RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2439
         (146 letters)



>d1u55a_ d.278.1.1 (A:) Methyl-accepting chemotaxis protein
           {Thermoanaerobacter tengcongensis [TaxId: 119072]}
          Length = 188

 Score = 57.1 bits (138), Expect = 1e-11
 Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 5/80 (6%)

Query: 69  GIILA--IAFQKLEYGDDVWLKVLKKAGCKVSC-FNTHHIYPDIYMPDLATACASVIEGD 125
           G I+   I   +  YG+DV  + LK  G +            D  +  +    +      
Sbjct: 3   GTIVGTWIKTLRDLYGNDVVDESLKSVGWEPDRVITPLEDIDDDEVRRIFAKVSEKT--G 60

Query: 126 LTSEYFMEFFGKCFVRYFSN 145
                     G+  ++ FS 
Sbjct: 61  KNVNEIWREVGRQNIKTFSE 80



 Score = 56.0 bits (135), Expect = 4e-11
 Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 3/66 (4%)

Query: 3  YGDDVWLKVLKKAGCKVSC-FNTHHIYPDIYMPDLATACASVIEGDLTSEYFMEFFGKCF 61
          YG+DV  + LK  G +            D  +  +    +                G+  
Sbjct: 17 YGNDVVDESLKSVGWEPDRVITPLEDIDDDEVRRIFAKVSEKT--GKNVNEIWREVGRQN 74

Query: 62 VRYFSN 67
          ++ FS 
Sbjct: 75 IKTFSE 80


>d1jqlb_ c.37.1.20 (B:) delta subunit of DNA polymerase III,
           N-domain {Escherichia coli [TaxId: 562]}
          Length = 140

 Score = 29.2 bits (65), Expect = 0.094
 Identities = 18/118 (15%), Positives = 33/118 (27%), Gaps = 23/118 (19%)

Query: 3   YGDDVWL---------KVLKKAGCKVSCFNTHHIYPDIYMPDLATACAS--------VIE 45
            G+D  L         +V    G      +T  I P+     + + C +         + 
Sbjct: 24  LGNDPLLLQESQDAVRQVAAAQGF--EEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLL 81

Query: 46  GDLTSEYFMEFFGKCFVRYFSNL--GIILAIAFQKLEYGD--DVWLKVLKKAGCKVSC 99
             L          +  +     L   ++L +   KL        W   L     +V+C
Sbjct: 82  LLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTC 139


>d1ogmx1 b.133.1.1 (X:3-201) Dextranase, N-terminal domain
           {Penicillium minioluteum [TaxId: 28574]}
          Length = 199

 Score = 25.8 bits (56), Expect = 1.7
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 69  GIILAIAFQKLEYGDDVWLKVLKKAGCKVSCFNTHHIYPDIY 110
            I L +A+ + EY  DV +K+L   G  +   +   I P   
Sbjct: 92  SIGLNMAWSQFEYSHDVDVKILATDGSSLGSPSDVVIRPVSI 133


>d2daqa1 b.34.9.2 (A:8-104) Histone-lysine N-methyltransferase NSD3
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 97

 Score = 23.4 bits (50), Expect = 6.8
 Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 11/59 (18%)

Query: 78  KLEYGDDVWLKVLKKAGCKVSCFNTHHIYPDIYMPDLATACASVIEGDLTSEYFMEFFG 136
           KL Y   VW+K+             +  +P       +             ++ + FFG
Sbjct: 1   KLHYKQIVWVKL-----------GNYRWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFG 48


>d1gyoa_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio gigas,
          di-tetraheme cytochrome c3 [TaxId: 879]}
          Length = 106

 Score = 23.6 bits (50), Expect = 7.3
 Identities = 7/37 (18%), Positives = 11/37 (29%)

Query: 18 KVSCFNTHHIYPDIYMPDLATACASVIEGDLTSEYFM 54
           VSC + HH++           C    +       F 
Sbjct: 33 NVSCVSCHHMFDGCGDFQKCADCHIDRDDRSYERGFY 69



 Score = 23.6 bits (50), Expect = 7.3
 Identities = 7/37 (18%), Positives = 11/37 (29%)

Query: 96  KVSCFNTHHIYPDIYMPDLATACASVIEGDLTSEYFM 132
            VSC + HH++           C    +       F 
Sbjct: 33  NVSCVSCHHMFDGCGDFQKCADCHIDRDDRSYERGFY 69


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.144    0.472 

Gapped
Lambda     K      H
   0.267   0.0414    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 616,177
Number of extensions: 27306
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 16
Length of query: 146
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 69
Effective length of database: 1,350,386
Effective search space: 93176634
Effective search space used: 93176634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 49 (23.5 bits)