RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2427
(660 letters)
>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli
[TaxId: 562]}
Length = 385
Score = 132 bits (331), Expect = 4e-34
Identities = 85/365 (23%), Positives = 145/365 (39%), Gaps = 46/365 (12%)
Query: 13 MSNPTPDKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLD 72
M+N + + T G G + ++ Q+ ++TD L + V D
Sbjct: 1 MAN--------RMILNETAWFGRGAVGALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTD 52
Query: 73 SLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCD 132
+ G+ + ++D V PT E ++ D IA+GGGS DTCKA + +
Sbjct: 53 KMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGGGSPQDTCKAIGIISNN 112
Query: 133 PEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRA 192
PE + + K P P++AIPTT+GT +E T + E + K +
Sbjct: 113 PEFADVRSLEGLSPTNK----PSVPILAIPTTAGTAAEVTINYVITDEEKRRKFVCVDPH 168
Query: 193 LKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQ 252
P + ID +P + A +G D HA+E +G
Sbjct: 169 DIPQVAFIDADMMDGMPPALKAATGVDALTHAIE-------------------GYITRGA 209
Query: 253 NPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYP 312
++D A++ I + +V D A M L +AG+GF N G+ L HG+++P
Sbjct: 210 WALTDALHIKAIEIIAGALRGSVAGDKD--AGEEMALGQYVAGMGFSNVGLGLVHGMAHP 267
Query: 313 ISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVK 372
+ PHG++ + P V + A + E++ + A ++G V +
Sbjct: 268 LGA-------------FYNTPHGVANAILLPHVMRYNADFTGEKYRDIARVMGVKVEGMS 314
Query: 373 KADAV 377
+A
Sbjct: 315 LEEAR 319
Score = 97.0 bits (240), Expect = 3e-22
Identities = 66/282 (23%), Positives = 111/282 (39%), Gaps = 35/282 (12%)
Query: 377 VPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDV 436
+PTT+GT +E T + E + K + P + ID +P + A +G D
Sbjct: 137 IPTTAGTAAEVTINYVITDEEKRRKFVCVDPHDIPQVAFIDADMMDGMPPALKAATGVDA 196
Query: 437 FCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDD 496
HA+E +G ++D A++ I + +V D
Sbjct: 197 LTHAIE-------------------GYITRGAWALTDALHIKAIEIIAGALRGSVAGDKD 237
Query: 497 LEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVM 556
A M L +AG+GF N G+ L HG+++P+ PHG++ +
Sbjct: 238 --AGEEMALGQYVAGMGFSNVGLGLVHGMAHPLGA-------------FYNTPHGVANAI 282
Query: 557 SAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVL 616
P V + A + E++ + A ++G V + +A + V + I L+ +
Sbjct: 283 LLPHVMRYNADFTGEKYRDIARVMGVKVEGMSLEEARNAAVEAVFALNRDVGIPPHLRDV 342
Query: 617 GYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSMS 658
G DIPAL L T PRE + ED+ L+ +
Sbjct: 343 GVRKEDIPALAQAAL-DDVCTGGNPREATLEDIVELYHTAWE 383
>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A
(TM0820) {Thermotoga maritima [TaxId: 2336]}
Length = 398
Score = 126 bits (316), Expect = 5e-32
Identities = 77/354 (21%), Positives = 140/354 (39%), Gaps = 44/354 (12%)
Query: 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPH-LSKLAPVKATLDSLTRHGVKFELFDKV 87
+ I G G ++G ++ N ++V + + K +DSL +HG+++ V
Sbjct: 13 TKIVFGRGTIPKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGV 72
Query: 88 RVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGK 147
+ P EA + + + +A + VGGGSV+D+ KA + +
Sbjct: 73 KPNPVLSKVHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGALYEGDIWDAF------I 126
Query: 148 GKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLS 207
GK P+ + T S TG+E G ++ E K K G++++AL P + +IDP +
Sbjct: 127 GKYQIEKALPIFDVLTISATGTEMNGNAVITNEKTKEKYGVSSKALYPKVSIIDPSVQFT 186
