Query psy2440
Match_columns 60
No_of_seqs 118 out of 1025
Neff 8.1
Searched_HMMs 29240
Date Sat Aug 17 00:59:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2440.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2440hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ab8_A Adenylyl cyclase; lyase 99.7 2.4E-17 8.2E-22 98.4 7.2 59 2-60 62-131 (220)
2 3uvj_A Guanylate cyclase solub 99.7 4.1E-17 1.4E-21 97.6 5.0 59 2-60 55-113 (225)
3 3et6_A Soluble guanylyl cyclas 99.7 8.2E-17 2.8E-21 93.7 5.8 59 2-60 51-109 (190)
4 1azs_A VC1; complex (lyase/hyd 99.7 2.6E-16 8.9E-21 94.4 6.7 58 3-60 76-133 (220)
5 2wz1_A Guanylate cyclase solub 99.6 1.6E-16 5.5E-21 94.9 4.9 58 2-60 60-117 (219)
6 1yk9_A Adenylate cyclase; beta 99.6 1.9E-16 6.4E-21 93.6 4.0 59 2-60 51-109 (204)
7 2w01_A Adenylate cyclase; guan 99.6 1.4E-14 4.8E-19 85.5 7.3 59 2-60 55-117 (208)
8 3r5g_A CYAB; adenylyl cyclase, 99.5 9.5E-14 3.3E-18 81.0 6.6 58 3-60 51-115 (198)
9 1wc3_A Adenylate cyclase; solu 99.4 3.1E-13 1.1E-17 80.5 7.1 58 3-60 69-138 (219)
10 1y10_A Hypothetical protein RV 99.3 1.5E-12 5.2E-17 84.0 5.8 48 2-60 255-302 (407)
11 3mr7_A Adenylate/guanylate cyc 99.3 6.9E-12 2.4E-16 72.9 6.1 52 2-60 48-101 (189)
12 1fx2_A Receptor-type adenylate 99.2 5.1E-11 1.8E-15 71.0 6.2 36 2-44 52-87 (235)
13 1ybt_A Hydrolase, alpha/beta h 99.1 3.9E-11 1.4E-15 69.8 3.7 46 2-60 58-103 (184)
14 2vik_A Villin 14T; actin-bindi 61.3 16 0.00056 19.7 4.0 43 9-57 40-97 (126)
15 3cip_G Gelsolin; actin, dictyo 56.2 22 0.00076 19.2 4.5 43 9-57 42-100 (128)
16 2ff3_A Gelsolin; protein-prote 55.3 26 0.00087 19.6 4.6 43 9-57 61-119 (150)
17 1t44_G Chimera of gelsolin dom 54.1 26 0.0009 19.4 4.6 34 9-42 39-88 (147)
18 3tu5_B Gelsolin, protein cordo 43.8 50 0.0017 20.4 4.6 34 9-42 57-106 (297)
19 2c92_A 6,7-dimethyl-8-ribityll 40.5 50 0.0017 18.7 4.2 23 25-47 136-158 (160)
20 4hoy_A PTH, peptidyl-tRNA hydr 38.7 14 0.00047 21.6 1.4 10 51-60 128-137 (193)
21 2pth_A Peptidyl-tRNA hydrolase 37.0 15 0.00052 21.4 1.4 10 51-60 128-137 (193)
22 2qv6_A MJ0145, GTP cyclohydrol 36.9 47 0.0016 20.3 3.6 9 11-19 182-190 (268)
23 4fyj_A PTH, peptidyl-tRNA hydr 36.5 16 0.00054 21.5 1.4 10 51-60 136-145 (199)
24 2z2i_A PTH, peptidyl-tRNA hydr 36.0 16 0.00055 21.3 1.4 10 51-60 129-138 (191)
25 3unf_N Proteasome subunit beta 34.9 40 0.0014 18.8 3.0 19 3-21 30-49 (199)
26 3nea_A PTH, peptidyl-tRNA hydr 33.8 18 0.00063 21.4 1.4 10 51-60 148-157 (207)
27 3v2i_A PTH, peptidyl-tRNA hydr 32.9 52 0.0018 19.6 3.3 10 51-60 148-157 (222)
28 1ryb_A CRS2; alpha-beta, hydro 32.6 18 0.00061 21.4 1.2 10 51-60 142-151 (205)
29 3o10_A Sacsin; all-helical dom 30.9 26 0.00089 19.0 1.7 23 24-46 115-137 (141)
30 1iru_J 20S proteasome; cell cy 27.8 52 0.0018 18.4 2.7 19 3-21 38-57 (205)
31 1iru_N 20S proteasome; cell cy 27.7 73 0.0025 18.0 3.3 20 2-21 37-57 (219)
32 1j72_A Macrophage capping prot 26.1 1.2E+02 0.0041 18.6 5.5 13 9-21 43-55 (347)
33 1hqk_A 6,7-dimethyl-8-ribityll 25.5 72 0.0025 17.9 2.9 20 26-45 134-153 (154)
34 4fno_A PTH, peptidyl-tRNA hydr 30.4 16 0.00054 21.4 0.0 9 52-60 131-139 (194)
35 1ufb_A TT1696 protein; structu 23.4 86 0.0029 16.1 3.2 22 23-44 104-125 (127)
36 1rvv_A Riboflavin synthase; tr 22.2 87 0.003 17.5 2.8 20 26-45 134-153 (154)
37 2obx_A DMRL synthase 1, 6,7-di 22.1 92 0.0032 17.5 2.9 20 27-46 137-156 (157)
38 3nq4_A 6,7-dimethyl-8-ribityll 21.6 78 0.0027 17.8 2.5 21 26-46 135-155 (156)
39 1c2y_A Protein (lumazine synth 21.5 96 0.0033 17.4 2.9 21 26-46 134-154 (156)
40 3fg6_A Adseverin, scinderin; C 20.6 1.7E+02 0.0057 18.4 5.5 10 9-18 76-85 (371)
41 1g3k_A ATP-dependent protease 20.2 89 0.003 17.1 2.6 20 2-21 29-50 (174)
42 1g0u_M Proteasome component PR 20.2 1.2E+02 0.0039 18.0 3.2 20 2-21 70-90 (266)
43 1di0_A Lumazine synthase; tran 20.0 1.1E+02 0.0036 17.2 2.8 20 27-46 136-155 (158)
No 1
