Query psy2441
Match_columns 212
No_of_seqs 156 out of 1324
Neff 11.5
Searched_HMMs 46136
Date Sat Aug 17 01:00:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2441.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2441hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 8.3E-29 1.8E-33 197.5 18.1 193 3-208 306-516 (1051)
2 KOG4194|consensus 99.9 2.9E-25 6.2E-30 167.4 14.2 191 3-205 586-795 (873)
3 KOG3513|consensus 99.9 1.1E-23 2.3E-28 168.6 17.1 203 3-211 398-617 (1051)
4 KOG4221|consensus 99.9 7.2E-22 1.6E-26 158.5 17.4 199 3-209 113-329 (1381)
5 PHA02785 IL-beta-binding prote 99.9 1.5E-20 3.2E-25 138.7 20.0 192 3-197 94-319 (326)
6 KOG4221|consensus 99.9 8E-22 1.7E-26 158.3 13.2 192 3-208 205-418 (1381)
7 KOG4222|consensus 99.9 3.7E-21 8.1E-26 153.7 11.1 194 3-209 104-316 (1281)
8 cd05762 Ig8_MLCK Eighth immuno 99.8 8.8E-20 1.9E-24 111.3 11.5 96 113-211 1-96 (98)
9 KOG4222|consensus 99.8 8.4E-20 1.8E-24 146.1 13.5 188 3-204 199-409 (1281)
10 KOG4194|consensus 99.8 1.1E-19 2.4E-24 137.6 13.2 175 27-211 501-709 (873)
11 PHA02826 IL-1 receptor-like pr 99.8 1.6E-18 3.5E-23 120.9 15.7 147 36-193 29-211 (227)
12 cd05851 Ig3_Contactin-1 Third 99.8 6.2E-18 1.4E-22 101.2 10.1 87 113-206 2-88 (88)
13 cd05894 Ig_C5_MyBP-C C5 immuno 99.8 3.7E-17 7.9E-22 97.3 11.0 82 121-204 4-85 (86)
14 cd05747 Ig5_Titin_like M5, fif 99.7 4.6E-17 1E-21 98.5 11.4 88 113-203 4-91 (92)
15 cd05745 Ig3_Peroxidasin Third 99.7 2.1E-17 4.5E-22 95.8 8.4 74 126-205 1-74 (74)
16 cd05852 Ig5_Contactin-1 Fifth 99.7 3E-17 6.4E-22 94.5 8.8 73 127-205 1-73 (73)
17 cd05737 Ig_Myomesin_like_C C-t 99.7 9.8E-17 2.1E-21 97.0 10.6 83 119-204 8-91 (92)
18 cd05730 Ig3_NCAM-1_like Third 99.7 1.7E-16 3.8E-21 96.6 11.4 83 121-207 12-94 (95)
19 cd05892 Ig_Myotilin_C C-termin 99.7 7.2E-17 1.6E-21 93.2 8.9 74 130-205 1-75 (75)
20 cd04975 Ig4_SCFR_like Fourth i 99.7 1.5E-16 3.3E-21 97.2 10.3 86 120-207 11-101 (101)
21 PF07679 I-set: Immunoglobulin 99.7 1.3E-16 2.9E-21 96.3 10.0 90 113-205 1-90 (90)
22 PHA02785 IL-beta-binding prote 99.7 9.2E-16 2E-20 113.4 15.8 148 38-197 35-204 (326)
23 cd05867 Ig4_L1-CAM_like Fourth 99.7 2.4E-16 5.1E-21 91.9 10.1 74 127-205 1-75 (76)
24 cd05735 Ig8_DSCAM Eight immuno 99.7 3E-16 6.4E-21 93.9 10.5 83 127-211 1-87 (88)
25 cd05869 Ig5_NCAM-1 Fifth immun 99.7 3.2E-16 7E-21 95.7 10.9 92 113-205 3-97 (97)
26 cd05868 Ig4_NrCAM Fourth immun 99.7 2.6E-16 5.6E-21 91.6 9.6 75 127-205 1-75 (76)
27 cd04972 Ig_TrkABC_d4 Fourth do 99.7 5.8E-16 1.3E-20 93.3 10.9 85 118-205 6-90 (90)
28 cd05893 Ig_Palladin_C C-termin 99.7 1.9E-16 4.2E-21 91.5 8.1 74 130-205 1-75 (75)
29 cd05870 Ig5_NCAM-2 Fifth immun 99.7 4.9E-16 1.1E-20 95.1 10.2 91 113-205 3-98 (98)
30 cd05728 Ig4_Contactin-2-like F 99.7 4.7E-16 1E-20 92.6 9.8 82 117-205 4-85 (85)
31 cd04969 Ig5_Contactin_like Fif 99.7 4.1E-16 8.9E-21 90.2 9.1 73 127-205 1-73 (73)
32 cd05863 Ig2_VEGFR-3 Second imm 99.7 2.7E-16 5.8E-21 88.4 8.0 66 130-206 1-66 (67)
33 cd04968 Ig3_Contactin_like Thi 99.7 7.1E-16 1.5E-20 92.5 10.4 86 113-205 2-87 (88)
34 cd05740 Ig_CEACAM_D4 Fourth im 99.7 6.3E-16 1.4E-20 92.9 10.2 81 119-205 10-90 (91)
35 cd05738 Ig2_RPTP_IIa_LAR_like 99.7 5.3E-16 1.1E-20 89.8 9.3 74 130-206 1-74 (74)
36 cd05723 Ig4_Neogenin Fourth im 99.7 4.7E-16 1E-20 89.3 8.9 71 129-205 1-71 (71)
37 cd05859 Ig4_PDGFR-alpha Fourth 99.7 7.2E-16 1.6E-20 94.3 10.1 85 121-207 12-101 (101)
38 cd05743 Ig_Perlecan_D2_like Im 99.7 7.5E-16 1.6E-20 90.2 9.5 76 127-205 1-76 (78)
39 cd05732 Ig5_NCAM-1_like Fifth 99.7 1.2E-15 2.6E-20 93.2 10.8 90 113-204 3-95 (96)
40 cd05865 Ig1_NCAM-1 First immun 99.7 9.9E-16 2.1E-20 92.8 10.2 86 118-205 6-95 (96)
41 cd04978 Ig4_L1-NrCAM_like Four 99.7 9.3E-16 2E-20 89.5 9.6 75 127-205 1-75 (76)
42 cd05866 Ig1_NCAM-2 First immun 99.7 1.2E-15 2.5E-20 91.6 10.0 86 117-205 5-91 (92)
43 cd05724 Ig2_Robo Second immuno 99.7 1.2E-15 2.6E-20 91.2 10.1 82 119-204 3-85 (86)
44 cd05748 Ig_Titin_like Immunogl 99.7 1.1E-15 2.5E-20 88.6 9.6 74 129-205 1-74 (74)
45 cd05760 Ig2_PTK7 Second immuno 99.7 1.4E-15 3E-20 88.7 9.5 73 130-206 1-73 (77)
46 cd05848 Ig1_Contactin-5 First 99.7 2.5E-15 5.3E-20 91.1 10.7 87 113-203 2-92 (94)
47 cd05722 Ig1_Neogenin First imm 99.7 1.5E-15 3.2E-20 92.5 9.8 86 117-205 4-95 (95)
48 cd05850 Ig1_Contactin-2 First 99.7 3E-15 6.5E-20 90.7 11.0 87 113-203 2-92 (94)
49 cd05891 Ig_M-protein_C C-termi 99.7 2.6E-15 5.7E-20 90.6 10.6 84 118-204 7-91 (92)
50 cd05857 Ig2_FGFR Second immuno 99.7 1.6E-15 3.5E-20 90.5 9.6 81 122-205 4-85 (85)
51 cd05744 Ig_Myotilin_C_like Imm 99.7 2E-15 4.3E-20 87.6 9.4 74 130-205 1-75 (75)
52 cd05746 Ig4_Peroxidasin Fourth 99.6 1.2E-15 2.6E-20 87.1 7.8 68 130-203 1-68 (69)
53 cd07693 Ig1_Robo First immunog 99.6 4.8E-15 1E-19 91.2 11.0 93 113-205 2-99 (100)
54 cd05876 Ig3_L1-CAM Third immun 99.6 2.4E-15 5.1E-20 86.4 8.0 70 130-205 1-70 (71)
55 cd05854 Ig6_Contactin-2 Sixth 99.6 6.5E-15 1.4E-19 87.4 10.1 80 128-208 1-84 (85)
56 cd05726 Ig4_Robo Fhird immunog 99.6 3.7E-15 7.9E-20 89.8 9.1 78 127-208 1-84 (90)
57 cd05864 Ig2_VEGFR-2 Second imm 99.6 2.9E-15 6.4E-20 85.2 8.1 69 130-206 1-69 (70)
58 cd05758 Ig5_KIRREL3-like Fifth 99.6 8.4E-15 1.8E-19 89.6 10.6 89 113-203 3-97 (98)
59 cd05853 Ig6_Contactin-4 Sixth 99.6 4.9E-15 1.1E-19 87.2 8.9 81 128-209 1-85 (85)
60 cd05849 Ig1_Contactin-1 First 99.6 6.9E-15 1.5E-19 88.8 9.7 86 113-203 2-91 (93)
61 cd04976 Ig2_VEGFR Second immun 99.6 7.3E-15 1.6E-19 84.2 8.8 70 130-206 1-70 (71)
62 cd05773 Ig8_hNephrin_like Eigh 99.6 1.9E-14 4.2E-19 89.5 11.4 82 126-209 22-108 (109)
63 cd05725 Ig3_Robo Third immunog 99.6 4.1E-15 8.8E-20 85.0 7.5 69 130-205 1-69 (69)
64 cd05763 Ig_1 Subgroup of the i 99.6 5.9E-15 1.3E-19 85.8 8.3 73 130-205 1-74 (75)
65 cd05736 Ig2_Follistatin_like S 99.6 1.3E-14 2.8E-19 84.5 9.7 75 130-207 1-75 (76)
66 cd05749 Ig2_Tyro3_like Second 99.6 1.3E-14 2.7E-19 85.0 9.5 77 117-203 3-80 (81)
67 cd04974 Ig3_FGFR Third immunog 99.6 1.1E-14 2.5E-19 87.5 9.3 79 127-206 1-90 (90)
68 cd04973 Ig1_FGFR First immunog 99.6 1.6E-14 3.5E-19 84.7 9.1 73 120-199 2-74 (79)
69 cd05858 Ig3_FGFR-2 Third immun 99.6 1.7E-14 3.8E-19 86.8 9.4 78 127-205 1-89 (90)
70 cd04970 Ig6_Contactin_like Six 99.6 1.4E-14 2.9E-19 86.3 8.8 81 128-209 1-85 (85)
71 cd05855 Ig_TrkB_d5 Fifth domai 99.6 1.9E-14 4.1E-19 83.4 9.0 72 131-203 2-76 (79)
72 cd04977 Ig1_NCAM-1_like First 99.6 2.8E-14 6.1E-19 86.1 10.0 84 117-203 5-90 (92)
73 cd05733 Ig6_L1-CAM_like Sixth 99.6 1.6E-14 3.4E-19 84.3 8.4 71 130-202 1-75 (77)
74 cd05764 Ig_2 Subgroup of the i 99.6 2E-14 4.3E-19 83.3 8.7 73 127-205 1-74 (74)
75 cd04971 Ig_TrKABC_d5 Fifth dom 99.6 2.8E-14 6.1E-19 83.7 9.3 73 131-204 2-79 (81)
76 cd05731 Ig3_L1-CAM_like Third 99.6 1.6E-14 3.4E-19 83.1 8.2 71 130-206 1-71 (71)
77 cd05856 Ig2_FGFRL1-like Second 99.6 1.9E-14 4E-19 85.3 8.6 77 123-204 5-81 (82)
78 cd05874 Ig6_NrCAM Sixth immuno 99.6 2.2E-14 4.9E-19 83.5 8.7 71 130-202 1-75 (77)
79 cd05875 Ig6_hNeurofascin_like 99.6 2.6E-14 5.6E-19 83.2 8.9 70 130-201 1-74 (77)
80 cd05898 Ig5_KIRREL3 Fifth immu 99.6 5.9E-14 1.3E-18 84.7 10.1 90 112-203 2-97 (98)
81 cd05756 Ig1_IL1R_like First im 99.6 2E-14 4.4E-19 86.8 7.9 80 121-205 8-94 (94)
82 cd05739 Ig3_RPTP_IIa_LAR_like 99.6 5.9E-14 1.3E-18 79.9 9.1 68 127-203 1-68 (69)
83 cd05734 Ig7_DSCAM Seventh immu 99.6 3.8E-14 8.3E-19 83.2 7.9 72 130-204 1-78 (79)
84 cd05765 Ig_3 Subgroup of the i 99.5 9.4E-14 2E-18 82.0 8.8 75 127-205 1-81 (81)
85 cd04967 Ig1_Contactin First Ig 99.5 1.9E-13 4E-18 82.5 9.9 83 113-199 2-88 (91)
86 cd07702 Ig2_VEGFR-1 Second imm 99.5 1.4E-13 2.9E-18 78.5 8.5 64 130-198 1-64 (72)
87 cd05750 Ig_Pro_neuregulin Immu 99.5 1.4E-13 3.1E-18 80.0 7.9 70 130-199 1-72 (75)
88 cd05752 Ig1_FcgammaR_like Frst 99.5 1.8E-13 3.9E-18 79.6 7.9 66 114-192 2-68 (78)
89 cd05742 Ig1_VEGFR_like First i 99.5 3.4E-13 7.4E-18 80.1 7.7 78 127-205 1-83 (84)
90 cd05895 Ig_Pro_neuregulin-1 Im 99.4 1E-12 2.2E-17 76.5 8.0 70 130-199 1-73 (76)
91 cd05754 Ig3_Perlecan_like Thir 99.4 1E-12 2.2E-17 78.2 7.9 77 118-203 7-84 (85)
92 cd04979 Ig_Semaphorin_C Immuno 99.4 1.8E-12 3.9E-17 77.8 9.0 83 119-206 3-87 (89)
93 cd05873 Ig_Sema4D_like Immunog 99.4 3.2E-12 6.9E-17 75.5 9.6 69 118-192 2-70 (87)
94 cd05861 Ig1_PDGFR-alphabeta Fr 99.4 3.1E-12 6.6E-17 75.8 8.8 68 127-194 1-70 (84)
95 cd05729 Ig2_FGFR_like Second i 99.4 4.9E-12 1.1E-16 75.3 9.7 80 122-204 4-84 (85)
96 cd05882 Ig1_Necl-1 First (N-te 99.4 8.5E-12 1.9E-16 75.4 9.5 72 120-191 5-83 (95)
97 cd05753 Ig2_FcgammaR_like Seco 99.4 4E-12 8.8E-17 75.0 7.4 73 122-204 9-82 (83)
98 cd05757 Ig2_IL1R_like Second i 99.4 7.6E-12 1.7E-16 75.1 8.1 78 122-206 5-87 (92)
99 cd05762 Ig8_MLCK Eighth immuno 99.3 1.9E-11 4.1E-16 74.5 9.8 50 30-81 1-50 (98)
100 cd05727 Ig2_Contactin-2-like S 99.3 7.9E-12 1.7E-16 74.9 7.4 72 122-196 13-86 (96)