Query: 208 LPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267
LP+ T Y D H LE + +S+ A ++TI
Sbjct: 187 LPKEQTVYGAVDAISHILEYYF-------------------DGSSPEISNEIAEGTIRTI 227
Query: 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNA----GVHLCHGLSYPISGNVKTFHPA 323
+ +R + DD EAR+++ ++ +A G G CH + + +S
Sbjct: 228 MKMTERLIEKPDDYEARANLAWSATIALNGTMAVGRRGGEWACHRIEHSLSA-------- 279
Query: 324 GYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAE-LLGADVSRVKKADA 376
I HG + + PA + +P + A+ + G + +
Sbjct: 280 -----LYDIAHGAGLAIVFPAWMKYVYRKNPAQFERFAKKIFGFEGEGEELILK 328
Score = 90.9 bits (224), Expect = 4e-20
Identities = 64/341 (18%), Positives = 121/341 (35%), Gaps = 49/341 (14%)
Query: 329 HPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETT 388
++ G V+ + A E I A + + + V T S TG+E
Sbjct: 94 EAVLGVGGGSVVDSAKAVAAGAL--YEGDIWDAFIGKYQIEKALPIFDVLTISATGTEMN 151
Query: 389 GVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALP 448
G ++ E K K G++++AL P + +IDP +LP+ T Y D H LE +
Sbjct: 152 GNAVITNEKTKEKYGVSSKALYPKVSIIDPSVQFTLPKEQTVYGAVDAISHILEYYF--- 208
Query: 449 YTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASA 508
+S+ A ++TI + +R + DD EAR+++ ++
Sbjct: 209 ----------------DGSSPEISNEIAEGTIRTIMKMTERLIEKPDDYEARANLAWSAT 252
Query: 509 MAGVGFGNA----GVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNF 564
+A G G CH + + +S I HG + + PA +
Sbjct: 253 IALNGTMAVGRRGGEWACHRIEHSLSA-------------LYDIAHGAGLAIVFPAWMKY 299
Query: 565 TAASSPERHIEAAE-LLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADI 623
+P + A+ + G + + G + + ++ ++ LK G DI
Sbjct: 300 VYRKNPAQFERFAKKIFGFEGEGEELILKG---IEAFKNWLKKVGAPVSLKDAGIPEEDI 356
Query: 624 PALVTGTLPQHR-------ITKLAPREQSEEDLANLFENSM 657
+V + + ED+ + + +
Sbjct: 357 DKIVDNVMLLVEKNLKPKGASLGRIMVLEREDVREILKLAA 397
>d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga
maritima [TaxId: 2336]}
Length = 359
Score = 120 bits (301), Expect = 2e-30
Identities = 83/359 (23%), Positives = 141/359 (39%), Gaps = 45/359 (12%)
Query: 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATL-DSLTRHGVKFELFDKV 87
+ + G + + G +++++ +R V+T SK L L + +E+FD+V
Sbjct: 8 TDVFFGEKILEKRG-NIIDLLGKRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEV 66
Query: 88 RVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGK 147
P+ D+ ++A + R+ D + +GGGS +D KA + + + D
Sbjct: 67 EENPSFDNVMKAVERYRNDSFDFVVGLGGGSPMDFAKAVAVLLKEKDLSVEDLY------ 120
Query: 148 GKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLS 207
+ P++ IPTT+GTGSE T SI + P +DP +T S
Sbjct: 121 DREKVKHWLPVVEIPTTAGTGSEVTPYSILTDPEGNKRGCTLM---FPVYAFLDPRYTYS 177
Query: 208 LPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267
+ + +T +G D HA+E + + P SD A A++ I
Sbjct: 178 MSDELTLSTGVDALSHAVEGYL-------------------SRKSTPPSDALAIEAMKII 218
Query: 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSD 327
+ +A + + EAR M +AS +AG+ G L H L YP++
Sbjct: 219 HRNLPKA--IEGNREARKKMFVASCLAGMVIAQTGTTLAHALGYPLTTEKG--------- 267
Query: 328 DHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSE 386
I HG + M P V PE+ + G + + K + SE
Sbjct: 268 ----IKHGKATGMVLPFVMEVMKEEIPEKVDTVNHIFGGSLLKFLKELGLYEKVAVSSE 322
Score = 77.8 bits (190), Expect = 5e-16
Identities = 59/284 (20%), Positives = 104/284 (36%), Gaps = 57/284 (20%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
+PTT+GTGSE T SI + P +DP +T S+ + +T +G D
