BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2439
(146 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VEU6|GCYDA_DROME Soluble guanylate cyclase 89Da OS=Drosophila melanogaster
GN=Gyc-89Da PE=1 SV=2
Length = 667
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 35/68 (51%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 2 EYGDDVWLKVLKKAGCKVSCFNTHHIYPDIYMPDLATACASVIEGDLTSEYFMEFFGKCF 61
EYG D+W KV CK + F TH IYPD MPD+A A S G+ + ++ M FFG+CF
Sbjct: 16 EYGVDIWRKVCHIIDCKHNSFKTHQIYPDKLMPDIAEAL-SACTGE-SFDFCMNFFGRCF 73
Query: 62 VRYFSNLG 69
VR+FSN G
Sbjct: 74 VRFFSNFG 81
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/67 (50%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Query: 80 EYGDDVWLKVLKKAGCKVSCFNTHHIYPDIYMPDLATACASVIEGDLTSEYFMEFFGKCF 139
EYG D+W KV CK + F TH IYPD MPD+A A S G+ + ++ M FFG+CF
Sbjct: 16 EYGVDIWRKVCHIIDCKHNSFKTHQIYPDKLMPDIAEAL-SACTGE-SFDFCMNFFGRCF 73
Query: 140 VRYFSNL 146
VR+FSN
Sbjct: 74 VRFFSNF 80
>sp|Q9VEU5|GCYDB_DROME Soluble guanylate cyclase 89Db OS=Drosophila melanogaster
GN=Gyc-89Db PE=1 SV=1
Length = 669
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Query: 2 EYGDDVWLKVLKKAGCKVSCFNTHHIYPDIYMPDLATACASVIEGDLTSEYF---MEFFG 58
EYG + W KV + CK F TH IYPD MPD A A ++ T E F M FFG
Sbjct: 16 EYGMETWRKVCQIVDCKHQSFKTHQIYPDKLMPDFAAALSAS-----TGESFDFCMNFFG 70
Query: 59 KCFVRYFSNLG 69
+CFVR+FSN G
Sbjct: 71 RCFVRFFSNFG 81
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Query: 78 KLEYGDDVWLKVLKKAGCKVSCFNTHHIYPDIYMPDLATACASVIEGDLTSEYF---MEF 134
+ EYG + W KV + CK F TH IYPD MPD A A ++ T E F M F
Sbjct: 14 QQEYGMETWRKVCQIVDCKHQSFKTHQIYPDKLMPDFAAALSAS-----TGESFDFCMNF 68
Query: 135 FGKCFVRYFSN 145
FG+CFVR+FSN
Sbjct: 69 FGRCFVRFFSN 79
>sp|Q8INF0|GCY8E_DROME Soluble guanylate cyclase 88E OS=Drosophila melanogaster
GN=Gyc88E PE=1 SV=3
Length = 947
Score = 37.0 bits (84), Expect = 0.044, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 3 YGDDVWLKVLKKAGCKVSCFNTHHIYPDIYMPDLATACASVIEGDLTSEYFMEFFGKCFV 62
YG++ W + ++AG F+ H +YP+ + LA V+ ++ FM+ G FV
Sbjct: 17 YGEEKWEDIRRQAGIDSPSFSVHQVYPENLLQKLAKKAQQVL--GVSERDFMDQMGVYFV 74
Query: 63 RYFSNLG 69
+ G
Sbjct: 75 GFVGQYG 81
Score = 35.8 bits (81), Expect = 0.10, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 81 YGDDVWLKVLKKAGCKVSCFNTHHIYPDIYMPDLATACASVI---EGDLTSE---YFMEF 134
YG++ W + ++AG F+ H +YP+ + LA V+ E D + YF+ F
Sbjct: 17 YGEEKWEDIRRQAGIDSPSFSVHQVYPENLLQKLAKKAQQVLGVSERDFMDQMGVYFVGF 76
Query: 135 FGK 137
G+
Sbjct: 77 VGQ 79
>sp|P92006|GCY34_CAEEL Soluble guanylate cyclase gcy-34 OS=Caenorhabditis elegans
GN=gcy-34 PE=2 SV=1
Length = 686
Score = 33.5 bits (75), Expect = 0.47, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 2 EYGDDVWLKVLKKAGCKVSCFN-THHIYPDIYMPDLATACASVIEGDLTSEYFMEFFGKC 60
+YG+DVWL+VL+++G + N +H Y D L + + V++ +T + E +G
Sbjct: 16 KYGEDVWLQVLERSGFENGKENIVNHYYSDTDTYVLVDSVSIVLK--VTKDQIWEMYGGF 73
Query: 61 FVRYFSNLG 69
+ Y +G
Sbjct: 74 LITYSMEIG 82
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 80 EYGDDVWLKVLKKAGCKVSCFN-THHIYPDIYMPDLATACASVIEGDLTSEYFMEFFGKC 138
+YG+DVWL+VL+++G + N +H Y D L + + V++ +T + E +G
Sbjct: 16 KYGEDVWLQVLERSGFENGKENIVNHYYSDTDTYVLVDSVSIVLK--VTKDQIWEMYGGF 73
Query: 139 FVRY 142
+ Y
Sbjct: 74 LITY 77
>sp|Q6DNF4|GCY36_CAEEL Soluble guanylate cyclase gcy-36 OS=Caenorhabditis elegans
GN=gcy-36 PE=1 SV=1
Length = 675
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 3 YGDDVWLKVLKKAGCKVSCFN-THHIYPDIYMPDLATACASVIEGDLTSEYFMEFFGKCF 61
YG+ W KVL++AG + N +H Y D L A + +++ +T E E +G
Sbjct: 17 YGEAFWSKVLERAGFEAGKENIINHYYSDADTFSLVDAVSVILK--VTREQVWEMYGCFL 74
Query: 62 VRYFSNLG 69
++Y G
Sbjct: 75 IQYTMETG 82
