKA 227
Query: 275 VYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPH 334
+ D+L+AR + ASA+AG+ N +HL H L +P+S P +PH
Sbjct: 228 LEEPDNLQARYWLLYASAIAGIAIDNGLLHLTHALEHPLSAL------------KPDLPH 275
Query: 335 GLSVVMSAPAVFNFTAASSPE 355
G + + PAV ++PE
Sbjct: 276 GAGLAILLPAVVKHIYPATPE 296
Score = 120 bits (302), Expect = 2e-29
Identities = 81/297 (27%), Positives = 125/297 (42%), Gaps = 44/297 (14%)
Query: 368 VSRVKKADAVPTTSGTGSETTG---VSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSL 424
+ A+ T GTG+E SI + E K GIA + P + DP T +L
Sbjct: 124 PEKALPLIAINLTHGTGTEVDRFAVASIDETE---EKPGIAYDCIYPDYSIDDPALTTTL 180
Query: 425 PERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIR 484
P T Y+ D H +E+ T NP S + A+ A++ I
Sbjct: 181 PPDQTIYTSIDALNHVVEAATTTT-------------------ANPYSILLAKEAVRLIA 221
Query: 485 QYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDD 544
+Y +A+ D+L+AR + ASA+AG+ N +HL H L +P+S
Sbjct: 222 EYLPKALEEPDNLQARYWLLYASAIAGIAIDNGLLHLTHALEHPLSAL------------ 269
Query: 545 HPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKA-DAGKLLADTVRGY 603
P +PHG + + PAV ++PE AELL V +K + + A V +
Sbjct: 270 KPDLPHGAGLAILLPAVVKHIYPATPEI---LAELLRPLVPGLKGVPEEAEKAAKAVEKW 326
Query: 604 MDQMKIENGLKVLGYTSADIPALVT---GTLPQHRITKLAPREQSEEDLANLFENSM 657
+ + I L G+T D+ L T + LAP E S E +A ++ +S+
Sbjct: 327 LFSIGITEKLSDYGFTEGDVEKLTELAVTTPSLKLLLSLAPVEASREVIARIYTDSL 383
>gnl|CDD|173938 cd08179, NADPH_BDH, NADPH-dependent butanol dehydrogenase involved
in the butanol and ethanol formation pathway in
bacteria. NADPH-dependent butanol dehydrogenase (BDH)
is involved in the butanol and ethanol formation pathway
of some bacteria. The fermentation process is
characterized by an acid producing growth phase,
followed by a solvent producing phase. The latter phase
is associated with the induction of solventogenic
enzymes such as butanol dehydrogenase. The activity of
the enzymes require NADPH as cofactor, as well as
divalent ions zinc or iron. This family is a member of
the iron-containing alcohol dehydrogenase superfamily.
Protein structure has a dehydroquinate synthase-like
fold.
Length = 375
Score = 156 bits (397), Expect = 3e-42
Identities = 96/337 (28%), Positives = 160/337 (47%), Gaps = 51/337 (15%)
Query: 47 NMKAQRVCVMTDPH-LSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS 105
+K ++ ++T + K + L G++ E+F+ V +P+ ++ L+ + +R
Sbjct: 20 TLKGKKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMRE 79
Query: 106 VQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVP-LKP---LIAI 161
+ D IA+GGGS ID KA ++Y PE F D V KP T+P L+ AI
Sbjct: 80 FEPDWIIALGGGSPIDAAKAMWIFYEYPELTFEDIV-------KPFTLPELRNKARFCAI 132
Query: 162 PTTSGTGSETTGVS-IFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDV 220
P+TSGT +E T S I DYE K +A+ + P + ++DP T ++P ++TA +G D
Sbjct: 133 PSTSGTATEVTAFSVITDYEK-GIKYPLADFEITPDVAIVDPELTETMPPKLTAETGMDA 191
Query: 221 FCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDD 280
HA+E++ + N +D A A++ I + ++ Y DD
Sbjct: 192 LTHAIEAYVS------------TAA-------NDFTDPLALHAIEMIFENLPKS-YEGDD 231
Query: 281 LEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVM 340
EAR MH A MAG+ F NA + + H +++ F +PHGL+ +
Sbjct: 232 KEAREKMHNAQCMAGMAFSNALLGIVHSMAHKTGA---EFG----------VPHGLANAI 278
Query: 341 SAPAV--FNFTAASSPERHIEAAELLGAD--VSRVKK 373
P V FN A + +R+ A+ G + + V++
Sbjct: 279 YLPYVIQFNSKDAEAKKRYAGLAKEEGVEDLIEAVRE 315
Score = 125 bits (317), Expect = 2e-31
Identities = 75/292 (25%), Positives = 125/292 (42%), Gaps = 55/292 (18%)
Query: 372 KKAD--AVPTTSGTGSETTGVS-IFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERV 428
KA A+P+TSGT +E T S I DYE K +A+ + P + ++DP T ++P ++
Sbjct: 125 NKARFCAIPSTSGTATEVTAFSVITDYEK-GIKYPLADFEITPDVAIVDPELTETMPPKL 183
Query: 429 TAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFK 488
TA +G D HA+E++ + N +D A A++ I +
Sbjct: 184 TAETGMDALTHAIEAYVS------------TAA-------NDFTDPLALHAIEMIFENLP 224
Query: 489 RAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPII 548
++ Y DD EAR MH A MAG+ F NA + + H +++ F +
Sbjct: 225 KS-YEGDDKEAREKMHNAQCMAGMAFSNALLGIVHSMAHKTGA---EFG----------V 270
Query: 549 PHGLSVVMSAPAV--FNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQ 606
PHGL+ + P V FN A + +R+ A+ G + L + VR +
Sbjct: 271 PHGLANAIYLPYVIQFNSKDAEAKKRYAGLAKEEGVE-----------DLIEAVRELNKK 319
Query: 607 MKIENGLKVLGYTS----ADIPALVTGTLPQHRITKLAPREQSEEDLANLFE 654
+ I K G + L + + T PR+ ++E++ L +
Sbjct: 320 LGIPACFKEYGIDEQEFLEKLDELAENAI-KDACTGTNPRQPTKEEMKKLLK 370
>gnl|CDD|173942 cd08183, Fe-ADH2, Iron-containing alcohol dehydrogenases-like.
Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol
dehydrogenase catalyzes the reduction of acetaldehyde to
alcohol with NADP as cofactor. Its activity requires
iron ions. The protein structure represents a
dehydroquinate synthase-like fold and is a member of the
iron-activated alcohol dehydrogenase-like family. They
are distinct from other alcohol dehydrogenases which
contains different protein domain. Proteins of this
family have not been characterized. Their specific
function is unknown. They are mainly found in bacteria.
Length = 374
Score = 150 bits (382), Expect = 3e-40
Identities = 97/338 (28%), Positives = 143/338 (42%), Gaps = 45/338 (13%)
Query: 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR 88
I G GV +E+ + +RV ++T + A + +++L G++ V
Sbjct: 2 PRIHFGRGVAKELP-ALAAELGRRVLLVTGASSLRAAWL---IEALRAAGIEVTHV-VVA 56
Query: 89 VEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEA--EFLDYVNAPIG 146
EP+ + A R+ CD IA+GGGSVID KA +P + ++L+ V G
Sbjct: 57 GEPSVELVDAAVAEARNAGCDVVIAIGGGSVIDAGKAIAALLPNPGSVLDYLEGV----G 112
Query: 147 KGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTL 206
+G P+ P P IAIPTT+GTGSE T ++ K + + + P + ++DP TL
Sbjct: 113 RGLPLDGPPLPFIAIPTTAGTGSEVTKNAVISVPGAGFKVSLRHPRMLPDVAIVDPELTL 172
Query: 207 SLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQT 266
S P VTA SG D LE + P NP++D R L
Sbjct: 173 SCPRSVTAASGLDALTQLLEPYL---------SPR----------ANPLTDALCRSGLPR 213
Query: 267 IRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYS 326
+ +RA N +D AR M LAS + G+ NAG+ HGL+ PI G
Sbjct: 214 GARALRRACENGEDAAARDDMALASLLGGIALANAGLGAVHGLAGPIGGLFD-------- 265
Query: 327 DDHPIIPHGL--SVVMSAPAVFNFTAASSPERHIEAAE 362
PHG + ++ N A A
Sbjct: 266 -----APHGAICATLLPPVLAANIRALRQRGPGNPALA 298
Score = 105 bits (264), Expect = 2e-24
Identities = 68/260 (26%), Positives = 105/260 (40%), Gaps = 39/260 (15%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
A+PTT+GTGSE T ++ K + + + P + ++DP TLS P VTA SG D
Sbjct: 126 AIPTTAGTGSEVTKNAVISVPGAGFKVSLRHPRMLPDVAIVDPELTLSCPRSVTAASGLD 185
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
LE + P NP++D R L + +RA N +
Sbjct: 186 ALTQLLEPYL---------SPR----------ANPLTDALCRSGLPRGARALRRACENGE 226
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGL--S 553
D AR M LAS + G+ NAG+ HGL+ PI G PHG +
Sbjct: 227 DAAARDDMALASLLGGIALANAGLGAVHGLAGPIGGLFD-------------APHGAICA 273
Query: 554 VVMSAPAVFNFTAASSPERHI---EAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIE 610
++ N A A + ++ +A A L+ + + ++D++ +
Sbjct: 274 TLLPPVLAANIRALRQRGPGNPALAAYREVAGLLTGNLEAAADDLV-EWLEHWVDELGLP 332
Query: 611 NGLKVLGYTSADIPALVTGT 630
L G T D+ A+V
Sbjct: 333 -RLSDYGLTPDDLDAVVEAA 351
>gnl|CDD|131686 TIGR02638, lactal_redase, lactaldehyde reductase. This clade of
genes encoding iron-containing alcohol dehydrogenase
(pfam00465) proteins is generally found in apparent
operons for the catabolism of rhamnose or fucose.
Catabolism of both of these monosaccharides results in
lactaldehyde which is reduced by this enzyme to 1,2
propanediol. This protein is alternatively known by the
name 1,2 propanediol oxidoreductase. This enzyme is
active under anaerobic conditions in E. coli while being
inactivated by reactive oxygen species under aerobic
conditions. Under aerobic conditions the lactaldehyde
product of rhamnose and fucose catabolism is believed to
be oxidized to lactate by a separate enzyme,
lactaldehyde dehydrogenase [Energy metabolism, Sugars].