Sbjct: 133 EIPTTAGTGSEVTPYSILTDPEGNKRGCTLM---FPVYAFLDPRYTYSMSDELTLSTGVD 189
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
HA+E + + P SD A A++ I + +A +
Sbjct: 190 ALSHAVEGYL-------------------SRKSTPPSDALAIEAMKIIHRNLPKA--IEG 228
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
+ EAR M +AS +AG+ G L H L YP++ I HG +
Sbjct: 229 NREARKKMFVASCLAGMVIAQTGTTLAHALGYPLTTEKG-------------IKHGKATG 275
Query: 556 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKV 615
M P V PE+ + G + ++ ++ + +
Sbjct: 276 MVLPFVMEVMKEEIPEKVDTVNHIFGGSL----------------LKFLKELGL---YEK 316
Query: 616 LGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSMSV 659
+ +S ++ V + + K P + E + N++ ++ V
Sbjct: 317 VAVSSEELEKWVEKGS-RAKHLKNTPGTFTPEKIRNIYREALGV 359
>d1oj7a_ e.22.1.2 (A:) Hypothetical oxidoreductase yqhD {Escherichia
coli [TaxId: 562]}
Length = 390
Score = 114 bits (286), Expect = 4e-28
Identities = 66/337 (19%), Positives = 126/337 (37%), Gaps = 34/337 (10%)
Query: 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR 88
+ I G G + + + A+ + + K + LD+L G+ F +
Sbjct: 13 TRILFGKGAIAGLR-EQIPHDARVLITYGGGSVKKTGVLDQVLDAL--KGMDVLEFGGIE 69
Query: 89 VEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKG 148
P ++ + A K VR + +AVGGGSV+D K PE ++ + G
Sbjct: 70 PNPAYETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHI---LQTG 126
Query: 149 KPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSL 208
P+ + T TGSE+ ++ + K + ++P ++DP++T +L
Sbjct: 127 GKEIKSAIPMGCVLTLPATGSESNAGAVISRKTTGDKQAFHSAHVQPVFAVLDPVYTYTL 186
Query: 209 PERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIR 268
P R A D F H +E + P + D +A L T+
Sbjct: 187 PPRQVANGVVDAFVHTVEQYVTKPVD------------------AKIHDRFAEGILLTLI 228
Query: 269 QYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDD 328
+ +A+ ++ + R+++ A+ A G AGV T
Sbjct: 229 EDGPKALKEPENYDVRANVMWAATQALNGLIGAGVPQDWA----------THMLGHELTA 278
Query: 329 HPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLG 365
+ H ++ + PA++N + + ++ AE +
Sbjct: 279 MHGLDHAQTLAIVLPALWNEKRDTKRAKLLQYAERVW 315
Score = 94.7 bits (234), Expect = 2e-21
Identities = 52/329 (15%), Positives = 112/329 (34%), Gaps = 29/329 (8%)
Query: 328 DHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSET 387
+ G SV+ + + G ++ V T TGSE+
Sbjct: 90 TFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATGSES 149
Query: 388 TGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTAL 447
++ + K + ++P ++DP++T +LP R A D F H +E +
Sbjct: 150 NAGAVISRKTTGDKQAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTK 209
Query: 448 PYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLAS 507
P + D +A L T+ + +A+ ++ + R+++ A+
Sbjct: 210 PVD------------------AKIHDRFAEGILLTLIEDGPKALKEPENYDVRANVMWAA 251
Query: 508 AMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAA 567
A G AGV T + H ++ + PA++N
Sbjct: 252 TQALNGLIGAGVPQDWA----------THMLGHELTAMHGLDHAQTLAIVLPALWNEKRD 301
Query: 568 SSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALV 627
+ + ++ AE + +++ + R + +Q+ + L G + IPAL+
Sbjct: 302 TKRAKLLQYAERVW-NITEGSDDERIDAAIAATRNFFEQLGVPTHLSDYGLDGSSIPALL 360
Query: 628 TGTLPQHRITKLAPREQSEEDLANLFENS 656
+ + + ++E +
Sbjct: 361 KKLEEHGMTQLGENHDITLDVSRRIYEAA 389
>d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 366
Score = 100 bits (248), Expect = 2e-23
Identities = 56/347 (16%), Positives = 107/347 (30%), Gaps = 52/347 (14%)