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK; 2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B* 1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B* 2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B* 3maa_B* 1cul_B*
Probab=99.71 E-value=2.4e-17 Score=98.38 Aligned_cols=59 Identities=17% Similarity=0.408 Sum_probs=53.4
Q ss_pred CCceEEeeeCcEEEEEeCCCC-----------CCchhHHHHHHHHHHHHHHHHHhhcCCCCceEEEEecC
Q psy2440 2 KIMRQVETVGQVYMAVSGAPE-----------ETPHHACNISDLSLSFIETVENMKEGSDNNIQIRIDEG 60 (60)
Q Consensus 2 ~~v~KvktiGD~ym~~~Glp~-----------~~~~ha~~~~~~al~m~~~~~~~~~~~~~~~~iRIGi~ 60 (60)
.+++|+||+||+|||+||+|. ...+|+.+++++|++|++.+++++.....++++||||+
T Consensus 62 ~g~~~ik~iGD~~ma~fg~p~~~~~~~~~~~~~~~~~a~~a~~~Al~~~~~l~~~~~~~~~~l~~rIGIh 131 (220)
T 1ab8_A 62 SGVEKIKTIGSTYMAATGLSAIPSQEHAQEPERQYMHIGTMVEFAYALVGKLDAINKHSFNDFKLRVGIN 131 (220)
T ss_dssp TTEEEEEEETTEEEEEECCCCSCCC--------CCHHHHHHHHHHHHHHHHHHHHHTTTTCCCCCEEEEE
T ss_pred CCeEEEEEeCceEEEEECCCccccccccccccccHHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEE
Confidence 479999999999999999997 35689999999999999999999987778999999985
No 2
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural genomics, structural genomics conso SGC, CGMP biosynthesis; 2.08A {Homo sapiens}
Probab=99.68 E-value=4.1e-17 Score=97.63 Aligned_cols=59 Identities=25% Similarity=0.403 Sum_probs=55.5
Q ss_pred CCceEEeeeCcEEEEEeCCCCCCchhHHHHHHHHHHHHHHHHHhhcCCCCceEEEEecC
Q psy2440 2 KIMRQVETVGQVYMAVSGAPEETPHHACNISDLSLSFIETVENMKEGSDNNIQIRIDEG 60 (60)
Q Consensus 2 ~~v~KvktiGD~ym~~~Glp~~~~~ha~~~~~~al~m~~~~~~~~~~~~~~~~iRIGi~ 60 (60)
++.+++||+||+||++||+|.+..+|+.+++.+|++|++.+++++.+.+.++++||||+
T Consensus 55 ~~g~v~k~~GD~~ma~fg~p~~~~~~a~~a~~~al~~~~~~~~~~~~~~~~l~~riGih 113 (225)
T 3uvj_A 55 LDVYKVETIGDAYCVAGGLHKESDTHAVQIALMALKMMELSDEVMSPHGEPIKMRIGLH 113 (225)
T ss_dssp HTCEEECCSTTCEEEEESSSSCCTTHHHHHHHHHHHHHHHHTTSBCTTSCBCCEEEEEE
T ss_pred cCeEEEEeeCcEEEEEECCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCceEEEEEEE
Confidence 36799999999999999999999999999999999999999999988889999999985
No 3
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic, lyase, membrane, transmembrane; 2.55A {Chlamydomonas reinhardtii} PDB: 3et6_B
Probab=99.67 E-value=8.2e-17 Score=93.65 Aligned_cols=59 Identities=22% Similarity=0.357 Sum_probs=53.0
Q ss_pred CCceEEeeeCcEEEEEeCCCCCCchhHHHHHHHHHHHHHHHHHhhcCCCCceEEEEecC
Q psy2440 2 KIMRQVETVGQVYMAVSGAPEETPHHACNISDLSLSFIETVENMKEGSDNNIQIRIDEG 60 (60)
Q Consensus 2 ~~v~KvktiGD~ym~~~Glp~~~~~ha~~~~~~al~m~~~~~~~~~~~~~~~~iRIGi~ 60 (60)
.+.+++|++||+||++||+|.+..+|+.+++++|++|++.+++++.+.+.++++||||+
T Consensus 51 ~g~~~vk~~GD~~~a~fg~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~l~~riGi~ 109 (190)
T 3et6_A 51 PQLYKVETIGDAYMVVCNVTVPCDDHADVLLEFALRMHEEASRVASSLGEPVRIRVGMH 109 (190)
T ss_dssp TTEEEEECTTSCEEEEESSSSCCSTHHHHHHHHHHHHHHHHHTSCCC---CCCEEEEEE
T ss_pred CCEEEEEEeCCEEEEEECCCCCchhHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEE
Confidence 47899999999999999999999999999999999999999998888788999999985
No 4
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A* 1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A* 3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A* 1tl7_A*
Probab=99.65 E-value=2.6e-16 Score=94.40 Aligned_cols=58 Identities=24% Similarity=0.462 Sum_probs=54.0
Q ss_pred CceEEeeeCcEEEEEeCCCCCCchhHHHHHHHHHHHHHHHHHhhcCCCCceEEEEecC
Q psy2440 3 IMRQVETVGQVYMAVSGAPEETPHHACNISDLSLSFIETVENMKEGSDNNIQIRIDEG 60 (60)
Q Consensus 3 ~v~KvktiGD~ym~~~Glp~~~~~ha~~~~~~al~m~~~~~~~~~~~~~~~~iRIGi~ 60 (60)
+.+++||+||+||++||+|.+.++|+.+++++|++|++.+++++...+.++++||||+
T Consensus 76 gG~v~k~iGD~~ma~fg~p~~~~~~a~~Av~~Al~m~~~l~~~~~~~~~~l~irIGI~ 133 (220)
T 1azs_A 76 HCLRIKILGDCYYCVSGLPEARADHAHCCVEMGMDMIEAISLVREMTGVNVNMRVGIH 133 (220)
T ss_dssp TEEEEEEETTEEEEEESCSSCCSTHHHHHHHHHHHHHHHHHHHHHHHCSCCEEEEEEE
T ss_pred CcEEEEEeCCeEEEEECCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEE
Confidence 5789999999999999999999999999999999999999998876678999999985
