RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2427
(660 letters)
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer,
structural genomics,struct proteomics in europe, spine;
2.70A {Klebsiella pneumoniae}
Length = 387
Score = 260 bits (668), Expect = 3e-81
Identities = 92/351 (26%), Positives = 154/351 (43%), Gaps = 40/351 (11%)
Query: 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLS--KLAPVKATLDSLTRHGVKFELFDK 86
+ GP VG + ++ ++TD L K V TL L G++ +FD
Sbjct: 12 NVNFFGPNAISVVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDG 71
Query: 87 VRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIG 146
V P + + R QCD + VGGGS D K + + Y G
Sbjct: 72 VEPNPKDTNVRDGLAVFRREQCDIIVTVGGGSPHDCGKGIGIAATHEG-DLYQYA----G 126
Query: 147 KGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTL 206
+T PL P++A+ TT+GT SE T + K K I + P++ + DPL +
Sbjct: 127 IET-LTNPLPPIVAVNTTAGTASEVTRHCVLTNTETKVKFVIVSWRNLPSVSINDPLLMI 185
Query: 207 SLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQT 266
P +TA +G D HA+E++ + NPV+D A A++
Sbjct: 186 GKPAALTAATGMDALTHAVEAYISK-------------------DANPVTDAAAMQAIRL 226
Query: 267 IRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYS 326
I + ++AV +L+AR +M AS +AG+ F NA + H +++ + G +
Sbjct: 227 IARNLRQAVALGSNLQAREYMAYASLLAGMAFNNANLGYVHAMAHQLGG---LYD----- 278
Query: 327 DDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAV 377
+PHG++ + P V + ++PE+ + AEL+G +++ + DA
Sbjct: 279 -----MPHGVANAVLLPHVARYNLIANPEKFADIAELMGENITGLSTLDAA 324
Score = 196 bits (501), Expect = 7e-57
Identities = 71/280 (25%), Positives = 126/280 (45%), Gaps = 33/280 (11%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
AV TT+GT SE T + K K I + P++ + DPL + P +TA +G D
Sbjct: 139 AVNTTAGTASEVTRHCVLTNTETKVKFVIVSWRNLPSVSINDPLLMIGKPAALTAATGMD 198
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
HA+E++ + NPV+D A A++ I + ++AV
Sbjct: 199 ALTHAVEAYISK-------------------DANPVTDAAAMQAIRLIARNLRQAVALGS 239
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
+L+AR +M AS +AG+ F NA + H +++ + G + +PHG++
Sbjct: 240 NLQAREYMAYASLLAGMAFNNANLGYVHAMAHQLGG---LYD----------MPHGVANA 286
Query: 556 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKV 615
+ P V + ++PE+ + AEL+G +++ + DA + + + I L+
Sbjct: 287 VLLPHVARYNLIANPEKFADIAELMGENITGLSTLDAAEKAIAAITRLSMDIGIPQHLRD 346
Query: 616 LGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFEN 655
LG D P + L PR+ +E+++A +F
Sbjct: 347 LGVKETDFPYMAEMALKDGN-AFSNPRKGNEQEIAAIFRQ 385
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A
{Zymomonas mobilis} PDB: 3owo_A*
Length = 383
Score = 259 bits (663), Expect = 2e-80
Identities = 87/350 (24%), Positives = 145/350 (41%), Gaps = 40/350 (11%)
Query: 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR 88
+G G + D+ + +++D ++K VK D L G+ ++D V
Sbjct: 10 FVNEMGEGSLEKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVM 69
Query: 89 VEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKG 148
PT + LE K ++ D I++GGGS D KA L + E DY
Sbjct: 70 PNPTVTAVLEGLKILKDNNSDFVISLGGGSPHDCAKAIALVATNGG-EVKDYEGI----- 123
Query: 149 KPVTVPLKPLIAIPTTSGTGSETTGVSIF-DYEPLKAKTGIANRALKPTLGLIDPLHTLS 207
P PL++I TT+GT SE T I D K I +R + P + + DPL +
Sbjct: 124 DKSKKPALPLMSINTTAGTASEMTRFCIITDEVR-HVKMAIVDRHVTPMVSVNDPLLMVG 182
Query: 208 LPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267
+P+ +TA +G D HA E++++ P++D A A I
Sbjct: 183 MPKGLTAATGMDALTHAFEAYSST-------------------AATPITDACALKAASMI 223
Query: 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSD 327
+ K A N D+ AR M A +AG+ F NA + H +++ + G ++
Sbjct: 224 AKNLKTACDNGKDMPAREAMAYAQFLAGMAFNNASLGYVHAMAHQLGG---YYN------ 274
Query: 328 DHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAV 377
+PHG+ + P V + A+ R + +G D++ + +
Sbjct: 275 ----LPHGVCNAVLLPHVLAYNASVVAGRLKDVGVAMGLDIANLGDKEGA 320
Score = 188 bits (481), Expect = 4e-54
Identities = 67/281 (23%), Positives = 117/281 (41%), Gaps = 35/281 (12%)
Query: 376 AVPTTSGTGSETTGVSIF-DYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGF 434
++ TT+GT SE T I D K I +R + P + + DPL + +P+ +TA +G
Sbjct: 135 SINTTAGTASEMTRFCIITDEVR-HVKMAIVDRHVTPMVSVNDPLLMVGMPKGLTAATGM 193
Query: 435 DVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQ 494
D HA E++++ P++D A A I + K A N
Sbjct: 194 DALTHAFEAYSST-------------------AATPITDACALKAASMIAKNLKTACDNG 234
Query: 495 DDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSV 554
D+ AR M A +AG+ F NA + H +++ + G ++ +PHG+
Sbjct: 235 KDMPAREAMAYAQFLAGMAFNNASLGYVHAMAHQLGG---YYN----------LPHGVCN 281
Query: 555 VMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLK 614
+ P V + A+ R + +G D++ + + + VR + I L
Sbjct: 282 AVLLPHVLAYNASVVAGRLKDVGVAMGLDIANLGDKEGAEATIQAVRDLAASIGIPANLT 341
Query: 615 VLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFEN 655
LG D+P L L + PR+ ++++ LF +
Sbjct: 342 ELGAKKEDVPLLADHAL-KDACALTNPRQGDQKEVEELFLS 381
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural
genomics, JCSG, PSI, protein structure initiative; HET:
MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2
PDB: 1vhd_A*
Length = 371
Score = 256 bits (657), Expect = 9e-80
Identities = 80/355 (22%), Positives = 138/355 (38%), Gaps = 45/355 (12%)
Query: 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR 88
+ + G + + G + + + + V K + L + +E+FD+V
Sbjct: 20 TDVFFGEKILEKRGNIIDLLGKRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVE 79
Query: 89 VEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKG 148
P+ D+ ++A + R+ D + +GGGS +D KA + + + D + K
Sbjct: 80 ENPSFDNVMKAVERYRNDSFDFVVGLGGGSPMDFAKAVAVLLKEKDLSVEDLYDREKVKH 139
Query: 149 KPVTVPLKPLIAIPTTSGTGSETTGVSIF-DYEPLKAKTGIANRALKPTLGLIDPLHTLS 207
P++ IPTT+GTGSE T SI D E + + P +DP +T S
Sbjct: 140 WL------PVVEIPTTAGTGSEVTPYSILTDPEG-NKRGCT---LMFPVYAFLDPRYTYS 189
Query: 208 LPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267
+ + +T +G D HA+E + + P SD A A++ I
Sbjct: 190 MSDELTLSTGVDALSHAVEGYLSR-------------------KSTPPSDALAIEAMKII 230
Query: 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSD 327
+ +A+ + + EAR M +AS +AG+ G L H L YP++
Sbjct: 231 HRNLPKAI--EGNREARKKMFVASCLAGMVIAQTGTTLAHALGYPLTT---EKG------ 279
Query: 328 DHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSG 382
I HG + M P V PE+ + G + + K +
Sbjct: 280 ----IKHGKATGMVLPFVMEVMKEEIPEKVDTVNHIFGGSLLKFLKELGLYEKVA 330
Score = 177 bits (451), Expect = 5e-50
Identities = 61/285 (21%), Positives = 108/285 (37%), Gaps = 59/285 (20%)
Query: 376 AVPTTSGTGSETTGVSIF-DYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGF 434
+PTT+GTGSE T SI D E + + P +DP +T S+ + +T +G
Sbjct: 145 EIPTTAGTGSEVTPYSILTDPEG-NKRGCTL---MFPVYAFLDPRYTYSMSDELTLSTGV 200
Query: 435 DVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQ 494
D HA+E + + P SD A A++ I + +A+ +