101 cd07701 Ig1_Necl-3 First (N-te 99.3 2.7E-11 5.8E-16 73.4 9.6 75 119-193 4-85 (95)
102 cd05845 Ig2_L1-CAM_like Second 99.3 1.9E-11 4.1E-16 73.2 7.4 74 119-196 10-85 (95)
103 cd07690 Ig1_CD4 First immunogl 99.3 2.7E-11 5.8E-16 72.8 7.8 74 123-196 3-91 (94)
104 cd05851 Ig3_Contactin-1 Third 99.3 2.4E-11 5.2E-16 72.7 6.7 67 29-95 1-74 (88)
105 cd05862 Ig1_VEGFR First immuno 99.2 1.2E-10 2.6E-15 69.2 8.7 80 127-207 1-86 (86)
106 smart00408 IGc2 Immunoglobulin 99.2 1.1E-10 2.4E-15 65.0 8.1 63 126-194 1-63 (63)
107 cd05860 Ig4_SCFR Fourth immuno 99.2 4E-10 8.7E-15 67.7 10.2 85 121-206 12-100 (101)
108 cd05749 Ig2_Tyro3_like Second 99.2 7.8E-11 1.7E-15 69.0 6.9 64 33-96 2-69 (81)
109 smart00410 IG_like Immunoglobu 99.2 5.9E-10 1.3E-14 66.0 10.8 81 122-205 4-85 (86)
110 smart00409 IG Immunoglobulin. 99.2 5.9E-10 1.3E-14 66.0 10.8 81 122-205 4-85 (86)
111 PF13895 Ig_2: Immunoglobulin 99.2 1.3E-10 2.8E-15 68.2 7.7 71 122-204 9-79 (80)
112 cd05871 Ig_Semaphorin_classIII 99.2 3.6E-10 7.8E-15 67.8 8.5 79 122-206 6-89 (91)
113 cd05747 Ig5_Titin_like M5, fif 99.2 4E-10 8.7E-15 68.0 8.6 73 28-103 2-74 (92)
114 cd05885 Ig2_Necl-4 Second immu 99.1 2.7E-10 6E-15 65.9 6.9 65 130-197 2-70 (80)
115 cd05717 Ig1_Necl-1-3_like Firs 99.1 1E-09 2.2E-14 66.7 9.6 74 120-193 5-85 (95)
116 cd05897 Ig2_IL1R2_like Second 99.1 6E-10 1.3E-14 66.9 8.2 71 123-196 6-81 (95)
117 cd07693 Ig1_Robo First immunog 99.1 7E-10 1.5E-14 68.0 8.6 44 29-72 1-44 (100)
118 PF00047 ig: Immunoglobulin do 99.1 1.4E-10 3.1E-15 65.0 4.7 61 127-189 1-64 (64)
119 PHA02826 IL-1 receptor-like pr 99.1 9.9E-10 2.1E-14 77.0 9.7 90 3-104 110-204 (227)
120 cd05752 Ig1_FcgammaR_like Frst 99.1 9.7E-10 2.1E-14 63.9 7.8 65 30-95 1-67 (78)
121 cd05848 Ig1_Contactin-5 First 99.1 8.3E-10 1.8E-14 66.8 7.7 44 30-73 2-48 (94)
122 cd05759 Ig2_KIRREL3-like Secon 99.1 2.5E-09 5.5E-14 63.0 9.0 74 129-204 1-79 (82)
123 cd05850 Ig1_Contactin-2 First 99.1 1.8E-09 3.9E-14 65.4 8.3 66 30-95 2-80 (94)
124 cd04968 Ig3_Contactin_like Thi 99.1 9.7E-10 2.1E-14 65.8 6.8 67 29-95 1-74 (88)
125 cd05728 Ig4_Contactin-2-like F 99.0 7.2E-10 1.6E-14 65.8 6.1 42 32-73 2-43 (85)
126 cd04975 Ig4_SCFR_like Fourth i 99.0 2.1E-09 4.5E-14 65.7 7.4 37 37-73 11-48 (101)
127 PF07679 I-set: Immunoglobulin 99.0 2.1E-09 4.5E-14 64.6 7.2 72 30-104 1-72 (90)
128 cd05737 Ig_Myomesin_like_C C-t 99.0 2.7E-09 5.8E-14 64.4 7.6 67 35-103 7-73 (92)
129 cd05730 Ig3_NCAM-1_like Third 99.0 3.7E-09 8.1E-14 64.2 7.6 45 29-73 1-47 (95)
130 cd05849 Ig1_Contactin-1 First 99.0 7.9E-09 1.7E-13 62.3 8.6 43 30-72 2-47 (93)
131 cd05774 Ig_CEACAM_D1 First imm 99.0 7.2E-09 1.5E-13 63.7 8.0 71 122-195 8-95 (105)
132 cd05722 Ig1_Neogenin First imm 98.9 7E-09 1.5E-13 63.0 7.6 42 32-73 2-43 (95)
133 cd04983 IgV_TCR_alpha_like Imm 98.9 1.3E-08 2.9E-13 63.4 9.0 76 118-193 4-93 (109)
134 cd05872 Ig_Sema4B_like Immunog 98.9 1.3E-08 2.9E-13 59.7 8.0 63 121-190 5-67 (85)
135 cd05739 Ig3_RPTP_IIa_LAR_like 98.9 5.5E-09 1.2E-13 59.3 6.3 54 44-97 1-59 (69)
136 cd05881 Ig1_Necl-2 First (N-te 98.9 1.9E-08 4.2E-13 60.4 8.9 71 121-191 6-83 (95)
137 cd05771 IgC_Tapasin_R Tapasin- 98.9 1.9E-08 4E-13 65.6 9.5 66 3-69 13-80 (139)
138 cd05900 Ig_Aggrecan Immunoglob 98.9 3E-08 6.4E-13 61.7 9.9 81 126-207 1-110 (112)
139 cd05869 Ig5_NCAM-1 Fifth immun 98.9 7.7E-09 1.7E-13 63.0 7.2 45 28-72 1-45 (97)
140 cd04980 IgV_L_kappa Immunoglob 98.9 2.1E-08 4.6E-13 62.1 9.2 75 118-192 6-93 (106)
141 cd05877 Ig_LP_like Immunoglobu 98.9 3.6E-08 7.7E-13 61.1 10.2 81 126-207 1-104 (106)
142 cd04973 Ig1_FGFR First immunog 98.9 1E-08 2.2E-13 59.9 7.3 57 36-95 1-66 (79)
143 cd05745 Ig3_Peroxidasin Third 98.9 3.6E-09 7.8E-14 61.1 5.2 31 43-73 1-31 (74)
144 cd05852 Ig5_Contactin-1 Fifth 98.9 3.7E-09 8E-14 60.7 5.2 50 44-95 1-60 (73)
145 cd05751 Ig1_LILRB1_like First 98.9 1.1E-08 2.4E-13 61.5 7.4 86 113-205 3-90 (91)
146 cd05859 Ig4_PDGFR-alpha Fourth 98.9 8.6E-09 1.9E-13 63.1 7.0 36 38-73 12-47 (101)
147 cd05896 Ig1_IL1RAPL-1_like Fir 98.9 1.8E-08 3.8E-13 60.9 7.4 76 122-199 10-99 (104)
148 cd05868 Ig4_NrCAM Fourth immun 98.9 7.1E-09 1.5E-13 60.1 5.6 29 44-72 1-29 (76)
149 cd05865 Ig1_NCAM-1 First immun 98.9 2.4E-08 5.3E-13 60.5 8.0 73 32-105 3-77 (96)
150 PF13927 Ig_3: Immunoglobulin 98.9 2.5E-09 5.3E-14 61.8 3.6 73 113-191 2-75 (75)
151 cd05870 Ig5_NCAM-2 Fifth immun 98.9 4.9E-08 1.1E-12 59.6 9.3 37 29-66 2-38 (98)
152 cd05894 Ig_C5_MyBP-C C5 immuno 98.9 3.1E-08 6.7E-13 58.8 8.2 65 38-104 4-68 (86)
153 cd05714 Ig_CSPGs_LP Immunoglob 98.9 5.4E-08 1.2E-12 60.3 9.6 81 126-207 1-104 (106)
154 cd05879 Ig_P0 Immunoglobulin ( 98.9 1.2E-07 2.7E-12 59.3 11.1 84 121-205 7-114 (116)
155 cd05899 IgV_TCR_beta Immunoglo 98.9 2.7E-08 5.8E-13 62.1 8.0 74 118-192 4-94 (110)
156 cd05758 Ig5_KIRREL3-like Fifth 98.8 3.7E-08 7.9E-13 60.2 8.0 53 29-82 2-55 (98)
157 cd05741 Ig_CEACAM_D1_like Firs 98.8 2.9E-08 6.2E-13 59.9 7.4 74 127-203 1-90 (92)
158 cd05740 Ig_CEACAM_D4 Fourth im 98.8 2.8E-08 6.1E-13 59.6 7.2 37 35-72 9-45 (91)
159 cd04972 Ig_TrkABC_d4 Fourth do 98.8 3.9E-08 8.6E-13 59.0 7.9 39 34-72 5-43 (90)
160 cd05863 Ig2_VEGFR-3 Second imm 98.8 7E-09 1.5E-13 58.3 4.2 50 47-96 1-53 (67)
161 cd05724 Ig2_Robo Second immuno 98.8 4.6E-08 1E-12 58.2 7.7 38 35-72 2-40 (86)
162 cd05771 IgC_Tapasin_R Tapasin- 98.8 1.1E-07 2.5E-12 61.9 10.1 107 84-193 11-131 (139)
163 cd05735 Ig8_DSCAM Eight immuno 98.8 5.6E-08 1.2E-12 58.0 7.8 29 44-72 1-29 (88)
164 cd05867 Ig4_L1-CAM_like Fourth 98.8 2.7E-08 5.8E-13 57.7 6.3 30 44-73 1-30 (76)
165 cd05878 Ig_Aggrecan_like Immun 98.8 2E-07 4.3E-12 58.1 10.1 80 127-207 2-108 (110)
166 cd04967 Ig1_Contactin First Ig 98.8 5.7E-08 1.2E-12 58.4 7.5 43 30-72 2-47 (91)
167 cd05723 Ig4_Neogenin Fourth im 98.8 2.4E-08 5.3E-13 57.1 5.4 48 46-95 1-58 (71)
168 cd04984 IgV_L_lambda Immunoglo 98.8 1E-07 2.2E-12 58.2 8.4 70 123-192 2-85 (98)
169 cd05775 Ig_SLAM-CD84_like_N N- 98.8 5.2E-08 1.1E-12 59.3 6.9 78 126-205 3-96 (97)
170 cd05732 Ig5_NCAM-1_like Fifth 98.8 7.3E-08 1.6E-12 58.6 7.6 43 29-72 2-44 (96)
171 cd05891 Ig_M-protein_C C-termi 98.7 8.3E-08 1.8E-12 57.8 7.6 39 35-73 7-45 (92)
172 cd00099 IgV Immunoglobulin var 98.7 9.3E-08 2E-12 59.1 7.8 72 123-194 2-91 (105)
173 cd05866 Ig1_NCAM-2 First immun 98.7 9.8E-08 2.1E-12 57.3 7.4 70 32-105 3-73 (92)
174 cd05718 Ig1_PVR_like First imm 98.7 2E-07 4.2E-12 56.9 8.9 77 128-205 1-97 (98)
175 cd05773 Ig8_hNephrin_like Eigh 98.7 2.8E-07 6E-12 57.3 9.6 45 28-72 3-51 (109)
176 cd05713 Ig_MOG_like Immunoglob 98.7 2.4E-07 5.1E-12 56.8 9.1 78 127-205 1-99 (100)
177 cd05892 Ig_Myotilin_C C-termin 98.7 8.6E-08 1.9E-12 55.3 6.5 58 47-105 1-58 (75)
178 KOG3515|consensus 98.7 2E-07 4.4E-12 74.6 10.7 151 38-193 16-186 (741)
179 cd04978 Ig4_L1-NrCAM_like Four 98.7 1E-07 2.3E-12 55.2 6.3 30 44-73 1-30 (76)
180 cd05743 Ig_Perlecan_D2_like Im 98.7 1.3E-07 2.7E-12 55.2 6.5 57 44-103 1-57 (78)
181 cd05755 Ig2_ICAM-1_like Second 98.7 2E-07 4.2E-12 56.5 7.4 79 118-196 7-88 (100)
182 cd04969 Ig5_Contactin_like Fif 98.7 7.4E-08 1.6E-12 55.4 5.4 30 44-73 1-30 (73)
183 cd05738 Ig2_RPTP_IIa_LAR_like 98.7 6.8E-08 1.5E-12 55.7 5.2 34 47-80 1-34 (74)
184 cd05873 Ig_Sema4D_like Immunog 98.7 1.5E-07 3.3E-12 55.7 6.6 64 35-105 2-65 (87)
185 cd05883 Ig2_Necl-2 Second immu 98.7 5.9E-07 1.3E-11 52.2 8.9 64 130-194 2-68 (82)
186 cd05880 Ig_EVA1 Immunoglobulin 98.7 7.2E-07 1.6E-11 56.0 10.1 77 119-195 5-104 (115)
187 cd04977 Ig1_NCAM-1_like First 98.6 3E-07 6.5E-12 55.4 7.7 70 32-104 3-73 (92)
188 cd04982 IgV_TCR_gamma Immunogl 98.6 3.9E-07 8.6E-12 57.4 8.5 74 118-191 4-98 (116)
189 cd05733 Ig6_L1-CAM_like Sixth 98.6 1.3E-07 2.8E-12 55.0 5.7 27 47-73 1-27 (77)
190 cd05746 Ig4_Peroxidasin Fourth 98.6 7E-08 1.5E-12 54.8 4.5 27 47-73 1-27 (69)
191 cd05857 Ig2_FGFR Second immuno 98.6 3.3E-07 7.2E-12 54.3 7.6 35 39-73 4-38 (85)
192 cd05756 Ig1_IL1R_like First im 98.6 3.4E-07 7.4E-12 55.3 7.2 34 37-70 7-45 (94)
193 cd05715 Ig_P0-like Immunoglobu 98.6 1.2E-06 2.7E-11 55.1 10.1 77 119-195 5-105 (116)
194 cd05888 Ig1_Nectin-4_like Frst 98.6 1.3E-06 2.8E-11 53.5 9.4 76 129-205 2-99 (100)
195 cd05748 Ig_Titin_like Immunogl 98.6 4.8E-07 1E-11 52.1 7.2 55 46-103 1-55 (74)
196 cd05902 Ig_Neurocan Immunoglob 98.6 1.2E-06 2.6E-11 54.3 9.2 79 127-206 2-107 (110)
197 cd07706 IgV_TCR_delta Immunogl 98.6 1.4E-06 3.1E-11 54.8 9.7 74 118-191 5-93 (116)
198 cd05760 Ig2_PTK7 Second immuno 98.6 2.2E-07 4.7E-12 54.0 5.5 27 47-73 1-27 (77)
199 cd05893 Ig_Palladin_C C-termin 98.6 3.2E-07 7E-12 52.9 6.1 55 47-103 1-56 (75)
200 cd05875 Ig6_hNeurofascin_like 98.6 2.7E-07 5.8E-12 53.6 5.7 25 47-71 1-25 (77)
201 cd05761 Ig2_Necl-1-4_like Seco 98.6 1.5E-06 3.2E-11 51.1 8.8 65 130-196 2-71 (82)
202 cd05864 Ig2_VEGFR-2 Second imm 98.6 1.3E-07 2.9E-12 53.6 4.2 49 47-95 1-55 (70)
203 cd07702 Ig2_VEGFR-1 Second imm 98.6 1.9E-07 4.1E-12 53.2 4.8 27 47-73 1-27 (72)
