BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2429
(108 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P29522|EF1B2_BOMMO Elongation factor 1-beta' OS=Bombyx mori PE=1 SV=2
Length = 222
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/85 (72%), Positives = 72/85 (84%)
Query: 17 EPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCV 76
+PALIAKS+I+LDVKPW D+TDMKEME QVR I+M+GLLWGASKL P+ YGINKLQI CV
Sbjct: 130 KPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCV 189
Query: 77 VEDDLVSVDALQESIQDIEDYVSLV 101
+EDD VSVD L E IQ+ ED+V V
Sbjct: 190 IEDDKVSVDLLTEKIQEFEDFVQSV 214
>sp|O96827|EF1B_DROME Probable elongation factor 1-beta OS=Drosophila melanogaster
GN=Ef1beta PE=1 SV=3
Length = 222
Score = 125 bits (314), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 58/82 (70%), Positives = 69/82 (84%)
Query: 20 LIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVED 79
LIAKS+++LDVKPW D+TDMKEME VR I+MDGLLWGASKL P+ YGINKLQI CV+ED
Sbjct: 133 LIAKSSVLLDVKPWDDETDMKEMENNVRTIEMDGLLWGASKLVPVGYGINKLQIMCVIED 192
Query: 80 DLVSVDALQESIQDIEDYVSLV 101
D VS+D LQE I++ ED+V V
Sbjct: 193 DKVSIDLLQEKIEEFEDFVQSV 214
>sp|P12262|EF1B_ARTSA Elongation factor 1-beta OS=Artemia salina PE=1 SV=3
Length = 207
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 70/84 (83%)
Query: 18 PALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVV 77
PA++AKS++ILD+KPW D+TDM EMEK VR++QMDGL+WGA+KL PLAYGI KL I CVV
Sbjct: 116 PAIVAKSSVILDIKPWDDETDMAEMEKLVRSVQMDGLVWGAAKLIPLAYGIKKLSIMCVV 175
Query: 78 EDDLVSVDALQESIQDIEDYVSLV 101
EDD VS+D LQE I + ED+V V
Sbjct: 176 EDDKVSIDELQEKISEFEDFVQSV 199
>sp|P32192|EF1D_ARTSA Elongation factor 1-delta OS=Artemia salina PE=1 SV=2
Length = 237
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 58/88 (65%), Positives = 72/88 (81%), Gaps = 1/88 (1%)
Query: 14 SHVEPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQI 73
SH +P +IAKS+I+LD+KPW D+TDM ME++VR+I MDGL+WGASKL P+A+G+ KLQI
Sbjct: 143 SH-KPTVIAKSSILLDIKPWDDETDMGAMEREVRSIAMDGLIWGASKLVPVAFGVKKLQI 201
Query: 74 SCVVEDDLVSVDALQESIQDIEDYVSLV 101
SCVVEDD VSVD L E I+ EDYV V
Sbjct: 202 SCVVEDDKVSVDELVEKIEAFEDYVQSV 229
>sp|Q6DET9|EF1B_XENTR Elongation factor 1-beta OS=Xenopus tropicalis GN=eef1b PE=2 SV=3
Length = 228
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 68/82 (82%)
Query: 17 EPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCV 76
+PALIAKS+I+LDVKPW D+TDM ++E+ VR+IQM+GL+WGASKL P+ YGI KLQI CV
Sbjct: 136 KPALIAKSSILLDVKPWDDETDMAKLEECVRSIQMEGLVWGASKLVPVGYGIKKLQIQCV 195
Query: 77 VEDDLVSVDALQESIQDIEDYV 98
VEDD V D L+E+I ED+V
Sbjct: 196 VEDDKVGTDVLEENITAFEDFV 217
>sp|P29693|EF1D_XENLA Elongation factor 1-delta OS=Xenopus laevis GN=eef1d PE=1 SV=1
Length = 265
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/94 (57%), Positives = 68/94 (72%)
Query: 8 KLFLLPSHVEPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYG 67
K + +P +IAKS+I+LDVKPW D+TDM ++E+ VR +QMDGL+WG+SKL P+ YG
Sbjct: 164 KQYAEKKSKKPGVIAKSSILLDVKPWDDETDMAKLEECVRTVQMDGLVWGSSKLVPVGYG 223
