BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2441
(212 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 144 bits (363), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 111/203 (54%), Gaps = 28/203 (13%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTY 89
P+I P + V + +C+A G+PPP I W + V +++ RY +L +
Sbjct: 7 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQS-RYTVLEQPGGISI 65
Query: 90 IKIKP----------------------NLFSPLSVYSADKIPPGFPQITEAPSTKVVEIS 127
++I+P + + L++Y DK P GFP IT+ P T+V+E+
Sbjct: 66 LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVG 125
Query: 128 HTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYEC 187
HT ++ C A GNP P I WI+ VD S NPRY+L G LQI NS EEDQGKYEC
Sbjct: 126 HTVLMTCKAIGNPTPNIYWIKNQTKVDMS-NPRYSL----KDGFLQIENSREEDQGKYEC 180
Query: 188 VAENEVGTEYSPSTMLYVKGTQV 210
VAEN +GTE+S +T LYVK +V
Sbjct: 181 VAENSMGTEHSKATNLYVKVRRV 203
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 17 LSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNP 76
L++Y DK P GFP IT+ P T+V+E+ HT ++ C A GNP P I WI+ VD S NP
Sbjct: 98 LTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMS-NP 156
Query: 77 RYNL 80
RY+L
Sbjct: 157 RYSL 160
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 143 bits (361), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 111/203 (54%), Gaps = 28/203 (13%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTY 89
P+I P + V + +C+A G+PPP I W + V +++ RY +L +
Sbjct: 9 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQS-RYTVLEQPGGISI 67
Query: 90 IKIKP----------------------NLFSPLSVYSADKIPPGFPQITEAPSTKVVEIS 127
++I+P + + L++Y DK P GFP IT+ P T+V+E+
Sbjct: 68 LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVG 127
Query: 128 HTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYEC 187
HT ++ C A GNP P I WI+ VD S NPRY+L G LQI NS EEDQGKYEC
Sbjct: 128 HTVLMTCKAIGNPTPNIYWIKNQTKVDMS-NPRYSL----KDGFLQIENSREEDQGKYEC 182
Query: 188 VAENEVGTEYSPSTMLYVKGTQV 210
VAEN +GTE+S +T LYVK +V
Sbjct: 183 VAENSMGTEHSKATNLYVKVRRV 205
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 17 LSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNP 76
L++Y DK P GFP IT+ P T+V+E+ HT ++ C A GNP P I WI+ VD S NP
Sbjct: 100 LTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMS-NP 158
Query: 77 RYNL 80
RY+L
Sbjct: 159 RYSL 162
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 130 bits (328), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 105/203 (51%), Gaps = 26/203 (12%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLT-SGAPGT 88
P+ T P + C A+G+P PKI W ++ V N R+ ++ G+
Sbjct: 7 PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVS---NQRFEVIEFDDGSGS 63
Query: 89 YIKIKP---------------------NLFSPLSVYSADKIPPGFPQITEAPSTKVVEIS 127
++I+P ++ + L+V D+IP GFP I P KVVE +
Sbjct: 64 VLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERT 123
Query: 128 HTTVLHCSASGNPPPKISWIREMLPVDTS-RNPRYNLLTSGAPGALQITNSIEEDQGKYE 186
T + C+ASGNP P+I+W ++ LPVDTS N R L S + GALQI S E DQGKYE
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYE 183
Query: 187 CVAENEVGTEYSPSTMLYVKGTQ 209
CVA N GT YS LYV+GT+
Sbjct: 184 CVATNSAGTRYSAPANLYVRGTK 206
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 40/59 (67%)
Query: 17 LSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRN 75
L+V D+IP GFP I P KVVE + T + C+ASGNP P+I+W ++ LPVDTS N
Sbjct: 96 LTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNN 154
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 98/183 (53%), Gaps = 29/183 (15%)
Query: 51 CSASGNPPPKISWIREMLPVDTSRNPRYNLLT-SGAPGTYIKIKP--------------- 94
C A+G P P+I+W+++ V + R + ++ G+ ++I+P
Sbjct: 28 CQATGEPKPRITWMKKGKKVSSQR---FEVIEFDDGAGSVLRIQPLRVQRDEAIYECTAT 84
Query: 95 ------NLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR 148
N + LSV +++PPGFP I P KVVE + T + C+A GNP P+ISW +
Sbjct: 85 NSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFK 144
Query: 149 EMLPVD-TSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207
+ LPVD + N R L S GALQI +S E DQGKYECVA N GT YS LYV+
Sbjct: 145 DFLPVDPATSNGRIKQLRS---GALQIESSEESDQGKYECVATNSAGTRYSAPANLYVRV 201
Query: 208 TQV 210
+V
Sbjct: 202 RRV 204
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 2 CIGTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKI 61
C T + N + LSV +++PPGFP I P KVVE + T + C+A GNP P+I
Sbjct: 81 CTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEI 140
Query: 62 SWIREMLPVD-TSRNPRYNLLTSGA 85
SW ++ LPVD + N R L SGA
Sbjct: 141 SWFKDFLPVDPATSNGRIKQLRSGA 165
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 93/178 (52%), Gaps = 27/178 (15%)
Query: 51 CSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTYIKIKP---------------- 94
C A+G P P+I+W+++ V + R GA G+ ++I+P
Sbjct: 29 CQATGEPKPRITWMKKGKKVSSQRFEVIEF-DDGA-GSVLRIQPLRVQRDEAIYECTATN 86
Query: 95 -----NLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE 149
N + LSV D++P GFP I P KVVE T + C+A GNP P+ISW ++
Sbjct: 87 SLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRTATMLCAAGGNPDPEISWFKD 146
Query: 150 MLPVD-TSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
LPVD + N R L S GALQI +S E DQGKYECVA N GT YS LYV+
Sbjct: 147 FLPVDPAASNGRIKQLRS---GALQIESSEESDQGKYECVATNSAGTRYSAPANLYVR 201
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 2 CIGTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKI 61
C T + N + LSV D++P GFP I P KVVE T + C+A GNP P+I
Sbjct: 82 CTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRTATMLCAAGGNPDPEI 141
Query: 62 SWIREMLPVD-TSRNPRYNLLTSGA 85
SW ++ LPVD + N R L SGA
Sbjct: 142 SWFKDFLPVDPAASNGRIKQLRSGA 166
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 102/203 (50%), Gaps = 27/203 (13%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTY 89
P+ + P ++ C A+G+P P+++W ++ V++ R S G
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA--GAV 64
Query: 90 IKIKP---------------------NLFSPLSVYSADKIPPGFPQITEAPSTKVVEISH 128
++I+P + + L+V D++P GFP I P KVVE +
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTR 124
Query: 129 TTVLHCSASGNPPPKISWIREMLPVD-TSRNPRYNLLTSGAPGALQITNSIEEDQGKYEC 187
T + C+ASGNP P+I+W ++ LPVD ++ N R L S GALQI +S E DQGKYEC
Sbjct: 125 TATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRS---GALQIESSEETDQGKYEC 181
Query: 188 VAENEVGTEYSPSTMLYVKGTQV 210
VA N G YS LYV+ +V
Sbjct: 182 VATNSAGVRYSSPANLYVRVRRV 204
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 13 LFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVD- 71
+ + L+V D++P GFP I P KVVE + T + C+ASGNP P+I+W ++ LPVD
Sbjct: 92 VHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDP 151
Query: 72 TSRNPRYNLLTSGA 85
++ N R L SGA
Sbjct: 152 SASNGRIKQLRSGA 165
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 96/178 (53%), Gaps = 27/178 (15%)
Query: 51 CSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTYIKIKP-------NLF------ 97
C A+G+P P+++W ++ V++ R S G ++I+P N++
Sbjct: 28 CQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA--GAVLRIQPLRTPRDENIYECVAQN 85
Query: 98 --------SPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE 149
+ L+V D++PPGFP I P KVVE + T + C+ASGNP P+I+W ++
Sbjct: 86 PHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKD 145
Query: 150 MLPVD-TSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
LPVD ++ N R L S G LQI +S E DQGKYECVA N G YS LYV+
Sbjct: 146 FLPVDPSTSNGRIKQLRS---GGLQIESSEETDQGKYECVASNSAGVRYSSPANLYVR 200
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 13 LFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVD- 71
+ + L+V D++PPGFP I P KVVE + T + C+ASGNP P+I+W ++ LPVD
Sbjct: 92 VHAKLTVLREDQLPPGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDP 151
Query: 72 TSRNPRYNLLTSGA 85
++ N R L SG
Sbjct: 152 STSNGRIKQLRSGG 165
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 100/199 (50%), Gaps = 27/199 (13%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTY 89
P+ + P ++ C A+G+P P+++W ++ V++ R S G
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA--GAV 64
Query: 90 IKIKP---------------------NLFSPLSVYSADKIPPGFPQITEAPSTKVVEISH 128
++I+P + + L+V D++P GFP I P KVVE +
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTR 124
Query: 129 TTVLHCSASGNPPPKISWIREMLPVD-TSRNPRYNLLTSGAPGALQITNSIEEDQGKYEC 187
T + C+ASGNP P+I+W ++ LPVD ++ N R L S GALQI +S E DQGKYEC
Sbjct: 125 TATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRS---GALQIESSEETDQGKYEC 181
Query: 188 VAENEVGTEYSPSTMLYVK 206
VA N G YS LYV+
Sbjct: 182 VATNSAGVRYSSPANLYVR 200
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 13 LFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVD- 71
+ + L+V D++P GFP I P KVVE + T + C+ASGNP P+I+W ++ LPVD
Sbjct: 92 VHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDP 151
Query: 72 TSRNPRYNLLTSGA 85
++ N R L SGA
Sbjct: 152 SASNGRIKQLRSGA 165
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 117 bits (293), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 100/199 (50%), Gaps = 27/199 (13%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTY 89
P+ + P ++ C A+G+P P+++W ++ V++ R S G
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA--GAV 64
Query: 90 IKIKP---------------------NLFSPLSVYSADKIPPGFPQITEAPSTKVVEISH 128
++I+P + + L+V D++P GFP I P KVVE +
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTR 124
Query: 129 TTVLHCSASGNPPPKISWIREMLPVD-TSRNPRYNLLTSGAPGALQITNSIEEDQGKYEC 187
T + C+ASGNP P+I+W ++ LPVD ++ N R L SGA LQI +S E DQGKYEC
Sbjct: 125 TATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGA---LQIESSEETDQGKYEC 181
Query: 188 VAENEVGTEYSPSTMLYVK 206
VA N G YS LYV+
Sbjct: 182 VATNSAGVRYSSPANLYVR 200
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 95/204 (46%), Gaps = 38/204 (18%)
Query: 13 LFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVD- 71
+ + L+V D++P GFP I P KVVE + T + C+ASGNP P+I+W ++ LPVD
Sbjct: 92 VHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDP 151
Query: 72 TSRNPRYNLLTSGA----------PGTYIKIKPN-----LFSPLSVYSADKIPPGFPQIT 116
++ N R L SGA G Y + N SP ++Y ++ P+ +
Sbjct: 152 SASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYV--RVQNVAPRFS 209
Query: 117 EAPSTKVVEISHTTVLHCSASGNPPPKISWIR---EMLPVD---TSRNPRYNLLTSGAPG 170
P + + + C A G+P P + W++ ++ P D RN
Sbjct: 210 ILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRN------------ 257
Query: 171 ALQITNSIEEDQGKYECVAENEVG 194
L++T+ +D Y CVA + +G
Sbjct: 258 VLELTDV--KDSANYTCVAMSSLG 279
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 90/197 (45%), Gaps = 20/197 (10%)
Query: 22 ADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPV---DTSRNPRY 78
A+K+P P IT T + C+ P P+ISW R + + DT + R
Sbjct: 1 AEKLPKA-PVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRE 59
Query: 79 N--LLT-----SGAPGTYIKIKPNLFSPLSVYSADKIPPGF-PQITEAP-STKVVEISHT 129
N LLT G Y N +V S + P+IT P + K++E
Sbjct: 60 NGQLLTILSVEDSDDGIYCCTANNGVGG-AVESCGALQVKMKPKITRPPINVKIIE-GLK 117
Query: 130 TVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVA 189
VL C+ GNP P +SWI+ + N R +L SG+ L+I N +ED G+Y CVA
Sbjct: 118 AVLPCTTMGNPKPSVSWIKGDSAL--RENSRIAVLESGS---LRIHNVQKEDAGQYRCVA 172
Query: 190 ENEVGTEYSPSTMLYVK 206
+N +GT YS L V+
Sbjct: 173 KNSLGTAYSKLVKLEVE 189
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 83/196 (42%), Gaps = 25/196 (12%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSR-NPRYN--LLTSGA- 85
P+I E PS +V L+C A G P P I W + V+T + +PR + LL SG+
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 86 --------------PGTYIKIKPNLFSPLSVYSAD-KIPPGFPQITEAPSTKVVEISHTT 130
G Y+ + N + A ++ + PS +V +
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPA 129
Query: 131 VLHCS-ASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVA 189
V+ C G+P P ISW ++ P+D ++ R + G L IT + + D GKY CV
Sbjct: 130 VMECQPPRGHPEPTISWKKDGSPLD-DKDERITIRG----GKLMITYTRKSDAGKYVCVG 184
Query: 190 ENEVGTEYSPSTMLYV 205
N VG S L V
Sbjct: 185 TNMVGERESEVAELTV 200
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 89/201 (44%), Gaps = 26/201 (12%)
Query: 14 FSPLSVYSAD------KIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREM 67
FS LS+ + D I FP T A + ++V L C A GNP P+I W R++
Sbjct: 192 FSQLSLAAEDARQYAPSIKAKFPADTYALTGQMV------TLECFAFGNPVPQIKW-RKL 244
Query: 68 LPVDTSR----NPRYNL--LTSGAPGTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPST 121
TS+ P ++ + GTY N+ Y I P + +
Sbjct: 245 DGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENI-KGRDTYQGRIIIHAQPDWLDVITD 303
Query: 122 KVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEED 181
+I C ASG P P + W+R+ P+ S+N + SG G L+ + + ED
Sbjct: 304 TEADIGSDLRWSCVASGKPRPAVRWLRDGQPL-ASQN---RIEVSG--GELRFSKLVLED 357
Query: 182 QGKYECVAENEVGTEYSPSTM 202
G Y+CVAEN+ GT Y+ + +
Sbjct: 358 SGMYQCVAENKHGTVYASAEL 378
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 132 LHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIE-EDQGKYECVAE 190
L C A NPP W + + RY L+ G L I+N ++ +D G Y+CVA
Sbjct: 27 LTCRARANPPATYRWKMNGTELKMGPDSRYRLVA----GDLVISNPVKAKDAGSYQCVAT 82
Query: 191 NEVGTEYSPSTML 203
N GT S L
Sbjct: 83 NARGTVVSREASL 95
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 24/199 (12%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNL-LTSGA--- 85
P+I E P+ VV+ + L+C G P P I W ++ PV T+ + + GA
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFF 69
Query: 86 -----------PGTYIKIKPN-LFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLH 133
G Y + N + +S +++ +I P V T +L
Sbjct: 70 YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLE 129
Query: 134 CSA-SGNPPPKISWIREMLPVDTSRNPRYNL-----LTSGAPGALQITNSIEEDQGKYEC 187
C G P P + WI++ +P+D + + + G G L I+N D+G Y+C
Sbjct: 130 CGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDG--GNLLISNVEPIDEGNYKC 187
Query: 188 VAENEVGTEYSPSTMLYVK 206
+A+N VGT S L V+
Sbjct: 188 IAQNLVGTRESSYAKLIVQ 206
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 24/199 (12%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNL-LTSGA--- 85
P+I E P+ VV+ + L+C G P P I W ++ PV T+ + + GA
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFF 69
Query: 86 -----------PGTYIKIKPN-LFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLH 133
G Y + N + +S +++ +I P V T +L
Sbjct: 70 YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLE 129
Query: 134 CSA-SGNPPPKISWIREMLPVDTSRNPRYNL-----LTSGAPGALQITNSIEEDQGKYEC 187
C G P P + WI++ +P+D + + + G G L I+N D+G Y+C
Sbjct: 130 CGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDG--GNLLISNVEPIDEGNYKC 187
Query: 188 VAENEVGTEYSPSTMLYVK 206
+A+N VGT S L V+
Sbjct: 188 IAQNLVGTRESSYAKLIVQ 206
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 81/187 (43%), Gaps = 31/187 (16%)
Query: 34 EAPSTKVVEISHTTVLHCSASGNPPPKISWIR--EMLPVDTSRNPRYNLL---------- 81
+ PS + VL C SG PPP +W+R E++ + R+ +Y+LL
Sbjct: 226 QRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQL---RSKKYSLLGGSNLLISNV 282
Query: 82 TSGAPGTY--IKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGN 139
T GTY + N S +PP F PS S C+ SG
Sbjct: 283 TDDDSGTYTCVVTYKNENISASAELTVLVPPWF---LNHPSNLYAYESMDIEFECAVSGK 339
Query: 140 PPPKISWIRE---MLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTE 196
P P ++W++ ++P D Y + G+ L+I ++ D+G Y+CVAENE G
Sbjct: 340 PVPTVNWMKNGDVVIPSD------YFQIVGGS--NLRILGVVKSDEGFYQCVAENEAGNA 391
Query: 197 YSPSTML 203
S + ++
Sbjct: 392 QSSAQLI 398
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 25/165 (15%)
Query: 43 ISHTTVLHCSASGNPPPKISWIREMLPVD-TSRNPRYNLLTSGA-------PGTYIKIKP 94
+ T +L C G+P P I W + ++ + R +L SGA PG +
Sbjct: 135 MGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRC 194
Query: 95 NLFSPLSVYSADKI------PPGFPQ---ITEAPSTKVVEISHTTVLHCSASGNPPPKIS 145
+ +P S + ++ PG + + PS + VL C SG PPP +
Sbjct: 195 SARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFT 254
Query: 146 WIR--EMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECV 188
W+R E++ + R+ +Y+LL L I+N ++D G Y CV
Sbjct: 255 WLRGEEVIQL---RSKKYSLL---GGSNLLISNVTDDDSGTYTCV 293
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 68/175 (38%), Gaps = 23/175 (13%)
Query: 36 PSTKVVEISHTTVLHCSA-SGNPPPKISWIREMLPVDTSRNPRYNLLTSGA--------- 85
PS V +L+CSA S P I W ++ L + + R L +G+
Sbjct: 28 PSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHS 87
Query: 86 ------PGTYIKIKPNLFSPLSVYS--ADKIPPGFPQITEAPSTKVVEISHTTVLHCSAS 137
G Y + + +L S+ S A + G + + + T +L C
Sbjct: 88 RHHKPDEGLY-QCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVI 146
Query: 138 GNPPPKISWIREMLPVD-TSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAEN 191
G+P P I W + ++ + R +L SGA LQI+ D G Y C A N
Sbjct: 147 GDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGA---LQISRLQPGDSGVYRCSARN 198
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 77/178 (43%), Gaps = 11/178 (6%)
Query: 36 PSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNP-RYNLLTSGAPGTYIKIKP 94
P T+ V+ V C +GNP +SW+++ + S + R + G Y
Sbjct: 350 PPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVR 409
Query: 95 NLFSPLSVYSADKIPPGF--PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLP 152
N + K+ F P I +A + +E + L C A GNP P+ISW E+
Sbjct: 410 NDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISW--ELDG 467
Query: 153 VDTSRNPRYNL-----LTSGAPGALQITNSIEEDQGKYECVAENEVG-TEYSPSTMLY 204
+ N RY + + L IT+ D G Y+C+A+++VG E+S +Y
Sbjct: 468 KKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVY 525
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 80/202 (39%), Gaps = 42/202 (20%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTY 89
P I +A + +E + L C A GNP P+ISW E+ + N RY + G Y
Sbjct: 430 PVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISW--ELDGKKIANNDRYQV------GQY 481
Query: 90 IKIKPNLFSPLSV-----------------------YSADKIPPGFPQITEAPSTKVVEI 126
+ + ++ S L++ +SA G P I + +V
Sbjct: 482 VTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVA- 540
Query: 127 SHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEE--DQGK 184
T ++ C +G P I W R+ + +R + P I ++E DQ
Sbjct: 541 GETLIVTCPVAGYPIDSIVWERDNRALPINRKQKV------FPNGTLIIENVERNSDQAT 594
Query: 185 YECVAENEVGTEYSPSTMLYVK 206
Y CVA+N+ G YS L V+
Sbjct: 595 YTCVAKNQEG--YSARGSLEVQ 614
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 79/191 (41%), Gaps = 39/191 (20%)
Query: 42 EISHTTVLHCSA-SGNPPPKISW------IREMLPVDTSR-NPRYNLLTSGA-----PGT 88
++ LHCS G+ P I W I E L + TSR R ++LT A G
Sbjct: 632 QVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGN 691
Query: 89 YIKIKPNLF------SPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPP 142
+ NL +PL+VY +PP + I E P+ K + C A G P P
Sbjct: 692 FTCHARNLAGHQQFTTPLNVY----VPPRW--ILE-PTDKAFAQGSDAKVECKADGFPKP 744
Query: 143 KISWIR-------EMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGT 195
+++W + E + S N R G L + N + ++G Y C A N +G+
Sbjct: 745 QVTWKKAVGDTPGEYKDLKKSDNIRVE------EGTLHVDNIQKTNEGYYLCEAINGIGS 798
Query: 196 EYSPSTMLYVK 206
S M+ V+
Sbjct: 799 GLSAVIMISVQ 809
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 127 SHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYE 186
S T L C A G P P W + + + N G L I +++ ED GKY
Sbjct: 263 SSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYL 322
Query: 187 CVAENEVGTEYSPSTMLYV 205
CV N VG E S T+L V
Sbjct: 323 CVVNNSVGGE-SVETVLTV 340
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 26/162 (16%)
Query: 44 SHTTVLHCSASGNPPPKISWIR---------EMLPVDTSRNPRYNLLTSGA----PGTYI 90
S T L C A G P P W + ++ D + L+ A G Y+
Sbjct: 263 SSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYL 322
Query: 91 KIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREM 150
+ N SV + + + P T+ V+ V C +GNP +SW+++
Sbjct: 323 CVVNNSVGGESVETVLTVTAPLSAKID-PPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDG 381
Query: 151 LPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENE 192
+ S + L+I + +ED+G Y+C N+
Sbjct: 382 KAIGHSES------------VLRIESVKKEDKGMYQCFVRND 411
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 38 TKVVEISHTT--VLHCSASGNPPPKISWIR 65
T ++ S++T + C ASGNP P+I WIR
Sbjct: 46 TNRIDFSNSTGAEIECKASGNPMPEIIWIR 75
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 121 TKVVEISHTT--VLHCSASGNPPPKISWIR 148
T ++ S++T + C ASGNP P+I WIR
Sbjct: 46 TNRIDFSNSTGAEIECKASGNPMPEIIWIR 75
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 1 TCIGTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPK 60
TC + +PL+VY +PP + I E P+ K + C A G P P+
Sbjct: 693 TCHARNLAGHQQFTTPLNVY----VPPRW--ILE-PTDKAFAQGSDAKVECKADGFPKPQ 745
Query: 61 ISW 63
++W
Sbjct: 746 VTW 748
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 77/180 (42%), Gaps = 28/180 (15%)
Query: 36 PSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTYIKIKPN 95
P+ + L C A GNP P+I W + VD S +P++ T+ P ++I
Sbjct: 213 PAETYALVGQQVTLECFAFGNPVPRIKWRK----VDGSLSPQW---TTAEP--TLQIPSV 263
Query: 96 LFSPLSVYSADK-------------IPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPP 142
F Y + I P+ + S +I C+A+G P P
Sbjct: 264 SFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVISDTEADIGSNLRWGCAAAGKPRP 323
Query: 143 KISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTM 202
+ W+R P+ S+N R +L G L+ + ED G Y+CVAEN+ GT Y+ + +
Sbjct: 324 TVRWLRNGEPL-ASQN-RVEVLA----GDLRFSKLSLEDSGMYQCVAENKHGTIYASAEL 377
Score = 33.9 bits (76), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 131 VLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITN-SIEEDQGKYECVA 189
+L C A +PP W + R+ L+ G L I N + +D G Y+C+A
Sbjct: 25 LLACRARASPPATYRWKMNGTEMKLEPGSRHQLVG----GNLVIMNPTKAQDAGVYQCLA 80
Query: 190 ENEVGTEYSPSTML 203
N VGT S +L
Sbjct: 81 SNPVGTVVSREAIL 94
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 111 GFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPG 170
G P I + P+ + + + T +L C A+G+P P ISW++E R+PR + G
Sbjct: 7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFP-GRDPRATIQEQ---G 62
Query: 171 ALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205
LQI N D G Y CVA + G E S S +L V
Sbjct: 63 TLQIKNLRISDTGTYTCVATSSSG-ETSWSAVLDV 96
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 28 GFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPG 87
G P I + P+ + + + T +L C A+G+P P ISW++E R+PR + G
Sbjct: 7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFP-GRDPRATIQEQGT-- 63
Query: 88 TYIKIKPNLFSPLSVYS 104
++IK S Y+
Sbjct: 64 --LQIKNLRISDTGTYT 78
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 76/184 (41%), Gaps = 20/184 (10%)
Query: 21 SADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNL 80
S ++PP F P + + + + C +G P KI+W ++ + N + L
Sbjct: 192 SEHEVPPFFDL---KPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTL 248
Query: 81 LTSGAPGTYIKIKPNLFSPLSVYSAD-------------KIPPGFPQITEAPSTKVVEIS 127
+ + A T +K+ + Y+++ + PP F I + +++V+
Sbjct: 249 VENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRF--IKKLEPSRIVKQD 306
Query: 128 HTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYEC 187
T C G+P K+ W ++ + S R + + S A L++ N ED G Y C
Sbjct: 307 EHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA--VLEMYNLSVEDSGDYTC 364
Query: 188 VAEN 191
A N
Sbjct: 365 EAHN 368
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 86/209 (41%), Gaps = 24/209 (11%)
Query: 1 TCIGTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPK 60
TC + + K + + L V PP F I + +++V+ T C G+P K
Sbjct: 269 TCYASNVAGKDSCSAQLGVQE----PPRF--IKKLEPSRIVKQDEHTRYECKIGGSPEIK 322
Query: 61 ISWIREMLPVDTSRNPRYNLLTSGA-----------PGTYIKIKPNLFSPLSVYSADKI- 108
+ W ++ + S R + + S A G Y N S ++ K+
Sbjct: 323 VLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK 382
Query: 109 -PPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSG 167
PP F + T H L C G PP ++SW ++ + + + +Y +++
Sbjct: 383 EPPVFRKKPHPVETLKGADVH---LECELQGTPPFQVSWHKDKRELRSGK--KYKIMSEN 437
Query: 168 APGALQITNSIEEDQGKYECVAENEVGTE 196
++ I N D G+Y+C A N+VG++
Sbjct: 438 FLTSIHILNVDSADIGEYQCKASNDVGSD 466
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 69/176 (39%), Gaps = 33/176 (18%)
Query: 49 LHCSASGNPPPKISWIREMLPVDTSRNPRY-------------NLLTSGAPGTYIKIKPN 95
L C G P +I+W +E + ++ P Y N + G Y N
Sbjct: 25 LQCKVDGTPEIRIAWYKEHTKLRSA--PAYKMQFKNNVASLVINKVDHSDVGEYTCKAEN 82
Query: 96 LF-----SPLSVYSADKIPPGFPQITEAPSTKVVEISHT----TVLHCSASGNPPPKISW 146
S + V K+PP F + K+ ++ T C +G+ P ++SW
Sbjct: 83 SVGAVASSAVLVIKERKLPPSFAR-------KLKDVHETLGFPVAFECRINGSEPLQVSW 135
Query: 147 IREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTM 202
++ + N + + + + A LQI + + G+Y C A N +GT S + +
Sbjct: 136 YKDGELLKDDANLQTSFIHNVA--TLQILQTDQSHVGQYNCSASNPLGTASSSAKL 189
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 132 LHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAEN 191
L C G P +I+W +E + ++ P Y + +L I D G+Y C AEN
Sbjct: 25 LQCKVDGTPEIRIAWYKEHTKLRSA--PAYKMQFKNNVASLVINKVDHSDVGEYTCKAEN 82
Query: 192 EVGTEYSPSTML 203
VG S + ++
Sbjct: 83 SVGAVASSAVLV 94
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 17/167 (10%)
Query: 49 LHCSASGNPPPKISWIREMLPVDTSRNPRY---NLLTS--------GAPGTY-IKIKPNL 96
L C G PP ++SW ++ + + + + N LTS G Y K ++
Sbjct: 404 LECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDV 463
Query: 97 FSPLSVYSAD-KIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDT 155
