RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2429
         (108 letters)



>d1f60b_ d.58.12.1 (B:) Guanine nucleotide exchange factor (GEF)
           domain from elongation factor-1 beta {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 90

 Score =  120 bits (302), Expect = 1e-37
 Identities = 45/81 (55%), Positives = 62/81 (76%)

Query: 21  IAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDD 80
            AKS + LDVKPW D+T+++EM   V+AI+M+GL WGA +  P+ +GI KLQI+CVVEDD
Sbjct: 2   AAKSIVTLDVKPWDDETNLEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDD 61

Query: 81  LVSVDALQESIQDIEDYVSLV 101
            VS+D LQ+SI++ ED+V   
Sbjct: 62  KVSLDDLQQSIEEDEDHVQST 82


>d1b64a_ d.58.12.1 (A:) Guanine nucleotide exchange factor (GEF)
           domain from elongation factor-1 beta {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 91

 Score =  117 bits (294), Expect = 2e-36
 Identities = 51/82 (62%), Positives = 64/82 (78%)

Query: 20  LIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVED 79
           L+AKS+I+LDVKPW D+TDM ++E+ VR+IQ DGL+WG+SKL P+ YGI KLQI CVVED
Sbjct: 2   LVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVED 61

Query: 80  DLVSVDALQESIQDIEDYVSLV 101
           D V  D L+E I   EDYV  +
Sbjct: 62  DKVGTDMLEEQITAFEDYVQSM 83


>d1gh8a_ d.58.12.1 (A:) aEF-1beta {Archaeon Methanobacterium
          thermoautotrophicum [TaxId: 145262]}
          Length = 89

 Score =  103 bits (259), Expect = 4e-31
 Identities = 18/75 (24%), Positives = 34/75 (45%)

Query: 22 AKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDL 81
                + V P   D D++ ++K+++    +G         P+A+G+  L +  VV D  
Sbjct: 2  GDVVATIKVMPESPDVDLEALKKEIQERIPEGTELHKIDEEPIAFGLVALNVMVVVGDAE 61

Query: 82 VSVDALQESIQDIED 96
             +A +ES+  IE 
Sbjct: 62 GGTEAAEESLSGIEG 76


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0618    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 377,308
Number of extensions: 14371
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 6
Length of query: 108
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 40
Effective length of database: 1,473,956
Effective search space: 58958240
Effective search space used: 58958240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)