Query: 68 INKLQISCVVEDDLVSVDALQESIQDIEDYVSLV 101
I KLQI CVVEDD V D L+E I EDYV V
Sbjct: 224 IKKLQIQCVVEDDKVGTDILEEEITKFEDYVQSV 257
>sp|P29692|EF1D_HUMAN Elongation factor 1-delta OS=Homo sapiens GN=EEF1D PE=1 SV=5
Length = 281
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/84 (63%), Positives = 66/84 (78%)
Query: 18 PALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVV 77
PAL+AKS+I+LDVKPW D+TDM ++E VR+IQ+DGL+WGASKL P+ YGI KLQI CVV
Sbjct: 190 PALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVV 249
Query: 78 EDDLVSVDALQESIQDIEDYVSLV 101
EDD V D L+E I E++V V
Sbjct: 250 EDDKVGTDLLEEEITKFEEHVQSV 273
>sp|Q4R3D4|EF1D_MACFA Elongation factor 1-delta OS=Macaca fascicularis GN=EEF1D PE=2 SV=2
Length = 281
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 67/85 (78%)
Query: 17 EPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCV 76
+PAL+AKS+I+LDVKPW D+TDM ++E VR+IQ+DGL+WGASKL P+ YGI KLQI CV
Sbjct: 189 KPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCV 248
Query: 77 VEDDLVSVDALQESIQDIEDYVSLV 101
VEDD V D L+E I E++V V
Sbjct: 249 VEDDKVGTDLLEEEITKFEEHVQSV 273
>sp|Q9VL18|EF1D_DROME Probable elongation factor 1-delta OS=Drosophila melanogaster
GN=eEF1delta PE=1 SV=1
Length = 256
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 65/82 (79%)
Query: 20 LIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVED 79
+IAKSNIILDVKPW D+TD+K ME ++R I DGLLWGASK P+A+GI KL ISCVVED
Sbjct: 167 IIAKSNIILDVKPWDDETDLKVMETEIRKITQDGLLWGASKFVPVAFGIQKLSISCVVED 226
Query: 80 DLVSVDALQESIQDIEDYVSLV 101
D VS+D L E I+ +ED+V V
Sbjct: 227 DKVSIDWLTEEIEKLEDFVQSV 248
>sp|Q9YGQ1|EF1B_CHICK Elongation factor 1-beta OS=Gallus gallus GN=EEF1B PE=2 SV=3
Length = 225
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/82 (64%), Positives = 66/82 (80%)
Query: 17 EPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCV 76
+PAL+AKS+I+LDVKPW D+TDM ++E+ VR+IQ DGL+WG+SKL P+ YGI KLQI CV
Sbjct: 133 KPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCV 192
Query: 77 VEDDLVSVDALQESIQDIEDYV 98
VEDD V D L+E I EDYV
Sbjct: 193 VEDDKVGTDMLEEQITAFEDYV 214
>sp|P24534|EF1B_HUMAN Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2 PE=1 SV=3
Length = 225
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/82 (64%), Positives = 66/82 (80%)
Query: 17 EPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCV 76
+PAL+AKS+I+LDVKPW D+TDM ++E+ VR+IQ DGL+WG+SKL P+ YGI KLQI CV
Sbjct: 133 KPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCV 192
Query: 77 VEDDLVSVDALQESIQDIEDYV 98
VEDD V D L+E I EDYV
Sbjct: 193 VEDDKVGTDMLEEQITAFEDYV 214
>sp|A5D989|EF1D_BOVIN Elongation factor 1-delta OS=Bos taurus GN=EEF1D PE=2 SV=2
Length = 280
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 51/84 (60%), Positives = 66/84 (78%)
Query: 18 PALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVV 77
PAL+AKS+I+LDVKPW D+TDM ++E VR++Q+DGL+WG+SKL P+ YGI KLQI CVV
Sbjct: 189 PALVAKSSILLDVKPWDDETDMAQLEACVRSVQLDGLVWGSSKLVPVGYGIRKLQIQCVV 248
