RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2440
(60 letters)
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics,
PSI, protein structure initiative; 2.70A {Mycobacterium
tuberculosis}
Length = 204
Score = 61.9 bits (151), Expect = 4e-14
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 7 VETVGQVYMAVSGAPEETPHHACNISDLSLSFIETVENMKEGSDNNIQIRI 57
+E G YM VSG P P H ++D +L +K+ N + +R+
Sbjct: 56 IEVSGDSYMVVSGVPRPRPDHTQALADFALDMTNVAAQLKDPRGNPVPLRV 106
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic,
lyase, membrane, transmembrane; 2.55A {Chlamydomonas
reinhardtii} PDB: 3et6_B
Length = 190
Score = 61.2 bits (149), Expect = 6e-14
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 7 VETVGQVYMAVSGAPEETPHHACNISDLSLSFIETVENMKEGSDNNIQIRI 57
VET+G YM V HA + + +L E + ++IR+
Sbjct: 56 VETIGDAYMVVCNVTVPCDDHADVLLEFALRMHEEASRVASSLGEPVRIRV 106
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural
genomics, structural genomics conso SGC, CGMP
biosynthesis; 2.08A {Homo sapiens}
Length = 225
Score = 60.8 bits (148), Expect = 1e-13
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 7 VETVGQVYMAVSGAPEETPHHACNISDLSLSFIETVENMKEGSDNNIQIRI 57
VET+G Y G +E+ HA I+ ++L +E + + I++RI
Sbjct: 60 VETIGDAYCVAGGLHKESDTHAVQIALMALKMMELSDEVMSPHGEPIKMRI 110
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1,
metal-binding, CGMP biosynthesis, nucleotide-B cyclase,
GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Length = 219
Score = 57.7 bits (140), Expect = 2e-12
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 7 VETVGQVYMAVSGAPEETPHHACNISDLSLSFIETVENMKEGSDNNIQIRI 57
VETVG YM VSG PE HHA +I L+L +E ++ ++QI I
Sbjct: 65 VETVGDKYMTVSGLPEPCIHHARSICHLALDMMEIAGQVQVDG-ESVQITI 114
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A*
1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A*
3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A*
1tl7_A*
Length = 220
Score = 55.7 bits (135), Expect = 9e-12
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 7 VETVGQVYMAVSGAPEETPHHACNISDLSLSFIETVENMKEGSDNNIQIRI 57
++ +G Y VSG PE HA ++ + IE + ++E + N+ +R+
Sbjct: 80 IKILGDCYYCVSGLPEARADHAHCCVEMGMDMIEAISLVREMTGVNVNMRV 130
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK;
2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B*
1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B*
2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B*
3maa_B* 1cul_B*
Length = 220
Score = 49.2 bits (118), Expect = 3e-09
Identities = 12/62 (19%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 7 VETVGQVYMAVSG-----------APEETPHHACNISDLSLSFIETVENMKEGSDNNIQI 55
++T+G YMA +G PE H + + + + + ++ + + S N+ ++
Sbjct: 67 IKTIGSTYMAATGLSAIPSQEHAQEPERQYMHIGTMVEFAYALVGKLDAINKHSFNDFKL 126
Query: 56 RI 57
R+
Sbjct: 127 RV 128
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 3e-04
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 8 ETVGQVYMAVSGAPEETPHHACNISDLSLSFI-ETVENMKEGSDNNIQIRIDE 59
E + + P++ P + LS I E++ + DN + D+
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.002
Identities = 6/40 (15%), Positives = 17/40 (42%), Gaps = 14/40 (35%)
Query: 4 MRQVETVGQVYMAVSGAPEETPHHACNISDLSLSFIETVE 43
+++++ ++Y A + P +L+ T+E
Sbjct: 22 LKKLQASLKLY-----ADDSAP---------ALAIKATME 47
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase;
HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB:
1y11_A*
Length = 407
Score = 32.3 bits (73), Expect = 0.005
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 11/53 (20%)
Query: 5 RQVETVGQVYMAVSGAPEETPHHACNISDLSLSFIETVENMKEGSDNNIQIRI 57
++T+G M V P ++ VE + +N ++R
Sbjct: 258 WFIKTIGDAVMLVCPDPAPLLDTV----------LKLVEVVDTD-NNFPRLRA 299
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes,
adenylyl cyclases, monomer-dimer, catalysis, lyase;
1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Length = 235
Score = 27.9 bits (62), Expect = 0.13
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 7 VETVGQVYMAVSGAPEETPHHACNISDLSL 36
V+TVG +M S +P A + L
Sbjct: 57 VKTVGDSFMIASKSPFAAVQLAQELQLCFL 86
>1h16_A Formate acetyltransferase 1; lyase, glycyl radical enzyme,
acyltransferase, acetylation; HET: COA PG4; 1.53A
{Escherichia coli} SCOP: c.7.1.1 PDB: 1h17_A* 1h18_A*
1mzo_A* 2pfl_A 3pfl_A 1cm5_A 1qhm_A
Length = 759
Score = 26.9 bits (59), Expect = 0.36
Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 2/35 (5%)
Query: 26 HHACNISDLSLSFIETVENMKEGSDNNIQIRIDEG 60
S F+ T+ M + N+ I E
Sbjct: 346 RTLVT--KNSFRFLNTLYTMGPSPEPNMTILWSEK 378
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.4 bits (55), Expect = 1.4
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 22 EETPHHACNISDLSLSFIET-VE--NMKEGSDNNIQI 55
E P +IS+L+ ++ V N + ++I
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI 368
>2ozi_A Hypothetical protein RPA4178; APC6210, putative protein RPA4178,
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris
CGA009} PDB: 3lag_A*
Length = 98
Score = 24.1 bits (52), Expect = 2.4
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 9 TVGQVYMAVSGAPEETPHHACNISDLSLSFIETVENMKEGS 49
G+ Y +G H N S + F+E +E +K GS
Sbjct: 64 KTGRSYARKAG----VQHDVRNESTAEIVFLE-IE-LKAGS 98
>2q9r_A Protein of unknown function; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 1.91A {Shewanella baltica}
Length = 200
Score = 22.9 bits (49), Expect = 7.1
Identities = 7/38 (18%), Positives = 11/38 (28%)
Query: 13 VYMAVSGAPEETPHHACNISDLSLSFIETVENMKEGSD 50
+ + + NIS LS S + D
Sbjct: 102 ISTLLGAIQGKIEEDIVNISKLSSSTVANYIEAISDVD 139
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.129 0.356
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 881,258
Number of extensions: 37002
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 16
Length of query: 60
Length of database: 6,701,793
Length adjustment: 31
Effective length of query: 29
Effective length of database: 5,836,242
Effective search space: 169251018
Effective search space used: 169251018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.4 bits)