Sbjct: 201 DALSHAVEGYLSR-------------------KSTPPSDALAIEAMKIIHRNLPKAI--E 239
Query: 495 DDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSV 554
+ EAR M +AS +AG+ G L H L YP++ I HG +
Sbjct: 240 GNREARKKMFVASCLAGMVIAQTGTTLAHALGYPLTT---EKG----------IKHGKAT 286
Query: 555 VMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLK 614
M P V PE+ + G + ++ ++ + +
Sbjct: 287 GMVLPFVMEVMKEEIPEKVDTVNHIFGGS----------------LLKFLKELGL---YE 327
Query: 615 VLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSMSV 659
+ +S ++ V + + K P + E + N++ ++ V
Sbjct: 328 KVAVSSEELEKWVEKGS-RAKHLKNTPGTFTPEKIRNIYREALGV 371
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI,
protein structure initiative; HET: APR; 1.60A
{Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Length = 386
Score = 252 bits (647), Expect = 5e-78
Identities = 84/350 (24%), Positives = 142/350 (40%), Gaps = 40/350 (11%)
Query: 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR 88
T G G + ++ Q+ ++TD L + V D + G+ + ++D V
Sbjct: 10 ETAWFGRGAVGALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVV 69
Query: 89 VEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEF-LDYVNAPIGK 147
PT E ++ D IA+GGGS DTCKA + +PE G
Sbjct: 70 PNPTITVVKEGLGVFQNSGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLE----GL 125
Query: 148 GKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLS 207
P P P++AIPTT+GT +E T + E + K + P + ID
Sbjct: 126 S-PTNKPSVPILAIPTTAGTAAEVTINYVITDEEKRRKFVCVDPHDIPQVAFIDADMMDG 184
Query: 208 LPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267
+P + A +G D HA+E + G ++D A++ I
Sbjct: 185 MPPALKAATGVDALTHAIEGYITR-------------------GAWALTDALHIKAIEII 225
Query: 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSD 327
+ +V D +A M L +AG+GF N G+ L HG+++P+ ++
Sbjct: 226 AGALRGSV--AGDKDAGEEMALGQYVAGMGFSNVGLGLVHGMAHPLGA---FYN------ 274
Query: 328 DHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAV 377
PHG++ + P V + A + E++ + A ++G V + +A
Sbjct: 275 ----TPHGVANAILLPHVMRYNADFTGEKYRDIARVMGVKVEGMSLEEAR 320
Score = 183 bits (466), Expect = 6e-52
Identities = 67/280 (23%), Positives = 114/280 (40%), Gaps = 35/280 (12%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
A+PTT+GT +E T + E + K + P + ID +P + A +G D
Sbjct: 137 AIPTTAGTAAEVTINYVITDEEKRRKFVCVDPHDIPQVAFIDADMMDGMPPALKAATGVD 196
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
HA+E + G ++D A++ I + +V
Sbjct: 197 ALTHAIEGYITR-------------------GAWALTDALHIKAIEIIAGALRGSV--AG 235
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
D +A M L +AG+GF N G+ L HG+++P+ ++ PHG++
Sbjct: 236 DKDAGEEMALGQYVAGMGFSNVGLGLVHGMAHPLGA---FYN----------TPHGVANA 282
Query: 556 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKV 615
+ P V + A + E++ + A ++G V + +A + V + I L+
Sbjct: 283 ILLPHVMRYNADFTGEKYRDIARVMGVKVEGMSLEEARNAAVEAVFALNRDVGIPPHLRD 342
Query: 616 LGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFEN 655
+G DIPAL L T PRE + ED+ L+
Sbjct: 343 VGVRKEDIPALAQAAL-DDVCTGGNPREATLEDIVELYHT 381
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: NAD EPE; 2.12A {Shewanella
denitrificans}
Length = 375
Score = 224 bits (572), Expect = 2e-67
Identities = 66/363 (18%), Positives = 113/363 (31%), Gaps = 59/363 (16%)
Query: 22 YAFEMASSTIRIGPGVTREVG---MDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHG 78
F+ + G G ++ V + D K +
Sbjct: 23 KNFKCVP-KMIFGRGSFVQLDTVLEQERTDANDFVVFLVDDVHQH----KPLAARVPNKA 77
Query: 79 VKFELFDKVRVEPTGDSFLEATKFVR---SVQCDAFIAVGGGSVIDTCKAANLYYCDPEA 135
++ V EPT E T V+ + + + +GGGS +D KA +L +P
Sbjct: 78 HDLVIYVNVDDEPTTVQVDELTAQVKAFNTKLPVSVVGLGGGSTMDLAKAVSLMLTNPG- 136
Query: 136 EFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIF-DYEPLKAKTGIANRALK 194
+Y G + P I IPT SGTG+E + ++ K G+ +
Sbjct: 137 SSSEYQ----GWDL-IKNPAVHHIGIPTVSGTGAEASRTAVLCGPV---RKLGLNSDYTV 188
Query: 195 PTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNP 254
++D +P Y+G D F H +ES N
Sbjct: 189 FDQIIMDSELIAGVPTDQWFYTGMDCFIHCVESLQGT-------------------YLNE 229
Query: 255 VSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPIS 314
+ +A ++ R VY D E + +AS M G+ + V CH +SY +
Sbjct: 230 FAKAFAEKSMDLCR-----EVYLDDHPEKDDKLMMASYMGGMSIAYSQVGACHAVSYGLG 284
Query: 315 GNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKA 374
HG+ ++ + F + E+ + +
Sbjct: 285 Y---VLG----------YHHGIGNCLAFDVLEEFYPE-GVAEFRKMMEIHNITLPKNICK 330
Query: 375 DAV 377
D
Sbjct: 331 DLP 333
Score = 163 bits (414), Expect = 8e-45
Identities = 41/254 (16%), Positives = 77/254 (30%), Gaps = 43/254 (16%)
Query: 376 AVPTTSGTGSETTGVSIF-DYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGF 434
+PT SGTG+E + ++ K G+ + ++D +P Y+G
Sbjct: 156 GIPTVSGTGAEASRTAVLCGPV---RKLGLNSDYTVFDQIIMDSELIAGVPTDQWFYTGM 212
Query: 435 DVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQ 494
D F H +ES N + +A ++ R VY
Sbjct: 213 DCFIHCVESLQGT-------------------YLNEFAKAFAEKSMDLCR-----EVYLD 248
Query: 495 DDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSV 554
D E + +AS M G+ + V CH +SY + HG+
Sbjct: 249 DHPEKDDKLMMASYMGGMSIAYSQVGACHAVSYGLGY---VLG----------YHHGIGN 295
Query: 555 VMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKI-ENGL 613
++ + F + E+ + + D + M + +
Sbjct: 296 CLAFDVLEEFYPE-GVAEFRKMMEIHNITLPKNICKDLPDETIAKMVAVTKSMGPLWDNV 354
Query: 614 KVLGYTSADIPALV 627
G+ ++
Sbjct: 355 YGKGWEEKVTDEML 368
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative
alcohol dehedrogenase, structural GENO joint center for
structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A
{Ralstonia eutropha}
Length = 358
Score = 210 bits (536), Expect = 3e-62
Identities = 76/366 (20%), Positives = 127/366 (34%), Gaps = 70/366 (19%)
Query: 13 MSNPTPDKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLA-PVKATL 71
M + P + +E ++ + G G + +V ++ + A+R V+ P+ A + L
Sbjct: 2 MKSSQP---FIYEAHAARVVFGAGSSSQVAAEVERLGAKRALVLCTPNQQAEAERIADLL 58
Query: 72 DSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYC 131
+ ++ + +S +AT R D +AVGGGS KA L
Sbjct: 59 G-----PLSAGVYAGAVMHVPIESARDATARAREAGADCAVAVGGGSTTGLGKAIAL--- 110
Query: 132 DPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANR 191
P++AIPTT GSE T V K +
Sbjct: 111 ---------------------ETGMPIVAIPTTYA-GSEVTPVYGLTEA--GTKRTGRDP 146
Query: 192 ALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQG 251
+ P + DP T+ LP ++ S + HA E A +
Sbjct: 147 RVLPRTVIYDPALTVGLPRGLSVTSALNAIAHAAEGLYA-------------------RD 187
Query: 252 QNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSY 311
NPV + A ++ + + DL+ARS + + G G G+ L H L +
Sbjct: 188 ANPVMSLMAEEGIRALAAGIPAVFNDPADLDARSQCLYGAWLCGTVLGGVGMALHHKLCH 247
Query: 312 PISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRV 371
+ G +F+ +PH + + P + AA+ PE GA
Sbjct: 248 TLGG---SFN----------LPHAETHTIVLPHALAYNAAAVPEAMARIRRATGAGEQSA 294
Query: 372 KKADAV 377
A +
Sbjct: 295 --AATL 298
