Query psy2439
Match_columns 146
No_of_seqs 176 out of 508
Neff 7.5
Searched_HMMs 29240
Date Sat Aug 17 00:57:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2439.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2439hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kii_A Putative uncharacterize 99.9 4.2E-23 1.4E-27 154.4 1.9 100 1-117 15-121 (181)
2 3tfg_A ALR2278 protein; heme-b 99.9 2.8E-23 9.4E-28 156.3 -0.7 102 1-117 15-123 (189)
3 3sj5_A Methyl-accepting chemot 99.8 5.2E-22 1.8E-26 149.3 -0.5 104 1-117 15-120 (188)
4 2kii_A Putative uncharacterize 99.7 1.3E-17 4.4E-22 124.5 8.6 77 67-145 1-79 (181)
5 3sj5_A Methyl-accepting chemot 99.7 1.4E-17 4.7E-22 125.1 7.4 77 67-145 1-80 (188)
6 3tfg_A ALR2278 protein; heme-b 99.7 1.9E-17 6.4E-22 124.4 7.6 76 67-144 1-79 (189)
7 3f6w_A XRE-family like protein 62.8 6.9 0.00024 23.5 3.1 49 10-60 32-80 (83)
8 3qq6_A HTH-type transcriptiona 51.5 12 0.0004 22.5 2.7 45 9-55 27-72 (78)
9 2k9q_A Uncharacterized protein 50.5 19 0.00066 21.1 3.6 45 10-56 20-64 (77)
10 2r1j_L Repressor protein C2; p 46.9 15 0.00051 20.6 2.6 45 9-55 22-66 (68)
11 2cpg_A REPA protein, transcrip 45.4 21 0.00072 18.9 2.9 29 27-57 7-35 (45)
12 3s8q_A R-M controller protein; 44.6 19 0.00064 21.4 2.9 47 10-58 29-75 (82)
13 2k9i_A Plasmid PRN1, complete 44.4 29 0.001 19.1 3.6 30 26-57 13-42 (55)
14 2b5a_A C.BCLI; helix-turn-heli 43.0 21 0.0007 20.7 2.9 23 32-56 50-72 (77)
15 2xi8_A Putative transcription 42.0 12 0.00041 20.9 1.6 44 9-54 18-61 (66)
16 3b7h_A Prophage LP1 protein 11 40.9 16 0.00055 21.3 2.1 42 9-54 24-68 (78)
17 1wi3_A DNA-binding protein SAT 40.0 22 0.00075 21.9 2.6 32 21-57 25-56 (71)
18 3g5g_A Regulatory protein; tra 39.9 25 0.00086 22.2 3.1 48 10-59 46-93 (99)
19 1adr_A P22 C2 repressor; trans 39.0 23 0.0008 20.3 2.7 22 33-56 46-67 (76)
20 2gpe_A Bifunctional protein PU 38.8 29 0.001 19.1 2.9 28 30-59 11-38 (52)
21 2ay0_A Bifunctional PUTA prote 37.6 43 0.0015 19.3 3.6 27 30-58 11-37 (58)
22 2p0u_A Stilbenecarboxylate syn 35.7 39 0.0013 27.0 4.2 49 5-61 298-356 (413)
23 2wus_R RODZ, putative uncharac 34.9 38 0.0013 22.1 3.4 27 33-61 54-80 (112)
24 1dw9_A Cyanate lyase; cyanate 34.3 16 0.00055 26.0 1.5 47 7-55 28-74 (156)
25 3f52_A CLP gene regulator (CLG 33.0 33 0.0011 21.9 2.8 23 32-56 68-90 (117)
26 4b4c_A Chromodomain-helicase-D 32.8 8.5 0.00029 28.0 -0.2 38 1-38 23-62 (211)
27 2lx0_A Membrane fusion protein 31.9 28 0.00097 17.5 1.7 14 132-145 18-31 (32)
28 1y7y_A C.AHDI; helix-turn-heli 31.5 12 0.00039 21.6 0.3 20 33-54 54-73 (74)
29 1lmb_3 Protein (lambda repress 31.0 24 0.00083 21.3 1.8 29 33-63 58-86 (92)
30 1i88_A CHS2, chalcone synthase 30.8 59 0.002 25.6 4.5 48 6-61 281-338 (389)
31 1xrx_A SEQA protein; protein f 30.3 16 0.00056 20.7 0.8 25 30-56 7-31 (50)
32 2ofy_A Putative XRE-family tra 29.8 38 0.0013 20.1 2.6 43 9-55 31-76 (86)
33 3omt_A Uncharacterized protein 29.4 13 0.00044 21.7 0.2 44 9-54 25-68 (73)
34 2kpj_A SOS-response transcript 28.8 32 0.0011 21.1 2.1 19 34-54 51-69 (94)
35 3vk0_A NHTF, transcriptional r 28.8 33 0.0011 21.9 2.3 50 10-61 39-88 (114)
36 1xes_A Dihydropinosylvin synth 27.9 43 0.0015 26.8 3.2 48 6-61 304-361 (413)
37 1k8b_A EIF-2-beta, probable tr 27.6 53 0.0018 18.7 2.7 22 38-61 15-36 (52)
38 3awk_A Chalcone synthase-like 27.5 65 0.0022 25.6 4.2 48 6-61 294-351 (402)
39 3kxa_A NGO0477 protein, putati 27.2 49 0.0017 22.3 3.0 26 32-59 108-133 (141)
40 3bs3_A Putative DNA-binding pr 27.0 16 0.00053 21.2 0.3 44 9-54 27-70 (76)
41 2ef8_A C.ECOT38IS, putative tr 26.5 67 0.0023 18.6 3.3 46 10-57 28-77 (84)
42 3fym_A Putative uncharacterize 25.9 36 0.0012 22.6 2.1 27 33-61 50-76 (130)
43 3kz3_A Repressor protein CI; f 25.8 20 0.00067 21.3 0.6 20 34-55 54-73 (80)
44 2o8n_A APOA-I binding protein; 25.6 72 0.0025 24.3 3.9 40 25-66 28-67 (265)
45 3oou_A LIN2118 protein; protei 25.3 1.3E+02 0.0043 18.7 7.7 79 37-134 24-106 (108)
46 3a5r_A Benzalacetone synthase; 25.3 63 0.0022 25.4 3.7 49 6-61 277-334 (387)
47 1b0n_A Protein (SINR protein); 24.9 50 0.0017 20.5 2.6 20 34-55 44-63 (111)
48 4ewp_A 3-oxoacyl-[acyl-carrier 24.0 2E+02 0.0069 21.9 6.4 42 85-128 69-113 (350)
49 1ee0_A 2-pyrone synthase; poly 23.6 90 0.0031 24.7 4.3 49 6-61 286-343 (402)
50 3gg7_A Uncharacterized metallo 23.6 2.1E+02 0.0071 21.3 6.2 56 8-65 179-242 (254)
51 3trb_A Virulence-associated pr 23.5 59 0.002 20.7 2.7 23 31-55 53-75 (104)
52 3op9_A PLI0006 protein; struct 23.3 49 0.0017 20.9 2.3 21 33-55 50-70 (114)
53 3ivp_A Putative transposon-rel 22.5 39 0.0013 21.9 1.7 22 32-55 52-73 (126)
54 1r69_A Repressor protein CI; g 22.4 40 0.0014 18.8 1.6 42 9-56 18-62 (69)
55 2ewt_A BLDD, putative DNA-bind 22.0 19 0.00064 20.6 -0.0 19 33-53 51-69 (71)
56 3mkl_A HTH-type transcriptiona 21.6 1.6E+02 0.0055 18.6 6.4 23 111-135 86-108 (120)
57 3cec_A Putative antidote prote 21.5 67 0.0023 19.9 2.7 21 33-55 59-79 (104)
58 3ov2_A Curcumin synthase; type 21.0 58 0.002 25.9 2.7 52 5-61 280-338 (393)
59 1x2m_A LAG1 longevity assuranc 20.9 87 0.003 18.5 2.9 32 21-57 18-49 (64)
60 4efi_A 3-oxoacyl-(acyl-carrier 20.8 98 0.0034 24.0 4.0 50 5-61 247-302 (354)
61 3d3j_A Enhancer of mRNA-decapp 20.8 1.2E+02 0.004 23.5 4.4 39 25-66 77-115 (306)
62 3viq_B Mating-type switching p 20.7 55 0.0019 20.8 2.0 27 31-59 55-81 (85)
63 3t76_A VANU, transcriptional r 20.6 25 0.00086 22.0 0.4 43 9-54 41-83 (88)
64 1jzt_A Hypothetical 27.5 kDa p 20.3 81 0.0028 23.6 3.3 40 25-66 4-44 (246)
65 2eby_A Putative HTH-type trans 20.1 76 0.0026 19.9 2.7 43 9-56 28-73 (113)
No 1
>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET: HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*
Probab=99.86 E-value=4.2e-23 Score=154.37 Aligned_cols=100 Identities=13% Similarity=0.193 Sum_probs=84.3
Q ss_pred CcchHHHHHHHHHHhCCCCccceeccccCCchHHHHHHHHHHHhhCCCCHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHh
Q psy2439 1 LEYGDDVWLKVLKKAGCKVSCFNTHHIYPDIYMPDLATACASVIEGDLTSEYFMEFFGKCFVRYFSNLGIILAIAFQKLE 80 (146)
Q Consensus 1 ~~~G~~~W~~i~~~a~~~~~~f~~~~~Y~d~~~~~Lv~a~~~~~~g~~~~~~~l~~fG~~~v~~~~myG~i~~~~~v~~~ 80 (146)
++||+++|++|+++||++++.|+++++|||+++.+|+.|+|+ +||+ |++++++.||++|++++... +
T Consensus 15 ~~~G~e~w~~i~~~a~~~~~~f~~~~~Y~D~~~~~lv~a~s~-~~g~-~~~~ll~~fG~~~~~~~~~~-y---------- 81 (181)
T 2kii_A 15 AQCGMSVWNELLEKHAPKDRVYVSAKSYAESELFSIVQDVAQ-RLNM-PIQDVVKAFGQFLFNGLASR-H---------- 81 (181)
T ss_dssp HHTCHHHHHHHHHHHCCSSCCCCSSCCTTTTHHHHHHHHHHH-HTTC-CHHHHHHHHHHHHHHHHHHH-H----------
T ss_pred HHcCHHHHHHHHHHhCCCCCceeeccccCHHHHHHHHHHHHH-HHCc-CHHHHHHHHHHHHHHHHHHH-h----------
Confidence 379999999999999998889999999999999999999999 9999 99999999999999988755 5
Q ss_pred hcHHHHHHHHHHhCCCC--ccce-ee----ccCCCCChHHHHHH
Q psy2439 81 YGDDVWLKVLKKAGCKV--SCFN-TH----HIYPDIYMPDLATA 117 (146)
Q Consensus 81 ~G~~~w~~il~~~~~~~--~~~~-~h----~~Ypd~~~p~f~~~ 117 (146)
+...+ .+.+..+| +.+. +| +.||++++|+|.|.