S V S K PP F + ST V E L + G P ++W ++ +
Sbjct: 464 GSDTCVGSITLKAPPRFVKKLSDISTVVGE---EVQLQATIEGAEPISVAWFKDKGEIVR 520
Query: 156 SRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTM 202
+ + + S LQ + + + GKY C +NE GT+ +T+
Sbjct: 521 ESDNIW-ISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATL 566
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 11/86 (12%)
Query: 112 FPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREM--LPVDTSRNPRYNLLTSGAP 169
+PQ T S+++V +L C ASG P P I+W ++ LP D ++ +N
Sbjct: 224 YPQGTA--SSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFN------- 274
Query: 170 GALQITNSIEEDQGKYECVAENEVGT 195
AL+ITN EED G+Y C+A N++G+
Sbjct: 275 KALRITNVSEEDSGEYFCLASNKMGS 300
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 113 PQIT-EAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGA 171
P IT ++ +V+ ++ C A GNP P W R + +++PR ++
Sbjct: 17 PTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLV 76
Query: 172 LQITNSI--EEDQGKYECVAENEVGTEYSPSTMLYV 205
+ + EE +G+Y+C A N+ GT S L V
Sbjct: 77 IDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQV 112
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 73/175 (41%), Gaps = 16/175 (9%)
Query: 29 FPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREM--LPVDTSRNPRYNL------ 80
+PQ T S+++V +L C ASG P P I+W ++ LP D ++ +N
Sbjct: 224 YPQGTA--SSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITN 281
Query: 81 LTSGAPGTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNP 140
++ G Y + N + + ++ P + P ++ L C A+GNP
Sbjct: 282 VSEEDSGEYFCLASNKMGSIRHTISVRVKAA-PYWLDEPKNLILAPGEDGRLVCRANGNP 340
Query: 141 PPKISWIREMLPVDTS-RNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVG 194
P + W+ P+ ++ NP + A + ++ + Y+C NE G
Sbjct: 341 KPTVQWMVNGEPLQSAPPNPNREV----AGDTIIFRDTQISSRAVYQCNTSNEHG 391
Score = 33.5 bits (75), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 72/183 (39%), Gaps = 29/183 (15%)
Query: 30 PQIT-EAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRY---------- 78
P IT ++ +V+ ++ C A GNP P W R + +++PR
Sbjct: 17 PTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLV 76
Query: 79 -NLLTSGAP----GTYIKIKPNLF-SPLSVYSADKI--PPGFPQITEAPSTKVVEISHTT 130
+ + G P G Y N F + LS ++ P +P+ P VV+
Sbjct: 77 IDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPV--VVQEGAPL 134
Query: 131 VLHCS-ASGNPPPKISWI-REMLPVDTSRNPRYNLLTSGAPGALQITNSIEED-QGKYEC 187
L C+ G P P I W+ M P+ + ++ G G L +N + +D Q Y C
Sbjct: 135 TLQCNPPPGLPSPVIFWMSSSMEPITQDKR-----VSQGHNGDLYFSNVMLQDMQTDYSC 189
Query: 188 VAE 190
A
Sbjct: 190 NAR 192
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 67/162 (41%), Gaps = 17/162 (10%)
Query: 43 ISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTYIKIKPNLFSPLSV 102
+ + C +G P KI+W ++ + N + L+ + A T +K+ +
Sbjct: 19 LGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTC 78
Query: 103 YSAD-------------KIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE 149
Y+++ + PP F I + +++V+ T C G+P K+ W ++
Sbjct: 79 YASNVAGKDSCSAQLGVQAPPRF--IKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKD 136
Query: 150 MLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAEN 191
+ S R + + S A L++ N ED G Y C A N
Sbjct: 137 ETEIQESSKFRMSFVESVA--VLEMYNLSVEDSGDYTCEAHN 176
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 86/208 (41%), Gaps = 24/208 (11%)
Query: 1 TCIGTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPK 60
TC + + K + + L V + PP F I + +++V+ T C G+P K
Sbjct: 77 TCYASNVAGKDSCSAQLGV----QAPPRF--IKKLEPSRIVKQDEHTRYECKIGGSPEIK 130
Query: 61 ISWIREMLPVDTSRNPRYNLLTSGA-----------PGTYIKIKPNLFSPLSVYSADKI- 108
+ W ++ + S R + + S A G Y N S ++ K+
Sbjct: 131 VLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK 190
Query: 109 -PPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSG 167
PP F + T H L C G PP ++SW ++ + + + +Y +++
Sbjct: 191 EPPVFRKKPHPVETLKGADVH---LECELQGTPPFQVSWHKDKRELRSGK--KYKIMSEN 245
Query: 168 APGALQITNSIEEDQGKYECVAENEVGT 195
++ I N D G+Y+C A N+VG+
Sbjct: 246 FLTSIHILNVDSADIGEYQCKASNDVGS 273
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 18/186 (9%)
Query: 35 APSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSG---------- 84
AP+ + + V+ C + PP I W + V ++ R+ +L++
Sbjct: 106 APTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKT 165
Query: 85 APGTYIKIKPNLFSPLSVYSAD-----KIPPGFPQITEAPSTKVVEISHTTVLHCSASGN 139
GTY + + + + + D +PP Q ++ + + L C A G
Sbjct: 166 DEGTY-RCEGRILARGEINFKDIQVIVNVPPTV-QARQSIVNATANLGQSVTLVCDADGF 223
Query: 140 PPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSP 199
P P +SW ++ P++ + S L I N + D+ +Y C+AEN+ G E
Sbjct: 224 PEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAG-EQDA 282
Query: 200 STMLYV 205
S L V
Sbjct: 283 SIHLKV 288
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPK-ISWIR---EMLPVDTSRNPRYNLLTSGAP 169
Q+ PS + + + C +G+ K ISW E L + R +
Sbjct: 4 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISV--VWNDDDS 61
Query: 170 GALQITNSIEEDQGKYECVAENEVGTE 196
L I N+ +D G Y+CV E GT+
Sbjct: 62 STLTIYNANIDDAGIYKCVVTAEDGTQ 88
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 67/162 (41%), Gaps = 17/162 (10%)
Query: 43 ISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTYIKIKPNLFSPLSV 102
+ + C +G P KI+W ++ + N + L+ + A T +K+ +
Sbjct: 19 LGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTC 78
Query: 103 YSAD-------------KIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE 149
Y+++ + PP F I + +++V+ T C G+P K+ W ++
Sbjct: 79 YASNVAGKDSCSAQLGVQEPPRF--IKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKD 136
Query: 150 MLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAEN 191
+ S R + + S A L++ N ED G Y C A N
Sbjct: 137 ETEIQESSKFRMSFVESVA--VLEMYNLSVEDSGDYTCEAHN 176
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 85/208 (40%), Gaps = 24/208 (11%)
Query: 1 TCIGTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPK 60
TC + + K + + L V PP F I + +++V+ T C G+P K
Sbjct: 77 TCYASNVAGKDSCSAQLGVQE----PPRF--IKKLEPSRIVKQDEHTRYECKIGGSPEIK 130
Query: 61 ISWIREMLPVDTSRNPRYNLLTSGA-----------PGTYIKIKPNLFSPLSVYSADKI- 108
+ W ++ + S R + + S A G Y N S ++ K+
Sbjct: 131 VLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK 190
Query: 109 -PPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSG 167
PP F + T H L C G PP ++SW ++ + + + +Y +++
Sbjct: 191 EPPVFRKKPHPVETLKGADVH---LECELQGTPPFQVSWHKDKRELRSGK--KYKIMSEN 245
Query: 168 APGALQITNSIEEDQGKYECVAENEVGT 195
++ I N D G+Y+C A N+VG+
Sbjct: 246 FLTSIHILNVDSADIGEYQCKASNDVGS 273
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 67/170 (39%), Gaps = 20/170 (11%)
Query: 41 VEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTYIKIKPNLFSPL 100
E C ASG+P P ISW R ++ N +Y L S T I + P
Sbjct: 16 AERGEEMTFSCRASGSPEPAISWFRNGKLIE--ENEKYILKGSNTELTVRNIINSDGGPY 73
Query: 101 SVYSADKI----PPGFPQITEAPSTKVVEISHTT-------VLHCSASGNPPPKISWIRE 149
+ +K F Q+ P ++++ + T L C A G P P+I+W R
Sbjct: 74 VCRATNKAGEDEKQAFLQVFVQP--HIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRA 131
Query: 150 MLPV-----DTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVG 194
+ D S + R + +L I + D G+Y+C A + +G
Sbjct: 132 VDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG 181
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSR-NPRYN--LLTSGAP 169
P+I E PS +V L+C A G P P I W + V+T + +PR + LL SG+
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 170 GALQITNSIEE--DQGKYECVAENEVGTEYSPSTMLYV 205
L+I + + D+G Y CVA N +G S L V
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSR-NPRYN--LLTSGA 85
P+I E PS +V L+C A G P P I W + V+T + +PR + LL SG+
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 110 PGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAP 169
PG + + +TK+ E + L C G P P I W R + SR +Y + + G
Sbjct: 8 PGIRKEMKDVTTKLGEAAQ---LSCQIVGRPLPDIKWYRFGKELIQSR--KYKMSSDGRT 62
Query: 170 GALQITNSIEEDQGKYECVAENEVGTEYSPSTML 203
L + +ED+G Y C+A NEVG + S +L
Sbjct: 63 HTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLL 96
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 53/151 (35%), Gaps = 28/151 (18%)
Query: 27 PGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGA- 85
PG + + +TK+ E + L C G P P I W R + SR +Y + + G
Sbjct: 8 PGIRKEMKDVTTKLGEAAQ---LSCQIVGRPLPDIKWYRFGKELIQSR--KYKMSSDGRT 62
Query: 86 ------------PGTYIKIKPNLF------SPLSVYSADKIPPGFPQITEAPSTKVVEIS 127
G Y I N S L + + + PG+P + +
Sbjct: 63 HTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGA----VG 118
Query: 128 HTTVLHCSASGNPPPKISWIREMLPVDTSRN 158
T LH G P P ++W + S N
Sbjct: 119 STLRLHVMYIGRPVPAMTWFHGQKLLQNSEN 149
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 104 SADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNL 163
S ++ P F + + V+E VL CS G P P+I+W+ P+ +R+
Sbjct: 6 SGMEVAPSFSSVLK--DCAVIE-GQDFVLQCSVRGTPVPRITWLLNGQPIQYARST---- 58
Query: 164 LTSGAPGALQITNSIEEDQGKYECVAENEVG 194
L I +++ ED G Y C+AEN +G
Sbjct: 59 -CEAGVAELHIQDALPEDHGTYTCLAENALG 88
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 21 SADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRN 75
S ++ P F + + V+E VL CS G P P+I+W+ P+ +R+
Sbjct: 6 SGMEVAPSFSSVLK--DCAVIE-GQDFVLQCSVRGTPVPRITWLLNGQPIQYARS 57
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 26/189 (13%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPV-----DTSRNPRYNLL-TS 83
P I + + E T++ C A G P P+I+W R + D S + R +
Sbjct: 2 PHIIQLKNETTYENGQVTLV-CDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 84 GAPGTYIK-IKPNLFSPLSVYSADKI----PPGFPQITEAPSTKVVEISHTTVLH----- 133
G+ +IK +K + +A +I + I AP IS+ T+ +
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKF----ISNQTIYYSWEGN 116
Query: 134 -----CSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECV 188
C NPP I W R+ L + ++G L+I + + D G+Y C
Sbjct: 117 PINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCT 176
Query: 189 AENEVGTEY 197
A N +GT +
Sbjct: 177 ATNHIGTRF 185
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 12/93 (12%)
Query: 49 LHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTYIKIKP---NLFSPLSVYSA 105
+ C NPP I W R+ L + ++G ++I P N F + +
Sbjct: 120 ISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRK-MILEIAPTSDNDFGRYNCTAT 178
Query: 106 DKIPPGFPQ----ITEAPST----KVVEISHTT 130
+ I F + + + PS+ K++E+S TT
Sbjct: 179 NHIGTRFQEYILALADVPSSPYGVKIIELSQTT 211
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 26/189 (13%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPV-----DTSRNPRYNLL-TS 83
P I + + E T++ C A G P P+I+W R + D S + R +
Sbjct: 2 PHIIQLKNETTYENGQVTLV-CDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 84 GAPGTYIK-IKPNLFSPLSVYSADKI----PPGFPQITEAPSTKVVEISHTTVLH----- 133
G+ +IK +K + +A +I + I AP IS+ T+ +
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKF----ISNQTIYYSWEGN 116
Query: 134 -----CSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECV 188
C NPP I W R+ L + ++G L+I + + D G+Y C
Sbjct: 117 PINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCT 176
Query: 189 AENEVGTEY 197
A N +GT +
Sbjct: 177 ATNHIGTRF 185
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 12/94 (12%)
Query: 49 LHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTYIKIKP---NLFSPLSVYSA 105
+ C NPP I W R+ L + ++G ++I P N F + +
Sbjct: 120 ISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRK-MILEIAPTSDNDFGRYNCTAT 178
Query: 106 DKIPPGFPQ----ITEAPST----KVVEISHTTV 131
+ I F + + + PS+ K++E+S TT
Sbjct: 179 NHIGTRFQEYILALADVPSSPYGVKIIELSQTTA 212
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 117 EAPSTKVVEISHTTVLHCSASGNPPPKISWIR-EMLPVDTSRNPRYNLLTSGAPGALQIT 175
+ P T E T L C A GNP P I W R + P+ +R R + + G L+I
Sbjct: 210 QFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPI--ARKARRH----KSNGILEIP 263
Query: 176 NSIEEDQGKYECVAENEVGTEYSPSTMLY 204
N +ED G YECVAEN G + + +
Sbjct: 264 NFQQEDAGSYECVAENSRGKNVAKGQLTF 292
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 71/183 (38%), Gaps = 27/183 (14%)
Query: 34 EAPSTKVVEISHTTVLHCSASGNPPPKISWIR-EMLPV-DTSRNPRYNLL------TSGA 85
+ P T E T L C A GNP P I W R + P+ +R + N +
Sbjct: 210 QFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQED 269
Query: 86 PGTYIKIKPN------LFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGN 139
G+Y + N L+ Y+ P + QI V + + C A+G
Sbjct: 270 AGSYECVAENSRGKNVAKGQLTFYAQ----PNWVQIINDIH---VAMEESVFWECKANGR 322
Query: 140 PPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSP 199
P P W++ P+ T + G L IT D G Y+CVAEN+ G +S
Sbjct: 323 PKPTYRWLKNGDPLLTRDRIQIE------QGTLNITIVNLSDAGMYQCVAENKHGVIFSS 376
Query: 200 STM 202
+ +
Sbjct: 377 AEL 379
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 132 LHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITN-SIEEDQGKYECVAE 190
L C GNP P I W VD + RY+++ G+L I N + +D G Y+C+A
Sbjct: 28 LSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD----GSLLINNPNKTQDAGTYQCIAT 83
Query: 191 NEVGTEYSPSTML 203
N GT S L
Sbjct: 84 NSFGTIVSREAKL 96
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 57/162 (35%), Gaps = 26/162 (16%)
Query: 49 LHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGA----------PGTYIKIKPNLFS 98
L C GNP P I W VD + RY+++ GTY I N F
Sbjct: 28 LSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFG 87
Query: 99 PLSVYSADKIPPGFPQ--ITEAPSTKVVEISHTTVLHCSASGNPPPK-----ISWIREML 151
+ A K+ + + T ST V VL C PPP +WI
Sbjct: 88 TIVSREA-KLQFAYLENFKTRTRSTVSVRRGQGMVLLCG----PPPHSGELSYAWIFNEY 142
Query: 152 PVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEV 193
P N R+ S G L I + D G Y CV N V
Sbjct: 143 P-SYQDNRRF---VSQETGNLYIAKVEKSDVGNYTCVVTNTV 180
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 117 EAPSTKVVEISHTTVLHCSASGNPPPKISWIR-EMLPVDTSRNPRYNLLTSGAPGALQIT 175
+ P T E T L C A GNP P I W R + P+ +R R + + G L+I
Sbjct: 209 QFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPI--ARKARRH----KSNGILEIP 262
Query: 176 NSIEEDQGKYECVAENEVGTEYSPSTMLY 204
N +ED G YECVAEN G + + +
Sbjct: 263 NFQQEDAGSYECVAENSRGKNVAKGQLTF 291
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 68/183 (37%), Gaps = 27/183 (14%)
Query: 34 EAPSTKVVEISHTTVLHCSASGNPPPKISWIREM---LPVDTSRNPRYNLL-----TSGA 85
+ P T E T L C A GNP P I W R + R+ +L
Sbjct: 209 QFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQED 268
Query: 86 PGTYIKIKPN------LFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGN 139
G+Y + N L+ Y+ P + QI V + + C A+G
Sbjct: 269 AGSYECVAENSRGKNVAKGQLTFYAQ----PNWVQIINDIH---VAMEESVFWECKANGR 321
Query: 140 PPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSP 199
P P W++ P+ T + G L IT D G Y+CVAEN+ G +S
Sbjct: 322 PKPTYRWLKNGDPLLTRDRIQIE------QGTLNITIVNLSDAGMYQCVAENKHGVIFSS 375
Query: 200 STM 202
+ +
Sbjct: 376 AEL 378
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 132 LHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITN-SIEEDQGKYECVAE 190
L C GNP P I W VD + RY+++ G+L I N + +D G Y+C+A
Sbjct: 27 LSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD----GSLLINNPNKTQDAGTYQCIAT 82
Query: 191 NEVGTEYSPSTML 203
N GT S L
Sbjct: 83 NSFGTIVSREAKL 95
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 57/162 (35%), Gaps = 26/162 (16%)
Query: 49 LHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGA----------PGTYIKIKPNLFS 98
L C GNP P I W VD + RY+++ GTY I N F
Sbjct: 27 LSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFG 86
Query: 99 PLSVYSADKIPPGFPQ--ITEAPSTKVVEISHTTVLHCSASGNPPPK-----ISWIREML 151
+ A K+ + + T ST V VL C PPP +WI
Sbjct: 87 TIVSREA-KLQFAYLENFKTRTRSTVSVRRGQGMVLLCG----PPPHSGELSYAWIFNEY 141
Query: 152 PVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEV 193
P N R+ S G L I + D G Y CV N V
Sbjct: 142 P-SYQDNRRF---VSQETGNLYIAKVEKSDVGNYTCVVTNTV 179
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 126 ISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKY 185
++HT L C A G P P W + + + N G L I +++ ED GKY
Sbjct: 232 VAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKY 291
Query: 186 ECVAENEVGTEYSPSTMLYV 205
CV N VG E S T+L V
Sbjct: 292 LCVVNNSVGGE-SVETVLTV 310
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 63/163 (38%), Gaps = 26/163 (15%)
Query: 43 ISHTTVLHCSASGNPPPKISWIR---------EMLPVDTSRNPRYNLLTSGA----PGTY 89
++HT L C A G P P W + ++ D + L+ A G Y
Sbjct: 232 VAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKY 291
Query: 90 IKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE 149
+ + N SV + + + P T+ V+ V C +GNP +SW+++
Sbjct: 292 LCVVNNSVGGESVETVLTVTAPLSAKIDPP-TQTVDFGRPAVFTCQYTGNPIKTVSWMKD 350
Query: 150 MLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENE 192
+ S + L+I + +ED+G Y+C N+
Sbjct: 351 GKAIGHSES------------VLRIESVKKEDKGMYQCFVRND 381
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 38 TKVVEISHTT--VLHCSASGNPPPKISWIR 65
T ++ S++T + C ASGNP P+I WIR
Sbjct: 17 TNRIDFSNSTGAEIECKASGNPMPEIIWIR 46
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 121 TKVVEISHTT--VLHCSASGNPPPKISWIR 148
T ++ S++T + C ASGNP P+I WIR
Sbjct: 17 TNRIDFSNSTGAEIECKASGNPMPEIIWIR 46
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 36 PSTKVVEISHTTVLHCSASGNPPPKISWIRE 66
P T+ V+ V C +GNP +SW+++
Sbjct: 320 PPTQTVDFGRPAVFTCQYTGNPIKTVSWMKD 350
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 126 ISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKY 185
++HT L C A G P P W + + + N G L I +++ ED GKY
Sbjct: 226 VAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKY 285
Query: 186 ECVAENEVGTEYSPSTMLYV 205
CV N VG E S T+L V
Sbjct: 286 LCVVNNSVGGE-SVETVLTV 304
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 63/163 (38%), Gaps = 26/163 (15%)
Query: 43 ISHTTVLHCSASGNPPPKISWIR---------EMLPVDTSRNPRYNLLTSGA----PGTY 89
++HT L C A G P P W + ++ D + L+ A G Y
Sbjct: 226 VAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKY 285
Query: 90 IKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE 149
+ + N SV + + + P T+ V+ V C +GNP +SW+++
Sbjct: 286 LCVVNNSVGGESVETVLTVTAPLSAKIDPP-TQTVDFGRPAVFTCQYTGNPIKTVSWMKD 344
Query: 150 MLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENE 192
+ S + L+I + +ED+G Y+C N+
Sbjct: 345 GKAIGHSES------------VLRIESVKKEDKGMYQCFVRND 375
Score = 30.4 bits (67), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 38 TKVVEISHTT--VLHCSASGNPPPKISWIR 65
T ++ S++T + C ASGNP P+I WIR
Sbjct: 11 TNRIDFSNSTGAEIECKASGNPMPEIIWIR 40
Score = 30.4 bits (67), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 121 TKVVEISHTT--VLHCSASGNPPPKISWIR 148
T ++ S++T + C ASGNP P+I WIR
Sbjct: 11 TNRIDFSNSTGAEIECKASGNPMPEIIWIR 40
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 36 PSTKVVEISHTTVLHCSASGNPPPKISWIRE 66
P T+ V+ V C +GNP +SW+++
Sbjct: 314 PPTQTVDFGRPAVFTCQYTGNPIKTVSWMKD 344
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 111 GFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPG 170
G P I + P + V + T VL C A+G+P P I W ++ + V T ++ R L + G
Sbjct: 7 GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVST-QDSRIKQLEN---G 62
Query: 171 ALQITNSIEEDQGKYECVAENEVG 194
LQI + D G+Y C+A G
Sbjct: 63 VLQIRYAKLGDTGRYTCIASTPSG 86
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 28 GFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSG 84
G P I + P + V + T VL C A+G+P P I W ++ + V T ++ R L +G
Sbjct: 7 GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVST-QDSRIKQLENG 62
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 74/198 (37%), Gaps = 29/198 (14%)
Query: 25 IPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR--EMLPVDTSRNPRYNLLT 82
+P G +IT P +K V L C A+G+P + W + + +P + +N +
Sbjct: 15 VPRG-SKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAVH 73
Query: 83 SGAPGTYI-KIKPNL---FSPLSVYSADKIPPGFP-----------QITEAPSTKVVEIS 127
G Y+ ++ N FS S IP F QI P+++ +
Sbjct: 74 VKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPG 133
Query: 128 HTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYEC 187
T VL C A G+P P W + LP LT + E QG Y C
Sbjct: 134 STLVLQCVAVGSPIPHYQWFKNELP-----------LTHETKKLYMVPYVDLEHQGTYWC 182
Query: 188 VAENEVGTEYSPSTMLYV 205
N+ ++ S + +
Sbjct: 183 HVYNDRDSQDSKKVEIII 200
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 21 SADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPV 70
S D + QI P+++ + T VL C A G+P P W + LP+
Sbjct: 110 SVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL 159
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 60/164 (36%), Gaps = 27/164 (16%)
Query: 51 CSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTYIKIKPNLFSPLSVYSAD---- 106
C S +P P +SW+ V T + R+ +L + K S +Y +
Sbjct: 120 CRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINK----SDEGIYRCEGRVE 175
Query: 107 --------------KIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLP 152
+PP + + E C ASG+P P ISW R
Sbjct: 176 ARGEIDFRDIIVIVNVPPAIS-MPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKL 234
Query: 153 VDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTE 196
++ N +Y L G+ L + N I D G Y C A N+ G +
Sbjct: 235 IE--ENEKYIL--KGSNTELTVRNIINSDGGPYVCRATNKAGED 274
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 42 EISHTTVLHCSASGNPPPKISWIR 65
E C ASG+P P ISW R
Sbjct: 207 ERGEEMTFSCRASGSPEPAISWFR 230
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 60/164 (36%), Gaps = 27/164 (16%)
Query: 51 CSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTYIKIKPNLFSPLSVYSAD---- 106
C S +P P +SW+ V T + R+ +L + K S +Y +
Sbjct: 24 CRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINK----SDEGIYRCEGRVE 79
Query: 107 --------------KIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLP 152
+PP + + E C ASG+P P ISW R
Sbjct: 80 ARGEIDFRDIIVIVNVPPAIS-MPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKL 138
Query: 153 VDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTE 196
++ N +Y + G+ L + N I D G Y C A N+ G +
Sbjct: 139 IE--ENEKY--ILKGSNTELTVRNIINSDGGPYVCRATNKAGED 178
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 42 EISHTTVLHCSASGNPPPKISWIR 65
E C ASG+P P ISW R
Sbjct: 111 ERGEEMTFSCRASGSPEPAISWFR 134
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 114 QITEAPSTKV-VEISHTTVLHCSASGNPPPKISWI--REMLPVDTSRNPRYNLLTSGAPG 170
+I + + +V V+ HT C A G+PPP I W+ R+ L V N R LT G
Sbjct: 386 RIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHL-VSAKSNGR---LTVFPDG 441
Query: 171 ALQITNSIEEDQGKYECVAENEVGTEYSPSTM 202
L++ + +D G Y C+A N G + P+ +
Sbjct: 442 TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHL 473
Score = 30.8 bits (68), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 14/78 (17%)
Query: 31 QITEAPSTKV-VEISHTTVLHCSASGNPPPKISWI--REMLPVDTSRNPRYNLLTSGA-- 85
+I + + +V V+ HT C A G+PPP I W+ R+ L V N R + G
Sbjct: 386 RIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHL-VSAKSNGRLTVFPDGTLE 444
Query: 86 --------PGTYIKIKPN 95
GTY+ I N
Sbjct: 445 VRYAQVQDNGTYLCIAAN 462
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 74/189 (39%), Gaps = 27/189 (14%)
Query: 44 SHTTVLHCSASGNPPPKISWIREMLPVDTS--------RNPRYNLLTSGA----PGTYIK 91
++T C A+GNP P ISW++ R+ +++L+ G Y
Sbjct: 138 ANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC 197
Query: 92 IKPNLFSPL-SVYSADKIP--PGFPQITEA-PSTKVVEISHTTVLHCSASGNPPPKISWI 147
+ N F + Y+ D + P P + P+ + + HC + P I W+
Sbjct: 198 VVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL 257
Query: 148 REMLPVDTSRNPRYN-----LLTSGAP------GALQITNSIEEDQGKYECVAENEVGTE 196
+ + + P L T+GA L + N ED G+Y C+A N +G
Sbjct: 258 KHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFS 317
Query: 197 YSPSTMLYV 205
+ + ++ +
Sbjct: 318 HHSAWLVVL 326
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 126 ISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKY 185
+ L C A GNP P I W + + P+ ++ + TSGA L+I N ED+G Y
Sbjct: 127 MGQNVTLECFALGNPVPDIRWRKVLEPMPSTAE----ISTSGA--VLKIFNIQLEDEGIY 180
Query: 186 ECVAENEVGTE 196
EC AEN G +
Sbjct: 181 ECEAENIRGKD 191
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 43 ISHTTVLHCSASGNPPPKISWIREMLPV 70
+ L C A GNP P I W + + P+
Sbjct: 127 MGQNVTLECFALGNPVPDIRWRKVLEPM 154
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 28/178 (15%)
Query: 44 SHTTVLHCSASGNPPPKISWIREMLPVDTS--------RNPRYNLLTSGA----PGTYIK 91
++T C A+GNP P ISW++ R+ +++L+ G Y
Sbjct: 30 ANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC 89
Query: 92 IKPNLFSPL-SVYSADKIP--PGFPQITEA-PSTKVVEISHTTVLHCSASGNPPPKISWI 147
+ N F + Y+ D + P P + P+ + + HC + P I W+
Sbjct: 90 VVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL 149
Query: 148 REMLPVDTSR-----NPRYNLLTSG------APGALQITNSIEEDQGKYECVAENEVG 194
+ + V+ S+ P +L S A L++ N E D G+Y C A N +G
Sbjct: 150 KH-VEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIG 206
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 127 SHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSG-----APGALQITNSIEED 181
++T C A+GNP P ISW++ R R G +L + + + D
Sbjct: 30 ANTVRFRCPAAGNPTPSISWLK------NGREFRGEHRIGGIKLRHQQWSLVMESVVPSD 83
Query: 182 QGKYECVAENEVGT 195
+G Y CV EN+ G+
Sbjct: 84 RGNYTCVVENKFGS 97
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 61/148 (41%), Gaps = 11/148 (7%)
Query: 57 PPPKISWIREMLPVDTSRNPRYNLLTSGAPGTYIKIKPNLFSPLSVYSADKIPPGFPQIT 116
P K ++ E+ T +L Y + + + ++ + ++ G P +