No 5
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1, metal-binding, CGMP biosynthesis, nucleotide-B cyclase, GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Probab=99.64 E-value=1.6e-16 Score=94.89 Aligned_cols=58 Identities=38% Similarity=0.568 Sum_probs=53.4
Q ss_pred CCceEEeeeCcEEEEEeCCCCCCchhHHHHHHHHHHHHHHHHHhhcCCCCceEEEEecC
Q psy2440 2 KIMRQVETVGQVYMAVSGAPEETPHHACNISDLSLSFIETVENMKEGSDNNIQIRIDEG 60 (60)
Q Consensus 2 ~~v~KvktiGD~ym~~~Glp~~~~~ha~~~~~~al~m~~~~~~~~~~~~~~~~iRIGi~ 60 (60)
++++|+||+||+||++||+|.+.++|+.+++++|++|++.+++++.. ..++++||||+
T Consensus 60 ~~g~~~k~~GD~~ma~fg~p~~~~~~a~~A~~~Al~~~~~~~~~~~~-~~~l~~rIGi~ 117 (219)
T 2wz1_A 60 PFVYKVETVGDKYMTVSGLPEPCIHHARSICHLALDMMEIAGQVQVD-GESVQITIGIH 117 (219)
T ss_dssp TTCEEECCCTTCEEEEESSSSCCTTHHHHHHHHHHHHHHHHTTCEET-TEECCEEEEEE
T ss_pred CCEEEEeecCCEEEEEECCCCCChhHHHHHHHHHHHHHHHHHHHhcc-CCceEEEEEEE
Confidence 47899999999999999999999999999999999999999988754 67899999985
No 6
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics, PSI, protein structure initiative; 2.70A {Mycobacterium tuberculosis}
Probab=99.63 E-value=1.9e-16 Score=93.64 Aligned_cols=59 Identities=25% Similarity=0.548 Sum_probs=55.3
Q ss_pred CCceEEeeeCcEEEEEeCCCCCCchhHHHHHHHHHHHHHHHHHhhcCCCCceEEEEecC
Q psy2440 2 KIMRQVETVGQVYMAVSGAPEETPHHACNISDLSLSFIETVENMKEGSDNNIQIRIDEG 60 (60)
Q Consensus 2 ~~v~KvktiGD~ym~~~Glp~~~~~ha~~~~~~al~m~~~~~~~~~~~~~~~~iRIGi~ 60 (60)
++.+++|++||+||++||+|.+.++|+.+++++|++|++.+++++.+.+.++++||||+
T Consensus 51 ~gG~v~k~~GD~~ma~fg~p~~~~~~a~~A~~~Al~~~~~~~~~~~~~~~~l~~rIGI~ 109 (204)
T 1yk9_A 51 HGLEKIEVSGDSYMVVSGVPRPRPDHTQALADFALDMTNVAAQLKDPRGNPVPLRVGLA 109 (204)
T ss_dssp SSCEECCCSSSCEEEESCCSSCCTTHHHHHHTHHHHHHHHTTTCCSSSCCCCCEEEEEE
T ss_pred cCCEEEEEeCCeEEEEECCCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEE
Confidence 46789999999999999999999999999999999999999999988788999999985
No 7
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase, lyase; 2.31A {Synechocystis SP}
Probab=99.56 E-value=1.4e-14 Score=85.52 Aligned_cols=59 Identities=12% Similarity=0.121 Sum_probs=51.9
Q ss_pred CCceEEeeeCcEEEEEeCCCCCCchhHHHHHHHHHHHHHHHHHhhcC----CCCceEEEEecC
Q psy2440 2 KIMRQVETVGQVYMAVSGAPEETPHHACNISDLSLSFIETVENMKEG----SDNNIQIRIDEG 60 (60)
Q Consensus 2 ~~v~KvktiGD~ym~~~Glp~~~~~ha~~~~~~al~m~~~~~~~~~~----~~~~~~iRIGi~ 60 (60)
++.+++|++||+||++||+|.+.++|+.+++++|++|++.+++++.. ...++++||||+
T Consensus 55 ~~G~v~k~~GD~~~a~fg~p~~~~~~a~~Av~~Al~~~~~l~~~~~~~~~~~~~~l~~riGi~ 117 (208)
T 2w01_A 55 HGGTIDEFMGDGILVLFGAPTSQQDDALRAVACGVEMQLALREVNQQVTGLGLQPLEMGIGIN 117 (208)
T ss_dssp TTCEEEEEETTEEEEEESSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCEEEEE
T ss_pred cCCEEEEEEcCEEEEEECCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEE
Confidence 35689999999999999999999999999999999999999987743 236899999985
No 8
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa} SCOP: d.58.29.0
Probab=99.48 E-value=9.5e-14 Score=80.98 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=50.1
Q ss_pred CceEEeeeCcEEEEEeCCCCCC--chhHHHHHHHHHHHHHHHHHhhcCC-----CCceEEEEecC
Q psy2440 3 IMRQVETVGQVYMAVSGAPEET--PHHACNISDLSLSFIETVENMKEGS-----DNNIQIRIDEG 60 (60)
Q Consensus 3 ~v~KvktiGD~ym~~~Glp~~~--~~ha~~~~~~al~m~~~~~~~~~~~-----~~~~~iRIGi~ 60 (60)
+.+++|++||+||++||+|... .+|+.+++.+|++|++.++.++..+ ..++++||||+
T Consensus 51 ~G~v~k~~GD~~~a~fg~p~~~~~~~~a~~a~~~al~i~~~~~~~~~~~~~~~~~~~l~~riGi~ 115 (198)
T 3r5g_A 51 GGTIDKFVGDCVMVFFGDPSTQGAKKDAVAAVSMGIAMRKHMKVLRQQWRAQGITKPLEIRMGIN 115 (198)
T ss_dssp TCEEEEEETTEEEEEESSSSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCCEEEEEEE
T ss_pred CCEEEeeeCCEEEEEECCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEE
Confidence 4588999999999999999876 5899999999999999998876532 36899999985
No 9
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase; HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1 PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Probab=99.45 E-value=3.1e-13 Score=80.46 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=49.1