T Consensus 82 ---~~~l~-~g~~~~dFL~~ld~~lH~~v~~~yp~~~~Psf~~~ 121 (181)
T 2kii_A 82 ---TDVVD-KFDDFTSLVMGIHDVIHLEVNKLYHEPSLPHINGQ 121 (181)
T ss_dssp ---HHHHG-GGSSHHHHHTTTTTTHHHHHHHHSSCSCCCEEEEE
T ss_pred ---HHHHh-cCCCHHHHHHHHhHHHHHHHHHhCCCCCCCeeEEE
Confidence 44444 44444444 4455 55 69999999999763
No 2
>3tfg_A ALR2278 protein; heme-based sensor domain, GAS binding, signaling protein; HET: HEM; 1.90A {Nostoc SP} PDB: 3tfd_A* 3tfe_A* 3tff_A* 2o09_A* 2o0c_A* 2o0g_A* 3l6j_A* 3tf8_A* 3tf9_A* 3tfa_A*
Probab=99.85 E-value=2.8e-23 Score=156.32 Aligned_cols=102 Identities=24% Similarity=0.345 Sum_probs=88.2
Q ss_pred CcchHHHHHHHHHHhCC-CCccceeccccCCchHHHHHHHHHHHhhCCCCHHHHHHHHhhHHHHHhhhhhhHHHHHHHHH
Q psy2439 1 LEYGDDVWLKVLKKAGC-KVSCFNTHHIYPDIYMPDLATACASVIEGDLTSEYFMEFFGKCFVRYFSNLGIILAIAFQKL 79 (146)
Q Consensus 1 ~~~G~~~W~~i~~~a~~-~~~~f~~~~~Y~d~~~~~Lv~a~~~~~~g~~~~~~~l~~fG~~~v~~~~myG~i~~~~~v~~ 79 (146)
++||+++|++|+++||+ +++.|+++++|||+++++|+.++|+ ++|+ |++++++.||++|++++...|+
T Consensus 15 ~~~G~e~w~~i~~~a~~~~~~~f~~~~~Y~D~~~~~lv~~~s~-~~g~-~~~~ll~~fG~~~~~~~~~~~y--------- 83 (189)
T 3tfg_A 15 KHHGEDTWEAIKQKAGLEDIDFFVGMEAYSDDVTYHLVGAASE-VLGK-PAEEWWIAFGEYWVTYTSEEGY--------- 83 (189)
T ss_dssp HHHCHHHHHHHHHHTTCSSCCSCCTTSBCCHHHHHHHHHHHHH-HHCC-CHHHHHHHHHHHHHHHHHHTTC---------
T ss_pred HHcCHHHHHHHHHHhCCCCCCeEeeeceeChHHHHHHHHHHHH-HHCc-CHHHHHHHHHHHHHHHhhhhhc---------
Confidence 47999999999999999 5679999999999999999999999 9999 9999999999999999988887
Q ss_pred hhcHHHHHHHHHHhCCCC--ccceee----ccCCCCChHHHHHH
Q psy2439 80 EYGDDVWLKVLKKAGCKV--SCFNTH----HIYPDIYMPDLATA 117 (146)
Q Consensus 80 ~~G~~~w~~il~~~~~~~--~~~~~h----~~Ypd~~~p~f~~~ 117 (146)
+...++++.+..+| +.+.+| +.||++++|+|.|.
T Consensus 84 ----~~~l~~~g~~l~dFL~~ld~lH~~v~~~yp~~~~Psf~~~ 123 (189)
T 3tfg_A 84 ----GELLASAGDSLPEFMENLDNLHARVGLSFPQLRPPAFECQ 123 (189)
T ss_dssp ----HHHHHHTCSSHHHHHHHHHHHHHHHHHHSTTCCCCEEEEE
T ss_pred ----HHHHHhcCCCHHHHHHhHHHHHHHHHHhCCCCCCCeEEEE
Confidence 55666655555555 445555 59999999999764
No 3
>3sj5_A Methyl-accepting chemotaxis protein; no or O2-sensing protein, signaling protein; HET: HEM; 1.67A {Caldanaerobacter subterraneus} SCOP: d.278.1.1 PDB: 3nvr_A* 3tf0_A* 1u4h_A* 1u56_A* 3m0b_A* 1u55_A* 3tf1_A* 1xbn_A* 3nvu_A* 3eee_A* 3iqb_A* 3lah_A* 3lai_A*
Probab=99.82 E-value=5.2e-22 Score=149.33 Aligned_cols=104 Identities=16% Similarity=0.148 Sum_probs=80.6
Q ss_pred CcchHHHHHHHHHHhCCCC-ccceeccccCCchHHHHHHHHHHHhhCCCCHHHHHHHHhhHHHHHhh-hhhhHHHHHHHH
Q psy2439 1 LEYGDDVWLKVLKKAGCKV-SCFNTHHIYPDIYMPDLATACASVIEGDLTSEYFMEFFGKCFVRYFS-NLGIILAIAFQK 78 (146)
Q Consensus 1 ~~~G~~~W~~i~~~a~~~~-~~f~~~~~Y~d~~~~~Lv~a~~~~~~g~~~~~~~l~~fG~~~v~~~~-myG~i~~~~~v~ 78 (146)
++||+++|++|+++||++. +.|+++++|||+++++|+.|+|+ +||+ |++++++.||++|++++. .|+-++.
T Consensus 15 ~~yG~e~w~~i~~~a~~~~~~~f~~~~~Y~D~~~~~lv~a~s~-~~g~-~~~~ll~~fG~~~~~~~~~~y~~~l~----- 87 (188)
T 3sj5_A 15 DLYGNDVVDESLKSVGWEPDRVITPLEDIDDDEVRRIFAKVSE-KTGK-NVNEIWREVGRQNIKTFSEWFPSYFA----- 87 (188)
T ss_dssp HHHCHHHHHHHHHTTTCCTTCCCCSSCBCCHHHHHHHHHHHHH-HHCC-CHHHHHHHHHHHHHHHHHHHCGGGTT-----
T ss_pred HHcCHHHHHHHHHHcCCCCCCceeecceeChHHHHHHHHHHHH-HHCc-CHHHHHHHHHHHHHHHHHHhHHHHhC-----
Confidence 4799999999999999995 58999999999999999999999 9999 999999999999999875 4544322
Q ss_pred HhhcHHHHHHHHHHhCCCCccceeeccCCCCChHHHHHH
Q psy2439 79 LEYGDDVWLKVLKKAGCKVSCFNTHHIYPDIYMPDLATA 117 (146)
Q Consensus 79 ~~~G~~~w~~il~~~~~~~~~~~~h~~Ypd~~~p~f~~~ 117 (146)
| ....+.+.. ++..|..+.+.||++++|+|.+.
T Consensus 88 ---g-~~~~dFL~~--ld~lH~~v~~~yp~~~~Psf~~~ 120 (188)
T 3sj5_A 88 ---G-RRLVNFLMM--MDEVHLQLTKMIKGATPPRLIAK 120 (188)
T ss_dssp ---T-CCHHHHHHT--HHHHHHHTTTTSTTCCCCEEEEE
T ss_pred ---C-CCHHHHHHH--HHHHHHHHHHhCCCCCCCeEEEE
Confidence 1 111111111 11134445579999999999764
No 4
>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET: HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*
Probab=99.72 E-value=1.3e-17 Score=124.50 Aligned_cols=77 Identities=17% Similarity=0.237 Sum_probs=74.5
Q ss_pred hhhhHHH--HHHHHHhhcHHHHHHHHHHhCCCCccceeeccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q psy2439 67 NLGIILA--IAFQKLEYGDDVWLKVLKKAGCKVSCFNTHHIYPDIYMPDLATACASVIEGDLTSEYFMEFFGKCFVRYFS 144 (146)
Q Consensus 67 myG~i~~--~~~v~~~~G~~~w~~il~~~~~~~~~~~~h~~Ypd~~~p~f~~~~s~~~~g~~~~~~~~~~fG~~~v~~~~ 144 (146)
|||+|+. +++|+++||++.|.+++.+++++.+.|+.++.|||..+++++.++|+ +||+ |++++++.||++|++++.
T Consensus 1 M~G~I~~~~~~~v~~~~G~e~w~~i~~~a~~~~~~f~~~~~Y~D~~~~~lv~a~s~-~~g~-~~~~ll~~fG~~~~~~~~ 78 (181)
T 2kii_A 1 MKGIIFNVLEDMVVAQCGMSVWNELLEKHAPKDRVYVSAKSYAESELFSIVQDVAQ-RLNM-PIQDVVKAFGQFLFNGLA 78 (181)
T ss_dssp CCCHHHHHHHHHHHHHTCHHHHHHHHHHHCCSSCCCCSSCCTTTTHHHHHHHHHHH-HTTC-CHHHHHHHHHHHHHHHHH
T ss_pred CeehHHHHHHHHHHHHcCHHHHHHHHHHhCCCCCceeeccccCHHHHHHHHHHHHH-HHCc-CHHHHHHHHHHHHHHHHH
Confidence 8999999 99999999999999999999996699999999999999999999999 9999 999999999999999986
Q ss_pred c
Q psy2439 145 N 145 (146)
Q Consensus 145 ~ 145 (146)
+
T Consensus 79 ~ 79 (181)
T 2kii_A 79 S 79 (181)
T ss_dssp H
T ss_pred H
Confidence 5
No 5
>3sj5_A Methyl-accepting chemotaxis protein; no or O2-sensing protein, signaling protein; HET: HEM; 1.67A {Caldanaerobacter subterraneus} SCOP: d.278.1.1 PDB: 3nvr_A* 3tf0_A* 1u4h_A* 1u56_A* 3m0b_A* 1u55_A* 3tf1_A* 1xbn_A* 3nvu_A* 3eee_A* 3iqb_A* 3lah_A* 3lai_A*
Probab=99.71 E-value=1.4e-17 Score=125.13 Aligned_cols=77 Identities=18% Similarity=0.191 Sum_probs=74.2
Q ss_pred hhhhHHH--HHHHHHhhcHHHHHHHHHHhCCCC-ccceeeccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q psy2439 67 NLGIILA--IAFQKLEYGDDVWLKVLKKAGCKV-SCFNTHHIYPDIYMPDLATACASVIEGDLTSEYFMEFFGKCFVRYF 143 (146)
Q Consensus 67 myG~i~~--~~~v~~~~G~~~w~~il~~~~~~~-~~~~~h~~Ypd~~~p~f~~~~s~~~~g~~~~~~~~~~fG~~~v~~~ 143 (146)
|||+|+. +++|+++||++.|.+++.+++++. +.|..+..|||..+++++.++|+ ++|+ |++++++.||++||+++
T Consensus 1 MkG~I~~~~~~~v~~~yG~e~w~~i~~~a~~~~~~~f~~~~~Y~D~~~~~lv~a~s~-~~g~-~~~~ll~~fG~~~~~~~ 78 (188)
T 3sj5_A 1 MKGTFVGTWIKTLRDLYGNDVVDESLKSVGWEPDRVITPLEDIDDDEVRRIFAKVSE-KTGK-NVNEIWREVGRQNIKTF 78 (188)
T ss_dssp CBHHHHHHHHHHHHHHHCHHHHHHHHHTTTCCTTCCCCSSCBCCHHHHHHHHHHHHH-HHCC-CHHHHHHHHHHHHHHHH
T ss_pred CeehHHHHHHHHHHHHcCHHHHHHHHHHcCCCCCCceeecceeChHHHHHHHHHHHH-HHCc-CHHHHHHHHHHHHHHHH
Confidence 8999999 999999999999999999999986 57999999999999999999999 9999 99999999999999998
Q ss_pred hc
Q psy2439 144 SN 145 (146)
Q Consensus 144 ~~ 145 (146)
.+
T Consensus 79 ~~ 80 (188)
T 3sj5_A 79 SE 80 (188)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 6
>3tfg_A ALR2278 protein; heme-based sensor domain, GAS binding, signaling protein; HET: HEM; 1.90A {Nostoc SP} PDB: 3tfd_A* 3tfe_A* 3tff_A* 2o09_A* 2o0c_A* 2o0g_A* 3l6j_A* 3tf8_A* 3tf9_A* 3tfa_A*
Probab=99.71 E-value=1.9e-17 Score=124.41 Aligned_cols=76 Identities=25% Similarity=0.405 Sum_probs=72.8
Q ss_pred hhhhHHH--HHHHHHhhcHHHHHHHHHHhCC-CCccceeeccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q psy2439 67 NLGIILA--IAFQKLEYGDDVWLKVLKKAGC-KVSCFNTHHIYPDIYMPDLATACASVIEGDLTSEYFMEFFGKCFVRYF 143 (146)
Q Consensus 67 myG~i~~--~~~v~~~~G~~~w~~il~~~~~-~~~~~~~h~~Ypd~~~p~f~~~~s~~~~g~~~~~~~~~~fG~~~v~~~ 143 (146)
|||+|++ ++||+++||++.|.+++.++++ +.+.|+.+..|||..+++++.++|+ ++|+ |++++++.||++||+++
T Consensus 1 M~G~I~~~l~~~v~~~~G~e~w~~i~~~a~~~~~~~f~~~~~Y~D~~~~~lv~~~s~-~~g~-~~~~ll~~fG~~~~~~~ 78 (189)
T 3tfg_A 1 MYGLVNKAIQDMISKHHGEDTWEAIKQKAGLEDIDFFVGMEAYSDDVTYHLVGAASE-VLGK-PAEEWWIAFGEYWVTYT 78 (189)
T ss_dssp CBHHHHHHHHHHHHHHHCHHHHHHHHHHTTCSSCCSCCTTSBCCHHHHHHHHHHHHH-HHCC-CHHHHHHHHHHHHHHHH
T ss_pred CeehHHHHHHHHHHHHcCHHHHHHHHHHhCCCCCCeEeeeceeChHHHHHHHHHHHH-HHCc-CHHHHHHHHHHHHHHHh
Confidence 8999999 9999999999999999999999 4478999999999999999999999 9999 99999999999999987
Q ss_pred h
Q psy2439 144 S 144 (146)
Q Consensus 144 ~ 144 (146)
.