Query: 78 EDDLVSVDALQESIQDIEDYVSLV 101
EDD V D L+E I E++V V
Sbjct: 249 EDDKVGTDQLEEEITKFEEHVQSV 272
>sp|P53787|EF1D_RABIT Elongation factor 1-delta OS=Oryctolagus cuniculus GN=EEF1D PE=2
SV=1
Length = 280
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/84 (61%), Positives = 65/84 (77%)
Query: 18 PALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVV 77
PAL+AKS+I+LDVKPW D+TDM +E VR++Q+DGL+WGASKL P+ YGI KLQI CVV
Sbjct: 189 PALVAKSSILLDVKPWDDETDMARLEACVRSVQLDGLVWGASKLVPVGYGIRKLQIQCVV 248
Query: 78 EDDLVSVDALQESIQDIEDYVSLV 101
EDD V D L+E I E++V V
Sbjct: 249 EDDKVGTDLLEEEITKFEEHVQSV 272
>sp|P30151|EF1B_XENLA Elongation factor 1-beta OS=Xenopus laevis GN=eef1b PE=1 SV=3
Length = 227
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/82 (64%), Positives = 66/82 (80%)
Query: 17 EPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCV 76
+P LIAKS+I+LDVKPW D+TDM ++E+ +R+IQMDGLLWG+SKL P+ YGI KLQI CV
Sbjct: 135 KPTLIAKSSILLDVKPWDDETDMGKLEECLRSIQMDGLLWGSSKLVPVGYGIKKLQIQCV 194
Query: 77 VEDDLVSVDALQESIQDIEDYV 98
VEDD V D L+E I ED+V
Sbjct: 195 VEDDKVGTDVLEEKITAFEDFV 216
>sp|P34826|EF1B_RABIT Elongation factor 1-beta OS=Oryctolagus cuniculus GN=EEF1B PE=1
SV=2
Length = 225
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/82 (64%), Positives = 66/82 (80%)
Query: 17 EPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCV 76
+PAL+AKS+I+LDVKPW D+TDM ++E+ VR+IQ DGL+WG+SKL P+ YGI KLQI CV
Sbjct: 133 KPALVAKSSILLDVKPWDDETDMVKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCV 192
Query: 77 VEDDLVSVDALQESIQDIEDYV 98
VEDD V D L+E I EDYV
Sbjct: 193 VEDDKVGTDMLEEQITAFEDYV 214
>sp|Q68FR9|EF1D_RAT Elongation factor 1-delta OS=Rattus norvegicus GN=Eef1d PE=1 SV=2
Length = 281
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 66/85 (77%)
Query: 17 EPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCV 76
+P L+AKS+I+LDVKPW D+TDM ++E VR+IQ+DGL+WGASKL P+ YGI KLQI CV
Sbjct: 189 KPTLVAKSSILLDVKPWDDETDMAQLETCVRSIQLDGLVWGASKLVPVGYGIRKLQIQCV 248
Query: 77 VEDDLVSVDALQESIQDIEDYVSLV 101
VEDD V D L+E I E++V V
Sbjct: 249 VEDDKVGTDLLEEEITKFEEHVQSV 273
>sp|P57776|EF1D_MOUSE Elongation factor 1-delta OS=Mus musculus GN=Eef1d PE=1 SV=3
Length = 281
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 66/85 (77%)
Query: 17 EPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCV 76
+P L+AKS+I+LDVKPW D+TDM ++E VR+IQ+DGL+WGASKL P+ YGI KLQI CV
Sbjct: 189 KPTLVAKSSILLDVKPWDDETDMAQLETCVRSIQLDGLVWGASKLVPVGYGIRKLQIQCV 248
Query: 77 VEDDLVSVDALQESIQDIEDYVSLV 101
VEDD V D L+E I E++V V
Sbjct: 249 VEDDKVGTDLLEEEITKFEEHVQSV 273
>sp|O70251|EF1B_MOUSE Elongation factor 1-beta OS=Mus musculus GN=Eef1b PE=1 SV=5
Length = 225
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 52/82 (63%), Positives = 66/82 (80%)
Query: 17 EPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCV 76
+PA++AKS+I+LDVKPW D+TDM ++E+ VR+IQ DGL+WG+SKL P+ YGI KLQI CV
Sbjct: 133 KPAVVAKSSILLDVKPWDDETDMTKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCV 192