Q ss_pred CceEEeeeCcEEEEEeCCCCCC--chhHHHHHHHHHHHHHHHHHhhcC----------CCCceEEEEecC
Q psy2440 3 IMRQVETVGQVYMAVSGAPEET--PHHACNISDLSLSFIETVENMKEG----------SDNNIQIRIDEG 60 (60)
Q Consensus 3 ~v~KvktiGD~ym~~~Glp~~~--~~ha~~~~~~al~m~~~~~~~~~~----------~~~~~~iRIGi~ 60 (60)
+-+.+|++||+||++||+|... .+|+.+++++|++|++.+++++.. ...++++||||+
T Consensus 69 gG~v~k~iGD~~ma~fg~p~~~~~~~~a~~Av~~Al~~~~~l~~~~~~~~~~~~~~~~~~~~l~~rIGIh 138 (219)
T 1wc3_A 69 QGTVDKFVGDAIMALYGAPEEMSPSEQVRRAIATARQMLVALEKLNQGWQERGLVGRNEVPPVRFRCGIH 138 (219)
T ss_dssp TCEEEEEETTEEEEEESSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTCCCCEEEEEEE
T ss_pred CCEEEEEEcCeEEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCccEEEEEEE
Confidence 4578899999999999999764 478999999999999999887742 236899999985
No 10
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase; HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB: 1y11_A*
Probab=99.34 E-value=1.5e-12 Score=84.00 Aligned_cols=48 Identities=23% Similarity=0.330 Sum_probs=41.7
Q ss_pred CCceEEeeeCcEEEEEeCCCCCCchhHHHHHHHHHHHHHHHHHhhcCCCCceEEEEecC
Q psy2440 2 KIMRQVETVGQVYMAVSGAPEETPHHACNISDLSLSFIETVENMKEGSDNNIQIRIDEG 60 (60)
Q Consensus 2 ~~v~KvktiGD~ym~~~Glp~~~~~ha~~~~~~al~m~~~~~~~~~~~~~~~~iRIGi~ 60 (60)
++++|+|||||+|||+||+|. +++++|++|++.+++.+ .++++||||+
T Consensus 255 ~~g~~iKtiGDa~mavfg~p~-------~a~~~Al~m~~~l~~~~----~~l~iRIGIh 302 (407)
T 1y10_A 255 PPVWFIKTIGDAVMLVCPDPA-------PLLDTVLKLVEVVDTDN----NFPRLRAGVA 302 (407)
T ss_dssp TTCEEEEEETTEEEEEESSHH-------HHHHHHHHHHHHHHTCT----TSCCEEEEEE
T ss_pred cCcEEEEEecceEEEEECCHH-------HHHHHHHHHHHHHHHhC----CCceEEEEEE
Confidence 478999999999999999883 68999999999998743 5689999985
No 11
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.60A {Ruegeria pomeroyi}
Probab=99.29 E-value=6.9e-12 Score=72.86 Aligned_cols=52 Identities=19% Similarity=0.160 Sum_probs=45.5
Q ss_pred CCceEEeeeCcEEEEEeCCCCCCchhHHHHHHHHHHHHHHHHHhhcCCC--CceEEEEecC
Q psy2440 2 KIMRQVETVGQVYMAVSGAPEETPHHACNISDLSLSFIETVENMKEGSD--NNIQIRIDEG 60 (60)
Q Consensus 2 ~~v~KvktiGD~ym~~~Glp~~~~~ha~~~~~~al~m~~~~~~~~~~~~--~~~~iRIGi~ 60 (60)
++.+++|++||+||++||.| .+++++|++|++.+.+++.... .++++||||+
T Consensus 48 ~~G~v~k~~GD~~~a~f~~~-------~~A~~~Al~i~~~l~~~~~~~~~~~~l~~riGi~ 101 (189)
T 3mr7_A 48 AGGQIVKTTGDGMLARFDTA-------QAALRCALEIQQAMQQREEDTPRKERIQYRIGIN 101 (189)
T ss_dssp TTCEEEEEETTEEEEEESSH-------HHHHHHHHHHHHHHHHHTTTSCGGGCCCEEEEEE
T ss_pred cCCEEEEEeCCEEEEEeCCH-------HHHHHHHHHHHHHHHHHhhhcccCCceeEEEEEE
Confidence 46689999999999999964 7899999999999999987643 6899999985
No 12
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes, adenylyl cyclases, monomer-dimer, catalysis, lyase; 1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Probab=99.18 E-value=5.1e-11 Score=71.01 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=31.2
Q ss_pred CCceEEeeeCcEEEEEeCCCCCCchhHHHHHHHHHHHHHHHHH
Q psy2440 2 KIMRQVETVGQVYMAVSGAPEETPHHACNISDLSLSFIETVEN 44 (60)
Q Consensus 2 ~~v~KvktiGD~ym~~~Glp~~~~~ha~~~~~~al~m~~~~~~ 44 (60)
++.+++||+||+||++||.| .+++++|++|++.+.+
T Consensus 52 ~~G~v~k~~GD~~ma~fg~p-------~~A~~~Al~i~~~l~~ 87 (235)
T 1fx2_A 52 YKCYEVKTVGDSFMIASKSP-------FAAVQLAQELQLCFLH 87 (235)
T ss_dssp TTCEEEEEETTEEEEEESCH-------HHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCeEEEEeCCH-------HHHHHHHHHHHHHHHh
Confidence 46799999999999999997 4688999999988754
No 13
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis} PDB: 1ybu_A*
Probab=99.13 E-value=3.9e-11 Score=69.83 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=40.6
Q ss_pred CCceEEeeeCcEEEEEeCCCCCCchhHHHHHHHHHHHHHHHHHhhcCCCCceEEEEecC
Q psy2440 2 KIMRQVETVGQVYMAVSGAPEETPHHACNISDLSLSFIETVENMKEGSDNNIQIRIDEG 60 (60)
Q Consensus 2 ~~v~KvktiGD~ym~~~Glp~~~~~ha~~~~~~al~m~~~~~~~~~~~~~~~~iRIGi~ 60 (60)
++.+++|++||+||++||.| .+++++|++|++.+++++ +++||||+
