RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2440
         (60 letters)



>d1h16a_ c.7.1.1 (A:) Pyruvate formate-lyase, PFL {Escherichia coli
           [TaxId: 562]}
          Length = 759

 Score = 26.7 bits (59), Expect = 0.15
 Identities = 7/30 (23%), Positives = 13/30 (43%)

Query: 31  ISDLSLSFIETVENMKEGSDNNIQIRIDEG 60
           ++  S  F+ T+  M    + N+ I   E 
Sbjct: 349 VTKNSFRFLNTLYTMGPSPEPNMTILWSEK 378


>d1fx2a_ d.58.29.1 (A:) Receptor-type monomeric adenylyl cyclase
           {Trypanosome (Trypanosoma brucei), different isoform
           [TaxId: 5691]}
          Length = 235

 Score = 25.3 bits (54), Expect = 0.50
 Identities = 10/53 (18%), Positives = 18/53 (33%)

Query: 7   VETVGQVYMAVSGAPEETPHHACNISDLSLSFIETVENMKEGSDNNIQIRIDE 59
           V+TVG  +M  S +P      A  +    L        + +      + R + 
Sbjct: 57  VKTVGDSFMIASKSPFAAVQLAQELQLCFLHHDWGTNALDDSYREFEEQRAEG 109


>d1jv2a2 b.1.15.1 (A:599-737) Thigh, calf-1 and calf-2 domains of
          integrin alpha {Human (Homo sapiens) [TaxId: 9606]}
          Length = 139

 Score = 23.3 bits (50), Expect = 2.1
 Identities = 5/28 (17%), Positives = 11/28 (39%)

Query: 31 ISDLSLSFIETVENMKEGSDNNIQIRID 58
             L +S     + +  G DN + + + 
Sbjct: 5  KPKLEVSVDSDQKKIYIGDDNPLTLIVK 32


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.129    0.356 

Gapped
Lambda     K      H
   0.267   0.0518    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 205,599
Number of extensions: 6592
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 4
Length of query: 60
Length of database: 2,407,596
Length adjustment: 30
Effective length of query: 30
Effective length of database: 1,995,696
Effective search space: 59870880
Effective search space used: 59870880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.4 bits)