Sbjct: 173 PNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVV 232
Query: 117 EAPSTKVVEISHTTVLHCSASGNPPPKISWIR--EMLPVDTSRNPRYNLLTSGAPGALQI 174
K + ++ C+ G+PPP++SW++ + L D N ++ +G I
Sbjct: 233 TIQEGKALNLT------CNVWGDPPPEVSWLKNEKALASDDHCNLKFE---AGRTAYFTI 283
Query: 175 TNSIEEDQGKYECVAENEVGTEYSPSTM 202
D GKY V +N+ G+E S T+
Sbjct: 284 NGVSTADSGKYGLVVKNKYGSETSDFTV 311
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 24 KIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR--EMLPVDTSRNPRY 78
++ G P + K + ++ C+ G+PPP++SW++ + L D N ++
Sbjct: 223 RVLGGLPDVVTIQEGKALNLT------CNVWGDPPPEVSWLKNEKALASDDHCNLKF 273
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 126 ISHTTVLHCSASGNPPPKISWIREMLPVDTSRN-PRYNLLTSGAPGALQITNSIEEDQGK 184
+S + L C A G P P ++W ++ P++ N +Y+ G+ L I + D+ +
Sbjct: 27 LSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSE--LIIKKVDKSDEAE 84
Query: 185 YECVAENEVGTE 196
Y C+AEN+ G +
Sbjct: 85 YICIAENKAGEQ 96
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 43 ISHTTVLHCSASGNPPPKISWIREMLPVDTSRN-PRYNLLTSGA 85
+S + L C A G P P ++W ++ P++ N +Y+ G+
Sbjct: 27 LSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGS 70
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 124 VEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQG 183
VE++ + L C A P P W + + + N G L I +++ ED G
Sbjct: 227 VELASSYSLLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSG 286
Query: 184 KYECVAENEVGTEYSPSTMLYV 205
KY CV N VG E S T+L V
Sbjct: 287 KYLCVVNNSVGGE-SVETVLTV 307
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 26/165 (15%)
Query: 41 VEISHTTVLHCSASGNPPPKISWIR---------EMLPVDTSRNPRYNLLTSGA----PG 87
VE++ + L C A P P W + ++ D + L+ A G
Sbjct: 227 VELASSYSLLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSG 286
Query: 88 TYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWI 147
Y+ + N SV + + + P T+ V+ V C +GNP +SW+
Sbjct: 287 KYLCVVNNSVGGESVETVLTVTAPLSAKIDPP-TQTVDFGRPAVFTCQYTGNPIKTVSWM 345
Query: 148 REMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENE 192
++ + S + L+I + +ED+G Y+C N+
Sbjct: 346 KDGKAIGHSES------------VLRIESVKKEDKGMYQCFVRND 378
Score = 30.8 bits (68), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 38 TKVVEISHTT--VLHCSASGNPPPKISWIR 65
T ++ S++T + C ASGNP P+I WIR
Sbjct: 11 TNRIDFSNSTGAEIECKASGNPMPEIIWIR 40
Score = 30.8 bits (68), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 121 TKVVEISHTT--VLHCSASGNPPPKISWIR 148
T ++ S++T + C ASGNP P+I WIR
Sbjct: 11 TNRIDFSNSTGAEIECKASGNPMPEIIWIR 40
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 36 PSTKVVEISHTTVLHCSASGNPPPKISWIRE 66
P T+ V+ V C +GNP +SW+++
Sbjct: 317 PPTQTVDFGRPAVFTCQYTGNPIKTVSWMKD 347
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/147 (20%), Positives = 60/147 (40%), Gaps = 9/147 (6%)
Query: 57 PPPKISWIREMLPVDTSRNPRYNLLTSGAPGTYIKIKPNLFSPLSVYSADKIPPGFPQIT 116
P K ++ E+ T +L Y + + + ++ + ++ G P +
Sbjct: 68 PNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVV 127
Query: 117 EAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNL-LTSGAPGALQIT 175
K + ++ C+ G+PPP++SW++ + ++ NL +G I
Sbjct: 128 TIQEGKALNLT------CNVWGDPPPEVSWLKNEKAL--AQTDHCNLKFEAGRTAYFTIN 179
Query: 176 NSIEEDQGKYECVAENEVGTEYSPSTM 202
D GKY V +N+ G+E S T+
Sbjct: 180 GVSTADSGKYGLVVKNKYGSETSDFTV 206
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 24 KIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR 65
++ G P + K + ++ C+ G+PPP++SW++
Sbjct: 118 RVLGGLPDVVTIQEGKALNLT------CNVWGDPPPEVSWLK 153
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 14/93 (15%)
Query: 111 GFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLP--------VDTSRNPRYN 162
GF Q AP ++ + + LHC A G+P P+I W E D +R R +
Sbjct: 23 GFVQ---APLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVH 79
Query: 163 LLTS---GAPGALQITNSIEEDQGKYECVAENE 192
+ + A + I +EED G YEC A N+
Sbjct: 80 IHATYHQHAASTISIDTLVEEDTGTYECRASND 112
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 28 GFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE 66
GF Q AP ++ + + LHC A G+P P+I W E
Sbjct: 23 GFVQ---APLSQQRWVGGSVELHCEAVGSPVPEIQWWFE 58
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 14/93 (15%)
Query: 111 GFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLP--------VDTSRNPRYN 162
GF Q AP ++ + + LHC A G+P P+I W E D +R R +
Sbjct: 23 GFVQ---APLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARLDRVH 79
Query: 163 LLTS---GAPGALQITNSIEEDQGKYECVAENE 192
+ + A + I +EED G YEC A N+
Sbjct: 80 IHATYHQHAASTISIDTLVEEDTGTYECRASND 112
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 28 GFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE 66
GF Q AP ++ + + LHC A G+P P+I W E
Sbjct: 23 GFVQ---APLSQQRWVGGSVELHCEAVGSPVPEIQWWFE 58
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 73/202 (36%), Gaps = 36/202 (17%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNP------------- 76
P T+ + VV T SG P P++SW R+ + TS P
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKL 65
Query: 77 -----------RYNLLTSGAPGTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVE 125
RY+L + G L A+ PP F Q ++ + V
Sbjct: 66 TIPAVTKANSGRYSLKATNGSGQATSTAELLV------KAETAPPNFVQRLQSMT---VR 116
Query: 126 ISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKY 185
L +G P P + + R+ + +S + + + G +L I + ED G Y
Sbjct: 117 QGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLD--FQISQEGDLYSLLIAEAYPEDSGTY 174
Query: 186 ECVAENEVGTEYSPSTMLYVKG 207
A N VG S + +L V+G
Sbjct: 175 SVNATNSVGRATSTAELL-VQG 195
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 70/198 (35%), Gaps = 35/198 (17%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNP------------- 76
P T+ + VV T SG P P++SW R+ + TS P
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKL 65
Query: 77 -----------RYNLLTSGAPGTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVE 125
RY+L + G L A+ PP F Q ++ + V
Sbjct: 66 TIPAVTKANSGRYSLKATNGSGQATSTAELLV------KAETAPPNFVQRLQSMT---VR 116
Query: 126 ISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKY 185
L +G P P + + R+ + +S + + + G +L I + ED G Y
Sbjct: 117 QGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLD--FQISQEGDLYSLLIAEAYPEDSGTY 174
Query: 186 ECVAENEVGTEYSPSTML 203
A N VG S + +L
Sbjct: 175 SVNATNSVGRATSTAELL 192
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 132 LHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAEN 191
C G P P ++W+R+ + TS R+ + T+ +I++ D+G Y V EN
Sbjct: 34 FSCDTDGEPVPTVTWLRKGQVLSTS--ARHQVTTTKYKSTFEISSVQASDEGNYSVVVEN 91
Query: 192 EVGTEYSPSTM 202
G + + T+
Sbjct: 92 SEGKQEAEFTL 102
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 49 LHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTY 89
C G P P ++W+R+ + TS R+ + T+ T+
Sbjct: 34 FSCDTDGEPVPTVTWLRKGQVLSTS--ARHQVTTTKYKSTF 72
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 132 LHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAEN 191
C G P P ++W+R+ + TS R+ + T+ +I++ D+G Y V EN
Sbjct: 28 FSCDTDGEPVPTVTWLRKGQVLSTS--ARHQVTTTKYKSTFEISSVQASDEGNYSVVVEN 85
Query: 192 EVGTEYSPSTM 202
G + + T+
Sbjct: 86 SEGKQEAEFTL 96
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR--EMLPVDTSRNPRYNLLTSGAPG 170
P IT + I + + C+ASGNPPP+I W + E L D+ ++
Sbjct: 667 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSG------IVLKDGNR 720
Query: 171 ALQITNSIEEDQGKYECVAENEVG 194
L I +ED+G Y C A + +G
Sbjct: 721 NLTIRRVRKEDEGLYTCQACSVLG 744
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE 66
P IT + I + + C+ASGNPPP+I W ++
Sbjct: 667 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKD 703
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR--EMLPVDTSRNPRYNLLTSGAPG 170
P IT + I + + C+ASGNPPP+I W + E L D+ ++
Sbjct: 11 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSG------IVLKDGNR 64
Query: 171 ALQITNSIEEDQGKYECVA 189
L I +ED+G Y C A
Sbjct: 65 NLTIRRVRKEDEGLYTCQA 83
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE 66
P IT + I + + C+ASGNPPP+I W ++
Sbjct: 11 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKD 47
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR--EMLPVDTSRNPRYNLLTSGAPG 170
P P +K V + L C S PPPK+ W R EM+ +T R Y T
Sbjct: 16 PMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRV-- 73
Query: 171 ALQITNSIEEDQGKYECVAENEVG 194
L I + ++D G Y A NE G
Sbjct: 74 TLLIKDVNKKDAGWYTVSAVNEAG 97
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR--EMLPVDTSR 74
P P +K V + L C S PPPK+ W R EM+ +T R
Sbjct: 16 PMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDR 62
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 73/192 (38%), Gaps = 29/192 (15%)
Query: 46 TTVLHCSASGNPPPKISWIR---EMLPVDT--SRNPRYN----LLTSGAP---GTYIKIK 93
T C +SG P P + W++ E P RY ++ S P G Y I
Sbjct: 34 TVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIV 93
Query: 94 PNLFSPLS-VYSADKIP--PGFPQITEA-PSTKVVEISHTTVLHCSASGNPPPKISWIRE 149
N + ++ Y D + P P + P+ K V + C +P P I W++
Sbjct: 94 ENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKH 153
Query: 150 MLPVDTSRNPRYNL------------LTSGAPGALQITNSIEEDQGKYECVAENEVGTEY 197
+ V+ S+ NL T L + N ED G+Y C+A N +G +
Sbjct: 154 -IEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSH 212
Query: 198 SPSTMLYVKGTQ 209
+ + ++ +
Sbjct: 213 HSAWLTVLEALE 224
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 73/192 (38%), Gaps = 29/192 (15%)
Query: 46 TTVLHCSASGNPPPKISWIR---EMLPVDT--SRNPRYN----LLTSGAP---GTYIKIK 93
T C +SG P P + W++ E P RY ++ S P G Y I
Sbjct: 33 TVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIV 92
Query: 94 PNLFSPLS-VYSADKIP--PGFPQITEA-PSTKVVEISHTTVLHCSASGNPPPKISWIRE 149
N + ++ Y D + P P + P+ K V + C +P P I W++
Sbjct: 93 ENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKH 152
Query: 150 MLPVDTSRNPRYNL------------LTSGAPGALQITNSIEEDQGKYECVAENEVGTEY 197
+ V+ S+ NL T L + N ED G+Y C+A N +G +
Sbjct: 153 -IEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSH 211
Query: 198 SPSTMLYVKGTQ 209
+ + ++ +
Sbjct: 212 HSAWLTVLEALE 223
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 73/192 (38%), Gaps = 29/192 (15%)
Query: 46 TTVLHCSASGNPPPKISWIR---EMLPVDT--SRNPRYN----LLTSGAP---GTYIKIK 93
T C +SG P P + W++ E P RY ++ S P G Y I
Sbjct: 33 TVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIV 92
Query: 94 PNLFSPLS-VYSADKIP--PGFPQITEA-PSTKVVEISHTTVLHCSASGNPPPKISWIRE 149
N + ++ Y D + P P + P+ K V + C +P P I W++
Sbjct: 93 ENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKH 152
Query: 150 MLPVDTSRNPRYNL------------LTSGAPGALQITNSIEEDQGKYECVAENEVGTEY 197
+ V+ S+ NL T L + N ED G+Y C+A N +G +
Sbjct: 153 -IEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSH 211
Query: 198 SPSTMLYVKGTQ 209
+ + ++ +
Sbjct: 212 HSAWLTVLEALE 223
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 132 LHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAEN 191
C G P P++ W ++ PV SR+ + + G +L I+ +D KY C A N
Sbjct: 61 FDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNC-SLTISEVCGDDDAKYTCKAVN 119
Query: 192 EVGTEYSPSTML 203
+G + +L
Sbjct: 120 SLGEATCTAELL 131
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 122 KVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEED 181
+VVE S C G P P++ W ++ PV SR+ + + G +L I+ +D
Sbjct: 52 EVVEGS-AARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNC-SLTISEVCGDD 109
Query: 182 QGKYECVAENEVGTEYSPSTML 203
KY C A N +G + +L
Sbjct: 110 DAKYTCKAVNSLGEATCTAELL 131
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 60/156 (38%), Gaps = 34/156 (21%)
Query: 63 WIREMLPVDTSRNPRYNLLTSGAPGTYI-KIKPNLFSPLSVYSADKIPPGFPQITEAPST 121
WI++M P +T+ R N G YI ++ N F+ + P I E P+
Sbjct: 303 WIKDMAPSNTACCARCNT-PPNLKGRYIGELDQNYFTCYA-----------PVIVEPPAD 350
Query: 122 KVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGA---------PGAL 172
V L C AS +SWI P ++T GA G L
Sbjct: 351 LNVTEGMAAELKCRAS-TSLTSVSWI----------TPNGTVMTHGAYKVRIAVLSDGTL 399
Query: 173 QITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGT 208
TN +D G Y C+ N VG + +T L V GT
Sbjct: 400 NFTNVTVQDTGMYTCMVSNSVGNTTASAT-LNVTGT 434
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 124 VEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQG 183
V ++ G P P +SW+R PV + R+ G L+I + D G
Sbjct: 17 VREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQR-RFAEEAEGGLCRLRILAAERGDAG 75
Query: 184 KYECVAENEVGTEYSPSTMLYVKG 207
Y C A NE G + L V+G
Sbjct: 76 FYTCKAVNEYGARQCEAR-LEVRG 98
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 27/186 (14%)
Query: 44 SHTTVLHCSASGNPPPKISWIREMLPVDTS--------RNPRYNLLTSGA----PGTYIK 91
++T C A GNP P + W++ RN ++L+ G Y
Sbjct: 25 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 84
Query: 92 IKPNLFSPLS-VYSADKIP--PGFPQITEA-PSTKVVEISHTTVLHCSASGNPPPKISWI 147
+ N + ++ Y D + P P + P+ + C + P I WI
Sbjct: 85 VVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 144
Query: 148 REMLPVDTSRNPRY--NLLTSGAPGA---------LQITNSIEEDQGKYECVAENEVGTE 196
+ + + P L A G L I N ED G+Y C+A N +G
Sbjct: 145 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 204
Query: 197 YSPSTM 202
+ + +
Sbjct: 205 FHSAWL 210
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE---MLPVDTSRNPRYNLLTSGAP 169
P IT ++ +++C + G P P+ W ++ + ++ + R+ ++
Sbjct: 93 PDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENY 152
Query: 170 GALQITN-SIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
L I N I ED G+YEC A N +G+ S ST+L V+
Sbjct: 153 TELNIVNLQITEDPGEYECNATNSIGSA-SVSTVLRVR 189
>pdb|2Q86|A Chain A, Structure Of The Mouse Invariant Nkt Cell Receptor
Valpha14
pdb|2Q86|C Chain C, Structure Of The Mouse Invariant Nkt Cell Receptor
Valpha14
Length = 229
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 14/106 (13%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------MLPV-----DTSRNPRY 161
Q+ ++P + VV VL C+ S P + W ++ +L V D + N RY
Sbjct: 3 QVEQSPQSLVVRQGENCVLQCNYSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGRY 62
Query: 162 N--LLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205
+ L L IT ++ +D Y CV + + T L V
Sbjct: 63 SATLDKDAKHSTLHITATLLDDTATYFCVVGDRGSALFGSGTQLIV 108
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 27/186 (14%)
Query: 44 SHTTVLHCSASGNPPPKISWIREMLPVDTS--------RNPRYNLLTSGA----PGTYIK 91
++T C A GNP P + W++ RN ++L+ G Y
Sbjct: 26 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 85
Query: 92 IKPNLFSPLS-VYSADKIP--PGFPQITEA-PSTKVVEISHTTVLHCSASGNPPPKISWI 147
+ N + ++ Y D + P P + P+ + C + P I WI
Sbjct: 86 VVENEYGSINHTYHLDVVERWPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 145
Query: 148 REMLPVDTSRNPRY--NLLTSGAPGA---------LQITNSIEEDQGKYECVAENEVGTE 196
+ + + P L A G L I N ED G+Y C+A N +G
Sbjct: 146 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
Query: 197 YSPSTM 202
+ + +
Sbjct: 206 FHSAWL 211
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 27/186 (14%)
Query: 44 SHTTVLHCSASGNPPPKISWIREMLPVDTS--------RNPRYNLLTSGA----PGTYIK 91
++T C A GNP P + W++ RN ++L+ G Y
Sbjct: 26 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 85
Query: 92 IKPNLFSPLS-VYSADKIP--PGFPQITEA-PSTKVVEISHTTVLHCSASGNPPPKISWI 147
+ N + ++ Y D + P P + P+ + C + P I WI
Sbjct: 86 VVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 145
Query: 148 REMLPVDTSRNPRY--NLLTSGAPGA---------LQITNSIEEDQGKYECVAENEVGTE 196
+ + + P L A G L I N ED G+Y C+A N +G
Sbjct: 146 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
Query: 197 YSPSTM 202
+ + +
Sbjct: 206 FHSAWL 211
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 66/186 (35%), Gaps = 27/186 (14%)
Query: 44 SHTTVLHCSASGNPPPKISWIREMLPVDTS--------RNPRYNLLTSGA----PGTYIK 91
++T C A GNP P + W++ RN ++L+ G Y
Sbjct: 24 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 83
Query: 92 IKPNLFSPLS-VYSADKIPPGFPQ-ITEA--PSTKVVEISHTTVLHCSASGNPPPKISWI 147
+ N + ++ Y D + + I +A P+ + C + P I WI
Sbjct: 84 VVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 143
Query: 148 REMLPVDTSRNPRY--NLLTSGAPGA---------LQITNSIEEDQGKYECVAENEVGTE 196
+ + + P L A G L I N ED G+Y C+A N +G
Sbjct: 144 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 203
Query: 197 YSPSTM 202
+ + +
Sbjct: 204 FHSAWL 209
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 66/186 (35%), Gaps = 27/186 (14%)
Query: 44 SHTTVLHCSASGNPPPKISWIREMLPVDTS--------RNPRYNLLTSGA----PGTYIK 91
++T C A GNP P + W++ RN ++L+ G Y
Sbjct: 26 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 85
Query: 92 IKPNLFSPLS-VYSADKIPPGFPQ-ITEA--PSTKVVEISHTTVLHCSASGNPPPKISWI 147
+ N + ++ Y D + + I +A P+ + C + P I WI
Sbjct: 86 VVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 145
Query: 148 REMLPVDTSRNPRY--NLLTSGAPGA---------LQITNSIEEDQGKYECVAENEVGTE 196
+ + + P L A G L I N ED G+Y C+A N +G
Sbjct: 146 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
Query: 197 YSPSTM 202
+ + +
Sbjct: 206 FHSAWL 211
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 97 FSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSA-SGNPPPKISWIRE---MLP 152
+ +S++ +PP P I+ PS+ V I + VL CS G+PP + SW ++ ML
Sbjct: 92 YGEVSIHLTVLVPPSKPTIS-VPSS--VTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLT 148
Query: 153 VDTSRNPRY---NLLTSGAPGALQITNSIEEDQGKYECVAENEVGT 195
D + + + G L D G+Y C A+N GT
Sbjct: 149 ADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGT 194
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 12/75 (16%)
Query: 132 LHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNS---------IEEDQ 182
L C+ SG P++ W + + T+ YN + AP A ++T S +D
Sbjct: 21 LTCTYSGFSSPRVEW--KFVQGSTTALVCYNSQIT-APYADRVTFSSSGITFSSVTRKDN 77
Query: 183 GKYECVAENEVGTEY 197
G+Y C+ E G Y
Sbjct: 78 GEYTCMVSEEGGQNY 92
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 64/186 (34%), Gaps = 27/186 (14%)
Query: 44 SHTTVLHCSASGNPPPKISWIREMLPVDTS--------RNPRYNLLTSGA----PGTYIK 91
++T C A GNP P W++ RN ++L+ G Y
Sbjct: 26 ANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTC 85
Query: 92 IKPNLFSPLS-VYSADKIP--PGFPQITEA-PSTKVVEISHTTVLHCSASGNPPPKISWI 147
+ N + ++ Y D + P P + P+ + C + P I WI
Sbjct: 86 VVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 145
Query: 148 REMLPVDTSRNPRY--NLLTSGAPGA---------LQITNSIEEDQGKYECVAENEVGTE 196
+ + + P L A G L I N ED G+Y C+A N +G
Sbjct: 146 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
Query: 197 YSPSTM 202
+ + +
Sbjct: 206 FHSAWL 211
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Query: 111 GF-PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAP 169
GF P +AP V+ + C SG P P +SW + PV + + +G
Sbjct: 7 GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVH 66
Query: 170 GALQITNSIEEDQGKYECVAENEVG 194
+L I D G Y C+A N G
Sbjct: 67 -SLIIEPVTSRDAGIYTCIATNRAG 90
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 28 GF-PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPV 70
GF P +AP V+ + C SG P P +SW + PV
Sbjct: 7 GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPV 50
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/176 (19%), Positives = 63/176 (35%), Gaps = 25/176 (14%)
Query: 44 SHTTVLHCSASGNPPPKISWIREMLPVDTS--------RNPRYNLLTSGA----PGTYIK 91
++T C A GNP P + W++ RN ++L+ G Y
Sbjct: 34 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 93
Query: 92 IKPNLFSPLS-VYSADKIPPGFPQ-ITEA--PSTKVVEISHTTVLHCSASGNPPPKISWI 147
+ N + ++ Y D + + I +A P+ + C + P I WI
Sbjct: 94 VVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 153
Query: 148 REMLPVDTSRNP---------RYNLLTSGAPGALQITNSIEEDQGKYECVAENEVG 194
+ + + P +++ + S L + N E D G+Y C N +G
Sbjct: 154 KHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIG 209
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 17/77 (22%)
Query: 127 SHTTVLHCSASGNPPPKISWIREMLPVDTS--------RNPRYNLLTSGAPGALQITNSI 178
++T C A GNP P + W++ RN ++L+ + + +
Sbjct: 34 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI---------MESVV 84
Query: 179 EEDQGKYECVAENEVGT 195
D+G Y CV ENE G+
Sbjct: 85 PSDKGNYTCVVENEYGS 101
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/174 (20%), Positives = 60/174 (34%), Gaps = 25/174 (14%)
Query: 46 TTVLHCSASGNPPPKISWIREMLPVDTS--------RNPRYNLLTSGA----PGTYIKIK 93
T C A GNP P + W++ RN ++L+ G Y +
Sbjct: 36 TVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVV 95
Query: 94 PNLFSPLS-VYSADKIP--PGFPQITEA-PSTKVVEISHTTVLHCSASGNPPPKISWIRE 149
N + ++ Y D + P P + P+ + C + P I WI+
Sbjct: 96 ENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKH 155
Query: 150 MLPVDTSRNP---------RYNLLTSGAPGALQITNSIEEDQGKYECVAENEVG 194
+ + P +++ + S L + N E D G+Y C N +G
Sbjct: 156 VEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIG 209
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 17/75 (22%)
Query: 129 TTVLHCSASGNPPPKISWIREMLPVDTS--------RNPRYNLLTSGAPGALQITNSIEE 180
T C A GNP P + W++ RN ++L+ + + +
Sbjct: 36 TVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI---------MESVVPS 86
Query: 181 DQGKYECVAENEVGT 195
D+G Y CV ENE G+
Sbjct: 87 DKGNYTCVVENEYGS 101
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/176 (19%), Positives = 61/176 (34%), Gaps = 25/176 (14%)
Query: 44 SHTTVLHCSASGNPPPKISWIREMLPVDTS--------RNPRYNLLTSGA----PGTYIK 91
++T C A GNP P W++ RN ++L+ G Y
Sbjct: 33 ANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTC 92
Query: 92 IKPNLFSPLS-VYSADKIP--PGFPQITEA-PSTKVVEISHTTVLHCSASGNPPPKISWI 147
+ N + ++ Y D + P P + P+ + C + P I WI
Sbjct: 93 VVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 152
Query: 148 REMLPVDTSRNP---------RYNLLTSGAPGALQITNSIEEDQGKYECVAENEVG 194
+ + + P +++ + S L + N E D G+Y C N +G
Sbjct: 153 KHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIG 208
Score = 33.9 bits (76), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 17/77 (22%)
Query: 127 SHTTVLHCSASGNPPPKISWIREMLPVDTS--------RNPRYNLLTSGAPGALQITNSI 178
++T C A GNP P W++ RN ++L+ +
Sbjct: 33 ANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESV---------V 83
Query: 179 EEDQGKYECVAENEVGT 195
D+G Y CV ENE G+
Sbjct: 84 PSDKGNYTCVVENEYGS 100
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 36/94 (38%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQ 173
++ AP V L+CS G P I W+++ V + G L
Sbjct: 4 KLMGAPVKLTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLS 63
Query: 174 ITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207
+ + D G+Y C E+ TE S L V+G
Sbjct: 64 LKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG 97
>pdb|3HE6|C Chain C, Crystal Structure Of Mouse Cd1d-Alpha-Galactosylceramide
With Mouse Valpha14-Vbeta8.2 Nkt Tcr
pdb|3HE7|C Chain C, Crystal Structure Of Mouse Cd1d-Alpha-Galactosylceramide
With Mouse Valpha14-Vbeta7 Nkt Tcr
pdb|3ARB|C Chain C, Ternary Crystal Structure Of The Nkt
Tcr-Cd1d-Alpha-Galactosylceramide Analogue-Och
pdb|3ARD|C Chain C, Ternary Crystal Structure Of The Mouse Nkt
Tcr-Cd1d-3'deoxy-Alpha- Galactosylceramide
pdb|3ARE|C Chain C, Ternary Crystal Structure Of The Mouse Nkt
Tcr-Cd1d-4'deoxy-Alpha- Galactosylceramide
pdb|3ARF|C Chain C, Ternary Crystal Structure Of The Mouse Nkt Tcr-Cd1d-C20:2
pdb|3ARG|C Chain C, Ternary Crystal Structure Of The Mouse Nkt Tcr-Cd1d-Alpha-
Glucosylceramide(C20:2)
pdb|3SCM|C Chain C, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Isoglobotrihexosylceramide
pdb|3SDA|C Chain C, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Beta-Galactosylceramide
pdb|3SDC|C Chain C, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Globotrihexosylceramide
pdb|3SDD|C Chain C, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Beta-Lactosylceramide
pdb|3TN0|C Chain C, Structure Of Mouse Va14vb8.2nkt Tcr-Mouse
Cd1d-A-C-Galactosylceramide Complex
pdb|3QI9|C Chain C, Crystal Structure Of Mouse Cd1d-Alpha-Phosphotidylinositol
With Mouse Valpha14-Vbeta6 2a3-D Nkt Tcr
Length = 207
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 19/112 (16%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------MLPV-----DTSRNPRY 161
Q+ ++P + VV +VL C+ S P + W ++ L V D + N RY
Sbjct: 2 QVEQSPQSLVVRQGENSVLQCNYSVTPDNHLRWFKQDTGKGLVSLTVLVDQKDKTSNGRY 61
Query: 162 N--LLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV-KGTQV 210
+ L L IT ++ +D Y CV VG S L+ GTQ+
Sbjct: 62 SATLDKDAKHSTLHITATLLDDTATYICV----VGDRGSALGRLHFGAGTQL 109
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 13/86 (15%)
Query: 31 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------MLPV-----DTSRNPRY 78
Q+ ++P + VV +VL C+ S P + W ++ L V D + N RY
Sbjct: 2 QVEQSPQSLVVRQGENSVLQCNYSVTPDNHLRWFKQDTGKGLVSLTVLVDQKDKTSNGRY 61
Query: 79 NL-LTSGAPGTYIKIKPNLFSPLSVY 103
+ L A + + I L + Y
Sbjct: 62 SATLDKDAKHSTLHITATLLDDTATY 87
>pdb|3TO4|C Chain C, Structure Of Mouse
Valpha14vbeta2-Mousecd1d-Alpha-Galactosylceramide
Length = 212
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 19/112 (16%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------MLPV-----DTSRNPRY 161
Q+ ++P + VV +VL C+ S P + W ++ L V D + N RY
Sbjct: 2 QVEQSPQSLVVRQGENSVLQCNYSVTPDNHLRWFKQDTGKGLVSLTVLVDQKDKTSNGRY 61
Query: 162 N--LLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV-KGTQV 210
+ L L IT ++ +D Y CV VG S L+ GTQ+
Sbjct: 62 SATLDKDAKHSTLHITATLLDDTATYICV----VGDRGSALGRLHFGAGTQL 109
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 13/86 (15%)
