Query psy2429
Match_columns 108
No_of_seqs 106 out of 376
Neff 5.0
Searched_HMMs 29240
Date Sat Aug 17 00:43:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2429.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2429hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f60_B Elongation factor EEF1B 100.0 1.4E-42 4.8E-47 238.0 12.4 92 14-107 1-92 (94)
2 1b64_A Elongation factor 1-bet 100.0 2.9E-41 9.9E-46 230.2 10.9 88 20-107 2-89 (91)
3 1gh8_A Translation elongation 100.0 3.4E-39 1.2E-43 219.2 10.1 85 22-107 2-86 (89)
4 2yy3_A Elongation factor 1-bet 100.0 2.1E-38 7.2E-43 216.1 11.3 85 22-107 4-89 (91)
5 2raq_A Conserved protein MTH88 73.4 18 0.00062 24.3 10.0 73 26-105 9-84 (97)
6 3bpd_A Uncharacterized protein 73.2 19 0.00064 24.4 8.9 73 26-105 9-84 (100)
7 2x3d_A SSO6206; unknown functi 66.2 27 0.00091 23.4 9.3 74 26-105 7-83 (96)
8 2jsx_A Protein NAPD; TAT, proo 58.6 25 0.00085 22.9 5.4 68 24-105 8-76 (95)
9 3m05_A Uncharacterized protein 51.0 37 0.0012 23.0 5.4 50 38-93 17-67 (114)
10 3ncq_A Nitrogen regulatory pro 42.7 73 0.0025 21.3 5.9 51 37-93 11-79 (119)
11 3t9z_A GLNK3, nitrogen regulat 42.6 73 0.0025 21.2 6.4 51 37-93 11-79 (118)
12 1wih_A Mitochondrial ribosome 36.4 33 0.0011 22.1 3.2 23 26-49 34-57 (84)
13 2cz4_A Hypothetical protein TT 33.2 1.1E+02 0.0037 20.4 6.0 51 36-92 34-94 (119)
14 3i4p_A Transcriptional regulat 32.0 46 0.0016 22.5 3.5 65 38-104 30-98 (162)
15 3op6_A Uncharacterized protein 31.7 1.1E+02 0.0036 20.5 5.4 31 17-47 39-76 (152)
16 4aff_A Nitrogen regulatory pro 27.3 1.4E+02 0.0046 19.7 6.0 51 37-93 11-79 (116)
17 2e1c_A Putative HTH-type trans 24.0 1.7E+02 0.0057 20.0 5.4 61 41-105 57-120 (171)
18 3mhy_A PII-like protein PZ; PI 23.9 1.5E+02 0.0052 19.2 6.2 52 36-93 10-79 (112)
19 3l7p_A Putative nitrogen regul 23.9 1.6E+02 0.0054 19.3 5.9 51 37-93 13-82 (115)
20 1wdv_A Hypothetical protein AP 21.8 1.5E+02 0.0052 19.4 4.6 30 18-47 39-76 (152)
21 2go8_A Hypothetical protein YQ 21.8 1.3E+02 0.0046 20.1 4.4 41 23-63 13-55 (122)
22 2dbb_A Putative HTH-type trans 21.4 1.7E+02 0.006 18.9 6.1 64 38-105 36-102 (151)
No 1
>1f60_B Elongation factor EEF1BA; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: d.58.12.1 PDB: 1g7c_B* 2b7c_B 2b7b_B 1ije_B* 1ijf_B*
Probab=100.00 E-value=1.4e-42 Score=237.95 Aligned_cols=92 Identities=50% Similarity=0.855 Sum_probs=86.4
Q ss_pred CCCCcccceeeeEEEEEeeCCCccCHHHHHHHHHhhhcCCeeEeeeEeeeeeeeeeeEEEEEEEeCCCcChhHHHHHHHh
Q psy2429 14 SHVEPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDLVSVDALQESIQD 93 (108)
Q Consensus 14 k~~k~~~~aKs~vvl~VkP~d~etDl~~L~~~Ir~i~~eGl~wg~~k~~PIaFGlkkLqi~~vveDd~~~~d~lee~i~~ 93 (108)
|++|| +|||+++|+|||||+||||++|+++||+++++||.||+++++||||||++||++|+|+|++||||+|+|+|++
T Consensus 1 ~~~k~--~~ks~v~l~VkP~d~etDl~~L~~~Vr~i~~~Gl~wg~~k~~piafGlkkL~i~~vveDd~~~tD~lee~i~~ 78 (94)
T 1f60_B 1 KPAKP--AAKSIVTLDVKPWDDETNLEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDDKVSLDDLQQSIEE 78 (94)
T ss_dssp ----C--CCEEEEEEEEEESSTTSCHHHHHHHHHTCCCTTEEEEEEEEEEEETTEEEEEEEEEEETTTCCHHHHHHHHHT