Query: 77 VEDDLVSVDALQESIQDIEDYV 98
VEDD V D L+E I EDYV
Sbjct: 193 VEDDKVGTDMLEEQITAFEDYV 214
>sp|Q5E983|EF1B_BOVIN Elongation factor 1-beta OS=Bos taurus GN=EEF1B PE=2 SV=3
Length = 225
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/82 (62%), Positives = 66/82 (80%)
Query: 17 EPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCV 76
+PAL+AKS+I+LDVKPW D+TDM ++E+ VR+IQ DGL+WG+SKL P+ YGI KLQI CV
Sbjct: 133 KPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCV 192
Query: 77 VEDDLVSVDALQESIQDIEDYV 98
VEDD V D L+E I ++YV
Sbjct: 193 VEDDKVGTDMLEEQITAFDEYV 214
>sp|Q9GRF8|EF1B_DICDI Elongation factor 1-beta OS=Dictyostelium discoideum GN=efa1B PE=1
SV=1
Length = 216
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/89 (61%), Positives = 68/89 (76%), Gaps = 2/89 (2%)
Query: 15 HVEP--ALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQ 72
H +P +IAKS+I+LDVKPW D+TDM E+EK VR+I+MDGL+WGASKL + YGI KL
Sbjct: 120 HKKPKETVIAKSSILLDVKPWDDETDMVELEKCVRSIEMDGLVWGASKLVAVGYGIKKLV 179
Query: 73 ISCVVEDDLVSVDALQESIQDIEDYVSLV 101
I+ VVED VS D L+E I+D EDYV V
Sbjct: 180 INLVVEDLKVSTDELEEKIKDFEDYVQSV 208
>sp|O74173|EF1B_SCHPO Elongation factor 1-beta OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=tef5 PE=2 SV=1
Length = 214
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/78 (61%), Positives = 62/78 (79%)
Query: 21 IAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDD 80
+ KS + LDVKPW D+T M E+EK VR+IQMDGL+WG SKL P+ +G+NK QI+ VVEDD
Sbjct: 126 VHKSLVTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVGFGVNKFQINLVVEDD 185
Query: 81 LVSVDALQESIQDIEDYV 98
VS++ALQE ++ EDYV
Sbjct: 186 KVSLEALQEELEGFEDYV 203
>sp|Q9U2H9|EF1B2_CAEEL Probable elongation factor 1-beta/1-delta 2 OS=Caenorhabditis
elegans GN=Y41E3.10 PE=1 SV=4
Length = 263
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/82 (63%), Positives = 63/82 (76%), Gaps = 1/82 (1%)
Query: 21 IAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDD 80
IAKS++ILDVKPW D+TD+ EMEK VR+I+MDGL+WG +KL P+ YGI KLQI V+ED
Sbjct: 174 IAKSSVILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGYGIKKLQIITVIEDL 233
Query: 81 LVSVDALQESIQ-DIEDYVSLV 101
VSVD L E I D ED+V V
Sbjct: 234 KVSVDDLIEKITGDFEDHVQSV 255
>sp|P34460|EF1B1_CAEEL Probable elongation factor 1-beta/1-delta 1 OS=Caenorhabditis
elegans GN=F54H12.6 PE=1 SV=1
Length = 213
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/82 (63%), Positives = 63/82 (76%), Gaps = 1/82 (1%)
Query: 21 IAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDD 80
IAKS++ILDVKPW D+TD+ EMEK VR+I+MDGL+WG +KL P+ YGI KLQI V+ED
Sbjct: 124 IAKSSVILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGYGIKKLQIITVIEDL 183
Query: 81 LVSVDALQESIQ-DIEDYVSLV 101
VSVD L E I D ED+V V
Sbjct: 184 KVSVDDLIEKITGDFEDHVQSV 205
>sp|Q9SI20|EF1D2_ARATH Elongation factor 1-delta 2 OS=Arabidopsis thaliana GN=At2g18110
PE=2 SV=1
Length = 231
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 62/80 (77%), Gaps = 3/80 (3%)
Query: 22 AKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDL 81