Score = 164 bits (417), Expect = 2e-45
Identities = 57/280 (20%), Positives = 91/280 (32%), Gaps = 47/280 (16%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
A+PTT GSE T V K + + P + DP T+ LP ++ S +
Sbjct: 118 AIPTTYA-GSEVTPVYGLTEA--GTKRTGRDPRVLPRTVIYDPALTVGLPRGLSVTSALN 174
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
HA E A + NPV + A ++ + +
Sbjct: 175 AIAHAAEGLYA-------------------RDANPVMSLMAEEGIRALAAGIPAVFNDPA 215
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
DL+ARS + + G G G+ L H L + + G +F+ +PH +
Sbjct: 216 DLDARSQCLYGAWLCGTVLGGVGMALHHKLCHTLGG---SFN----------LPHAETHT 262
Query: 556 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKV 615
+ P + AA+ PE GA A T+ + L+
Sbjct: 263 IVLPHALAYNAAAVPEAMARIRRATGAGEQSA---------AATLFDLAQRHGAPVALRD 313
Query: 616 LGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFEN 655
+G D+ L PR E + L +
Sbjct: 314 IGMREEDLDRAADIALASPY---WNPRPIEREPIRALLQA 350
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics,
MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens
str}
Length = 353
Score = 208 bits (532), Expect = 9e-62
Identities = 65/350 (18%), Positives = 120/350 (34%), Gaps = 65/350 (18%)
Query: 20 KEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLA-PVKATLDSLTRHG 78
+ + + A + I G + +V ++ + R V++ P A + + L
Sbjct: 4 QPFVYMAAPARIVFSAGSSADVAEEIRRLGLSRALVLSTPQQKGDAEALASRLG-----R 58
Query: 79 VKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFL 138
+ +F + + + A + R+ D +++GGGS KA L
Sbjct: 59 LAAGVFSEAAMHTPVEVTKTAVEAYRAAGADCVVSLGGGSTTGLGKAIAL---------- 108
Query: 139 DYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLG 198
I IPTT GSE T + + E KT + + P +
Sbjct: 109 --------------RTDAAQIVIPTTYA-GSEVTPI-LGQTEN-GVKTTMRGPEILPEVV 151
Query: 199 LIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDV 258
+ D TL LP ++ SG + HA E+ A + +NP++ +
Sbjct: 152 IYDAELTLGLPVAISMTSGLNAMAHAAEALYA-------------------RDRNPIASM 192
Query: 259 WARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVK 318
A L+ + + D+ AR + + G G G+ L H L + + G
Sbjct: 193 MAVEGLRAMIEALPVVRQAPHDIGARETALYGAWLCGTVLGAVGMSLHHKLCHTLGG--- 249
Query: 319 TFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADV 368
+ +PH + + P + ++P A L+G
Sbjct: 250 SLD----------LPHAETHAVLLPHTIAYVEEAAPNLLAPLAALVGGRA 289
Score = 162 bits (412), Expect = 1e-44
Identities = 50/280 (17%), Positives = 95/280 (33%), Gaps = 50/280 (17%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
+PTT GSE T + + E KT + + P + + D TL LP ++ SG +
Sbjct: 116 VIPTTYA-GSEVTPI-LGQTEN-GVKTTMRGPEILPEVVIYDAELTLGLPVAISMTSGLN 172
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
HA E+ A + +NP++ + A L+ + +
Sbjct: 173 AMAHAAEALYA-------------------RDRNPIASMMAVEGLRAMIEALPVVRQAPH 213
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
D+ AR + + G G G+ L H L + + G + +PH +
Sbjct: 214 DIGARETALYGAWLCGTVLGAVGMSLHHKLCHTLGG---SLD----------LPHAETHA 260
Query: 556 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKV 615
+ P + ++P A L+G + + ++ + L
Sbjct: 261 VLLPHTIAYVEEAAPNLLAPLAALVGGRA------------GAGLFDFAARLGAPSSLAA 308
Query: 616 LGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFEN 655
LG + D+ + PR + + +L +
Sbjct: 309 LGVGADDLDPMAELATANPY---WCPRPIEKTAIRDLLQR 345
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol
dehydrogenase, structur genomics, joint center for
structural genomics; HET: MSE; 2.07A {Corynebacterium
glutamicum}
Length = 364
Score = 207 bits (529), Expect = 4e-61
Identities = 70/352 (19%), Positives = 117/352 (33%), Gaps = 66/352 (18%)
Query: 17 TPDKEYAFEMASSTIRIGPG-VTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLT 75
+ + + G G + + ++ + +V V+ +A +
Sbjct: 3 NNSLAFNHDTLPQKVMFGYGKSSAFLKQEVERRGSAKVMVIAGEREMSIA--HKVASEIE 60
Query: 76 RHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEA 135
D+V + + A + D + VGGGS I KA +
Sbjct: 61 VAIW----HDEVVMHVPIEVAERARAVATDNEIDLLVCVGGGSTIGLAKAIAM------- 109
Query: 136 EFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKP 195
P++AIPTT GSE T V KT + + P
Sbjct: 110 -----------------TTALPIVAIPTTYA-GSEATNVWGLTEA--ARKTTGVDLKVLP 149
Query: 196 TLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPV 255
+ D T+SLP ++ SG + H ++S +P+
Sbjct: 150 ETVIYDSELTMSLPVEMSVASGLNGLAHCIDSLWG-------------------PNADPI 190
Query: 256 SDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISG 315
+ V A ++ + Q + V N +E R + +A V F +AG L H + + + G
Sbjct: 191 NAVLAAEGIRALNQGLPKIVANPHSIEGRDEALYGAYLAAVSFASAGSGLHHKICHTLGG 250
Query: 316 NVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGAD 367
TF+ +PH + P V F A +PE AA G D
Sbjct: 251 ---TFN----------LPHAQTHATVLPYVLAFNAGDAPEAERRAAAAFGTD 289
Score = 165 bits (421), Expect = 6e-46
Identities = 63/283 (22%), Positives = 106/283 (37%), Gaps = 48/283 (16%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
A+PTT GSE T V KT + + P + D T+SLP ++ SG +
Sbjct: 117 AIPTTYA-GSEATNVWGLTEA--ARKTTGVDLKVLPETVIYDSELTMSLPVEMSVASGLN 173
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
H ++S +P++ V A ++ + Q + V N
Sbjct: 174 GLAHCIDSLWG-------------------PNADPINAVLAAEGIRALNQGLPKIVANPH 214
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
+E R + +A V F +AG L H + + + G TF+ +PH +
Sbjct: 215 SIEGRDEALYGAYLAAVSFASAGSGLHHKICHTLGG---TFN----------LPHAQTHA 261
Query: 556 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKV 615
P V F A +PE AA G D + ++ + L
Sbjct: 262 TVLPYVLAFNAGDAPEAERRAAAAFGTDT-----------ALEGLQRLRLSVNAPKRLSD 310
Query: 616 LGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSMS 658
G+ ++ I V TL ++ PR + E+L+ L E +++
Sbjct: 311 YGFEASGIAEAVDVTLE--KVPANNPRPVTRENLSRLLEAALN 351
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG,
protein structure initiative, PSI, joint center for S
genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP:
e.22.1.2
Length = 407
Score = 197 bits (503), Expect = 6e-57
Identities = 84/364 (23%), Positives = 148/364 (40%), Gaps = 53/364 (14%)
Query: 24 FEMASST-IRIGPGVTREVGMDMVNMKAQRVCVMTDPH-LSKLAPVKATLDSLTRHGVKF 81
F + T I G G ++G ++ N ++V + + K +DSL +HG+++
Sbjct: 16 FVFHNPTKIVFGRGTIPKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEW 75
Query: 82 ELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCK--AANLYYCDPEAEFLD 139
V+ P EA + + + +A + VGGGSV+D+ K AA Y E + D
Sbjct: 76 VEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGALY---EGDIWD 132
Query: 140 YVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGL 199
+ L P+ + T S TG+E G ++ E K K G++++AL P + +
Sbjct: 133 AF----IGKYQIEKAL-PIFDVLTISATGTEMNGNAVITNEKTKEKYGVSSKALYPKVSI 187
Query: 200 IDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVW 259
IDP +LP+ T Y D H LE + +S+
Sbjct: 188 IDPSVQFTLPKEQTVYGAVDAISHILEYYFD-------------------GSSPEISNEI 228
Query: 260 ARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVH----LCHGLSYPISG 315