T ss_pred CCCCc--eeeEEEEEEEccCCCCcCHHHHHHHHHHhCcCCcEEEEEEEEEEeeeeEEEEEEEEEECCccChHHHHHHHHh
Confidence 45554 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeEEeeeeC
Q psy2429 94 IEDYVSLVFLKCVP 107 (108)
Q Consensus 94 ~ed~VqSvdI~~~~ 107 (108)
|||+||||||++|+
T Consensus 79 ~ed~VqSvdI~~~~ 92 (94)
T 1f60_B 79 DEDHVQSTDIAAMQ 92 (94)
T ss_dssp CTTTEEEEEEEEEE
T ss_pred ccCceeEEEEEEEE
Confidence 99889999999996
No 2
>1b64_A Elongation factor 1-beta; guanine nucleotide exchange factor, G-protein, translation elongation; NMR {Homo sapiens} SCOP: d.58.12.1
Probab=100.00 E-value=2.9e-41 Score=230.17 Aligned_cols=88 Identities=58% Similarity=0.979 Sum_probs=86.3
Q ss_pred cceeeeEEEEEeeCCCccCHHHHHHHHHhhhcCCeeEeeeEeeeeeeeeeeEEEEEEEeCCCcChhHHHHHHHhcCCCce
Q psy2429 20 LIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDLVSVDALQESIQDIEDYVS 99 (108)
Q Consensus 20 ~~aKs~vvl~VkP~d~etDl~~L~~~Ir~i~~eGl~wg~~k~~PIaFGlkkLqi~~vveDd~~~~d~lee~i~~~ed~Vq 99 (108)
++|||+++|+|||||+||||++|+++||+++++||.||+++++||||||++||++|+|+|+++|+|+|+|+|++|||+||
T Consensus 2 ~~~ks~vvl~VkP~d~etDl~~L~~~Vr~i~~~Gl~wg~~k~~piafGikkL~i~~vveDd~v~tD~lee~i~~~ed~Vq 81 (91)
T 1b64_A 2 LVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQ 81 (91)
T ss_dssp CSSCEEEEEEEEESSTTSCHHHHHHHHHHCCCTTCEEEEEEEEESSSSCEEEEEEEEECTTSSCHHHHHHHHTTCTTTEE
T ss_pred ccceEEEEEEEccCCCCcCHHHHHHHHHHhCcCCcEEEEEEEEEEEeeEEEEEEEEEEECCccChHHHHHHHHhccCcee
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred eEEeeeeC
Q psy2429 100 LVFLKCVP 107 (108)
Q Consensus 100 SvdI~~~~ 107 (108)
||||++|+
T Consensus 82 SvdI~~~~ 89 (91)
T 1b64_A 82 SMDVAAFN 89 (91)
T ss_dssp EEEESCCB
T ss_pred EEEEEEEE
Confidence 99999997
No 3
>1gh8_A Translation elongation factor 1BETA; alpha-beta sandwich, gene regulation, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.58.12.1
Probab=100.00 E-value=3.4e-39 Score=219.16 Aligned_cols=85 Identities=25% Similarity=0.333 Sum_probs=83.3
Q ss_pred eeeeEEEEEeeCCCccCHHHHHHHHHhhhcCCeeEeeeEeeeeeeeeeeEEEEEEEeCCCcChhHHHHHHHhcCCCceeE
Q psy2429 22 AKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDLVSVDALQESIQDIEDYVSLV 101 (108)
Q Consensus 22 aKs~vvl~VkP~d~etDl~~L~~~Ir~i~~eGl~wg~~k~~PIaFGlkkLqi~~vveDd~~~~d~lee~i~~~ed~VqSv 101 (108)
+||+++|+|||||+||||++|+++||+++++||.||+++++||||||+|||++|+|+|+++|||+|||+|++||| ||||
T Consensus 2 ~kv~v~l~V~P~d~etDl~~L~~~vk~~~~~gl~w~~~k~~piafGlk~L~i~~vveD~~~~td~lee~i~~~e~-Vqsv 80 (89)
T 1gh8_A 2 GDVVATIKVMPESPDVDLEALKKEIQERIPEGTELHKIDEEPIAFGLVALNVMVVVGDAEGGTEAAEESLSGIEG-VSNI 80 (89)
T ss_dssp CCEEEEEEEEESSSCCCHHHHHHHHHHHSCTTSEECCCCEEECSSSCEEEEEEEEESSSCGGGGHHHHHHTTSCS-SEEE
T ss_pred ceEEEEEEEccCCCCCCHHHHHHHHHHhccCCcEEeeeeEEEEEcceeeEEEEEEEEcCCcChHHHHHHHhccCC-ccEE
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999985 9999
Q ss_pred EeeeeC
Q psy2429 102 FLKCVP 107 (108)
Q Consensus 102 dI~~~~ 107 (108)
||++|+
T Consensus 81 dv~~~~ 86 (89)
T 1gh8_A 81 EVTDVR 86 (89)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999996