Length = 379
Score = 149 bits (379), Expect = 8e-40
Identities = 101/338 (29%), Positives = 154/338 (45%), Gaps = 40/338 (11%)
Query: 44 DMVNMKAQR----VCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEA 99
D+V+ +R V+TD L K D L G+ +ELFD+V+ PT
Sbjct: 19 DIVDEVKRRGFKKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAG 78
Query: 100 TKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLI 159
++ D IA+GGGS IDT KA + +P EF D + G P P P+I
Sbjct: 79 VAAFKASGADYLIAIGGGSPIDTAKAIGIISNNP--EFADVRSLE-GVA-PTKKPGVPII 134
Query: 160 AIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 219
AIPTT+GT +E T + E K K + P + +ID S+P+ +TA +G D
Sbjct: 135 AIPTTAGTAAEVTINYVITDEENKRKFVCVDPHDIPDVAVIDAEMMYSMPKSLTAATGMD 194
Query: 220 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 279
HA+E + T G ++D+ A++ I ++ + AV
Sbjct: 195 ALTHAIEGYI-------TK------------GAWELTDMLHLKAIEIIARWLRSAVEGGK 235
Query: 280 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 339
DLEAR M L +AG+GF N G+ L HG+++P+ A Y+ PHG++
Sbjct: 236 DLEAREQMALGQYVAGMGFSNVGLGLVHGMAHPLG--------AFYN-----TPHGVANA 282
Query: 340 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAV 377
+ P V F A + E++ E A+ +G + +A
Sbjct: 283 ILLPHVMEFNAEFTGEKYREIAKAMGVKTEGMSDEEAR 320
Score = 113 bits (285), Expect = 4e-27
Identities = 82/290 (28%), Positives = 130/290 (44%), Gaps = 37/290 (12%)
Query: 368 VSRVKKAD----AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLS 423
V+ KK A+PTT+GT +E T + E K K + P + +ID S
Sbjct: 123 VAPTKKPGVPIIAIPTTAGTAAEVTINYVITDEENKRKFVCVDPHDIPDVAVIDAEMMYS 182
Query: 424 LPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 483
+P+ +TA +G D HA+E + T G ++D+ A++ I
Sbjct: 183 MPKSLTAATGMDALTHAIEGYI-------TK------------GAWELTDMLHLKAIEII 223
Query: 484 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSD 543
++ + AV DLEAR M L +AG+GF N G+ L HG+++P+ A Y+
Sbjct: 224 ARWLRSAVEGGKDLEAREQMALGQYVAGMGFSNVGLGLVHGMAHPLG--------AFYN- 274
Query: 544 DHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGY 603
PHG++ + P V F A + E++ E A+ +G + +A + V+
Sbjct: 275 ----TPHGVANAILLPHVMEFNAEFTGEKYREIAKAMGVKTEGMSDEEARDAAVEAVKTL 330
Query: 604 MDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLF 653
++ I GL LG DIPAL L T PRE + E++ L+
Sbjct: 331 SKRVGIPEGLSELGVKEEDIPALAEAAL-ADVCTGGNPRETTVEEIEELY 379
>gnl|CDD|185351 PRK15454, PRK15454, ethanol dehydrogenase EutG; Provisional.
Length = 395
Score = 134 bits (339), Expect = 2e-34
Identities = 102/323 (31%), Positives = 139/323 (43%), Gaps = 38/323 (11%)
Query: 34 GPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTG 93
GPG G + + VM D L + SL G+ L+ EP
Sbjct: 33 GPGAVSSCGQQAQTRGLKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCI 92
Query: 94 DSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTV 153
A +R CD IA GGGSV+D KA L +P++ + V
Sbjct: 93 TDVCAAVAQLRESGCDGVIAFGGGSVLDAAKAVALLVTNPDSTLAEMSE------TSVLQ 146
Query: 154 PLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVT 213
P PLIAIPTT+GTGSETT V++ K +A+ +L P + ++D T +P VT
Sbjct: 147 PRLPLIAIPTTAGTGSETTNVTVIIDAVSGRKQVLAHASLMPDVAILDAALTEGVPSHVT 206
Query: 214 AYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKR 273
A +G D HA+E+++AL T P +D A A+ I + +
Sbjct: 207 AMTGIDALTHAIEAYSALNAT-------------------PFTDSLAIGAIAMIGKSLPK 247
Query: 274 AVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIP 333
AV DL AR M LAS MAG+ F +AG+ LCH +++ H IP
Sbjct: 248 AVGYGHDLAARESMLLASCMAGMAFSSAGLGLCHAMAHQPGA---ALH----------IP 294
Query: 334 HGLSVVMSAPAVFNFTAASSPER 356
HGL+ M P V F ER
Sbjct: 295 HGLANAMLLPTVMEFNRMVCRER 317
Score = 102 bits (254), Expect = 3e-23
Identities = 85/278 (30%), Positives = 123/278 (44%), Gaps = 39/278 (14%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
A+PTT+GTGSETT V++ K +A+ +L P + ++D T +P VTA +G D
Sbjct: 153 AIPTTAGTGSETTNVTVIIDAVSGRKQVLAHASLMPDVAILDAALTEGVPSHVTAMTGID 212
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
HA+E+++AL T P +D A A+ I + +AV
Sbjct: 213 ALTHAIEAYSALNAT-------------------PFTDSLAIGAIAMIGKSLPKAVGYGH 253
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
DL AR M LAS MAG+ F +AG+ LCH +++ H IPHGL+
Sbjct: 254 DLAARESMLLASCMAGMAFSSAGLGLCHAMAHQPGA---ALH----------IPHGLANA 300
Query: 556 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKV 615
M P V F ER + L R KK+D + V + ++ I L
Sbjct: 301 MLLPTVMEFNRMVCRERFSQIGRAL-----RTKKSDDRDAIN-AVSELIAEVGIGKRLGD 354
Query: 616 LGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLF 653
+G TSA A L + + PR S E + L+
Sbjct: 355 VGATSAHYGAWAQAAL-EDICLRSNPRTASLEQIVGLY 391
>gnl|CDD|132446 TIGR03405, Phn_Fe-ADH, phosphonate metabolism-associated
iron-containing alcohol dehydrogenase. This small clade
of iron-containing alcohol dehydrogenases of the
pfam00465 family is found in genomic contexts indicating
a role in the metabolism of phosphonates. In Delftia
acidovorans SPH-1, the gene ZP_01580650.1 is adjacent to
and running in the same direction as ZP_01580649.1
encoding the enzyme phosphonatase (PhnX, TIGR01422).
Upstream are also found genes encoding components of a
phosphonate ABC transport complex. In Ralstonia eutropha
H16 and Verminephrobacter eiseniae EF01-2 the
dehydrogenase is followed by a homolog of the PhnB gene,
a putative phosphonate-specific MFS-type transporter. In
Azoarcus BH72 the gene is preceded by
Phosphoenolpyruvate phosphomutase (aepX) and a putative
phosphonopyruvate decarboxylase (aepY), two genes
involved in the biosynthesis of phosphonoacetaldehyde
(Pald). Ususally these two are accompanied by a specific
transaminase, AepZ, which converts Pald to
2-aminoethylphosphonate (2-AEP).
2-hydroxyethylphosphonate (2-HEP), the presumed product
of the reaction of Pald with an alcohol dehydrogenase,
is a biologically novel but reasonable analog of 2-AEP
and may be a constituent of as-yet undescribed natural
products. In the case of Azoarcus, downstream of the
dehydrogenase is a CDP-glycerol:glycerophosphate
transferase homolog that may indicate the existence of a
pathway for 2-HEP-derived phosphonolipid biosynthesis.
Length = 355
Score = 129 bits (325), Expect = 1e-32
Identities = 81/281 (28%), Positives = 110/281 (39%), Gaps = 38/281 (13%)
Query: 108 CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPL-KPLIAIPTTSG 166
CD IA+GGGSVIDT K + E D + + G+ PL+AIPTT+G
Sbjct: 81 CDLVIALGGGSVIDTAKVLAVGLRRGE---FDLLLQLLRNGRDFAPTARLPLVAIPTTAG 137
Query: 167 TGSETTG-VSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL 225
TGSE T +++D E K + P ++D LSLP T +G D HAL
Sbjct: 138 TGSEVTPWATVWDAEN-SKKYSLHLPFTYPEAAIVDAALMLSLPREHTLSTGLDALSHAL 196
Query: 226 ESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARS 285
ES + NPVS A A I + + DL RS
Sbjct: 197 ESIWNV-------------------NANPVSRGLAIQAAADISRALPEVLAQPGDLALRS 237
Query: 286 HMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAV 345
M LA+ AG+ F N L H +SY + T +PHG++ + P V
Sbjct: 238 DMALAALKAGLAFSNTKTALAHSISYEM-----TLRHG--------VPHGIACSFTLPTV 284
Query: 346 FNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSE 386
+P R + G S + A T G +
Sbjct: 285 LRTALGRNPSRDALLQAVFGDTASAPARLRAFLDTLGVKTR 325
Score = 94.5 bits (235), Expect = 6e-21
Identities = 69/298 (23%), Positives = 107/298 (35%), Gaps = 51/298 (17%)
Query: 335 GLSVVMSAPAVFNFTAASSPERHIEAAELLGAD----VSRVKKADAVPTTSGTGSETTG- 389
G SV+ +A + + +LL + A+PTT+GTGSE T
Sbjct: 89 GGSVIDTAKVLAVGLRRGEFDL---LLQLLRNGRDFAPTARLPLVAIPTTAGTGSEVTPW 145
Query: 390 VSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPY 449
+++D E K + P ++D LSLP T +G D HALES +
Sbjct: 146 ATVWDAEN-SKKYSLHLPFTYPEAAIVDAALMLSLPREHTLSTGLDALSHALESIWNV-- 202
Query: 450 TERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAM 509
NPVS A A I + + DL RS M LA+
Sbjct: 203 -----------------NANPVSRGLAIQAAADISRALPEVLAQPGDLALRSDMALAALK 245
Query: 510 AGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASS 569
AG+ F N L H +SY + T +PHG++ + P V +
Sbjct: 246 AGLAFSNTKTALAHSISYEM-----TLRHG--------VPHGIACSFTLPTVLRTALGRN 292
Query: 570 PERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALV 627
P R + G S + +R ++D + ++ G + + +V
Sbjct: 293 PSRDALLQAVFGDTASAPAR----------LRAFLDTLGVKTRFADYGVSRDEARRMV 340
>gnl|CDD|173946 cd08187, BDH, Butanol dehydrogenase catalyzes the conversion of
butyraldehyde to butanol with the cofactor NAD(P)H being
oxidized in the process. The butanol dehydrogenase
(BDH) is involved in the final step of the butanol
formation pathway in anaerobic micro-organism. Butanol
dehydrogenase catalyzes the conversion of butyraldehyde
to butanol with the cofactor NAD(P)H being oxidized in
the process. Activity in the reverse direction was
50-fold lower than that in the forward direction. The
NADH-BDH had higher activity with longer chained
aldehydes and was inhibited by metabolites containing an
adenine moiety. This protein family belongs to the
so-called iron-containing alcohol dehydrogenase
superfamily. Since members of this superfamily use
different divalent ions, preferentially iron or zinc, it
has been suggested to be renamed to family III
metal-dependent polyol dehydrogenases.