A ++TI + +R + DD EAR+++ ++ +A G G CH + + +S
Sbjct: 229 AEGTIRTIMKMTERLIEKPDDYEARANLAWSATIALNGTMAVGRRGGEWACHRIEHSLSA 288
Query: 316 NVKTFHPAGYSDDHPIIPHG--LSVVMSAPAVFNFTAASSPERHIE-AAELLGADVSRVK 372
+ I HG L++V PA + +P + A ++ G + +
Sbjct: 289 ----LYD---------IAHGAGLAIVF--PAWMKYVYRKNPAQFERFAKKIFGFEGEGEE 333
Query: 373 KADA 376
Sbjct: 334 LILK 337
Score = 147 bits (372), Expect = 1e-38
Identities = 61/296 (20%), Positives = 112/296 (37%), Gaps = 51/296 (17%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
V T S TG+E G ++ E K K G++++AL P + +IDP +LP+ T Y D
Sbjct: 148 DVLTISATGTEMNGNAVITNEKTKEKYGVSSKALYPKVSIIDPSVQFTLPKEQTVYGAVD 207
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
H LE + +S+ A ++TI + +R + D
Sbjct: 208 AISHILEYYFD-------------------GSSPEISNEIAEGTIRTIMKMTERLIEKPD 248
Query: 496 DLEARSHMHLASAMAGVGFGNAGVH----LCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 551
D EAR+++ ++ +A G G CH + + +S + I HG
Sbjct: 249 DYEARANLAWSATIALNGTMAVGRRGGEWACHRIEHSLSA----LYD---------IAHG 295
Query: 552 --LSVVMSAPAVFNFTAASSPERHIE-AAELLGADVSRVKKADAGKLLADTVRGYMDQMK 608
L++V PA + +P + A ++ G + + G + + ++ ++
Sbjct: 296 AGLAIVF--PAWMKYVYRKNPAQFERFAKKIFGFEGEGEELILKG---IEAFKNWLKKVG 350
Query: 609 IENGLKVLGYTSADIPALV------TGTLPQHRITKL-APREQSEEDLANLFENSM 657
LK G DI +V + + L ED+ + + +
Sbjct: 351 APVSLKDAGIPEEDIDKIVDNVMLLVEKNLKPKGASLGRIMVLEREDVREILKLAA 406
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ;
2.0A {Escherichia coli} SCOP: e.22.1.2
Length = 408
Score = 196 bits (501), Expect = 1e-56
Identities = 70/349 (20%), Positives = 128/349 (36%), Gaps = 53/349 (15%)
Query: 24 FEMASST-IRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSK----LAPVKATLDSLTRHG 78
F + + T I G G + + RV + K L V L G
Sbjct: 25 FNLHTPTRILFGKGAIAGLREQI--PHDARVLITYGGGSVKKTGVLDQVLDALK-----G 77
Query: 79 VKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKA-ANLYYCDPEAEF 137
+ F + P ++ + A K VR + +AVGGGSV+D K A +
Sbjct: 78 MDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDP 137
Query: 138 LDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTL 197
+ GK + + P+ + T TGSE+ ++ + K + ++P
Sbjct: 138 WHILQ---TGGKEIKSAI-PMGCVLTLPATGSESNAGAVISRKTTGDKQAFHSAHVQPVF 193
Query: 198 GLIDPLHTLSLPERVTAYSGFDVFCHALES-FTALPYTERTPCPTDPLLRPAYQGQNPVS 256
++DP++T +LP R A D F H +E T +
Sbjct: 194 AVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVT-------------------KPVDAKIH 234
Query: 257 DVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHL---CHGLSYPI 313
D +A L T+ + +A+ ++ + R+++ A+ A G AGV H L + +
Sbjct: 235 DRFAEGILLTLIEDGPKALKEPENYDVRANVMWAATQALNGLIGAGVPQDWATHMLGHEL 294
Query: 314 SGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAE 362
+ + H ++ + PA++N + + ++ AE
Sbjct: 295 TA---MHG----------LDHAQTLAIVLPALWNEKRDTKRAKLLQYAE 330
Score = 155 bits (394), Expect = 1e-41
Identities = 49/285 (17%), Positives = 105/285 (36%), Gaps = 37/285 (12%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
V T TGSE+ ++ + K + ++P ++DP++T +LP R A D
Sbjct: 156 CVLTLPATGSESNAGAVISRKTTGDKQAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVD 215
Query: 436 VFCHALES-FTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQ 494
F H +E T + D +A L T+ + +A+
Sbjct: 216 AFVHTVEQYVT-------------------KPVDAKIHDRFAEGILLTLIEDGPKALKEP 256
Query: 495 DDLEARSHMHLASAMAGVGFGNAGVHL---CHGLSYPISGNVKTFHPAGYSDDHPIIPHG 551
++ + R+++ A+ A G AGV H L + ++ + H
Sbjct: 257 ENYDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTA---MHG----------LDHA 303
Query: 552 LSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIEN 611
++ + PA++N + + ++ AE + +++ + R + +Q+ +
Sbjct: 304 QTLAIVLPALWNEKRDTKRAKLLQYAERVW-NITEGSDDERIDAAIAATRNFFEQLGVPT 362
Query: 612 GLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENS 656
L G + IPAL+ + + + ++E +
Sbjct: 363 HLSDYGLDGSSIPALLKKLEEHGMTQLGENHDITLDVSRRIYEAA 407
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism;
HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP:
e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Length = 370
Score = 146 bits (370), Expect = 7e-39
Identities = 63/347 (18%), Positives = 115/347 (33%), Gaps = 52/347 (14%)
Query: 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR 88
+ G V ++ + + + V+ D + K+A ++ L + + E
Sbjct: 11 AKYVQGKNVITKIA-NYLEGIGNKTVVIADEIVWKIA-GHTIVNELKKGNIAAEEV-VFS 67
Query: 89 VEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKG 148
E + + R + I VGGG +DT KA A+ LD
Sbjct: 68 GEASRNEVERIANIARKAEAAIVIGVGGGKTLDTAKAV--------ADELD--------- 110
Query: 149 KPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSL 208
++ +PT + T + T+ +S+ Y P L L+D +
Sbjct: 111 -------AYIVIVPTAASTDAPTSALSVI-YSDDGVFESYRFYKKNPDLVLVDTKIIANA 162
Query: 209 PERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIR 268
P R+ A D +E+ + + +T P + ++ A QT+
Sbjct: 163 PPRLLASGIADALATWVEARSVIKSGGKTMAGGIPTI---------AAEAIAEKCEQTLF 213
Query: 269 QYFKRA---VYNQDDLEARSHMHLA-SAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAG 324
+Y K A V + A + A + ++G+GF + G+ H + + H
Sbjct: 214 KYGKLAYESVKAKVVTPALEAVVEANTLLSGLGFESGGLAAAHAIHNGFTALEGEIHHL- 272
Query: 325 YSDDHPIIPHGLSVVMS--APAVFNFTAASSPERHIEAAELLGADVS 369
HG V + ER+IE L V+
Sbjct: 273 --------THGEKVAFGTLVQLALEEHSQQEIERYIELYLCLDLPVT 311
Score = 92.8 bits (231), Expect = 2e-20
Identities = 50/285 (17%), Positives = 90/285 (31%), Gaps = 50/285 (17%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
VPT + T + T+ +S+ Y P L L+D + P R+ A D
Sbjct: 115 IVPTAASTDAPTSALSVI-YSDDGVFESYRFYKKNPDLVLVDTKIIANAPPRLLASGIAD 173
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRA---VY 492
+E+ + + +T P + ++ A QT+ +Y K A V
Sbjct: 174 ALATWVEARSVIKSGGKTMAGGIPTI---------AAEAIAEKCEQTLFKYGKLAYESVK 224
Query: 493 NQDDLEARSHMHLA-SAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 551
+ A + A + ++G+GF + G+ H + + H HG
Sbjct: 225 AKVVTPALEAVVEANTLLSGLGFESGGLAAAHAIHNGFTALEGEIHHL---------THG 275
Query: 552 LSVVMS--APAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKI 609
V + ER+IE L V+ L D
Sbjct: 276 EKVAFGTLVQLALEEHSQQEIERYIELYLCLDLPVT----------LED----------- 314
Query: 610 ENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFE 654
+K+ + DI + + T + +D+A+
Sbjct: 315 ---IKLKDASREDILKVAKAATAE-GETIHNAFNVTADDVADAIF 355
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO
structural genomics, JCSG, protein structure initiative,
PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP:
e.22.1.2
Length = 376
Score = 143 bits (362), Expect = 1e-37
Identities = 55/314 (17%), Positives = 103/314 (32%), Gaps = 53/314 (16%)
Query: 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR 88
G G + + ++ +R V+ D + K + S T+ V ++F
Sbjct: 21 GRYVQGAGAINILE-EELSRFGERAFVVIDDFVDKNVLGENFFSSFTKVRVNKQIFGGEC 79