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 81 YGDDVWLKVLKKAGCKVSCFN-THHIYPDIYMPDLATACASVIEGDLTSEYFMEFFGKCF 139
YG+ W KVL++AG + N +H Y D L A + +++ +T E E +G
Sbjct: 17 YGEAFWSKVLERAGFEAGKENIINHYYSDADTFSLVDAVSVILK--VTREQVWEMYGCFL 74
Query: 140 VRY 142
++Y
Sbjct: 75 IQY 77
>sp|P39652|DEXT_ARTSD Dextranase OS=Arthrobacter sp. (strain CB-8) PE=1 SV=1
Length = 640
Score = 29.6 bits (65), Expect = 7.3, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 72 LAIAFQKLEYGDDVWLKVLKKAGCKVSCFNTHHIYPDIY-----MPDLATACASVIEGDL 126
L +++ EY DVW++V + G +S + I P Y + D T V D
Sbjct: 134 LTMSWSSFEYAKDVWVEVSLRTGQTISSADQVQIRPSSYNFEKQLVDADTVRIKVPYSDA 193
Query: 127 TSEYFMEFFGKCFVRY 142
+ +EF + + Y
Sbjct: 194 GYRFSVEFEPQLYTAY 209
>sp|P70744|DEXT_ARTGO Dextranase OS=Arthrobacter globiformis PE=3 SV=1
Length = 640
Score = 29.6 bits (65), Expect = 7.3, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 72 LAIAFQKLEYGDDVWLKVLKKAGCKVSCFNTHHIYPDIY-----MPDLATACASVIEGDL 126
L +++ EY DVW++V + G +S + I P Y + D T V D
Sbjct: 134 LTMSWSSFEYAKDVWVEVSLRTGQTISSADQVQIRPSSYNFEKQLVDADTVRIKVPYSDA 193
Query: 127 TSEYFMEFFGKCFVRY 142
+ +EF + + Y
Sbjct: 194 GYRFSVEFEPQLYTAY 209
>sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820
OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1
Length = 637
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 13/108 (12%)
Query: 50 SEYFMEFFGKCF--VRYFSNLGIILAIAFQ--KLEYGDDVWLKVLKKAGCKVSCFN---- 101
S++F E + V + L ++L + KLE DVW + K C+++ +
Sbjct: 482 SDHFKEMVTRGLFSVSQYGTLKLLLNTVLKDKKLEMAKDVWSCITSKGACELNVLSWTIW 541
Query: 102 THHIYPDIYMPDLATACASVIEGDL-----TSEYFMEFFGKCFVRYFS 144
H ++ Y + + C +IE D T M+ K + R F+
Sbjct: 542 IHALFSKGYEKEACSYCIEMIEMDFMPQPDTFAKLMKGLKKLYNREFA 589
>sp|Q6DNF7|GCY32_CAEEL Soluble guanylate cyclase gcy-32 OS=Caenorhabditis elegans
GN=gcy-32 PE=2 SV=1
Length = 684
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 3 YGDDVWLKVLKKAGCKVSCFN-THHIYPDIYMPDLATACASVIEGDLTSEYFMEFFGKCF 61
YG+D W +VL+++G + N +H Y D L + + V++ +T + E +G
Sbjct: 17 YGEDTWTQVLERSGFESGKENIMNHYYSDTDTYVLVDSVSLVLK--VTKDQVWEMYGGFL 74
Query: 62 VRYFSNLG 69
+ Y +G
Sbjct: 75 ITYSMEIG 82
>sp|P47312|TKT_MYCGE Transketolase OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 /
NCTC 10195) GN=tkt PE=3 SV=1
Length = 648
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 10 KVLKKAGCKVSCFNTHHI-----YPDIYMPDLATACASVIEGDLTSEYFMEFFGKCFVRY 64
KVL K KV + +I + Y+ L A +S+I + +S Y E+F CF +Y
Sbjct: 552 KVLTKQNVKVRILSVPNITLLLKQDEKYLKSLFDANSSLITIEASSSY--EWF--CFKKY 607
Query: 65 FSNLGIILAIAFQKLEYGDDVW 86
N + A +F + + GD V+
Sbjct: 608 VKNHAHLGAFSFGESDDGDKVY 629
>sp|A5UJV0|AROA_METS3 Probable 3-phosphoshikimate 1-carboxyvinyltransferase
OS=Methanobrevibacter smithii (strain PS / ATCC 35061 /
DSM 861) GN=aroA PE=3 SV=1
Length = 438
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 39 ACASVIEGDLTSEYFMEFFGKCFVRYFSNLGIILAIAFQKLEYGDDVWLKVLKKAGCKVS 98
+C V+EGD +S ++ V + IL + F+ + GD + L +LKK G K+
Sbjct: 244 SCDYVVEGDYSSASYL----LAAVAIYGGNAKILNL-FKDSKQGDKLILNILKKMGAKIE 298
Query: 99 CFN 101
F+
Sbjct: 299 IFD 301
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.144 0.472
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,337,827
Number of Sequences: 539616
Number of extensions: 2091176
Number of successful extensions: 5141
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 5120
Number of HSP's gapped (non-prelim): 28
length of query: 146
length of database: 191,569,459
effective HSP length: 106
effective length of query: 40
effective length of database: 134,370,163
effective search space: 5374806520
effective search space used: 5374806520
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)