204 cd05874 Ig6_NrCAM Sixth immuno 98.5 3E-07 6.6E-12 53.3 5.8 26 47-72 1-26 (77)
205 cd05744 Ig_Myotilin_C_like Imm 98.5 4.8E-07 1.1E-11 52.2 6.6 57 47-104 1-57 (75)
206 cd05886 Ig1_Nectin-1_like Firs 98.5 2.5E-06 5.5E-11 51.8 10.0 76 129-205 2-98 (99)
207 cd04976 Ig2_VEGFR Second immun 98.5 1.9E-07 4.1E-12 53.3 4.7 27 47-73 1-27 (71)
208 PF07686 V-set: Immunoglobulin 98.5 5.1E-07 1.1E-11 56.5 7.1 74 119-192 8-101 (114)
209 cd05856 Ig2_FGFRL1-like Second 98.5 4.5E-07 9.7E-12 53.3 6.4 56 40-95 5-69 (82)
210 cd00098 IgC Immunoglobulin Con 98.5 5.5E-07 1.2E-11 54.6 6.8 71 125-195 11-87 (95)
211 cd05711 Ig_FcalphaRI Immunoglo 98.5 9.6E-07 2.1E-11 53.3 7.5 66 122-190 10-75 (94)
212 KOG3515|consensus 98.5 8.7E-07 1.9E-11 71.1 9.2 186 4-191 72-286 (741)
213 cd07705 Ig2_Necl-1 Second immu 98.5 3.2E-06 6.9E-11 49.7 9.2 66 130-196 2-72 (83)
214 cd05726 Ig4_Robo Fhird immunog 98.5 9.4E-07 2E-11 53.0 7.1 26 44-69 1-26 (90)
215 cd04974 Ig3_FGFR Third immunog 98.5 8.4E-07 1.8E-11 53.2 6.8 24 44-67 1-24 (90)
216 cd05846 Ig1_MRC-OX-2_like Firs 98.5 2.4E-06 5.2E-11 52.0 8.8 78 127-205 1-96 (97)
217 cd05764 Ig_2 Subgroup of the i 98.5 8.5E-07 1.8E-11 51.1 6.3 29 44-72 1-30 (74)
218 cd04971 Ig_TrKABC_d5 Fifth dom 98.5 7.6E-07 1.6E-11 52.2 6.1 26 48-73 2-27 (81)
219 cd05855 Ig_TrkB_d5 Fifth domai 98.5 3.8E-07 8.3E-12 52.9 4.7 26 48-73 2-27 (79)
220 cd05763 Ig_1 Subgroup of the i 98.5 5.3E-07 1.1E-11 52.1 5.2 23 47-69 1-23 (75)
221 cd05901 Ig_Versican Immunoglob 98.5 6.4E-06 1.4E-10 51.3 10.2 80 127-207 2-115 (117)
222 cd07700 IgV_CD8_beta Immunoglo 98.5 2.1E-06 4.5E-11 53.2 8.2 69 123-191 2-93 (107)
223 cd04979 Ig_Semaphorin_C Immuno 98.5 9E-07 1.9E-11 52.9 6.3 37 35-72 2-38 (89)
224 cd07701 Ig1_Necl-3 First (N-te 98.4 1.5E-06 3.1E-11 52.7 7.1 70 36-105 4-79 (95)
225 cd05716 Ig_pIgR Immunoglobulin 98.4 2.7E-06 5.7E-11 51.9 8.4 71 123-193 3-87 (98)
226 cd05884 Ig2_Necl-3 Second immu 98.4 2.9E-06 6.2E-11 49.9 7.9 65 130-195 2-71 (83)
227 cd05876 Ig3_L1-CAM Third immun 98.4 4.8E-07 1E-11 51.6 4.5 49 47-95 1-57 (71)
228 cd05725 Ig3_Robo Third immunog 98.4 5.9E-07 1.3E-11 50.9 4.7 26 47-72 1-26 (69)
229 cd05887 Ig1_Nectin-3_like Firs 98.4 6.5E-06 1.4E-10 49.6 9.1 77 128-205 1-95 (96)
230 cd05753 Ig2_FcgammaR_like Seco 98.4 2.2E-06 4.8E-11 50.5 7.0 60 36-95 6-69 (83)
231 cd05898 Ig5_KIRREL3 Fifth immu 98.4 3.3E-06 7.1E-11 51.1 7.6 54 29-83 2-56 (98)
232 cd05885 Ig2_Necl-4 Second immu 98.4 2.4E-06 5.3E-11 49.5 6.2 27 46-72 1-28 (80)
233 cd05754 Ig3_Perlecan_like Thir 98.3 2.9E-06 6.3E-11 50.2 6.7 62 34-95 6-73 (85)
234 PHA02987 Ig domain OX-2-like p 98.3 9.7E-06 2.1E-10 54.1 9.6 86 122-208 25-124 (189)
235 cd05858 Ig3_FGFR-2 Third immun 98.3 2.1E-06 4.6E-11 51.4 6.0 23 44-66 1-23 (90)
236 cd05727 Ig2_Contactin-2-like S 98.3 3.2E-06 7E-11 50.8 6.6 34 37-70 11-45 (96)
237 PF13895 Ig_2: Immunoglobulin 98.3 1.3E-06 2.9E-11 50.9 4.7 63 30-95 2-66 (80)
238 cd05720 Ig_CD8_alpha Immunoglo 98.3 3.6E-06 7.8E-11 51.9 6.7 68 124-191 3-90 (104)
239 cd07694 Ig2_CD4 Second immunog 98.3 9.9E-06 2.1E-10 47.2 7.9 62 123-192 10-73 (88)
240 cd04970 Ig6_Contactin_like Six 98.3 3.6E-06 7.8E-11 49.8 6.4 28 45-72 1-30 (85)
241 cd05882 Ig1_Necl-1 First (N-te 98.3 9.2E-06 2E-10 49.1 8.1 70 36-105 4-79 (95)
242 cd05731 Ig3_L1-CAM_like Third 98.3 1.8E-06 3.8E-11 49.2 4.5 26 47-72 1-26 (71)
243 cd05845 Ig2_L1-CAM_like Second 98.3 4.1E-06 8.9E-11 50.3 5.8 46 35-81 9-55 (95)
244 cd05712 Ig_Siglec_N Immunoglob 98.2 1.7E-05 3.6E-10 50.2 8.8 74 119-192 6-102 (119)
245 cd05736 Ig2_Follistatin_like S 98.2 6.4E-06 1.4E-10 47.6 6.2 27 47-73 1-27 (76)
246 cd05729 Ig2_FGFR_like Second i 98.2 1.7E-05 3.7E-10 46.7 8.0 34 39-72 4-37 (85)
247 cd05757 Ig2_IL1R_like Second i 98.2 6.9E-06 1.5E-10 49.3 6.1 58 38-95 4-73 (92)
248 cd07698 IgC_MHC_I_alpha3 Class 98.2 1.9E-05 4E-10 47.6 7.7 68 127-194 14-84 (93)
249 cd05750 Ig_Pro_neuregulin Immu 98.2 1.2E-05 2.5E-10 46.3 6.5 27 47-73 1-28 (75)
250 cd05854 Ig6_Contactin-2 Sixth 98.2 1.3E-05 2.9E-10 47.3 6.8 28 45-72 1-30 (85)
251 smart00408 IGc2 Immunoglobulin 98.2 1.7E-05 3.7E-10 43.5 7.0 29 43-71 1-29 (63)
252 cd05765 Ig_3 Subgroup of the i 98.2 1.2E-05 2.7E-10 47.0 6.3 24 44-67 1-24 (81)
253 cd04981 IgV_H Immunoglobulin ( 98.1 2.9E-05 6.4E-10 48.9 8.4 73 119-191 4-97 (117)
254 PF08205 C2-set_2: CD80-like C 98.1 1.3E-05 2.7E-10 47.9 5.7 67 127-194 14-85 (89)
255 cd05734 Ig7_DSCAM Seventh immu 98.1 7.6E-06 1.6E-10 47.7 4.4 21 47-67 1-21 (79)
256 KOG1480|consensus 98.1 2.2E-06 4.8E-11 68.1 2.6 83 118-205 135-218 (909)
257 smart00407 IGc1 Immunoglobulin 98.1 7.2E-05 1.6E-09 43.1 8.4 64 130-193 2-71 (75)
258 cd05853 Ig6_Contactin-4 Sixth 98.0 3.3E-05 7.1E-10 45.5 6.6 28 45-72 1-30 (85)
259 cd05772 IgC_SIRP Signal-regula 98.0 0.00013 2.9E-09 45.3 9.7 69 124-193 18-92 (111)
260 cd05872 Ig_Sema4B_like Immunog 98.0 2.4E-05 5.2E-10 46.0 6.0 61 37-105 4-64 (85)
261 cd05717 Ig1_Necl-1-3_like Firs 98.0 4.4E-05 9.4E-10 46.2 7.3 31 36-66 4-34 (95)
262 cd00096 Ig Immunoglobulin doma 98.0 3.4E-05 7.3E-10 43.2 6.6 64 130-193 1-66 (74)
263 cd05847 IgC_CH2_IgE CH2 domain 98.0 3.6E-05 7.7E-10 46.4 6.7 70 126-195 13-88 (94)
264 cd07699 IgC_L Immunoglobulin C 98.0 2.3E-05 5.1E-10 47.8 5.8 70 124-193 14-89 (100)
265 cd05896 Ig1_IL1RAPL-1_like Fir 98.0 6.4E-05 1.4E-09 45.6 7.3 66 37-102 8-98 (104)
266 cd05770 IgC_beta2m Class I maj 98.0 6.6E-05 1.4E-09 45.0 7.3 67 126-192 14-82 (93)
267 cd05889 Ig1_DNAM-1_like First 98.0 0.00018 3.8E-09 43.5 9.1 71 129-199 2-90 (96)
268 cd07690 Ig1_CD4 First immunogl 98.0 5.7E-05 1.2E-09 45.5 6.6 31 39-69 2-32 (94)
269 cd05719 Ig2_PVR_like Second im 97.9 0.00014 3.1E-09 43.8 8.1 66 128-196 16-85 (95)
270 PHA03376 BARF1; Provisional 97.9 0.0019 4.1E-08 43.4 13.7 114 38-152 20-164 (221)
271 smart00406 IGv Immunoglobulin 97.9 7E-05 1.5E-09 43.6 6.6 60 129-188 1-80 (81)
272 cd05767 IgC_MHC_II_alpha Class 97.9 7.9E-05 1.7E-09 44.8 6.6 64 126-192 14-83 (94)
273 cd07692 Ig_CD3_epsilon Immunog 97.9 0.00012 2.7E-09 40.1 6.5 60 125-207 5-64 (65)
274 cd05881 Ig1_Necl-2 First (N-te 97.9 0.00015 3.3E-09 43.6 7.5 69 37-105 5-79 (95)
275 PHA03376 BARF1; Provisional 97.9 0.00018 3.9E-09 48.1 8.3 72 121-192 20-109 (221)
276 cd05766 IgC_MHC_II_beta Class 97.9 0.00019 4.2E-09 43.2 7.9 66 126-194 13-84 (94)
277 cd07696 IgC_CH3 CH3 domain (th 97.9 9.6E-05 2.1E-09 44.7 6.5 72 122-193 9-86 (96)
278 cd05755 Ig2_ICAM-1_like Second 97.9 8.6E-05 1.9E-09 45.0 6.2 42 31-72 3-47 (100)
279 cd05742 Ig1_VEGFR_like First i 97.9 2.4E-05 5.3E-10 46.1 3.8 27 44-70 1-29 (84)
280 cd05897 Ig2_IL1R2_like Second 97.8 9.6E-05 2.1E-09 44.5 6.0 36 38-73 4-44 (95)
281 cd05899 IgV_TCR_beta Immunoglo 97.8 0.00014 2.9E-09 45.3 6.9 34 33-67 2-35 (110)
282 cd05895 Ig_Pro_neuregulin-1 Im 97.8 0.0002 4.4E-09 41.2 6.6 26 47-72 1-27 (76)
283 cd05768 IgC_CH4 CH4 domain (fo 97.7 9.5E-05 2.1E-09 45.3 5.2 69 125-193 14-91 (102)
284 cd07703 Ig2_Nectin-2_like Seco 97.7 0.0004 8.6E-09 41.9 7.8 63 129-194 17-83 (95)
285 cd05751 Ig1_LILRB1_like First 97.7 0.00017 3.6E-09 43.3 6.2 65 29-95 2-74 (91)
286 smart00409 IG Immunoglobulin. 97.7 0.00069 1.5E-08 39.4 8.5 44 37-82 2-46 (86)
287 smart00410 IG_like Immunoglobu 97.7 0.00069 1.5E-08 39.4 8.5 44 37-82 2-46 (86)
288 PF00047 ig: Immunoglobulin do 97.7 0.00012 2.6E-09 40.6 4.5 29 44-72 1-30 (64)
289 cd07691 Ig_CD3_gamma_delta Imm 97.7 0.00037 8E-09 38.6 6.1 49 127-191 6-54 (69)
290 cd05769 IgC_TCR_beta T cell re 97.6 0.0003 6.4E-09 44.0 6.4 73 124-196 15-95 (115)
291 cd04980 IgV_L_kappa Immunoglob 97.6 0.0006 1.3E-08 42.1 7.8 35 32-66 3-38 (106)
292 cd05871 Ig_Semaphorin_classIII 97.6 0.00025 5.5E-09 42.4 5.8 27 39-66 6-32 (91)
293 cd07704 Ig2_Nectin-3-4_like Se 97.6 0.001 2.2E-08 40.1 8.0 69 122-193 11-84 (97)
294 cd05772 IgC_SIRP Signal-regula 97.6 0.00026 5.6E-09 44.0 5.5 35 38-72 15-51 (111)
295 PF07654 C1-set: Immunoglobuli 97.6 0.00037 7.9E-09 41.0 5.8 66 126-194 7-78 (83)
296 cd05861 Ig1_PDGFR-alphabeta Fr 97.6 0.00024 5.3E-09 41.8 5.0 26 44-69 1-26 (84)
297 cd05883 Ig2_Necl-2 Second immu 97.5 0.00055 1.2E-08 39.9 6.1 28 46-73 1-29 (82)
298 cd07705 Ig2_Necl-1 Second immu 97.5 0.00073 1.6E-08 39.7 6.3 27 47-73 2-29 (83)
299 cd07699 IgC_L Immunoglobulin C 97.5 0.00026 5.6E-09 43.2 4.5 44 29-72 1-47 (100)
300 cd05884 Ig2_Necl-3 Second immu 97.5 0.00065 1.4E-08 39.9 5.9 26 47-72 2-28 (83)
301 PF13927 Ig_3: Immunoglobulin 97.5 6E-05 1.3E-09 43.1 1.4 35 29-64 1-36 (75)
302 cd07697 IgC_TCR_gamma T cell r 97.5 0.0011 2.3E-08 40.1 6.9 66 124-192 13-84 (96)
303 cd05759 Ig2_KIRREL3-like Secon 97.4 0.00069 1.5E-08 39.7 5.9 27 46-72 1-28 (82)
304 cd04983 IgV_TCR_alpha_like Imm 97.4 0.00096 2.1E-08 41.3 6.9 34 34-67 3-36 (109)
305 cd05711 Ig_FcalphaRI Immunoglo 97.4 0.00065 1.4E-08 41.0 5.5 39 29-69 1-39 (94)