Query: 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR 88
+ G V ++ + + + V+ D + K+A ++ L + + E
Sbjct: 10 AKYVQGKNVITKIA-NYLEGIGNKTVVIADEIVWKIA-GHTIVNELKKGNIAAEEVV-FS 66
Query: 89 VEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKG 148
E + + R + I VGGG +DT KA
Sbjct: 67 GEASRNEVERIANIARKAEAAIVIGVGGGKTLDTAKAVADELDAY--------------- 111
Query: 149 KPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSL 208
++ +PT + T + T+ + Y P L L+D +
Sbjct: 112 ---------IVIVPTAASTDAPTSAL-SVIYSDDGVFESYRFYKKNPDLVLVDTKIIANA 161
Query: 209 PERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIR 268
P R+ A D +E+ + + +T A ++ A QT+
Sbjct: 162 PPRLLASGIADALATWVEARSVIKSGGKTM---------AGGIPTIAAEAIAEKCEQTLF 212
Query: 269 QYFKRAVYNQDDLEA----RSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAG 324
+Y K A + + + + ++G+GF + G+ H + + H
Sbjct: 213 KYGKLAYESVKAKVVTPALEAVVEANTLLSGLGFESGGLAAAHAIHNGFTALEGEIHH-- 270
Query: 325 YSDDHPIIPHGLSV--VMSAPAVFNFTAASSPERHIEAAELLGADVS 369
+ HG V + ER+IE L V+
Sbjct: 271 -------LTHGEKVAFGTLVQLALEEHSQQEIERYIELYLCLDLPVT 310
Score = 72.7 bits (177), Expect = 2e-14
Identities = 46/285 (16%), Positives = 86/285 (30%), Gaps = 50/285 (17%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
VPT + T + T+ + Y P L L+D + P R+ A D
Sbjct: 114 IVPTAASTDAPTSAL-SVIYSDDGVFESYRFYKKNPDLVLVDTKIIANAPPRLLASGIAD 172
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
+E+ + + +T A ++ A QT+ +Y K A +
Sbjct: 173 ALATWVEARSVIKSGGKTM---------AGGIPTIAAEAIAEKCEQTLFKYGKLAYESVK 223
Query: 496 DLEA----RSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 551
+ + + ++G+GF + G+ H + + H + HG
Sbjct: 224 AKVVTPALEAVVEANTLLSGLGFESGGLAAAHAIHNGFTALEGEIHH---------LTHG 274
Query: 552 LSV--VMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKI 609
V + ER+IE L V+ L D
Sbjct: 275 EKVAFGTLVQLALEEHSQQEIERYIELYLCLDLPVT----------LED----------- 313
Query: 610 ENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFE 654
+K+ + DI + + T + +D+A+
Sbjct: 314 ---IKLKDASREDILKVAKAATAE-GETIHNAFNVTADDVADAIF 354
>d1kq3a_ e.22.1.2 (A:) Glycerol dehydrogenase {Thermotoga maritima
[TaxId: 2336]}
Length = 364
Score = 88.2 bits (217), Expect = 2e-19
Identities = 52/349 (14%), Positives = 102/349 (29%), Gaps = 54/349 (15%)
Query: 26 MASSTI-----RIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVK 80
M ++TI G G + + ++ +R V+ D + K + S T+ V
Sbjct: 2 MITTTIFPGRYVQGAGAINILE-EELSRFGERAFVVIDDFVDKNVLGENFFSSFTKVRVN 60
Query: 81 FELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDY 140
++F + +E + + D + +GGG +DT KA P
Sbjct: 61 KQIFGGECSDEE----IERLSGLVEEETDVVVGIGGGKTLDTAKAVAYKLKKP------- 109
Query: 141 VNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLI 200
++ +PT + T + + +S+ + K + + +
Sbjct: 110 -----------------VVIVPTIASTDAPCSALSVIYTPNGEFKRYLFLPRNPDVVL-V 151
Query: 201 DPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260
D P R D E+ + +
Sbjct: 152 DTEIVAKAPARFLVAGMGDALATWFEAESCKQKY------APNMTGRLGSMTAYALARLC 205
Query: 261 RFALQTIRQYFKRAVYNQDDLEARSHMHL-ASAMAGVGFGNAGVHLCHGLSYPISGNVKT 319
L KR+V + A + + ++G+GF + G+ H
Sbjct: 206 YETLLEYGVLAKRSVEEKSVTPALEKIVEANTLLSGLGFESGGLAAAHA----------I 255
Query: 320 FHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADV 368
+ ++ HG V + A T P + IE +V
Sbjct: 256 HNGLTVLENTHKYLHGEKVAIGVLASLFLTDK--PRKMIEEVYSFCEEV 302
Score = 69.7 bits (169), Expect = 3e-13