T Consensus 58 ~gG~v~k~~GD~~ma~f~~p-------~~A~~~Al~~~~~l~~~~------l~~riGi~ 103 (184)
T 1ybt_A 58 FGGREVNTAGDGFVATFTSP-------SAAIACADDIVDAVAALG------IEVRIGIH 103 (184)
T ss_dssp TTCEECCCSSSSEEEEESCH-------HHHHHHHHHHHHHHHTTT------CCEEEEEE
T ss_pred cCCEEEeEeCCEEEEEeCCH-------HHHHHHHHHHHHHHHhcC------CcEEEEEE
Confidence 46789999999999999987 578999999999998764 89999985
No 14
>2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding protein, cytoskeletal protein; NMR {Gallus gallus} SCOP: d.109.1.1 PDB: 2vil_A
Probab=61.27 E-value=16 Score=19.70 Aligned_cols=43 Identities=14% Similarity=0.115 Sum_probs=23.0
Q ss_pred eeCcEEEEEeCCCCC---------------CchhHHHHHHHHHHHHHHHHHhhcCCCCceEEEE
Q psy2440 9 TVGQVYMAVSGAPEE---------------TPHHACNISDLSLSFIETVENMKEGSDNNIQIRI 57 (60)
Q Consensus 9 tiGD~ym~~~Glp~~---------------~~~ha~~~~~~al~m~~~~~~~~~~~~~~~~iRI 57 (60)
+-||||++..--... +.+....++.++.++.+.+ .+.+++.|+
T Consensus 40 y~gd~YIvl~t~~~~g~~~~~i~~W~G~~ss~de~g~Aa~~aveLd~~l------gg~~vq~R~ 97 (126)
T 2vik_A 40 YEGDCYVLLSTRKTGSGFSYNIHYWLGKNSSQDEQGAAAIYTTQMDEYL------GSVAVQHRE 97 (126)
T ss_dssp CSSSCEEEEEEEECSSSEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHT------TSCSCEEEE
T ss_pred CCCCeEEEEEeccCCCceeEEEEEEeCCCCCchhHHHHHHHHHHHHHHc------CCCccEEEE
Confidence 348899887732211 1234455566666665543 234555554
No 15
>3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl histidine, ATP-binding, cytoskeleton, nucleotide-BIN phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP: d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A* 1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S* 1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S* 3a5o_S*
Probab=56.19 E-value=22 Score=19.22 Aligned_cols=43 Identities=9% Similarity=0.177 Sum_probs=23.6
Q ss_pred eeCcEEEEEeCCCCC----------------CchhHHHHHHHHHHHHHHHHHhhcCCCCceEEEE
Q psy2440 9 TVGQVYMAVSGAPEE----------------TPHHACNISDLSLSFIETVENMKEGSDNNIQIRI 57 (60)
Q Consensus 9 tiGD~ym~~~Glp~~----------------~~~ha~~~~~~al~m~~~~~~~~~~~~~~~~iRI 57 (60)
+-||||++..--... +.+....++.++.++.+.+ .+.+++.|+
T Consensus 42 y~gd~YIvl~ty~~~~g~~~~~i~~W~G~~ss~de~g~Aa~~aveLd~~l------gg~~vq~R~ 100 (128)
T 3cip_G 42 FTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYL------NGRAVQHRE 100 (128)
T ss_dssp ETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHT------TTCEEEEEE
T ss_pred cCCCeEEEEEEEecCCCceEEEEEEEcCCCCCcchHHHHHHHHHHHHHHc------CCCceEEEe
Confidence 458999987744211 1234455566666666544 234555554
No 16
>2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 PDB: 2ff6_G*
Probab=55.26 E-value=26 Score=19.63 Aligned_cols=43 Identities=9% Similarity=0.177 Sum_probs=23.6
Q ss_pred eeCcEEEEEeCCCCC----------------CchhHHHHHHHHHHHHHHHHHhhcCCCCceEEEE
Q psy2440 9 TVGQVYMAVSGAPEE----------------TPHHACNISDLSLSFIETVENMKEGSDNNIQIRI 57 (60)
Q Consensus 9 tiGD~ym~~~Glp~~----------------~~~ha~~~~~~al~m~~~~~~~~~~~~~~~~iRI 57 (60)
+-||||++..--... +.+....++.+|.++.+.+. +.+++.|+
T Consensus 61 ysgD~YIVl~ty~~~~g~~~~~IyfW~G~~ss~de~gaAA~~aveLd~~lg------g~~vQ~Re 119 (150)
T 2ff3_A 61 FTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLN------GRAVQHRE 119 (150)
T ss_dssp ETTSEEEEEEEEECTTSSEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTT------TCCEEEEE
T ss_pred cCCCeEEEEEEEecCCCceEEEEEEEeCCCCCchhHHHHHHHHHHHHHHcC------CCceEEEe
Confidence 458999887743111 12345556666666665442 34555554
No 17
>1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1
Probab=54.12 E-value=26 Score=19.41 Aligned_cols=34 Identities=6% Similarity=0.159 Sum_probs=19.6
Q ss_pred eeCcEEEEEeCCCCC----------------CchhHHHHHHHHHHHHHHH
Q psy2440 9 TVGQVYMAVSGAPEE----------------TPHHACNISDLSLSFIETV 42 (60)
Q Consensus 9 tiGD~ym~~~Glp~~----------------~~~ha~~~~~~al~m~~~~ 42 (60)
+-||||++..--... +.+....++.++.++.+.+
T Consensus 39 y~gd~YIvl~ty~~~~g~~~~~i~~W~G~~ss~de~g~Aa~~aveLd~~l 88 (147)
T 1t44_G 39 FTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYL 88 (147)