Query: 31 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------MLPV-----DTSRNPRY 78
Q+ ++P + VV +VL C+ S P + W ++ L V D + N RY
Sbjct: 2 QVEQSPQSLVVRQGENSVLQCNYSVTPDNHLRWFKQDTGKGLVSLTVLVDQKDKTSNGRY 61
Query: 79 NL-LTSGAPGTYIKIKPNLFSPLSVY 103
+ L A + + I L + Y
Sbjct: 62 SATLDKDAKHSTLHITATLLDDTATY 87
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 17/77 (22%)
Query: 127 SHTTVLHCSASGNPPPKISWIREMLPVDTS--------RNPRYNLLTSGAPGALQITNSI 178
++T C A GNP P + W++ RN ++L+ + + +
Sbjct: 23 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI---------MESVV 73
Query: 179 EEDQGKYECVAENEVGT 195
D+G Y CV ENE G+
Sbjct: 74 PSDKGNYTCVVENEYGS 90
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 34.7 bits (78), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 17/77 (22%)
Query: 127 SHTTVLHCSASGNPPPKISWIREMLPVDTS--------RNPRYNLLTSGAPGALQITNSI 178
++T C A GNP P + W++ RN ++L+ +
Sbjct: 27 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV---------V 77
Query: 179 EEDQGKYECVAENEVGT 195
D+G Y CV ENE G+
Sbjct: 78 PSDKGNYTCVVENEYGS 94
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%)
Query: 132 LHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAEN 191
+ C P ISW R+ + +S + + + L++T E D G Y C A N
Sbjct: 38 ITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVN 97
Query: 192 EVGTE 196
+G E
Sbjct: 98 RIGQE 102
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 110 PGFP-QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGA 168
PG P +I PS ++ + C+ +G P P+++W + + R+++ +
Sbjct: 2 PGIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDD 61
Query: 169 PGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
L I + ++D G Y NE G++ S + ++++
Sbjct: 62 LTTLIIMDVQKQDGGLYTLSLGNEFGSD-SATVNIHIR 98
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 34.3 bits (77), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 17/77 (22%)
Query: 127 SHTTVLHCSASGNPPPKISWIREMLPVDTS--------RNPRYNLLTSGAPGALQITNSI 178
++T C A GNP P + W++ RN ++L+ +
Sbjct: 28 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV---------V 78
Query: 179 EEDQGKYECVAENEVGT 195
D+G Y CV ENE G+
Sbjct: 79 PSDKGNYTCVVENEYGS 95
>pdb|2EDH|A Chain A, Solution Structure Of The Pdz Domain (3614- 3713 ) From
Human Obscurin
Length = 113
Score = 34.3 bits (77), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 11/94 (11%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRN-PRYNLLTSGAPGAL 172
+ TE + T VL C S P + W + +T R+ R++L GA L
Sbjct: 21 KFTEGLRNEEATEGATAVLRCELSKMAP--VEWWK---GHETLRDGDRHSLRQDGARCEL 75
Query: 173 QITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
QI + ED G+Y C+ E S ML V+
Sbjct: 76 QIRGLVAEDAGEYLCMCGKE-----RTSAMLTVR 104
>pdb|1BBJ|L Chain L, Crystal Structure Of A Chimeric Fab' Fragment Of An
Antibody Binding Tumour Cells
pdb|1BBJ|A Chain A, Crystal Structure Of A Chimeric Fab' Fragment Of An
Antibody Binding Tumour Cells
Length = 211
Score = 34.3 bits (77), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 19/111 (17%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE------MLPVDTSRN------PRY 161
Q+T++P++ V + T + C AS N ++W ++ L V + N R+
Sbjct: 3 QMTQSPASLSVSVGETVTITCRASENIYSNLAWYQQKQGKSPQLLVYAATNLADGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
+ SG +L+I + ED G Y C ++ GT Y+ + GT+++I
Sbjct: 63 SGSGSGTQYSLKINSLQSEDFGSYYC--QHFWGTPYT-----FGGGTRLEI 106
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 31 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE 66
Q+T++P++ V + T + C AS N ++W ++
Sbjct: 3 QMTQSPASLSVSVGETVTITCRASENIYSNLAWYQQ 38
>pdb|2YUZ|A Chain A, Solution Structure Of 4th Immunoglobulin Domain Of Slow
Type Myosin-Binding Protein C
Length = 100
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 120 STKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIE 179
+ + V + L C S N P K W + LPV S R ++ G L I N++
Sbjct: 15 TDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQES--DRLKVVQKGRIHKLVIANALT 70
Query: 180 EDQGKY 185
ED+G Y
Sbjct: 71 EDEGDY 76
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/94 (20%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGAL 172
P+I PS ++ + C+ +G P P+++W + + R+++ + L
Sbjct: 8 PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTL 67
Query: 173 QITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
I + ++D G Y NE G++ S + ++++
Sbjct: 68 IIMDVQKQDGGLYTLSLGNEFGSD-SATVNIHIR 100
>pdb|3O8X|C Chain C, Recognition Of Glycolipid Antigen By Inkt Cell Tcr
pdb|3O9W|C Chain C, Recognition Of A Glycolipid Antigen By The Inkt Cell Tcr
pdb|3QUX|C Chain C, Structure Of The Mouse Cd1d-Alpha-C-Galcer-Inkt Tcr
Complex
pdb|3QUY|C Chain C, Structure Of The Mouse Cd1d-Bnnh-Gsl-1'-Inkt Tcr Complex
pdb|3QUZ|C Chain C, Structure Of The Mouse Cd1d-Nu-Alpha-Galcer-Inkt Tcr
Complex
pdb|3RZC|C Chain C, Structure Of The Self-Antigen Igb3 Bound To Mouse Cd1d And
In Complex With The Inkt Tcr
pdb|3TA3|C Chain C, Structure Of The Mouse Cd1d-Glc-Dag-S2-Inkt Tcr Complex
pdb|3TVM|C Chain C, Structure Of The Mouse Cd1d-Smc124-Inkt Tcr Complex
pdb|3TVM|G Chain G, Structure Of The Mouse Cd1d-Smc124-Inkt Tcr Complex
pdb|3RTQ|C Chain C, Structure Of The Mouse Cd1d-Hs44-Inkt Tcr Complex
Length = 209
Score = 33.9 bits (76), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 19/112 (16%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------MLPV-----DTSRNPRY 161
Q+ ++P + VV VL C+ S P + W ++ L V D + N RY
Sbjct: 4 QVEQSPQSLVVRQGENCVLQCNYSVTPDNHLRWFKQDTGKGLVSLTVLVDQKDKTSNGRY 63
Query: 162 N--LLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV-KGTQV 210
+ L L IT ++ +D Y CV VG S L+ GTQ+
Sbjct: 64 SATLDKDAKHSTLHITATLLDDTATYICV----VGDRGSALGRLHFGAGTQL 111
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 33.5 bits (75), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 35/94 (37%), Gaps = 4/94 (4%)
Query: 98 SPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSR 157
P+ S D+ P P P V L C G PPP + W + + S
Sbjct: 1 GPMKASSGDQGSP--PCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASE 58
Query: 158 NPRYNLLTSGAPGALQITNSIEEDQGKYECVAEN 191
R + GA L +T ++ D G Y C A N
Sbjct: 59 --RLSFPADGAEHGLLLTAALPTDAGVYVCRARN 90
>pdb|3CXD|L Chain L, Crystal Structure Of Anti-Osteopontin Antibody 23c3 In
Complex With Its Epitope Peptide
pdb|3DSF|L Chain L, Crystal Structure Of Anti-Osteopontin Antibody 23c3 In
Complex With W43a Mutated Epitope Peptide
Length = 213
Score = 33.5 bits (75), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 112 FPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE------MLPVDTSRN------P 159
+ Q+T++P++ V + T + C AS N ++W ++ L V + N
Sbjct: 1 YIQMTQSPASLSVSVGETVTITCRASENIYSFLAWYQQKQGKSPQLLVYAATNLADGVPS 60
Query: 160 RYNLLTSGAPGALQITNSIEEDQGKYEC 187
R++ SG +L+I + ED G Y C
Sbjct: 61 RFSGSGSGTQFSLKINSLQSEDFGTYYC 88
>pdb|4AEH|L Chain L, Crystal Structure Of The Anti-Aahi Fab9c2 Antibody
Length = 214
Score = 33.5 bits (75), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE------MLPVDTSRN------PRY 161
Q+T++P++ V + T + C AS N ++W ++ L V + N R+
Sbjct: 3 QMTQSPASLSVSVGETVTITCRASENIYRNLAWYQQKQGKSPQLLVYAATNLAAGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYEC 187
+ SG +L+I + ED G Y C
Sbjct: 63 SGSGSGTQYSLKINSLQSEDFGSYYC 88
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 31 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE 66
Q+T++P++ V + T + C AS N ++W ++
Sbjct: 3 QMTQSPASLSVSVGETVTITCRASENIYRNLAWYQQ 38
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 33.5 bits (75), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 20/79 (25%)
Query: 131 VLHCSASGNPPPKISWI----------REMLPVDTSRNPRYNLLTSGAP-GALQITNSIE 179
+L C A+G P P I W +LPVD L +SG P G L + +SI+
Sbjct: 400 MLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQ-----TLNSSGPPFGKLVVQSSID 454
Query: 180 ----EDQGKYECVAENEVG 194
+ G EC A N+VG
Sbjct: 455 SSAFKHNGTVECKAYNDVG 473
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 20/79 (25%)
Query: 131 VLHCSASGNPPPKISWI----------REMLPVDTSRNPRYNLLTSGAP-GALQITNSIE 179
+L C A+G P P I W +LPVD L +SG P G L + +SI+
Sbjct: 425 MLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQ-----TLNSSGPPFGKLVVQSSID 479
Query: 180 ----EDQGKYECVAENEVG 194
+ G EC A N+VG
Sbjct: 480 SSAFKHNGTVECKAYNDVG 498
>pdb|1WWC|A Chain A, Nt3 Binding Domain Of Human Trkc Receptor
Length = 118
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 133 HC---SASGNPPPKISWIREMLPVDTSRNPRYNLLTSG--APGALQITNSIEEDQGKYEC 187
HC GNPPP + W+ P+ S+ G + G L + G Y
Sbjct: 23 HCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTL 82
Query: 188 VAENEVGT 195
+A+N +GT
Sbjct: 83 IAKNPLGT 90
>pdb|1DVF|C Chain C, Idiotopic Antibody D1.3 Fv Fragment-Antiidiotopic Antibody
E5.2 Fv Fragment Complex
Length = 107
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------MLPVDTSRN-----PRY 161
Q+T++PS+ + + C AS + ++W ++ +L TSR R+
Sbjct: 3 QLTQSPSSLSASLGDRVTISCRASQDISNYLNWYQQKPDGTVKLLIYYTSRLHSGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
+ SG +L I+N +ED Y C N + + T L +K
Sbjct: 63 SGSGSGTDYSLTISNLEQEDIATYFCQQGNTLPWTFGGGTKLEIK 107
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 132 LHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAEN 191
L C G PPP + W + + S R + GA L +T ++ D G Y C A N
Sbjct: 34 LKCVVLGEPPPVVVWEKGGQQLAASE--RLSFPADGAEHGLLLTAALPTDAGVYVCRARN 91
>pdb|3QPQ|L Chain L, Crystal Structure Of Anti-Tlr3 Antibody C1068 Fab
pdb|3QPQ|E Chain E, Crystal Structure Of Anti-Tlr3 Antibody C1068 Fab
pdb|3QPQ|C Chain C, Crystal Structure Of Anti-Tlr3 Antibody C1068 Fab
pdb|3QPQ|I Chain I, Crystal Structure Of Anti-Tlr3 Antibody C1068 Fab
pdb|3ULU|E Chain E, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|E Chain E, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 215
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE------MLPVDTSRN------PRY 161
Q+T++P++ + T + C ASGN ++W ++ L V ++ R+
Sbjct: 3 QMTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYNAKTLADGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYEC 187
+ SG +L+I + ED G Y C
Sbjct: 63 SGSESGTQYSLKINSLQPEDFGSYYC 88
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 31 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE 66
Q+T++P++ + T + C ASGN ++W ++
Sbjct: 3 QMTQSPASLSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 132 LHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAEN 191
L C G PPP + W + + S R + GA L +T ++ D G Y C A N
Sbjct: 34 LKCVVLGEPPPVVVWEKGGQQLAASE--RLSFPADGAEHGLLLTAALPTDAGVYVCRARN 91
>pdb|2VC2|L Chain L, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece Bound To
Antagonist L-739758
pdb|2VDK|L Chain L, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece
pdb|2VDL|L Chain L, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece
pdb|2VDM|L Chain L, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece Bound To
Antagonist Tirofiban
pdb|2VDN|L Chain L, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece Bound To
Antagonist Eptifibatide
pdb|2VDO|L Chain L, Integrin Alphaiibbeta3 Headpiece Bound To Fibrinogen Gamma
Chain Peptide, Hhlggakqagdv
pdb|2VDP|L Chain L, Integrin Alphaiibbeta3 Headpiece Bound To Fibrinogen Gamma
Chain Peptide,Lggakqagdv
pdb|2VDQ|L Chain L, Integrin Alphaiibbeta3 Headpiece Bound To A Chimeric
Fibrinogen Gamma Chain Peptide, Hhlggakqrgdv
pdb|2VDR|L Chain L, Integrin Alphaiibbeta3 Headpiece Bound To A Chimeric
Fibrinogen Gamma Chain Peptide, Lggakqrgdv
pdb|3NID|F Chain F, The Closed Headpiece Of Integrin Alphaiib Beta3 And Its
Complex With An Alpahiib Beta3 -Specific Antagonist That
Does Not Induce Opening
pdb|3NID|L Chain L, The Closed Headpiece Of Integrin Alphaiib Beta3 And Its
Complex With An Alpahiib Beta3 -Specific Antagonist That
Does Not Induce Opening
pdb|3NIF|F Chain F, The Closed Headpiece Of Integrin Iib 3 And Its Complex
With An Iib 3 - Specific Antagonist That Does Not Induce
Opening
pdb|3NIF|L Chain L, The Closed Headpiece Of Integrin Iib 3 And Its Complex
With An Iib 3 - Specific Antagonist That Does Not Induce
Opening
pdb|3NIG|F Chain F, The Closed Headpiece Of Integrin Iib 3 And Its Complex
With An Iib 3 - Specific Antagonist That Does Not Induce
Opening
pdb|3NIG|L Chain L, The Closed Headpiece Of Integrin Iib 3 And Its Complex
With An Iib 3 - Specific Antagonist That Does Not Induce
Opening
pdb|3T3M|F Chain F, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
pdb|3T3M|L Chain L, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
pdb|3T3P|F Chain F, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
pdb|3T3P|L Chain L, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
Length = 214
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 12/104 (11%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE------MLPVDTSRN------PRYN 162
+T++PS+ V + T + C AS I W+++ M + N R++
Sbjct: 4 MTQSPSSMSVSLGDTVSITCHASQGISSNIGWLQQKPGKSFMGLIYYGTNLVDGVPSRFS 63
Query: 163 LLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
SGA +L I++ ED Y CV ++ + T L +K
Sbjct: 64 GSGSGADYSLTISSLDSEDFADYYCVQYAQLPYTFGGGTKLEIK 107
>pdb|2DTG|D Chain D, Insulin Receptor (Ir) Ectodomain In Complex With Fab's
pdb|3LOH|D Chain D, Structure Of The Insulin Receptor Ectodomain, Including Ct
P
pdb|3W14|D Chain D, Insulin Receptor Ectodomain Construct Comprising Domains
L1,cr,l2, Fniii-1 And Alphact Peptide In Complex With
Bovine Insulin And Fab 83-14
pdb|3W14|Q Chain Q, Insulin Receptor Ectodomain Construct Comprising Domains
L1,cr,l2, Fniii-1 And Alphact Peptide In Complex With
Bovine Insulin And Fab 83-14
Length = 214
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 19/111 (17%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISW--------IREMLPVDTSRNP----RY 161
Q+T++PS+ + L C AS + + W I+ ++ +S +P R+
Sbjct: 3 QMTQSPSSLSASLGERVSLTCRASQDIGGNLYWLQQGPDGTIKRLIYATSSLDPGVPKRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
+ SG+ +L I++ ED Y C+ +YS S + GT+++I
Sbjct: 63 SGSRSGSDYSLTISSLKSEDFVDYYCL-------QYSSSPWTFGGGTKLEI 106
>pdb|1WEJ|L Chain L, Igg1 Fab Fragment (Of E8 Antibody) Complexed With Horse
Cytochrome C At 1.8 A Resolution
pdb|1QBL|L Chain L, Fab E8 (Fabe8a) X-Ray Structure At 2.26 Angstrom
Resolution
pdb|1QBM|L Chain L, Fab E8b Antibody, X-Ray Structure At 2.37 Angstroms
Resolution
Length = 214
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE------MLPVDTSRN------PRY 161
Q+T++P++ + T + C ASGN ++W ++ L V ++ R+
Sbjct: 3 QMTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYNAKTLADGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYEC 187
+ SG +L+I + ED G Y C
Sbjct: 63 SGSGSGTQYSLKINSLQPEDFGSYYC 88
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 31 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE 66
Q+T++P++ + T + C ASGN ++W ++
Sbjct: 3 QMTQSPASLSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|1JGL|L Chain L, Crystal Structure Of Immunoglobulin Fab Fragment Complexed
With 17-Beta-Estradiol
pdb|1JHK|L Chain L, Crystal Structure Of The Anti-Estradiol Antibody 57-2
Length = 214
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE------MLPVDTSRN------PRY 161
Q+T++P++ + T + C ASGN ++W ++ L V ++ R+
Sbjct: 3 QMTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYNAKTLADGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYEC 187
+ SG +L+I + ED G Y C
Sbjct: 63 SGSGSGTQYSLKINSLQPEDFGTYYC 88
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 31 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE 66
Q+T++P++ + T + C ASGN ++W ++
Sbjct: 3 QMTQSPASLSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 68/180 (37%), Gaps = 40/180 (22%)
Query: 49 LHCSASGNPPPKISWIREMLPVDTSRNPRYN---------------------LLTSGAPG 87
L C+ SG P++ W + DT+R YN +T G
Sbjct: 24 LSCAYSGFSSPRVEW--KFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTG 81
Query: 88 TYIKI----KPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCS-ASGNPPP 142
TY + N + + V +PP P + PS+ I + VL CS G+PP
Sbjct: 82 TYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTV-NIPSSAT--IGNRAVLTCSEQDGSPPS 138
Query: 143 KISWIREMLPVDTSRNPRYNLLTSGAP-------GALQITNSIEEDQGKYECVAENEVGT 195
+ +W ++ + + T NP+ S + G L D G+Y C A N GT
Sbjct: 139 EYTWFKDGIVMPT--NPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGT 196
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 10/74 (13%)
Query: 132 LHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGA--------PGALQITNSIEEDQG 183
L C+ SG P++ W + DT+R YN + + P + + ED G
Sbjct: 24 LSCAYSGFSSPRVEW--KFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTG 81
Query: 184 KYECVAENEVGTEY 197
Y C+ E G Y
Sbjct: 82 TYTCMVSEEGGNSY 95
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 62/162 (38%), Gaps = 12/162 (7%)
Query: 49 LHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTYIKIKPNLFSPLSVYSADKI 108
L C A+ NPP + SW +++ +T G+Y N + L+ + I
Sbjct: 223 LSCHAASNPPAQYSWFVNGTFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTI 282
Query: 109 ----PPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR-EMLPVDTSRNPRYNL 163
P P IT S V E L C + W+ + LPV PR L
Sbjct: 283 TVYAEPPKPFITSNNSNPV-EDEDAVALTCEPEIQNTTYLWWVNNQSLPVS----PRLQL 337
Query: 164 LTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205
S L + + D G YEC +NE+ ++S +L V
Sbjct: 338 --SNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNV 377
>pdb|1D5B|A Chain A, Unliganded Mature Oxy-Cope Catalytic Antibody
pdb|1D5B|L Chain L, Unliganded Mature Oxy-Cope Catalytic Antibody
Length = 211
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 12/107 (11%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------MLPVDTSRN-----PRY 161
++T++PS+ + + C AS + ++W ++ L T+R R+
Sbjct: 3 KMTQSPSSMYASLGERVTITCKASQDINSYLNWFQQKPGKSPKTLIYRTNRLVDGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGT 208
+ SG +L I++ ED G Y C+ +E + T L +K T
Sbjct: 63 SGSGSGQDYSLTISSLEYEDMGIYYCLQYDEFPYTFGSGTKLEIKRT 109
>pdb|3D69|L Chain L, Crystal Structure Of The Fab Fragment Of An Anti-Factor Ix
Antibody 10c12
pdb|3D69|A Chain A, Crystal Structure Of The Fab Fragment Of An Anti-Factor Ix
Antibody 10c12
Length = 216
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 30/116 (25%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSAS----GNPPPKISWIRE-------MLPVDTSRNP-- 159
P ++ AP KV + CS S GN +SW ++ ++ D S+ P
Sbjct: 8 PSVSAAPGQKVT-------ISCSGSTSNIGNN--YVSWYQQHPGKAPKLMIYDVSKRPSG 58
Query: 160 ---RYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
R++ SG +L I+ ED+ Y C A ++ +E+ L+ GT++ +
Sbjct: 59 VPDRFSGSKSGNSASLDISGLQSEDEADYYCAAWDDSLSEF-----LFGTGTKLTV 109
>pdb|1NL0|L Chain L, Crystal Structure Of Human Factor Ix Gla Domain In Complex
Of An Inhibitory Antibody, 10c12
Length = 213
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 30/116 (25%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSAS----GNPPPKISWIRE-------MLPVDTSRNP-- 159
P ++ AP KV + CS S GN +SW ++ ++ D S+ P
Sbjct: 8 PSVSAAPGQKVT-------ISCSGSTSNIGNN--YVSWYQQHPGKAPKLMIYDVSKRPSG 58
Query: 160 ---RYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
R++ SG +L I+ ED+ Y C A ++ +E+ L+ GT++ +
Sbjct: 59 VPDRFSGSKSGNSASLDISGLQSEDEADYYCAAWDDSLSEF-----LFGTGTKLTV 109
>pdb|6FAB|L Chain L, Three-Dimensional Structure Of Murine Anti-P-
Azophenylarsonate Fab 36-71. 1. X-Ray Crystallography,
Site-Directed Mutagenesis, And Modeling Of The Complex
With Hapten
Length = 214
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------MLPVDTSRNP-----RY 161
Q+T+ PS+ + + C AS + ++W ++ +L TSR+ R+
Sbjct: 3 QMTQIPSSLSASLGDRVSISCRASQDINNFLNWYQQKPDGTIKLLIYFTSRSQSGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
+ SG +L I+N +ED Y C N + + T L +K
Sbjct: 63 SGSGSGTDYSLTISNLEQEDIATYFCQQGNALPRTFGGGTKLEIK 107
>pdb|3G5V|A Chain A, Antibodies Specifically Targeting A Locally Misfolded
Region Of Tumor Associated Egfr
Length = 212
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREM------------LPVDTSRNPRYN 162
+T++PS+ V + T + C +S + I W+++ +D R++
Sbjct: 4 MTQSPSSMSVSLGDTVSITCHSSQDINSNIGWLQQKPGKSFKGLIYHGTNLDDEVPSRFS 63
Query: 163 LLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
SGA +L I++ ED Y CV + + T L +K
Sbjct: 64 GSGSGADYSLTISSLESEDFADYYCVQYAQFPWTFGGGTKLEIK 107
>pdb|2GFB|A Chain A, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
pdb|2GFB|C Chain C, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
pdb|2GFB|E Chain E, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
pdb|2GFB|G Chain G, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
pdb|2GFB|I Chain I, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
pdb|2GFB|K Chain K, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
pdb|2GFB|M Chain M, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
pdb|2GFB|O Chain O, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
Length = 214
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 19/111 (17%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE------------MLPVDTSRNPRY 161
Q+T++PS+ + L C AS +SW+++ +D+ R+
Sbjct: 3 QMTQSPSSLSASLGERVSLTCRASQEISGYLSWLQQKPDGTIKRLIYAASTLDSGVPKRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
+ SG+ +L I++ ED Y C+ +Y+ S + GT+++I
Sbjct: 63 SGSRSGSDYSLTISSLESEDFADYYCL-------QYASSPYTFGGGTKLEI 106
>pdb|1JFQ|L Chain L, Antigen-Binding Fragment Of The Murine Anti-Phenylarsonate
Antibody 36-71, "fab 36-71"
Length = 215
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------MLPVDTSRNP-----RY 161
Q+T+ PS+ + + C AS + ++W ++ +L TSR+ R+
Sbjct: 3 QMTQIPSSLSASLGDRVSISCRASQDINNFLNWYQQKPDGTIKLLIYFTSRSQSGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
+ SG +L I+N +ED Y C N + + T L +K
Sbjct: 63 SGSGSGTDYSLTISNLEQEDIATYFCQQGNALPRTFGGGTKLEIK 107
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 7/75 (9%)
Query: 123 VVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQ 182
VV+ + C +G P P + W P+ R + L I D+
Sbjct: 320 VVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGR-------ATVTDSGLVIKGVKNGDK 372
Query: 183 GKYECVAENEVGTEY 197
G Y C A NE G +Y
Sbjct: 373 GYYGCRATNEHGDKY 387
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 112 FPQITEAPSTKVVEISHTTVLHCSASGNPPP-KISWIREMLPVDTSRNPRYNLLTSGAPG 170
+P + + P+ + ++ TVL C GN K SW ++ + +N G
Sbjct: 6 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQE---HNAALRKDEG 62
Query: 171 ALQITNSIEEDQGKYECVAENEVG 194
+L D+G Y+C AE G
Sbjct: 63 SLVFLRPQASDEGHYQCFAETPAG 86
>pdb|1AXS|L Chain L, Mature Oxy-Cope Catalytic Antibody With Hapten
pdb|1AXS|A Chain A, Mature Oxy-Cope Catalytic Antibody With Hapten
Length = 211
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 12/106 (11%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------MLPVDTSRN-----PRYN 162
+T++PS+ + + C AS + ++W ++ L T+R R++
Sbjct: 4 LTQSPSSMYASLGERVTITCKASQDINSYLNWFQQKPGKSPKTLIYRTNRLVDGVPSRFS 63
Query: 163 LLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGT 208
SG +L I++ ED G Y C+ +E + T L +K T
Sbjct: 64 GSGSGQDYSLTISSLEYEDMGIYYCLQYDEFPYTFGSGTKLEIKRT 109
>pdb|3G5X|A Chain A, Antibodies Specifically Targeting A Locally Misfolded
Region Of Tumor Associated Egfr
pdb|3G5X|C Chain C, Antibodies Specifically Targeting A Locally Misfolded
Region Of Tumor Associated Egfr
Length = 214
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREM------------LPVDTSRNPRYN 162
+T++PS+ V + T + C +S + I W+++ +D R++
Sbjct: 4 MTQSPSSMSVSLGDTVSITCHSSQDINSNIGWLQQKPGKSFKGLIYHGTNLDDEVPSRFS 63
Query: 163 LLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
SGA +L I++ ED Y CV + + T L +K
Sbjct: 64 GSGSGADYSLTISSLESEDFADYYCVQYAQFPWTFGGGTKLEIK 107
>pdb|1KNO|A Chain A, Crystal Structure Of The Complex Of A Catalytic Antibody
Fab With A Transition State Analog: Structural
Similarities In Esterase-Like Abzymes
pdb|1KNO|C Chain C, Crystal Structure Of The Complex Of A Catalytic Antibody
Fab With A Transition State Analog: Structural
Similarities In Esterase-Like Abzymes
pdb|1KNO|E Chain E, Crystal Structure Of The Complex Of A Catalytic Antibody
Fab With A Transition State Analog: Structural
Similarities In Esterase-Like Abzymes
Length = 214
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 19/111 (17%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE------------MLPVDTSRNPRY 161
Q+T++PS+ + L C AS +SW+++ +D+ R+
Sbjct: 3 QMTQSPSSLSASLGERVSLTCRASQEISGYLSWLQQKPDGTIKRLIYAASTLDSGVPKRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
+ SG+ +L I++ ED Y C+ +Y+ S + GT+++I
Sbjct: 63 SGSRSGSDYSLTISSLESEDFADYYCL-------QYASSPYTFGGGTKLEI 106
>pdb|1KB5|L Chain L, Murine T-Cell Receptor Variable DomainFAB COMPLEX
Length = 214
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 19/111 (17%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE------MLPVDTSRN------PRY 161
Q+T++P++ + T + C AS N ++W ++ L V ++ R+
Sbjct: 3 QMTQSPASLSASVGETVTITCRASKNIYSYLAWYQQKQGKSPQLLVYNAKTLGEGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
+ SG +L+I + ED G Y C ++ GT Y+ + GT+++I
Sbjct: 63 SGSGSGTQFSLKINSLQPEDFGSYYC--QHHYGTPYT-----FGGGTKLEI 106
>pdb|1D5I|L Chain L, Unliganded Germline Precursor Of An Oxy-Cope Catalytic
Antibody
pdb|1D6V|L Chain L, Conformation Effects In Biological Catalysis Introduced By
Oxy-Cope Antibody Maturation