306 cd04985 IgC_CH1 CH1 domain (fi 97.4 0.00095 2.1E-08 40.3 6.2 67 126-193 15-87 (95)
307 cd05860 Ig4_SCFR Fourth immuno 97.4 0.0016 3.5E-08 39.4 7.0 37 37-73 11-48 (101)
308 cd04982 IgV_TCR_gamma Immunogl 97.4 0.0017 3.7E-08 40.7 7.5 33 34-66 3-37 (116)
309 cd05761 Ig2_Necl-1-4_like Seco 97.4 0.0015 3.2E-08 38.3 6.7 27 47-73 2-29 (82)
310 cd05769 IgC_TCR_beta T cell re 97.3 0.0009 2E-08 41.8 5.3 45 29-73 2-49 (115)
311 cd07698 IgC_MHC_I_alpha3 Class 97.3 0.001 2.2E-08 40.0 5.3 40 29-71 2-43 (93)
312 cd05767 IgC_MHC_II_alpha Class 97.2 0.0018 3.9E-08 39.0 6.1 43 29-72 1-45 (94)
313 cd05770 IgC_beta2m Class I maj 97.2 0.0017 3.6E-08 39.0 5.6 30 42-71 13-44 (93)
314 cd05766 IgC_MHC_II_beta Class 97.2 0.0021 4.5E-08 38.7 6.0 32 42-73 12-45 (94)
315 cd04986 IgC_CH2 CH2 domain (se 97.2 0.0011 2.4E-08 40.2 4.7 69 124-194 16-90 (99)
316 cd05721 IgV_CTLA-4 Immunoglobu 97.2 0.007 1.5E-07 37.6 8.2 71 121-191 7-95 (115)
317 PF08205 C2-set_2: CD80-like C 97.2 0.00056 1.2E-08 40.7 3.3 27 44-70 14-41 (89)
318 cd00098 IgC Immunoglobulin Con 97.1 0.0011 2.4E-08 39.9 4.5 32 42-73 11-44 (95)
319 PHA03270 envelope glycoprotein 97.1 0.031 6.7E-07 42.5 12.2 69 3-73 194-266 (466)
320 PHA03269 envelope glycoprotein 97.0 0.036 7.9E-07 42.8 12.1 44 27-72 327-373 (566)
321 cd07706 IgV_TCR_delta Immunogl 96.9 0.0071 1.5E-07 37.9 7.1 35 32-66 2-37 (116)
322 cd07692 Ig_CD3_epsilon Immunog 96.9 0.0059 1.3E-07 33.6 5.4 50 42-95 5-55 (65)
323 cd04984 IgV_L_lambda Immunoglo 96.8 0.0071 1.5E-07 36.7 6.3 27 40-66 2-30 (98)
324 PF11465 Receptor_2B4: Natural 96.8 0.0048 1E-07 37.4 5.2 46 159-206 62-107 (108)
325 PHA02633 hypothetical protein; 96.8 0.0038 8.2E-08 33.8 4.2 36 170-206 18-53 (63)
326 cd00099 IgV Immunoglobulin var 96.8 0.0061 1.3E-07 37.3 5.9 28 40-67 2-30 (105)
327 cd05862 Ig1_VEGFR First immuno 96.8 0.0066 1.4E-07 35.9 5.7 26 44-69 1-28 (86)
328 PHA03273 envelope glycoprotein 96.7 0.11 2.4E-06 40.0 12.7 67 3-72 210-281 (486)
329 smart00407 IGc1 Immunoglobulin 96.7 0.0051 1.1E-07 35.3 4.6 27 46-72 1-29 (75)
330 cd05768 IgC_CH4 CH4 domain (fo 96.7 0.0047 1E-07 37.8 4.7 37 36-72 8-46 (102)
331 cd07697 IgC_TCR_gamma T cell r 96.6 0.0071 1.5E-07 36.5 5.0 37 36-72 8-46 (96)
332 cd07689 Ig2_VCAM-1 Second immu 96.6 0.031 6.8E-07 33.7 7.6 69 124-193 12-86 (99)
333 PHA03271 envelope glycoprotein 96.4 0.19 4.1E-06 38.3 12.1 45 27-73 245-292 (490)
334 cd05847 IgC_CH2_IgE CH2 domain 96.4 0.012 2.7E-07 35.4 5.0 38 35-72 5-44 (94)
335 cd05774 Ig_CEACAM_D1 First imm 96.4 0.016 3.5E-07 35.6 5.5 33 34-66 3-35 (105)
336 cd05879 Ig_P0 Immunoglobulin ( 96.3 0.082 1.8E-06 33.2 8.7 31 35-65 4-38 (116)
337 cd07696 IgC_CH3 CH3 domain (th 96.3 0.01 2.3E-07 35.8 4.5 35 35-69 5-42 (96)
338 cd05716 Ig_pIgR Immunoglobulin 96.3 0.041 9E-07 33.2 7.0 29 39-67 2-31 (98)
339 PHA02987 Ig domain OX-2-like p 96.2 0.036 7.8E-07 37.5 7.0 30 38-67 24-54 (189)
340 cd04981 IgV_H Immunoglobulin ( 96.2 0.056 1.2E-06 34.0 7.7 32 35-66 3-36 (117)
341 PF08204 V-set_CD47: CD47 immu 96.2 0.0081 1.7E-07 38.2 3.6 79 126-206 26-120 (130)
342 KOG4597|consensus 96.1 0.01 2.2E-07 45.5 4.4 81 122-206 206-292 (560)
343 cd05712 Ig_Siglec_N Immunoglob 96.1 0.052 1.1E-06 34.2 7.0 34 34-67 4-43 (119)
344 PF07654 C1-set: Immunoglobuli 96.1 0.024 5.1E-07 33.2 5.0 31 43-73 7-39 (83)
345 PF07354 Sp38: Zona-pellucida- 95.9 0.041 9E-07 39.1 6.4 48 141-193 12-60 (271)
346 cd05846 Ig1_MRC-OX-2_like Firs 95.7 0.084 1.8E-06 31.9 6.6 23 44-66 1-24 (97)
347 cd04985 IgC_CH1 CH1 domain (fi 95.6 0.023 5.1E-07 34.2 3.8 27 43-69 15-43 (95)
348 cd05900 Ig_Aggrecan Immunoglob 95.5 0.13 2.9E-06 32.0 6.9 24 43-66 1-36 (112)
349 cd07691 Ig_CD3_gamma_delta Imm 95.4 0.096 2.1E-06 29.2 5.4 56 44-104 6-65 (69)
350 cd07704 Ig2_Nectin-3-4_like Se 95.4 0.033 7.1E-07 33.6 3.8 30 38-67 10-41 (97)
351 cd05877 Ig_LP_like Immunoglobu 95.4 0.13 2.9E-06 31.5 6.7 25 43-67 1-31 (106)
352 PF07686 V-set: Immunoglobulin 95.0 0.029 6.2E-07 34.6 3.0 35 32-66 4-39 (114)
353 cd05719 Ig2_PVR_like Second im 95.0 0.033 7.1E-07 33.6 3.0 22 45-66 16-38 (95)
354 cd05775 Ig_SLAM-CD84_like_N N- 94.9 0.13 2.7E-06 31.1 5.4 26 42-67 2-28 (97)
355 PHA03042 CD47-like protein; Pr 94.8 0.28 6.1E-06 35.3 7.6 62 127-197 31-97 (286)
356 cd07700 IgV_CD8_beta Immunoglo 94.8 0.042 9E-07 33.9 3.2 27 40-66 2-29 (107)
357 cd05720 Ig_CD8_alpha Immunoglo 94.7 0.038 8.3E-07 33.9 2.9 28 40-67 2-29 (104)
358 PHA02982 hypothetical protein; 94.6 0.27 5.9E-06 33.9 6.8 75 124-198 36-128 (251)
359 cd05718 Ig1_PVR_like First imm 94.5 0.2 4.4E-06 30.1 5.8 23 45-67 1-26 (98)
360 cd05715 Ig_P0-like Immunoglobu 94.5 0.067 1.4E-06 33.5 3.7 32 35-66 4-39 (116)
361 cd05714 Ig_CSPGs_LP Immunoglob 94.4 0.28 6E-06 30.1 6.4 25 43-67 1-31 (106)
362 cd04986 IgC_CH2 CH2 domain (se 94.3 0.06 1.3E-06 32.7 3.1 41 29-69 3-47 (99)
363 PHA03052 Hypothetical protein; 94.1 0.22 4.7E-06 27.5 4.5 36 36-71 4-42 (69)
364 cd05878 Ig_Aggrecan_like Immun 94.1 0.49 1.1E-05 29.3 6.9 24 43-66 1-34 (110)
365 cd07703 Ig2_Nectin-2_like Seco 94.0 0.058 1.3E-06 32.5 2.5 22 45-66 16-38 (95)
366 cd05741 Ig_CEACAM_D1_like Firs 94.0 0.066 1.4E-06 31.8 2.8 25 44-68 1-25 (92)
367 cd05880 Ig_EVA1 Immunoglobulin 93.9 0.077 1.7E-06 33.3 3.1 31 35-65 4-38 (115)
368 cd07689 Ig2_VCAM-1 Second immu 93.5 0.12 2.6E-06 31.2 3.2 32 41-72 12-46 (99)
369 PHA03052 Hypothetical protein; 92.9 0.72 1.6E-05 25.5 5.3 37 120-156 5-44 (69)
370 PF06328 Lep_receptor_Ig: Ig-l 92.9 1.2 2.6E-05 26.5 7.7 65 121-189 12-81 (89)
371 PF05790 C2-set: Immunoglobuli 92.2 1.4 3E-05 25.6 7.1 27 170-196 43-70 (80)
372 PF06328 Lep_receptor_Ig: Ig-l 92.1 1.5 3.3E-05 26.0 7.2 46 34-82 8-58 (89)
373 cd00096 Ig Immunoglobulin doma 92.1 0.23 4.9E-06 26.8 3.1 26 47-72 1-26 (74)
374 PHA02865 MHC-like TNF binding 91.6 1.4 3E-05 33.2 7.1 21 129-149 216-238 (338)
375 KOG0613|consensus 91.2 0.75 1.6E-05 40.3 6.1 78 122-199 344-422 (1205)
376 cd07694 Ig2_CD4 Second immunog 91.1 2.1 4.5E-05 25.4 7.3 58 38-95 8-72 (88)
377 cd05888 Ig1_Nectin-4_like Frst 91.0 1.7 3.8E-05 26.3 6.3 21 46-66 2-25 (100)
378 cd05721 IgV_CTLA-4 Immunoglobu 89.3 3.8 8.2E-05 25.7 9.0 32 35-66 4-38 (115)
379 cd05713 Ig_MOG_like Immunoglob 88.1 0.6 1.3E-05 28.2 2.7 24 44-67 1-27 (100)
380 smart00406 IGv Immunoglobulin 87.7 3.5 7.5E-05 23.3 6.5 22 46-67 1-24 (81)
381 cd05902 Ig_Neurocan Immunoglob 87.5 4.2 9.1E-05 25.2 6.2 23 44-66 2-31 (110)
382 cd05890 Ig2_Nectin-1_like Seco 86.6 4 8.6E-05 24.6 5.3 69 130-204 23-97 (98)
383 PF06832 BiPBP_C: Penicillin-B 86.2 5.1 0.00011 23.6 7.4 55 129-197 31-85 (89)
384 TIGR00864 PCC polycystin catio 86.0 38 0.00083 33.5 16.6 186 4-208 1670-1866(2740)
385 cd05889 Ig1_DNAM-1_like First 86.0 5.7 0.00012 24.0 6.4 23 45-67 1-24 (96)
386 PHA03269 envelope glycoprotein 85.5 10 0.00022 30.2 8.3 71 123-193 338-417 (566)
387 PHA02914 Immunoglobulin-like d 85.4 5.3 0.00011 30.8 6.7 71 122-192 274-368 (500)
388 PHA03270 envelope glycoprotein 85.0 17 0.00036 28.5 10.1 71 124-194 231-309 (466)
389 cd05887 Ig1_Nectin-3_like Firs 84.2 7 0.00015 23.6 6.2 22 45-66 1-23 (96)
390 PHA02865 MHC-like TNF binding 82.9 5.2 0.00011 30.2 5.7 36 27-66 201-238 (338)
391 PHA03273 envelope glycoprotein 82.8 18 0.00039 28.6 8.6 72 123-194 246-326 (486)
392 PHA03189 UL14 tegument protein 82.7 17 0.00038 27.0 8.2 20 177-196 140-159 (348)
393 PF11049 KSHV_K1: Glycoprotein 82.2 4.2 9.1E-05 22.4 3.8 33 48-82 2-34 (71)
394 PF02124 Marek_A: Marek's dise 82.1 15 0.00033 25.8 10.6 23 131-153 93-117 (211)
395 PF03921 ICAM_N: Intercellular 76.7 14 0.00029 22.2 7.5 78 115-205 6-85 (91)
396 PF03921 ICAM_N: Intercellular 75.9 14 0.00031 22.1 5.3 33 31-63 5-37 (91)
397 KOG1480|consensus 75.5 0.95 2.1E-05 37.6 0.1 45 28-72 128-173 (909)
398 PF06832 BiPBP_C: Penicillin-B 75.5 14 0.0003 21.7 8.8 44 28-72 9-56 (89)
399 PHA03271 envelope glycoprotein 74.0 41 0.00089 26.4 10.4 71 124-194 257-336 (490)
400 PHA03112 IL-18 binding protein 70.0 28 0.0006 22.8 6.5 73 124-196 35-122 (141)
401 KOG1026|consensus 68.5 4.5 9.7E-05 34.2 2.4 73 122-207 202-274 (774)
402 PHA02914 Immunoglobulin-like d 68.4 56 0.0012 25.6 8.7 23 169-191 80-102 (500)
403 KOG1026|consensus 66.7 13 0.00028 31.6 4.6 35 38-72 201-235 (774)
404 PF05955 Herpes_gp2: Equine he 62.6 47 0.001 22.7 9.9 61 132-192 112-178 (226)
405 TIGR00864 PCC polycystin catio 56.1 2.4E+02 0.0052 28.8 17.6 189 3-207 1839-2040(2740)
406 PHA03282 envelope glycoprotein 55.9 32 0.0007 27.4 4.8 23 170-192 124-146 (540)
407 PHA03286 envelope glycoprotein 49.8 36 0.00078 27.0 4.2 39 170-208 127-165 (492)
408 KOG0613|consensus 48.5 46 0.00099 30.1 5.1 35 38-72 343-378 (1205)
409 PF13220 DUF4028: Protein of u 44.0 21 0.00047 18.6 1.6 19 179-197 7-25 (65)
410 PF00801 PKD: PKD domain; Int 41.1 62 0.0013 17.7 5.0 30 38-67 5-34 (69)
411 PHA03283 envelope glycoprotein 40.4 57 0.0012 26.5 4.1 37 170-207 134-170 (542)