T Consensus 79 ~ 79 (189)
T 3tfg_A 79 S 79 (189)
T ss_dssp H
T ss_pred h
Confidence 4
No 7
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=62.77 E-value=6.9 Score=23.46 Aligned_cols=49 Identities=6% Similarity=-0.126 Sum_probs=30.1
Q ss_pred HHHHHhCCCCccceeccccCCchHHHHHHHHHHHhhCCCCHHHHHHHHhhH
Q psy2439 10 KVLKKAGCKVSCFNTHHIYPDIYMPDLATACASVIEGDLTSEYFMEFFGKC 60 (146)
Q Consensus 10 ~i~~~a~~~~~~f~~~~~Y~d~~~~~Lv~a~~~~~~g~~~~~~~l~~fG~~ 60 (146)
++-+.+|++.........=.-......+..+|+ .+|. ++++++...+..
T Consensus 32 elA~~~gis~~~is~~e~g~~~~~~~~l~~l~~-~l~~-~~~~l~~~~~~~ 80 (83)
T 3f6w_A 32 ELAARLGRPQSFVSKTENAERRLDVIEFMDFCR-GIGT-DPYALLSKLEAM 80 (83)
T ss_dssp HHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHH-HHTC-CHHHHHHHHHTT
T ss_pred HHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHH-HcCC-CHHHHHHHHHhh
Confidence 455556665322222111112345677888999 9999 999999887753
No 8
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=51.54 E-value=12 Score=22.50 Aligned_cols=45 Identities=9% Similarity=0.068 Sum_probs=28.9
Q ss_pred HHHHHHhCCCCccceecccc-CCchHHHHHHHHHHHhhCCCCHHHHHH
Q psy2439 9 LKVLKKAGCKVSCFNTHHIY-PDIYMPDLATACASVIEGDLTSEYFME 55 (146)
Q Consensus 9 ~~i~~~a~~~~~~f~~~~~Y-~d~~~~~Lv~a~~~~~~g~~~~~~~l~ 55 (146)
.++.+.+|++...+.....- .-......+..+|+ .+|+ ++++++.
T Consensus 27 ~elA~~~gis~~~is~~E~G~~~~p~~~~l~~ia~-~l~v-~~~~l~~ 72 (78)
T 3qq6_A 27 SELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSA-VLDV-SVHTLLD 72 (78)
T ss_dssp HHHHHHHTCCHHHHHHHHTTSCCCCBHHHHHHHHH-HHTC-CHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHH-HHCc-CHHHHhC
Confidence 35566667764333333333 23456677888899 9999 9988875
No 9
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=50.52 E-value=19 Score=21.13 Aligned_cols=45 Identities=9% Similarity=-0.063 Sum_probs=25.1
Q ss_pred HHHHHhCCCCccceeccccCCchHHHHHHHHHHHhhCCCCHHHHHHH
Q psy2439 10 KVLKKAGCKVSCFNTHHIYPDIYMPDLATACASVIEGDLTSEYFMEF 56 (146)
Q Consensus 10 ~i~~~a~~~~~~f~~~~~Y~d~~~~~Lv~a~~~~~~g~~~~~~~l~~ 56 (146)
++.+++|++...+.....=.-......+..+|+ .+|+ +.++++..
T Consensus 20 ~lA~~~gis~~~i~~~e~g~~~p~~~~l~~ia~-~l~v-~~~~l~~~ 64 (77)
T 2k9q_A 20 SVAEEMGISRQQLCNIEQSETAPVVVKYIAFLR-SKGV-DLNALFDR 64 (77)
T ss_dssp HHHHHHTSCHHHHHHHHTCCSCCHHHHHHHHHH-HTTC-CHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHH-HhCc-CHHHHhCc
Confidence 344555665322222111111245667778888 8888 88887653
No 10
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=46.86 E-value=15 Score=20.65 Aligned_cols=45 Identities=9% Similarity=-0.007 Sum_probs=24.1
Q ss_pred HHHHHHhCCCCccceeccccCCchHHHHHHHHHHHhhCCCCHHHHHH
Q psy2439 9 LKVLKKAGCKVSCFNTHHIYPDIYMPDLATACASVIEGDLTSEYFME 55 (146)
Q Consensus 9 ~~i~~~a~~~~~~f~~~~~Y~d~~~~~Lv~a~~~~~~g~~~~~~~l~ 55 (146)
.++.+.+|++...+.....=.-......+..+|+ .+|. ++++++.
T Consensus 22 ~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~-~l~~-~~~~l~~ 66 (68)
T 2r1j_L 22 AALGKMVGVSNVAISQWERSETEPNGENLLALSK-ALQC-SPDYLLK 66 (68)
T ss_dssp HHHHHHHTSCHHHHHHHHTTSSCCBHHHHHHHHH-HTTS-CHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHH-HhCC-CHHHHhc
Confidence 3455556666322222111111123556777888 8888 8888764
No 11
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=45.44 E-value=21 Score=18.91 Aligned_cols=29 Identities=10% Similarity=-0.067 Sum_probs=23.5
Q ss_pred ccCCchHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy2439 27 IYPDIYMPDLATACASVIEGDLTSEYFMEFF 57 (146)
Q Consensus 27 ~Y~d~~~~~Lv~a~~~~~~g~~~~~~~l~~f 57 (146)
.+=|+.+.+-+...|+ .+|. |..++++..
T Consensus 7 v~l~~~l~~~Ld~~a~-~~g~-srS~~ir~a 35 (45)
T 2cpg_A 7 ITLSESVLENLEKMAR-EMGL-SKSAMISVA 35 (45)
T ss_dssp EEEEHHHHHHHHHHHH-HHTC-CHHHHHHHH
T ss_pred EecCHHHHHHHHHHHH-HHCc-CHHHHHHHH
Confidence 3446678888899999 9999 999998754
No 12
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=44.61 E-value=19 Score=21.38 Aligned_cols=47 Identities=6% Similarity=-0.107 Sum_probs=27.9
Q ss_pred HHHHHhCCCCccceeccccCCchHHHHHHHHHHHhhCCCCHHHHHHHHh
Q psy2439 10 KVLKKAGCKVSCFNTHHIYPDIYMPDLATACASVIEGDLTSEYFMEFFG 58 (146)
Q Consensus 10 ~i~~~a~~~~~~f~~~~~Y~d~~~~~Lv~a~~~~~~g~~~~~~~l~~fG 58 (146)
++.+.+|++.........=.-......+..+|+ .+|+ ++++++..-.
T Consensus 29 ~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~-~l~v-~~~~l~~~~~ 75 (82)
T 3s8q_A 29 DLAYKSNLDRTYISGIERNSRNLTIKSLELIMK-GLEV-SDVVFFEMLI 75 (82)
T ss_dssp HHHHHHTCCHHHHHHHHTTCCCCBHHHHHHHHH-HTTC-CHHHHHHHHH
T ss_pred HHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHH-HHCc-CHHHHhcCCh
Confidence 445555665432222222122345677888899 9999 9998876543
No 13
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=44.45 E-value=29 Score=19.06 Aligned_cols=30 Identities=13% Similarity=-0.068 Sum_probs=24.1
Q ss_pred cccCCchHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy2439 26 HIYPDIYMPDLATACASVIEGDLTSEYFMEFF 57 (146)
Q Consensus 26 ~~Y~d~~~~~Lv~a~~~~~~g~~~~~~~l~~f 57 (146)
...=++++.+-+..+|+ ..|. |..++++..
T Consensus 13 ~vrl~~el~~~l~~~a~-~~g~-s~s~~ir~a 42 (55)
T 2k9i_A 13 GVYIPQEWHDRLMEIAK-EKNL-TLSDVCRLA 42 (55)
T ss_dssp EEEECHHHHHHHHHHHH-HHTC-CHHHHHHHH
T ss_pred EEEcCHHHHHHHHHHHH-HhCC-CHHHHHHHH
Confidence 34446778888899999 9999 999998864
No 14
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=42.97 E-value=21 Score=20.70 Aligned_cols=23 Identities=4% Similarity=-0.204 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHH
Q psy2439 32 YMPDLATACASVIEGDLTSEYFMEF 56 (146)
Q Consensus 32 ~~~~Lv~a~~~~~~g~~~~~~~l~~ 56 (146)
.....+..+|+ .+|. ++++++..