Length = 211
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 12/107 (11%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------MLPVDTSRN-----PRY 161
++T++PS+ + + C AS + +SW ++ L +R R+
Sbjct: 3 KMTQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGT 208
+ SG +L I++ ED G Y C+ +E + T L +K T
Sbjct: 63 SGSGSGQDYSLTISSLEYEDMGIYYCLQYDEFPYTFGSGTKLEIKRT 109
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 57/149 (38%), Gaps = 31/149 (20%)
Query: 63 WIREMLPVDTSRNPRYNLLTSGAPGTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTK 122
W++E +P +T+ R + +G G YI S + Y+ P I E P+
Sbjct: 274 WLKETVPSNTTCCARCHA-PAGLKGRYIGELDQ--SHFTCYA--------PVIVEPPTDL 322
Query: 123 VVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGA---------PGALQ 173
V L C +G ++W+ P L+T G+ G L
Sbjct: 323 NVTEGMAAELKCR-TGTSMTSVNWL----------TPNGTLMTHGSYRVRISVLHDGTLN 371
Query: 174 ITNSIEEDQGKYECVAENEVGTEYSPSTM 202
TN +D G+Y C+ N G + +T+
Sbjct: 372 FTNVTVQDTGQYTCMVTNSAGNTTASATL 400
>pdb|3IY6|A Chain A, Variable Domains Of The Computer Generated Model (Wam) Of
Fab E Fitted Into The Cryoem Reconstruction Of The
Virus- Fab E Complex
Length = 107
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 12/104 (11%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE--------MLPVDTSRN----PRYN 162
+T+ P++ + + ++C AS N + W ++ ++ ++RN R+
Sbjct: 2 MTQIPASMSISVGDRVTMNCKASQNVDSNVDWYQQKTGQSPNLLIYKASNRNTGVPDRFT 61
Query: 163 LLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
SG I+N ED Y C+ + T L +K
Sbjct: 62 GSGSGTDFTFTISNMQAEDLAVYYCMQSTSYPLTFGSGTKLEIK 105
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 134 CSASGNPPPKISWIREMLPVDTSRNPRYNLLTS-GAPGALQITNSIEEDQGKYECVAENE 192
C +GNP PKI W ++ + + ++ Y + +L T S +D G Y +A N
Sbjct: 30 CRVAGNPKPKIYWFKDGKQI-SPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANP 88
Query: 193 VG 194
G
Sbjct: 89 QG 90
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 134 CSASGNPPPKISWIREMLPVDTSRNPRYNLLTS-GAPGALQITNSIEEDQGKYECVAENE 192
C +GNP PKI W ++ + + ++ Y + +L T S +D G Y +A N
Sbjct: 29 CRVAGNPKPKIYWFKDGKQI-SPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANP 87
Query: 193 VG 194
G
Sbjct: 88 QG 89
>pdb|1F6L|L Chain L, Variable Light Chain Dimer Of Anti-Ferritin Antibody
Length = 114
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 19/111 (17%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE------MLPVDTSRN------PRY 161
Q+T++P++ + T + C AS N ++W ++ L V ++ R+
Sbjct: 3 QMTQSPASLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQLLVYNAKTLAEGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
+ SG +L+I + ED G Y C ++ GT ++ + GT+++I
Sbjct: 63 SGSGSGTQFSLKINSLQPEDFGSYYC--QHHYGTPFT-----FGSGTKLEI 106
>pdb|1C12|A Chain A, Insight In Odorant Perception: The Crystal Structure And
Binding Characteristics Of Antibody Fragments Directed
Against The Musk Odorant Traseolide
Length = 214
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 12/105 (11%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREM------------LPVDTSRNPRY 161
++T++PS+ V + T + C AS I W+++ ++ R+
Sbjct: 3 ELTQSPSSMSVSLGDTVSITCHASQGISSNIGWLQQKPGKSFKGLIYHGTNLEDGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
+ SGA +L I++ ED Y CV + + T L +K
Sbjct: 63 SGSGSGADYSLTISSLESEDFADYYCVQYVQFPFTFGSGTKLEIK 107
>pdb|3EOY|G Chain G, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|H Chain H, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|I Chain I, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|J Chain J, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|K Chain K, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|L Chain L, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
Length = 104
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 10/74 (13%)
Query: 132 LHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGA--------PGALQITNSIEEDQG 183
L C+ SG P++ W + DT+R YN + + P + + ED G
Sbjct: 23 LSCAYSGFSSPRVEW--KFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTG 80
Query: 184 KYECVAENEVGTEY 197
Y C+ E G Y
Sbjct: 81 TYTCMVSEEGGNSY 94
>pdb|2EDW|A Chain A, Solution Structure Of The I-Set Domain (3537-3630) Of
Human Obscurin
Length = 107
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 11/79 (13%)
Query: 129 TTVLHCSASGNPPPKISWIREMLPVDTSRN-PRYNLLTSGAPGALQITNSIEEDQGKYEC 187
T VL C + P + W + +T R+ RY+L G LQI D G+Y C
Sbjct: 25 TAVLQCELNSAAP--VEWRK---GSETLRDGDRYSLRQDGTKCELQIRGLAMADTGEYSC 79
Query: 188 VAENEVGTEYSPSTMLYVK 206
V E S ML V+
Sbjct: 80 VCGQE-----RTSAMLTVR 93
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine-
Rich Repeat-Containing Protein 4
Length = 103
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 13/89 (14%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDT-----SRNPRYNLLTSG 167
P I +AP + L C P +S ++ +LP T SR+PR ++L G
Sbjct: 8 PFIMDAPRDLNISEGRMAELKCRT-----PPMSSVKWLLPNGTVLSHASRHPRISVLNDG 62
Query: 168 APGALQITNSIEEDQGKYECVAENEVGTE 196
L ++ + D G Y C+ N G
Sbjct: 63 T---LNFSHVLLSDTGVYTCMVTNVAGNS 88
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 67/181 (37%), Gaps = 40/181 (22%)
Query: 31 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTYI 90
Q+T + S + + + C+A G P I W NP+ + S +
Sbjct: 4 QVTISLSKVELSVGESKFFTCTAIGEPES-IDWY----------NPQGEKIIS--TQRVV 50
Query: 91 KIKPNLFSPLSVYSADKIPPGF--PQITEAP-----STKVVEISHTTVLH---------- 133
K + S L++Y+A+ G Q T+A +T V+EI
Sbjct: 51 VQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQ 110
Query: 134 -------CSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYE 186
C S +P P +SW+ V T + R+ +L + L I S D+G Y
Sbjct: 111 GEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKS---DEGIYR 167
Query: 187 C 187
C
Sbjct: 168 C 168
>pdb|2YK1|L Chain L, Structure Of Human Anti-Nicotine Fab Fragment In Complex
With Nicotine
Length = 216
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 160 RYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
R++ SG +L I+ ED+ Y C A ++ S S ++ GTQ+DI
Sbjct: 62 RFSGSKSGTSASLAISGLRSEDEADYYCAAWDD-----SLSAWVFGGGTQLDI 109
>pdb|2E7C|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 118
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 137 SGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENE 192
G P P++ W + P+DTS R ++ TS + + D G+YE + E
Sbjct: 49 QGKPRPQVVWTKGGAPLDTS---RVHVRTSDFDTVFFVRQAARSDSGEYELSVQIE 101
>pdb|2YKL|L Chain L, Structure Of Human Anti-Nicotine Fab Fragment In Complex
With
Nicotine-11-Yl-Methyl-(4-Ethylamino-4-Oxo)-Butanoate
Length = 216
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 160 RYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
R++ SG +L I+ ED+ Y C A ++ S S ++ GTQ+DI
Sbjct: 62 RFSGSKSGTSASLAISGLRSEDEADYYCAAWDD-----SLSAWVFGGGTQLDI 109
>pdb|2ESV|E Chain E, Structure Of The Hla-E-VmaprtlilKK50.4 TCR COMPLEX
Length = 240
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 21/110 (19%)
Query: 115 ITEAPSTKVVEISHTTVLHCS-ASGNPPPKISWIREML--------------PVDTSRNP 159
+T+ PS V+E T L C SG+ + W R ++ D S P
Sbjct: 2 VTQFPSHSVIEKGQTVTLRCDPISGHD--NLYWYRRVMGKEIKFLLHFVKESKQDESGMP 59
Query: 160 RYNLL---TSGAPGALQITNSIEEDQGKYECVAENEVGTEY-SPSTMLYV 205
L T G L++ + ED G Y C + + T+Y P T L V
Sbjct: 60 NNRFLAERTGGTYSTLKVQPAELEDSGVYFCASSQDRDTQYFGPGTRLTV 109
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 55/156 (35%), Gaps = 43/156 (27%)
Query: 32 ITEAPSTKVVEISHTTVLHCS-ASGNPPPKISWIREML--------------PVDTSRNP 76
+T+ PS V+E T L C SG+ + W R ++ D S P
Sbjct: 2 VTQFPSHSVIEKGQTVTLRCDPISGH--DNLYWYRRVMGKEIKFLLHFVKESKQDESGMP 59
Query: 77 RYNLLTSGAPGTY--IKIKPNLFSPLSVY----SADK----IPPG------------FPQ 114
L GTY +K++P VY S D+ PG FP
Sbjct: 60 NNRFLAERTGGTYSTLKVQPAELEDSGVYFCASSQDRDTQYFGPGTRLTVLEDLKNVFPP 119
Query: 115 ITEAPSTKVVEISHT--TVLHCSASGNPPP--KISW 146
EISHT L C A+G P ++SW
Sbjct: 120 EVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW 155
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 136 ASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGT 195
A+G P P W ++ + ++ +Y L L+I + D G Y C +N G+
Sbjct: 30 ATGEPRPTAIWTKDGKAI--TQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGS 87
Query: 196 EYSPSTMLYVK 206
S S L +K
Sbjct: 88 -VSSSCKLTIK 97
>pdb|3L5W|L Chain L, Crystal Structure Of The Complex Between Il-13 And C836
Fab
pdb|3L5W|A Chain A, Crystal Structure Of The Complex Between Il-13 And C836
Fab
pdb|3L7E|L Chain L, Crystal Structure Of Anti-Il-13 Antibody C836
pdb|3L7E|A Chain A, Crystal Structure Of Anti-Il-13 Antibody C836
Length = 214
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 14/108 (12%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRN-------------PR 160
QIT++PS T L+C AS + ++W +E P T++ R
Sbjct: 3 QITQSPSYLAASPGETITLNCRASKSISKYLAWYQEK-PGKTNKLLIYSGSTLQSGIPSR 61
Query: 161 YNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGT 208
++ SG L I++ ED Y C NE + T L +K T
Sbjct: 62 FSGSGSGTDFTLTISSLEPEDFAMYFCQQHNEYPYTFGGGTKLEIKRT 109
>pdb|2RHE|A Chain A, Structure Of A Novel Bence-Jones Protein (Rhe) Fragment At
1.6 Angstroms Resolution
Length = 114
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 127 SHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYE 186
S++ + + G P + + ++LP S R++ SG +L I+ ED+ Y
Sbjct: 31 SNSVIWYQQVPGKAPKLLIYYNDLLPSGVSD--RFSASKSGTSASLAISGLESEDEADYY 88
Query: 187 CVAENEVGTE--YSPSTMLYVKG 207
C A N+ E + T L V G
Sbjct: 89 CAAWNDSLDEPGFGGGTKLTVLG 111
>pdb|1AJ7|L Chain L, Immunoglobulin 48g7 Germline Fab Antibody Complexed With
Hapten 5-(Para-Nitrophenyl Phosphonate)-Pentanoic Acid.
Affinity Maturation Of An Esterolytic Antibody
Length = 214
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 19/111 (17%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE------------MLPVDTSRNPRY 161
Q+T++PS+ + L C AS +SW+++ +D+ R+
Sbjct: 3 QMTQSPSSLSASLGERVSLTCRASQEISGYLSWLQQKPDGTIKRLIYAASTLDSGVPKRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
+ SG+ +L I++ ED Y C+ +Y+ + GT+V+I
Sbjct: 63 SGSRSGSDYSLTISSLESEDFADYYCL-------QYASYPRTFGGGTKVEI 106
>pdb|1I8I|A Chain A, Crystal Structure Of Dsfv Mr1 In Complex With The Peptide
Antigen Of The Mutant Epidermal Growth Factor Receptor,
Egfrviii, At Room Temperature
pdb|1I8K|A Chain A, Crystal Structure Of Dsfv Mr1 In Complex With The Peptide
Antigen Of The Mutant Epidermal Growth Factor Receptor,
Egfrviii, At Liquid Nitrogen Temperature
Length = 107
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 12/105 (11%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE--------MLPVDTSRNP----RY 161
++T++P++ V + C S + ++W ++ ++ + P R+
Sbjct: 3 ELTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
+ +G I N++ ED G Y C+ V + T L +K
Sbjct: 63 SSSGTGTDFVFTIENTLSEDVGDYYCLQSFNVPLTFGCGTKLEIK 107
>pdb|1CIC|C Chain C, Idiotope-Anti-Idiotope Fab-Fab Complex; D1.3-E225
Length = 214
Score = 30.4 bits (67), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR-------EMLPVDTSRNP-----RY 161
Q+T++P++ + T + C ASGN ++W + ++L T+ R+
Sbjct: 3 QMTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYEC 187
+ SG +L+I + ED G Y C
Sbjct: 63 SGSGSGTQYSLKINSLQPEDFGSYYC 88
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 31 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE 66
Q+T++P++ + T + C ASGN ++W ++
Sbjct: 3 QMTQSPASLSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|1FDL|L Chain L, Crystallographic Refinement Of The Three-Dimensional
Structure Of The Fab D1.3-Lysozyme Complex At 2.5-
Angstroms Resolution
Length = 214
Score = 30.4 bits (67), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR-------EMLPVDTSRNP-----RY 161
Q+T++P++ + T + C ASGN ++W + ++L T+ R+
Sbjct: 3 QMTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYEC 187
+ SG +L+I + ED G Y C
Sbjct: 63 SGSGSGTQYSLKINSLQPEDFGSYYC 88
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 31 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE 66
Q+T++P++ + T + C ASGN ++W ++
Sbjct: 3 QMTQSPASLSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|B Chain B, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|C Chain C, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|D Chain D, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
Length = 91
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQ 173
QI P+++ + T VL C A G+P P W + LP LT
Sbjct: 5 QICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELP-----------LTHETKKLYM 53
Query: 174 ITNSIEEDQGKYECVAENEVGTEYS 198
+ E QG Y C N+ ++ S
Sbjct: 54 VPYVDLEHQGTYWCHVYNDRDSQDS 78
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 31 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRY 78
QI P+++ + T VL C A G+P P W + LP+ Y
Sbjct: 5 QICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLY 52
>pdb|2RCS|L Chain L, Immunoglobulin 48g7 Germline Fab-Affinity Maturation Of An
Esterolytic Antibody
Length = 214
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 19/111 (17%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE------------MLPVDTSRNPRY 161
Q+T++PS+ + L C AS +SW+++ +D+ R+
Sbjct: 3 QMTQSPSSLSASLGERVSLTCRASQEISGYLSWLQQKPDGTIKRLIYAASTLDSGVPKRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
+ SG+ +L I++ ED Y C+ +Y+ + GT+V+I
Sbjct: 63 SGSRSGSDYSLTISSLESEDFADYYCL-------QYASYPRTFGGGTKVEI 106
>pdb|1KIR|A Chain A, Fv Mutant Y(A 50)s (Vl Domain) Of Mouse Monoclonal
Antibody D1.3 Complexed With Hen Egg White Lysozyme
Length = 107
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR-------EMLPVDTSRNP-----RYN 162
+T++P++ + T + C ASGN ++W + ++L T+ R++
Sbjct: 4 LTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYSTTTLADGVPSRFS 63
Query: 163 LLTSGAPGALQITNSIEEDQGKYEC 187
SG +L+I + ED G Y C
Sbjct: 64 GSGSGTQYSLKINSLQPEDFGSYYC 88
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 32 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE 66
+T++P++ + T + C ASGN ++W ++
Sbjct: 4 LTQSPASLSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|2J88|L Chain L, Hyaluronidase In Complex With A Monoclonal Igg Fab
Fragment
Length = 213
Score = 30.4 bits (67), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 15/106 (14%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE------MLPVDTSRN------PRY 161
Q+T++P++ + T + C AS N ++W ++ L V ++ R+
Sbjct: 3 QMTQSPASLSASVGETVTITCRASENIYSYLTWYQQKQGKSPQLLVYNAKTLAEGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTE-YSPSTMLYVK 206
+ SG +L+I++ ED G Y C ++ GT + T L +K
Sbjct: 63 SGSGSGTQFSLKISSLQPEDFGNYYC--QHHYGTRTFGGGTRLEIK 106
>pdb|1WWB|X Chain X, Ligand Binding Domain Of Human Trkb Receptor
Length = 103
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 135 SASGNPPPKISWIREMLPVDTSRNPRYNLLTSGA---PGALQITNSIEEDQGKYECVAEN 191
+ GNP P + W ++ S+ + + G LQ+ N + G Y +A+N
Sbjct: 24 TVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKN 83
Query: 192 EVGTE 196
E G +
Sbjct: 84 EYGKD 88
>pdb|2XF2|A Chain A, Pvc-At
pdb|2XF2|E Chain E, Pvc-At
Length = 688
Score = 30.4 bits (67), Expect = 0.77, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 66 EMLPVDTSRNPRYNLLTSGAPGTYIKIKPNLFSP 99
E LP++ R P +N GA +I + PN +SP
Sbjct: 364 EQLPINRPRAPIHNNNRDGAGQMFIPLDPNAYSP 397
>pdb|2IUF|A Chain A, The Structures Of Penicillium Vitale Catalase: Resting
State, Oxidised State (Compound I) And Complex With
Aminotriazole
pdb|2IUF|E Chain E, The Structures Of Penicillium Vitale Catalase: Resting
State, Oxidised State (Compound I) And Complex With
Aminotriazole
Length = 688
Score = 30.4 bits (67), Expect = 0.81, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 66 EMLPVDTSRNPRYNLLTSGAPGTYIKIKPNLFSP 99
E LP++ R P +N GA +I + PN +SP
Sbjct: 364 EQLPINRPRAPIHNNNRDGAGQMFIPLDPNAYSP 397
>pdb|3G5Z|A Chain A, Antibodies Specifically Targeting A Locally Misfolded
Region Of Tumor Associated Egfr
Length = 213
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 19/110 (17%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE--------MLPVDTSRNP----RYN 162
+T++PS+ V + T + C AS + I W+++ ++ T+ + R++
Sbjct: 4 MTQSPSSMSVSLGDTVSITCHASQDIISNIGWLQQKPGKSFAGLIYHGTNLSDGVPSRFS 63
Query: 163 LLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
SGA +L I++ ED Y CV +Y+ + GT+++I
Sbjct: 64 GSGSGADYSLTISSLESEDFADYYCV-------QYAQFPWTFGGGTKLEI 106
>pdb|2VXT|L Chain L, Crystal Structure Of Human Il-18 Complexed To Murine
Reference Antibody 125-2h Fab
pdb|2VXU|L Chain L, Crystal Structure Of Murine Reference Antibody 125-2h Fab
Fragment
pdb|2VXU|M Chain M, Crystal Structure Of Murine Reference Antibody 125-2h Fab
Fragment
Length = 214
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 19/111 (17%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE------------MLPVDTSRNPRY 161
Q+T++PS+ + L C AS + K+ W+++ +D+ R+
Sbjct: 3 QMTQSPSSLSASLGERVSLTCRASQDIGSKLYWLQQEPDGTFKRLIYATSSLDSGVPKRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
+ SG+ +L I++ ED Y C+ +Y+ S + GT++ I
Sbjct: 63 SGSRSGSDYSLTISSLESEDFVDYYCL-------QYASSPYTFGGGTKLAI 106
>pdb|1HCF|X Chain X, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
pdb|1HCF|Y Chain Y, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
Length = 101
Score = 30.0 bits (66), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 135 SASGNPPPKISWIREMLPVDTSRNPRYNLLTSGA---PGALQITNSIEEDQGKYECVAEN 191
+ GNP P + W ++ S+ + + G LQ+ N + G Y +A+N
Sbjct: 24 TVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKN 83
Query: 192 EVGTE 196
E G +
Sbjct: 84 EYGKD 88
>pdb|2HH0|L Chain L, Structure Of An Anti-Prp Fab, P-Clone, In Complex With Its
Cognate Bovine Peptide Epitope
Length = 210
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 12/106 (11%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE------------MLPVDTSRNPRYN 162
+T+ PS+ + L C AS + ++WI++ +D+ R++
Sbjct: 3 MTQTPSSLSASLGERVSLTCRASQDIGNNLNWIQQKPDGTIKRLIYATSSLDSGVPKRFS 62
Query: 163 LLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGT 208
SG+ +L I++ ED Y C+ + + T L +K T
Sbjct: 63 GSRSGSDYSLTISSLESEDFADYYCLQHDTFPLTFGGGTKLEIKRT 108
>pdb|1G7J|A Chain A, Crystal Structure Of Hen Egg White Lysozyme (Hel)
Complexed With The Mutant Anti-Hel Monoclonal Antibody
D1.3 (Vlw92h)
Length = 107
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 12/104 (11%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR-------EMLPVDTSRNP-----RYN 162
+T++P++ + T + C ASGN ++W + ++L T+ R++
Sbjct: 4 LTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFS 63
Query: 163 LLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
SG +L+I + ED G Y C + + T L +K
Sbjct: 64 GSGSGTQYSLKINSLQPEDFGSYYCQHFHSTPRTFGGGTKLEIK 107
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 32 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE 66
+T++P++ + T + C ASGN ++W ++
Sbjct: 4 LTQSPASLSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|3EFD|L Chain L, The Crystal Structure Of The Cytoplasmic Domain Of Kcsa
Length = 211
Score = 30.0 bits (66), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 50/111 (45%), Gaps = 19/111 (17%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE------MLPVDTSRN------PRY 161
Q+T++PS+ + + C AS + ++W ++ L + ++ + R+
Sbjct: 3 QMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
+ SG L I++ ED Y C +YS S + + +GT+V+I
Sbjct: 63 SGSGSGTDFTLTISSLQPEDFATYYC-------QQYSYSLLTFGQGTKVEI 106
>pdb|1G7I|A Chain A, Crystal Structure Of Hen Egg White Lysozyme (Hel)
Complexed With The Mutant Anti-Hel Monoclonal Antibody
D1.3 (Vlw92f)
Length = 107
Score = 30.0 bits (66), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR-------EMLPVDTSRNP-----RYN 162
+T++P++ + T + C ASGN ++W + ++L T+ R++
Sbjct: 4 LTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFS 63
Query: 163 LLTSGAPGALQITNSIEEDQGKYEC 187
SG +L+I + ED G Y C
Sbjct: 64 GSGSGTQYSLKINSLQPEDFGSYYC 88
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 32 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE 66
+T++P++ + T + C ASGN ++W ++
Sbjct: 4 LTQSPASLSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|1DQL|L Chain L, Crystal Structure Of An Unliganded (Native) Fv From A
Human Igm Anti-Peptide Antibody
Length = 106
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 20/111 (18%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE--------MLPVDTSRN----PRY 161
Q+T++PS+ + + C AS + + W ++ ++ +S R+
Sbjct: 3 QMTQSPSSLSASVGDRVTITCRASQDIRNDLGWYQQKPGKAPKKLIYAASSLQSGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
+ SG L I++ ED Y C+ +N S + +GT+VDI
Sbjct: 63 SGSGSGTDFTLTISSLQPEDFATYYCLQQN--------SNWTFGQGTKVDI 105
>pdb|3RKD|L Chain L, Hepatitis E Virus E2s Domain (Genotype I) In Complex With
A Neutralizing Antibody
pdb|3RKD|C Chain C, Hepatitis E Virus E2s Domain (Genotype I) In Complex With
A Neutralizing Antibody
Length = 214
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE------MLPVDTSRN------PRY 161
Q+T++P++ V + T + C AS ++W ++ L V ++ N R+
Sbjct: 3 QMTQSPASLSVSVGETVTITCRASEIIYSNLAWYQQKQGKSPQLLVYSATNLAEGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYEC 187
+ SG +L+I + ED G Y C
Sbjct: 63 SGSGSGTQYSLKINSLQSEDFGSYYC 88
>pdb|1BZ7|A Chain A, Fab Fragment From Murine Ascites
Length = 206
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 12/107 (11%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------MLPVDTSRNP-----RY 161
Q+T+ S+ V + ++ C AS + ++W ++ +L TSR R+
Sbjct: 3 QMTQITSSLSVSLGDRVIISCRASQDIGNFLNWYQQKPDGSLKLLIYYTSRLQSGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGT 208
+ SG +L I+N EED + C + + T L +K T
Sbjct: 63 SGWGSGTDYSLTISNLEEEDIATFFCQQGKTLPYTFGGGTKLEIKRT 109
>pdb|3NCM|A Chain A, Neural Cell Adhesion Molecule, Module 2, Nmr, 20
Structures
Length = 92
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 112 FPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGA 171
+ AP+ + + V+ C + PP I W + V ++ R+ +L++
Sbjct: 1 YVMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN---NY 57
Query: 172 LQITNSIEEDQGKYEC 187
LQI + D+G Y C
Sbjct: 58 LQIRGIKKTDEGTYRC 73
>pdb|1G7M|A Chain A, Crystal Structure Of Hen Egg White Lysozyme (Hel)
Complexed With The Mutant Anti-Hel Monoclonal Antibody
D1.3 (Vlw92v)
Length = 107
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR-------EMLPVDTSRNP-----RYN 162
+T++P++ + T + C ASGN ++W + ++L T+ R++
Sbjct: 4 LTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFS 63
Query: 163 LLTSGAPGALQITNSIEEDQGKYEC 187
SG +L+I + ED G Y C
Sbjct: 64 GSGSGTQYSLKINSLQPEDFGSYYC 88
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 32 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE 66
+T++P++ + T + C ASGN ++W ++
Sbjct: 4 LTQSPASLSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|1G7L|A Chain A, Crystal Structure Of Hen Egg White Lysozyme (Hel)
Complexed With The Mutant Anti-Hel Monoclonal Antibody
D1.3 (Vlw92s)
Length = 107
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 12/104 (11%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR-------EMLPVDTSRNP-----RYN 162
+T++P++ + T + C ASGN ++W + ++L T+ R++
Sbjct: 4 LTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFS 63
Query: 163 LLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
SG +L+I + ED G Y C + + T L +K
Sbjct: 64 GSGSGTQYSLKINSLQPEDFGSYYCQHFSSTPRTFGGGTKLEIK 107
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 32 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE 66
+T++P++ + T + C ASGN ++W ++
Sbjct: 4 LTQSPASLSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|1C5B|L Chain L, Decarboxylase Catalytic Antibody 21d8 Unliganded Form
pdb|1C5C|L Chain L, Decarboxylase Catalytic Antibody 21d8-Hapten Complex
Length = 214
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 12/107 (11%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE------------MLPVDTSRNPRY 161
Q+T++PS+ + L C S +SW+++ +D+ R+
Sbjct: 3 QLTQSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGT 208
+ SG+ +L I++ ED Y C+ + T L +K T
Sbjct: 63 SGSRSGSDYSLTISSLESEDFADYYCLQYASFPRTFGGGTKLEIKRT 109
>pdb|1FBI|H Chain H, Crystal Structure Of A Cross-Reaction Complex Between Fab
F9.13.7 And Guinea-Fowl Lysozyme
pdb|1FBI|Q Chain Q, Crystal Structure Of A Cross-Reaction Complex Between Fab
F9.13.7 And Guinea-Fowl Lysozyme
Length = 221
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 25/104 (24%)
Query: 117 EAPSTKVVEISHTTVLHCSASG-------------NPPPKISWIREMLPVDTSRNPRYN- 162
+ P ++V+ + L C ASG P + WI E+ P D+ P YN
Sbjct: 5 QQPGAELVKPGASVKLSCKASGYTFTSYWMHWVKQGPGQGLEWIGEIDPSDS--YPNYNE 62
Query: 163 ---------LLTSGAPGALQITNSIEEDQGKYECVAENEVGTEY 197
+ S + +Q+++ ED Y C + GT Y
Sbjct: 63 KFKGKATLTVDKSSSTAYMQLSSLTSEDSAVYYCASLYYYGTSY 106
>pdb|1KIP|A Chain A, Fv Mutant Y(B 32)a (Vh Domain) Of Mouse Monoclonal
Antibody D1.3 Complexed With Hen Egg White Lysozyme
pdb|1KIQ|A Chain A, Fv Mutant Y(B 101)f (Vh Domain) Of Mouse Monoclonal
Antibody D1.3 Complexed With Hen Egg White Lysozyme
pdb|1A2Y|A Chain A, Hen Egg White Lysozyme, D18a Mutant, In Complex With Mouse
Monoclonal Antibody D1.3
pdb|1VFB|A Chain A, Bound Water Molecules And Conformational Stabilization
Help Mediate An Antigen-Antibody Association
Length = 107
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR-------EMLPVDTSRNP-----RYN 162
+T++P++ + T + C ASGN ++W + ++L T+ R++