T ss_dssp ETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cCCCeEEEEEEEecCCCceEEEEEEEeCCCCChhHHHHHHHHHHHHHHHc
Confidence 458999987743111 1234555666666666544
No 18
>3tu5_B Gelsolin, protein cordon-BLeu, thymosin beta-4; unusual hairpin conformation in the D-loop, structural prote binding protein complex; HET: ATP; 3.00A {Homo sapiens}
Probab=43.84 E-value=50 Score=20.42 Aligned_cols=34 Identities=6% Similarity=0.159 Sum_probs=20.3
Q ss_pred eeCcEEEEEeCCCCC----------------CchhHHHHHHHHHHHHHHH
Q psy2440 9 TVGQVYMAVSGAPEE----------------TPHHACNISDLSLSFIETV 42 (60)
Q Consensus 9 tiGD~ym~~~Glp~~----------------~~~ha~~~~~~al~m~~~~ 42 (60)
+-||||++..--... +.|....++.++.++.+.+
T Consensus 57 y~gd~Yivl~t~~~~~g~~~~~i~~W~G~~ss~de~g~aa~~av~Ld~~l 106 (297)
T 3tu5_B 57 FTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYL 106 (297)
T ss_dssp ETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cCCCeEEEeEeEECCCCceeEEEEEEeCCCCChhHHHHHHHHHHHHHHHc
Confidence 568999997432111 2245566667777766654
No 19
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=40.54 E-value=50 Score=18.69 Aligned_cols=23 Identities=9% Similarity=0.151 Sum_probs=19.4
Q ss_pred chhHHHHHHHHHHHHHHHHHhhc
Q psy2440 25 PHHACNISDLSLSFIETVENMKE 47 (60)
Q Consensus 25 ~~ha~~~~~~al~m~~~~~~~~~ 47 (60)
.+....++..|++|...+++++.
T Consensus 136 ~nKG~eaA~aalem~~l~~~l~~ 158 (160)
T 2c92_A 136 EDKGAQATVAALATALTLRELRA 158 (160)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHSC
T ss_pred chhHHHHHHHHHHHHHHHHHhhc
Confidence 46788999999999999988763
No 20
>4hoy_A PTH, peptidyl-tRNA hydrolase; enzyme, molecular conformation, INH hydrolase; 1.78A {Acinetobacter baumannii} PDB: 4fot_A 4fop_A
Probab=38.68 E-value=14 Score=21.59 Aligned_cols=10 Identities=40% Similarity=0.518 Sum_probs=6.2
Q ss_pred CceEEEEecC
Q psy2440 51 NNIQIRIDEG 60 (60)
Q Consensus 51 ~~~~iRIGi~ 60 (60)
.-.++|||||
T Consensus 128 df~RlRiGIG 137 (193)
T 4hoy_A 128 NFHRLRIGIG 137 (193)
T ss_dssp CSEEEEEECC
T ss_pred ccceEEEeeC
Confidence 3566677765
No 21
>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A
Probab=37.01 E-value=15 Score=21.40 Aligned_cols=10 Identities=40% Similarity=0.518 Sum_probs=6.8
Q ss_pred CceEEEEecC
Q psy2440 51 NNIQIRIDEG 60 (60)
Q Consensus 51 ~~~~iRIGi~ 60 (60)
.-.++|||||
T Consensus 128 ~f~RlRiGIG 137 (193)
T 2pth_A 128 NFHRLRIGIG 137 (193)
T ss_dssp CSEEEEEECC
T ss_pred CeEEEEEEeC
Confidence 4567777775
No 22
>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii}
Probab=36.90 E-value=47 Score=20.33 Aligned_cols=9 Identities=44% Similarity=0.663 Sum_probs=7.0
Q ss_pred CcEEEEEeC
Q psy2440 11 GQVYMAVSG 19 (60)
Q Consensus 11 GD~ym~~~G 19 (60)
||-||+++.
T Consensus 182 gdny~iftt 190 (268)
T 2qv6_A 182 GDNFMAPSN 190 (268)
T ss_dssp TTEEEEECT
T ss_pred CCEEEEEeC
Confidence 588888875
No 23
>4fyj_A PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas aeruginosa} PDB: 4fno_A 4djj_A* 4erx_A 4dhw_A
Probab=36.50 E-value=16 Score=21.51 Aligned_cols=10 Identities=20% Similarity=0.381 Sum_probs=6.5
Q ss_pred CceEEEEecC
Q psy2440 51 NNIQIRIDEG 60 (60)
Q Consensus 51 ~~~~iRIGi~ 60 (60)
.-.++|||||
T Consensus 136 ~f~RlRiGIG 145 (199)
T 4fyj_A 136 SFHRLRLGIG 145 (199)
T ss_dssp CCEEEEEECC
T ss_pred ceEEEEEEeC
Confidence 3566777775
No 24
>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A
Probab=36.04 E-value=16 Score=21.28 Aligned_cols=10 Identities=30% Similarity=0.484 Sum_probs=7.1
Q ss_pred CceEEEEecC
Q psy2440 51 NNIQIRIDEG 60 (60)
Q Consensus 51 ~~~~iRIGi~ 60 (60)
.-.++|||||
T Consensus 129 ~f~RlRiGIG 138 (191)
T 2z2i_A 129 DFQRVRIGIG 138 (191)
T ss_dssp CSEEEEEECC
T ss_pred CeEEEEEeeC
Confidence 5677777775
No 25
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=34.93 E-value=40 Score=18.80 Aligned_cols=19 Identities=21% Similarity=0.576 Sum_probs=14.0
Q ss_pred CceEEeeeCc-EEEEEeCCC
Q psy2440 3 IMRQVETVGQ-VYMAVSGAP 21 (60)
Q Consensus 3 ~v~KvktiGD-~ym~~~Glp 21 (60)
.+.||-.|.| .+++.+|+.