412 PF12988 DUF3872: Domain of un 40.3 1E+02 0.0022 20.0 5.9 35 31-65 34-73 (137)
413 PF02480 Herpes_gE: Alphaherpe 38.5 10 0.00022 30.0 0.0 38 170-207 89-126 (439)
414 PF02480 Herpes_gE: Alphaherpe 36.3 67 0.0015 25.7 4.1 21 170-190 269-289 (439)
415 PF01688 Herpes_gI: Alphaherpe 34.3 1.3E+02 0.0029 20.3 4.6 24 170-193 124-147 (161)
416 PHA03282 envelope glycoprotein 31.2 63 0.0014 25.9 3.1 21 170-190 333-353 (540)
417 KOG3611|consensus 30.2 1.1E+02 0.0023 26.5 4.5 60 129-192 571-634 (737)
418 PF03174 CHB_HEX_C: Chitobiase 26.9 1.3E+02 0.0027 16.9 5.1 27 123-152 11-37 (75)
419 PF02440 Adeno_E3_CR1: Adenovi 24.6 1.4E+02 0.003 16.5 4.7 21 124-148 2-22 (63)
420 PHA03281 envelope glycoprotein 23.6 1.8E+02 0.0038 24.1 4.3 39 170-208 298-336 (642)
421 PF11141 DUF2914: Protein of u 22.5 1.5E+02 0.0033 16.4 6.7 58 143-205 8-65 (66)
422 smart00635 BID_2 Bacterial Ig- 22.5 1.7E+02 0.0036 16.7 4.4 40 31-70 4-46 (81)
423 KOG4597|consensus 22.2 54 0.0012 26.3 1.4 32 34-65 201-232 (560)
424 PHA03283 envelope glycoprotein 20.9 1.5E+02 0.0033 24.2 3.5 21 170-190 315-335 (542)
425 PF13141 DUF3979: Protein of u 20.1 1.1E+02 0.0023 18.3 2.0 36 44-83 37-72 (114)
No 1
>KOG3513|consensus
Probab=99.97 E-value=8.3e-29 Score=197.47 Aligned_cols=193 Identities=26% Similarity=0.451 Sum_probs=159.6
Q ss_pred ceeeEEEeeccCCCcceecccccCCCCCeEEeCCCccEEeeCCeEEEEcccCCCCCCcEEEEeCCEEecCCC--------
Q psy2441 3 IGTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSR-------- 74 (212)
Q Consensus 3 ~g~Y~C~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~l~~~~-------- 74 (212)
+|.|+|.+.|..| .......+.+..+|.+...+++..+..|+++.|.|.+.|.|.|+|+|+|||.+|....
T Consensus 306 ~G~Y~C~AeN~~G-~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~ 384 (1051)
T KOG3513|consen 306 AGEYECIAENSRG-SATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKID 384 (1051)
T ss_pred CeEEEEEEecccc-cceeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEe
Confidence 6999999999999 4446677777999999999999999999999999999999999999999999997541
Q ss_pred CCeeEEe--ecCCCCeEEEeeeC------CccceeEEeecCCCCCCCccccCCcc--eeEecCCcEEEEEeeeeCCCCce
Q psy2441 75 NPRYNLL--TSGAPGTYIKIKPN------LFSPLSVYSADKIPPGFPQITEAPST--KVVEISHTTVLHCSASGNPPPKI 144 (212)
Q Consensus 75 ~~~~~~~--~~~~~g~~l~i~~~------~~~~~~v~~~~~~~~~~p~~~~~~~~--~~~~~g~~~~l~C~~~~~p~~~i 144 (212)
...+.+. ...|.|.|-|++.+ ..+.|.|... .|.|...+.. ..+..|..+.|.|.+.+.|.|.+
T Consensus 385 ~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~------~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~ 458 (1051)
T KOG3513|consen 385 DGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLAS------APVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKV 458 (1051)
T ss_pred CCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEcc------CCCCCCCccceEEEEEeCCeEEEeeccCCCCcceE
Confidence 1112222 22588999999988 5566666642 2555555443 35677999999999999999999
Q ss_pred EEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEEEEecc
Q psy2441 145 SWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGT 208 (212)
Q Consensus 145 ~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v~~~ 208 (212)
.|.+++..+.. ..|+.+..+ ++|.|.+++.+|.|.|+|.|.|..|.+... ..|.|++.
T Consensus 459 ~W~k~~~~~~~--~~r~~i~ed---GtL~I~n~t~~DaG~YtC~A~N~~G~a~~~-~~L~Vkd~ 516 (1051)
T KOG3513|consen 459 SWLKGGEKLLQ--SGRIRILED---GTLEISNVTRSDAGKYTCVAENKLGKAEST-GNLIVKDA 516 (1051)
T ss_pred EEEcCCccccc--CceEEECCC---CcEEecccCcccCcEEEEEEEcccCccceE-EEEEEecC
Confidence 99999884444 488888888 899999999999999999999999999998 99998875
No 2
>KOG4194|consensus
Probab=99.93 E-value=2.9e-25 Score=167.36 Aligned_cols=191 Identities=25% Similarity=0.448 Sum_probs=154.6
Q ss_pred ceeeEEEeeccCCCcceecccccCCCCCeEEeCCCccEEeeCCeEEEEcccCCCCCCcEEEEeCCEE-ecCCCC------
Q psy2441 3 IGTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLP-VDTSRN------ 75 (212)
Q Consensus 3 ~g~Y~C~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~-l~~~~~------ 75 (212)
.|+|+|.++|.+|..-...+++.+...|.|...|.+.++..|+.+.|.|.+.|.|.|+|.|.|+|.. ......
T Consensus 586 ~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vm 665 (873)
T KOG4194|consen 586 EGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVM 665 (873)
T ss_pred CceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeec
Confidence 6999999999999877777778888999999999999999999999999999999999999998765 333322
Q ss_pred ---CeeEEeec--CCCCeEEEeeeC------CccceeEEeecCCCCCCCccccCCcceeEecCCcEEEEEeeeeCCC-Cc
Q psy2441 76 ---PRYNLLTS--GAPGTYIKIKPN------LFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPP-PK 143 (212)
Q Consensus 76 ---~~~~~~~~--~~~g~~l~i~~~------~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~ 143 (212)
..|-+... +|.|.|.|-+.+ ..+.++|... |.+..+.....+..|+.+.|.|.+.+.|. |+
T Consensus 666 pedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~-------p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr 738 (873)
T KOG4194|consen 666 PEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLET-------PSFSIPLEDQLVVVGETLVLQCLAEGAPADPR 738 (873)
T ss_pred CCCCEEEEecccccccceeEEeeeccccceeeceEEEEecC-------CcccccccceEEEecceEEEEEecCCCCCCcc
Confidence 33333332 488888887776 5567777765 77777777888889999999999999888 99
Q ss_pred eEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEEEE
Q psy2441 144 ISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205 (212)
Q Consensus 144 i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v 205 (212)
+.|+|+++++-.. .+-.+..++ ..|.+.+...+|.|.|+|...|..|..... +.+.+
T Consensus 739 ~~W~k~d~pil~t--~rh~f~d~d--Qllvv~~~~~~daG~yTcem~~~~~~~~~~-i~l~~ 795 (873)
T KOG4194|consen 739 LEWFKEDKPILIT--ERHTFPDGD--QLLVVKENLVEDAGIYTCEMSNTLGTERIH-ICLLV 795 (873)
T ss_pred ccccCCCCceEEe--ecccCCCCC--eEEEEEehhhhhcceEEEEEEeeccceeeE-EEEEE
Confidence 9999999888664 332333333 788999999999999999999999988777 55544
No 3
>KOG3513|consensus
Probab=99.92 E-value=1.1e-23 Score=168.64 Aligned_cols=203 Identities=24% Similarity=0.415 Sum_probs=155.3
Q ss_pred ceeeEEEeeccCCCcceecccccCCCCCeEEeCCCcc--EEeeCCeEEEEcccCCCCCCcEEEEeCCEEecCCCCCeeEE
Q psy2441 3 IGTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTK--VVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNL 80 (212)
Q Consensus 3 ~g~Y~C~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~l~~~~~~~~~~ 80 (212)
+|.|+|.|.|..|..-......+...+|.|...+... .+..|..+.|.|...+.|.+.++|.|++..+... .|+.+
T Consensus 398 sg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~--~r~~i 475 (1051)
T KOG3513|consen 398 SGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQS--GRIRI 475 (1051)
T ss_pred CeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccC--ceEEE
Confidence 6999999999999887665555557778888777554 6678999999999999999999999998855444 66666
Q ss_pred eec----------CCCCeEEEeeeCCcc--ceeEEeecCCCCCCCccccCCcceeEecCCcEEEEEeeeeCCC--CceEE
Q psy2441 81 LTS----------GAPGTYIKIKPNLFS--PLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPP--PKISW 146 (212)
Q Consensus 81 ~~~----------~~~g~~l~i~~~~~~--~~~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~i~W 146 (212)
..+ +|.|.|.|++.+... ..+....+ ..++.+...+....+..|+.+.|.|.+...+. ..|.|
T Consensus 476 ~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~V---kd~tri~~~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W 552 (1051)
T KOG3513|consen 476 LEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIV---KDATRITLAPSNTDVKVGESVTLTCEASHDPSLDITFTW 552 (1051)
T ss_pred CCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEE---ecCceEEeccchhhhccCceEEEEeecccCCCcceEEEE
Confidence 544 499999999988222 22222211 12367777888888999999999999976654 57889
Q ss_pred EeCCEEecCC-CCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEEEEecceec
Q psy2441 147 IREMLPVDTS-RNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVD 211 (212)
Q Consensus 147 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v~~~~~p 211 (212)
.+||..+... ...++........+.|+|.+++.+|+|.|.|.|+....++... +.+.|++++.|
T Consensus 553 ~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~-A~l~V~gpPgp 617 (1051)
T KOG3513|consen 553 KKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASAR-ADLLVRGPPGP 617 (1051)
T ss_pred EECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhcc-cceEEecCCCC
Confidence 9999988765 2333433333222569999999999999999999988888877 88888887765
No 4
>KOG4221|consensus
Probab=99.89 E-value=7.2e-22 Score=158.54 Aligned_cols=199 Identities=23% Similarity=0.387 Sum_probs=152.3
Q ss_pred ceeeEEEeecc-CCCcceecccccCCCCCeEEeCCCccEEeeCCeEEEEcccCCCCCCcEEEEeCCEEecCCCCCeeEEe
Q psy2441 3 IGTYIKIKPNL-FSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLL 81 (212)
Q Consensus 3 ~g~Y~C~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~l~~~~~~~~~~~ 81 (212)
.|.|+|.+.-. .+......+.+.+...+.|...+.+.++..|+.+.|.|.+.+.|.+.+.|.|+..++... +|+.+.