Query: 89 VEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKG 148
+ +E + + D + +GGG +DT KA A L
Sbjct: 80 SDEE----IERLSGLVEEETDVVVGIGGGKTLDTAKAV--------AYKLK--------- 118
Query: 149 KPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSL 208
KP++ +PT + T + + +S+ Y P P + L+D
Sbjct: 119 -------KPVVIVPTIASTDAPCSALSVI-YTPNGEFKRYLFLPRNPDVVLVDTEIVAKA 170
Query: 209 PERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIR 268
P R D E+ + C + + + AR +T+
Sbjct: 171 PARFLVAGMGDALATWFEAES---------CKQKYAPNMTGRLGSMTAYALARLCYETLL 221
Query: 269 QY---FKRAVYNQDDLEARSHMHLA-SAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAG 324
+Y KR+V + A + A + ++G+GF + G+ H + ++ T
Sbjct: 222 EYGVLAKRSVEEKSVTPALEKIVEANTLLSGLGFESGGLAAAHAIHNGLTVLENTHK--- 278
Query: 325 YSDDHPIIPHGLSV 338
HG V
Sbjct: 279 -------YLHGEKV 285
Score = 90.5 bits (225), Expect = 1e-19
Identities = 43/286 (15%), Positives = 88/286 (30%), Gaps = 52/286 (18%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
VPT + T + + +S+ Y P P + L+D P R D
Sbjct: 123 IVPTIASTDAPCSALSVI-YTPNGEFKRYLFLPRNPDVVLVDTEIVAKAPARFLVAGMGD 181
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQY---FKRAVY 492
E+ + C + + + AR +T+ +Y KR+V
Sbjct: 182 ALATWFEAES---------CKQKYAPNMTGRLGSMTAYALARLCYETLLEYGVLAKRSVE 232
Query: 493 NQDDLEARSHMHLA-SAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 551
+ A + A + ++G+GF + G+ H + ++ T HG
Sbjct: 233 EKSVTPALEKIVEANTLLSGLGFESGGLAAAHAIHNGLTVLENTHK----------YLHG 282
Query: 552 LSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIEN 611
V + A + P + IE V + +++ +
Sbjct: 283 EKVAIGVLA--SLFLTDKPRKMIEE-----------------------VYSFCEEVGLPT 317
Query: 612 GLKVLGYTS---ADIPALVTGTLPQHRITKLAPREQSEEDLANLFE 654
L +G D+ + ++ P+ + +D+ +
Sbjct: 318 TLAEIGLDGVSDEDLMKVAEKACDKNETIHNEPQPVTSKDVFFALK 363
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.34A {Sinorhizobium meliloti}
Length = 387
Score = 129 bits (326), Expect = 8e-33
Identities = 45/314 (14%), Positives = 82/314 (26%), Gaps = 50/314 (15%)
Query: 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR 88
+ G ++ + +R V+ D L + ++FE F
Sbjct: 32 NKYIQRAGEIDKLA-AYLAPLGKRALVLIDRVLFDALSERIGKSCGDSLDIRFERFGG-- 88
Query: 89 VEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKG 148
E K D + VGGG DT K A
Sbjct: 89 -ECCTSEIERVRKVAIEHGSDILVGVGGGKTADTAKIV--------AIDTG--------- 130
Query: 149 KPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSL 208
++ PT + T + + +++ Y P ++D +
Sbjct: 131 -------ARIVIAPTIASTDAPCSAIAVR-YTEHGVYEEALRLPRNPDAVVVDSALVAAA 182
Query: 209 PERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIR 268
P R D E+ + + A AR +
Sbjct: 183 PARFLVAGIGDALSTWFEARSNIESRTDNYVAGGFPATEAGMAI-------ARHCQDVLT 235
Query: 269 QYFKRA---VYNQDDLEARSH-MHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAG 324
+ +A V A + + + ++G+GF N G HG+ ++ +
Sbjct: 236 RDAVKAKIAVEAGLLTPAVENIIEANTLLSGLGFENCGCSAAHGIHDGLTVLEEVHG--- 292
Query: 325 YSDDHPIIPHGLSV 338
HG V
Sbjct: 293 -------YFHGEKV 299
Score = 84.5 bits (209), Expect = 1e-17
Identities = 37/282 (13%), Positives = 71/282 (25%), Gaps = 48/282 (17%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
PT + T + + +++ Y P ++D + P R D
Sbjct: 135 IAPTIASTDAPCSAIAVR-YTEHGVYEEALRLPRNPDAVVVDSALVAAAPARFLVAGIGD 193
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRA---VY 492
E+ + + A AR + + +A V
Sbjct: 194 ALSTWFEARSNIESRTDNYVAGGFPATEAGMAI-------ARHCQDVLTRDAVKAKIAVE 246
Query: 493 NQDDLEARSH-MHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 551
A + + + ++G+GF N G HG+ ++ + HG
Sbjct: 247 AGLLTPAVENIIEANTLLSGLGFENCGCSAAHGIHDGLTVLEEVHG----------YFHG 296
Query: 552 LSVVMS--APAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKI 609
V + + E I +G LAD
Sbjct: 297 EKVAFGTLCLLMLENRDRAEIEAMIRFCRSVGLPTK----------LAD----------- 335
Query: 610 ENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLAN 651
L ++ A I + I P + + +
Sbjct: 336 ---LGIVDDVPAKIGRVAEAACRPGNIIYATPVTITVPAVRD 374
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces
pombe}
Length = 450
Score = 122 bits (307), Expect = 7e-30
Identities = 54/311 (17%), Positives = 97/311 (31%), Gaps = 44/311 (14%)
Query: 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR 88
G M + + V+ D ++ + +DSL+++G+
Sbjct: 70 QKYVQGRHAFTRSYMYVKKWATKSAVVLADQNVWNIC-ANKIVDSLSQNGMTVTKL-VFG 127
Query: 89 VEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKG 148
E + + K I VGGG +D+ K A ++
Sbjct: 128 GEASLVELDKLRKQCPD-DTQVIIGVGGGKTMDSAKYI--------AHSMN--------- 169
Query: 149 KPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSL 208
P I PTT+ + + T+ +S+ Y P + L P L ID +
Sbjct: 170 -------LPSIICPTTASSDAATSSLSVI-YTPDGQFQKYSFYPLNPNLIFIDTDVIVRA 221
Query: 209 PERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIR 268
P R D +E+ + + + + D ++AL I
Sbjct: 222 PVRFLISGIGDALSTWVETESVIRSNSTSFAGGVASIA-GRYIARACKDTLEKYALSAI- 279
Query: 269 QYFKRAVYNQDDLEARSHMHLAS-AMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSD 327
+ EA ++ A+ M+G+GF N G+ H + ++ H
Sbjct: 280 ----LSNTRGVCTEAFENVVEANTLMSGLGFENGGLAAAHAIHNGMTAIHGPVHRL---- 331
Query: 328 DHPIIPHGLSV 338
HG V
Sbjct: 332 -----MHGEKV 337
Score = 76.0 bits (187), Expect = 9e-15
Identities = 43/283 (15%), Positives = 83/283 (29%), Gaps = 45/283 (15%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
PTT+ + + T+ +S+ Y P + L P L ID + P R D
Sbjct: 174 ICPTTASSDAATSSLSVI-YTPDGQFQKYSFYPLNPNLIFIDTDVIVRAPVRFLISGIGD 232
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
+E+ + + + + D ++AL I +
Sbjct: 233 ALSTWVETESVIRSNSTSFAGGVASIA-GRYIARACKDTLEKYALSAIL-----SNTRGV 286
Query: 496 DLEARSHMHLAS-AMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSV 554
EA ++ A+ M+G+GF N G+ H + ++ H HG V
Sbjct: 287 CTEAFENVVEANTLMSGLGFENGGLAAAHAIHNGMTAIHGPVHRL---------MHGEKV 337
Query: 555 VMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLK 614
L + + +M + + L+
Sbjct: 338 AYGTLV---------------QVVLEDWPLEDFNN----------LASFMAKCHLPITLE 372
Query: 615 VLGYTSADIPALVT---GTLPQHRITKLAPREQSEEDLANLFE 654
LG + L+ TL ++ + +A+ +
Sbjct: 373 ELGIPNVTDEELLMVGRATLRPDESIHNMSKKFNPSQIADAIK 415
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha
structural genomics, joint center for structural
genomics; HET: MSE; 2.37A {Clostridium acetobutylicum
atcc 824}
Length = 354
Score = 82.2 bits (203), Expect = 5e-17
Identities = 42/288 (14%), Positives = 88/288 (30%), Gaps = 53/288 (18%)
Query: 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR 88
+ +G +G + +RV + + +L + S+ ++ E + V+
Sbjct: 13 LILEVGNNKIYNIGQIIKKGNFKRVSLYFGEGIYELF-GETIEKSIKSSNIEIEAVETVK 71
Query: 89 VEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKG 148
D + F + DA I +GGG ID K A
Sbjct: 72 -NIDFDE-IGTNAFKIPAEVDALIGIGGGKAIDAVKYM--------AFLRK--------- 112
Query: 149 KPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSL 208
P I++PT++ ++ V+ +T + + P ++D