T Consensus 50 ~~~~~l~~la~-~l~~-~~~~l~~~ 72 (77)
T 2b5a_A 50 ISLINIHKICA-ALDI-PASTFFRK 72 (77)
T ss_dssp CBHHHHHHHHH-HTTC-CHHHHHHH
T ss_pred CCHHHHHHHHH-HhCc-CHHHHhcc
Confidence 34566778888 9999 99888764
No 15
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=42.04 E-value=12 Score=20.94 Aligned_cols=44 Identities=11% Similarity=-0.136 Sum_probs=24.7
Q ss_pred HHHHHHhCCCCccceeccccCCchHHHHHHHHHHHhhCCCCHHHHH
Q psy2439 9 LKVLKKAGCKVSCFNTHHIYPDIYMPDLATACASVIEGDLTSEYFM 54 (146)
Q Consensus 9 ~~i~~~a~~~~~~f~~~~~Y~d~~~~~Lv~a~~~~~~g~~~~~~~l 54 (146)
.++.+.+|++.........=........+..+|+ .+|. ++++++
T Consensus 18 ~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~-~l~~-~~~~l~ 61 (66)
T 2xi8_A 18 SELAALLEVSRQTINGIEKNKYNPSLQLALKIAY-YLNT-PLEDIF 61 (66)
T ss_dssp HHHHHHHTSCHHHHHHHHTTSCCCCHHHHHHHHH-HTTS-CHHHHE
T ss_pred HHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHH-HHCc-CHHHHh
Confidence 4556666766432222211111234566778888 8888 888764
No 16
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=40.87 E-value=16 Score=21.27 Aligned_cols=42 Identities=14% Similarity=-0.007 Sum_probs=24.2
Q ss_pred HHHHHHhCCCCccc---eeccccCCchHHHHHHHHHHHhhCCCCHHHHH
Q psy2439 9 LKVLKKAGCKVSCF---NTHHIYPDIYMPDLATACASVIEGDLTSEYFM 54 (146)
Q Consensus 9 ~~i~~~a~~~~~~f---~~~~~Y~d~~~~~Lv~a~~~~~~g~~~~~~~l 54 (146)
.++.+.+|++...+ ..... .......+..+|+ .+|. |+++++
T Consensus 24 ~~lA~~~gis~~~i~~~e~g~~--~~~~~~~l~~ia~-~l~~-~~~~l~ 68 (78)
T 3b7h_A 24 NRVATLAGLNQSTVNAMFEGRS--KRPTITTIRKVCG-TLGI-SVHDFF 68 (78)
T ss_dssp HHHHHHHTCCHHHHHHHHCTTC--CCCCHHHHHHHHH-HHTC-CHHHHT
T ss_pred HHHHHHHCcCHHHHHHHHcCCC--CCCCHHHHHHHHH-HcCC-CHHHHh
Confidence 34555666664222 22222 1234566777888 8888 888875
No 17
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=40.01 E-value=22 Score=21.92 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=25.8
Q ss_pred cceeccccCCchHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy2439 21 CFNTHHIYPDIYMPDLATACASVIEGDLTSEYFMEFF 57 (146)
Q Consensus 21 ~f~~~~~Y~d~~~~~Lv~a~~~~~~g~~~~~~~l~~f 57 (146)
.|..+..|||.+. ...+|. .||+ |...+.-+|
T Consensus 25 ~f~~~~~yPd~~~---r~~La~-~tGL-~~~~IqVWF 56 (71)
T 1wi3_A 25 FIHDVGLYPDQEA---IHTLSA-QLDL-PKHTIIKFF 56 (71)
T ss_dssp HHHHHCSCCCHHH---HHHHHH-HSCC-CHHHHHHHH
T ss_pred HHHhcCCCCCHHH---HHHHHH-HhCC-CHHHHHHhh
Confidence 5677789999865 567788 9999 999988766
No 18
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=39.87 E-value=25 Score=22.20 Aligned_cols=48 Identities=8% Similarity=-0.083 Sum_probs=27.9
Q ss_pred HHHHHhCCCCccceeccccCCchHHHHHHHHHHHhhCCCCHHHHHHHHhh
Q psy2439 10 KVLKKAGCKVSCFNTHHIYPDIYMPDLATACASVIEGDLTSEYFMEFFGK 59 (146)
Q Consensus 10 ~i~~~a~~~~~~f~~~~~Y~d~~~~~Lv~a~~~~~~g~~~~~~~l~~fG~ 59 (146)
++.+++|++.........=.-......+..+|+ .+|+ ++++++..-..
T Consensus 46 elA~~~gis~~~is~iE~G~~~ps~~~l~~ia~-~l~v-~~~~l~~~~~~ 93 (99)
T 3g5g_A 46 DLAYKSNLDRTYISGIERNSRNLTIKSLELIMK-GLEV-SDVVFFEMLIK 93 (99)
T ss_dssp HHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHH-HTTC-CHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHH-HHCc-CHHHHhccCHH
Confidence 445555665322222211112345677888899 9999 99988765443
No 19
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=38.99 E-value=23 Score=20.32 Aligned_cols=22 Identities=9% Similarity=0.016 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHH
Q psy2439 33 MPDLATACASVIEGDLTSEYFMEF 56 (146)
Q Consensus 33 ~~~Lv~a~~~~~~g~~~~~~~l~~ 56 (146)
....+..+|+ .+|. +++.++..
T Consensus 46 ~~~~l~~ia~-~l~~-~~~~l~~~ 67 (76)
T 1adr_A 46 NGENLLALSK-ALQC-SPDYLLKG 67 (76)
T ss_dssp CHHHHHHHHH-HTTS-CHHHHHHT
T ss_pred CHHHHHHHHH-HHCc-CHHHHhcC
Confidence 3455677888 8888 88887653
No 20
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=38.78 E-value=29 Score=19.09 Aligned_cols=28 Identities=11% Similarity=-0.026 Sum_probs=22.6
Q ss_pred CchHHHHHHHHHHHhhCCCCHHHHHHHHhh
Q psy2439 30 DIYMPDLATACASVIEGDLTSEYFMEFFGK 59 (146)
Q Consensus 30 d~~~~~Lv~a~~~~~~g~~~~~~~l~~fG~ 59 (146)
++.+.+-+.++|+ .+|. |...+++..=+
T Consensus 11 ~~~l~~~l~~lA~-~~~r-s~s~lir~Ai~ 38 (52)
T 2gpe_A 11 DDATRERIKSAAT-RIDR-TPHWLIKQAIF 38 (52)
T ss_dssp EHHHHHHHHHHHH-HTTC-CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HHCc-CHHHHHHHHHH
Confidence 4567888899999 9999 99999876433
No 21
>2ay0_A Bifunctional PUTA protein; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.43.1.11
Probab=37.58 E-value=43 Score=19.31 Aligned_cols=27 Identities=11% Similarity=0.014 Sum_probs=21.8
Q ss_pred CchHHHHHHHHHHHhhCCCCHHHHHHHHh
Q psy2439 30 DIYMPDLATACASVIEGDLTSEYFMEFFG 58 (146)
Q Consensus 30 d~~~~~Lv~a~~~~~~g~~~~~~~l~~fG 58 (146)
|+.+.+-+.++|+ .+|. |+..+++..=
T Consensus 11 ~~el~~rL~~lA~-~~~r-s~s~lireAi 37 (58)
T 2ay0_A 11 DDATRERIKSAAT-RIDR-TPHWLIKQAI 37 (58)
T ss_dssp CHHHHHHHHHHHH-HTTC-CHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HHCc-CHHHHHHHHH
Confidence 4467777889999 9999 9999987643
No 22
>2p0u_A Stilbenecarboxylate synthase 2; polyketide synthase, PKS type transferase; 1.90A {Marchantia polymorpha}
Probab=35.70 E-value=39 Score=27.02 Aligned_cols=49 Identities=10% Similarity=0.074 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhCCCCcc----ceeccccCCchHHHHHHHHHHHhhCCCCHHHH------HHHHhhHH
Q psy2439 5 DDVWLKVLKKAGCKVSC----FNTHHIYPDIYMPDLATACASVIEGDLTSEYF------MEFFGKCF 61 (146)
Q Consensus 5 ~~~W~~i~~~a~~~~~~----f~~~~~Y~d~~~~~Lv~a~~~~~~g~~~~~~~------l~~fG~~~ 61 (146)
.+.++++++++|+++ . |..| .--.+++.++++ .+|+ |.+.+ ++.+|...
T Consensus 298 ~~~i~~~L~~~gl~d-~~di~~v~H-----q~~~~i~~~~~~-~Lgl-~~ek~~~s~~~l~~~GNts 356 (413)
T 2p0u_A 298 GGFLKDTKNLVGASS-WNELFWAVH-----PGGPAILDQVEA-KLEL-EKGKFQASRDILSDYGNMS 356 (413)
T ss_dssp HHHHHHHHHHTTCCS-GGGSEEEEC-----CSSHHHHHHHHH-HTTC-CGGGGHHHHHHHHHHCBCG
T ss_pred HHHHHHHHHHcCCCC-ccceEEEEC-----CCCHHHHHHHHH-HhCC-CHHHHHHHHHHHHHcCcch
Confidence 356788899999872 2 3343 346788999999 9999 98864 45666554
No 23
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=34.86 E-value=38 Score=22.05 Aligned_cols=27 Identities=0% Similarity=0.064 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHhhHH
Q psy2439 33 MPDLATACASVIEGDLTSEYFMEFFGKCF 61 (146)
Q Consensus 33 ~~~Lv~a~~~~~~g~~~~~~~l~~fG~~~ 61 (146)
...++..+|+ .+|+ ++++++..+-.-.
T Consensus 54 ~~~~l~~iA~-~Lgv-~~~~L~~~~~~~~ 80 (112)
T 2wus_R 54 IKSYIKRYSE-FLEL-SPDEMLKLYEEGK 80 (112)
T ss_dssp HHHHHHHHHH-HSSC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HhCc-CHHHHHHHHHhhc
Confidence 5678899999 9999 9999998776654
No 24
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=34.34 E-value=16 Score=25.96 Aligned_cols=47 Identities=6% Similarity=0.017 Sum_probs=33.6
Q ss_pred HHHHHHHHhCCCCccceeccccCCchHHHHHHHHHHHhhCCCCHHHHHH
Q psy2439 7 VWLKVLKKAGCKVSCFNTHHIYPDIYMPDLATACASVIEGDLTSEYFME 55 (146)
Q Consensus 7 ~W~~i~~~a~~~~~~f~~~~~Y~d~~~~~Lv~a~~~~~~g~~~~~~~l~ 55 (146)
+|++|-+..|++....++-..=-.......+.++++ .+|+ |.+++..
T Consensus 28 Twe~IAe~iG~S~v~vtaa~lGQ~~ls~e~A~kLa~-~LgL-~~e~~~~ 74 (156)
T 1dw9_A 28 SFAEIADGTGLAEAFVTAALLGQQALPADAARLVGA-KLDL-DEDSILL 74 (156)
T ss_dssp CHHHHHTTSSSCHHHHHHHHTTSSCCCHHHHHHHHH-HTTC-CHHHHHH
T ss_pred CHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHH-HhCc-CHHHHHH
Confidence 599999999988733333333334556678888899 9999 9998654
No 25
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=33.03 E-value=33 Score=21.90 Aligned_cols=23 Identities=9% Similarity=0.033 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHH
Q psy2439 32 YMPDLATACASVIEGDLTSEYFMEF 56 (146)
Q Consensus 32 ~~~~Lv~a~~~~~~g~~~~~~~l~~ 56 (146)
.....+..+|+ .+|. ++++++..
T Consensus 68 ~~~~~l~~la~-~l~v-~~~~l~~~ 90 (117)
T 3f52_A 68 VSSELLASVCH-ALGA-SVADVLIE 90 (117)
T ss_dssp CCHHHHHHHHH-HHTC-CHHHHHHH
T ss_pred CCHHHHHHHHH-HhCC-CHHHHHhc
Confidence 45677778888 8888 88887764
No 26
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=32.77 E-value=8.5 Score=27.95 Aligned_cols=38 Identities=5% Similarity=-0.045 Sum_probs=26.8
Q ss_pred Ccch--HHHHHHHHHHhCCCCccceeccccCCchHHHHHH
Q psy2439 1 LEYG--DDVWLKVLKKAGCKVSCFNTHHIYPDIYMPDLAT 38 (146)
Q Consensus 1 ~~~G--~~~W~~i~~~a~~~~~~f~~~~~Y~d~~~~~Lv~ 38 (146)
.+|| .+.|++|+..|.+++..-.....|-+..+.....