No 4
>2yy3_A Elongation factor 1-beta; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 2.50A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.1e-38 Score=216.11 Aligned_cols=85 Identities=19% Similarity=0.306 Sum_probs=83.4
Q ss_pred eeeeEEEEEeeCCCccCHHHHHHHHHhhhcCCeeEeeeEeeeeeeeeeeEEEEEEEeCCCc-ChhHHHHHHHhcCCCcee
Q psy2429 22 AKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDLV-SVDALQESIQDIEDYVSL 100 (108)
Q Consensus 22 aKs~vvl~VkP~d~etDl~~L~~~Ir~i~~eGl~wg~~k~~PIaFGlkkLqi~~vveDd~~-~~d~lee~i~~~ed~VqS 100 (108)
+||+++|+|||||+||||++|+++||+++++||.||+++++||||||+|||++|+|+|++| |||+|||+|++|| +|||
T Consensus 4 ~kv~v~l~V~P~d~etDl~~L~~~vk~~~~~gl~w~~~k~~pIafGlk~L~i~~vveD~~~~~tD~lee~i~~~e-~VqS 82 (91)
T 2yy3_A 4 FNLVGVIRVMPTDPDVNLDELEEKLKKVIPEKYGLAKVEREPIAFGLVALKFYVLGRDEEGYSFDEVAEKFEEVE-NVES 82 (91)
T ss_dssp CCEEEEEEEEESSTTSCHHHHHHHHHHHSCTTCEEEEEEEEECTTSCEEEEEEEEECSSTTCCHHHHHHHHHHST-TEEE
T ss_pred ceEEEEEEECCCCCCCCHHHHHHHHHHhccCCcEEeeeeEEEEEcceeeEEEEEEEECCCccccHHHHHHHhcCC-CceE
Confidence 6899999999999999999999999999999999999999999999999999999999999 9999999999998 6999
Q ss_pred EEeeeeC
Q psy2429 101 VFLKCVP 107 (108)
Q Consensus 101 vdI~~~~ 107 (108)
|||++|+
T Consensus 83 vdV~~~~ 89 (91)
T 2yy3_A 83 AEVETVS 89 (91)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9999996
No 5
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=73.42 E-value=18 Score=24.31 Aligned_cols=73 Identities=18% Similarity=0.297 Sum_probs=52.4
Q ss_pred EEEEE-eeCCCccCHHHHHHHHHhhhc-CCeeEeeeEeeeeeeeeeeEEEEEEEeCCCcChhHHHHHHHhcCCCceeEE-
Q psy2429 26 IILDV-KPWGDDTDMKEMEKQVRAIQM-DGLLWGASKLAPLAYGINKLQISCVVEDDLVSVDALQESIQDIEDYVSLVF- 102 (108)
Q Consensus 26 vvl~V-kP~d~etDl~~L~~~Ir~i~~-eGl~wg~~k~~PIaFGlkkLqi~~vveDd~~~~d~lee~i~~~ed~VqSvd- 102 (108)
++|+| || -+.++-+|...+-++.. +|.... +. -.-..-..+.++|+-+...-|++++.|+.+..-|-|+|
T Consensus 9 lVLDVlKP--h~p~i~d~A~~l~~~~gV~gVnIt---v~--EvD~eTe~lkitiEG~~id~d~I~~~IE~~Gg~IHSIDE 81 (97)
T 2raq_A 9 IVLDILKP--HEPIIPEYAKYLSELRGVEGVNIT---LM--EIDKETENIKVTIQGNDLDFDEITRAIESYGGSIHSVDE 81 (97)
T ss_dssp EEEEEECC--SCSCHHHHHHHHHHSTTCCEEEEE---EE--EECSSCEEEEEEEECSSCCHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEecCC--CCCCHHHHHHHHHhCCCcceEEEE---EE--EeeccccEEEEEEEecCCCHHHHHHHHHHcCCeEEeeee
Confidence 55666 45 78888999999887643 343322 11 12234556778899888999999999999987799999
Q ss_pred eee
Q psy2429 103 LKC 105 (108)
Q Consensus 103 I~~ 105 (108)
+++
T Consensus 82 Vva 84 (97)
T 2raq_A 82 VVA 84 (97)
T ss_dssp EEE
T ss_pred eee
Confidence 654
No 6
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=73.22 E-value=19 Score=24.38 Aligned_cols=73 Identities=16% Similarity=0.286 Sum_probs=50.8
Q ss_pred EEEEE-eeCCCccCHHHHHHHHHhhhc-CCeeEeeeEeeeeeeeeeeEEEEEEEeCCCcChhHHHHHHHhcCCCceeEE-
Q psy2429 26 IILDV-KPWGDDTDMKEMEKQVRAIQM-DGLLWGASKLAPLAYGINKLQISCVVEDDLVSVDALQESIQDIEDYVSLVF- 102 (108)
Q Consensus 26 vvl~V-kP~d~etDl~~L~~~Ir~i~~-eGl~wg~~k~~PIaFGlkkLqi~~vveDd~~~~d~lee~i~~~ed~VqSvd- 102 (108)
