RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2440
(60 letters)
>gnl|CDD|201086 pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic
domain.
Length = 184
Score = 56.9 bits (138), Expect = 4e-12
Identities = 17/53 (32%), Positives = 35/53 (66%)
Query: 5 RQVETVGQVYMAVSGAPEETPHHACNISDLSLSFIETVENMKEGSDNNIQIRI 57
+V+T+G YMA SG PE +P HA +++++L +E ++++ S +++R+
Sbjct: 52 YKVKTIGDAYMAASGLPEPSPAHAQTLAEMALDMLEAIKSVNIHSFEGLRVRV 104
>gnl|CDD|214485 smart00044, CYCc, Adenylyl- / guanylyl cyclase, catalytic domain.
Present in two copies in mammalian adenylyl cyclases.
Eubacterial homologues are known. Two residues (Asn,
Arg) are thought to be involved in catalysis. These
cyclases have important roles in a diverse range of
cellular processes.
Length = 194
Score = 43.8 bits (104), Expect = 3e-07
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 7 VETVGQVYMAVSGAPEETPH-HACNISDLSLSFIETVEN-MKEGSDNNIQIRI 57
V+T+G YM SG PEE HA I+D +L +E ++ + + + +++RI
Sbjct: 82 VKTIGDAYMVASGLPEEALVDHAELIADEALDMVEELKTVLVQHREEGLRVRI 134
>gnl|CDD|143636 cd07302, CHD, cyclase homology domain. Catalytic domains of the
mononucleotidyl cyclases (MNC's), also called cyclase
homology domains (CHDs), are part of the class III
nucleotidyl cyclases. This class includes eukaryotic
and prokaryotic adenylate cyclases (AC's) and guanylate
cyclases (GC's). They seem to share a common catalytic
mechanism in their requirement for two magnesium ions
to bind the polyphosphate moiety of the nucleotide.
Length = 177
Score = 39.1 bits (92), Expect = 2e-05
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 7 VETVGQVYMAVSGAPEETPHHACNISDLSLSFIETVE--NMKEGSDNNIQIRI 57
+T+G MAV G P HA +L E + N + +++RI
Sbjct: 47 DKTIGDAVMAVFGLPGAHEDHAERAVRAALEMQEALAELNAEREGGPPLRLRI 99
>gnl|CDD|143637 cd07556, Nucleotidyl_cyc_III, Class III nucleotidyl cyclases.
Class III nucleotidyl cyclases are the largest, most
diverse group of nucleotidyl cyclases (NC's) containing
prokaryotic and eukaryotic proteins. They can be
divided into two major groups; the mononucleotidyl
cyclases (MNC's) and the diguanylate cyclases (DGC's).
The MNC's, which include the adenylate cyclases (AC's)
and the guanylate cyclases (GC's), have a conserved
cyclase homology domain (CHD), while the DGC's have a
conserved GGDEF domain, named after a conserved motif
within this subgroup. Their products, cyclic guanylyl
and adenylyl nucleotides, are second messengers that
play important roles in eukaryotic signal transduction
and prokaryotic sensory pathways.
Length = 133
Score = 26.2 bits (58), Expect = 0.91
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 7 VETVGQVYMAVSGAPEETPHHACNISDLSLSFIETVENMKEGSDNNIQIRI 57
++T+G +M VSG H + E V + + N +++RI
Sbjct: 47 IKTIGDEFMVVSG-----LDHPAAAVAFAEDMREAVSALNQSEGNPVRVRI 92
>gnl|CDD|235448 PRK05414, PRK05414, urocanate hydratase; Provisional.
Length = 556
Score = 24.7 bits (55), Expect = 2.8
Identities = 8/13 (61%), Positives = 9/13 (69%), Gaps = 1/13 (7%)
Query: 38 FIETVENMKEGSD 50
ET E MK+GSD
Sbjct: 454 NRET-EAMKDGSD 465
>gnl|CDD|165213 PHA02885, PHA02885, putative interleukin binding protein;
Provisional.
Length = 135
Score = 24.6 bits (53), Expect = 3.1
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 30 NISDLSLSFIETVENMKEGSDNNIQI 55
N S FIE +E EG DN +
Sbjct: 70 NTSPGEYIFIENLEGANEGQDNTFAL 95
>gnl|CDD|240393 PTZ00383, PTZ00383, malate:quinone oxidoreductase; Provisional.
Length = 497
Score = 24.7 bits (54), Expect = 3.7
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 7/48 (14%)
Query: 8 ETVGQVYMAVSGAPEETPHHACNISDLSLSFIETVENMKEGSDNNIQI 55
E + +Y+ P E + LS SF++ I I
Sbjct: 194 EPLAALYV-----PNE--LTTVDYQKLSESFVKHARRDALVPGKKISI 234
>gnl|CDD|216344 pfam01175, Urocanase, Urocanase.
Length = 545
Score = 24.0 bits (53), Expect = 4.9
Identities = 9/13 (69%), Positives = 10/13 (76%), Gaps = 1/13 (7%)
Query: 38 FIETVENMKEGSD 50
ET ENMK+GSD
Sbjct: 443 NRET-ENMKDGSD 454
>gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme
metabolism].
Length = 432
Score = 24.1 bits (53), Expect = 5.4
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Query: 3 IMRQVETVGQVYMA--VSGAP 21
IM Q+ +G VY A +SG P
Sbjct: 285 IMEQLAPLGPVYQAGTLSGNP 305
>gnl|CDD|221279 pfam11867, DUF3387, Domain of unknown function (DUF3387). This
domain is functionally uncharacterized. This domain is
found in bacteria and archaea. This presumed domain is
typically between 255 to 340 amino acids in length. This
domain is found associated with pfam04851, pfam04313.
Length = 333
Score = 23.7 bits (52), Expect = 7.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 30 NISDLSLSFIETVENMKE 47
+IS LS F+ V+NMK
Sbjct: 150 DISILSDEFLAEVKNMKH 167
>gnl|CDD|185008 PRK15048, PRK15048, methyl-accepting chemotaxis protein II;
Provisional.
Length = 553
Score = 23.8 bits (51), Expect = 8.0
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 28 ACNISDLSLSFIETVENMKEGSD 50
A ++S + S +TV +++EGSD
Sbjct: 251 AQSVSHMQRSLTDTVTHVREGSD 273
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.129 0.356
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 2,862,745
Number of extensions: 189183
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 11
Length of query: 60
Length of database: 10,937,602
Length adjustment: 31
Effective length of query: 29
Effective length of database: 9,562,628
Effective search space: 277316212
Effective search space used: 277316212
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.1 bits)