Sbjct: 4 LTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFS 63
Query: 163 LLTSGAPGALQITNSIEEDQGKYEC 187
SG +L+I + ED G Y C
Sbjct: 64 GSGSGTQYSLKINSLQPEDFGSYYC 88
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 32 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE 66
+T++P++ + T + C ASGN ++W ++
Sbjct: 4 LTQSPASLSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|1G7H|A Chain A, Crystal Structure Of Hen Egg White Lysozyme (Hel)
Complexed With The Mutant Anti-Hel Monoclonal Antibody
D1.3(Vlw92a)
Length = 107
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR-------EMLPVDTSRNP-----RYN 162
+T++P++ + T + C ASGN ++W + ++L T+ R++
Sbjct: 4 LTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFS 63
Query: 163 LLTSGAPGALQITNSIEEDQGKYEC 187
SG +L+I + ED G Y C
Sbjct: 64 GSGSGTQYSLKINSLQPEDFGSYYC 88
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 32 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE 66
+T++P++ + T + C ASGN ++W ++
Sbjct: 4 LTQSPASLSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|1VFA|A Chain A, Bound Water Molecules And Conformational Stabilization
Help Mediate An Antigen-Antibody Association
pdb|1DVF|A Chain A, Idiotopic Antibody D1.3 Fv Fragment-Antiidiotopic Antibody
E5.2 Fv Fragment Complex
Length = 108
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR-------EMLPVDTSRNP-----RYN 162
+T++P++ + T + C ASGN ++W + ++L T+ R++
Sbjct: 4 LTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFS 63
Query: 163 LLTSGAPGALQITNSIEEDQGKYEC 187
SG +L+I + ED G Y C
Sbjct: 64 GSGSGTQYSLKINSLQPEDFGSYYC 88
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 32 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE 66
+T++P++ + T + C ASGN ++W ++
Sbjct: 4 LTQSPASLSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|2CQV|A Chain A, Solution Structure Of The Eighth Ig-Like Domain Of Human
Myosin Light Chain Kinase
Length = 114
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGAL 172
PQI + P + V + L +G P +W++ + S + + +G+ L
Sbjct: 8 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGS--KL 65
Query: 173 QITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205
I + +E G Y + EN++G+ + + V
Sbjct: 66 TILAARQEHCGCYTLLVENKLGSRQAQVNLTVV 98
>pdb|3DVG|A Chain A, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To
K63-Linked Di- Ubiquitin
Length = 217
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 21/113 (18%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE------MLPVDTSRN------PRY 161
Q+T++PS+ + + C AS + ++W ++ L + ++R+ R+
Sbjct: 4 QMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSARSLYSGVPSRF 63
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV--KGTQVDI 212
+ SG L I++ ED Y C +YS + L+ +GT+V+I
Sbjct: 64 SGSRSGTDFTLTISSLQPEDFATYYC-------QQYSSYSSLFTFGQGTKVEI 109
>pdb|1R24|A Chain A, Fab From Murine Igg3 Kappa
pdb|1R24|C Chain C, Fab From Murine Igg3 Kappa
Length = 206
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------MLPVDTSRNP-----RY 161
Q+T+ S+ V + ++ C AS + ++W ++ +L TSR R+
Sbjct: 3 QMTQITSSLSVSLGDRVIISCRASQDIGNFLNWYQQKPDGSLKLLIYYTSRLQSGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
+ SG +L I+N EED + C + + T L +K
Sbjct: 63 SGWGSGTDYSLTISNLEEEDIATFFCQQGKTLPYTFGGGTKLEIK 107
>pdb|3SV0|A Chain A, Crystal Structure Of Casein Kinase-1 Like Protein In Plant
Length = 483
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 126 ISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITN 176
IS + L S+ + P +S R+++P+DTS P T +PGA + T+
Sbjct: 375 ISASNFLGRSSGSSRRPAVSSSRDVMPIDTS-EPSRTRATDASPGAFRRTS 424
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 43 ISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTYIK 91
IS + L S+ + P +S R+++P+DTS P T +PG + +
Sbjct: 375 ISASNFLGRSSGSSRRPAVSSSRDVMPIDTS-EPSRTRATDASPGAFRR 422
>pdb|3TYF|A Chain A, Crystal Structure Of A Cd1d-Lysophosphatidylcholine
Reactive Inkt Tcr
pdb|3TYF|C Chain C, Crystal Structure Of A Cd1d-Lysophosphatidylcholine
Reactive Inkt Tcr
pdb|3TZV|A Chain A, Crystal Structure Of An Inkt Tcr In Complex With Cd1d-
Lysophosphatidylcholine
pdb|3TZV|G Chain G, Crystal Structure Of An Inkt Tcr In Complex With Cd1d-
Lysophosphatidylcholine
Length = 213
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 17/116 (14%)
Query: 111 GFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE------------MLPVDTSRN 158
G Q+ ++P + ++ L C+ + +P + W ++ +T N
Sbjct: 2 GKNQVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSN 61
Query: 159 PRY--NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
RY L +L IT S D Y CV + T + + +GTQ+ +
Sbjct: 62 GRYTATLDADTKQSSLHITASQLSDSASYICVVSDRGST---LGRLYFGRGTQLTV 114
>pdb|1JNL|L Chain L, Crystal Structure Of Fab-Estradiol Complexes
pdb|1JNN|L Chain L, Crystal Structure Of Fab-Estradiol Complexes
Length = 211
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 12/85 (14%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE------MLPVDTSRN------PRYN 162
+T+ P++ + T + C ASGN ++W ++ L V ++ R++
Sbjct: 4 MTQTPASLSASVGETVTITCRASGNIYNYLAWYQQKQGKSPQLLVYNAKTLVDGVPLRFS 63
Query: 163 LLTSGAPGALQITNSIEEDQGKYEC 187
SG +L+I + ED G Y C
Sbjct: 64 GSGSGTQYSLKINSLQPEDFGNYYC 88
>pdb|2V17|L Chain L, Structure Of The Complex Of Antibody Mn423 With A Fragment
Of Tau Protein
pdb|3L1O|L Chain L, Crystal Structure Of Monoclonal Antibody Mn423 Fab
Fragment With Free Combining Site, Crystallized In The
Presence Of Zinc
Length = 214
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 14/106 (13%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRN-------------PR 160
QIT++PS T ++C AS + ++W RE P T++ R
Sbjct: 3 QITQSPSYLAASPGETITINCRASKSIRKFLAWYREK-PGKTNKLLIYSGSTLQSGTPSR 61
Query: 161 YNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
++ SG L I+ ED Y C N+ + T L +K
Sbjct: 62 FSGSGSGTDFTLTISRLEPEDFAMYYCQQHNDYPLTFGAGTKLELK 107
>pdb|2EDR|A Chain A, Solution Structure Of The Ig-Like Domain (3361-3449) Of
Human Obscurin
Length = 102
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 129 TTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECV 188
T L C S P + RE L R++L GA LQI D G+Y CV
Sbjct: 25 TATLRCELSKAAPVEWRKGRESL----RDGDRHSLRQDGAVCELQICGLAVADAGEYSCV 80
Query: 189 AENE 192
E
Sbjct: 81 CGEE 84
>pdb|1I8M|L Chain L, Crystal Structure Of A Recombinant Anti-Single-Stranded
Dna Antibody Fragment Complexed With Dt5
pdb|1I8M|A Chain A, Crystal Structure Of A Recombinant Anti-Single-Stranded
Dna Antibody Fragment Complexed With Dt5
pdb|1P7K|L Chain L, Crystal Structure Of An Anti-Ssdna Antigen-Binding
Fragment (Fab) Bound To
4-(2-Hydroxyethyl)piperazine-1-Ethanesulfonic Acid
(Hepes)
pdb|1P7K|A Chain A, Crystal Structure Of An Anti-Ssdna Antigen-Binding
Fragment (Fab) Bound To
4-(2-Hydroxyethyl)piperazine-1-Ethanesulfonic Acid
(Hepes)
pdb|1XF2|L Chain L, Structure Of Fab Dna-1 Complexed With Dt3
pdb|1XF2|A Chain A, Structure Of Fab Dna-1 Complexed With Dt3
pdb|1XF3|L Chain L, Structure Of Ligand-Free Fab Dna-1 In Space Group P65
pdb|1XF3|A Chain A, Structure Of Ligand-Free Fab Dna-1 In Space Group P65
pdb|1XF4|L Chain L, Structure Of Ligand-Free Fab Dna-1 In Space Group P321
Solved From Crystals With Perfect Hemihedral Twinning
pdb|1XF4|A Chain A, Structure Of Ligand-Free Fab Dna-1 In Space Group P321
Solved From Crystals With Perfect Hemihedral Twinning
pdb|2FR4|L Chain L, Structure Of Fab Dna-1 Complexed With A Stem-loop Dna
Ligand
pdb|2FR4|A Chain A, Structure Of Fab Dna-1 Complexed With A Stem-loop Dna
Ligand
Length = 214
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 12/86 (13%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE------MLPVDTSRN------PRY 161
Q+T++P++ + T + C AS N ++W ++ L V ++ R+
Sbjct: 3 QMTQSPASLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQLLVYNAKTLAEGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYEC 187
+ SG +L+I + ED G Y C
Sbjct: 63 SGSGSGTQFSLKINSLQPEDFGSYYC 88
>pdb|2IFF|H Chain H, Structure Of An Antibody-Lysozyme Complex: Effect Of A
Conservative Mutation
pdb|1BQL|H Chain H, Structure Of An Anti-Hel Fab Fragment Complexed With
Bobwhite Quail Lysozyme
Length = 215
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 140 PPPKISWIREMLPVDTSRN--------PRYNLLTSGAPGALQITNSIEEDQGKYECVAEN 191
P + WI E+LP S N + TS + +Q+ + ED G Y C+ N
Sbjct: 41 PGHGLEWIGEILPGSGSTNYHERFKGKATFTADTSSSTAYMQLNSLTSEDSGVYYCLHGN 100
Query: 192 EVGTEYSPSTMLYV 205
+ T L V
Sbjct: 101 YDFDGWGQGTTLTV 114
>pdb|1YNT|A Chain A, Structure Of The Immunodominant Epitope Displayed By The
Surface Antigen 1 (Sag1) Of Toxoplasma Gondii Complexed
To A Monoclonal Antibody
pdb|1YNT|C Chain C, Structure Of The Immunodominant Epitope Displayed By The
Surface Antigen 1 (Sag1) Of Toxoplasma Gondii Complexed
To A Monoclonal Antibody
Length = 213
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 12/105 (11%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------MLPVDTSRN-----PRY 161
Q+T+ S+ + + C AS + ++W ++ +L TSR R+
Sbjct: 3 QVTQTTSSLSASLGDRVTISCRASQDISNYLNWYQQKPDGTVKLLIYYTSRLHSGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
+ SG +L I+N +ED Y C N + + T L +K
Sbjct: 63 SGSGSGTDYSLTISNLEQEDIATYFCQQGNTLPYTFGGGTKLEIK 107
>pdb|1MAM|L Chain L, Crystal Structure To 2.45 A Resolution Of A Monoclonal Fab
Specific For The Brucella A Cell Wall Polysaccharide
Antigen
Length = 214
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 12/105 (11%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------MLPVDTSRN-----PRY 161
Q+T+ S+ + + C AS + ++W ++ +L TSR R+
Sbjct: 3 QMTQTTSSLSASLGDRVTISCRASQDIYNYLNWYQQKPDGTVKLLIYYTSRLHSGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
+ SG +L I+N +ED Y C N + + T L +K
Sbjct: 63 SGSGSGTDYSLTISNLNQEDMATYICQQGNTLPFTFGSGTKLEIK 107
>pdb|1UWE|L Chain L, Molecular Mechanism Of Enantioselective Proton Transfer To
Carbon In Catalytic Antibody 14d9
pdb|1UWE|U Chain U, Molecular Mechanism Of Enantioselective Proton Transfer To
Carbon In Catalytic Antibody 14d9
pdb|1UWE|X Chain X, Molecular Mechanism Of Enantioselective Proton Transfer To
Carbon In Catalytic Antibody 14d9
Length = 213
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 12/106 (11%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------MLPVDTSRN-----PRYN 162
+T++PS + + C+AS N ++W ++ L TS R+
Sbjct: 5 MTQSPSFMSTSVGDRVSVTCAASQNVGTNVAWYQQKPGQPPKALIYSTSYRYSGVPDRFT 64
Query: 163 LLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGT 208
SG L I+N ED +Y C N + T L +K T
Sbjct: 65 GSGSGTDFTLTISNVNSEDLAEYFCQQYNIYPVTFGGGTKLEIKRT 110
>pdb|1YQV|H Chain H, The Crystal Structure Of The Antibody Fab Hyhel5 Complex
With Lysozyme At 1.7a Resolution
Length = 215
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 140 PPPKISWIREMLPVDTSRN--------PRYNLLTSGAPGALQITNSIEEDQGKYECVAEN 191
P + WI E+LP S N + TS + +Q+ + ED G Y C+ N
Sbjct: 41 PGHGLEWIGEILPGSGSTNYHERFKGKATFTADTSSSTAYMQLNSLTSEDSGVYYCLHGN 100
Query: 192 EVGTEYSPSTMLYV 205
+ T L V
Sbjct: 101 YDFDGWGQGTTLTV 114
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 118 APSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNS 177
AP+ + + V+ C + PP I W + V ++ R+ +L++ LQI
Sbjct: 106 APTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN---NYLQIRGI 162
Query: 178 IEEDQGKYEC 187
+ D+G Y C
Sbjct: 163 KKTDEGTYRC 172
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPK-ISWIR---EMLPVDTSRNPRYNLLTSGAP 169
Q+ PS + + + C +G+ K ISW E L + R +
Sbjct: 4 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISV--VWNDDDS 61
Query: 170 GALQITNSIEEDQGKYECVAENEVGTE 196
L I N+ +D G Y+CV E GT+
Sbjct: 62 STLTIYNANIDDAGIYKCVVTAEDGTQ 88
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 109 PPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGA 168
PP F Q+ P ++ + SG P P +SW V S + +++
Sbjct: 5 PPRFIQV---PENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTV-QSDDLHKMIVSEKG 60
Query: 169 PGALQITNSIEEDQGKYECVAENEVG 194
+L D G Y CVA+N G
Sbjct: 61 LHSLIFEVVRASDAGAYACVAKNRAG 86
>pdb|1A7P|L Chain L, Fv Fragment Of Mouse Monoclonal Antibody D1.3 (BalbC,
IGG1, K) Engineered Mutant Pro95l->ser On Variant Chain
L Glu81- >asp And Chain H Leu312->val
Length = 107
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 14/105 (13%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR-------EMLPVDTSRNP-----RYN 162
+T++P++ + T + C ASGN ++W + ++L T+ R++
Sbjct: 4 LTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFS 63
Query: 163 LLTSGAPGALQITNSIE-EDQGKYECVAENEVGTEYSPSTMLYVK 206
SG +L+I NS++ +D G Y C + T L +K
Sbjct: 64 GSGSGTQYSLKI-NSLQPDDFGSYYCQHFWSTSRTFGGGTKLEIK 107
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 32 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE 66
+T++P++ + T + C ASGN ++W ++
Sbjct: 4 LTQSPASLSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|2A6D|L Chain L, Crystal Structure Analysis Of The Anti-Arsonate Germline
Antibody 36-65 In Complex With A Phage Display Derived
Dodecapeptide Rlliadppspre
pdb|2A6D|A Chain A, Crystal Structure Analysis Of The Anti-Arsonate Germline
Antibody 36-65 In Complex With A Phage Display Derived
Dodecapeptide Rlliadppspre
pdb|2A6I|A Chain A, Crystal Structure Analysis Of The Anti-Arsonate Germline
Antibody 36-65 In Complex With A Phage Display Derived
Dodecapeptide Klasipthtspl
pdb|2A6J|L Chain L, Crystal Structure Analysis Of The Anti-Arsonate Germline
Antibody 36- 65
pdb|2A6J|A Chain A, Crystal Structure Analysis Of The Anti-Arsonate Germline
Antibody 36- 65
pdb|2A6K|A Chain A, Crystal Structure Analysis Of The Germline Antibody 36-65
Fab In Complex With The Dodecapeptide Slgdnltnhnlr
pdb|2A6K|L Chain L, Crystal Structure Analysis Of The Germline Antibody 36-65
Fab In Complex With The Dodecapeptide Slgdnltnhnlr
Length = 214
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 12/105 (11%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------MLPVDTSRN-----PRY 161
Q+T+ S+ + + C AS + ++W ++ +L TSR R+
Sbjct: 3 QMTQTTSSLSASLGDRVTISCRASQDISNYLNWYQQKPDGTVKLLIYYTSRLHSGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
+ SG +L I+N +ED Y C N + + T L +K
Sbjct: 63 SGSGSGTDYSLTISNLEQEDIATYFCQQGNTLPRTFGGGTKLEIK 107
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 13/88 (14%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDT-----SRNPRYNLLTSG 167
P I +AP + L C P +S ++ +LP T SR+PR ++L G
Sbjct: 353 PFIMDAPRDLNISEGRMAELKCRT-----PPMSSVKWLLPNGTVLSHASRHPRISVLNDG 407
Query: 168 APGALQITNSIEEDQGKYECVAENEVGT 195
L ++ + D G Y C+ N G
Sbjct: 408 T---LNFSHVLLSDTGVYTCMVTNVAGN 432
>pdb|4HC1|L Chain L, Crystal Structure Of A Loop Deleted Mutant Of Human
Madcam-1 D1d2 Complexed With Fab 10g3
pdb|4HC1|N Chain N, Crystal Structure Of A Loop Deleted Mutant Of Human
Madcam-1 D1d2 Complexed With Fab 10g3
Length = 214
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 12/104 (11%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE--------MLPVDTSRNP----RYN 162
+T++PS+ V + T C AS I W+++ ++ T+ R++
Sbjct: 4 MTQSPSSMSVSLGDTVSFTCHASQGIGRNIGWLQQKPGKSFKGLIYHGTNLKDGVPSRFS 63
Query: 163 LLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
SGA +L I+ ED Y C+ + + T L +K
Sbjct: 64 GSGSGADYSLTISRIESEDFADYYCIQYVQFPYTFGGGTKLEIK 107
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGAL 172
P+ P V + +C + PP ++W ++ + S +Y +G L
Sbjct: 483 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQS--VKYMKRYNGNDYGL 540
Query: 173 QITNSIEEDQGKYECVAENEVGTE 196
I +D+G+Y A+N GT+
Sbjct: 541 TINRVKGDDKGEYTVRAKNSYGTK 564
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGAL 172
P+ P V + +C + PP ++W ++ + S +Y +G L
Sbjct: 377 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQS--VKYMKRYNGNDYGL 434
Query: 173 QITNSIEEDQGKYECVAENEVGTE 196
I +D+G+Y A+N GT+
Sbjct: 435 TINRVKGDDKGEYTVRAKNSYGTK 458
>pdb|2PO6|C Chain C, Crystal Structure Of Cd1d-lipid-antigen Complexed With
Beta-2- Microglobulin, Nkt15 Alpha-chain And Nkt15
Beta-chain
pdb|2PO6|G Chain G, Crystal Structure Of Cd1d-lipid-antigen Complexed With
Beta-2- Microglobulin, Nkt15 Alpha-chain And Nkt15
Beta-chain
pdb|3SDX|E Chain E, Crystal Structure Of Human Autoreactive-Valpha24 Nkt Tcr
In Complex With Cd1d-Beta-Galactosylceramide
pdb|3SDX|G Chain G, Crystal Structure Of Human Autoreactive-Valpha24 Nkt Tcr
In Complex With Cd1d-Beta-Galactosylceramide
Length = 204
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 17/113 (15%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE------------MLPVDTSRNPRY 161
Q+ ++P + ++ L C+ + +P + W ++ +T N RY
Sbjct: 2 QVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRY 61
Query: 162 --NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
L +L IT S D Y CV + T + + +GTQ+ +
Sbjct: 62 TATLDADTKQSSLHITASQLSDSASYICVVSDRGST---LGRLYFGRGTQLTV 111
>pdb|2EYR|A Chain A, A Structural Basis For Selection And Cross-species
Reactivity Of The Semi-invariant Nkt Cell Receptor In
Cd1d/glycolipid Recognition
pdb|2EYS|A Chain A, A Structural Basis For Selection And Cross-Species
Reactivity Of The Semi-Invariant Nkt Cell Receptor In
Cd1dGLYCOLIPID RECOGNITION
pdb|2EYT|A Chain A, A Structural Basis For Selection And Cross-Species
Reactivity Of The Semi-Invariant Nkt Cell Receptor In
Cd1dGLYCOLIPID RECOGNITION
pdb|2EYT|C Chain C, A Structural Basis For Selection And Cross-Species
Reactivity Of The Semi-Invariant Nkt Cell Receptor In
Cd1dGLYCOLIPID RECOGNITION
Length = 210
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 17/113 (15%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE------------MLPVDTSRNPRY 161
Q+ ++P + ++ L C+ + +P + W ++ +T N RY
Sbjct: 5 QVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRY 64
Query: 162 --NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
L +L IT S D Y CV + T + + +GTQ+ +
Sbjct: 65 TATLDADTKQSSLHITASQLSDSASYICVVSDRGST---LGRLYFGRGTQLTV 114
>pdb|1NFD|E Chain E, An Alpha-Beta T Cell Receptor (Tcr) Heterodimer In Complex
With An Anti-Tcr Fab Fragment Derived From A Mitogenic
Antibody
pdb|1NFD|G Chain G, An Alpha-Beta T Cell Receptor (Tcr) Heterodimer In Complex
With An Anti-Tcr Fab Fragment Derived From A Mitogenic
Antibody
Length = 212
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 17/106 (16%)
Query: 119 PSTKVVEISHTTVLHCSASGNPPPKISWIRE--------MLPVDTSRN----PRYNLLTS 166
PS+ V + T + CS P W ++ ++ +D R R++ TS
Sbjct: 6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTS 65
Query: 167 GAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
G L I+ + ED+ Y C++ + +++ GTQ+ +
Sbjct: 66 GTTATLTISGAQPEDEAAYYCLSSYGDNND-----LVFGSGTQLTV 106
>pdb|1A7O|L Chain L, Fv Fragment Of Mouse Monoclonal Antibody D1.3 (BalbC,
IGG1, K) R96l Deletion Mutant On Variant For Chain L
Glu81->asp And Chain H Leu312->val
Length = 106
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR-------EMLPVDTSRNP-----RYN 162
+T++P++ + T + C ASGN ++W + ++L T+ R++
Sbjct: 4 LTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFS 63
Query: 163 LLTSGAPGALQITNSIEEDQGKYEC 187
SG +L+I + +D G Y C
Sbjct: 64 GSGSGTQYSLKINSLQPDDFGSYYC 88
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 32 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE 66
+T++P++ + T + C ASGN ++W ++
Sbjct: 4 LTQSPASLSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|2ZJS|L Chain L, Crystal Structure Of Secye Translocon From Thermus
Thermophilus With A Fab Fragment
Length = 214
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 12/105 (11%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------MLPVDTSRN-----PRY 161
Q+T+ S+ + + C AS + ++W ++ +L TSR R+
Sbjct: 3 QMTQTTSSLSASLGDRVTISCRASQDISNYLNWYQQKPDGTVKLLIYYTSRLHSGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
+ SG +L I+N +ED Y C N + + T L +K
Sbjct: 63 SGSGSGTDYSLTISNLEQEDIATYFCQQGNTLPWTFGGGTKLEIK 107
>pdb|2DM7|A Chain A, Solution Structure Of The 14th Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 108
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 4/79 (5%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQ 173
+ T+ TK T L C S P + W + P RY+L G LQ
Sbjct: 10 RFTQDLKTKEASEGATATLQCELSKVAP--VEWKKG--PETLRDGGRYSLKQDGTRCELQ 65
Query: 174 ITNSIEEDQGKYECVAENE 192
I + D G+Y C+ E
Sbjct: 66 IHDLSVADAGEYSCMCGQE 84
>pdb|3OJD|B Chain B, Anti-Indolicidin Monoclonal Antibody V2d2 (Fab Fragment)
Length = 224
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 161 YNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEY 197
++L TS LQI N ED Y C E + G+ Y
Sbjct: 70 FSLETSVRTAYLQINNLKNEDLATYFCARERDYGSRY 106
>pdb|3HUJ|E Chain E, Crystal Structure Of Human Cd1d-Alpha-Galactosylceramide
In Complex With Semi-Invariant Nkt Cell Receptor
pdb|3HUJ|G Chain G, Crystal Structure Of Human Cd1d-Alpha-Galactosylceramide
In Complex With Semi-Invariant Nkt Cell Receptor
pdb|3VWJ|C Chain C, Ternary Crystal Structure Of The Human Nkt Tcr-Cd1d-C20:2
Complex
pdb|3VWK|C Chain C, Ternary Crystal Structure Of The Human Nkt
Tcr-Cd1d-4'deoxy-Alpha- Galactosylceramide Complex
Length = 209
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 17/113 (15%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE------------MLPVDTSRNPRY 161
Q+ ++P + ++ L C+ + +P + W ++ +T N RY
Sbjct: 4 QVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRY 63
Query: 162 --NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
L +L IT S D Y CV + T + + +GTQ+ +
Sbjct: 64 TATLDADTKQSSLHITASQLSDSASYICVVSDRGST---LGRLYFGRGTQLTV 113
>pdb|2R4R|L Chain L, Crystal Structure Of The Human Beta2 Adrenoceptor
pdb|2R4S|L Chain L, Crystal Structure Of The Human Beta2 Adrenoceptor
pdb|3KJ6|L Chain L, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 214
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 14/106 (13%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRN--PRYNLLTSGAPGA 171
++T++PS+ + + C AS + +SW ++ P + + R N L G P
Sbjct: 3 KMTQSPSSMYASLGERVTITCKASQDINSYLSWFQQK-PGKSPKTLIYRANRLVDGVPSR 61
Query: 172 LQITNSIEE-----------DQGKYECVAENEVGTEYSPSTMLYVK 206
T S ++ D G Y C+ +E + T L +K
Sbjct: 62 FIGTGSGQDYSLTISSLDYADMGIYYCLQYDEFPYTFGGGTKLEIK 107
>pdb|1B2W|L Chain L, Comparison Of The Three-Dimensional Structures Of A
Humanized And A Chimeric Fab Of An
Anti-Gamma-Interferon Antibody
pdb|1T04|A Chain A, Three Dimensional Structure Of A Humanized
Anti-Ifn-Gamma Fab In C2 Space Group
pdb|1T04|C Chain C, Three Dimensional Structure Of A Humanized
Anti-Ifn-Gamma Fab In C2 Space Group
pdb|1T3F|A Chain A, Three Dimensional Structure Of A Humanized
Anti-Ifn-Gamma Fab (Huzaf) In P21 21 21 Space Group
Length = 214
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 31 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTYI 90
Q+T++PST + + C AS N +SW ++ + P+ LL GA Y
Sbjct: 3 QMTQSPSTLSASVGDRVTITCKASENVDTYVSWYQQK----PGKAPK--LLIYGASNRYT 56
Query: 91 KIKPNLFS 98
+ P+ FS
Sbjct: 57 GV-PSRFS 63
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE 149
Q+T++PST + + C AS N +SW ++
Sbjct: 3 QMTQSPSTLSASVGDRVTITCKASENVDTYVSWYQQ 38
>pdb|1N7M|H Chain H, Germline 7g12 With N-Methylmesoporphyrin
pdb|1NGZ|A Chain A, Chimeric Germline Fab 7g12-Apo
Length = 213
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 19/110 (17%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREM------LPVDTSRN------PRYN 162
+T+ P + + C AS N ++W ++ L + ++ N R+
Sbjct: 4 MTQTPKFMSTSVGDRVSITCKASQNVGTAVAWYQQKPGQSPKLLIYSASNRYTGVPDRFT 63
Query: 163 LLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
SG L I+N ED Y C +YS + + GT+V+I
Sbjct: 64 GSGSGTDFTLTISNMQSEDLADYFC-------QQYSSYPLTFGGGTKVEI 106
>pdb|2NCM|A Chain A, Neural Cell Adhesion Molecule, Nmr, 20 Structures
Length = 99
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPK-ISWIR---EMLPVDTSRNPRYNLLTSGAP 169
Q+ PS + + + C +G+ K ISW E L + R +
Sbjct: 4 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISV--VWNDDDS 61
Query: 170 GALQITNSIEEDQGKYECVAENEVGTE 196
L I N+ +D G Y+CV E GT+
Sbjct: 62 STLTIYNANIDDAGIYKCVVTAEDGTQ 88
>pdb|1A7N|L Chain L, Fv Fragment Of Mouse Monoclonal Antibody D1.3 (BalbC,
IGG1, K) Variant For Chain L Glu81->asp And Chain H
Leu312->val
pdb|1A7R|L Chain L, Fv Fragment Of Mouse Monoclonal Antibody D1.3 (BalbC,
IGG1, K) Variant Chain L Glu81->asp
Length = 107
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR-------EMLPVDTSRNP-----RYN 162
+T++P++ + T + C ASGN ++W + ++L T+ R++
Sbjct: 4 LTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFS 63
Query: 163 LLTSGAPGALQITNSIEEDQGKYEC 187
SG +L+I + +D G Y C
Sbjct: 64 GSGSGTQYSLKINSLQPDDFGSYYC 88
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 32 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE 66
+T++P++ + T + C ASGN ++W ++
Sbjct: 4 LTQSPASLSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|2EDL|A Chain A, Solution Structure Of The Ig-Like Domain (3801-3897) Of
Human Obscurin
Length = 110
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 129 TTVLHCSASGNPPPKISWIREMLPVDTSRN-PRYNLLTSGAPGALQITNSIEEDQGKYEC 187
T VL C S P + W + +T R RY+L G LQI D G+Y C
Sbjct: 25 TAVLQCELSKAAP--VEWRK---GSETLRGGDRYSLRQDGTRCELQIHGLSVADTGEYSC 79
Query: 188 VAENE 192
V E
Sbjct: 80 VCGQE 84
>pdb|2PET|A Chain A, Lutheran Glycoprotein, N-Terminal Domains 1 And 2.