++|+| || -+.++-++...+-++.. +|... .+. -.-..-..+.++||-+...-|++++.|+.+..-|-|+|
T Consensus 9 lVLDVlKP--h~P~ivdlA~~l~~~~gV~gVnI---tV~--EvD~eTe~lkItIEG~dIdfd~I~~~IE~~GgvIHSIDE 81 (100)
T 3bpd_A 9 LVLDVLKP--HEPKTIVFALKLSELENVDGVNI---HLS--EIDQATENIKITILGNNLDYEQIKGVIEDMGGVIHSVDE 81 (100)
T ss_dssp EEEEEEEE--SCSCHHHHHHHHHTSTTEEEEEE---EEE--EECSSEEEEEEEEEEEEECHHHHHHHHHTTTCEEEEEEE
T ss_pred EEEEecCC--CCCCHHHHHHHHHhCCCcceEEE---EEE--EeeccccEEEEEEEecCCCHHHHHHHHHHcCCeEEeeee
Confidence 45555 67 78888889988877642 23322 222 22234456677888778899999999999987799999
Q ss_pred eee
Q psy2429 103 LKC 105 (108)
Q Consensus 103 I~~ 105 (108)
+++
T Consensus 82 Vva 84 (100)
T 3bpd_A 82 VVA 84 (100)
T ss_dssp EEE
T ss_pred eee
Confidence 643
No 7
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}
Probab=66.23 E-value=27 Score=23.42 Aligned_cols=74 Identities=11% Similarity=0.307 Sum_probs=49.3
Q ss_pred EEEEEe-eCCCccCHHHHHHHHHhhhc-CCeeEeeeEeeeeeeeeeeEEEEEEEeCCCcChhHHHHHHHhcCCCceeEE-
Q psy2429 26 IILDVK-PWGDDTDMKEMEKQVRAIQM-DGLLWGASKLAPLAYGINKLQISCVVEDDLVSVDALQESIQDIEDYVSLVF- 102 (108)
Q Consensus 26 vvl~Vk-P~d~etDl~~L~~~Ir~i~~-eGl~wg~~k~~PIaFGlkkLqi~~vveDd~~~~d~lee~i~~~ed~VqSvd- 102 (108)
++|+|. |- -+.++-++...+-++.. +|... .+. -.-..-..+.++|+-+...-|++++.|+.+..-|-|+|
T Consensus 7 lVLDVlKP~-h~P~ivd~A~~l~~~~gV~gVnI---tv~--EvD~eTe~lkItIEG~~idfd~I~~~IE~~Gg~IHSIDE 80 (96)
T 2x3d_A 7 LVLDVLKPI-RGTSIVDLAERISKLDGVEGVNI---SVT--DMDVETMGLMIIIEGTSLNFDDIRKMLEEEGCAIHSIDE 80 (96)
T ss_dssp EEEEEEEES-SSSCHHHHHHHHHTSTTEEEEEE---EEE--EECSSEEEEEEEEEESSCCHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEcccCC-CCCCHHHHHHHHHhCCCcceEEE---EEE--EeeccccEEEEEEEecCCCHHHHHHHHHHcCCeEEeeee
Confidence 566665 41 35667778888776542 22222 111 12234556778888888999999999999987799999
Q ss_pred eee
Q psy2429 103 LKC 105 (108)
Q Consensus 103 I~~ 105 (108)
+++
T Consensus 81 Vva 83 (96)
T 2x3d_A 81 VVS 83 (96)
T ss_dssp EEE
T ss_pred eee
Confidence 654
No 8
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=58.56 E-value=25 Score=22.85 Aligned_cols=68 Identities=24% Similarity=0.279 Sum_probs=40.4
Q ss_pred eeEEEEEeeCCCccCHHHHHHHHHhhhcCCeeEeeeEeeeeeeeeeeEEEEEEEeCC-CcChhHHHHHHHhcCCCceeEE
Q psy2429 24 SNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDD-LVSVDALQESIQDIEDYVSLVF 102 (108)
Q Consensus 24 s~vvl~VkP~d~etDl~~L~~~Ir~i~~eGl~wg~~k~~PIaFGlkkLqi~~vveDd-~~~~d~lee~i~~~ed~VqSvd 102 (108)
|++++..+|.. ++++.+.|+++ +|+.+.....+ - | ++.+++|.+ .....+..+.|+.++ ||-|+.
T Consensus 8 sslvV~~~p~~----~~~V~~~L~~i--pgvEi~~~~~~-~--G----kiVV~iEa~~~~~l~~~i~~I~~i~-GVlst~ 73 (95)
T 2jsx_A 8 CSLVVQAKSER----ISDISTQLNAF--PGCEVAVSDAP-S--G----QLIVVVEAEDSETLIQTIESVRNVE-GVLAVS 73 (95)
T ss_dssp EEEEEEECTTS----HHHHHHHHTTS--TTEEEEEEETT-T--T----EEEEEEEESSHHHHHHHHHHHTTST-TEEEEE
T ss_pred EEEEEEECCCC----HHHHHHHHHCC--CCeEEEEecCC-C--C----CEEEEEEeCCHHHHHHHHHHHhcCC-CccEEe
Confidence 78889998864 66777777665 46654322111 1 1 556666643 122333346677786 899988
Q ss_pred eee
Q psy2429 103 LKC 105 (108)
Q Consensus 103 I~~ 105 (108)
+..