Length = 382
Score = 126 bits (320), Expect = 1e-31
Identities = 75/293 (25%), Positives = 121/293 (41%), Gaps = 50/293 (17%)
Query: 72 DSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCK--AANLY 129
SL G++ V P ++ E + + + D +AVGGGSVID+ K AA
Sbjct: 51 ASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGGGSVIDSAKAIAAGAP 110
Query: 130 YCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIA 189
Y + + D+ + L P+ + T + TGSE G ++ E K K G
Sbjct: 111 Y---DGDVWDFF----TGKAKIEKAL-PVGTVLTLAATGSEMNGGAVITNEETKEKLGFG 162
Query: 190 NRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALES-FTALPYTERTPCPTDPLLRPA 248
+ L+P ++DP T +LP+ TA D+F H +E FT
Sbjct: 163 SPLLRPKFSILDPELTYTLPKYQTANGIVDIFSHVMEQYFT------------------- 203
Query: 249 YQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMA--G-VGFGNAGVHL 305
Y + D A L+T+ + +A+ N +D EAR+++ A+ +A G +G G
Sbjct: 204 YPVDADLQDRLAEGLLKTVIENGPKALKNPEDYEARANIMWAATLALNGLIGVGRPQDWA 263
Query: 306 CHGLSYPISGNVKTFHPAGYSDDHPIIPHG--LSVVMSAPAVFNFTAASSPER 356
H + + +S D I HG L++V PA + P +
Sbjct: 264 THMIEHELS---------ALYD----IAHGAGLAIVT--PAWMRYVYKEKPAK 301
Score = 81.7 bits (203), Expect = 1e-16
Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 40/203 (19%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
V T + TGSE G ++ E K K G + L+P ++DP T +LP+ TA D
Sbjct: 133 TVLTLAATGSEMNGGAVITNEETKEKLGFGSPLLRPKFSILDPELTYTLPKYQTANGIVD 192
Query: 436 VFCHALES-FTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQ 494
+F H +E FT Y + D A L+T+ + +A+ N
Sbjct: 193 IFSHVMEQYFT-------------------YPVDADLQDRLAEGLLKTVIENGPKALKNP 233
Query: 495 DDLEARSHMHLASAMA--G-VGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 551
+D EAR+++ A+ +A G +G G H + + +S D I HG
Sbjct: 234 EDYEARANIMWAATLALNGLIGVGRPQDWATHMIEHELS---------ALYD----IAHG 280
Query: 552 --LSVVMSAPAVFNFTAASSPER 572
L++V PA + P +
Sbjct: 281 AGLAIVT--PAWMRYVYKEKPAK 301
>gnl|CDD|182595 PRK10624, PRK10624, L-1,2-propanediol oxidoreductase; Provisional.
Length = 382
Score = 117 bits (296), Expect = 1e-28
Identities = 94/347 (27%), Positives = 148/347 (42%), Gaps = 62/347 (17%)
Query: 34 GPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTG 93
G G + ++ ++ ++TD L K V D L G+ +E++D V+ PT
Sbjct: 14 GRGAIGALTDEVKRRGFKKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTI 73
Query: 94 DSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVN----APIGKGK 149
+ E + ++ D IA+GGGS DTCKA + +PE F D + AP K
Sbjct: 74 EVVKEGVEVFKASGADYLIAIGGGSPQDTCKAIGIISNNPE--FADVRSLEGVAPTKK-- 129
Query: 150 PVTVPLKPLIAIPTTSGTGSETT-GVSIFDYEPLKAKTGIANRALK-------PTLGLID 201
P P+IAIPTT+GT +E T I D E R P + +D
Sbjct: 130 ----PSVPIIAIPTTAGTAAEVTINYVITDEE--------KRRKFVCVDPHDIPQVAFVD 177
Query: 202 PLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWAR 261
S+P + A +G D HA+E + +G ++D+
Sbjct: 178 ADMMDSMPPGLKAATGVDALTHAIEGYIT-------------------RGAWALTDMLHL 218
Query: 262 FALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFH 321
A++ I + AV D EA M L +AG+GF N G+ L HG+++P+
Sbjct: 219 KAIEIIAGALRGAVAG--DKEAGEGMALGQYIAGMGFSNVGLGLVHGMAHPLG------- 269
Query: 322 PAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADV 368
A Y+ PHG++ + P V + A + E++ + A +G V
Sbjct: 270 -AFYN-----TPHGVANAILLPHVMEYNADFTGEKYRDIARAMGVKV 310
Score = 92.0 bits (229), Expect = 6e-20
Identities = 72/290 (24%), Positives = 118/290 (40%), Gaps = 51/290 (17%)
Query: 376 AVPTTSGTGSETT-GVSIFDYEPLKAKTGIANRALK-------PTLGLIDPLHTLSLPER 427
A+PTT+GT +E T I D E R P + +D S+P
Sbjct: 136 AIPTTAGTAAEVTINYVITDEE--------KRRKFVCVDPHDIPQVAFVDADMMDSMPPG 187
Query: 428 VTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYF 487
+ A +G D HA+E + +G ++D+ A++ I
Sbjct: 188 LKAATGVDALTHAIEGYIT-------------------RGAWALTDMLHLKAIEIIAGAL 228
Query: 488 KRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPI 547
+ AV D EA M L +AG+GF N G+ L HG+++P+ A Y+
Sbjct: 229 RGAVAG--DKEAGEGMALGQYIAGMGFSNVGLGLVHGMAHPLG--------AFYN----- 273
Query: 548 IPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQM 607
PHG++ + P V + A + E++ + A +G V + +A + V+ +
Sbjct: 274 TPHGVANAILLPHVMEYNADFTGEKYRDIARAMGVKVEGMSLEEARNAAVEAVKALNRDV 333
Query: 608 KIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSM 657
I L+ +G DIPAL T PRE + ED+ L++ +
Sbjct: 334 GIPPHLRDVGVKEEDIPALAQAAF-DDVCTGGNPREATLEDIVELYKKAW 382
>gnl|CDD|173927 cd07766, DHQ_Fe-ADH, Dehydroquinate synthase-like (DHQ-like) and
iron-containing alcohol dehydrogenases (Fe-ADH).
Dehydroquinate synthase-like. This superfamily divides
into two subgroups: the dehydroquinate synthase-like,
and a large metal-containing alcohol dehydrogenases
(ADH), known as iron-containing alcohol dehydrogenases.
Dehydroquinate synthase (DHQS) catalyzes the conversion
of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to
dehydroquinate (DHQ) in the second step of the shikimate
pathway. This pathway involves seven sequential
enzymatic steps in the conversion of erythrose
4-phosphate and phosphoenolpyruvate into chorismate for
subsequent synthesis of aromatic compounds.
Dehydroquinate synthase-like group includes
dehydroquinate synthase, 2-deoxy-scyllo-inosose
synthase, and 2-epi-5-epi-valiolone synthase. The
alcohol dehydrogenases in this superfamily contain a
dehydroquinate synthase-like protein structural fold and
mostly contain iron. They are distinct from other
alcohol dehydrogenases which contains different protein
domains. There are several distinct families of alcohol
dehydrogenases: Zinc-containing long-chain alcohol
dehydrogenases; insect-type, or short-chain alcohol
dehydrogenases; iron-containing alcohol dehydrogenases,
and others. The iron-containing family has a Rossmann
fold-like topology that resembles the fold of the
zinc-dependent alcohol dehydrogenases, but lacks
sequence homology, and differs in strand arrangement.
ADH catalyzes the reversible oxidation of alcohol to
acetaldehyde with the simultaneous reduction of NAD(P)+
to NAD(P)H.