T Consensus 113 eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~--~r~i~l 190 (1381)
T KOG4221|consen 113 EGVYQCLATVEDVGSILSRTAKVALAGLADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLD--SRVIVL 190 (1381)
T ss_pred CceEEEEEEccccceeecceEEEEecccCccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCC--CcEEEc
Confidence 58999999887 555565666666678888888889999999999999999999888999999999877765 454443
Q ss_pred ec----------CCCCeEEEeeeC-------CccceeEEeecCCCCCCCccccCCcceeEecCCcEEEEEeeeeCCCCce
Q psy2441 82 TS----------GAPGTYIKIKPN-------LFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKI 144 (212)
Q Consensus 82 ~~----------~~~g~~l~i~~~-------~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i 144 (212)
.. .|.|.|-|.... ..+.++|....... ..-.|...+....+.+|+++.|.|.+.+.|.|.+
T Consensus 191 psG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~-~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v 269 (1381)
T KOG4221|consen 191 PSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGAL-NKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSV 269 (1381)
T ss_pred CCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccc-cceeeecCCCccccccCCcEEEEEEecCCCCCce
Confidence 32 377888887765 33445554211000 0123456677788999999999999999999999
Q ss_pred EEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEEEEecce
Q psy2441 145 SWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQ 209 (212)
Q Consensus 145 ~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v~~~~ 209 (212)
.|.+|+..+... ..++.+.-. +.|.|.+++..|+|.|+|.|.|......+. +.+.|.+++
T Consensus 270 ~Wlrng~~i~~d-s~rivl~g~---~slliS~a~~~dSg~YtC~Atn~~D~idas-aev~V~a~P 329 (1381)
T KOG4221|consen 270 KWLRNGEKISVD-SYRIVLVGG---SSLLISNATDDDSGKYTCRATNTNDSIDAS-AEVTVLAPP 329 (1381)
T ss_pred EEeeCCeeeeec-ceEEEEecc---cceEEeccccccCceEEEEecCCCcccccc-eEEEEEcCC
Confidence 999999999876 356655544 789999999999999999999965555555 777777653
No 5
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.88 E-value=1.5e-20 Score=138.71 Aligned_cols=192 Identities=17% Similarity=0.198 Sum_probs=122.9
Q ss_pred ceeeEEEeeccCCCcceecccccC--CCCCeEEeCCCccEEeeCCeEEEEccc-----CCCCCCcEEEEeCCEEecCC--
Q psy2441 3 IGTYIKIKPNLFSPLSVYSADKIP--PGFPQITEAPSTKVVEISHTTVLHCSA-----SGNPPPKISWIREMLPVDTS-- 73 (212)
Q Consensus 3 ~g~Y~C~~~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~v~~g~~v~l~C~~-----~~~p~~~v~W~k~g~~l~~~-- 73 (212)
+|.|+|.++|..+..... ..+.+ ..+|.+...+....+.+|..+.|.|.. .+.|++.++|++++. +...
T Consensus 94 sG~Y~C~a~N~~g~~~~s-~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~~~r~ 171 (326)
T PHA02785 94 SGIYICITKNETYCDMMS-LNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LRNKRL 171 (326)
T ss_pred CeEEEEEEECCCcceEEE-EEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-cCCcce
Confidence 599999999988765533 22222 233333333445667799999999972 356888999998652 2211
Q ss_pred ---CCCeeEEeec--CCCCeEEEeeeCCcc------ceeEEeecCCCCCCCccccCCcceeEecCCcEEEEEeeeeCCC-
Q psy2441 74 ---RNPRYNLLTS--GAPGTYIKIKPNLFS------PLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPP- 141 (212)
Q Consensus 74 ---~~~~~~~~~~--~~~g~~l~i~~~~~~------~~~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~- 141 (212)
.+..+.+... +|.|.|.|...+... ...+...+..+..+|.+ ..+....+..|+.+.|.|.+.+.|.
T Consensus 172 ~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~-~~p~~~~~~~G~~v~L~C~a~g~P~~ 250 (326)
T PHA02785 172 KQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTM-QLPEGVVTSIGSNLTIACRVSLRPPT 250 (326)
T ss_pred EecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCcee-cCCCcEEecCCCcEEEEEEEECCCCC
Confidence 0133444333 489999998876211 11112211111222433 3445666778999999999998876
Q ss_pred --CceEEEeCCEEecCC---CCCceEEcCCC--------CceeEEEcCCCCCCCeeEEEEEEcccccce
Q psy2441 142 --PKISWIREMLPVDTS---RNPRYNLLTSG--------APGALQITNSIEEDQGKYECVAENEVGTEY 197 (212)
Q Consensus 142 --~~i~W~~~~~~~~~~---~~~~~~~~~~~--------~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~ 197 (212)
+.+.|++||..+... ...++....+. ....|.|.+++.+|.|.|.|.|.|..|...
T Consensus 251 ~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~ 319 (326)
T PHA02785 251 TDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISK 319 (326)
T ss_pred CCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceE
Confidence 489999999987543 12233222110 136899999999999999999999885544
No 6
>KOG4221|consensus
Probab=99.88 E-value=8e-22 Score=158.27 Aligned_cols=192 Identities=27% Similarity=0.429 Sum_probs=149.9
Q ss_pred ceeeEEEeeccCCCcceecccccC------CCCCeEEeCCCccEEeeCCeEEEEcccCCCCCCcEEEEeCCEEecCCCCC
Q psy2441 3 IGTYIKIKPNLFSPLSVYSADKIP------PGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNP 76 (212)
Q Consensus 3 ~g~Y~C~~~~~~~~~~~~~~~~~~------~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~l~~~~~~ 76 (212)
+|.|+|.+.+.........+.+.+ ...-.|...|...++.+|+++.|.|.+.+.|.|.|.|.|||+.|..+. .
T Consensus 205 ~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds-~ 283 (1381)
T KOG4221|consen 205 TGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDS-Y 283 (1381)
T ss_pred CceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecc-e
Confidence 689999999876654333333322 233346678889999999999999999999999999999999887652 3
Q ss_pred eeEEeec----------CCCCeEEEeeeC------CccceeEEeecCCCCCCCccccCCcceeEecCCcEEEEEeeeeCC
Q psy2441 77 RYNLLTS----------GAPGTYIKIKPN------LFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNP 140 (212)
Q Consensus 77 ~~~~~~~----------~~~g~~l~i~~~------~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p 140 (212)
++.+... +|.|.|.|++.+ ..+.++|... |.|...+....+.++.++.|.|.+.+.|
T Consensus 284 rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~-------P~~~~~p~~l~A~e~~die~ec~~~g~p 356 (1381)
T KOG4221|consen 284 RIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAP-------PGFTKAPTTLVAHESMDIEFECPVSGKP 356 (1381)
T ss_pred EEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcC-------CCCCCCCcceeeeeccceeEeCCCCCCC
Confidence 4443311 489999999887 4455556543 7888888888888899999999999999
Q ss_pred CCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEEEEecc
Q psy2441 141 PPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGT 208 (212)
Q Consensus 141 ~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v~~~ 208 (212)
.|.+.|++||..+..+ ..+++..+ ..|.|.-+...|.|.|.|.+.|..|.+... +.|.+..+
T Consensus 357 ~p~v~w~kNgd~~ips--dy~ki~~~---~~lrIlgi~~sdeg~yQcvaen~~G~a~a~-a~l~vv~~ 418 (1381)
T KOG4221|consen 357 IPTVRWYKNGDRIIPS--DYFKIVGG---GNLRILGIVKSDEGFYQCVAENDAGSAQAA-AQLEVVPQ 418 (1381)
T ss_pred cceEEEEecCcccCcc--cceEecCC---CCcEEEEEecccchhhhhhhccCcccccch-hhheeccC
Confidence 9999999999877764 56666666 338888889999999999999999999887 77655443
No 7
>KOG4222|consensus
Probab=99.86 E-value=3.7e-21 Score=153.65 Aligned_cols=194 Identities=25% Similarity=0.459 Sum_probs=158.2
Q ss_pred ceeeEEEeeccCCCcceecccccC-CCCCeEEeCCCccEEeeCCeEEEEccc-CCCCCCcEEEEeCCEEecCCCCCeeEE
Q psy2441 3 IGTYIKIKPNLFSPLSVYSADKIP-PGFPQITEAPSTKVVEISHTTVLHCSA-SGNPPPKISWIREMLPVDTSRNPRYNL 80 (212)
Q Consensus 3 ~g~Y~C~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~v~~g~~v~l~C~~-~~~p~~~v~W~k~g~~l~~~~~~~~~~ 80 (212)
.|.|.|.+.|..+........+.+ ..+-.|.+.|....+..|+.+.|.|.- .+.|.+.++|.|+|.++......+..+
T Consensus 104 ~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~l 183 (1281)
T KOG4222|consen 104 HGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIAL 183 (1281)
T ss_pred CceeEeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEE
Confidence 589999999999987666555555 456667777888888899999999997 789999999999999987332233322
Q ss_pred eec----------CCCCeEEEeeeC-------CccceeEEeecCCCCCCCccccCCcceeEecCCcEEEEEeeeeCCCCc
Q psy2441 81 LTS----------GAPGTYIKIKPN-------LFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPK 143 (212)
Q Consensus 81 ~~~----------~~~g~~l~i~~~-------~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~ 143 (212)
+.. .|.|.|.||.++ ..++++|+.. |.|...+....+..|..+.+.|.+.|.|.|.
T Consensus 184 isgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~-------P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~ 256 (1281)
T KOG4222|consen 184 ISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEK-------PWFWKRPKDLAVLVGAAAEFDCRVGGDPQPT 256 (1281)
T ss_pred ecCCcEEEeccccCCCceeeeeecccccccccccceeeeccC-------CccccccccceeecccccccccccCCCCCCc
Confidence 221 388999999888 5556777764 8899999999999999999999999999999
Q ss_pred eEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEEEEecce
Q psy2441 144 ISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQ 209 (212)
Q Consensus 144 i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v~~~~ 209 (212)
+.|.+++..++. .++.+..+. .+|.|.+++..|.|.|.|.+.|..|..... .++.|++++
T Consensus 257 Vrwkk~~~~~P~---~ry~i~~d~--qtl~i~r~tp~deg~y~C~a~n~vG~l~as-a~ltV~apP 316 (1281)
T KOG4222|consen 257 VRWKKDDPSLPR---SRYSILDDT--QTLRIDRVTPTDEGTYVCPAENLVGGLEAS-ATLTVQAPP 316 (1281)
T ss_pred eeeeccCCCCCc---cceeeeecc--ccccccccCCCcccceeeeccccccccccc-cceEEecCc
Confidence 999997766654 555555554 789999999999999999999999999988 999998864
No 8
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.84 E-value=8.8e-20 Score=111.28 Aligned_cols=96 Identities=22% Similarity=0.362 Sum_probs=81.8
Q ss_pred CccccCCcceeEecCCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcc
Q psy2441 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENE 192 (212)
Q Consensus 113 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~ 192 (212)
|.|...+....+..|+.+.|.|.+.|.|.|.+.|++++..+... .++........+.|.|.++..+|+|.|+|.|.|.
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~--~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~ 78 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEG--EGIKIENTENSSKLTITEGQQEHCGCYTLEVENK 78 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCC--CcEEEEecCCeeEEEECCCChhhCEEEEEEEEcC
Confidence 45566777788999999999999999999999999999998764 4555554444488999999999999999999999
Q ss_pred cccceecceEEEEecceec
Q psy2441 193 VGTEYSPSTMLYVKGTQVD 211 (212)
Q Consensus 193 ~g~~~~~~~~l~v~~~~~p 211 (212)
.|..... +.|.|.+++.|
T Consensus 79 ~G~~~~~-~~l~V~~~P~p 96 (98)
T cd05762 79 LGSRQAQ-VNLTVVDKPDP 96 (98)
T ss_pred CCceeEE-EEEEEecCCCC
Confidence 9999988 99999887655
No 9
>KOG4222|consensus
Probab=99.83 E-value=8.4e-20 Score=146.10 Aligned_cols=188 Identities=26% Similarity=0.464 Sum_probs=152.3
Q ss_pred ceeeEEEeeccCCCcceecccccCCCCCeEEeCCCccEEeeCCeEEEEcccCCCCCCcEEEEeCCEEecCCCCCeeEEee
Q psy2441 3 IGTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLT 82 (212)
Q Consensus 3 ~g~Y~C~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~l~~~~~~~~~~~~ 82 (212)
.|.|.|.+.|..|.-......+.+.++|.|...+.+..+..|..+.+.|.+.|.|.|.+.|.|++..+.. .|..+..
T Consensus 199 ~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~---~ry~i~~ 275 (1281)
T KOG4222|consen 199 EGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPR---SRYSILD 275 (1281)
T ss_pred CceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCCCCc---cceeeee
Confidence 5999999999999988888888889999999999999999999999999999999999999998776665 3333333
Q ss_pred c-----------CCCCeEEEeeeC------CccceeEEeecCCCCCCCccccCCcceeEecCCcEEEEEeeeeCCCCceE
Q psy2441 83 S-----------GAPGTYIKIKPN------LFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKIS 145 (212)
Q Consensus 83 ~-----------~~~g~~l~i~~~------~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~ 145 (212)
+ .|.|.|+|...+ ..+.++|+.. |.|...+.+..+..|..++|.|.+.++|.|.+.
T Consensus 276 d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~ap-------P~f~kkp~dq~v~lg~~vt~pc~~~gnP~Pavf 348 (1281)
T KOG4222|consen 276 DTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAP-------PSFGKKPRDQKVALGGTVTFPCETLGNPPPAVF 348 (1281)
T ss_pred ccccccccccCCCcccceeeeccccccccccccceEEecC-------cccccccCccccccCceEEeeeecCCCCCcceE
Confidence 2 278899999988 5567777753 788888888888889999999999999999999
Q ss_pred EEeCCEEec-C-----CCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEEE
Q psy2441 146 WIREMLPVD-T-----SRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLY 204 (212)
Q Consensus 146 W~~~~~~~~-~-----~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~ 204 (212)
|.+.+...- . ..+.+..+... .+|+|.++...|.|.|.|...+..|..... ..+.
T Consensus 349 W~keg~q~llf~~~p~~~~~r~svs~~---g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~-a~~~ 409 (1281)
T KOG4222|consen 349 WLKEGSQDLLFSASPPSSNGRGSVSPT---GTLTITNVRQSDEGYYVCQTQTSAGSSLTK-AYLE 409 (1281)
T ss_pred EeccCcceecccCCCCCcCccceecCC---CCcccccccccccceEeecccccccccccc-eeEE
Confidence 999764321 1 12333334443 699999999999999999988887776665 4433
No 10
>KOG4194|consensus
Probab=99.83 E-value=1.1e-19 Score=137.61 Aligned_cols=175 Identities=27% Similarity=0.402 Sum_probs=136.8
Q ss_pred CCCCeEEeCCCccEEeeCCeEEEEcccCC--CCCCcEEEEeCCEEecCC----------C------------CCeeEEe-
Q psy2441 27 PGFPQITEAPSTKVVEISHTTVLHCSASG--NPPPKISWIREMLPVDTS----------R------------NPRYNLL- 81 (212)
Q Consensus 27 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~--~p~~~v~W~k~g~~l~~~----------~------------~~~~~~~- 81 (212)
..+|.+...|....+..|+.++|+|.+.+ ..+..+.|.++....... + ...+.+.