T Consensus 74 lvy 76 (95)
T 2jsx_A 74 LVY 76 (95)
T ss_dssp ESS
T ss_pred EEE
Confidence 753
No 9
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=51.02 E-value=37 Score=23.03 Aligned_cols=50 Identities=12% Similarity=0.140 Sum_probs=30.6
Q ss_pred CHHHHHHHHHhhhcCCeeEeeeEeeeeeee-eeeEEEEEEEeCCCcChhHHHHHHHh
Q psy2429 38 DMKEMEKQVRAIQMDGLLWGASKLAPLAYG-INKLQISCVVEDDLVSVDALQESIQD 93 (108)
Q Consensus 38 Dl~~L~~~Ir~i~~eGl~wg~~k~~PIaFG-lkkLqi~~vveDd~~~~d~lee~i~~ 93 (108)
+++++.+.+.+.--.|.+..... ||| -.+..+.++|+|+ -.|++.+.|.+
T Consensus 17 kld~V~~AL~~~G~~~t~v~~~g----Gf~r~g~~~leivV~De--~Vd~vi~~I~~ 67 (114)
T 3m05_A 17 DANYLSDQFIDQNVRATKLSTTG----GFLQSGNTTFMIGIEEE--RVPEVLEIIKK 67 (114)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEE----TTTTEEEEEEEEEEEGG--GHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEEEec----cccccCCEEEEEEEcHH--HHHHHHHHHHH
Confidence 46666666666544444333222 554 2368888888886 67777777765
No 10
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=42.73 E-value=73 Score=21.25 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=36.0
Q ss_pred cCHHHHHHHHHhhhcCCeeEeeeEeeeeeeee------------------eeEEEEEEEeCCCcChhHHHHHHHh
Q psy2429 37 TDMKEMEKQVRAIQMDGLLWGASKLAPLAYGI------------------NKLQISCVVEDDLVSVDALQESIQD 93 (108)
Q Consensus 37 tDl~~L~~~Ir~i~~eGl~wg~~k~~PIaFGl------------------kkLqi~~vveDd~~~~d~lee~i~~ 93 (108)
-.++++.+.+.+.--.|+++.. =-|||- .+.++.++++|+ -.|++.+.|..
T Consensus 11 ~kl~~Vk~AL~~~G~~g~Tv~~----V~G~G~qkg~~~~yrG~~~~~~~~pK~kieivV~de--~ve~vv~~I~~ 79 (119)
T 3ncq_A 11 EKFPEVKAALEERGFYGMTVTD----VKGRGQQGGMQIQFRGRTMEVTLLPKVKLEIVVKDD--AVEEVIGLIVN 79 (119)
T ss_dssp TTHHHHHHHHHHTTCCCEEEEE----EEEECSTTTTCBCSSSSCBCCCCEEEEEEEEEECGG--GHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCeEEEEe----eEeEcCccCCccccccceeeecccceEEEEEEEcHH--HHHHHHHHHHH
Confidence 4688888888888777777642 124443 458999999986 56777777765
No 11
>3t9z_A GLNK3, nitrogen regulatory protein P-II (GLNB-3); PII-family, AMT3, signaling protein; HET: FLC; 1.82A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ta0_A* 3ta1_A* 3ta2_A* 3o8w_A
Probab=42.55 E-value=73 Score=21.22 Aligned_cols=51 Identities=24% Similarity=0.362 Sum_probs=35.3
Q ss_pred cCHHHHHHHHHhhhcCCeeEeeeEeeeeeee------------------eeeEEEEEEEeCCCcChhHHHHHHHh
Q psy2429 37 TDMKEMEKQVRAIQMDGLLWGASKLAPLAYG------------------INKLQISCVVEDDLVSVDALQESIQD 93 (108)
Q Consensus 37 tDl~~L~~~Ir~i~~eGl~wg~~k~~PIaFG------------------lkkLqi~~vveDd~~~~d~lee~i~~ 93 (108)
-.++++.+.+.+.--.|+++... -||| +.+.++.++++|+ -.|++.+.|..
T Consensus 11 ~kl~~Vk~AL~~~G~~g~Tv~~V----~G~G~qkg~~~~yrG~~~~~~~~pK~~ieivV~de--~ve~Vv~~I~~ 79 (118)
T 3t9z_A 11 EKLECVKKALEERGFVGMTVTEV----KGRGEQKGIRLQFRGREVEVDLLQKTKVEVVVSDD--AVDEVVEAIVS 79 (118)
T ss_dssp GGHHHHHHHHHHTTCCCEEEEEE----EEEC-----------------CEEEEEEEEEECGG--GHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCceEEEEee----EeecCcCCCccccccceeeecccceEEEEEEEChH--HHHHHHHHHHH
Confidence 46888888888877777776421 1333 3458889999886 46777777765
No 12
>1wih_A Mitochondrial ribosome recycling factor; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.67.3.1
Probab=36.41 E-value=33 Score=22.10 Aligned_cols=23 Identities=13% Similarity=-0.009 Sum_probs=18.9
Q ss_pred EEEEEeeCC-CccCHHHHHHHHHhh
Q psy2429 26 IILDVKPWG-DDTDMKEMEKQVRAI 49 (108)
Q Consensus 26 vvl~VkP~d-~etDl~~L~~~Ir~i 49 (108)
=.|-|.||| + .-+..+++.|++.