Length = 332
Score = 111 bits (280), Expect = 8e-27
Identities = 84/338 (24%), Positives = 132/338 (39%), Gaps = 62/338 (18%)
Query: 30 TIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRV 89
I G G ++G ++ R V++D + K + DSL + + +FD V
Sbjct: 3 RIVFGEGAIEKIGEEIKRGGFDRALVVSDEGVVKGV-GEKVADSLKKL-IAVHIFDGVGP 60
Query: 90 EPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGK 149
PT + EA + R+ + DA IAVGGGS +DT KA
Sbjct: 61 NPTFEEVKEAVERARAAEVDAVIAVGGGSTLDTAKAVAA--------------------- 99
Query: 150 PVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLP 209
+ P+I +PTT+ TGSE + ++ + KTG P + +D T LP
Sbjct: 100 -LLNRGLPIIIVPTTAATGSEVSPKAVI-TDKEGGKTG-FFYPDNPDVVFVDTDITKGLP 156
Query: 210 ERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQ 269
R A G D HALE+++ + P++D A AL+TI +
Sbjct: 157 PRQVASGGVDALSHALEAYST-------------------KKSWPIADALAEKALETIEE 197
Query: 270 YFKRAVYNQDDLEARSHMHLASAMAGVGFGNA---GVHLCHGLSYPISGNVKTFHPAGYS 326
+A D +A + A+ +AG G A G+ H + + ++
Sbjct: 198 DLPKA-IEPGDYDALEKVVWAATLAGNGLFAAKSGGLGAAHAIGHALT----ALEG---- 248
Query: 327 DDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELL 364
IPHG +V + PAV +PE +
Sbjct: 249 -----IPHGEAVAVGLPAVLKVANDMNPEIEHAIEAVF 281
Score = 81.7 bits (202), Expect = 1e-16
Identities = 59/255 (23%), Positives = 93/255 (36%), Gaps = 59/255 (23%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
VPTT+ TGSE + ++ + KTG P + +D T LP R A G D
Sbjct: 109 IVPTTAATGSEVSPKAVI-TDKEGGKTG-FFYPDNPDVVFVDTDITKGLPPRQVASGGVD 166
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
HALE+++ + P++D A AL+TI + +A
Sbjct: 167 ALSHALEAYST-------------------KKSWPIADALAEKALETIEEDLPKA-IEPG 206
Query: 496 DLEARSHMHLASAMAGVGFGNA---GVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGL 552
D +A + A+ +AG G A G+ H + + ++ IPHG
Sbjct: 207 DYDALEKVVWAATLAGNGLFAAKSGGLGAAHAIGHALT----ALEG---------IPHGE 253
Query: 553 SVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENG 612
+V + PAV +PE + V K +++ +
Sbjct: 254 AVAVGLPAVLKVANDMNPEIE--------HAIEAVFK-------------FLEDLGAPTD 292
Query: 613 LKVLGYTSADIPALV 627
L LG + DI L
Sbjct: 293 LADLGVSKEDIDKLA 307
>gnl|CDD|182118 PRK09860, PRK09860, putative alcohol dehydrogenase; Provisional.
Length = 383
Score = 112 bits (281), Expect = 9e-27
Identities = 88/356 (24%), Positives = 149/356 (41%), Gaps = 44/356 (12%)
Query: 26 MASSTI------RIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGV 79
MA+ST IG + M + R ++TD L+KL +L +
Sbjct: 1 MAASTFFIPSVNVIGADSLTDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNI 60
Query: 80 KFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLD 139
++D + PT ++ K ++ CD+ I++GGGS D K L + + D
Sbjct: 61 FSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGSPHDCAKGIALVAAN-GGDIRD 119
Query: 140 YVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGL 199
Y P P+IAI TT+GT SE T I E K I ++ + P L +
Sbjct: 120 YEGVDRSAK-----PQLPMIAINTTAGTASEMTRFCIITDEARHIKMAIVDKHVTPLLSV 174
Query: 200 IDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVW 259
D + +P+ +TA +G D HA+E++ ++ T P++D
Sbjct: 175 NDSSLMIGMPKSLTAATGMDALTHAIEAYVSIAAT-------------------PITDAC 215
Query: 260 ARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKT 319
A A+ I + AV + + +AR M A +AG+ F NA + H +++ + G
Sbjct: 216 ALKAVTMIAENLPLAVEDGSNAKAREAMAYAQFLAGMAFNNASLGYVHAMAHQLGG---- 271
Query: 320 FHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKAD 375
F+ +PHG+ + P V F + + R + A +G +V+ A+
Sbjct: 272 FYN---------LPHGVCNAVLLPHVQVFNSKVAAARLRDCAAAMGVNVTGKNDAE 318
Score = 97.3 bits (242), Expect = 9e-22
Identities = 63/256 (24%), Positives = 110/256 (42%), Gaps = 32/256 (12%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
A+ TT+GT SE T I E K I ++ + P L + D + +P+ +TA +G D
Sbjct: 135 AINTTAGTASEMTRFCIITDEARHIKMAIVDKHVTPLLSVNDSSLMIGMPKSLTAATGMD 194
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
HA+E++ ++ T P++D A A+ I + AV +
Sbjct: 195 ALTHAIEAYVSIAAT-------------------PITDACALKAVTMIAENLPLAVEDGS 235
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
+ +AR M A +AG+ F NA + H +++ + G F+ +PHG+
Sbjct: 236 NAKAREAMAYAQFLAGMAFNNASLGYVHAMAHQLGG----FYN---------LPHGVCNA 282
Query: 556 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKV 615
+ P V F + + R + A +G +V+ A+ + + +R ++ I GL+
Sbjct: 283 VLLPHVQVFNSKVAAARLRDCAAAMGVNVTGKNDAEGAEACINAIRELAKKVDIPAGLRD 342
Query: 616 LGYTSADIPALVTGTL 631
L D L T L
Sbjct: 343 LNVKEEDFAVLATNAL 358
>gnl|CDD|211989 TIGR04266, NDMA_methanol, NDMA-dependent methanol dehydrogenase.
Members of this family belong to the iron-dependent
alcohol dehydrogenase family (see pfam00465). The
NADP(H) cofactor is bound too tightly for exchange
(although non-convalently), so enzymatic activity
depends on a second substrate or electron carrier. The
radical SAM-modified natural product mycofactocin is
proposed to fill this role.
Length = 420
Score = 112 bits (282), Expect = 1e-26
Identities = 98/351 (27%), Positives = 156/351 (44%), Gaps = 45/351 (12%)
Query: 33 IGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPT 92
+G G +G++ N+ +R +MT L ++ + GV+ L+DKV P
Sbjct: 21 LGVGAHDIIGVEAKNLGFKRTLLMTT-GLRGSGIIEELKGKIEYQGVEVVLYDKVESNPK 79
Query: 93 GDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVT 152
+ +EA +S +CD+ I++GGGS D K A + A +N G K
Sbjct: 80 DYNVMEAAALYQSEKCDSIISIGGGSSHDAAKGARVVI----AHDGRNINEFEGFAKSTN 135
Query: 153 VPLKPLIAIPTTSGTGSETTGVSIF----DYEPLKAKTGIANRALKPTLGLIDPLHTLSL 208
P IA+ TT+GTGSET+ + D + G + A TL + DPL +
Sbjct: 136 KQNPPHIAVSTTAGTGSETSWAYVITDTSDMDQPHKWVGF-DEATIVTLAIDDPLLYYTC 194
Query: 209 PERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIR 268
P+ TAY GFDV H E PY R P L A ++++ +
Sbjct: 195 PQHFTAYCGFDVLAHGSE-----PYVSRLDFA--PSLGNAL------------YSVELVA 235
Query: 269 QYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDD 328
++ + AV+ +L+AR M A +AG F + G+ + H +S+ +S + D
Sbjct: 236 KHLREAVFEPRNLKAREGMMNAQYIAGQAFNSGGLGIVHSISHAVS---------AFFDS 286
Query: 329 HPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSR---VKKADA 376
H HGL+ ++ P V+ + S ER+ + A +G D V+ ADA
Sbjct: 287 H----HGLNNAIALPRVWEYNLPSRYERYAQLATAMGVDTRNMTTVQAADA 333
Score = 79.3 bits (195), Expect = 1e-15
Identities = 65/225 (28%), Positives = 101/225 (44%), Gaps = 40/225 (17%)
Query: 376 AVPTTSGTGSETTGVSIF----DYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAY 431
AV TT+GTGSET+ + D + G + A TL + DPL + P+ TAY
Sbjct: 143 AVSTTAGTGSETSWAYVITDTSDMDQPHKWVGF-DEATIVTLAIDDPLLYYTCPQHFTAY 201
Query: 432 SGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAV 491
GFDV H E PY R P L A ++++ + ++ + AV
Sbjct: 202 CGFDVLAHGSE-----PYVSRLDFA--PSLGNAL------------YSVELVAKHLREAV 242
Query: 492 YNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 551
+ +L+AR M A +AG F + G+ + H +S+ +S + D H HG
Sbjct: 243 FEPRNLKAREGMMNAQYIAGQAFNSGGLGIVHSISHAVS---------AFFDSH----HG 289
Query: 552 LSVVMSAPAVFNFTAASSPERHIEAAELLGADVSR---VKKADAG 593
L+ ++ P V+ + S ER+ + A +G D V+ ADA
Sbjct: 290 LNNAIALPRVWEYNLPSRYERYAQLATAMGVDTRNMTTVQAADAA 334
>gnl|CDD|173936 cd08177, MAR, Maleylacetate reductase is involved in many aromatic
compounds degradation pathways of aerobic microbes.
Maleylacetate reductases (MAR) play an important role in
the degradation of aromatic compounds in aerobic
microbes. In fungi and yeasts, the enzymes are involved
in the catabolism of compounds such as phenol, tyrosine,
benzoate, 4-hydroxybenzoate and resorcinol. In bacteria,
the enzymes contribute to the degradation of resorcinol,
2,4-dihydroxybenzoate ([beta]-resorcylate) and
2,6-dihydroxybenzoate ([gamma]-resorcylate) via
hydroxyquinol and maleylacetate. Maleylacetate
reductases catalyze NADH- or NADPH-dependent reduction,
at the carbon-carbon double bond, of maleylacetate or
2-chloromaleylacetate to 3-oxoadipate. In the case of
2-chloromaleylacetate, Maleylacetate reductases
initially catalyses the NAD(P)H-dependent dechlorination
to maleylacetate, which is then reduced to 3-oxoadipate.
This enzyme is a homodimer. It is inhibited by
thiol-blocking reagents such as p-chloromercuribenzoate
and Hg++, indicating that the cysteine residue is
probably necessary for the catalytic activity of
maleylacetate reductase.