KS++++D+KPW D+TDMK++E+ VR+IQM+GL WGASKL P+ YGI KL I C + DDL
Sbjct: 141 GKSSVLMDIKPWDDETDMKKLEEAVRSIQMEGLFWGASKLVPVGYGIKKLHIMCTIVDDL 200
Query: 82 VSVDAL---QESIQDIEDYV 98
VS+D + Q +++ I +YV
Sbjct: 201 VSIDTMIEEQLTVEPINEYV 220
>sp|P48006|EF1D1_ARATH Elongation factor 1-delta 1 OS=Arabidopsis thaliana GN=At1g30230
PE=2 SV=2
Length = 231
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 63/80 (78%), Gaps = 3/80 (3%)
Query: 22 AKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDL 81
KS++++D+KPW D+TDMK++E+ V++IQM+GL WGASKL P+ YGI KLQI C + DDL
Sbjct: 141 GKSSVLIDIKPWDDETDMKKLEEAVKSIQMEGLFWGASKLVPVGYGIKKLQILCTIVDDL 200
Query: 82 VSVDAL---QESIQDIEDYV 98
VS+D + Q +++ I +YV
Sbjct: 201 VSIDTMIEEQLTVEPINEYV 220
>sp|P32471|EF1B_YEAST Elongation factor 1-beta OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=EFB1 PE=1 SV=4
Length = 206
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 59/73 (80%)
Query: 26 IILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDLVSVD 85
+ LDVKPW D+T+++EM V+AI+M+GL WGA + P+ +GI KLQI+CVVEDD VS+D
Sbjct: 123 VTLDVKPWDDETNLEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDDKVSLD 182
Query: 86 ALQESIQDIEDYV 98
LQ+SI++ ED+V
Sbjct: 183 DLQQSIEEDEDHV 195
>sp|Q717R8|EF1D_SHEEP Elongation factor 1-delta OS=Ovis aries GN=EEF1D PE=2 SV=1
Length = 277
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 41/62 (66%), Positives = 54/62 (87%)
Query: 17 EPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCV 76
+PAL+AKS+I+LDVKPW D+TDM ++E VR++Q+DGL+WG+SKL P+ YGI KLQI CV
Sbjct: 188 KPALVAKSSILLDVKPWDDETDMAQLEACVRSVQLDGLVWGSSKLVPVGYGIRKLQIQCV 247
Query: 77 VE 78
VE
Sbjct: 248 VE 249
>sp|Q40680|EF1D1_ORYSJ Elongation factor 1-delta 1 OS=Oryza sativa subsp. japonica
GN=Os07g0614500 PE=2 SV=3
Length = 229
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 58/76 (76%), Gaps = 6/76 (7%)
Query: 22 AKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDL 81
KS+++LDVKPW D+TDM ++E+ VR ++M+GLLWGASKL P+ YGI KLQI + DDL
Sbjct: 139 GKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDL 198
Query: 82 VSVDALQESIQDIEDY 97
VSVD+L IEDY
Sbjct: 199 VSVDSL------IEDY 208
>sp|Q40682|EF1D2_ORYSJ Elongation factor 1-delta 2 OS=Oryza sativa subsp. japonica
GN=Os03g0406200 PE=2 SV=3
Length = 226
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 58/76 (76%), Gaps = 6/76 (7%)
Query: 22 AKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDL 81
KS+++LDVKPW D+TDM ++E+ VR ++M+GLLWGASKL P+ YGI KLQI + DDL
Sbjct: 136 GKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDL 195
Query: 82 VSVDALQESIQDIEDY 97
VSVD+L IEDY
Sbjct: 196 VSVDSL------IEDY 205
>sp|P93447|EF1D_PIMBR Elongation factor 1-delta OS=Pimpinella brachycarpa PE=2 SV=3
Length = 226
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/78 (57%), Positives = 59/78 (75%), Gaps = 6/78 (7%)
Query: 22 AKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDL 81
KS+++LDVKPW D+TDM ++E+ VR+I+MDGLLWGASKL + YGI KLQI + DDL