T Consensus 34 r~l~I~p~D~~-~~~~~IekAI~~S 57 (84)
T 1wih_A 34 QVILVNMASFP-ECTAAAIKAIRES 57 (84)
T ss_dssp TEEEEECTTCT-TSHHHHHHHHHTT
T ss_pred CEEEEEecccH-HHHHHHHHHHHHC
Confidence 368899988 6 8899999998864
No 13
>2cz4_A Hypothetical protein TTHA0516; conserved hypothetical protein, PII-like signaling protein, structural genomics, NPPSFA; 1.93A {Thermus thermophilus} SCOP: d.58.5.1
Probab=33.18 E-value=1.1e+02 Score=20.40 Aligned_cols=51 Identities=12% Similarity=0.225 Sum_probs=36.1
Q ss_pred ccCHHHHHHHHHhhhcCCeeEeeeEeeeeeeee----------eeEEEEEEEeCCCcChhHHHHHHH
Q psy2429 36 DTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGI----------NKLQISCVVEDDLVSVDALQESIQ 92 (108)
Q Consensus 36 etDl~~L~~~Ir~i~~eGl~wg~~k~~PIaFGl----------kkLqi~~vveDd~~~~d~lee~i~ 92 (108)
.--++.+.+.+++.-..|++... =-|||- .++++.++++|+ -.|.+-+.|.
T Consensus 34 ~~k~e~V~~aL~~~Gi~G~TV~~----V~G~G~q~~~t~~~~g~kv~IeiVv~de--~ve~vv~~I~ 94 (119)
T 2cz4_A 34 SLLEKRLVEEVKRLGAKGYTITP----ARGEGSRGIRSVDWEGQNIRLETIVSEE--VALRILQRLQ 94 (119)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEE----EBCTTCCCTTCSCSTTCEEEEEEEECHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcEEEcC----CEEecCCCCccccccCCCEEEEEEECHH--HHHHHHHHHH
Confidence 45678888888888778888632 126665 457888888775 4677777776
No 14
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=32.04 E-value=46 Score=22.52 Aligned_cols=65 Identities=8% Similarity=0.136 Sum_probs=41.7
Q ss_pred CHHHHHHHHHhhhcCCeeEee-e--EeeeeeeeeeeEEEEEEEeCCC-cChhHHHHHHHhcCCCceeEEee
Q psy2429 38 DMKEMEKQVRAIQMDGLLWGA-S--KLAPLAYGINKLQISCVVEDDL-VSVDALQESIQDIEDYVSLVFLK 104 (108)
Q Consensus 38 Dl~~L~~~Ir~i~~eGl~wg~-~--k~~PIaFGlkkLqi~~vveDd~-~~~d~lee~i~~~ed~VqSvdI~ 104 (108)
.-..+...++.-...|+..+- . ...-+||++.++ +.+.+.... ...+++.+.+.+++ +|.+|-..
T Consensus 30 s~~tv~~rl~~L~~~g~i~~~~a~~~~~~lG~~~~a~-v~v~v~~~~~~~~~~~~~~l~~~p-eV~~~~~v 98 (162)
T 3i4p_A 30 STTPCWRRIQKMEEDGVIRRRVALLDPVKVNTKVTVF-VSIRTASHSIEWLKRFSEVVSEFP-EVVEFYRM 98 (162)
T ss_dssp CHHHHHHHHHHHHHTTSSCCCCCCCCTTTTTCCEEEE-EEEECCSCCHHHHHHHHHHHHHCT-TEEEEEEC
T ss_pred CHHHHHHHHHHHHHCCCeeeceeeeCHHHhcCcEEEE-EEEEEcCCChHHHHHHHHHHhcCC-CEEEeeec
Confidence 345566777777888887642 2 334457776654 333343321 34789999999997 69988754
No 15
>3op6_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 2.00A {Legionella pneumophila subsp}
Probab=31.74 E-value=1.1e+02 Score=20.54 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=25.0
Q ss_pred CcccceeeeE-------EEEEeeCCCccCHHHHHHHHH
Q psy2429 17 EPALIAKSNI-------ILDVKPWGDDTDMKEMEKQVR 47 (108)
Q Consensus 17 k~~~~aKs~v-------vl~VkP~d~etDl~~L~~~Ir 47 (108)
.+..++|+.+ ++=+.|-|.++|+.+|.+.+.
T Consensus 39 ~~~~~~Ktlv~~~~~~~~lvvv~gd~~ld~~kl~~~lg 76 (152)
T 3op6_A 39 SGKQLAKTVIIKMDGRLAMVVLPASDHITFMKLKEAIG 76 (152)
T ss_dssp CSSCCEEEEEEEETTEEEEEEEETTCCCCHHHHHHHHS
T ss_pred ChhheEEEEEEEECCeEEEEEECCCCeECHHHHHHHhC
Confidence 3456778876 467899999999999999875
No 16
>4aff_A Nitrogen regulatory protein P-II; signaling protein; HET: ATP FLC; 1.05A {Synechococcus elongatus} SCOP: d.58.5.1 PDB: 2xun_A* 2xul_A* 2xzw_A* 2xbp_A* 2v5h_G* 2jj4_D* 2xg8_A 1qy7_A 3n5b_A* 1ul3_A
Probab=27.27 E-value=1.4e+02 Score=19.71 Aligned_cols=51 Identities=24% Similarity=0.363 Sum_probs=34.8
Q ss_pred cCHHHHHHHHHhhhcCCeeEeeeEeeeeeeee------------------eeEEEEEEEeCCCcChhHHHHHHHh
Q psy2429 37 TDMKEMEKQVRAIQMDGLLWGASKLAPLAYGI------------------NKLQISCVVEDDLVSVDALQESIQD 93 (108)
Q Consensus 37 tDl~~L~~~Ir~i~~eGl~wg~~k~~PIaFGl------------------kkLqi~~vveDd~~~~d~lee~i~~ 93 (108)
-+++++.+.+.+.--.|+++... -|||- .+.++.++++|+ -.|++.+.|..