T Consensus 23 ~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~ 62 (211)
T 4b4c_A 23 KKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIK 62 (211)
T ss_dssp TTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence 4799 7899999999999876666666665544444333
No 27
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=31.90 E-value=28 Score=17.45 Aligned_cols=14 Identities=21% Similarity=0.510 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhhhc
Q psy2439 132 MEFFGKCFVRYFSN 145 (146)
Q Consensus 132 ~~~fG~~~v~~~~~ 145 (146)
.-+||-|+++|+.+
T Consensus 18 flafgfwlfkylqk 31 (32)
T 2lx0_A 18 FLAFGFWLFKYLQK 31 (32)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhc
Confidence 35799999999875
No 28
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=31.50 E-value=12 Score=21.64 Aligned_cols=20 Identities=5% Similarity=-0.253 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhhCCCCHHHHH
Q psy2439 33 MPDLATACASVIEGDLTSEYFM 54 (146)
Q Consensus 33 ~~~Lv~a~~~~~~g~~~~~~~l 54 (146)
....+..+|+ .+|. ++++++
T Consensus 54 ~~~~l~~l~~-~l~~-~~~~l~ 73 (74)
T 1y7y_A 54 SLVNILKLAT-ALDI-EPRELF 73 (74)
T ss_dssp BHHHHHHHHH-HTTS-CGGGGC
T ss_pred CHHHHHHHHH-HhCc-CHHHHc
Confidence 3455667777 7777 776653
No 29
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=30.96 E-value=24 Score=21.32 Aligned_cols=29 Identities=17% Similarity=-0.026 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHhhHHHH
Q psy2439 33 MPDLATACASVIEGDLTSEYFMEFFGKCFVR 63 (146)
Q Consensus 33 ~~~Lv~a~~~~~~g~~~~~~~l~~fG~~~v~ 63 (146)
....+..+|+ .+|. ++++++...+.-...
T Consensus 58 ~~~~l~~ia~-~l~v-~~~~l~~~~~~~~~~ 86 (92)
T 1lmb_3 58 NAYNAALLAK-ILKV-SVEEFSPSIAREIYE 86 (92)
T ss_dssp CHHHHHHHHH-HHTS-CGGGTCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHCC-CHHHHhhhhhHHHHH
Confidence 3455777888 8888 888888776665543
No 30
>1i88_A CHS2, chalcone synthase 2; polyketide synthase, transferase; 1.45A {Medicago sativa} SCOP: c.95.1.2 c.95.1.2 PDB: 1i89_A 1i86_A 1i8b_A 1bi5_A 1cml_A* 1d6f_A* 1chw_A* 1cgz_A* 1cgk_A* 1bq6_A* 1jwx_A 1d6i_A 1d6h_A* 1u0v_A 1u0w_A* 1z1e_A* 1z1f_A*
Probab=30.76 E-value=59 Score=25.61 Aligned_cols=48 Identities=10% Similarity=0.123 Sum_probs=34.5
Q ss_pred HHHHHHHHHhCCCCcc----ceeccccCCchHHHHHHHHHHHhhCCCCHHHH------HHHHhhHH
Q psy2439 6 DVWLKVLKKAGCKVSC----FNTHHIYPDIYMPDLATACASVIEGDLTSEYF------MEFFGKCF 61 (146)
Q Consensus 6 ~~W~~i~~~a~~~~~~----f~~~~~Y~d~~~~~Lv~a~~~~~~g~~~~~~~------l~~fG~~~ 61 (146)
+.++++++++|+++ . |..|+ --.+++.++++ .+|+ |.+.+ ++.+|...
T Consensus 281 ~~i~~~L~~~gl~d-~~di~~v~Hq-----~~~~i~~~~~~-~lgl-~~ek~~~~~~~l~~~GNts 338 (389)
T 1i88_A 281 KALVEAFEPLGISD-YNSIFWIAHP-----GGPAILDQVEQ-KLAL-KPEKMNATREVLSEYGNMS 338 (389)
T ss_dssp HHHHHHHGGGTCCC-TTSSEEEECC-----SCHHHHHHHHH-HHTC-CGGGGHHHHHHHHHHCBCG
T ss_pred HHHHHHHHhcCCCc-hhhceEEECC-----CcHHHHHHHHH-HcCC-CHHHHHHHHHHHHHhCCch
Confidence 56778888999872 2 44444 36788999999 9999 98853 46666654
No 31
>1xrx_A SEQA protein; protein filament, LEFT-handed helix, DNA replication inhibit replication inhibitor; 2.15A {Escherichia coli} SCOP: a.43.1.7
Probab=30.25 E-value=16 Score=20.74 Aligned_cols=25 Identities=8% Similarity=0.057 Sum_probs=20.5
Q ss_pred CchHHHHHHHHHHHhhCCCCHHHHHHH
Q psy2439 30 DIYMPDLATACASVIEGDLTSEYFMEF 56 (146)
Q Consensus 30 d~~~~~Lv~a~~~~~~g~~~~~~~l~~ 56 (146)
|+++++-+.+-.. ..|. |+.++|+.
T Consensus 7 DdelY~YIas~t~-~igE-saSdiLRR 31 (50)
T 1xrx_A 7 DDELYSYIASHTK-HIGE-SASDILRR 31 (50)
T ss_dssp CHHHHHHHHTTCS-STTC-CHHHHHHH
T ss_pred cHHHHHHHHHhch-hhcc-CHHHHHHH
Confidence 6778888887778 8888 99998874
No 32
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=29.84 E-value=38 Score=20.14 Aligned_cols=43 Identities=19% Similarity=0.043 Sum_probs=25.7
Q ss_pred HHHHHHhCCCCcc---ceeccccCCchHHHHHHHHHHHhhCCCCHHHHHH
Q psy2439 9 LKVLKKAGCKVSC---FNTHHIYPDIYMPDLATACASVIEGDLTSEYFME 55 (146)
Q Consensus 9 ~~i~~~a~~~~~~---f~~~~~Y~d~~~~~Lv~a~~~~~~g~~~~~~~l~ 55 (146)
.++-+++|++... +..... .......+..+|+ .+|+ ++++++.
T Consensus 31 ~~lA~~~gis~~~is~~E~g~~--~~p~~~~l~~ia~-~l~v-~~~~l~~ 76 (86)
T 2ofy_A 31 VTVAFDAGISVETLRKIETGRI--ATPAFFTIAAVAR-VLDL-SLDDVAA 76 (86)
T ss_dssp HHHHHHHTCCHHHHHHHHTTCC--SSCBHHHHHHHHH-HTTC-CHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHcCCC--CCCCHHHHHHHHH-HhCC-CHHHHhc
Confidence 4566677776432 222222 0234566778888 8888 8888764
No 33
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=29.35 E-value=13 Score=21.65 Aligned_cols=44 Identities=5% Similarity=-0.167 Sum_probs=24.1
Q ss_pred HHHHHHhCCCCccceeccccCCchHHHHHHHHHHHhhCCCCHHHHH
Q psy2439 9 LKVLKKAGCKVSCFNTHHIYPDIYMPDLATACASVIEGDLTSEYFM 54 (146)
Q Consensus 9 ~~i~~~a~~~~~~f~~~~~Y~d~~~~~Lv~a~~~~~~g~~~~~~~l 54 (146)
.++-+.+|++...+.....=.-......+..+|+ .+|+ ++++++
T Consensus 25 ~~lA~~~gis~~~is~~e~g~~~~~~~~l~~ia~-~l~v-~~~~l~ 68 (73)
T 3omt_A 25 LWLTETLDKNKTTVSKWCTNDVQPSLETLFDIAE-ALNV-DVRELI 68 (73)
T ss_dssp HHHHHHTTCCHHHHHHHHTTSSCCCHHHHHHHHH-HHTS-CGGGGB
T ss_pred HHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHH-HHCc-CHHHHh
Confidence 3455666666322222111112235666778888 8888 887764
No 34
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=28.83 E-value=32 Score=21.07 Aligned_cols=19 Identities=11% Similarity=-0.102 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhhCCCCHHHHH
Q psy2439 34 PDLATACASVIEGDLTSEYFM 54 (146)
Q Consensus 34 ~~Lv~a~~~~~~g~~~~~~~l 54 (146)
...+..+|+ .+|+ ++++++
T Consensus 51 ~~~l~~ia~-~l~v-~~~~l~ 69 (94)
T 2kpj_A 51 MGKVQALAD-YFNI-NKSDLI 69 (94)
T ss_dssp HHHHHHHHH-HHTC-CTHHHH
T ss_pred HHHHHHHHH-HHCc-CHHHHh
Confidence 344455555 5555 555554
No 35
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=28.75 E-value=33 Score=21.91 Aligned_cols=50 Identities=6% Similarity=-0.100 Sum_probs=29.2
Q ss_pred HHHHHhCCCCccceeccccCCchHHHHHHHHHHHhhCCCCHHHHHHHHhhHH
Q psy2439 10 KVLKKAGCKVSCFNTHHIYPDIYMPDLATACASVIEGDLTSEYFMEFFGKCF 61 (146)
Q Consensus 10 ~i~~~a~~~~~~f~~~~~Y~d~~~~~Lv~a~~~~~~g~~~~~~~l~~fG~~~ 61 (146)
++-+++|++...+.....=.-......+..+|+ .+|+ ++++++..-+...
T Consensus 39 elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~-~l~v-~~~~l~~~~~~~~ 88 (114)
T 3vk0_A 39 ELARQCGLDRTYVSAVERKRWNIALSNIEKMAA-ALGV-AAYQLLLPPQERL 88 (114)
T ss_dssp HHHHHHTCCHHHHHHHTTTCCCCCHHHHHHHHH-HHTS-CHHHHTSCHHHHH
T ss_pred HHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHH-HhCC-CHHHHhCCccchh
Confidence 445555665322222211112346677888899 9999 9998876555443
No 36
>1xes_A Dihydropinosylvin synthase; native structure, transferase; HET: 3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A
Probab=27.87 E-value=43 Score=26.76 Aligned_cols=48 Identities=6% Similarity=0.002 Sum_probs=34.7
Q ss_pred HHHHHHHHHhCCCCcc----ceeccccCCchHHHHHHHHHHHhhCCCCHHHH------HHHHhhHH
Q psy2439 6 DVWLKVLKKAGCKVSC----FNTHHIYPDIYMPDLATACASVIEGDLTSEYF------MEFFGKCF 61 (146)
Q Consensus 6 ~~W~~i~~~a~~~~~~----f~~~~~Y~d~~~~~Lv~a~~~~~~g~~~~~~~------l~~fG~~~ 61 (146)
+.++++++++|+++ . |..|+. -.+++.++++ .+|+ |.+.+ ++.+|...