Sbjct: 113 -------LPFISVPTSTSNDGFSSPVASLLIN--GKRTSVPAKT--PDGIVVDIDVIKGS 161
Query: 209 PERVTAYSGF-DVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267
PE+ SG D+ + + ++ + D + +++
Sbjct: 162 PEKFIY-SGIGDLVSNITALYDW--------------KFEEENHKSIIDDFAVMISKKSV 206
Query: 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISG 315
+ + + D + + M G+ G S P SG
Sbjct: 207 NSFVRTDFKSIKDEVFLKELVDSLTMNGIAME------IAGNSSPASG 248
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.4 bits (138), Expect = 1e-08
Identities = 83/500 (16%), Positives = 139/500 (27%), Gaps = 194/500 (38%)
Query: 149 KPVTV---PLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHT 205
+P+T+ L+ ++ +PT S F L+ + +PT G
Sbjct: 7 RPLTLSHGSLEHVLLVPTASF----------FIASQLQEQ--FNKILPEPTEGFAADDEP 54
Query: 206 LSLPERVTAYSGF--------------------------------DVFCHALES------ 227
+ E V + G+ D+ HAL +
Sbjct: 55 TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI--HALAAKLLQEN 112
Query: 228 --------------FTALPYTER--TPCPTDPLLRPAYQGQNPVSDVWARFALQ-TIRQY 270
TA +R L R +G + + A F Q Y
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN---AQLVAIFGGQGNTDDY 169
Query: 271 FK--RAVYNQ-----DDLEARSHMHLASAMAGVGFGNAGVHLCHGL-------------- 309
F+ R +Y DL S L+ + +A GL
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAETLSELIRTT--LDAEKVFTQGLNILEWLENPSNTPD 227
Query: 310 -----SYPISGN----------VKTFHPAGYS-DDHPIIPHGLSV----VMSAPAVFNFT 349
S PIS V T G++ + G + +++A A+
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI---A 284
Query: 350 AASSPERHIEAA----ELL---GADVSRVKKADAVPTTS------------GTGSET--- 387
S E + +L G R +A P TS G +
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGV---RCY--EAYPNTSLPPSILEDSLENNEGVPSPML 339
Query: 388 --TGVSIFDYEPLKAKTGIANRALKPT----LGLID----------P--LHTLSLP-ERV 428
+ ++ + KT N L + L++ P L+ L+L +
Sbjct: 340 SISNLTQEQVQDYVNKT---NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA 396
Query: 429 TAYSGFDVFCHALESFTALPYTERTP----------CP--TDPLLRPAYQGQNPVSDVWA 476
A SG D + +P++ER P + LL PA D+
Sbjct: 397 KAPSGLDQ--------SRIPFSERKLKFSNRFLPVASPFHS-HLLVPASDLI--NKDLVK 445
Query: 477 RFALQTIRQYFKRAVYNQDD 496
+ + + VY+ D
Sbjct: 446 N-NVSFNAKDIQIPVYDTFD 464
Score = 50.4 bits (120), Expect = 2e-06
Identities = 75/445 (16%), Positives = 127/445 (28%), Gaps = 170/445 (38%)
Query: 5 RPLRLLSDMSNP--TPDKEYAFEMASSTIRIGP--GVTREVGMDMVNMKAQRVCVMTDPH 60
+ L +L + NP TPDK+Y + S I P GV Q +
Sbjct: 211 QGLNILEWLENPSNTPDKDY---LLSIPISC-PLIGVI------------QLAHYVVTAK 254
Query: 61 LSKLAP--VKATLDSLTRH--GVKFELFDKVRVEPTGDSFLEATK------F---VRSVQ 107
L P +++ L T H G+ + + + +SF + + F VR +
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVA--IAETDSWESFFVSVRKAITVLFFIGVRCYE 312
Query: 108 CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGT 167
++ P + D + +G P P+++I
Sbjct: 313 AYPNTSL------------------PPSILEDSLEN--NEGVP-----SPMLSI------ 341
Query: 168 GSETTGVSIFDYEPLKAKTGIANRALKPT----LGLID----------P--LHTLSLP-E 210
+ ++ + KT N L + L++ P L+ L+L
Sbjct: 342 ----SNLTQEQVQDYVNKT---NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR 394
Query: 211 RVTAYSGFDVFCHALESFTALPYTERTP----------CP--TDPLLRPAYQGQNPVSDV 258
+ A SG D + +P++ER P + LL PA D+
Sbjct: 395 KAKAPSGLDQ--------SRIPFSERKLKFSNRFLPVASPFHS-HLLVPASDLI--NKDL 443
Query: 259 WARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVK 318
+ + + VY+ D G L +SG++
Sbjct: 444 VKN-NVSFNAKDIQIPVYDTFD---------------------GSDLRV-----LSGSI- 475
Query: 319 TFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAA-SSPERHI-----EAAELLGADVSRVK 372
I+ ++ P + HI A LG R K
Sbjct: 476 ---------SERIVD----CIIRLPV--KWETTTQFKATHILDFGPGGASGLGVLTHRNK 520
Query: 373 KADAVPTTSGTGSETTGVSIFDYEP 397
GTG D P
Sbjct: 521 D--------GTGVRVIVAGTLDINP 537
Score = 47.7 bits (113), Expect = 1e-05
Identities = 62/342 (18%), Positives = 100/342 (29%), Gaps = 121/342 (35%)
Query: 331 IIPHG-LSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTG 389
+ HG L V+ P A++L + + +P E T
Sbjct: 10 TLSHGSLEHVLLVPT----------ASFFIASQL------QEQFNKILP-------EPTE 46
Query: 390 VSIFDYEP-----LKAK-TG-IANRALKPTLGLIDPLHTLSLPERVTAY-SGFDVFCHAL 441
D EP L K G +++ +G D + L L E Y G D+ HAL
Sbjct: 47 GFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI--HAL 104
Query: 442 ES--------------------FTALPYTER--TPCPTDPLLRPAYQGQNPVSDVWARFA 479
+ TA +R L R +G + + A F
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN---AQLVAIFG 161
Query: 480 LQ-TIRQYFK--RAVYNQ-----DDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISG 531
Q YF+ R +Y DL S L+ + +A GL
Sbjct: 162 GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTL--DAEKVFTQGL------ 213
Query: 532 NVKTF--HPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKK 589
N+ + +P + P ++S P S P L+G
Sbjct: 214 NILEWLENP----SNTP----DKDYLLSIPI-------SCP--------LIG-------- 242
Query: 590 ADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTL 631
+ Y+ K+LG+T ++ + + G
Sbjct: 243 ------VIQLAH-YV------VTAKLLGFTPGELRSYLKGAT 271
Score = 36.2 bits (83), Expect = 0.045
Identities = 42/293 (14%), Positives = 64/293 (21%), Gaps = 124/293 (42%)
Query: 40 EVGMDMVNMKAQRVCVMTDPHLSKLAPV-KATLDSLTRHGVK---FELFDKVRVEPTGDS 95
E GM M L K + + + H F + D V P +
Sbjct: 1628 EQGMGM--------------DLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLT 1673
Query: 96 FLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPL 155
F G + Y + + GK T +
Sbjct: 1674 IH-------------FGGEKG------KRIRENY------SAMIFETIV--DGKLKTEKI 1706
Query: 156 KPLIAIPTTSGT--GSE--------------TTGVSIFDYEPLKAKTGIANRALKPTLGL 199
I +TS T + + F E LK+K GL
Sbjct: 1707 FKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAF--EDLKSK------------GL 1752
Query: 200 IDPL-----HTLSLPERVTAYSGFDVFCHALESFT-ALPYTERTPCPTDPLLRPAYQGQN 253
I H SL E Y+ AL S +
Sbjct: 1753 IPADATFAGH--SLGE----YA-------ALASLADVMS--------------------- 1778
Query: 254 PVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLC 306
+ ++ + F R + Q + M + G
Sbjct: 1779 -IES-----LVEVV---FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
Score = 33.1 bits (75), Expect = 0.42
Identities = 48/367 (13%), Positives = 93/367 (25%), Gaps = 152/367 (41%)
Query: 287 MHL--ASAMAGVGFGNAGVHLCHGLSYPISGNVK------TFHPAGYSDDHPIIPHGLSV 338
M L S A + A H + I V T H G G +
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGG--------EKGKRI 1684
Query: 339 VMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGT--GSE---------- 386
+ A + + ++ ++ K+ + +TS T +
Sbjct: 1685 RENYSA---MIFETIVDGKLKTEKIF-------KEINE-HSTSYTFRSEKGLLSATQFTQ 1733
Query: 387 ----TTGVSIFDYEPLKAKTGIANRALKPTLGLIDPL-----HTLSLPERVTAYSGFDVF 437
+ F E LK+K GLI H SL E Y+
Sbjct: 1734 PALTLMEKAAF--EDLKSK------------GLIPADATFAGH--SLGE----YA----- 1768
Query: 438 CHALESFT-ALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDD 496
AL S + + ++ + F R + Q