T Consensus 11 ~kl~~vk~AL~~~G~~g~Tv~~V----~G~G~q~g~~~~yrG~~~~~~~~pK~kieivV~d~--~ve~vv~~I~~ 79 (116)
T 4aff_A 11 FKLDEVKIALVNAGIVGMTVSEV----RGFGRQKGQTERYRGSEYTVEFLQKLKLEIVVEDA--QVDTVIDKIVA 79 (116)
T ss_dssp GGHHHHHHHHHHTTCCCCEEEEE----EECCCCC------CCCSSCCCCEEEEEEEEEECGG--GHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCeEEEEee----EeEcccCCCccccccceeeecccceEEEEEEEcHH--HHHHHHHHHHH
Confidence 46788888888877677765421 13333 458889999886 46777777654
No 17
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=24.01 E-value=1.7e+02 Score=20.02 Aligned_cols=61 Identities=11% Similarity=0.224 Sum_probs=38.9
Q ss_pred HHHHHHHhhhcCCeeEe-e--eEeeeeeeeeeeEEEEEEEeCCCcChhHHHHHHHhcCCCceeEEeee
Q psy2429 41 EMEKQVRAIQMDGLLWG-A--SKLAPLAYGINKLQISCVVEDDLVSVDALQESIQDIEDYVSLVFLKC 105 (108)
Q Consensus 41 ~L~~~Ir~i~~eGl~wg-~--~k~~PIaFGlkkLqi~~vveDd~~~~d~lee~i~~~ed~VqSvdI~~ 105 (108)
.+...++.....|+.-+ . .....+||++.++ +.+.++. ...+++.+.|.+++ +|..|-..+
T Consensus 57 tv~~rl~~L~~~G~I~~~~a~vd~~~~G~~~~a~-v~v~~~~--~~~~~v~~~l~~~p-eV~~~~~vt 120 (171)
T 2e1c_A 57 TIHERIRKLRESGVIKKFTAIIDPEALGYSMLAF-ILVKVKA--GKYSEVASNLAKYP-EIVEVYETT 120 (171)
T ss_dssp HHHHHHHHHHHTTSSCCCCCCCCGGGGTCCEEEE-EEEEECT--TCHHHHHHHHHTST-TEEEEEECS
T ss_pred HHHHHHHHHHHCCCeEeeeEEECHHHcCCCEEEE-EEEEECc--chHHHHHHHHhcCc-CeEEEEEee
Confidence 34445555566677533 1 2233467877765 4445553 47799999999997 698887653
No 18
>3mhy_A PII-like protein PZ; PII protein, alpha-beta protein, homotrimer, signaling prote; HET: PG6 ATP AKG MES; 1.40A {Azospirillum brasilense} SCOP: d.58.5.1 PDB: 3o5t_B*
Probab=23.92 E-value=1.5e+02 Score=19.15 Aligned_cols=52 Identities=21% Similarity=0.451 Sum_probs=36.0
Q ss_pred ccCHHHHHHHHHhhhcCCeeEeeeEeeeeeee------------------eeeEEEEEEEeCCCcChhHHHHHHHh
Q psy2429 36 DTDMKEMEKQVRAIQMDGLLWGASKLAPLAYG------------------INKLQISCVVEDDLVSVDALQESIQD 93 (108)
Q Consensus 36 etDl~~L~~~Ir~i~~eGl~wg~~k~~PIaFG------------------lkkLqi~~vveDd~~~~d~lee~i~~ 93 (108)
.-.++++.+.+.+.--.|+++... -||| +.+.++.++++|+ -.|.+.+.|..
T Consensus 10 ~~kl~~vk~AL~~~G~~g~Tv~~v----~G~G~q~g~~~~yrG~~~~~~~~pK~kieivV~d~--~v~~vv~~I~~ 79 (112)
T 3mhy_A 10 PFKLDEVREALTSLGIQGLTVSEV----KGFGRQKGQTEIYRGAEYSVSFLPKVKVEVAVSDD--QYEQVVEAIQK 79 (112)
T ss_dssp GGGHHHHHHHHHHHTCCCEEEEEE----EEECTTTTCC---------CCCEEEEEEEEEECTT--THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCeEEEEEE----EeEccccCCcceeccceeeecccceEEEEEEEchH--HHHHHHHHHHH
Confidence 346888888888887677764321 1333 3568999999987 56777777765
No 19
>3l7p_A Putative nitrogen regulatory protein PII; SMU_1 transcription, transcription regulation; 2.00A {Streptococcus mutans} SCOP: d.58.5.1
Probab=23.91 E-value=1.6e+02 Score=19.33 Aligned_cols=51 Identities=16% Similarity=0.428 Sum_probs=34.5
Q ss_pred cCHHHHHHHHHhhhc-CCeeEeeeEeeeeeee------------------eeeEEEEEEEeCCCcChhHHHHHHHh
Q psy2429 37 TDMKEMEKQVRAIQM-DGLLWGASKLAPLAYG------------------INKLQISCVVEDDLVSVDALQESIQD 93 (108)
Q Consensus 37 tDl~~L~~~Ir~i~~-eGl~wg~~k~~PIaFG------------------lkkLqi~~vveDd~~~~d~lee~i~~ 93 (108)
-.++++.+.+.++-- .|+++... -||| +.+.++.++++|+ -.|.+.+.|..