T Consensus 304 ~~i~~~L~~~gl~d-~~di~~v~Hq~-----~~~i~~~~~~-~Lgl-~~ek~~~s~~~l~~~GNts 361 (413)
T 1xes_A 304 NCMVEAFSQFKISD-WNKLFWVVHPG-----GRAILDRVEA-KLNL-DPTKLIPTRHVMSEYGNMS 361 (413)
T ss_dssp HHHHHHHGGGTCCC-GGGSEEEECCS-----CHHHHHHHHH-HTTC-CTTTTHHHHHHHHHHCBCG
T ss_pred HHHHHHHHhcCCCC-ccceeEEECCC-----CHHHHHHHHH-HcCC-ChHHhHHHHHHHHhcCcCc
Confidence 46778888889872 2 445544 4588999999 9999 98754 56677655
No 37
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=27.60 E-value=53 Score=18.72 Aligned_cols=22 Identities=18% Similarity=0.233 Sum_probs=16.8
Q ss_pred HHHHHHhhCCCCHHHHHHHHhhHH
Q psy2439 38 TACASVIEGDLTSEYFMEFFGKCF 61 (146)
Q Consensus 38 ~a~~~~~~g~~~~~~~l~~fG~~~ 61 (146)
..+|+ .+.. +++.++..|+.-+
T Consensus 15 ~~Ia~-~L~R-~p~hv~ky~~~EL 36 (52)
T 1k8b_A 15 RELAK-AVNR-DEEFFAKYLLKET 36 (52)
T ss_dssp HHHHH-HHHT-CHHHHHHHHHHHH
T ss_pred HHHHH-HHCC-CHHHHHHHHHHHh
Confidence 34666 6777 9999999888765
No 38
>3awk_A Chalcone synthase-like polyketide synthase; type III polyketide synthase, transferase; 2.00A {Huperzia serrata} PDB: 3awj_A
Probab=27.53 E-value=65 Score=25.58 Aligned_cols=48 Identities=13% Similarity=0.147 Sum_probs=34.5
Q ss_pred HHHHHHHHHhCCCCcc----ceeccccCCchHHHHHHHHHHHhhCCCCHHHH------HHHHhhHH
Q psy2439 6 DVWLKVLKKAGCKVSC----FNTHHIYPDIYMPDLATACASVIEGDLTSEYF------MEFFGKCF 61 (146)
Q Consensus 6 ~~W~~i~~~a~~~~~~----f~~~~~Y~d~~~~~Lv~a~~~~~~g~~~~~~~------l~~fG~~~ 61 (146)
+.++++++++|+++ . |..|+. =.+++.++++ .+|+ |.+.+ ++.+|...
T Consensus 294 ~~i~~~L~~~gl~d-~~di~~v~Hq~-----~~~i~~~~~~-~lgl-~~ek~~~s~~~l~~~GNts 351 (402)
T 3awk_A 294 KVLAEPLEYVHFPS-YNDMFWAVHPG-----GPAILDQIEA-KLGL-STDKMQASRDVLASYGNMS 351 (402)
T ss_dssp HHTHHHHHHTTCCC-GGGEEEEECCS-----CHHHHHHHHH-HTTC-CTTTTHHHHHHHHHHCBCG
T ss_pred HHHHHHHHhcCCCC-ccceeEEECCC-----cHHHHHHHHH-HcCC-CHHHHHHHHHHHHHcCCch
Confidence 56778889999872 2 444443 6778899999 9999 98753 56666655
No 39
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=27.17 E-value=49 Score=22.34 Aligned_cols=26 Identities=12% Similarity=0.009 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHhh
Q psy2439 32 YMPDLATACASVIEGDLTSEYFMEFFGK 59 (146)
Q Consensus 32 ~~~~Lv~a~~~~~~g~~~~~~~l~~fG~ 59 (146)
.....+..+|+ .+|. ++++++..+.+
T Consensus 108 ps~~~l~~la~-~lgv-~~~~l~~~~~~ 133 (141)
T 3kxa_A 108 LQDKTVQKLAN-ALGV-SPLEVRAAFER 133 (141)
T ss_dssp CCHHHHHHHHH-HHTC-CHHHHHHHHGG
T ss_pred CCHHHHHHHHH-HHCC-CHHHHHHHhhh
Confidence 35667788888 8899 99888876653
No 40
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=27.04 E-value=16 Score=21.21 Aligned_cols=44 Identities=7% Similarity=-0.024 Sum_probs=22.8
Q ss_pred HHHHHHhCCCCccceeccccCCchHHHHHHHHHHHhhCCCCHHHHH
Q psy2439 9 LKVLKKAGCKVSCFNTHHIYPDIYMPDLATACASVIEGDLTSEYFM 54 (146)
Q Consensus 9 ~~i~~~a~~~~~~f~~~~~Y~d~~~~~Lv~a~~~~~~g~~~~~~~l 54 (146)
.++.+.+|++...+.....=.-......+..+|+ .+|. |+++++
T Consensus 27 ~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~-~l~~-~~~~l~ 70 (76)
T 3bs3_A 27 RWLAEQMGKSENTISRWCSNKSQPSLDMLVKVAE-LLNV-DPRQLI 70 (76)
T ss_dssp HHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHHHH-HHTS-CGGGGB
T ss_pred HHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHH-HHCc-CHHHHh
Confidence 4555666666322221111111123555677788 8888 877664
No 41
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=26.49 E-value=67 Score=18.64 Aligned_cols=46 Identities=15% Similarity=0.052 Sum_probs=28.5
Q ss_pred HHHHHhCCCCc---cceeccccCC-chHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy2439 10 KVLKKAGCKVS---CFNTHHIYPD-IYMPDLATACASVIEGDLTSEYFMEFF 57 (146)
Q Consensus 10 ~i~~~a~~~~~---~f~~~~~Y~d-~~~~~Lv~a~~~~~~g~~~~~~~l~~f 57 (146)
++.+.+|++.. .+.....-|. +.+.+++.++++ .+|+ ++++++..-
T Consensus 28 ~lA~~~gis~~~i~~~e~g~~~~~~~~l~~~~~~l~~-~~~v-~~~~l~~~~ 77 (84)
T 2ef8_A 28 ELAIFLGLSQSDISKIESFERRLDALELFELLEVVAS-RLGL-PMDILLKDT 77 (84)
T ss_dssp HHHHHHTCCHHHHHHHHTTSSCCBHHHHHHHHHHHHH-HHTC-CHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHcc-ccCC-CHHHHHccc
Confidence 34455565532 2333332222 345788999999 9999 999988654
No 42
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=25.91 E-value=36 Score=22.62 Aligned_cols=27 Identities=7% Similarity=0.021 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHhhHH
Q psy2439 33 MPDLATACASVIEGDLTSEYFMEFFGKCF 61 (146)
Q Consensus 33 ~~~Lv~a~~~~~~g~~~~~~~l~~fG~~~ 61 (146)
+...+..+|+ .+|. ++++++..+....
T Consensus 50 ~~~~l~~ia~-~L~v-~~~~l~~~~~~~~ 76 (130)
T 3fym_A 50 SEGFIRKYAS-VVNI-EPNQLIQAHQDEI 76 (130)
T ss_dssp HHHHHHHHHH-HTTC-CHHHHHHHTTTTS
T ss_pred HHHHHHHHHH-HhCC-CHHHHHHHHHHhC
Confidence 3377889999 9999 9999998765443
No 43
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=25.78 E-value=20 Score=21.33 Aligned_cols=20 Identities=25% Similarity=0.019 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhhCCCCHHHHHH
Q psy2439 34 PDLATACASVIEGDLTSEYFME 55 (146)
Q Consensus 34 ~~Lv~a~~~~~~g~~~~~~~l~ 55 (146)
...+..+|+ .+|. +++++..
T Consensus 54 ~~~~~~ia~-~l~v-~~~~l~~ 73 (80)
T 3kz3_A 54 AYNAALLAK-ILKV-SVEEFSP 73 (80)
T ss_dssp HHHHHHHHH-HHTS-CGGGTCH
T ss_pred HHHHHHHHH-HhCC-CHHHHhH
Confidence 366777888 8888 8876544
No 44
>2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A {Mus musculus} PDB: 2dg2_A
Probab=25.56 E-value=72 Score=24.28 Aligned_cols=40 Identities=8% Similarity=-0.039 Sum_probs=33.9
Q ss_pred ccccCCchHHHHHHHHHHHhhCCCCHHHHHHHHhhHHHHHhh
Q psy2439 25 HHIYPDIYMPDLATACASVIEGDLTSEYFMEFFGKCFVRYFS 66 (146)
Q Consensus 25 ~~~Y~d~~~~~Lv~a~~~~~~g~~~~~~~l~~fG~~~v~~~~ 66 (146)
+..|+-+++.++=..+.+ ..|. |..++||..|+...+.+.
T Consensus 28 m~~~t~~qmr~iD~~a~~-~~Gi-~~~~LME~AG~ava~~i~ 67 (265)
T 2o8n_A 28 VKYLSQEEAQAVDQELFN-EYQF-SVDQLMELAGLSCATAIA 67 (265)
T ss_dssp CCCBCHHHHHHHHHHHHT-TTCC-CHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHH-HhCC-CHHHHHHHHHHHHHHHHH
Confidence 567888888888887878 8899 999999999999977663
No 45
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=25.34 E-value=1.3e+02 Score=18.69 Aligned_cols=79 Identities=14% Similarity=0.211 Sum_probs=42.1
Q ss_pred HHHHHHHhhCCCCHHHHHHHH----hhHHHHHhhhhhhHHHHHHHHHhhcHHHHHHHHHHhCCCCccceeeccCCCCChH
Q psy2439 37 ATACASVIEGDLTSEYFMEFF----GKCFVRYFSNLGIILAIAFQKLEYGDDVWLKVLKKAGCKVSCFNTHHIYPDIYMP 112 (146)
Q Consensus 37 v~a~~~~~~g~~~~~~~l~~f----G~~~v~~~~myG~i~~~~~v~~~~G~~~w~~il~~~~~~~~~~~~h~~Ypd~~~p 112 (146)
+..+|+ .+|+ |+..+-+.| |.-+..++...-+ +.-.+.+...+..........-|.| +.
T Consensus 24 ~~~lA~-~~~~-S~~~l~r~fk~~~G~s~~~~~~~~Rl-------------~~A~~lL~~~~~si~~IA~~~Gf~~--~s 86 (108)
T 3oou_A 24 LKTLGN-DFHI-NAVYLGQLFQKEMGEHFTDYLNRYRV-------------NYAKEELLQTKDNLTIIAGKSGYTD--MA 86 (108)
T ss_dssp HHHHHH-HHTS-CHHHHHHHHHHHHSSCHHHHHHHHHH-------------HHHHHHHHHCCCCHHHHHHHTTCCC--HH
T ss_pred HHHHHH-HHCc-CHHHHHHHHHHHHCcCHHHHHHHHHH-------------HHHHHHHHcCCCCHHHHHHHcCCCC--hH
Confidence 345667 7777 888776666 4444555554444 2222233222222111111113333 66
Q ss_pred HHHHHHHHHHhCCCCHHHHHHH
Q psy2439 113 DLATACASVIEGDLTSEYFMEF 134 (146)
Q Consensus 113 ~f~~~~s~~~~g~~~~~~~~~~ 134 (146)
.|..+--+ ..|. ||.+....