Sbjct: 136 GKSSVLLDVKPWDDETDMTKLEEAVRSIKMDGLLWGASKLVAVGYGIKKLQIMLTIVDDL 195
Query: 82 VSVDALQESIQDIEDYVS 99
VSVD L +EDY++
Sbjct: 196 VSVDDL------VEDYLT 207
>sp|P29545|EF1B_ORYSJ Elongation factor 1-beta OS=Oryza sativa subsp. japonica
GN=Os07g0662500 PE=1 SV=3
Length = 224
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 53/64 (82%)
Query: 26 IILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDLVSVD 85
++LDVKPW D+TDMK++E+ VR++QM+GL WGASKL P+ YGI KLQI + DDLVSVD
Sbjct: 138 VLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKLQIMLTIVDDLVSVD 197
Query: 86 ALQE 89
+L E
Sbjct: 198 SLIE 201
>sp|Q84WM9|EF1B1_ARATH Elongation factor 1-beta 1 OS=Arabidopsis thaliana GN=At5g12110
PE=2 SV=2
Length = 228
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 58/78 (74%), Gaps = 6/78 (7%)
Query: 22 AKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDL 81
KS+++L+VKPW D+TDMK++E+ VR++QM GL WGASKL P+ YGI KL I + DDL
Sbjct: 138 GKSSVLLEVKPWDDETDMKKLEEAVRSVQMPGLTWGASKLVPVGYGIKKLTIMMTIVDDL 197
Query: 82 VSVDALQESIQDIEDYVS 99
VSVD L IED+++
Sbjct: 198 VSVDNL------IEDHLT 209
>sp|Q9SCX3|EF1B2_ARATH Elongation factor 1-beta 2 OS=Arabidopsis thaliana GN=At5g19510
PE=1 SV=1
Length = 224
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 59/92 (64%), Gaps = 11/92 (11%)
Query: 17 EPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCV 76
+P KS++++DVKPW D+TDMK++E+ VR ++M GL WGASKL P+ YGI KL I
Sbjct: 129 KPKESGKSSVLMDVKPWDDETDMKKLEEAVRGVEMPGLFWGASKLVPVGYGIKKLTIMFT 188
Query: 77 VEDDLVSVDALQESIQDIEDYVSLVFLKCVPN 108
+ DDLVS D L IED FL PN
Sbjct: 189 IVDDLVSPDNL------IED-----FLTSEPN 209
>sp|O81918|EF1D_BETVU Elongation factor 1-delta OS=Beta vulgaris PE=2 SV=3
Length = 231
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 59/80 (73%), Gaps = 3/80 (3%)
Query: 22 AKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDL 81
KS+++LDVKPW D+TDMK++E+ VR++Q +GL GASKL P+ YGI KL I + DDL
Sbjct: 141 GKSSVLLDVKPWDDETDMKKLEEAVRSVQQEGLTLGASKLVPVGYGIKKLTIMMTIVDDL 200
Query: 82 VSVDALQE---SIQDIEDYV 98
VSVD L E +++ I +YV
Sbjct: 201 VSVDNLIEDYLTVEPINEYV 220
>sp|P78590|EF1B_CANAW Elongation factor 1-beta OS=Candida albicans (strain WO-1) GN=EFB1
PE=1 SV=1
Length = 213
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 57/75 (76%)
Query: 24 SNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDLVS 83
S + LDVKPW D+TD+ E+ V+AI+M+GL WGA + P+ +GI KLQI+ VVED LVS
Sbjct: 128 SIVTLDVKPWDDETDLDELLTNVKAIEMEGLTWGAHQWIPVGFGIKKLQINLVVEDALVS 187
Query: 84 VDALQESIQDIEDYV 98
+D LQ ++++ ED+V
Sbjct: 188 LDDLQAAVEEDEDHV 202
>sp|P29546|EF1B_WHEAT Elongation factor 1-beta OS=Triticum aestivum PE=1 SV=2
Length = 216
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 50/63 (79%)
Query: 22 AKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDL 81
KS++++D+KPW D+TDMK++E+ VR++QM+GL WGASKL P+ YGI KLQI + DDL
Sbjct: 128 GKSSVLMDIKPWDDETDMKKLEEAVRSVQMEGLTWGASKLMPVGYGIKKLQIMLTIIDDL 187
Query: 82 VSV 84
S
Sbjct: 188 AST 190
>sp|P34827|EF1B_TRYCR 25 kDa elongation factor 1-beta OS=Trypanosoma cruzi PE=2 SV=1