T Consensus 13 ~kl~~Vk~AL~~~G~d~g~Tv~~V----~G~G~q~g~~~~yrG~~~~~~~~pk~kieivV~d~--~ve~vv~~I~~ 82 (115)
T 3l7p_A 13 DKLEDLKAALVQSGFIKGMTISQV----LGFGNQRGYTEYVRGQKITPTLLAKVKVEIVAHDA--AVEEMITTISQ 82 (115)
T ss_dssp GGHHHHHHHHHHHTCGGGEEEEEE----EEEC----------------CEEEEEEEEEEECGG--GHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCccEEEEEE----EeEcccCCCceeeccceeeecccceEEEEEEEcHH--HHHHHHHHHHH
Confidence 357888888888766 67765421 1222 4468899999886 56777777655
No 20
>1wdv_A Hypothetical protein APE2540; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.70A {Aeropyrum pernix} SCOP: d.116.1.1
Probab=21.82 E-value=1.5e+02 Score=19.38 Aligned_cols=30 Identities=27% Similarity=0.370 Sum_probs=23.3
Q ss_pred cccceeeeEEEE--------EeeCCCccCHHHHHHHHH
Q psy2429 18 PALIAKSNIILD--------VKPWGDDTDMKEMEKQVR 47 (108)
Q Consensus 18 ~~~~aKs~vvl~--------VkP~d~etDl~~L~~~Ir 47 (108)
+..++|+.+.-. +.|-|.++|+.++.+.+.
T Consensus 39 ~~~~~Ktlv~~~~~~~~~l~vv~gd~~ld~~kl~~~~g 76 (152)
T 1wdv_A 39 ESEIVKTLIVLDNAGGVYAVVIPGDKRLNINSMKELAG 76 (152)
T ss_dssp GGGBEEEEEEEETTSCEEEEEEETTCCBCHHHHHHHHT
T ss_pred HHHeEEEEEEEeCCCcEEEEEEECchhhCHHHHHHHHC
Confidence 455667766554 899999999999998774
No 21
>2go8_A Hypothetical protein YQJZ; SR435, protein structure, structural genomics, PSI, protein initiative, northeast structural genomics consortium; 2.30A {Bacillus subtilis} SCOP: d.58.4.5
Probab=21.79 E-value=1.3e+02 Score=20.09 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=26.3
Q ss_pred eeeEEEEEeeCCCccCHHHHHHHHHh--hhcCCeeEeeeEeee
Q psy2429 23 KSNIILDVKPWGDDTDMKEMEKQVRA--IQMDGLLWGASKLAP 63 (108)
Q Consensus 23 Ks~vvl~VkP~d~etDl~~L~~~Ir~--i~~eGl~wg~~k~~P 63 (108)
--+|+|.+.|...+-...+|.+.++. ...+|+....+-..|
T Consensus 13 m~aViFe~~~~~~~~~Y~~la~~~~~la~~qpGFI~~Es~~~~ 55 (122)
T 2go8_A 13 YYAVIFSSVKSENDTGYGETAERMVSLAADQPGFLGVESVREA 55 (122)
T ss_dssp EEEEEEEEECC------CHHHHHHHHHHHHSTTEEEEEEEECT
T ss_pred EEEEEEEEEeCCchhHHHHHHHHHHHHHhhCCCceEEEEEEcC
Confidence 46789999999988888899999986 366888766653333
No 22
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=21.45 E-value=1.7e+02 Score=18.92 Aligned_cols=64 Identities=17% Similarity=0.240 Sum_probs=40.0
Q ss_pred CHHHHHHHHHhhhcCCeeEeee-E--eeeeeeeeeeEEEEEEEeCCCcChhHHHHHHHhcCCCceeEEeee
Q psy2429 38 DMKEMEKQVRAIQMDGLLWGAS-K--LAPLAYGINKLQISCVVEDDLVSVDALQESIQDIEDYVSLVFLKC 105 (108)
Q Consensus 38 Dl~~L~~~Ir~i~~eGl~wg~~-k--~~PIaFGlkkLqi~~vveDd~~~~d~lee~i~~~ed~VqSvdI~~ 105 (108)
.-..+...++.-...|+..+-. . ...+||++.++. .+.=+....+++.+.+..++ +|.+|...+
T Consensus 36 s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~a~v---~v~~~~~~~~~~~~~l~~~p-eV~~~~~vt 102 (151)
T 2dbb_A 36 TRQRIARRIDKLKKLGIIRKFTIIPDIDKLGYMYAIVL---IKSKVPSDADKVISEISDIE-YVKSVEKGV 102 (151)
T ss_dssp CHHHHHHHHHHHHHHTSEEEEEEEECTGGGTEEEEEEE---EEESSHHHHHHHHHHHTTCT-TEEEEEEEE
T ss_pred CHHHHHHHHHHHHHCCCEEEEEecCChHHhCCCEEEEE---EEEeCCCCHHHHHHHHHcCC-CeEEEeEec
Confidence 3445566677777778876532 2 233566655443 23222345788999999997 698887665
Done!