pdb|2PF6|A Chain A, Lutheran Glycoprotein, N-Terminal Domains 1 And 2
pdb|2PF6|B Chain B, Lutheran Glycoprotein, N-Terminal Domains 1 And 2
Length = 231
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 30 PQITEAPSTK----VVEISHTTVLHC-SASGNPPPKISWIR--EMLPVDTSRNP 76
P+ TE K V+E S + C S +GNP PKI+W R + L V NP
Sbjct: 116 PEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNP 169
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 113 PQITEAPSTK----VVEISHTTVLHC-SASGNPPPKISWIR--EMLPVDTSRNP 159
P+ TE K V+E S + C S +GNP PKI+W R + L V NP
Sbjct: 116 PEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNP 169
>pdb|3OJD|A Chain A, Anti-Indolicidin Monoclonal Antibody V2d2 (Fab Fragment)
Length = 214
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 12/85 (14%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR-------EMLPVDTSRNP-----RYN 162
+T+ P++ + + + C ASGN ++W + ++L + S R++
Sbjct: 4 MTQTPASLSASVGESVTITCKASGNIHNYLAWYQQKGGKSPQLLVFNASTLADGVPSRFS 63
Query: 163 LLTSGAPGALQITNSIEEDQGKYEC 187
SG +L+I + ED G Y C
Sbjct: 64 GSGSGTQYSLKINSLQPEDFGSYYC 88
>pdb|1NGX|A Chain A, Chimeric Germline Fab 7g12 With Jeffamine Fragment Bound
pdb|1NGX|L Chain L, Chimeric Germline Fab 7g12 With Jeffamine Fragment Bound
Length = 213
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 19/110 (17%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREM------LPVDTSRN------PRYN 162
+T+ P + + C AS N ++W ++ L + ++ N R+
Sbjct: 4 MTQTPKFMSTSVGDRVSITCKASQNVGTAVAWYQQKPGQSPKLLIYSASNRYTGVPDRFT 63
Query: 163 LLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
SG L I+N ED Y C +YS + + GT+V+I
Sbjct: 64 GSGSGTDFTLTISNMQSEDLADYFC-------QQYSSYPLTFGGGTKVEI 106
>pdb|3E8U|H Chain H, Crystal Structure And Thermodynamic Analysis Of Diagnostic
Fab 106.3 Complexed With Bnp 5-13 (C10a) Reveal Basis Of
Selective Molecular Recognition
Length = 217
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 161 YNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
++L TS LQI N D G Y C + G +Y + +GT V +
Sbjct: 70 FSLETSANTAYLQINNLNNGDMGTYFCTRSHRFGLDY------WGQGTSVTV 115
>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex
pdb|2C5D|D Chain D, Structure Of A Minimal Gas6-Axl Complex
Length = 195
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 14/98 (14%)
Query: 111 GFPQITEAPSTKVVEISHTTVLHCSASGNPPP-KISWIREMLPVDTS--RNPRYNLLTSG 167
G P E P + V + L C A G P P + W+++ +P+ T+ P+ +L G
Sbjct: 105 GLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPG 164
Query: 168 APGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205
L T+S + C A N G S + + V
Sbjct: 165 ----LNKTSS-------FSCEAHNAKGVTTSRTATITV 191
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 28 GFPQITEAPSTKVVEISHTTVLHCSASGNPPP-KISWIREMLPVDTS 73
G P E P + V + L C A G P P + W+++ +P+ T+
Sbjct: 105 GLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATA 151
>pdb|2CDE|A Chain A, Structure And Binding Kinetics Of Three Different Human
Cd1d-Alpha-Galactosylceramide Specific T Cell Receptors
- Inkt-Tcr
pdb|2CDE|C Chain C, Structure And Binding Kinetics Of Three Different Human
Cd1d-Alpha-Galactosylceramide Specific T Cell Receptors
- Inkt-Tcr
pdb|2CDE|E Chain E, Structure And Binding Kinetics Of Three Different Human
Cd1d-Alpha-Galactosylceramide Specific T Cell Receptors
- Inkt-Tcr
Length = 192
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 17/113 (15%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE------------MLPVDTSRNPRY 161
Q+ ++P + ++ L C+ + +P + W ++ +T N RY
Sbjct: 2 QVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRY 61
Query: 162 --NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
L +L IT S D Y CV + T + + +GTQ+ +
Sbjct: 62 TATLDADTKQSSLHITASQLSDSASYICVVSDRGST---LGRLYFGRGTQLTV 111
>pdb|3HNS|L Chain L, Cs-35 Fab Complex With Oligoarabinofuranosyl
Hexasaccharide
pdb|3HNT|L Chain L, Cs-35 Fab Complex With A Linear, Terminal
Oligoarabinofuranosyl Tetrasaccharide From
Lipoarabinomannan
pdb|3HNV|L Chain L, Cs-35 Fab Complex With Oligoarabinofuranosyl
Tetrasaccharide (Branch Part Of Hexasaccharide)
Length = 214
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------MLPVDTSRN-----PRY 161
Q+T+ S+ + + C AS + ++W ++ +L TSR R+
Sbjct: 3 QMTQTTSSLSASLGDRVTIGCRASQDIGSYLNWYQQKPDGAVRLLIYYTSRLHSGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
+ SG +L I+N +ED G Y C + + + T L +K
Sbjct: 63 SGSGSGTHFSLTISNLEQEDIGTYFCHQDTKPPYTFGSGTKLEIK 107
>pdb|1E4W|L Chain L, Crossreactive Binding Of A Circularized Peptide To An
Anti- Tgfalpha Antibody Fab-Fragment
pdb|1E4X|L Chain L, Crossreactive Binding Of A Circularized Peptide To An
Anti-Tgfalpha Antibody Fab-Fragment
pdb|1E4X|M Chain M, Crossreactive Binding Of A Circularized Peptide To An
Anti-Tgfalpha Antibody Fab-Fragment
Length = 214
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 12/105 (11%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------MLPVDTSRN-----PRY 161
Q+T+ PS+ + + C AS + ++W ++ +L TS R+
Sbjct: 3 QMTQTPSSLSASLGDRVTISCRASQDISHYLNWFQQKPDGTVKLLIYYTSTLHSGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
+ SG +L I+N EED Y C + + T L +K
Sbjct: 63 SGSGSGTDYSLTISNLEEEDIAFYFCQQGGALPFTFGSGTKLAIK 107
>pdb|4FNL|L Chain L, Crystal Structure Of Broadly Neutralizing Antibody C05
pdb|4FNL|M Chain M, Crystal Structure Of Broadly Neutralizing Antibody C05
pdb|4FP8|L Chain L, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin, Ha1 Subunit
pdb|4FP8|M Chain M, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin, Ha1 Subunit
pdb|4FP8|N Chain N, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin, Ha1 Subunit
pdb|4FP8|O Chain O, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin, Ha1 Subunit
pdb|4FQR|BB Chain b, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|DD Chain d, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|FF Chain f, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|HH Chain h, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|JJ Chain j, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|LL Chain l, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|NN Chain n, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|PP Chain p, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|RR Chain r, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|TT Chain t, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|VV Chain v, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|XX Chain x, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
Length = 214
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 12/107 (11%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------MLPVDTSRNP-----RY 161
Q+T++PS+ + L C AS + ++W ++ +L D S R+
Sbjct: 3 QLTQSPSSLSASVGDRVTLTCQASQDIRKFLNWYQQKPGKGPKLLIYDASNLQRGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGT 208
+ SG L I++ ED G Y C + + + T + +K T
Sbjct: 63 SGGGSGTDFTLIISSLQPEDVGTYYCQQYDGLPFTFGGGTKVVIKRT 109
>pdb|1UM4|L Chain L, Catalytic Antibody 21h3 With Hapten
pdb|1UM5|L Chain L, Catalytic Antibody 21h3 With Alcohol Substrate
pdb|1UM6|L Chain L, Catalytic Antibody 21h3
Length = 219
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 19/111 (17%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREM------------LPVDTSRNPRY 161
Q+T++PS+ + L C AS + W+++ +D+ R+
Sbjct: 4 QMTQSPSSLSASLGERVSLTCRASQEISGYLYWLQQKPDGTIKRLIYAGSTLDSGVPKRF 63
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
+ SG+ +L I++ ED Y C+ +Y+ + GT+V+I
Sbjct: 64 SGSRSGSDYSLTISSLESEDFADYYCL-------QYASYPRTFGGGTKVEI 107
>pdb|3Q5T|A Chain A, V BetaV BETA HOMODIMERIZATION-Based Pre-Tcr Model
Suggested By Tcr Beta Crystal Structures
Length = 241
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 21/114 (18%)
Query: 115 ITEAPSTKVVEISHTTVLHCS-ASGNP------------PPKISWIREMLPVDTSRNP-- 159
+T++P V++ + C SG+ P + + R+ +D S+ P
Sbjct: 5 VTQSPRYAVLQEGQSVSFWCDPISGHDTLYWYQQPRDQGPQLLVYFRDEAVIDNSQLPSD 64
Query: 160 RYNLLT-SGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
R++ + G L+I ++ + D Y C + + VGTE + + KGT++ +
Sbjct: 65 RFSAVRPKGTNSTLKIQSAKQGDTATYLCASSSGVGTE-----VFFGKGTRLTV 113
>pdb|3QPX|L Chain L, Crystal Structure Of Fab C2507
Length = 213
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 13/107 (12%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREML------------PVDTSRNPRY 161
Q+T++PS + L C AS N ++W ++ L + T R+
Sbjct: 3 QMTQSPSLLSASVGDRVTLSCKASQNIYNYLNWYQQKLGEAPKLLIYYTDRLQTGIPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGT 208
+ SG+ L I++ ED Y C N T + T L +K T
Sbjct: 63 SGDGSGSDYTLTISSLQPEDVATYFCQQYNSRDT-FGAGTKLDLKRT 108
>pdb|3BGF|L Chain L, X-Ray Crystal Structure Of The Sars Coronavirus Spike
Receptor Binding Domain In Complex With F26g19 Fab
pdb|3BGF|C Chain C, X-Ray Crystal Structure Of The Sars Coronavirus Spike
Receptor Binding Domain In Complex With F26g19 Fab
Length = 212
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 12/86 (13%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE------------MLPVDTSRNPRYN 162
+T++PS+ + L C AS +SW++E +D+ R++
Sbjct: 4 MTQSPSSLSASLGERVSLTCRASQEISGYLSWLQEKPDGTIKRLIYAASTLDSGVPKRFS 63
Query: 163 LLTSGAPGALQITNSIEEDQGKYECV 188
SG+ +L I++ ED Y C+
Sbjct: 64 GSRSGSDYSLTISSLESEDFADYYCL 89
>pdb|2XKN|A Chain A, Crystal Structure Of The Fab Fragment Of The Anti-Egfr
Antibody 7a7
pdb|2XKN|C Chain C, Crystal Structure Of The Fab Fragment Of The Anti-Egfr
Antibody 7a7
Length = 223
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 12/105 (11%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------MLPVDTSR-----NPRY 161
Q+T+ S+ + + C AS + ++W ++ +L TSR R+
Sbjct: 3 QMTQTTSSLSASLGDRVTISCRASQDISNYLNWYQQKPDGTVKLLIYYTSRLHSGVTSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
+ SG +L I+N +ED Y C N + + T + +K
Sbjct: 63 SGSGSGTDYSLTISNLEQEDIATYFCQQGNTLPWTFGGGTKVEIK 107
>pdb|2OR8|A Chain A, Tim-1
pdb|2OR8|B Chain B, Tim-1
Length = 116
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 153 VDTSRNPRYNLLTSGAPG--ALQITNSIEEDQGKYECVAE 190
V ++ RYNL + G +L I NS+E D G Y C E
Sbjct: 54 VTYQKSSRYNLKGHISEGDVSLTIENSVESDSGLYCCRVE 93
>pdb|4HFU|L Chain L, Crystal Structure Of Fab 8m2 In Complex With A H2n2
Influenza Virus Hemagglutinin
Length = 215
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 18/111 (16%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------MLPVDTSRN-----PRY 161
Q+T++P++ V L C AS + ++W ++ +L S R+
Sbjct: 3 QLTQSPASLSVSPGERATLSCRASQSVAGNLAWYQQKPGQAPRLLIYGASTRATGIPARF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
+ SG L IT+ ED Y C N + P T + +GT+VDI
Sbjct: 63 SGSGSGTEFTLTITSLQSEDFAVYYCQQYN----NWPPWT--FGQGTKVDI 107
>pdb|3ESV|F Chain F, Crystal Structure Of The Engineered Neutralizing Antibody
M18
pdb|3ESV|G Chain G, Crystal Structure Of The Engineered Neutralizing Antibody
M18
pdb|3ETB|F Chain F, Crystal Structure Of The Engineered Neutralizing Antibody
M18 Complexed With Anthrax Protective Antigen Domain 4
pdb|3ETB|G Chain G, Crystal Structure Of The Engineered Neutralizing Antibody
M18 Complexed With Anthrax Protective Antigen Domain 4
pdb|3ETB|H Chain H, Crystal Structure Of The Engineered Neutralizing Antibody
M18 Complexed With Anthrax Protective Antigen Domain 4
pdb|3ETB|I Chain I, Crystal Structure Of The Engineered Neutralizing Antibody
M18 Complexed With Anthrax Protective Antigen Domain 4
Length = 252
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 12/90 (13%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------MLPVDTSRNP-----RY 161
Q+T+ S+ + + C AS + ++W ++ L TSR R+
Sbjct: 8 QMTQTTSSLSASLGDRVTVSCRASQDIRNYLNWYQQKPDGTVKFLIYYTSRLQPGVPSRF 67
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAEN 191
+ SG +L I N +ED G Y C N
Sbjct: 68 SGSGSGTDYSLTINNLEQEDIGTYFCQQGN 97
>pdb|1OAK|L Chain L, Crystal Structure Of The Von Willebrand Factor (Vwf) A1
Domain In Complex With The Function Blocking Nmc-4 Fab
Length = 212
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------MLPVDTSRN-----PRY 161
Q+T++PS+ + + CSAS + ++W ++ +L TS R+
Sbjct: 3 QMTQSPSSLSASLGDRVTISCSASQDINKYLNWYQQKPDGAVKLLIFYTSSLHSGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
+ SG +L I+N ED Y C ++ + T L VK
Sbjct: 63 SGSGSGTDYSLTISNLEPEDIATYYCQQYEKLPWTFGGGTKLEVK 107
>pdb|1JV5|A Chain A, Anti-Blood Group A Fv
Length = 107
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 12/105 (11%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------MLPVDTSRN-----PRY 161
Q+T+ S+ + + C AS + ++W ++ +L TSR R+
Sbjct: 3 QMTQTTSSLSASLGDRVTISCRASQDINNYLNWYQQKPDGTVKLLIHYTSRLHSGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
+ SG +L I+N +ED Y C N + + T L +K
Sbjct: 63 SGSGSGTDYSLTISNLEQEDIATYFCQQGNTLPWTFGGGTKLEIK 107
>pdb|1B4J|L Chain L, Comparison Of The Three-Dimensional Structures Of A
Humanized And A Chimeric Fab Of An
Anti-Gamma-Interferon Antibody
Length = 214
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 32 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTYIK 91
+T++P + V I L C AS N +SW ++ ++P+ LL GA Y
Sbjct: 4 MTQSPKSMYVSIGERVTLSCKASENVDTYVSWYQQ----KPEQSPK--LLIYGASNRYTG 57
Query: 92 IKPNLFS 98
+ P+ F+
Sbjct: 58 V-PDRFT 63
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 38/106 (35%), Gaps = 12/106 (11%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------MLPVDTSRN-----PRYN 162
+T++P + V I L C AS N +SW ++ +L S R+
Sbjct: 4 MTQSPKSMYVSIGERVTLSCKASENVDTYVSWYQQKPEQSPKLLIYGASNRYTGVPDRFT 63
Query: 163 LLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGT 208
S L I++ ED Y C + T L +K T
Sbjct: 64 GSGSATDFTLTISSVQAEDLADYHCGQSYNYPFTFGSGTKLEIKRT 109
>pdb|3V7A|G Chain G, Structural Basis For Broad Detection Of Genogroup Ii
Noroviruses By A Monoclonal Antibody That Binds To A
Site Occluded In The Viral Particle
pdb|3V7A|H Chain H, Structural Basis For Broad Detection Of Genogroup Ii
Noroviruses By A Monoclonal Antibody That Binds To A
Site Occluded In The Viral Particle
Length = 215
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 20/90 (22%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPR---YNLLT----- 165
Q+T++P++ + T + C AS N ++W ++ ++P+ YN+ T
Sbjct: 3 QMTQSPASLSASVGETVTITCRASENIYSYLAWYQQ----KQGKSPQLLVYNVKTLAEGV 58
Query: 166 --------SGAPGALQITNSIEEDQGKYEC 187
SG +L+I + ED G Y C
Sbjct: 59 PSRFSGSGSGTQFSLKINSLQPEDFGSYYC 88
>pdb|1FNS|L Chain L, Crystal Structure Of The Von Willebrand Factor (Vwf) A1
Domain I546v Mutant In Complex With The Function
Blocking Fab Nmc4
Length = 214
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------MLPVDTSRN-----PRY 161
Q+T++PS+ + + CSAS + ++W ++ +L TS R+
Sbjct: 3 QMTQSPSSLSASLGDRVTISCSASQDINKYLNWYQQKPDGAVKLLIFYTSSLHSGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
+ SG +L I+N ED Y C ++ + T L VK
Sbjct: 63 SGSGSGTDYSLTISNLEPEDIATYYCQQYEKLPWTFGGGTKLEVK 107
>pdb|3KYK|L Chain L, Crystal Structure Of Li33 Igg1 Fab
pdb|3KYM|A Chain A, Crystal Structure Of Li33 Igg2 Di-Fab
pdb|3KYM|C Chain C, Crystal Structure Of Li33 Igg2 Di-Fab
pdb|3KYM|E Chain E, Crystal Structure Of Li33 Igg2 Di-Fab
pdb|3KYM|G Chain G, Crystal Structure Of Li33 Igg2 Di-Fab
pdb|3KYM|I Chain I, Crystal Structure Of Li33 Igg2 Di-Fab
pdb|3KYM|K Chain K, Crystal Structure Of Li33 Igg2 Di-Fab
pdb|3KYM|M Chain M, Crystal Structure Of Li33 Igg2 Di-Fab
pdb|3KYM|O Chain O, Crystal Structure Of Li33 Igg2 Di-Fab
Length = 214
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 19/111 (17%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------MLPVDTSRN-----PRY 161
Q+T++P T + L C AS + ++W ++ +L D S R+
Sbjct: 3 QMTQSPGTLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
+ SG L I++ ED Y C +Y + + GT+V+I
Sbjct: 63 SGSGSGTEFTLTISSLQSEDFAVYYC-------QQYDKWPLTFGGGTKVEI 106
>pdb|1XIW|C Chain C, Crystal Structure Of Human Cd3-ED DIMER IN COMPLEX WITH A
Ucht1 Single-Chain Antibody Fragment
pdb|1XIW|G Chain G, Crystal Structure Of Human Cd3-ED DIMER IN COMPLEX WITH A
Ucht1 Single-Chain Antibody Fragment
Length = 108
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------MLPVDTSRN-----PRY 161
Q+T+ S+ + + C AS + ++W ++ +L TSR ++
Sbjct: 4 QMTQTTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLHSGVPSKF 63
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
+ SG +L I+N +ED Y C N + ++ T L +K
Sbjct: 64 SGSGSGTDYSLTISNLEQEDIATYFCQQGNTLPWTFAGGTKLEIK 108
>pdb|2ARJ|L Chain L, Cd8alpha-Alpha In Complex With Yts 105.18 Fab
pdb|2ARJ|A Chain A, Cd8alpha-Alpha In Complex With Yts 105.18 Fab
Length = 211
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 32 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE 66
+T++PS+ V L+C AS N I+W ++
Sbjct: 4 MTQSPSSLAVSAGERVTLNCKASQNVRNNIAWYQQ 38
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE 149
+T++PS+ V L+C AS N I+W ++
Sbjct: 4 MTQSPSSLAVSAGERVTLNCKASQNVRNNIAWYQQ 38
>pdb|3LIZ|L Chain L, Crystal Structure Of Bla G 2 Complexed With Fab 4c3
Length = 211
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 14/105 (13%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNP--RYNLLTSGAPG-- 170
+T++PS+ + + C AS + +SW ++ P + + R + L G P
Sbjct: 4 LTQSPSSMYASLGERVTITCKASQDINNYLSWFQQK-PGKSPKTLIYRADRLVDGVPSRV 62
Query: 171 ---------ALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
+L I++ ED G Y C+ +E+ + T L +K
Sbjct: 63 SGSGSGQDYSLTISSLEYEDLGIYYCLQYDELPYTFGGGTKLEIK 107
>pdb|1A7Q|L Chain L, Fv Fragment Of Mouse Monoclonal Antibody D1.3 (BalbC,
IGG1, K) High Affinity Expressed Variant Containing
Ser26l->gly, Ile29l->thr, Glu81l->asp, Thr97l->ser,
Pro240h->leu, Asp258h->ala, Lys281h->glu, Asn283h->asp
And Leu312h->val
Length = 106
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 12/85 (14%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR-------EMLPVDTSRNP-----RYN 162
+T++P++ + T + C A GN ++W + ++L T+ R++
Sbjct: 4 LTQSPASLSASVGETVTITCRAGGNTHNYLAWYQQKQGKSPQLLVYYTTTLAAGVPSRFS 63
Query: 163 LLTSGAPGALQITNSIEEDQGKYEC 187
SG +L+I + +D G Y C
Sbjct: 64 GSGSGTQYSLKINSLQPDDFGSYYC 88
>pdb|1QLE|L Chain L, Cryo-structure Of The Paracoccus Denitrificans
Four-subunit Cytochrome C Oxidase In The Completely
Oxidized State Complexed With An Antibody Fv Fragment
Length = 108
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 12/86 (13%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE------MLPVDTSRN------PRY 161
++T+ P + + T + C AS N ++W ++ V ++ R+
Sbjct: 3 ELTQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYEC 187
+ SG +L+I + + ED G Y C
Sbjct: 63 SGSGSGTQFSLKINSLLPEDFGSYYC 88
>pdb|1JHL|L Chain L, Three-Dimensional Structure Of A Heteroclitic Antigen-
Antibody Cross-Reaction Complex
Length = 108
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 12/105 (11%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------ML-----PVDTSRNPRY 161
++T++PS V T ++C AS + ++W +E +L + + R+
Sbjct: 3 ELTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
+ SG L I++ ED Y C NE + T L +K
Sbjct: 63 SGSGSGTDFTLTISSLEPEDFAMYICQQHNEYPWTFGGGTKLEIK 107
>pdb|3RVW|C Chain C, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 212
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 14/105 (13%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRN--PRYNLLTSGAPG-- 170
+T++P + + + C AS + +SW+++ P + + R N L +G P
Sbjct: 4 MTQSPFSMYATLGERVTITCKASQDIYSYLSWLQQK-PGKSLKTLIYRANRLITGVPSRF 62
Query: 171 ---------ALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
+L I++ ED G Y C+ +E + T L +K
Sbjct: 63 SGSGSGQDYSLTISSLEYEDMGIYYCLQYDEFPYTFGGGTKLEMK 107
>pdb|3FMG|L Chain L, Structure Of Rotavirus Outer Capsid Protein Vp7 Trimer In
Co A Neutralizing Fab
Length = 211
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE------MLPVDTSRN------PRY 161
Q+T++P++ + T + C S N ++W ++ L V ++ R+
Sbjct: 3 QMTQSPASLSASVGETVTITCRPSENIYSYLAWYQQKQGKSPQLLVYKAKTLPEGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAEN 191
+ SG +L+I++ ED G Y C N
Sbjct: 63 SGSGSGTHFSLKISSVQPEDFGTYYCQHHN 92
>pdb|3UMT|A Chain A, Scfv12, Anti-Bcla Antibody Single Chain Variable Fragment
Length = 256
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 50/111 (45%), Gaps = 19/111 (17%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE------------MLPVDTSRNPRY 161
Q+T++PS+ + + C AS + ++W+++ +D+ R+
Sbjct: 140 QLTQSPSSLSASLGERVSITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRF 199
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
+ SG+ +L I++ ED Y C+ +Y+ S + GT+++I
Sbjct: 200 SGSRSGSDYSLTISSLESEDFVDYYCL-------QYASSPPTFGGGTKLEI 243
>pdb|1FSK|C Chain C, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|F Chain F, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|I Chain I, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|L Chain L, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
Length = 220
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 21/92 (22%)
Query: 117 EAPSTKVVEISHTTVLHCSASG-------------NPPPKISWIREMLPVD--TSRNPRY 161
+ P T++V + +L C ASG P + W+ + P D T+ N ++
Sbjct: 5 QQPGTELVRPGASVILSCKASGYTFTSYWINWVKQRPGQGLEWVGNIFPSDSYTNYNQKF 64
Query: 162 N------LLTSGAPGALQITNSIEEDQGKYEC 187
+ S + +Q+ + ED Y C
Sbjct: 65 KDKATLTVDKSSSTAYMQVNSPTSEDSAVYYC 96
>pdb|3RVT|C Chain C, Structure Of 4c1 Fab In P212121 Space Group
pdb|3RVU|C Chain C, Structure Of 4c1 Fab In C2221 Space Group
pdb|3RVV|C Chain C, Crystal Structure Of Der F 1 Complexed With Fab 4c1
pdb|3RVX|C Chain C, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 213
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 14/105 (13%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRN--PRYNLLTSGAPG-- 170
+T++P + + + C AS + +SW+++ P + + R N L +G P
Sbjct: 4 MTQSPFSMYATLGERVTITCKASQDIYSYLSWLQQK-PGKSLKTLIYRANRLITGVPSRF 62
Query: 171 ---------ALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
+L I++ ED G Y C+ +E + T L +K
Sbjct: 63 SGSGSGQDYSLTISSLEYEDMGIYYCLQYDEFPYTFGGGTKLEMK 107
>pdb|1F3R|B Chain B, Complex Between Fv Antibody Fragment And An Analogue Of
The Main Immunogenic Region Of The Acetylcholine
Receptor
Length = 257
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 13/108 (12%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREML------------PVDTSRNPRY 161
++T++PS + L C S N ++W ++ L + T R+
Sbjct: 141 KLTQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRF 200
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQ 209
+ SG L I++ ED Y C N G + T L +K +
Sbjct: 201 SGSGSGTDYTLTISSLQPEDVATYFCYQYNN-GYTFGAGTKLELKAAE 247
>pdb|1BVK|A Chain A, Humanized Anti-Lysozyme Fv Complexed With Lysozyme
pdb|1BVK|D Chain D, Humanized Anti-Lysozyme Fv Complexed With Lysozyme
pdb|1BVL|B Chain B, Humanized Anti-Lysozyme Fv
pdb|1BVL|D Chain D, Humanized Anti-Lysozyme Fv
Length = 108
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 31 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE 66
Q+T++PS+ + + C ASGN ++W ++
Sbjct: 3 QMTQSPSSLSASVGDRVTITCRASGNIHNYLAWYQQ 38
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE 149
Q+T++PS+ + + C ASGN ++W ++
Sbjct: 3 QMTQSPSSLSASVGDRVTITCRASGNIHNYLAWYQQ 38
>pdb|2ADF|L Chain L, Crystal Structure And Paratope Determination Of 82d6a3, An
Antithrombotic Antibody Directed Against The Von
Willebrand Factor A3-Domain
Length = 209
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 13/105 (12%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWI--------REMLPVDTSRNP----RY 161
Q+T++PS+ + + C AS + I+W R ++ ++ P R+
Sbjct: 3 QMTQSPSSLSASLGGKVTITCKASQDINKYIAWYQHKPGKGPRLLIHYTSTLQPGIPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
+ SG + I+N ED Y C+ + + T + T L +K
Sbjct: 63 SGSGSGRDYSFSISNLEPEDIATYYCLQYDNLRT-FGGGTKLEIK 106
>pdb|2YBR|B Chain B, Crystal Structure Of The Human Derived Single Chain
Antibody Fragment (scfv) 9004g In Complex With Cn2 Toxin
From The Scorpion Centruroides Noxius Hoffmann
pdb|2YBR|E Chain E, Crystal Structure Of The Human Derived Single Chain