Length = 337
Score = 98.0 bits (245), Expect = 4e-22
Identities = 88/342 (25%), Positives = 126/342 (36%), Gaps = 70/342 (20%)
Query: 34 GPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR----V 89
GPG + ++ + A R V+T P L+ + +L FD V
Sbjct: 7 GPGALAALAAELERLGASRALVLTTPSLATKL-AERVASALGDRVAGT--FDGAVMHTPV 63
Query: 90 EPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGK 149
E T A R D +A+GGGS ID KA L
Sbjct: 64 EVTE----AAVAAAREAGADGIVAIGGGSTIDLAKAIAL--------------------- 98
Query: 150 PVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLP 209
L P+IAIPTT +GSE T I KT + + P + DP TL+ P
Sbjct: 99 --RTGL-PIIAIPTTL-SGSEMT--PIAGVTENGVKTTGRDPEVLPRTVIYDPELTLTTP 152
Query: 210 ERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQ 269
R+ SG HA+E AL Y NP+ D+ A ++ + +
Sbjct: 153 RRLWLSSGIRAIDHAVE---AL-YAPDA---------------NPIVDLLAEEGIRALAE 193
Query: 270 YFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDH 329
R + DDL+AR + + G G+ G+ L H L + + G TF
Sbjct: 194 ALPRIKADPDDLDARLDALYGAWLCGTCLGSVGMGLSHKLGHVLGG---TFG-------- 242
Query: 330 PIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRV 371
+PH + + P V F A ++PE A LG +
Sbjct: 243 --LPHAETSCIVLPHVLAFNAPAAPEALARLARALGLGAADA 282
Score = 69.9 bits (172), Expect = 7e-13
Identities = 75/286 (26%), Positives = 106/286 (37%), Gaps = 61/286 (21%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
A+PTT +GSE T I KT + + P + DP TL+ P R+ SG
Sbjct: 106 AIPTTL-SGSEMT--PIAGVTENGVKTTGRDPEVLPRTVIYDPELTLTTPRRLWLSSGIR 162
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
HA+E AL Y NP+ D+ A ++ + + R + D
Sbjct: 163 AIDHAVE---AL-YAPDA---------------NPIVDLLAEEGIRALAEALPRIKADPD 203
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
DL+AR + + G G+ G+ L H L + + G TF +PH +
Sbjct: 204 DLDARLDALYGAWLCGTCLGSVGMGLSHKLGHVLGG---TFG----------LPHAETSC 250
Query: 556 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKV 615
+ P V F A ++PE A LG ADA LAD R + L
Sbjct: 251 IVLPHVLAFNAPAAPEALARLARALGLGA-----ADAADALADLAR----SLGAPTSLAD 301
Query: 616 LGYTSADIPALVTGTLPQHRITKLA-------PREQSEEDLANLFE 654
LG DI R +LA PR + + L E
Sbjct: 302 LGVPRDDID----------RAAELALADPYANPRPLERDAVRALLE 337
>gnl|CDD|224890 COG1979, COG1979, Uncharacterized oxidoreductases, Fe-dependent
alcohol dehydrogenase family [Energy production and
conversion].
Length = 384
Score = 97.4 bits (243), Expect = 9e-22
Identities = 76/291 (26%), Positives = 122/291 (41%), Gaps = 46/291 (15%)
Query: 78 GVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCK---AANLYYCDPE 134
G++ F V P ++ ++A + + D +AVGGGSVID K AA Y DP
Sbjct: 56 GIEVIEFGGVEPNPRLETLMKAVEICKEENIDFLLAVGGGSVIDGTKFIAAAAKYDGDPW 115
Query: 135 AEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALK 194
K + L P+ + T TGSE ++ E K K G + +
Sbjct: 116 DILT--------KKHKIKDAL-PIGTVLTLPATGSEMNAGAVITNEETKEKLGFGSPLVF 166
Query: 195 PTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNP 254
P ++DP T +LP+R TA D F H E + P
Sbjct: 167 PKFSVLDPEVTYTLPKRQTANGVVDAFSHVFEQYFTYPV------------------NAK 208
Query: 255 VSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVH---LCHGLSY 311
+ D +A L+T+ +Y + + + ++ EAR+++ A+ MA G AGV H + +
Sbjct: 209 LQDRFAEGILRTLIEYGPKLLEDPENYEARANLMWAATMALNGLIGAGVPQDWATHMIGH 268
Query: 312 PISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAE 362
++ A Y DH GL++V+ PA N+T + ++ AE
Sbjct: 269 ELT--------ALYDIDHAQ---GLAIVL--PAWMNYTLDQKRAKLLQYAE 306
Score = 74.6 bits (184), Expect = 3e-14
Identities = 69/297 (23%), Positives = 122/297 (41%), Gaps = 52/297 (17%)
Query: 375 DAVP-----TTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVT 429
DA+P T TGSE ++ E K K G + + P ++DP T +LP+R T
Sbjct: 126 DALPIGTVLTLPATGSEMNAGAVITNEETKEKLGFGSPLVFPKFSVLDPEVTYTLPKRQT 185
Query: 430 AYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKR 489
A D F H E + P + D +A L+T+ +Y +
Sbjct: 186 ANGVVDAFSHVFEQYFTYPV------------------NAKLQDRFAEGILRTLIEYGPK 227
Query: 490 AVYNQDDLEARSHMHLASAMAGVGFGNAGVH---LCHGLSYPISGNVKTFHPAGYSDDHP 546
+ + ++ EAR+++ A+ MA G AGV H + + ++ A Y DH
Sbjct: 228 LLEDPENYEARANLMWAATMALNGLIGAGVPQDWATHMIGHELT--------ALYDIDHA 279
Query: 547 IIPHGLSVVMSAPAVFNFTAASSPERHIEAAELL-----GADVSRVKKADAGKLLADTVR 601
GL++V+ PA N+T + ++ AE + G+D + +A R
Sbjct: 280 Q---GLAIVL--PAWMNYTLDQKRAKLLQYAERVWGITEGSDDEIIDEA------IAKTR 328
Query: 602 GYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAP-REQSEEDLANLFENSM 657
+ + + + L G IP L+ L +H + L + + +D+ + E ++
Sbjct: 329 EFFESLGVPTRLSDYGIDEEKIPLLLE-KLEKHGMGTLGEFGDLNLQDVREILEAAL 384
>gnl|CDD|173943 cd08184, Fe-ADH3, Iron-containing alcohol dehydrogenases-like.
Iron-containing alcohol dehydrogenase-like. Proteins of
this family have not been characterized. Their specific
function is unknown. The protein structure represents a
dehydroquinate synthase-like fold and is belonged to the
iron-containing alcohol dehydrogenase-like superfamily.
They are distinct from other alcohol dehydrogenases
which contain different protein domains. Alcohol
dehydrogenase catalyzes the reduction of acetaldehyde to
alcohol with NADP as cofactor. Its activity requires
iron or zinc ions. Members of this family are mainly
found in bacteria.
Length = 347
Score = 75.9 bits (187), Expect = 9e-15
Identities = 70/240 (29%), Positives = 101/240 (42%), Gaps = 42/240 (17%)
Query: 90 EPTGDSFLEATKFVRSV---QCDAFIAVGGGSVIDTCKAANLYYCDP-EAEFLDYVNAPI 145
EP D T V+S A + +GGGS +D KA + +P AE DY +
Sbjct: 61 EPKTDQIDALTAQVKSFDGKLPCAIVGIGGGSTLDVAKAVSNMLTNPGSAE--DYQGWDL 118
Query: 146 GKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLI-DPLH 204
V P I IPT SGTG+E + ++ K G+ N +I DP
Sbjct: 119 -----VKNPAVYKIGIPTLSGTGAEASRTAVLMGPERK--LGM-NSDFTMFDQIILDPEL 170
Query: 205 TLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFAL 264
T +P Y+G D + H +ES L Y+ N VSD +A AL
Sbjct: 171 TAGVPRDQYFYTGMDCYIHCIES-----------------LTGTYR--NEVSDAYAEKAL 211
Query: 265 QTIRQYFKRAVYNQDDL---EARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFH 321
+ RQ V+ DD+ E + +AS + G+ N+ V +CH SY +S ++ H
Sbjct: 212 ELCRQ-----VFLSDDMMSEENDDKLMMASYLGGMSIANSQVGVCHAASYGLSLHLGYHH 266
Score = 58.2 bits (141), Expect = 5e-09
Identities = 47/166 (28%), Positives = 72/166 (43%), Gaps = 31/166 (18%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLI-DPLHTLSLPERVTAYSGF 434
+PT SGTG+E + ++ K G+ N +I DP T +P Y+G
Sbjct: 128 GIPTLSGTGAEASRTAVLMGPERK--LGM-NSDFTMFDQIILDPELTAGVPRDQYFYTGM 184
Query: 435 DVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQ 494
D + H +ES L Y+ N VSD +A AL+ RQ V+
Sbjct: 185 DCYIHCIES-----------------LTGTYR--NEVSDAYAEKALELCRQ-----VFLS 220
Query: 495 DDL---EARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFH 537
DD+ E + +AS + G+ N+ V +CH SY +S ++ H
Sbjct: 221 DDMMSEENDDKLMMASYLGGMSIANSQVGVCHAASYGLSLHLGYHH 266
>gnl|CDD|185092 PRK15138, PRK15138, aldehyde reductase; Provisional.
Length = 387
Score = 62.1 bits (151), Expect = 3e-10
Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 31/232 (13%)
Query: 77 HGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCK--AANLYY---C 131
G+ F + PT ++ ++A K VR + +AVGGGSV+D K AA Y
Sbjct: 55 KGMDVLEFGGIEPNPTYETLMKAVKLVREEKITFLLAVGGGSVLDGTKFIAAAANYPENI 114
Query: 132 DPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANR 191
DP L+ I P+ L T TGSE+ ++ + K +
Sbjct: 115 DP-WHILETGGKEIKSAIPMGSVL-------TLPATGSESNAGAVISRKTTGDKQAFHSP 166
Query: 192 ALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQG 251
++P ++DP++T +LP R A D F H +E + P +
Sbjct: 167 HVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTYPVDAK--------------- 211
Query: 252 QNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGV 303
+ D +A L T+ + +A+ ++ + R+++ A+ A G AGV
Sbjct: 212 ---IQDRFAEGILLTLIEEGPKALKEPENYDVRANVMWAATQALNGLIGAGV 260
Score = 57.1 bits (138), Expect = 1e-08
Identities = 69/304 (22%), Positives = 125/304 (41%), Gaps = 49/304 (16%)
Query: 344 AVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTG 403
A N+ P HI E G ++ +V T TGSE+ ++ + K
Sbjct: 106 AAANYPENIDP-WHI--LETGGKEIKSAIPMGSVLTLPATGSESNAGAVISRKTTGDKQA 162
Query: 404 IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRP 463
+ ++P ++DP++T +LP R A D F H +E + P +
Sbjct: 163 FHSPHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTYPVDAK----------- 211
Query: 464 AYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVH--- 520
+ D +A L T+ + +A+ ++ + R+++ A+ A G AGV
Sbjct: 212 -------IQDRFAEGILLTLIEEGPKALKEPENYDVRANVMWAATQALNGLIGAGVPQDW 264
Query: 521 LCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELL 580
H L + ++ A + DH L++V+ PA++N + + ++ AE +
Sbjct: 265 ATHMLGHELT--------AMHGLDH---AQTLAIVL--PALWNEKRDTKRAKLLQYAERV 311
Query: 581 -----GADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHR 635
G+D R+ A A R + +QM + L G + IPAL+ L +H
Sbjct: 312 WNITEGSDDERIDAAIAA------TRNFFEQMGVPTRLSDYGLDGSSIPALL-KKLEEHG 364
Query: 636 ITKL 639
+T+L
Sbjct: 365 MTQL 368
>gnl|CDD|222318 pfam13685, Fe-ADH_2, Iron-containing alcohol dehydrogenase.