Length = 222
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 54/79 (68%)
Query: 20 LIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVED 79
+IAKS+I+ DVKPW D D++ + ++ A++ DGLLWG KL P+A+G+ KLQ V+ED
Sbjct: 133 VIAKSSILFDVKPWDDTVDLQALANKLHAVKRDGLLWGDHKLVPVAFGVKKLQQLIVIED 192
Query: 80 DLVSVDALQESIQDIEDYV 98
D V D L+E I ED V
Sbjct: 193 DKVLSDDLEELIMSFEDEV 211
>sp|P29412|EF1B_PIG Elongation factor 1-beta OS=Sus scrofa GN=EEF1B PE=1 SV=1
Length = 224
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 45/82 (54%)
Query: 17 EPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCV 76
+PAL+AKS VKPW D+ M ++E+ V +IQ DGL+ L P+ YGI
Sbjct: 132 KPALVAKSXXXXXVKPWDDEXXMAKLEEXVXSIQADGLVXXXXXLVPVGYGIKXXXXXXX 191
Query: 77 VEDDLVSVDALQESIQDIEDYV 98
DD V D L+E I EDYV
Sbjct: 192 XXDDKVGTDMLEEQITAFEDYV 213
>sp|A9A5W3|EF1B_NITMS Elongation factor 1-beta OS=Nitrosopumilus maritimus (strain
SCM1) GN=ef1b PE=3 SV=1
Length = 93
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 26 IILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDLVSVD 85
I + P G D D+ ++ + +++ +G+ PLA+G+ L+ V+ED D
Sbjct: 6 FITKILPEGTDVDLDKLAETLKSTLPEGIQMKRHAKEPLAFGLEFLKAEFVLEDKEGQSD 65
Query: 86 ALQESIQDIE 95
AL+ ++++ E
Sbjct: 66 ALENAVKNTE 75
>sp|Q8TYN8|EF1B_METKA Elongation factor 1-beta OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=ef1b PE=3 SV=1
Length = 94
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 20 LIAKSNIILDVK--PWGDDTDMKEMEKQVRAI--QMDGLLWGASKLAPLAYGINKLQISC 75
+I S +++D+K P D D +E+++ +R MD + + P+A+G+ +++
Sbjct: 1 MIVVSKVLVDLKVLPESADVDYEELKEAIREKLESMDVVDIEGMEEEPIAFGLKAIRVKV 60
Query: 76 VVEDDLVSVDALQESIQDIED 96
VV D DAL+++++++++
Sbjct: 61 VVPDAEGGTDALEDALKEVDE 81
>sp|B8GF55|EF1B_METPE Elongation factor 1-beta OS=Methanosphaerula palustris (strain
ATCC BAA-1556 / DSM 19958 / E1-9c) GN=ef1b PE=3 SV=1
Length = 85
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 17/77 (22%)
Query: 26 IILDVKPWGDDTDMKEMEKQVRA-------IQMDGLLWGASKLAPLAYGINKLQISCVVE 78
+IL V P D D++ ++ +RA IQ + P+ +G+ L++ VV
Sbjct: 6 LILKVMPESPDVDLEALKAAMRAKVPSIQDIQEE----------PIGFGLKALKVMAVVS 55
Query: 79 DDLVSVDALQESIQDIE 95
D DAL+E++ IE
Sbjct: 56 DQGGETDALEEALSSIE 72
>sp|Q6NY82|UBE2F_DANRE NEDD8-conjugating enzyme UBE2F OS=Danio rerio GN=ube2f PE=2 SV=1
Length = 185
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 46 VRAIQMDGLLWGASK-LAPLAYGINKLQISCVVEDDLVSVDALQESIQDIEDYVSLV 101
+R +DG W ++ L + +G+N L + DD +++DA + ++D ED+ + V
Sbjct: 120 LREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIDAAEHHLRDKEDFRNKV 176
>sp|A2SR44|EF1B_METLZ Elongation factor 1-beta OS=Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z) GN=ef1b PE=3 SV=1
Length = 86
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 26 IILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDLVSVD 85
+IL + P D D+++++ +RA ++ G+ K+ P+ +G++ ++I+ + EDD + D
Sbjct: 6 VILKIMPESPDVDLEKLQADIRA-KVSGIE--DMKVEPIGFGLSAIKIAMITEDDEGAGD 62
Query: 86 ALQ 88
++
Sbjct: 63 KIE 65