T Consensus 87 ~F~r~Fk~-~~G~-tP~~yR~~ 106 (108)
T 3oou_A 87 YFYRQFKK-HTGE-TPNRYRKI 106 (108)
T ss_dssp HHHHHHHH-HHSS-CHHHHHHH
T ss_pred HHHHHHHH-HhCc-CHHHHHHH
Confidence 78777888 8999 99887653
No 46
>3a5r_A Benzalacetone synthase; chalcone synthase, type III polyketide synthase, transferase, acyltransferase; HET: HC4; 1.60A {Rheum palmatum} PDB: 3a5q_A* 3a5s_A
Probab=25.28 E-value=63 Score=25.41 Aligned_cols=49 Identities=10% Similarity=0.102 Sum_probs=34.2
Q ss_pred HHHHHHHHHhCCCC-cc--ceeccccCCchHHHHHHHHHHHhhCCCCHHHH------HHHHhhHH
Q psy2439 6 DVWLKVLKKAGCKV-SC--FNTHHIYPDIYMPDLATACASVIEGDLTSEYF------MEFFGKCF 61 (146)
Q Consensus 6 ~~W~~i~~~a~~~~-~~--f~~~~~Y~d~~~~~Lv~a~~~~~~g~~~~~~~------l~~fG~~~ 61 (146)
+.++++++++|+++ .. |..|+. -.+++.++++ .+|+ |.+.+ ++.+|...
T Consensus 277 ~~i~~~L~~~gl~d~~di~~v~Hq~-----~~~i~~~~~~-~lgl-~~ek~~~s~~~l~~~GNts 334 (387)
T 3a5r_A 277 TCLSDAFTPLNISDWNSLFWIAHPG-----GPAILDQVTA-KVGL-EKEKLKVTRQVLKDYGNMS 334 (387)
T ss_dssp HHHHHHHGGGTCCCGGGSEEEECCS-----CHHHHHHHHH-HHTC-CGGGGHHHHHHHHHHCBCG
T ss_pred HHHHHHHHhcCCCChhheeEEECCC-----CHHHHHHHHH-HcCC-ChHHhHHHHHHHHhcCCcc
Confidence 56778888899872 11 445544 5588999999 9999 98754 45566544
No 47
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=24.90 E-value=50 Score=20.50 Aligned_cols=20 Identities=0% Similarity=0.082 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhhCCCCHHHHHH
Q psy2439 34 PDLATACASVIEGDLTSEYFME 55 (146)
Q Consensus 34 ~~Lv~a~~~~~~g~~~~~~~l~ 55 (146)
...+..+|+ .+|+ +++.++.
T Consensus 44 ~~~l~~ia~-~l~v-~~~~l~~ 63 (111)
T 1b0n_A 44 IQFLEKVSA-VLDV-SVHTLLD 63 (111)
T ss_dssp HHHHHHHHH-HHTC-CHHHHHC
T ss_pred HHHHHHHHH-HHCc-CHHHHhc
Confidence 455566666 6777 7666653
No 48
>4ewp_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; transferase; 2.20A {Micrococcus luteus nctc 2665}
Probab=24.01 E-value=2e+02 Score=21.86 Aligned_cols=42 Identities=19% Similarity=0.059 Sum_probs=28.3
Q ss_pred HHHHHHHHhCCCC--cc-ceeeccCCCCChHHHHHHHHHHHhCCCCH
Q psy2439 85 VWLKVLKKAGCKV--SC-FNTHHIYPDIYMPDLATACASVIEGDLTS 128 (146)
Q Consensus 85 ~w~~il~~~~~~~--~~-~~~h~~Ypd~~~p~f~~~~s~~~~g~~~~ 128 (146)
.-.+.+++++++. +. .......||...|+..+.+.+ .+|. +.
T Consensus 69 Aa~~aL~~ag~~~~dId~li~~t~t~~~~~P~~a~~v~~-~LGl-~~ 113 (350)
T 4ewp_A 69 AAREALERAGLQGSDLDAVIVSTVTFPHATPSAAALVAH-EIGA-TP 113 (350)
T ss_dssp HHHHHHHHTTCCGGGCSEEEEECSCCSCSSSCHHHHHHH-HTTC-TT
T ss_pred HHHHHHHHcCCCHHHCCEEEEEeccCCCCCCchHHHHHH-HhCC-CC
Confidence 3445666666654 22 222347788889999999999 9998 64
No 49
>1ee0_A 2-pyrone synthase; polyketide synthase, thiolase fold, transferase; HET: CAA; 2.05A {Gerbera hybrid cultivar} SCOP: c.95.1.2 c.95.1.2 PDB: 1qlv_A
Probab=23.56 E-value=90 Score=24.70 Aligned_cols=49 Identities=10% Similarity=0.064 Sum_probs=34.5
Q ss_pred HHHHHHHHHhCCCC-cc--ceeccccCCchHHHHHHHHHHHhhCCCCHHHH------HHHHhhHH
Q psy2439 6 DVWLKVLKKAGCKV-SC--FNTHHIYPDIYMPDLATACASVIEGDLTSEYF------MEFFGKCF 61 (146)
Q Consensus 6 ~~W~~i~~~a~~~~-~~--f~~~~~Y~d~~~~~Lv~a~~~~~~g~~~~~~~------l~~fG~~~ 61 (146)
+.++++++++|+++ .. |..|+. -.+++.++++ .+|+ |.+.+ ++.+|...
T Consensus 286 ~~i~~~L~~~gl~d~~di~~v~Hq~-----~~~i~~~~~~-~lgl-~~ek~~~s~~~l~~~GNts 343 (402)
T 1ee0_A 286 NAAEKALSPLGITDWNSVFWMVHPG-----GRAILDQVER-KLNL-KEDKLRASRHVLSEYGNLI 343 (402)
T ss_dssp HHHHHHHGGGTCCCGGGSEEEECCS-----SHHHHHHHHH-HTTC-CTTTTHHHHHHHHHHCBCG
T ss_pred HHHHHHHHHcCCCccccceEEECCC-----CHHHHHHHHH-HcCC-ChHHhHHHHHHHHhcCCch
Confidence 56788889999872 11 445544 5688999999 9999 98753 45666544
No 50
>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0
Probab=23.56 E-value=2.1e+02 Score=21.29 Aligned_cols=56 Identities=5% Similarity=-0.061 Sum_probs=39.5
Q ss_pred HHHHHHHhCCCCccceecccc--------CCchHHHHHHHHHHHhhCCCCHHHHHHHHhhHHHHHh
Q psy2439 8 WLKVLKKAGCKVSCFNTHHIY--------PDIYMPDLATACASVIEGDLTSEYFMEFFGKCFVRYF 65 (146)
Q Consensus 8 W~~i~~~a~~~~~~f~~~~~Y--------~d~~~~~Lv~a~~~~~~g~~~~~~~l~~fG~~~v~~~ 65 (146)
..+++++.+++---++|-..| ....+...+..+|+ +.|+ |.+++.+...+-+.+++
T Consensus 179 ~~~~v~~ip~drlLlETD~P~~~~rg~~n~P~~v~~v~~~iA~-~~g~-~~ee~~~~~~~N~~~lf 242 (254)
T 3gg7_A 179 GAALIRSMPRDRVLTETDGPFLELDGQAALPWDVKSVVEGLSK-IWQI-PASEVERIVKENVSRLL 242 (254)
T ss_dssp HHHHHHHSCGGGEEECCCTTTSEETTEECCGGGHHHHHHHHHH-HHTS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCeEEEeCCCCccccCCCCCCHHHHHHHHHHHHH-HhCc-CHHHHHHHHHHHHHHHH
Confidence 345555555443344444444 23568899999999 9999 99999998888776665
No 51
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=23.52 E-value=59 Score=20.75 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=17.7
Q ss_pred chHHHHHHHHHHHhhCCCCHHHHHH
Q psy2439 31 IYMPDLATACASVIEGDLTSEYFME 55 (146)
Q Consensus 31 ~~~~~Lv~a~~~~~~g~~~~~~~l~ 55 (146)
......+..+|+ .+|. |++.++.
T Consensus 53 ~~s~~~~~kla~-~lgv-s~~~ll~ 75 (104)
T 3trb_A 53 SITADTALRLAK-FFGT-TPEFWLN 75 (104)
T ss_dssp CCCHHHHHHHHH-HHTC-CHHHHHH
T ss_pred CCCHHHHHHHHH-HHCc-CHHHHhC
Confidence 346677888889 9999 8887765
No 52
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=23.28 E-value=49 Score=20.87 Aligned_cols=21 Identities=5% Similarity=-0.195 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHH
Q psy2439 33 MPDLATACASVIEGDLTSEYFME 55 (146)
Q Consensus 33 ~~~Lv~a~~~~~~g~~~~~~~l~ 55 (146)
....+..+|+ .+|+ |+++++.
T Consensus 50 ~~~~l~~la~-~l~v-~~~~l~~ 70 (114)
T 3op9_A 50 DIEKLIRLAT-YFHL-SIDELVG 70 (114)
T ss_dssp CHHHHHHHHH-HHTC-CHHHHHT
T ss_pred CHHHHHHHHH-HhCC-CHHHHhc
Confidence 4455667777 8888 8877765
No 53
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=22.46 E-value=39 Score=21.86 Aligned_cols=22 Identities=9% Similarity=-0.041 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHH
Q psy2439 32 YMPDLATACASVIEGDLTSEYFME 55 (146)
Q Consensus 32 ~~~~Lv~a~~~~~~g~~~~~~~l~ 55 (146)
.....+..+|+ .+|+ |+++++.
T Consensus 52 p~~~~l~~ia~-~l~v-~~~~l~~ 73 (126)
T 3ivp_A 52 PSLQVLYDLVS-LLNV-SVDEFFL 73 (126)
T ss_dssp CCHHHHHHHHH-HHTC-CSHHHHS
T ss_pred CCHHHHHHHHH-HHCc-CHHHHhC
Confidence 34566777888 8888 8888765
No 54
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=22.43 E-value=40 Score=18.78 Aligned_cols=42 Identities=12% Similarity=0.151 Sum_probs=25.0
Q ss_pred HHHHHHhCCCCc---cceeccccCCchHHHHHHHHHHHhhCCCCHHHHHHH
Q psy2439 9 LKVLKKAGCKVS---CFNTHHIYPDIYMPDLATACASVIEGDLTSEYFMEF 56 (146)
Q Consensus 9 ~~i~~~a~~~~~---~f~~~~~Y~d~~~~~Lv~a~~~~~~g~~~~~~~l~~ 56 (146)
.++.+.+|++.. .+.....-+... +..+|+ .+|. +++.++..
T Consensus 18 ~~lA~~~gis~~~i~~~e~g~~~~~~~----l~~la~-~l~~-~~~~l~~~ 62 (69)
T 1r69_A 18 AELAQKVGTTQQSIEQLENGKTKRPRF----LPELAS-ALGV-SVDWLLNG 62 (69)
T ss_dssp HHHHHHHTSCHHHHHHHHTTSCSSCTT----HHHHHH-HTTC-CHHHHHHC
T ss_pred HHHHHHHCcCHHHHHHHHcCCCCCchH----HHHHHH-HHCc-CHHHHhCC
Confidence 345555666632 233333333332 677888 9999 99988754
No 55
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=22.05 E-value=19 Score=20.55 Aligned_cols=19 Identities=11% Similarity=-0.011 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhhCCCCHHHH
Q psy2439 33 MPDLATACASVIEGDLTSEYF 53 (146)
Q Consensus 33 ~~~Lv~a~~~~~~g~~~~~~~ 53 (146)
....+..+|+ .+|. +++++
T Consensus 51 ~~~~l~~la~-~l~v-~~~~l 69 (71)
T 2ewt_A 51 TVQRLAELAD-FYGV-PVQEL 69 (71)
T ss_dssp CHHHHHHHHH-HHTS-CGGGG
T ss_pred CHHHHHHHHH-HHCc-CHHHH
Confidence 3455667777 7777 77665
No 56
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=21.57 E-value=1.6e+02 Score=18.59 Aligned_cols=23 Identities=13% Similarity=0.004 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHH
Q psy2439 111 MPDLATACASVIEGDLTSEYFMEFF 135 (146)
Q Consensus 111 ~p~f~~~~s~~~~g~~~~~~~~~~f 135 (146)
...|....-+ ..|. ||.+....+
T Consensus 86 ~s~F~r~Fk~-~~G~-tP~~yr~~~ 108 (120)
T 3mkl_A 86 VSYFIYVFRN-YYGM-TPTEYQERS 108 (120)
T ss_dssp HHHHHHHHHH-HHSS-CHHHHHHHC
T ss_pred HHHHHHHHHH-HHCc-CHHHHHHHH
Confidence 6677777778 8999 998877654
No 57
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=21.51 E-value=67 Score=19.87 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHH
Q psy2439 33 MPDLATACASVIEGDLTSEYFME 55 (146)
Q Consensus 33 ~~~Lv~a~~~~~~g~~~~~~~l~ 55 (146)
....+..+|+ .+|. +++.++.