Length = 247
Score = 55.6 bits (135), Expect = 1e-08
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 32 RIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEP 91
IGPG +G + + ++V V+ D + K A + +SL GV+ + +
Sbjct: 1 VIGPGALSRLGEILAKLGGKKVLVVADENTYKAA-GEKVEESLKEAGVEVAIVLPD-GDA 58
Query: 92 TGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAA 126
++ +E DA +AVGGG++ D K A
Sbjct: 59 DEET-VEKLVEALERDADAVVAVGGGTINDIAKYA 92
>gnl|CDD|173929 cd08170, GlyDH, Glycerol dehydrogenases (GlyDH) catalyzes oxidation
of glycerol to dihydroxyacetone in glycerol
dissmilation. Glycerol dehydrogenases (GlyDH) is a key
enzyme in the glycerol dissimilation pathway . In
anaerobic conditions, many microorganisms utilize
glycerol as a source of carbon through coupled oxidative
and reductive pathways. One of the pathways involves the
oxidation of glycerol to dihydroxyacetone with the
reduction of NAD+ to NADH catalyzed by glycerol
dehydrogenases. Dihydroxyacetone is then phosphorylated
by dihydroxyacetone kinase and enters the glycolytic
pathway for further degradation. The activity of GlyDH
is zinc-dependent. The zinc ion plays a role in
stabilizing an alkoxide intermediate at the active site.
Length = 351
Score = 48.3 bits (116), Expect = 8e-06
Identities = 34/145 (23%), Positives = 58/145 (40%), Gaps = 29/145 (20%)
Query: 34 GPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLD-SLTRHGVKFELFDKVRVEPT 92
GPG E+G + + +R ++ D + L V A ++ SL G+ F+ E T
Sbjct: 7 GPGALDELGEYLARL-GKRALIIADEFVLDL--VGAKIEESLAAAGIDAR-FEVFGGECT 62
Query: 93 GDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVT 152
+ R D I +GGG +DT KA A++L
Sbjct: 63 RAEIERLAEIARDNGADVVIGIGGGKTLDTAKAV--------ADYLG------------- 101
Query: 153 VPLKPLIAIPTTSGTGSETTGVSIF 177
P++ +PT + T + T+ +S+
Sbjct: 102 ---APVVIVPTIASTDAPTSALSVI 123
>gnl|CDD|173932 cd08173, Gro1PDH, Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH)
catalyzes the reversible conversion between
dihydroxyacetone phosphate and glycerol-1-phosphate
using either NADH or NADPH as a coenzyme.
Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC
1.1.1.261) plays an important role in the formation of
the enantiomeric configuration of the glycerophosphate
backbone (sn-glycerol-1-phosphate) of archaeal ether
lipids. It catalyzes the reversible conversion between
dihydroxyacetone phosphate and glycerol-1-phosphate
using either NADH or NADPH as a coenzyme. The activity
is zinc-dependent. One characteristic feature of archaea
is that their cellular membrane has an ether linkage
between the glycerol backbone and the hydrocarbon
residues. The polar lipids of the members of Archaea
consist of di- and tetraethers of glycerol with
isoprenoid alcohols bound at the sn-2 and sn-3 positions
of the glycerol moiety. The archaeal polar lipids have
the enantiomeric configuration of a glycerophosphate
backbone [sn- glycerol-1-phosphate (G-1-P)] that is the
mirror image structure of the bacterial or eukaryal
counterpart [sn-glycerol- 3-phosphate (G-3-P)]. The
absolute stereochemistry of the glycerol moiety in all
archaeal polar lipids is opposite to that of glycerol
ester lipids in bacteria and eukarya. This protein
family is only found in Archaea.
Length = 339
Score = 44.2 bits (105), Expect = 1e-04
Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 22/143 (15%)
Query: 33 IGPGVTREVGMDMVN--MKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVE 90
+G GV ++ +++ + RV V+T P +A K L G + + +
Sbjct: 7 VGHGVLEKIP-NVLRDLLLGGRVLVVTGPTTKSIA-GKKVEALLEDEGEVDVV---IVED 61
Query: 91 PTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFL--------DYVN 142
T + + R + D I VGGG VID K + F+ D +
Sbjct: 62 ATYEEVEKVESSARDIGADFVIGVGGGRVIDVAK---VAAYKLGIPFISVPTAASHDGIA 118
Query: 143 API----GKGKPVTVPLKPLIAI 161
+P G GKP+++ KP +A+
Sbjct: 119 SPRASIKGNGKPISIKAKPPLAV 141
>gnl|CDD|173931 cd08172, GlyDH-like1, Glycerol dehydrogenases-like. Glycerol
dehydrogenases-like. The proteins in this family have
not been characterized, but they show sequence homology
with glycerol dehydrogenase. Glycerol dehydrogenases
(GlyDH) is a key enzyme in the glycerol dissimilation
pathway. In anaerobic conditions, many microorganisms
utilize glycerol as a source of carbon through coupled
oxidative and reductive pathways. One of the pathways
involves the oxidation of glycerol to dihydroxyacetone
with the reduction of NAD+ to NADH catalyzed by glycerol
dehydrogenases. Dihydroxyacetone is then phosphorylated
by dihydroxyacetone kinase and enters the glycolytic
pathway for further degradation. The activity of GlyDH
is zinc-dependent. The zinc ion plays a role in
stabilizing an alkoxide intermediate at the active site.
Length = 347
Score = 42.6 bits (101), Expect = 4e-04
Identities = 32/149 (21%), Positives = 49/149 (32%), Gaps = 37/149 (24%)
Query: 32 RIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEP 91
G G E+G + +R ++T P A L E F +
Sbjct: 6 ISGEGALDELGELLKRF-GKRPLIVTGPR-----SWAAAKPYLPESLAAGEAFV---LRY 56
Query: 92 TGDSFLEA----TKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGK 147
G+ E + D I +GGG V+DT KA A+ L
Sbjct: 57 DGECSEENIERLAAQAKENGADVIIGIGGGKVLDTAKAV--------ADRLGV------- 101
Query: 148 GKPVTVPLKPLIAIPTTSGTGSETTGVSI 176
P+I +PT + T + T +S+
Sbjct: 102 ---------PVITVPTLAATCAAWTPLSV 121
>gnl|CDD|223448 COG0371, GldA, Glycerol dehydrogenase and related enzymes [Energy
production and conversion].
Length = 360
Score = 41.9 bits (99), Expect = 7e-04
Identities = 38/171 (22%), Positives = 59/171 (34%), Gaps = 31/171 (18%)
Query: 33 IGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHG-VKFELFDKVRVEP 91
G G ++ ++ + R V+T + +A + SL G V +F E
Sbjct: 13 QGKGAINKLLEVLLKLGLSRALVVTGENTYAIA-GEKVEKSLKDEGLVVHVVFVG---EA 68
Query: 92 TGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPV 151
+ + D I VGGG IDT KAA A L
Sbjct: 69 SEEEVERLAAEAGEDGADVVIGVGGGKTIDTAKAA--------AYRLG------------ 108
Query: 152 TVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDP 202
P I++PT + T + T+ V+ Y K +A P ++D
Sbjct: 109 ----LPFISVPTIASTDAITSPVASVIYNGKGDKYSFLAKA--PDAVIVDT 153
>gnl|CDD|173933 cd08174, G1PDH-like, Glycerol-1-phosphate dehydrogenase-like.
Glycerol-1-phosphate dehydrogenase-like. The proteins of
this family have not been characterized. The protein
sequences have high similarity with that of
glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays
a role in the synthesis of phosphoglycerolipids in
Gram-positive bacterial species. It catalyzes the
reversibly reduction of dihydroxyacetone phosphate
(DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent
manner. Its activity requires Ni++ ion. This family is
bacteria specific.
Length = 331
Score = 41.1 bits (97), Expect = 0.001
Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 15/101 (14%)
Query: 31 IRIGPGVTREVG--MDMVNMKAQRVCVMTDPHL-SKLAPVKATLDSLTRHG-VKFELFDK 86
+ IG G +G + N RV V++ P + ++A SL + E +
Sbjct: 4 LDIGEGAIARLGELLSDRNPNFGRVAVVSGPGVGEQVAE------SLKTSFSAEVEAVE- 56
Query: 87 VRVEPTGDSFLEATKFVRSV-QCDAFIAVGGGSVIDTCKAA 126
E + E RS+ DA + +GGG VID K A
Sbjct: 57 ---EVSNSDAEEIGARARSIPNVDAVVGIGGGKVIDVAKYA 94
>gnl|CDD|173930 cd08171, GlyDH-like2, Glycerol dehydrogenase-like. Glycerol
dehydrogenases-like. The proteins in this family have
not been characterized, but they show sequence homology
with glycerol dehydrogenase. Glycerol dehydrogenases
(GlyDH) is a key enzyme in the glycerol dissimilation
pathway. In anaerobic conditions, many microorganisms
utilize glycerol as a source of carbon through coupled
oxidative and reductive pathways. One of the pathways
involves the oxidation of glycerol to dihydroxyacetone
with the reduction of NAD+ to NADH catalyzed by glycerol
dehydrogenases. Dihydroxyacetone is then phosphorylated
by dihydroxyacetone kinase and enters the glycolytic
pathway for further degradation. The activity of GlyDH
is zinc-dependent. The zinc ion plays a role in
stabilizing an alkoxide intermediate at the active site.