T Consensus 30 ~~~Ki~~i~~~i~~~~aG~~ 49 (199)
T 3unf_N 30 VFDKLSPLHQRIFCALSGSA 49 (199)
T ss_dssp SCCCEEEEETTEEEEECSCH
T ss_pred ccCceEEcCCCEEEEecccH
Confidence 4567777776 778888985
No 26
>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp}
Probab=33.79 E-value=18 Score=21.38 Aligned_cols=10 Identities=30% Similarity=0.687 Sum_probs=5.3
Q ss_pred CceEEEEecC
Q psy2440 51 NNIQIRIDEG 60 (60)
Q Consensus 51 ~~~~iRIGi~ 60 (60)
.-.++|||||
T Consensus 148 ~f~RlRiGIG 157 (207)
T 3nea_A 148 DYLRLRIGIG 157 (207)
T ss_dssp CSEEEEEECC
T ss_pred CeeEEEEEeC
Confidence 3455555554
No 27
>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264}
Probab=32.92 E-value=52 Score=19.64 Aligned_cols=10 Identities=30% Similarity=0.484 Sum_probs=7.6
Q ss_pred CceEEEEecC
Q psy2440 51 NNIQIRIDEG 60 (60)
Q Consensus 51 ~~~~iRIGi~ 60 (60)
.-.++|||||
T Consensus 148 ~f~RlRIGIG 157 (222)
T 3v2i_A 148 QYWRLRIGIG 157 (222)
T ss_dssp CSEEEEEECC
T ss_pred CeEEEEEEcC
Confidence 5677888886
No 28
>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A
Probab=32.57 E-value=18 Score=21.37 Aligned_cols=10 Identities=20% Similarity=0.245 Sum_probs=6.5
Q ss_pred CceEEEEecC
Q psy2440 51 NNIQIRIDEG 60 (60)
Q Consensus 51 ~~~~iRIGi~ 60 (60)
.-.++|||||
T Consensus 142 ~f~RlRiGIG 151 (205)
T 1ryb_A 142 EFPRLSIGIG 151 (205)
T ss_dssp CSCEEEEECC
T ss_pred CeEEEEEecC
Confidence 4566777775
No 29
>3o10_A Sacsin; all-helical domain, homodimerization, chaperone; 1.90A {Homo sapiens}
Probab=30.93 E-value=26 Score=19.02 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=19.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHhh
Q psy2440 24 TPHHACNISDLSLSFIETVENMK 46 (60)
Q Consensus 24 ~~~ha~~~~~~al~m~~~~~~~~ 46 (60)
+.+.|++++++|-++++.++++-
T Consensus 115 t~~~Ae~al~~A~~v~~~v~~~l 137 (141)
T 3o10_A 115 TSEVAMRVMECTACIIIKLENFM 137 (141)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhhhhhHHhHH
Confidence 55789999999999999887653
No 30
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=27.79 E-value=52 Score=18.45 Aligned_cols=19 Identities=16% Similarity=0.534 Sum_probs=14.9
Q ss_pred CceEEeeeCc-EEEEEeCCC
Q psy2440 3 IMRQVETVGQ-VYMAVSGAP 21 (60)
Q Consensus 3 ~v~KvktiGD-~ym~~~Glp 21 (60)
.+.||-.|+| .+++.+|+.
T Consensus 38 ~~~Ki~~i~~~i~~~~aG~~ 57 (205)
T 1iru_J 38 DFQKIFPMGDRLYIGLAGLA 57 (205)
T ss_dssp CCCCEEECSTTEEEECCSCH
T ss_pred CCccEEEeCCCEEEEccccH
Confidence 5678888886 778888885
No 31
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=27.71 E-value=73 Score=18.05 Aligned_cols=20 Identities=15% Similarity=0.297 Sum_probs=15.4
Q ss_pred CCceEEeeeCc-EEEEEeCCC
Q psy2440 2 KIMRQVETVGQ-VYMAVSGAP 21 (60)
Q Consensus 2 ~~v~KvktiGD-~ym~~~Glp 21 (60)
+++.||-.|+| .+++.+|+.
T Consensus 37 ~~~~Ki~~i~~~i~~~~aG~~ 57 (219)
T 1iru_N 37 RNISRIMRVNNSTMLGASGDY 57 (219)
T ss_dssp CSCCCEEEETTTEEEEEEEEH
T ss_pred CCCCceEEeCCCEEEEeccCH
Confidence 35678888886 778888985
No 32
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=26.06 E-value=1.2e+02 Score=18.62 Aligned_cols=13 Identities=23% Similarity=0.618 Sum_probs=9.5
Q ss_pred eeCcEEEEEeCCC
Q psy2440 9 TVGQVYMAVSGAP 21 (60)
Q Consensus 9 tiGD~ym~~~Glp 21 (60)
+-||||++..--.