T Consensus 501 spkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~n 580 (873)
T KOG4194|consen 501 SPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDN 580 (873)
T ss_pred CCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeee
Confidence 57889888999999999999999999965 344579999986532211 0 0111111
Q ss_pred -ecCCCCeEEEeeeC-------CccceeEEeecCCCCCCCccccCCcceeEecCCcEEEEEeeeeCCCCceEEEeCCEE-
Q psy2441 82 -TSGAPGTYIKIKPN-------LFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLP- 152 (212)
Q Consensus 82 -~~~~~g~~l~i~~~-------~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~- 152 (212)
...++|.|-|+..+ ..++++|... |.|...|.+.+.+.|.-+.|.|.+.|.|.|.|.|.++|..
T Consensus 581 Vt~td~grYQCVvtN~FGStysqk~KltV~~~-------PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtd 653 (873)
T KOG4194|consen 581 VTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQA-------PSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTD 653 (873)
T ss_pred eecccCceEEEEEecccCcchhheeEEEeecc-------CccccCcccceeecccceeeeeeccCCCCcceeehhcCCCC
Confidence 11488899998877 4456666654 8899999999999999999999999999999999998766
Q ss_pred ecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEEEEecceec
Q psy2441 153 VDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVD 211 (212)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v~~~~~p 211 (212)
++.....|...+.++ ..+.|.+++.+|.|.|+|.|.|..|..... ++|.|.+.+.+
T Consensus 654 FPAA~eRRl~Vmped--d~f~Itnvk~eD~GiYtC~A~n~AG~isan-AtL~V~e~p~f 709 (873)
T KOG4194|consen 654 FPAARERRLHVMPED--DVFFITNVKIEDQGIYTCTAQNVAGQISAN-ATLTVLETPSF 709 (873)
T ss_pred CchhhhheeeecCCC--CEEEEecccccccceeEEeeeccccceeec-eEEEEecCCcc
Confidence 444444566666665 789999999999999999999999999988 99999887544
No 11
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.82 E-value=1.6e-18 Score=120.87 Aligned_cols=147 Identities=14% Similarity=0.164 Sum_probs=99.4
Q ss_pred CCccEEeeCCeEEEEcccCCCC-----------CCcEEEEeCCEEe--cC------------C----CCCeeEEeec--C
Q psy2441 36 PSTKVVEISHTTVLHCSASGNP-----------PPKISWIREMLPV--DT------------S----RNPRYNLLTS--G 84 (212)
Q Consensus 36 ~~~~~v~~g~~v~l~C~~~~~p-----------~~~v~W~k~g~~l--~~------------~----~~~~~~~~~~--~ 84 (212)
.....+.+|+++.|.|.+.++| .+.|.|+|++... .. . ....+.+... +
T Consensus 29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~ 108 (227)
T PHA02826 29 LTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINI 108 (227)
T ss_pred cceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChH
Confidence 3457789999999999987644 3489999998652 10 0 0123333333 4
Q ss_pred CCCeEEEeeeCCccceeEEeecCCCCCCCccccCCcceeEecCCcEEEEEeee-----eCCCCceEEEeCCEEecCCCCC
Q psy2441 85 APGTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSAS-----GNPPPKISWIREMLPVDTSRNP 159 (212)
Q Consensus 85 ~~g~~l~i~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-----~~p~~~i~W~~~~~~~~~~~~~ 159 (212)
|.|.|.|...+............+. .......+.+|+.+.|.|.+. +.|.|.+.|++++..+... .
T Consensus 109 DsG~Y~C~a~N~~~~~~~~i~L~V~-------~~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~--~ 179 (227)
T PHA02826 109 DEGIYICTISSGNICEESTIRLTFD-------SGTINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYT--D 179 (227)
T ss_pred HCEEEEEEEEECCcceEEEEEEEEe-------cCCccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCC--C
Confidence 8889999887733222221111111 111234567899999999985 3457899999999998754 4
Q ss_pred ceEEcCCCCceeEEEcCCCCCCCeeEEEEEEccc
Q psy2441 160 RYNLLTSGAPGALQITNSIEEDQGKYECVAENEV 193 (212)
Q Consensus 160 ~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~ 193 (212)
++....++ ..|.|.+++.+|+|.|+|.|....
T Consensus 180 r~~~~~~~--~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 180 RIQLRNNN--STLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred CEEEeCCC--CEEEECcCCHHhCEEEEEEEEEeE
Confidence 55554443 689999999999999999998764
No 12
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.77 E-value=6.2e-18 Score=101.21 Aligned_cols=87 Identities=32% Similarity=0.528 Sum_probs=72.8
Q ss_pred CccccCCcceeEecCCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcc
Q psy2441 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENE 192 (212)
Q Consensus 113 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~ 192 (212)
|.+...+.+..+.+|+.+.|.|.+.|+|.|.+.|++++..+... .++. .++ ..|.|.++..+|+|.|.|.|.|.
T Consensus 2 p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~--~~~~--~~~--~~L~I~~v~~~D~G~Y~C~A~N~ 75 (88)
T cd05851 2 ADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPAT--AEIS--MSG--AVLKIFNIQPEDEGTYECEAENI 75 (88)
T ss_pred CceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCC--CEEe--cCC--CEEEECcCChhhCEEEEEEEEcC
Confidence 67777888888999999999999999999999999998776543 2322 222 68999999999999999999999
Q ss_pred cccceecceEEEEe
Q psy2441 193 VGTEYSPSTMLYVK 206 (212)
Q Consensus 193 ~g~~~~~~~~l~v~ 206 (212)
.|..... +.|.|+
T Consensus 76 ~G~~~~~-~~l~V~ 88 (88)
T cd05851 76 KGKDKHQ-ARVYVQ 88 (88)
T ss_pred CCceEEE-EEEEEC
Confidence 9998877 777764
No 13
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.75 E-value=3.7e-17 Score=97.34 Aligned_cols=82 Identities=23% Similarity=0.366 Sum_probs=67.6
Q ss_pred ceeEecCCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecc
Q psy2441 121 TKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPS 200 (212)
Q Consensus 121 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~ 200 (212)
...+..|+.+.|.|.+.|.|.|.+.|++++.++... ..++..........|.|.++..+|+|.|.|.|.|..|.....
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~-~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~- 81 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTET-EGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHAS- 81 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccC-CCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEE-
Confidence 356788999999999999999999999999988653 235555443334789999999999999999999999998765
Q ss_pred eEEE
Q psy2441 201 TMLY 204 (212)
Q Consensus 201 ~~l~ 204 (212)
+.|.
T Consensus 82 ~~l~ 85 (86)
T cd05894 82 LFVK 85 (86)
T ss_pred EEEE
Confidence 5554
No 14
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.75 E-value=4.6e-17 Score=98.50 Aligned_cols=88 Identities=24% Similarity=0.467 Sum_probs=73.4
Q ss_pred CccccCCcceeEecCCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcc
Q psy2441 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENE 192 (212)
Q Consensus 113 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~ 192 (212)
|.+...+....+.+|+.+.|.|.+.++|.|.+.|++++..+... .++........+.|.|.++..+|+|.|.|.|.|.
T Consensus 4 ~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~--~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~ 81 (92)
T cd05747 4 ATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSS--QRHQITSTEYKSTFEISKVQMSDEGNYTVVVENS 81 (92)
T ss_pred CcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCC--CcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcC
Confidence 77777888889999999999999999999999999999887654 4454444333479999999999999999999999
Q ss_pred cccceecceEE
Q psy2441 193 VGTEYSPSTML 203 (212)
Q Consensus 193 ~g~~~~~~~~l 203 (212)
.|..... +.|
T Consensus 82 ~G~~~~~-~~l 91 (92)
T cd05747 82 EGKQEAQ-FTL 91 (92)
T ss_pred CCCEeEE-EEe
Confidence 9987655 443
No 15
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.74 E-value=2.1e-17 Score=95.84 Aligned_cols=74 Identities=35% Similarity=0.569 Sum_probs=62.9
Q ss_pred cCCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEEEE
Q psy2441 126 ISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205 (212)
Q Consensus 126 ~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v 205 (212)
+|+.+.|.|.+.|.|.|.+.|++++..+... .++....+ +.|.|.++..+|.|.|.|.|.|..|..... +.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~--~~~~~~~~---~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~-~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVD--RRHLVLSS---GTLRISRVALHDQGQYECQAVNIVGSQRTV-AQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCC--CCeEEccC---CeEEEeeCCHHhCEEEEEEEEeCCCceeEE-EEEeC
Confidence 5899999999999999999999999887653 34444444 689999999999999999999999998876 66654
No 16
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.74 E-value=3e-17 Score=94.50 Aligned_cols=73 Identities=30% Similarity=0.575 Sum_probs=63.3
Q ss_pred CCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEEEE
Q psy2441 127 SHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205 (212)
Q Consensus 127 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v 205 (212)
|+.+.|.|.+.+.|.|.+.|++++..+... .++....+ +.|.|.++..+|.|.|.|.|.|..|..... +.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~--~r~~~~~~---g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~-~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNN--SRISIWDD---GSLEILNITKLDEGSYTCFAENNRGKANST-GVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccC--CCEEEcCC---CEEEECcCChhHCEEEEEEEECCCCceeEE-EEEEC
Confidence 678999999999999999999999877553 57766666 689999999999999999999999999877 76653
No 17
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.73 E-value=9.8e-17 Score=97.02 Aligned_cols=83 Identities=29% Similarity=0.510 Sum_probs=67.1
Q ss_pred CcceeEecCCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCC-CCceeEEEcCCCCCCCeeEEEEEEcccccce
Q psy2441 119 PSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTS-GAPGALQITNSIEEDQGKYECVAENEVGTEY 197 (212)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~ 197 (212)
|....+.+|+.+.|.|.+.|.|.|.+.|++++..+... .++..... +....|.|.++..+|+|.|.|.|.|..|...
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 85 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALS--DHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGET 85 (92)
T ss_pred CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccC--CCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcce
Confidence 44567889999999999999999999999999988764 34433322 2235899999999999999999999999987
Q ss_pred ecceEEE
Q psy2441 198 SPSTMLY 204 (212)
Q Consensus 198 ~~~~~l~ 204 (212)
.. +.+.
T Consensus 86 ~~-~~v~ 91 (92)
T cd05737 86 VD-VTVS 91 (92)
T ss_pred EE-EEEe
Confidence 66 5554
No 18
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.72 E-value=1.7e-16 Score=96.64 Aligned_cols=83 Identities=24% Similarity=0.575 Sum_probs=68.9
Q ss_pred ceeEecCCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecc
Q psy2441 121 TKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPS 200 (212)
Q Consensus 121 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~ 200 (212)
...+..|+.+.|.|.+.|.|.|.+.|++++..+... ..++....++ ..|.|.++..+|.|.|.|.|.|..|.....
T Consensus 12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~-~~~~~~~~~~--~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~- 87 (95)
T cd05730 12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESG-EEKYSFNEDG--SEMTILDVDKLDEAEYTCIAENKAGEQEAE- 87 (95)
T ss_pred ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCC-CCEEEEeCCC--CEEEECCCChhhCEEEEEEEEcCCCeEEEE-
Confidence 356888999999999999999999999999887654 2344443332 679999999999999999999999998777
Q ss_pred eEEEEec
Q psy2441 201 TMLYVKG 207 (212)
Q Consensus 201 ~~l~v~~ 207 (212)
+.|.|.+
T Consensus 88 ~~L~V~~ 94 (95)
T cd05730 88 IHLKVFA 94 (95)
T ss_pred EEEEEEe
Confidence 8877754
No 19
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.72 E-value=7.2e-17 Score=93.19 Aligned_cols=74 Identities=34% Similarity=0.448 Sum_probs=60.9
Q ss_pred EEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCC-CCceeEEEcCCCCCCCeeEEEEEEcccccceecceEEEE
Q psy2441 130 TVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTS-GAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205 (212)
Q Consensus 130 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v 205 (212)
+.|.|.+.|.|.|.+.|++++..+... ..++.+..+ .+..+|.|.++..+|+|.|.|.|.|..|..... +.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~-~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~-a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYN-TDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCH-ARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCC-CCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEE-EEEeC
Confidence 479999999999999999999988753 246655443 223489999999999999999999999999877 77654
No 20
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.72 E-value=1.5e-16 Score=97.16 Aligned_cols=86 Identities=20% Similarity=0.292 Sum_probs=68.3
Q ss_pred cceeEecCCcEEEEEeeee-CCCCceEEEeCCEEecCCCCCceEEcCC----CCceeEEEcCCCCCCCeeEEEEEEcccc
Q psy2441 120 STKVVEISHTTVLHCSASG-NPPPKISWIREMLPVDTSRNPRYNLLTS----GAPGALQITNSIEEDQGKYECVAENEVG 194 (212)
Q Consensus 120 ~~~~~~~g~~~~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~g~y~C~a~n~~g 194 (212)
....+.+|+++.|.|.+.| .|+|.+.|+|+|.++... ...+....+ .....|.|.++..+|+|.|+|.|.|..|
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~-~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G 89 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNK-LTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA 89 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCC-cceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence 3467889999999999999 899999999999998754 121211111 1137899999999999999999999999
Q ss_pred cceecceEEEEec
Q psy2441 195 TEYSPSTMLYVKG 207 (212)
Q Consensus 195 ~~~~~~~~l~v~~ 207 (212)
..... +.|.|++
T Consensus 90 ~~~~t-~~L~V~v 101 (101)
T cd04975 90 SKSLT-FELYVNV 101 (101)
T ss_pred cEEEE-EEEEEEC
Confidence 88777 7777764
No 21
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.72 E-value=1.3e-16 Score=96.28 Aligned_cols=90 Identities=36% Similarity=0.698 Sum_probs=75.0
Q ss_pred CccccCCcceeEecCCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcc
Q psy2441 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENE 192 (212)
Q Consensus 113 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~ 192 (212)
|.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... .++..........|.|.++..+|.|.|.|.|.|.