Length = 345
Score = 40.3 bits (95), Expect = 0.002
Identities = 21/80 (26%), Positives = 29/80 (36%), Gaps = 26/80 (32%)
Query: 97 LEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLK 156
L+ V+ + D AVGGG IDT K A+ L K
Sbjct: 70 LKKNPAVQ--EADMIFAVGGGKAIDTVKVL--------ADKLG----------------K 103
Query: 157 PLIAIPTTSGTGSETTGVSI 176
P+ PT + + T VS+
Sbjct: 104 PVFTFPTIASNCAAVTAVSV 123
>gnl|CDD|181843 PRK09423, gldA, glycerol dehydrogenase; Provisional.
Length = 366
Score = 36.7 bits (86), Expect = 0.034
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 5/94 (5%)
Query: 34 GPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLD-SLTRHGVKFELFDKVRVEPT 92
G G +G + + +R V+ D + + V ++ SL G+ F+ E +
Sbjct: 14 GKGALARLG-EYLKPLGKRALVIADEFVLGI--VGDRVEASLKEAGLTVV-FEVFNGECS 69
Query: 93 GDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAA 126
+ CD I +GGG +DT KA
Sbjct: 70 DNEIDRLVAIAEENGCDVVIGIGGGKTLDTAKAV 103
>gnl|CDD|173954 cd08195, DHQS, Dehydroquinate synthase (DHQS) catalyzes the
conversion of DAHP to DHQ in shikimate pathway for
aromatic compounds synthesis. Dehydroquinate synthase
(DHQS) catalyzes the conversion of
3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to
dehydroquinate (DHQ) in the second step of the shikimate
pathway. This pathway, which involves seven sequential
enzymatic steps in the conversion of erythrose
4-phosphate and phosphoenolpyruvate into chorismate for
subsequent synthesis of aromatic compounds, is found in
bacteria, microbial eukaryotes, and plants, but not in
mammals. Therefore, enzymes of this pathway are
attractive targets for the development of non-toxic
antimicrobial compounds, herbicides and anti-parasitic
agents. The activity of DHQS requires nicotinamide
adenine dinucleotide (NAD) as cofactor. A single active
site in DHQS catalyzes five sequential reactions
involving alcohol oxidation, phosphate elimination,
carbonyl reduction, ring opening, and intramolecular
aldol condensation. The binding of substrates and
ligands induces domain conformational changes. In some
fungi and protozoa, this domain is fused with the other
four domains in shikimate pathway and forms a
penta-domain AROM protein, which catalyzes steps 2-6 in
the shikimate pathway.
Length = 345
Score = 36.3 bits (85), Expect = 0.049
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 22/106 (20%)
Query: 28 SSTIRIGPGVTREVG-MDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDK 86
S I IG G+ +E+G + K ++ ++TD +++ L + +L G + E+
Sbjct: 1 SYPIYIGSGLLKELGELLAKLPKGSKILIVTDENVAPLYL-EKLKAALEAAGFEVEVI-- 57
Query: 87 VRVEPTGD------------SFLEATKFVRSVQCDAFIAVGGGSVI 120
V P G+ L R IA+GGG V+
Sbjct: 58 --VIPAGEASKSLETLEKLYDALLEAGLDRK---SLIIALGGG-VV 97
>gnl|CDD|187742 cd09209, Lumazine_synthase-I, lumazine synthase
(6,7-dimethyl-8-ribityllumazine synthase, LS), catalyzes
the penultimate step in the biosynthesis of riboflavin
(vitamin B2); type-I. Type-I LS, also known as RibH1,
catalyzes the penultimate step in the biosynthesis of
riboflavin in plants and microorganisms. LS catalyse the
formation of 6,7-dimethyl-8-ribityllumazine by the
condensation of
5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione with
3,4-dihydroxy- 2-butanone-4-phosphate. Subsequently, the
lumazine intermediate dismutates to yield riboflavin and
5-amino-6-ribitylamino- 2,4(1H,3H)-pyrimidinedione, in a
reaction catalyzed by riboflavin synthase synthase (RS);
RS belongs to a different family of the
Lumazine-synthase-like superfamily. Riboflavin is the
precursor of flavin mononucleotide (FMN) and flavin
adenine dinucleotide (FAD) which are essential cofactors
for the catalysis of a wide range of redox reactions.
These cofactors are also involved in many other
processes involving DNA repair, circadian time-keeping,
light sensing, and bioluminescence. Riboflavin is
biosynthesized in plants, fungi and certain
microorganisms; as animals lack the necessary enzymes to
produce this vitamin, they acquire it from dietary
sources. Type II LSs are distinct from type-I LS not
only in protein sequence, but in that they exhibit
different quaternary assemblies; type-I LSs form
pentamers. The pathogen Brucella spp. encode both a
Type-I LS and a Type-II LS called RibH1 and RibH2,
respectively. RibH1/type-I LS appears to be the
functional LS in Brucella spp., whereas RibH2/type-II LS
has much lower catalytic activity as LS. The pathogen
Brucella spp. have both a type-I LS and a type-II LS
called RibH1 and RibH2, respectively. RibH1/type-I LS
appears to be a functional LS in Brucella spp., whereas
RibH2/type-II LS has much lower catalytic activity as
LS.
Length = 133
Score = 34.3 bits (80), Expect = 0.052
Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 6/52 (11%)
Query: 67 VKATLDSLTRHGVKFELFDKVRVEPTGDSF---LEATKFVRSVQCDAFIAVG 115
++ LD+L RHGVK E D VRV P G +F L A + RS + DA IA+G
Sbjct: 17 LEGALDALKRHGVKEENIDVVRV-P-G-AFEIPLAAKRLARSGKYDAIIALG 65
>gnl|CDD|173960 cd08550, GlyDH-like, Glycerol_dehydrogenase-like. Families of
proteins related to glycerol dehydrogenases. Glycerol
dehydrogenases (GlyDH) is a key enzyme in the glycerol
dissimilation pathway. In anaerobic conditions, many
microorganisms utilize glycerol as a source of carbon
through coupled oxidative and reductive pathways. One of
the pathways involves the oxidation of glycerol to
dihydroxyacetone with the reduction of NAD+ to NADH
catalyzed by glycerol dehydrogenases. Dihydroxyacetone
is then phosphorylated by dihydroxyacetone kinase and
enters the glycolytic pathway for further degradation.
The activity of GlyDH is zinc-dependent. The zinc ion
plays a role in stabilizing an alkoxide intermediate at
the active site. Some subfamilies have not been
characterized till now.
Length = 349
Score = 35.6 bits (82), Expect = 0.075
Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 25/109 (22%)
Query: 103 VRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIP 162
+ D I VGGG +DT KA A+ LD KP++ +P
Sbjct: 73 AEEQEADVIIGVGGGKTLDTAKAV--------ADRLD----------------KPIVIVP 108
Query: 163 TTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPER 211
T + T + ++ +S+ Y + P L L+D P
Sbjct: 109 TIASTCAASSNLSVI-YSDDGEFARYDFQKRNPDLVLVDTEVIAQSPAE 156
>gnl|CDD|234565 PRK00002, aroB, 3-dehydroquinate synthase; Reviewed.
Length = 358
Score = 35.5 bits (83), Expect = 0.087
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 22/107 (20%)
Query: 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKV 87
S I IG G+ E+G + +K ++V ++TD ++ L + SL G + ++
Sbjct: 9 SYPIIIGKGLLSELGELLAPLKGKKVAIVTDETVAPLYL-EKLRASLEAAGFEVDVV--- 64
Query: 88 RVEPTGDSFLEATKFVRSVQC-------------DAFIAVGGGSVID 121
V P G E K + +++ D IA+GGG + D
Sbjct: 65 -VLPDG----EQYKSLETLEKIYDALLEAGLDRSDTLIALGGGVIGD 106
>gnl|CDD|223132 COG0054, RibH, Riboflavin synthase beta-chain [Coenzyme
metabolism].
Length = 152
Score = 31.4 bits (72), Expect = 0.70
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 67 VKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVG 115
++ +D+L RHG + D VRV + L A K R+ + DA +A+G
Sbjct: 31 LEGAVDALKRHGADVDNIDVVRVPGAFEIPLAAKKLARTGKYDAVVALG 79
>gnl|CDD|129245 TIGR00139, h_aconitase, homoaconitase. Homoaconitase is known only
as a fungal enzyme from two species, where it is part of
an unusual lysine biosynthesis pathway. Because This
model is based on just two sequences from a narrow
taxonomic range, it may not recognize distant orthologs,
should any exist. Homoaconitase, aconitase, and
3-isopropylmalate dehydratase have similar overall
structures, but 3-isopropylmalate dehydratase is split
into large (leuC) and small (leuD) chains in eubacteria.
Several pairs of archaeal proteins resemble leuC and
leuD over their lengths but are even closer to the
respective domains of homoaconitase, and their identity
is uncertain [Amino acid biosynthesis, Aspartate
family].
Length = 712
Score = 32.7 bits (74), Expect = 0.73
Identities = 37/158 (23%), Positives = 57/158 (36%), Gaps = 18/158 (11%)
Query: 342 APAV-FNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKA 400
AP V F AAS E EAA ++ +A A+P +G G G+ EP +
Sbjct: 360 APGVEFYIAAASIEE---EAAAEGNGAWEKLLEAGAIPLPAGCGP-CIGLGAGLLEPGEV 415
Query: 401 KTGIANRALKPTLGLIDPLHTLSLPERVTAYS-----GFDVFCHALESFTALPYTE---- 451
+NR K +G D L+ P V A + + E +T + + E
Sbjct: 416 GISASNRNFKGRMGSKDAKAYLASPAVVAASALLGKISGPAEVLSPEGWTEIIFGEGDGI 475
Query: 452 ----RTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQ 485
R + L + + V+D A + Q
Sbjct: 476 KEEDRMLTNEEALEKIIGIIDDLVADEEKNAASEAPAQ 513
>gnl|CDD|153220 cd01749, GATase1_PB, Glutamine Amidotransferase (GATase_I) involved
in pyridoxine biosynthesis. Glutamine Amidotransferase
(GATase_I) involved in pyridoxine biosynthesis.
Glutamine amidotransferase (GATase) activity involves
the removal of the ammonia group from a glutamate
molecule and its subsequent transfer to a specific
substrate, thus creating a new carbon-nitrogen group on
the substrate. This group contains proteins like
Bacillus subtilus YaaE and Plasmodium falciparum Pdx2
which are members of the triad glutamine
aminotransferase family and function in a pathway for
the biosynthesis of vitamin B6.