T Consensus 59 ~~~~l~~l~~-~l~v-~~~~ll~ 79 (104)
T 3cec_A 59 TVDIAIRLGK-ALGN-GPRLWLN 79 (104)
T ss_dssp CHHHHHHHHH-HHTS-CHHHHHH
T ss_pred CHHHHHHHHH-HHCc-CHHHHHh
Confidence 4556667777 7888 7776654
No 58
>3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A {Curcuma longa} PDB: 3ov3_A
Probab=21.00 E-value=58 Score=25.89 Aligned_cols=52 Identities=8% Similarity=-0.034 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhCCCC-ccceeccccCCchHHHHHHHHHHHhhCCCCHHHH------HHHHhhHH
Q psy2439 5 DDVWLKVLKKAGCKV-SCFNTHHIYPDIYMPDLATACASVIEGDLTSEYF------MEFFGKCF 61 (146)
Q Consensus 5 ~~~W~~i~~~a~~~~-~~f~~~~~Y~d~~~~~Lv~a~~~~~~g~~~~~~~------l~~fG~~~ 61 (146)
.+.++++++++|++. ... ..-+++-=.+++.++++ .+|+ |.+.+ ++.||...
T Consensus 280 ~~~i~~~L~~~gl~~~~di---~~v~Hq~n~~i~~~v~~-~Lgl-~~ek~~~s~~~l~~~GNts 338 (393)
T 3ov2_A 280 GRSLERALAPLGVREWNDV---FWVAHPGNWAIIDAIEA-KLQL-SPDKLSTARHVFTEYGNMQ 338 (393)
T ss_dssp HHHHHHHHGGGTCCSGGGS---EEEECCCCHHHHHHHHH-HHTC-CTTTTHHHHHHHHHHCBCG
T ss_pred HHHHHHHHHHcCCCcccCc---EEEECCCChHHHHHHHH-HcCC-CHHHHHHHHHHHHHhCChH
Confidence 467889999999874 321 12334446889999999 9999 98875 56677655
No 59
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=20.88 E-value=87 Score=18.50 Aligned_cols=32 Identities=13% Similarity=0.051 Sum_probs=24.1
Q ss_pred cceeccccCCchHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy2439 21 CFNTHHIYPDIYMPDLATACASVIEGDLTSEYFMEFF 57 (146)
Q Consensus 21 ~f~~~~~Y~d~~~~~Lv~a~~~~~~g~~~~~~~l~~f 57 (146)
.|.....||+... ...+|+ .+|+ +..+|...|
T Consensus 18 ~F~~~~~yp~~~~---r~~LA~-~l~L-terQVkvWF 49 (64)
T 1x2m_A 18 VFTAITKHPDEKR---LEGLSK-QLDW-DVRSIQRWF 49 (64)
T ss_dssp HHHTTCSSCCHHH---HHHHHH-HHCS-CHHHHHHHH
T ss_pred HHHHcCCCcCHHH---HHHHHH-HhCC-CHHHHHHHH
Confidence 5656677888765 445788 8999 999998765
No 60
>4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.35A {Burkholderia xenovorans}
Probab=20.83 E-value=98 Score=24.00 Aligned_cols=50 Identities=18% Similarity=0.137 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhCCCCc---cceeccccCCchHHHHHHHHHHHhhCCCCHHHH---HHHHhhHH
Q psy2439 5 DDVWLKVLKKAGCKVS---CFNTHHIYPDIYMPDLATACASVIEGDLTSEYF---MEFFGKCF 61 (146)
Q Consensus 5 ~~~W~~i~~~a~~~~~---~f~~~~~Y~d~~~~~Lv~a~~~~~~g~~~~~~~---l~~fG~~~ 61 (146)
.+.++++++++|++.. .|..|+. -.+++.++++ .+|+ |.+.+ ++.+|...
T Consensus 247 ~~~i~~~l~~~gl~~~did~~v~Hq~-----~~~i~~~~~~-~Lgl-~~ek~~~~l~~~GNt~ 302 (354)
T 4efi_A 247 PKLVSRTLDIAGRDKDSYDAFLFHQA-----NLFMLKHLAK-KAGL-PAERVPVNIGEYGNTS 302 (354)
T ss_dssp HHHHHHHHHHHTCCGGGCSEEEECCC-----CHHHHHHHHH-HTTC-CGGGSCCCHHHHCBCG
T ss_pred HHHHHHHHHHcCCCHHHCCEEEeCCC-----CHHHHHHHHH-HhCc-CHHHHHHHHhhhCcHH
Confidence 4568899999998842 3555554 5678999999 9999 98874 45555443
No 61
>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.80A {Homo sapiens}
Probab=20.76 E-value=1.2e+02 Score=23.48 Aligned_cols=39 Identities=18% Similarity=0.077 Sum_probs=29.6
Q ss_pred ccccCCchHHHHHHHHHHHhhCCCCHHHHHHHHhhHHHHHhh
Q psy2439 25 HHIYPDIYMPDLATACASVIEGDLTSEYFMEFFGKCFVRYFS 66 (146)
Q Consensus 25 ~~~Y~d~~~~~Lv~a~~~~~~g~~~~~~~l~~fG~~~v~~~~ 66 (146)
+..|+-+++.++=.++ + ..|. |..++||..|+...+.+.
T Consensus 77 ~~~~t~~qmr~~d~~~-~-~~Gi-~~~~LME~AG~ava~~i~ 115 (306)
T 3d3j_A 77 VPSISYELHKKLLSVA-E-KHGL-TLERRLEMTGVCASQMAL 115 (306)
T ss_dssp EECCCHHHHHHHHHHH-H-HTTC-CHHHHHHHHHHHHHHHHH
T ss_pred eeecCHHHHHHHHHHH-H-HhCC-CHHHHHHHHHHHHHHHHH
Confidence 3556666666666655 7 8899 999999999998877653
No 62
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=20.73 E-value=55 Score=20.80 Aligned_cols=27 Identities=22% Similarity=0.100 Sum_probs=22.8
Q ss_pred chHHHHHHHHHHHhhCCCCHHHHHHHHhh
Q psy2439 31 IYMPDLATACASVIEGDLTSEYFMEFFGK 59 (146)
Q Consensus 31 ~~~~~Lv~a~~~~~~g~~~~~~~l~~fG~ 59 (146)
+....|++.+|. .-|. +.-++.+.||-
T Consensus 55 D~gq~L~g~iA~-~rgv-~~~~v~~e~g~ 81 (85)
T 3viq_B 55 DIALGMIGKVAE-HEKC-TSVELFDRFGV 81 (85)
T ss_dssp HHHHHHHHHHHH-HTTS-CGGGGHHHHTC
T ss_pred HHHHHHHHHHHH-HcCC-cHHHHHHHhCC
Confidence 356788999999 9999 99999999884
No 63
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=20.56 E-value=25 Score=21.96 Aligned_cols=43 Identities=9% Similarity=-0.062 Sum_probs=25.2
Q ss_pred HHHHHHhCCCCccceeccccCCchHHHHHHHHHHHhhCCCCHHHHH
Q psy2439 9 LKVLKKAGCKVSCFNTHHIYPDIYMPDLATACASVIEGDLTSEYFM 54 (146)
Q Consensus 9 ~~i~~~a~~~~~~f~~~~~Y~d~~~~~Lv~a~~~~~~g~~~~~~~l 54 (146)
.++.+++|++......... ........+..+|+ .+|. ++++++
T Consensus 41 ~eLA~~~GiS~~tis~iE~-G~~~s~~~l~kIa~-~L~v-~~~~L~ 83 (88)
T 3t76_A 41 GELREAVGVSKSTFAKLGK-NENVSLTVLLAICE-YLNC-DFGDII 83 (88)
T ss_dssp HHHHHHHTCCHHHHHHHHT-TCCCCHHHHHHHHH-HHTC-CGGGTC
T ss_pred HHHHHHHCcCHHHHHHHHc-CCCcCHHHHHHHHH-HHCc-CHHHHh
Confidence 3455666766422221111 11236677888899 9999 888775
No 64
>1jzt_A Hypothetical 27.5 kDa protein in SPX19-GCR2 inter region; yeast hypothetical protein, structural genomics, selenomethi PSI; 1.94A {Saccharomyces cerevisiae} SCOP: c.104.1.1
Probab=20.35 E-value=81 Score=23.56 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=31.5
Q ss_pred ccccCCchHHHHHHHHHHHh-hCCCCHHHHHHHHhhHHHHHhh
Q psy2439 25 HHIYPDIYMPDLATACASVI-EGDLTSEYFMEFFGKCFVRYFS 66 (146)
Q Consensus 25 ~~~Y~d~~~~~Lv~a~~~~~-~g~~~~~~~l~~fG~~~v~~~~ 66 (146)
+..|+-+++.++=..+.+ . .|. |..++||..|+...+.+.
T Consensus 4 m~~~t~~qmr~~d~~a~~-~~~gi-~~~~LME~Ag~ava~~i~ 44 (246)
T 1jzt_A 4 LKVVSSKLAAEIDKELMG-PQIGF-TLQQLMELAGFSVAQAVC 44 (246)
T ss_dssp CCCCCHHHHHHHHHHHTS-TTTCC-CHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHh-hhcCc-CHHHHHHHHHHHHHHHHH
Confidence 356677777777776766 6 799 999999999999977663
No 65
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=20.07 E-value=76 Score=19.90 Aligned_cols=43 Identities=7% Similarity=0.126 Sum_probs=26.1
Q ss_pred HHHHHHhCCCCcc---ceeccccCCchHHHHHHHHHHHhhCCCCHHHHHHH
Q psy2439 9 LKVLKKAGCKVSC---FNTHHIYPDIYMPDLATACASVIEGDLTSEYFMEF 56 (146)
Q Consensus 9 ~~i~~~a~~~~~~---f~~~~~Y~d~~~~~Lv~a~~~~~~g~~~~~~~l~~ 56 (146)
.++.+.+|++... +...... .....+..+|+ .+|. +++.++..
T Consensus 28 ~~lA~~~gis~~~is~~e~g~~~---~~~~~l~~la~-~l~~-~~~~l~~~ 73 (113)
T 2eby_A 28 NELAELLHVHRNSVSALINNNRK---LTTEMAFRLAK-VFDT-TVDFWLNL 73 (113)
T ss_dssp HHHHHHHTSCHHHHHHHHTTSSC---CCHHHHHHHHH-HHTC-CHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcCCCC---CCHHHHHHHHH-HHCc-CHHHHHcc
Confidence 3555666666432 2222222 34567778899 9999 99877653
Done!