>sp|Q12WD9|EF1B_METBU Elongation factor 1-beta OS=Methanococcoides burtonii (strain DSM
6242) GN=ef1b PE=3 SV=1
Length = 89
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 32/52 (61%)
Query: 28 LDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVED 79
+ + P G DTD+ +++ ++ A+ +G S++ P+A+G+ L++ +V D
Sbjct: 8 MKIMPEGVDTDLDDLKIRLEAVLPEGASIFGSEIEPVAFGLKALKLVVLVGD 59
>sp|O29681|EF1B_ARCFU Elongation factor 1-beta OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=ef1b PE=3 SV=1
Length = 88
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 30 VKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVED 79
V P D D+ E+ ++++ IQM+G+ S + P+A+G+ + + V+ D
Sbjct: 10 VMPSDVDVDLNEVLEKIKNIQMEGVEIRDSAIQPIAFGLKAIVLMAVMPD 59
>sp|Q5ZKX6|UBE2F_CHICK NEDD8-conjugating enzyme UBE2F OS=Gallus gallus GN=UBE2F PE=2 SV=1
Length = 185
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 46 VRAIQMDGLLWGASK-LAPLAYGINKLQISCVVEDDLVSVDALQESIQDIEDYVSLV 101
+R +DG W ++ L + +G+N L + DD ++++A + ++D ED+ + V
Sbjct: 120 LREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKV 176
>sp|Q969M7|UBE2F_HUMAN NEDD8-conjugating enzyme UBE2F OS=Homo sapiens GN=UBE2F PE=1 SV=1
Length = 185
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 46 VRAIQMDGLLWGASK-LAPLAYGINKLQISCVVEDDLVSVDALQESIQDIEDYVSLV 101
+R +DG W ++ L + +G+N L + DD ++++A + ++D ED+ + V
Sbjct: 120 LREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKV 176
>sp|Q1RMW1|UBE2F_BOVIN NEDD8-conjugating enzyme UBE2F OS=Bos taurus GN=UBE2F PE=2 SV=1
Length = 185
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 46 VRAIQMDGLLWGASK-LAPLAYGINKLQISCVVEDDLVSVDALQESIQDIEDYVSLV 101
+R +DG W ++ L + +G+N L + DD ++++A + ++D ED+ + V
Sbjct: 120 LREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKV 176
>sp|Q9CY34|UB2FA_MOUSE NEDD8-conjugating enzyme UBE2F OS=Mus musculus GN=Ube2f PE=1 SV=1
Length = 185
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 46 VRAIQMDGLLWGASK-LAPLAYGINKLQISCVVEDDLVSVDALQESIQDIEDY 97
+R +DG W ++ L + +G+N L + DD ++++A + ++D ED+
Sbjct: 120 LREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDF 172
>sp|Q5U203|UBE2F_RAT NEDD8-conjugating enzyme UBE2F OS=Rattus norvegicus GN=Ube2f PE=2
SV=2
Length = 185
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 46 VRAIQMDGLLWGASK-LAPLAYGINKLQISCVVEDDLVSVDALQESIQDIEDY 97
+R +DG W ++ L + +G+N L + DD ++++A + ++D ED+
Sbjct: 120 LREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDF 172
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,884,298
Number of Sequences: 539616
Number of extensions: 1317378
Number of successful extensions: 3211
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 3157
Number of HSP's gapped (non-prelim): 67
length of query: 108
length of database: 191,569,459
effective HSP length: 76
effective length of query: 32
effective length of database: 150,558,643
effective search space: 4817876576
effective search space used: 4817876576
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)