Sbjct: 1769 --ALASLADVMS----------------------IES-----LVEVV---FYRGMTMQVA 1796
Query: 497 LEARSHMHLASAMAGVGFGNAGVHLCH-GLSYPI------SGNVKTFHPAGYSDDHPIIP 549
+ M + G L Y + +G +
Sbjct: 1797 VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL---------------- 1840
Query: 550 HGLSVVMSAPAVFNF------TAASSPERHIEAAELLG--ADVSRVKKADAGKLLADTVR 601
+ +V N+ A+ + A + + + +++K D +L
Sbjct: 1841 --VEIV-------NYNVENQQYVAAG---DLRALDTVTNVLNFIKLQKIDIIEL---QKS 1885
Query: 602 GYMDQMK 608
+++++
Sbjct: 1886 LSLEEVE 1892
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.0 bits (108), Expect = 4e-05
Identities = 67/503 (13%), Positives = 142/503 (28%), Gaps = 151/503 (30%)
Query: 31 IRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVE 90
+ + + E ++M+ Q++ DP+ + + + + L H ++ EL ++ +
Sbjct: 187 LNLKNCNSPETVLEML----QKLLYQIDPNWTSRSDHSSNI-KLRIHSIQAELRRLLKSK 241
Query: 91 PTGDSFL-----EATKFVRS--VQCDAFIAVGGGSVIDTCKAANLYYC----------DP 133
P + L + K + + C + V D AA +
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 134 EAE--FLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETT-GVSIFDY--EPLKAKTGI 188
E + L Y++ + P + S G++ +D K
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPR-RL---SIIAESIRDGLATWDNWKHVNCDKL-- 355
Query: 189 ANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPA 248
++ +L +++P E + VF P PT L
Sbjct: 356 -TTIIESSLNVLEP------AEYRKMFDRLSVF----------P--PSAHIPTILLSL-- 394
Query: 249 YQGQNPVSDVWARFALQTIR----QYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVH 304
+W + + K ++ + E+ + ++
Sbjct: 395 ---------IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-------------SIY 432
Query: 305 LCHGLSYPISGNVKTFH---------PAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPE 355
L L + N H P + D I P+ ++
Sbjct: 433 L--ELKVKLE-NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF------YSHIG----- 478
Query: 356 RHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIF-DYEPLKAKTGIANRALKPTLG 414
H++ E ++ +F D+ L+ K + A +
Sbjct: 479 HHLKNIE-------HPERMTLFRM------------VFLDFRFLEQKIRHDSTAWNASGS 519
Query: 415 LIDPLHTLSLPERVTAYSGF--------DVFCHALESFTALPYTE----RTPCPTDPLLR 462
+++ L L Y + + +A+ F LP E + TD LLR
Sbjct: 520 ILNTLQQLKF------YKPYICDNDPKYERLVNAILDF--LPKIEENLICSKY-TD-LLR 569
Query: 463 PAYQGQNPVSDVWARFALQTIRQ 485
A ++ + +Q
Sbjct: 570 IAL--MAEDEAIFE----EAHKQ 586
Score = 34.1 bits (77), Expect = 0.21
Identities = 47/315 (14%), Positives = 92/315 (29%), Gaps = 97/315 (30%)
Query: 3 EAR---PLRL------LSDMSNPTPD--KEYAFEMASSTIRIG-----PGVTREVGMDM- 45
E P RL + D T D K + ++ I P R++ +
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLA-TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 46 -----VNMKAQRVCVM------TDP-----HLSKLAPVKATLDSLTR--HGVKFELFDKV 87
++ + ++ +D L K + V+ T + EL K+
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 88 RVEPTG-DSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIG 146
E S ++ ++ D I +D Y+ + + I
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIP----PYLDQ------YFY----SHIGHHLKNIE 485
Query: 147 KGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTL 206
+ +T L ++ D+ L+ K + A + +++ L L
Sbjct: 486 HPERMT--LFRMV----------------FLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 207 SLPERVTAYSGF--------DVFCHALESFTALPYTE----RTPCPTDPLLRPAYQGQNP 254
Y + + +A+ F LP E + TD LLR A
Sbjct: 528 KF------YKPYICDNDPKYERLVNAILDF--LPKIEENLICSKY-TD-LLRIAL--MAE 575
Query: 255 VSDVWARFALQTIRQ 269
++ + +Q
Sbjct: 576 DEAIFE----EAHKQ 586
Score = 32.9 bits (74), Expect = 0.40
Identities = 40/317 (12%), Positives = 80/317 (25%), Gaps = 104/317 (32%)
Query: 420 HTLSLPERVT-AYSGFDVFCH------------ALE---SFTALPYTERTPCPTDPLLRP 463
H + + V+ F L F P P+
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 464 AYQGQNPVSDVWARFALQTIRQYF----------KRAVYNQDDLEARSHMHLA-SAMAGV 512
Q +D Q +Y ++A+ E R ++ + G
Sbjct: 113 IEQRDRLYNDN------QVFAKYNVSRLQPYLKLRQALL-----ELRPAKNVLIDGVLGS 161
Query: 513 G--------FGNAGVHLCHGLSYPI----SGNVKTFHPAGYSDDHPIIPHGLSVVMSAPA 560
G + V + + I N + + + L +
Sbjct: 162 GKTWVALDVCLSYKVQCK--MDFKIFWLNLKNCNS------PETVLEMLQKLLYQIDPNW 213
Query: 561 VFNFTAASSPERHIEAAE-----LLGA-----------DV--SRVKKA-DAG-KLLADT- 599
+S+ + I + + LL + +V ++ A + K+L T
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 600 -----------VRGYMDQMKIENGL----------KVLGYTSADIPALVTGTLPQHRITK 638
++ L K L D+P V T P+ ++
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR-LSI 332
Query: 639 LAPREQSEEDLANLFEN 655
+A + D ++N
Sbjct: 333 IAESIR---DGLATWDN 346
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte
tuberculosis, nicotinamide adenine dinucleotide
(NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis}
PDB: 3qbd_A
Length = 368
Score = 38.0 bits (89), Expect = 0.008
Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 31 IRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVE 90
+ IG G+ E+ + +V V+ P L++ A + L GV
Sbjct: 26 VVIGTGLLDELEDLLA--DRHKVAVVHQPGLAETA--EEIRKRLAGKGVDAHRI----EI 77
Query: 91 PTGDSFLEATKFVRSVQC-------------DAFIAVGGGSVID 121
P EA K + V DA +++GGG+ D
Sbjct: 78 PDA----EAGKDLPVVGFIWEVLGRIGIGRKDALVSLGGGAATD 117
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.037
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 7/27 (25%)
Query: 608 KIENGLKVLGYT--SADIPAL-VTGTL 631
K++ LK+ Y SA PAL + T+
Sbjct: 24 KLQASLKL--YADDSA--PALAIKATM 46
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside,
2-deoxystreptamine, dehydroquinate synthase, lyase; HET:
NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Length = 368
Score = 35.4 bits (82), Expect = 0.048
Identities = 16/104 (15%), Positives = 29/104 (27%), Gaps = 23/104 (22%)
Query: 31 IRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVE 90
G V V + + + +++D + V + + L
Sbjct: 15 FAFGEHVLESVESYIPRDEFDQYIMISDSGVPDSI-VHYAAEYFGKLAPVHIL-----RF 68
Query: 91 PTGDSFLEATKFVRSVQC-------------DAFIAVGGGSVID 121
G E K + +V A +AVGGG +
Sbjct: 69 QGG----EEYKTLSTVTNLQERAIALGANRRTAIVAVGGGLTGN 108
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A
{Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A
1vsx_A 3jv8_A
Length = 154
Score = 34.1 bits (79), Expect = 0.052
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Query: 67 VKATLDSLTRHGVKFELFDKVRVEPTGDSF---LEATKFVRSVQCDAFIAVGGGSVI 120
+ D+L RHGV D V P G +F A K + + DA I + G+VI
Sbjct: 31 LSGAEDALLRHGVDTNDIDVAWV-P-G-AFEIPFAAKKMAETKKYDAIITL--GTVI 82
>3okf_A 3-dehydroquinate synthase; structural genomics, center for
structural genomics of infec diseases, csgid, NAD,
lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Length = 390
Score = 34.6 bits (80), Expect = 0.10
Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 23/104 (22%)
Query: 31 IRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVE 90
I IG G+ + ++ Q+V ++T+ ++ L A + L G + L
Sbjct: 44 ISIGAGLFANPALLSLS-AKQKVVIVTNHTVAPLY-APAIISLLDHIGCQHALL----EL 97