Identities = 32/284 (11%), Positives = 76/284 (26%), Gaps = 46/284 (16%)
Query: 375 DAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGF 434
VPT + T + + +S+ + K + + +D P R
Sbjct: 111 VIVPTIASTDAPCSALSVIYTPNGEFKRYLFLPRNPDVVL-VDTEIVAKAPARFLVAGMG 169
Query: 435 DVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQ 494
D E+ + + L KR+V +
Sbjct: 170 DALATWFEAESCKQKY------APNMTGRLGSMTAYALARLCYETLLEYGVLAKRSVEEK 223
Query: 495 DDLEARSHMHL-ASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLS 553
A + + ++G+GF + G+ H + ++ HG
Sbjct: 224 SVTPALEKIVEANTLLSGLGFESGGLAAAHA----------IHNGLTVLENTHKYLHGEK 273
Query: 554 VVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGL 613
V + A D + + + V + +++ + L
Sbjct: 274 VAIGVLASLFL-------------------------TDKPRKMIEEVYSFCEEVGLPTTL 308
Query: 614 KVLGY---TSADIPALVTGTLPQHRITKLAPREQSEEDLANLFE 654
+G + D+ + ++ P+ + +D+ +
Sbjct: 309 AEIGLDGVSDEDLMKVAEKACDKNETIHNEPQPVTSKDVFFALK 352
>d1sg6a_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Aspergillus
nidulans [TaxId: 162425]}
Length = 389
Score = 38.8 bits (89), Expect = 0.002
Identities = 16/128 (12%), Positives = 39/128 (30%), Gaps = 24/128 (18%)
Query: 30 TIRIGPGVTREVGMDMV--NMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKV 87
+I G+ R + + + ++TD ++ + + ++ + + ++
Sbjct: 11 SIIADFGLWRNYVAKDLISDCSSTTYVLVTDTNIGSIY-TPSFEEAFRKRAAEITPSPRL 69
Query: 88 RV--EPTGDSFLEATKFVRSVQ---------------CDAFIAVGGGSVIDTCKAANLYY 130
+ P G E +K ++ IA+GGG + D Y
Sbjct: 70 LIYNRPPG----EVSKSRQTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGFVASTY 125
Query: 131 CDPEAEFL 138
Sbjct: 126 MRGVRYVQ 133
>d1nqua_ c.16.1.1 (A:) Lumazine synthase {Aquifex aeolicus [TaxId:
63363]}
Length = 154
Score = 31.1 bits (70), Expect = 0.23
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 68 KATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVG 115
+ +D + RHG + E VRV + + + A + R DA IA+G
Sbjct: 32 EGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARKEDIDAVIAIG 79
>d1xtta1 c.61.1.1 (A:2-216) Uracil PRTase, Upp {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 215
Score = 28.8 bits (64), Expect = 1.8
Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 11/93 (11%)
Query: 328 DHPIIPHGLSVVMSA---PAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTG 384
D PI H L+ + F +LG ++S + V + G
Sbjct: 6 DKPITLHILTQLRDKYTDQINFRKNLV-------RLGRILGYEISNTLDYEIVEVETPLG 58
Query: 385 SETTGVSIFDYEPLKAKTGIANRALKPTLGLID 417
+T GV I D + I A+ GL+
Sbjct: 59 VKTKGVDITDLNNIVI-INILRAAVPLVEGLLK 90
>d1e9ya1 b.85.3.1 (A:106-238) Urease, beta-subunit {Helicobacter
pylori [TaxId: 210]}
Length = 133
Score = 25.9 bits (57), Expect = 8.3
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 5/30 (16%)
Query: 19 DKEYAFEM-----ASSTIRIGPGVTREVGM 43
D+E F A + +R PG + V +
Sbjct: 52 DREKTFGKRLDIAAGTAVRFEPGEEKSVEL 81
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.400
Gapped
Lambda K H
0.267 0.0562 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,455,603
Number of extensions: 117120
Number of successful extensions: 277
Number of sequences better than 10.0: 1
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 16
Length of query: 660
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 569
Effective length of database: 1,158,166
Effective search space: 658996454
Effective search space used: 658996454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.7 bits)