T Consensus 43 y~gd~Yivl~t~~ 55 (347)
T 1j72_A 43 FSGDSYLVLHNGP 55 (347)
T ss_dssp ETTSEEEEEEECS
T ss_pred cCCCEEEEEEeec
Confidence 4599999977443
No 33
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=25.52 E-value=72 Score=17.86 Aligned_cols=20 Identities=0% Similarity=0.101 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHHHh
Q psy2440 26 HHACNISDLSLSFIETVENM 45 (60)
Q Consensus 26 ~ha~~~~~~al~m~~~~~~~ 45 (60)
++...++..|++|.+.++++
T Consensus 134 nkG~eaA~aalem~~l~~~l 153 (154)
T 1hqk_A 134 NKGWEAALSAIEMANLFKSL 153 (154)
T ss_dssp EHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhc
Confidence 46788899999999988765
No 34
>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB: 4djj_A* 4erx_A 4dhw_A
Probab=30.40 E-value=16 Score=21.40 Aligned_cols=9 Identities=22% Similarity=0.390 Sum_probs=6.0
Q ss_pred ceEEEEecC
Q psy2440 52 NIQIRIDEG 60 (60)
Q Consensus 52 ~~~iRIGi~ 60 (60)
-.++|||||
T Consensus 131 f~RlRiGIG 139 (194)
T 4fno_A 131 FHRLRLGIG 139 (194)
Confidence 456677775
No 35
>1ufb_A TT1696 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.90A {Thermus thermophilus} SCOP: a.24.16.3
Probab=23.36 E-value=86 Score=16.07 Aligned_cols=22 Identities=27% Similarity=0.193 Sum_probs=17.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHH
Q psy2440 23 ETPHHACNISDLSLSFIETVEN 44 (60)
Q Consensus 23 ~~~~ha~~~~~~al~m~~~~~~ 44 (60)
.+.+.++.+++.|-.+++.+++
T Consensus 104 ~t~e~a~~~l~~a~~v~~~v~~ 125 (127)
T 1ufb_A 104 YTRLEAEEALDLAQKILAFVEE 125 (127)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHh
Confidence 3557888999999888887765
No 36
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=22.25 E-value=87 Score=17.53 Aligned_cols=20 Identities=0% Similarity=0.081 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHHHh
Q psy2440 26 HHACNISDLSLSFIETVENM 45 (60)
Q Consensus 26 ~ha~~~~~~al~m~~~~~~~ 45 (60)
++...++..|++|.+.++++
T Consensus 134 nkG~eaA~aalem~~l~~~l 153 (154)
T 1rvv_A 134 NKGVDCAVSAIEMANLNRSF 153 (154)
T ss_dssp EHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHhc
Confidence 56788899999999988765
No 37
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=22.14 E-value=92 Score=17.46 Aligned_cols=20 Identities=5% Similarity=0.152 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHhh
Q psy2440 27 HACNISDLSLSFIETVENMK 46 (60)
Q Consensus 27 ha~~~~~~al~m~~~~~~~~ 46 (60)
....++..|++|...+++++
T Consensus 137 KG~eaA~aalem~~l~~~l~ 156 (157)
T 2obx_A 137 KGKEAARACVEILAAREKIA 156 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 34667888899998887754
No 38
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=21.60 E-value=78 Score=17.80 Aligned_cols=21 Identities=14% Similarity=0.302 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhh
Q psy2440 26 HHACNISDLSLSFIETVENMK 46 (60)
Q Consensus 26 ~ha~~~~~~al~m~~~~~~~~ 46 (60)
++-..++..|++|.+.++++.
T Consensus 135 nKG~eaA~aalem~~l~~~l~ 155 (156)
T 3nq4_A 135 NKGAEAALTALEMINVLKAIK 155 (156)
T ss_dssp BHHHHHHHHHHHHHHHHHTC-
T ss_pred ccHHHHHHHHHHHHHHHHHhc
Confidence 466788999999999887653
No 39
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=21.49 E-value=96 Score=17.41 Aligned_cols=21 Identities=5% Similarity=0.050 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhh
Q psy2440 26 HHACNISDLSLSFIETVENMK 46 (60)
Q Consensus 26 ~ha~~~~~~al~m~~~~~~~~ 46 (60)
++-..++..|++|.+.++++.
T Consensus 134 nKG~eaA~aAlem~~l~~~l~ 154 (156)
T 1c2y_A 134 NKGAESALTAIEMASLFEHHL 154 (156)
T ss_dssp EHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHh
Confidence 356788999999999988765
No 40
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}
Probab=20.60 E-value=1.7e+02 Score=18.38 Aligned_cols=10 Identities=20% Similarity=0.391 Sum_probs=7.7
Q ss_pred eeCcEEEEEe
Q psy2440 9 TVGQVYMAVS 18 (60)
Q Consensus 9 tiGD~ym~~~ 18 (60)
+-||||++..
T Consensus 76 y~gD~YIvl~ 85 (371)
T 3fg6_A 76 YGGDCYIILY 85 (371)
T ss_dssp CTTCEEEEEE
T ss_pred ecCceEEEEE
Confidence 4589999964
No 41
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=20.22 E-value=89 Score=17.06 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=15.4
Q ss_pred CCceEEeee--CcEEEEEeCCC
Q psy2440 2 KIMRQVETV--GQVYMAVSGAP 21 (60)
Q Consensus 2 ~~v~Kvkti--GD~ym~~~Glp 21 (60)
+++.||-.| ...+++.+|+.
T Consensus 29 ~~~~Ki~~i~~~~i~~~~aG~~ 50 (174)
T 1g3k_A 29 GNARKVRRLYNGKVLAGFAGGT 50 (174)
T ss_dssp SCCCCEEEETTTTEEEEEESCH
T ss_pred CCCCcEEEECCCCEEEEeCccH
Confidence 356788888 56788889995
No 42
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=20.19 E-value=1.2e+02 Score=17.99 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=15.3
Q ss_pred CCceEEeeeCc-EEEEEeCCC
Q psy2440 2 KIMRQVETVGQ-VYMAVSGAP 21 (60)
Q Consensus 2 ~~v~KvktiGD-~ym~~~Glp 21 (60)
+.+.||-.|+| .+++.+|+.
T Consensus 70 ~~~~KI~~i~d~i~~~~aG~~ 90 (266)
T 1g0u_M 70 NGVERLIPVGDNTVVGISGDI 90 (266)
T ss_dssp CCCCCEEECTTSEEEEEEEEH
T ss_pred CCcCcEEEcCCCEEEEeccCH
Confidence 35678888886 778888885
No 43
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=20.02 E-value=1.1e+02 Score=17.25 Aligned_cols=20 Identities=5% Similarity=0.195 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHhh
Q psy2440 27 HACNISDLSLSFIETVENMK 46 (60)
Q Consensus 27 ha~~~~~~al~m~~~~~~~~ 46 (60)
....++..|++|...++++.
T Consensus 136 KG~eaA~aal~m~~l~~~l~ 155 (158)
T 1di0_A 136 KGVEAAHAALQIVSERSRIA 155 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHHHHhh
Confidence 34667888999999888764
Done!