Query: 91 PTGDSFLEATKFVRSVQC-------------DAFIAVGGGSVID 121
P G E K + + IA+GGG + D
Sbjct: 98 PDG----EQYKTLETFNTVMSFLLEHNYSRDVVVIALGGGVIGD 137
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin
biosynthesis, transferase; 1.60A {Aquifex aeolicus}
SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Length = 154
Score = 33.3 bits (77), Expect = 0.11
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 67 VKATLDSLTRHGVKFELFDKVRVEPTGDSF---LEATKFVRSVQCDAFIAVGGGSVI 120
V+ +D + RHG + E VRV P G S+ + A + R DA IA+ G +I
Sbjct: 31 VEGAIDCIVRHGGREEDITLVRV-P-G-SWEIPVAAGELARKEDIDAVIAI--GVLI 82
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP:
c.16.1.1 PDB: 1t13_A* 1xn1_A
Length = 158
Score = 32.5 bits (75), Expect = 0.17
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 8/58 (13%)
Query: 67 VKATLDSLTRHGVKFELFDKVRVEPTGDSF---LEATKFVRSVQCDAFIAVGGGSVID 121
K+ + L + V P G ++ L A R+ + A + VID
Sbjct: 29 RKSFVAELAAKTGGSVEVEIFDV-P-G-AYEIPLHAKTLARTGRYAAIVGA--AFVID 81
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin
biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces
cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Length = 168
Score = 32.2 bits (74), Expect = 0.26
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 7/59 (11%)
Query: 67 VKATLDSLTRHGVKFELFDKVRV----E-PTGDSFLEATKFVRSVQCDAFIAVGGGSVI 120
VK ++ + GV+ V E P G + D I + G +I
Sbjct: 35 VKGAIERMASLGVEENNIIIETVPGSYELPWGTKRFVDRQAKLGKPLDVVIPI--GVLI 91
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics
initiative, RSGI, structural genomics,; 1.80A {Thermus
thermophilus} SCOP: e.22.1.1
Length = 348
Score = 32.2 bits (74), Expect = 0.49
Identities = 20/104 (19%), Positives = 31/104 (29%), Gaps = 32/104 (30%)
Query: 31 IRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVE 90
I +G GV +EV A ++ D V+ + + L
Sbjct: 14 ILVGEGVLKEVPP-----LAGPAALLFDRR------VEGFAQEVAKALGVRHLL----GL 58
Query: 91 PTGDSFLEATKFVRSVQC-------------DAFIAVGGGSVID 121
P G EA K + + VGGG++ D
Sbjct: 59 PGG----EAAKSLEVYGKVLSWLAEKGLPRNATLLVVGGGTLTD 98
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1,
riboflavin S; alpha-beta, transferase; HET: INI; 2.53A
{Mesorhizobium loti}
Length = 157
Score = 31.4 bits (72), Expect = 0.50
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 8/58 (13%)
Query: 67 VKATLDSLTRHGVKFELFDKVRVEPTGDSF---LEATKFVRSVQCDAFIAVGGGSVID 121
V A + G D V P G ++ L A + + A + V++
Sbjct: 30 VSAFEAEMADIGGDRFAVDVFDV-P-G-AYEIPLHARTLAETGRYGAVLGT--AFVVN 82
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino
acid biosynthesis, DHQS, O form J, domain movement,
cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans}
SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A*
1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Length = 393
Score = 31.9 bits (73), Expect = 0.60
Identities = 16/111 (14%), Positives = 40/111 (36%), Gaps = 24/111 (21%)
Query: 30 TIRIGPGV-TREVGMDMV-NMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKV 87
+I G+ V D++ + + ++TD ++ + + ++ + + ++
Sbjct: 14 SIIADFGLWRNYVAKDLISDCSSTTYVLVTDTNIGSIY-TPSFEEAFRKRAAEITPSPRL 72
Query: 88 RVE--PTGDSFLEATKFVRSVQC---------------DAFIAVGGGSVID 121
+ P G E +K ++ IA+GGG + D
Sbjct: 73 LIYNRPPG----EVSKSRQTKADIEDWMLSQNPPCGRDTVVIALGGGVIGD 119
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic
amino acid biosynthesis, open form, form B, domain
movement, cyclase; HET: NAD; 2.20A {Staphylococcus
aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Length = 354
Score = 31.8 bits (73), Expect = 0.72
Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 24/103 (23%)
Query: 31 IRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVK---------- 80
I + G + +G + + ++ D ++++ D L+ V
Sbjct: 14 IYVEHGAIKYIGTYLNQFD--QSFLLIDEYVNQYF-ANKFDDILSYENVHKVIIPAGEKT 70
Query: 81 --FELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVID 121
FE + + + L R+ A IAVGGG+ D
Sbjct: 71 KTFEQYQETL-----EYILSH-HVTRN---TAIIAVGGGATGD 104
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase;
HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Length = 156
Score = 30.2 bits (69), Expect = 0.96
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
Query: 67 VKATLDSLTRHGVKFELFDKVRVEPTGDSF---LEATKFVRSVQCDAFIAVGGGSVI 120
++ LD+ ++ V E D V V P G ++ + A +S + A + + G+V+
Sbjct: 32 MEGALDTFKKYSVN-EDIDVVWV-P-G-AYELGVTAQALGKSGKYHAIVCL--GAVV 82
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, cell adhesion; NMR
{Mus musculus} SCOP: d.43.2.1
Length = 143
Score = 29.4 bits (66), Expect = 1.6
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 554 VVMSAPAVFNFTAASSPERHIEAAE-LLGADVSRVKKADAGKLLADTVRGYMDQMKIE 610
V ++ V + E A E LG +V +K + L +R + + +E
Sbjct: 30 VALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNV-VLQTLEGHLRSILGTLTVE 86
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1,
transferase; 2.22A {Brucella abortus} PDB: 2f59_A
2o6h_A*
Length = 157
Score = 29.1 bits (66), Expect = 2.6
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 8/54 (14%)
Query: 67 VKATLDSLTRHGVKFELFDKVRV----E-PTGDSFLEATKFVRSVQCDAFIAVG 115
+ +L G +++ V V E P SF + D F+A+G
Sbjct: 31 LDGAKAALDEAGATYDV---VTVPGALEIPATISFALDGADNGGTEYDGFVALG 81
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase,
peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Length = 688
Score = 29.3 bits (66), Expect = 5.1
Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 5/103 (4%)
Query: 49 KAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQC 108
RV V++ L KA + L + G+K + + + D A +
Sbjct: 536 ATLRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAE-YLASGVDQTYSAA---DATAF 591
Query: 109 DAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPV 151
DA + V G+ + P + GKPV
Sbjct: 592 DA-VVVAEGAERVFSGKGAMSPLFPAGRPSQILTDGYRWGKPV 633
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 28.7 bits (64), Expect = 5.1
Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 9/90 (10%)
Query: 343 PAVFNFTAASSPERHIEAAELLGADVSRVKKA------DAVPTTSGTGSETTGV--SIFD 394
P VF T G D + +K D V + G SE V F+
Sbjct: 61 PGVF-VTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFN 119
Query: 395 YEPLKAKTGIANRALKPTLGLIDPLHTLSL 424
+ +A+ +ID + +++L
Sbjct: 120 VDNFLRYIYRVVKAINAKRLVIDSIPSIAL 149
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.400
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,373,500
Number of extensions: 664850
Number of successful extensions: 1436
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1308
Number of HSP's successfully gapped: 58
Length of query: 660
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 560
Effective length of database: 3,909,693
Effective search space: 2189428080
Effective search space used: 2189428080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.1 bits)