Length = 183
Score = 31.3 bits (72), Expect = 0.92
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 12/66 (18%)
Query: 357 HIEAAELLGADVSRVKKADAVPTTSG---TGSETTGVSIF-----DYEPLKAKTGIANRA 408
HI A E LG +V V+ + + G G E+T + +PL+ RA
Sbjct: 13 HIRALERLGVEVIEVRTPEDLEGIDGLIIPGGESTTIGKLLRRTGLLDPLREF----IRA 68
Query: 409 LKPTLG 414
KP G
Sbjct: 69 GKPVFG 74
>gnl|CDD|179139 PRK00843, egsA, NAD(P)-dependent glycerol-1-phosphate
dehydrogenase; Reviewed.
Length = 350
Score = 31.4 bits (72), Expect = 1.6
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 13/99 (13%)
Query: 33 IGPGVTREVGMDMVNMK-AQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRV-- 89
+G GV ++G ++K R ++T P K+A ++L G V V
Sbjct: 16 VGHGVLDDIGDVCSDLKLTGRALIVTGPTTKKIA-GDRVEENLEDAG-------DVEVVI 67
Query: 90 --EPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAA 126
E T + + + + V I VGGG VID K A
Sbjct: 68 VDEATMEEVEKVEEKAKDVNAGFLIGVGGGKVIDVAKLA 106
>gnl|CDD|234362 TIGR03814, Gln_ase, glutaminase A. This family describes the
enzyme glutaminase, from a larger family that includes
serine-dependent beta-lactamases and penicillin-binding
proteins. Many bacteria have two isozymes. This model
is based on selected known glutaminases and their
homologs within prokaryotes, with the exclusion of
highly-derived (long branch) and architecturally varied
homologs, so as to achieve conservative assignments. A
sharp drop in scores occurs below 250, and cutoffs are
set accordingly. The enzyme converts glutamine to
glutamate, with the release of ammonia. Members tend to
be described as glutaminase A (glsA), where B (glsB) is
unknown and may not be homologous (as in Rhizobium
etli). Some species have two isozymes that may both be
designated A (GlsA1 and GlsA2) [Energy metabolism,
Amino acids and amines].
Length = 300
Score = 31.3 bits (72), Expect = 1.6
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 74 LTRHGVKFELFDKVRVEPTGDSF 96
L G E++++V VEP+GD F
Sbjct: 68 LEDLGED-EVWERVGVEPSGDPF 89
>gnl|CDD|234606 PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase;
Provisional.
Length = 154
Score = 30.1 bits (69), Expect = 2.2
Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
Query: 67 VKATLDSLTRHGVKFELFDKVRVEPTGDSF---LEATKFVRSVQCDAFIAVGGGSVI 120
++ LD+L RHGV E D VRV P G +F L A K S + DA IA+ G+VI
Sbjct: 31 LEGALDALKRHGVSEENIDVVRV-P-G-AFEIPLAAKKLAESGKYDAVIAL--GAVI 82
>gnl|CDD|234755 PRK00419, PRK00419, DNA primase small subunit; Reviewed.
Length = 376
Score = 30.4 bits (69), Expect = 3.4
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 18/109 (16%)
Query: 80 KFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLD 139
+F+ + + + + T+F+R DAF +G AA L+ AE +
Sbjct: 225 EFDGIGEGTAKKILKAARDNTEFLRKGNLDAFHGIGPRL------AARLF-----AESVR 273
Query: 140 YVNAPIGKGKPVTVPLKPLIAIPTT--SGTGSETTGVSIFDYE---PLK 183
+ API + PVT+ +K LI +P + +G T + + E PLK
Sbjct: 274 FSKAPIDE--PVTIDIKRLIRLPGSLHGKSGLIVTELDRKNLEDFDPLK 320
>gnl|CDD|201491 pfam00885, DMRL_synthase, 6,7-dimethyl-8-ribityllumazine synthase.
This family includes the beta chain of 6,7-dimethyl-8-
ribityllumazine synthase EC:2.5.1.9, an enzyme involved
in riboflavin biosynthesis. The family also includes a
subfamily of distant archaebacterial proteins that may
also have the same function.
Length = 144
Score = 29.0 bits (66), Expect = 3.8
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 6/52 (11%)
Query: 67 VKATLDSLTRHGVKFELFDKVRVEPTGDSF---LEATKFVRSVQCDAFIAVG 115
++ LD+L RHGV E D VRV P G +F L A K +S + DA +A+G
Sbjct: 22 LEGALDALKRHGVSEEDIDVVRV-P-G-AFELPLAAKKLAKSGRYDAVVALG 70
>gnl|CDD|211550 TIGR00114, lumazine-synth, 6,7-dimethyl-8-ribityllumazine synthase.
This enzyme catalyzes the cyclo-ligation of
3,4-dihydroxy-2-butanone-4-P and
5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione to
form 6,7-dimethyl-8-ribityllumazine, the immediate
precursor of riboflavin. Sometimes referred to as
riboflavin synthase, beta subunit, this should not be
confused with the alpha subunit which carries out the
subsequent reaction. Archaeal members of this family are
considered putative, although included in the seed and
scoring above the trusted cutoff [Biosynthesis of
cofactors, prosthetic groups, and carriers, Riboflavin,
FMN, and FAD].
Length = 138
Score = 28.5 bits (64), Expect = 5.7
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 67 VKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVG 115
+K +D+L R G + + D + V + L K S + DA IA+G
Sbjct: 19 LKGAIDALKRLGAEVDNIDVIWVPGAFELPLAVKKLAESGKYDAVIALG 67
>gnl|CDD|219437 pfam07506, RepB, RepB plasmid partitioning protein. This family
includes proteins with sequence similarity to the RepB
partitioning protein of the large Ti (tumour-inducing)
plasmids of Agrobacterium tumefaciens.
Length = 185
Score = 29.0 bits (65), Expect = 6.6
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 552 LSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADT----VRGYMDQM 607
L V + A F +R +E AELL A V+ A LLADT + +
Sbjct: 58 LKDVETGIAAFGLARKIGRDRWVELAELL-AAAKNVESAYFRALLADTRFSQLVKPLRPK 116
Query: 608 KIEN 611
+I+
Sbjct: 117 RIKG 120
>gnl|CDD|236307 PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase
subunit; Validated.
Length = 451
Score = 29.0 bits (66), Expect = 8.1
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 273 RAVYNQDDLEARSHMHLASAMAGVGFGNAGVHL 305
R V + +LE +A A A FGN GV++
Sbjct: 169 RVVRTEAELE--KAFSMARAEAKAAFGNPGVYM 199
Score = 29.0 bits (66), Expect = 8.1
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 489 RAVYNQDDLEARSHMHLASAMAGVGFGNAGVHL 521
R V + +LE +A A A FGN GV++
Sbjct: 169 RVVRTEAELE--KAFSMARAEAKAAFGNPGVYM 199
>gnl|CDD|222807 PHA00662, PHA00662, hypothetical protein.
Length = 215
Score = 28.7 bits (64), Expect = 8.5
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 10 LSDMSNPTPDKEYAFEMASSTIRI 33
L+ M P+ YA+ + IRI
Sbjct: 60 LAAMGISPPEWRYAYAQPADAIRI 83
>gnl|CDD|237074 PRK12357, PRK12357, glutaminase; Reviewed.
Length = 326
Score = 28.9 bits (65), Expect = 8.8
Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 77 HGVKFELFDKVRVEPTGDSF 96
G+ + L ++V VEPTGD+F
Sbjct: 87 RGISYVL-ERVDVEPTGDAF 105
>gnl|CDD|163677 cd07939, DRE_TIM_NifV, Streptomyces rubellomurinus FrbC and related
proteins, catalytic TIM barrel domain. FrbC (NifV) of
Streptomyces rubellomurinus catalyzes the condensation
of acetyl-CoA and alpha-ketoglutarate to form
homocitrate and CoA, a reaction similar to one catalyzed
by homocitrate synthase. The gene encoding FrbC is one
of several genes required for the biosynthesis of
FR900098, a potent antimalarial antibiotic. This
protein is also required for assembly of the nitrogenase
MoFe complex but its exact role is unknown. This
family also includes the NifV proteins of Heliobacterium
chlorum and Gluconacetobacter diazotrophicus, which
appear to be orthologous to FrbC. This family belongs
to the DRE-TIM metallolyase superfamily. DRE-TIM
metallolyases include 2-isopropylmalate synthase (IPMS),
alpha-isopropylmalate synthase (LeuA),
3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate
synthase, citramalate synthase, 4-hydroxy-2-oxovalerate
aldolase, re-citrate synthase, transcarboxylase 5S,
pyruvate carboxylase, AksA, and FrbC. These members all
share a conserved triose-phosphate isomerase (TIM)
barrel domain consisting of a core beta(8)-alpha(8)
motif with the eight parallel beta strands forming an
enclosed barrel surrounded by eight alpha helices. The
domain has a catalytic center containing a divalent
cation-binding site formed by a cluster of invariant
residues that cap the core of the barrel. In addition,
the catalytic site includes three invariant residues -
an aspartate (D), an arginine (R), and a glutamate (E) -
which is the basis for the domain name "DRE-TIM".
Length = 259
Score = 28.6 bits (65), Expect = 9.4
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 196 TLGLIDPLHTLSLPERVTAYSGFDVFCHA 224
T+G++DP T L R+ A + + HA
Sbjct: 161 TVGILDPFTTYELIRRLRAATDLPLEFHA 189
Score = 28.6 bits (65), Expect = 9.4
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 412 TLGLIDPLHTLSLPERVTAYSGFDVFCHA 440
T+G++DP T L R+ A + + HA
Sbjct: 161 TVGILDPFTTYELIRRLRAATDLPLEFHA 189
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.400
Gapped
Lambda K H
0.267 0.0803 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 34,128,913
Number of extensions: 3391801
Number of successful extensions: 3230
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3028
Number of HSP's successfully gapped: 106
Length of query: 660
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 557
Effective length of database: 6,369,140
Effective search space: 3547610980
Effective search space used: 3547610980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.5 bits)