Antibody Fragment (scfv) 9004g In Complex With Cn2 Toxin
From The Scorpion Centruroides Noxius Hoffmann
pdb|2YBR|H Chain H, Crystal Structure Of The Human Derived Single Chain
Antibody Fragment (scfv) 9004g In Complex With Cn2 Toxin
From The Scorpion Centruroides Noxius Hoffmann
pdb|2YC1|B Chain B, Crystal Structure Of The Human Derived Single Chain
Antibody Fragment (scfv) 9004g In Complex With Cn2 Toxin
From The Scorpion Centruroides Noxius Hoffmann
pdb|2YC1|E Chain E, Crystal Structure Of The Human Derived Single Chain
Antibody Fragment (scfv) 9004g In Complex With Cn2 Toxin
From The Scorpion Centruroides Noxius Hoffmann
Length = 146
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 19/110 (17%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------MLPVDTSRN-----PRYN 162
+T++P+T V L C AS + ++W ++ +L D S R+
Sbjct: 19 LTQSPATLSVSPGERATLSCRASQSVRSYLAWYQQKPGQAPRLLFSDASNRATGIPARFT 78
Query: 163 LLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
SG L I++ ED Y C YSP T + +GT+V+I
Sbjct: 79 GSGSGTDFTLTISSLEPEDFAIYYCQQ-----YRYSPRT--FGQGTKVEI 121
>pdb|1CZ8|L Chain L, Vascular Endothelial Growth Factor In Complex With An
Affinity Matured Antibody
pdb|1CZ8|X Chain X, Vascular Endothelial Growth Factor In Complex With An
Affinity Matured Antibody
Length = 213
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 19/111 (17%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE--------MLPVDTSRN----PRY 161
Q+T++PS+ + + CSAS + ++W ++ ++ +S + R+
Sbjct: 3 QLTQSPSSLSASVGDRVTITCSASQDISNYLNWYQQKPGKAPKVLIYFTSSLHSGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
+ SG L I++ ED Y C +YS + +GT+V+I
Sbjct: 63 SGSGSGTDFTLTISSLQPEDFATYYC-------QQYSTVPWTFGQGTKVEI 106
>pdb|2V5Y|A Chain A, Crystal Structure Of The Receptor Protein Tyrosine
Phosphatase Mu Ectodomain
Length = 731
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 170 GALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
+ + N+ + D GKY C+ E G S L VK
Sbjct: 223 ASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK 259
>pdb|1K6Q|L Chain L, Crystal Structure Of Antibody Fab Fragment D3
Length = 210
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE--------MLPVDTSRNP----RY 161
++T++PS+ + + + C AS + +SW ++ ++ TS R+
Sbjct: 3 KMTQSPSSMSASLGESVTITCKASRDIKSYLSWYQQKPWKSPKTLIYYATSLADGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
+ SG +L I++ +D Y C+ E + T L +K
Sbjct: 63 SGSGSGQDYSLTISSLESDDTATYYCLQHGESPFTFGSGTKLELK 107
>pdb|3SO5|A Chain A, Crystal Structure Of An Immunoglobulin I-Set Domain Of
Lrig3 Protein (Lrig3) From Mus Musculus At 1.70 A
Resolution
pdb|3SO5|B Chain B, Crystal Structure Of An Immunoglobulin I-Set Domain Of
Lrig3 Protein (Lrig3) From Mus Musculus At 1.70 A
Resolution
Length = 112
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 42/114 (36%), Gaps = 14/114 (12%)
Query: 103 YSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNP--PPKISWIREMLPVDTSRNPR 160
+ D P PQIT P T+ CSA+ + P +W + + +
Sbjct: 3 FVCDDFPX--PQITVQPETQSAIXGSDVSFTCSAASSSDSPXTFAWXXDNEALQDAEXEN 60
Query: 161 YNLLTSGAPGA--------LQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
Y L A G L++ N +G Y+CV N G+ YS L +
Sbjct: 61 YAHLR--AQGGELXEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112
>pdb|3HC3|L Chain L, Bha10 Igg1 Fab Double Mutant Variant - Antibody Directed
At Human Ltbr
pdb|3HC4|L Chain L, Bha10 Igg1 Fab Quadruple Mutant Variant - Antibody
Directed At Human Ltbr
Length = 213
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 19/111 (17%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------MLPVDTSRN-----PRY 161
Q+T++PS+ + + C AS N ++W ++ +L S R+
Sbjct: 3 QMTQSPSSLSASVGDRVTITCKASQNVGINVAWYQQKPGKAPKLLISSASYRYSGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
+ SG L I++ ED Y C +Y + +GT+V+I
Sbjct: 63 SGSGSGTDFTLTISSLQPEDFATYFC-------QQYDTYPFTFGQGTKVEI 106
>pdb|1AR1|D Chain D, Structure At 2.7 Angstrom Resolution Of The Paracoccus
Denitrificans Two-Subunit Cytochrome C Oxidase Complexed
With An Antibody Fv Fragment
pdb|1MQK|L Chain L, Crystal Structure Of The Unliganded Fv-Fragment Of The
Anti- Cytochrome C Oxidase Antibody 7e2
pdb|3EHB|D Chain D, A D-Pathway Mutation Decouples The Paracoccus
Denitrificans Cytochrome C Oxidase By Altering The Side
Chain Orientation Of A Distant, Conserved Glutamate
pdb|3HB3|D Chain D, High Resolution Crystal Structure Of Paracoccus
Denitrificans Cytochrome C Oxidase
Length = 120
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 12/86 (13%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE------MLPVDTSRN------PRY 161
++T+ P + + T + C AS N ++W ++ V ++ R+
Sbjct: 3 ELTQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYEC 187
+ SG +L+I + + ED G Y C
Sbjct: 63 SGSGSGTQFSLKINSLLPEDFGSYYC 88
>pdb|1BJ1|L Chain L, Vascular Endothelial Growth Factor In Complex With A
Neutralizing Antibody
pdb|1BJ1|J Chain J, Vascular Endothelial Growth Factor In Complex With A
Neutralizing Antibody
Length = 214
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 19/111 (17%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE--------MLPVDTSRN----PRY 161
Q+T++PS+ + + CSAS + ++W ++ ++ +S + R+
Sbjct: 3 QMTQSPSSLSASVGDRVTITCSASQDISNYLNWYQQKPGKAPKVLIYFTSSLHSGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
+ SG L I++ ED Y C +YS + +GT+V+I
Sbjct: 63 SGSGSGTDFTLTISSLQPEDFATYYC-------QQYSTVPWTFGQGTKVEI 106
>pdb|1FN4|A Chain A, Crystal Structure Of Fab198, An Efficient Protector Of
Acetylcholine Receptor Against Myasthenogenic Antibodies
pdb|1FN4|C Chain C, Crystal Structure Of Fab198, An Efficient Protector Of
Acetylcholine Receptor Against Myasthenogenic Antibodies
Length = 211
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 13/107 (12%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREML------------PVDTSRNPRY 161
++T++PS + L C S N ++W ++ L + T R+
Sbjct: 3 KLTQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGT 208
+ SG L I++ ED Y C N G + T L +K T
Sbjct: 63 SGSGSGTDYTLTISSLQPEDVATYFCYQYNN-GYTFGAGTKLELKRT 108
>pdb|1TJG|L Chain L, Crystal Structure Of The Broadly Neutralizing Anti-Hiv-1
Antibody 2f5 In Complex With A Gp41 7mer Epitope
pdb|1TJH|L Chain L, Crystal Structure Of The Broadly Neutralizing Anti-Hiv-1
Antibody 2f5 In Complex With A Gp41 11mer Epitope
pdb|1TJI|L Chain L, Crystal Structure Of The Broadly Neutralizing Anti-Hiv-1
Antibody 2f5 In Complex With A Gp41 17mer Epitope
Length = 214
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 19/111 (17%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR-------EMLPVDTSRN-----PRY 161
Q+T++PS+ + + C AS ++W R ++L D S R+
Sbjct: 3 QLTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
+ SG L I+ ED Y C + P T + GT+VD+
Sbjct: 63 SGSGSGTEFTLTISTLRPEDFATYYCQQ-----LHFYPHT--FGGGTRVDV 106
>pdb|3LEV|L Chain L, Hiv-1 Antibody 2f5 In Complex With Epitope Scaffold Es2
pdb|3MOA|L Chain L, Crystal Structure Of The Neutralizing Hiv Antibody 2f5 Fab
Fragment (Recombinantly Produced Fab) With 17 Aa Gp41
Mper-Derived Peptide
pdb|3MOB|L Chain L, Crystal Structure Of The Neutralizing Hiv Antibody 2f5 Fab
Fragment (Recombinantly Produced Fab) With 11 Aa Gp41
Mper-Derived Peptide
pdb|3MOD|L Chain L, Crystal Structure Of The Neutralizing Hiv Antibody 2f5 Fab
Fragment (Recombinantly Produced Igg) With 11 Aa Gp41
Mper-Derived Peptide
Length = 214
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 19/111 (17%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR-------EMLPVDTSRN-----PRY 161
Q+T++PS+ + + C AS ++W R ++L D S R+
Sbjct: 3 QLTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
+ SG L I+ ED Y C + P T + GT+VD+
Sbjct: 63 SGSGSGTEFTLTISTLRPEDFATYYCQQ-----LHFYPHT--FGGGTRVDV 106
>pdb|2DQI|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant (Ly50a) Complexed
With Hen Egg Lysozyme
Length = 107
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 14/105 (13%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------MLPVDTSRN-----PRYN 162
+T++P+T V ++ L C AS + + W ++ +L S++ R++
Sbjct: 4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKAASQSISGIPSRFS 63
Query: 163 LLTSGAPGALQITNSIE-EDQGKYECVAENEVGTEYSPSTMLYVK 206
SG L I NS+E ED G Y C N + T L +K
Sbjct: 64 GSGSGTDFTLSI-NSVETEDFGMYFCQQSNSWPYTFGGGTKLEIK 107
>pdb|3EJJ|X Chain X, Structure Of M-Csf Bound To The First Three Domains Of Fms
Length = 289
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 171 ALQITNSIEEDQGKYECVAENEVGTE 196
AL + +D G Y CVA N+VGT
Sbjct: 246 ALSLNAVDFQDAGIYSCVASNDVGTR 271
>pdb|1NGY|A Chain A, Chimeric Mature Fab 7g12-Apo
Length = 213
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 19/110 (17%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREM------LPVDTSRN------PRYN 162
+T+ P + + C AS N ++W ++ L + ++ N R+
Sbjct: 4 MTQTPKFMSTTVGDRVSITCKASQNVGTPVAWYQQKPGQSPKLLIYSASNRYTGVPDRFT 63
Query: 163 LLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
SG L I+N ED Y C +YS + + GT+V+I
Sbjct: 64 GSGSGTDFTLTISNMQSEDLADYFC-------QQYSSYPLTFGGGTKVEI 106
>pdb|4EXP|X Chain X, Structure Of Mouse Interleukin-34 In Complex With Mouse
Fms
Length = 283
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 171 ALQITNSIEEDQGKYECVAENEVGTE 196
AL + +D G Y CVA N+VGT
Sbjct: 246 ALSLNAVDFQDAGIYSCVASNDVGTR 271
>pdb|1U8K|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Leldkwasl
Length = 214
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 19/111 (17%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR-------EMLPVDTSRN-----PRY 161
Q+T++PS+ + + C AS ++W R ++L D S R+
Sbjct: 3 QLTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
+ SG L I+ ED Y C + P T + GT+VD+
Sbjct: 63 SGSGSGTEFTLTISTLRPEDFATYYCQQ-----LHFYPHT--FGGGTRVDV 106
>pdb|4GMS|L Chain L, Crystal Structure Of Heterosubtypic Fab S1391 IN COMPLEX
WITH Influenza A H3 Hemagglutinin
pdb|4GMS|M Chain M, Crystal Structure Of Heterosubtypic Fab S1391 IN COMPLEX
WITH Influenza A H3 Hemagglutinin
pdb|4GMS|N Chain N, Crystal Structure Of Heterosubtypic Fab S1391 IN COMPLEX
WITH Influenza A H3 Hemagglutinin
pdb|4GMT|L Chain L, Crystal Structure Of Heterosubtypic Fab S1391
pdb|4GMT|M Chain M, Crystal Structure Of Heterosubtypic Fab S1391
Length = 214
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 12/85 (14%)
Query: 134 CSASGNPPPKISWIRE--------MLPVDTSRN----PRYNLLTSGAPGALQITNSIEED 181
C AS N ++W +E ++ ++R R+ SG L ITN ED
Sbjct: 23 CKASQNVDTNVAWYQEKPGQSPKTLIYSASNRYSGVPDRFTGSASGTDFTLTITNVQSED 82
Query: 182 QGKYECVAENEVGTEYSPSTMLYVK 206
+Y C N + T L +K
Sbjct: 83 LAEYFCQQYNSYPYTFGGGTKLEIK 107
>pdb|1CFS|A Chain A, Anti-P24 (Hiv-1) Fab Fragment Cb41 Complexed With An
Epitope-Unrelated Peptide
pdb|1CFT|A Chain A, Anti-P24 (Hiv-1) Fab Fragment Cb41 Complexed With An
Epitope-Unrelated D-Peptide
pdb|1CFN|A Chain A, Anti-P24 (Hiv-1) Fab Fragment Cb41 Complexed With An
Epitope-Related Peptide
pdb|1CFQ|A Chain A, Anti-P24 (Hiv-1) Fab Fragment Cb41
pdb|1HH6|A Chain A, Anti-P24 (Hiv-1) Fab Fragment Cb41 Complexed With A
Peptide
pdb|1HH9|A Chain A, Anti-P24 (Hiv-1) Fab Fragment Cb41 Complexed With A
Peptide
pdb|1HI6|A Chain A, Anti-P24 (Hiv-1) Fab Fragment Cb41 Complexed With A
Peptide
Length = 214
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 27/115 (23%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWI----------------REMLPVDTSR 157
++T++PS+ + + C AS + ++W R M+ V +
Sbjct: 3 KMTQSPSSMYTSLGERVTITCKASQDINSFLTWFLQKPGKSPKTLIYRANRLMIGVPS-- 60
Query: 158 NPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
R++ SG +L I++ ED G Y C+ +Y + + GT++D+
Sbjct: 61 --RFSGSGSGQTYSLTISSLEYEDMGIYYCL-------QYDDFPLTFGAGTKLDL 106
>pdb|2F5A|L Chain L, Crystal Structure Of Fab' From The Hiv-1 Neutralizing
Antibody 2f5
Length = 213
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 19/111 (17%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR-------EMLPVDTSRN-----PRY 161
Q+T++PS+ + + C AS ++W R ++L D S R+
Sbjct: 3 QLTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
+ SG L I+ ED Y C + P T + GT+VD+
Sbjct: 63 SGSGSGTEFTLTISTLRPEDFATYYCQQ-----LHFYPHT--FGGGTRVDV 106
>pdb|3D0L|A Chain A, Crystal Structure Of The Hiv-1 Broadly Neutralizing
Antibody 2f5 In Complex With The Gp41 Fp-Mper Hyb3k
Construct
514gigalflgflgaags528kk-Ahx-655kneqelleldkwaslwn671
Length = 214
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 19/111 (17%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR-------EMLPVDTSRN-----PRY 161
Q+T++PS+ + + C AS ++W R ++L D S R+
Sbjct: 3 QLTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
+ SG L I+ ED Y C + P T + GT+VD+
Sbjct: 63 SGSGSGTEFTLTISTLRPEDFATYYCQQ-----LHFYPHT--FGGGTRVDV 106
>pdb|2F5B|L Chain L, Crystal Structure Of Fab' From The Hiv-1 Neutralizing
Antibody 2f5 In Complex With Its Gp41 Epitope
pdb|1U8H|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Aldkwas
pdb|1U8I|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Eldkwan
pdb|1U8J|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Eldkwag
pdb|1U8L|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Dldrwas
pdb|1U8M|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Eldkyas
pdb|1U8N|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Eldkfas
pdb|1U8O|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Eldkhas
pdb|1U8P|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Ecdkwcs
pdb|1U8Q|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Elekwas
pdb|1U91|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Analog Endkw- [dap]-S (Cyclic)
pdb|1U92|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Analog E-[dap]- Dkwqs (Cyclic)
pdb|1U93|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Analog Eqdkw- [dap]-S (Cyclic)
pdb|1U95|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Eldhwas
pdb|2P8L|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Elleldkwaslwn
pdb|2P8M|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Elleldkwaslwn In New Crystal Form
pdb|2P8P|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Leldkwaslw[n-Ac]
pdb|2PR4|L Chain L, Crystal Structure Of Fab' From The Hiv-1 Neutralizing
Antibody 2f5
pdb|2PW1|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Eldkwnsl
pdb|2PW2|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Eldkwksl
pdb|3D0V|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Lleldkwaslw
pdb|3DRO|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing Antibody
2f5 In Complex With Gp41 Peptide Elleldkwaslwn Grown In
Ammonium Sulfate
pdb|3DRQ|A Chain A, Crystal Structure Of The Hiv-1 Broadly Neutralizing
Antibody 2f5 In Complex With The Gp41 Fp-Mper Hyb3k
Construct
514gigalflgflgaags528kk-Ahx-655kneqelleldkwaslwn671
Soaked In Peg2- Propanol Solution
pdb|3BQU|A Chain A, Crystal Structure Of The 2f5 Fab'-3h6 Fab Complex
pdb|3DRT|A Chain A, Crystal Structure Of The Hiv-1 Broadly Neutralizing
Antibody 2f5 In Complex With The Gp41 Scrambledfp-Mper
Scrhyb3k Construct
Gigafgllgflaagskk-Ahx-K656neqelleldkwaslwn671
pdb|3EGS|A Chain A, Crystal Structure Of The Hiv-1 Broadly Neutralizing
Antibody 2f5 In Complex With The Gp41 Scrambledfp-Mper
Scrhyb3k Construct
Gigafgllgflaagskk-Ahx-K656neqelleldkwaslwn671 Soaked In
Ammonium Sulfate
pdb|3IDJ|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 Fab' Fragment In Complex With
Gp41 Peptide Analog Eld(Orn)was
pdb|3IDM|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 Fab' Fragment In Complex With
Gp41 Peptide Analog Eld(Nrg)was
pdb|3IDN|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 Fab' Fragment In Complex With
Gp41 Peptide Analog Eld(Paf)was
pdb|3IDG|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Aldkwd
pdb|3IDI|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 Fab' Fragment In Complex With
Gp41 Peptide Aldkwnq
Length = 214
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 19/111 (17%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR-------EMLPVDTSRNP-----RY 161
Q+T++PS+ + + C AS ++W R ++L D S R+
Sbjct: 3 QLTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
+ SG L I+ ED Y C + P T + GT+VD+
Sbjct: 63 SGSGSGTEFTLTISTLRPEDFATYYCQQ-----LHFYPHT--FGGGTRVDV 106
>pdb|3FCT|A Chain A, Mature Metal Chelatase Catalytic Antibody With Hapten
pdb|3FCT|C Chain C, Mature Metal Chelatase Catalytic Antibody With Hapten
pdb|1NGW|L Chain L, Chimeric Affinity Matured Fab 7g12 Complexed With
Mesoporphyrin
pdb|1NGW|A Chain A, Chimeric Affinity Matured Fab 7g12 Complexed With
Mesoporphyrin
Length = 213
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 19/110 (17%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREM------LPVDTSRN------PRYN 162
+T+ P + + C AS N ++W ++ L + ++ N R+
Sbjct: 4 MTQTPKFMSTTVGDRVSITCKASQNVGTPVAWYQQKPGQSPKLLIYSASNRYTGVPDRFT 63
Query: 163 LLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
SG L I+N ED Y C +YS + + GT+V+I
Sbjct: 64 GSGSGTDFTLTISNMQSEDLADYFC-------QQYSSYPLTFGGGTKVEI 106
>pdb|1BOG|A Chain A, Anti-P24 (Hiv-1) Fab Fragment Cb41 Complexed With An
Epitope-Homologous Peptide
Length = 214
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 27/115 (23%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWI----------------REMLPVDTSR 157
++T++PS+ + + C AS + ++W R M+ V +
Sbjct: 3 KMTQSPSSMYTSLGERVTITCKASQDINSFLTWFLQKPGKSPKTLIYRANRLMIGVPS-- 60
Query: 158 NPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
R++ SG +L I++ ED G Y C+ +Y + + GT++D+
Sbjct: 61 --RFSGSGSGQTYSLTISSLEYEDMGIYYCL-------QYDDFPLTFGAGTKLDL 106
>pdb|1JRH|L Chain L, Complex (AntibodyANTIGEN)
Length = 213
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 20/111 (18%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE------------MLPVDTSRNPRY 161
++T++PS+ V + + C AS + +++W ++ ++T R+
Sbjct: 3 EMTQSPSSFSVSLGDRVTITCKASEDIYNRLAWYQQKPGNAPRLLISGATSLETEVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
+ SG L IT+ ED Y C + ST + GT+++I
Sbjct: 63 SGSGSGKDYTLSITSLQTEDVATYYC--------QQYWSTWTFGGGTKLEI 105
>pdb|2YPV|L Chain L, Crystal Structure Of The Meningococcal Vaccine Antigen
Factor H Binding Protein In Complex With A Bactericidal
Antibody
Length = 214
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 14/105 (13%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNP--RYNLLTSGAPG-- 170
+T++PS+ + L C AS + ++W ++ P + + R N L G P
Sbjct: 4 LTQSPSSIYASLGERVTLTCKASQDIHNYLNWFQQK-PGKSPKTLIYRANRLVDGVPSRF 62
Query: 171 ---------ALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
+L I++ ED G Y C+ +E + T L +K
Sbjct: 63 SGGGSGQDYSLTISSLEFEDIGIYYCLQYDEFPPTFGGGTRLEIK 107
>pdb|3A67|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant Ln31d Complexed
With White Lysozyme
Length = 107
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 14/105 (13%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------MLPVDTSRN-----PRYN 162
+T++P+T V ++ L C AS + + W ++ +L S++ R++
Sbjct: 4 LTQSPATLSVTPGNSVSLSCRASQSIGDNLHWYQQKSHESPRLLIKYASQSISGIPSRFS 63
Query: 163 LLTSGAPGALQITNSIE-EDQGKYECVAENEVGTEYSPSTMLYVK 206
SG L I NS+E ED G Y C N + T L +K
Sbjct: 64 GSGSGTDFTLSI-NSVETEDFGMYFCQQSNSWPYTFGGGTKLEIK 107
>pdb|1J1O|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant Ly50f Complexed
With Hen Egg White Lysozyme
Length = 107
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 14/105 (13%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------MLPVDTSRN-----PRYN 162
+T++P+T V ++ L C AS + + W ++ +L S++ R++
Sbjct: 4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKFASQSISGIPSRFS 63
Query: 163 LLTSGAPGALQITNSIE-EDQGKYECVAENEVGTEYSPSTMLYVK 206
SG L I NS+E ED G Y C N + T L +K
Sbjct: 64 GSGSGTDFTLSI-NSVETEDFGMYFCQQSNSWPYTFGGGTKLEIK 107
>pdb|1IGM|L Chain L, Three Dimensional Structure Of An Fv From A Human Igm
Immunoglobulin
Length = 115
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 42/107 (39%), Gaps = 12/107 (11%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISW------------IREMLPVDTSRNPRY 161
Q+T++PS+ + + C AS + ++W I + ++T R+
Sbjct: 3 QMTQSPSSLSASVGDRVTITCQASQDISNYLAWYQQKPGKAPELRIYDASNLETGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGT 208
+ SG I++ ED Y C + + P T + +K T
Sbjct: 63 SGSGSGTDFTFTISSLQPEDIATYYCQQYQNLPLTFGPGTKVDIKRT 109
>pdb|3HC0|L Chain L, Bha10 Igg1 Wild-Type Fab - Antibody Directed At Human Ltbr
pdb|3HC0|B Chain B, Bha10 Igg1 Wild-Type Fab - Antibody Directed At Human Ltbr
Length = 213
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 19/111 (17%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE--------MLPVDTSRN----PRY 161
Q+T++PS+ + + C AS N ++W ++ ++ + R R+
Sbjct: 3 QMTQSPSSLSASVGDRVTITCKASQNVGINVAWYQQKPGKAPKSLISSASYRYSGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
+ SG L I++ ED Y C +Y + +GT+V+I
Sbjct: 63 SGSGSGTDFTLTISSLQPEDFATYFC-------QQYDTYPFTFGQGTKVEI 106
>pdb|3UAJ|L Chain L, Crystal Structure Of The Envelope Glycoprotein Ectodomain
From Dengue Virus Serotype 4 In Complex With The Fab
Fragment Of The Chimpanzee Monoclonal Antibody 5h2
pdb|3UAJ|D Chain D, Crystal Structure Of The Envelope Glycoprotein Ectodomain
From Dengue Virus Serotype 4 In Complex With The Fab
Fragment Of The Chimpanzee Monoclonal Antibody 5h2
pdb|3UC0|L Chain L, Crystal Structure Of Domain I Of The Envelope Glycoprotein
Ectodomain From Dengue Virus Serotype 4 In Complex With
The Fab Fragment Of The Chimpanzee Monoclonal Antibody
5h2
pdb|3UC0|M Chain M, Crystal Structure Of Domain I Of The Envelope Glycoprotein
Ectodomain From Dengue Virus Serotype 4 In Complex With
The Fab Fragment Of The Chimpanzee Monoclonal Antibody
5h2
Length = 215
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 12/107 (11%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-------MLPVDTSRNP-----RY 161
Q+T++PS+ + + C AS + +++W ++ +L D S R+
Sbjct: 4 QMTQSPSSLSASVGDRVTITCRASQDISIRLNWYQQKPGKAPKLLIYDASTLESGVPSRF 63
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGT 208
+ SG L I++ ED Y C N + T + +K T
Sbjct: 64 SGSGSGTDFTLTISSLQPEDFATYYCQQFNSYPLTFGGGTKVEIKRT 110
>pdb|1UJ3|A Chain A, Crystal Structure Of A Humanized Fab Fragment Of Anti-
Tissue-Factor Antibody In Complex With Tissue Factor
Length = 215
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 19/111 (17%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE--------MLPVDTSRNP----RY 161
Q+T++PS+ + + C AS + +SW ++ ++ TS R+
Sbjct: 3 QMTQSPSSLSASVGDRVTITCKASQDIKSFLSWYQQKPEKAPKSLIYYATSLADGVPSRF 62
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
+ SG L I++ ED Y C+ E SP T + GT+V+I
Sbjct: 63 SGSGSGTDYTLTISSLQPEDFATYYCLQHGE-----SPYT--FGGGTKVEI 106
>pdb|1GAF|L Chain L, 48g7 Hybridoma Line Fab Complexed With Hapten 5-(Para-
Nitrophenyl Phosphonate)-Pentanoic Acid
Length = 214
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 21/112 (18%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRN-------------PR 160
Q+T++PS+ + L C AS + W+++ P T + R
Sbjct: 3 QMTQSPSSLSASLGERVSLTCRASQEINGYLGWLQQK-PDGTIKRLIYAASTLHSGVPKR 61
Query: 161 YNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
++ SG+ +L I++ ED Y C+ +Y+ + GT+V+I
Sbjct: 62 FSGSRSGSDYSLTISSLESEDFADYYCL-------QYASYPRTFGGGTKVEI 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.132 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,344,392
Number of Sequences: 62578
Number of extensions: 325051
Number of successful extensions: 1851
Number of sequences better than 100.0: 366
Number of HSP's better than 100.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 264
Number of HSP's that attempted gapping in prelim test: 1316
Number of HSP's gapped (non-prelim): 713
length of query: 212
length of database: 14,973,337
effective HSP length: 95
effective length of query: 117
effective length of database: 9,028,427
effective search space: 1056325959
effective search space used: 1056325959
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)