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~--~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~ 78 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSS--QRYQIESDGGSSSLTIKNVTREDAGTYTCVASNS 78 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESS--SSEEEEEETTEEEEEESSESGGGSEEEEEEEEET
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeee--eeeeeecccceeEEccCCCChhhCEEEEEEEEEC
Confidence 34556677788999999999999999999999999999999885 4444444334589999999999999999999999
Q ss_pred cccceecceEEEE
Q psy2441 193 VGTEYSPSTMLYV 205 (212)
Q Consensus 193 ~g~~~~~~~~l~v 205 (212)
.|..... +.|.|
T Consensus 79 ~g~~~~~-~~l~V 90 (90)
T PF07679_consen 79 SGEATAS-VNLTV 90 (90)
T ss_dssp TEEEEEE-EEEEE
T ss_pred CCEEEEE-EEEEC
Confidence 9988766 66654
No 22
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.71 E-value=9.2e-16 Score=113.43 Aligned_cols=148 Identities=22% Similarity=0.321 Sum_probs=99.5
Q ss_pred ccEEeeCCeEEEEccc-----CCCCCCcEEEEeCCEE----ecCCCCCeeEEeec--CCCCeEEEeeeCCcc------ce
Q psy2441 38 TKVVEISHTTVLHCSA-----SGNPPPKISWIREMLP----VDTSRNPRYNLLTS--GAPGTYIKIKPNLFS------PL 100 (212)
Q Consensus 38 ~~~v~~g~~v~l~C~~-----~~~p~~~v~W~k~g~~----l~~~~~~~~~~~~~--~~~g~~l~i~~~~~~------~~ 100 (212)
...+.+|+.+.|.|.+ .|+|.++++|||+|.. .......++.+... +|+|.|.|...+... .+
T Consensus 35 ~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L 114 (326)
T PHA02785 35 SFMELENEPVILPCPQINTLSSGYNILDILWEKRGADNDRIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSLNL 114 (326)
T ss_pred hhhhhcCCCEEEECCCccccccCCCCceEEEEECCCccceEEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEEEE
Confidence 3456689999999997 6888899999998743 11111233333333 499999999887432 23
Q ss_pred eEEeecCCCCCCCccccCCcceeEecCCcEEEEEee-----eeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEc
Q psy2441 101 SVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSA-----SGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQIT 175 (212)
Q Consensus 101 ~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-----~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 175 (212)
.|... .+ +.+...+....+.+|+.+.|.|.. .+.|.+.+.|+++.. +. ..++....+ +.|.|.
T Consensus 115 ~V~~~--~~---~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~---~~r~~~~~~---~~L~i~ 182 (326)
T PHA02785 115 TIVSV--SE---SNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LR---NKRLKQRTP---GIITIE 182 (326)
T ss_pred EEEec--CC---CccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-cC---CcceEecCC---CeEEEe
Confidence 33322 11 222222233446689999999972 467889999987542 21 244544444 689999
Q ss_pred CCCCCCCeeEEEEEEcccccce
Q psy2441 176 NSIEEDQGKYECVAENEVGTEY 197 (212)
Q Consensus 176 ~~~~~d~g~y~C~a~n~~g~~~ 197 (212)
+++.+|.|.|+|.|.|..|...
T Consensus 183 ~v~~~d~G~Y~C~~~n~~g~~~ 204 (326)
T PHA02785 183 DVRKNDAGYYTCVLKYIYGDKT 204 (326)
T ss_pred ecChhhCeEEEEEEEeccCCEE
Confidence 9999999999999999887654
No 23
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.71 E-value=2.4e-16 Score=91.88 Aligned_cols=74 Identities=31% Similarity=0.598 Sum_probs=61.3
Q ss_pred CCcEEEEEeeeeCCCCceEEEeCCEEecCCC-CCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEEEE
Q psy2441 127 SHTTVLHCSASGNPPPKISWIREMLPVDTSR-NPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205 (212)
Q Consensus 127 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v 205 (212)
|+.+.|.|.+.|.|.|.+.|++++..+.... ..++. ..+ +.|.|.++..+|+|.|.|.|.|..|..... +.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~-~~~---~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~-~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRH-VSS---GALILTDVQPSDTAVYQCEARNRHGNLLAN-AHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEE-eeC---CEEEECCCChhhCEEEEEEEECCCCeEEEE-EEEEE
Confidence 6789999999999999999999999886541 22332 223 689999999999999999999999998776 77665
No 24
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.71 E-value=3e-16 Score=93.89 Aligned_cols=83 Identities=27% Similarity=0.438 Sum_probs=67.8
Q ss_pred CCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcC--CC--CceeEEEcCCCCCCCeeEEEEEEcccccceecceE
Q psy2441 127 SHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLT--SG--APGALQITNSIEEDQGKYECVAENEVGTEYSPSTM 202 (212)
Q Consensus 127 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~--~~--~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~ 202 (212)
|+.+.|.|.+.|.|++.+.|++++..+... ..++.... .+ ..+.|.|.++..+|.|.|+|.|.|..|..... +.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~-~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~-~~ 78 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPE-MSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGI-IQ 78 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCC-CCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEE-EE
Confidence 688999999999999999999999877553 23443322 11 13689999999999999999999999999888 99
Q ss_pred EEEecceec
Q psy2441 203 LYVKGTQVD 211 (212)
Q Consensus 203 l~v~~~~~p 211 (212)
|.|++++.|
T Consensus 79 L~V~~~P~~ 87 (88)
T cd05735 79 LTVQEPPDP 87 (88)
T ss_pred EEEeCCCCC
Confidence 999887644
No 25
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.71 E-value=3.2e-16 Score=95.70 Aligned_cols=92 Identities=25% Similarity=0.464 Sum_probs=69.1
Q ss_pred CccccCCcceeEecCCcEEEEEeeeeCCCCceEEEeCCEEecCC---CCCceEEcCCCCceeEEEcCCCCCCCeeEEEEE
Q psy2441 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTS---RNPRYNLLTSGAPGALQITNSIEEDQGKYECVA 189 (212)
Q Consensus 113 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a 189 (212)
|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+... ...++....+...+.|.|.++..+|+|.|.|.|
T Consensus 3 p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A 82 (97)
T cd05869 3 PKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTA 82 (97)
T ss_pred ceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEE
Confidence 55555555555566899999999999999999999988766432 122333333333468999999999999999999
Q ss_pred EcccccceecceEEEE
Q psy2441 190 ENEVGTEYSPSTMLYV 205 (212)
Q Consensus 190 ~n~~g~~~~~~~~l~v 205 (212)
.|..|..... +.|.|
T Consensus 83 ~N~~G~~~~~-~~l~v 97 (97)
T cd05869 83 SNTIGQDSQS-MYLEV 97 (97)
T ss_pred ecCCCCeeEE-EEEEC
Confidence 9999998766 66543
No 26
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.70 E-value=2.6e-16 Score=91.57 Aligned_cols=75 Identities=25% Similarity=0.512 Sum_probs=61.1
Q ss_pred CCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEEEE
Q psy2441 127 SHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205 (212)
Q Consensus 127 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v 205 (212)
|+++.|.|.+.|.|.|.|.|++++.++............+ ..|.|.++...|.|.|.|.|.|..|..... +.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~---~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~-~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDG---DTIIFSKVQERSSAVYQCNASNEYGYLLAN-AFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecC---CEEEECCCCHhhCEEEEEEEEcCCCEEEEE-EEEEe
Confidence 6789999999999999999999999886432222222222 588999999999999999999999999877 77765
No 27
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.70 E-value=5.8e-16 Score=93.27 Aligned_cols=85 Identities=33% Similarity=0.444 Sum_probs=66.2
Q ss_pred CCcceeEecCCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccce
Q psy2441 118 APSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEY 197 (212)
Q Consensus 118 ~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~ 197 (212)
.+....+.+|+.+.|.|.+.|.|.|.+.|++++..+... .............|.|.++..+|.|.|.|.|.|..|...
T Consensus 6 ~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~--~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~ 83 (90)
T cd04972 6 GPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQT--RTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQAN 83 (90)
T ss_pred CCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCC--ccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCcee
Confidence 344455889999999999999999999999999887653 221111111236899999999999999999999999987
Q ss_pred ecceEEEE
Q psy2441 198 SPSTMLYV 205 (212)
Q Consensus 198 ~~~~~l~v 205 (212)
.. +.|.|
T Consensus 84 ~~-~~L~v 90 (90)
T cd04972 84 VS-VQVTV 90 (90)
T ss_pred EE-EEEeC
Confidence 76 66653
No 28
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.69 E-value=1.9e-16 Score=91.53 Aligned_cols=74 Identities=30% Similarity=0.435 Sum_probs=60.4
Q ss_pred EEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCC-CceeEEEcCCCCCCCeeEEEEEEcccccceecceEEEE
Q psy2441 130 TVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSG-APGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205 (212)
Q Consensus 130 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v 205 (212)
+.|.|.+.|.|.|.+.|++++..+... ..++....++ +...|.|.++..+|+|.|+|.|.|..|..... +.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~-a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHN-TDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCT-ARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCC-CCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEE-EEEeC
Confidence 479999999999999999999988754 3456554432 22379999999999999999999999999877 77654
No 29
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.69 E-value=4.9e-16 Score=95.09 Aligned_cols=91 Identities=23% Similarity=0.453 Sum_probs=68.7
Q ss_pred CccccCCcceeEecCCcEEEEEeeeeCCCCceEEEeC--CEEecCC---CCCceEEcCCCCceeEEEcCCCCCCCeeEEE
Q psy2441 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE--MLPVDTS---RNPRYNLLTSGAPGALQITNSIEEDQGKYEC 187 (212)
Q Consensus 113 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~--~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 187 (212)
|.+. .+....+.+|+.+.|.|.+.|.|.|.+.|+++ +..+... ...++..........|.|.+++.+|+|.|.|
T Consensus 3 p~i~-~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C 81 (98)
T cd05870 3 PHII-QLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDC 81 (98)
T ss_pred CEEE-eeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEE
Confidence 4444 35567788999999999999999999999994 4333221 1245555433334689999999999999999
Q ss_pred EEEcccccceecceEEEE
Q psy2441 188 VAENEVGTEYSPSTMLYV 205 (212)
Q Consensus 188 ~a~n~~g~~~~~~~~l~v 205 (212)
.|.|..|..... +.|.|
T Consensus 82 ~A~N~~G~~~~~-~~l~~ 98 (98)
T cd05870 82 EAASRIGGHQKS-MYLDI 98 (98)
T ss_pred EEeccCCcceeE-EEEeC
Confidence 999999988766 66653
No 30
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.69 E-value=4.7e-16 Score=92.57 Aligned_cols=82 Identities=35% Similarity=0.620 Sum_probs=68.1
Q ss_pred cCCcceeEecCCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccc
Q psy2441 117 EAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTE 196 (212)
Q Consensus 117 ~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~ 196 (212)
..|....+..|+.+.|.|.+.|.|.|.+.|++++..+... .++.. .+ ..|.|.++..+|+|.|.|.|.|..|..
T Consensus 4 ~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~--~~~~~-~~---~~L~i~~~~~~D~G~Y~C~a~N~~G~~ 77 (85)
T cd05728 4 KVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASE--NRIEV-EA---GDLRITKLSLSDSGMYQCVAENKHGTI 77 (85)
T ss_pred ccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCC--CeEEE-eC---CEEEEeeCCHHHCEEEEEEEECCCCeE
Confidence 4556677889999999999999999999999999987653 44443 23 589999999999999999999999998
Q ss_pred eecceEEEE
Q psy2441 197 YSPSTMLYV 205 (212)
Q Consensus 197 ~~~~~~l~v 205 (212)
... +.|.|
T Consensus 78 ~~~-~~l~V 85 (85)
T cd05728 78 YAS-AELAV 85 (85)
T ss_pred EEE-EEEEC
Confidence 766 66543
No 31
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.69 E-value=4.1e-16 Score=90.16 Aligned_cols=73 Identities=33% Similarity=0.588 Sum_probs=62.5
Q ss_pred CCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEEEE
Q psy2441 127 SHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205 (212)
Q Consensus 127 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v 205 (212)
|+.+.|.|.+.+.|.|.+.|++++..+... .++....+ ..|.|.+++.+|.|.|.|.|.|..|..... +.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~--~~~~~~~~---~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~-~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNS--SRICIWPD---GSLEILNVTKSDEGKYTCFAENFFGKANST-GSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccC--CCEEECCC---CeEEEccCChhHCEEEEEEEECCCCceEEE-EEEEC
Confidence 678999999999999999999999887653 55655555 689999999999999999999999998776 66653
No 32
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.69 E-value=2.7e-16 Score=88.42 Aligned_cols=66 Identities=21% Similarity=0.314 Sum_probs=56.0
Q ss_pred EEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEEEEe
Q psy2441 130 TVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206 (212)
Q Consensus 130 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v~ 206 (212)
+.|.|.+.|.|.|.+.|+|+|..+... .. ...|.|.++..+|+|.|+|.|.|..|..... +.+.+.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~-------~~---~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~-~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK-------HS---QHSLQIKDVTEASAGTYTLVLWNSAAGLEKR-ISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc-------CC---cCEEEECCCCHHHCEEEEEEEEECCccEEEE-EEEEEE
Confidence 468999999999999999999988632 11 2699999999999999999999999987766 777664
No 33
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.69 E-value=7.1e-16 Score=92.55 Aligned_cols=86 Identities=31% Similarity=0.500 Sum_probs=69.1
Q ss_pred CccccCCcceeEecCCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcc
Q psy2441 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENE 192 (212)
Q Consensus 113 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~ 192 (212)
+.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+... .... ..+ ..|.|.+++.+|+|.|.|.|.|.
T Consensus 2 ~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~--~~~~-~~~---~~L~i~~v~~~D~G~Y~C~a~N~ 75 (88)
T cd04968 2 SIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSS--AEIS-MSG---AVLKIPNIQFEDEGTYECEAENI 75 (88)
T ss_pred CcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCc--cEEE-EeC---CEEEECCCCcccCEEEEEEEEEC
Confidence 44455666777889999999999999999999999988765442 2222 222 78999999999999999999999
Q ss_pred cccceecceEEEE
Q psy2441 193 VGTEYSPSTMLYV 205 (212)
Q Consensus 193 ~g~~~~~~~~l~v 205 (212)
.|..... +.|.|
T Consensus 76 ~G~~~~~-~~l~V 87 (88)
T cd04968 76 KGKDTHQ-GRIYV 87 (88)
T ss_pred CCcEEEE-EEEEE
Confidence 9998777 77766
No 34
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.69 E-value=6.3e-16 Score=92.90 Aligned_cols=81 Identities=28% Similarity=0.441 Sum_probs=67.0
Q ss_pred CcceeEecCCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEccccccee
Q psy2441 119 PSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYS 198 (212)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~ 198 (212)
+....+.+|+++.|.|.+.+. .|.+.|++++..+.. .++....++ ..|.|.++..+|+|.|.|.|.|..|...+
T Consensus 10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~---~~~~~~~~~--~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S 83 (91)
T cd05740 10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVP---PRLQLSNDN--RTLTFNNVTRSDTGHYQCEASNEVSNMTS 83 (91)
T ss_pred cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCC---CCEEEeCCC--CEEEECcCChhhCEEEEEEEEcCCCCEEe
Confidence 344678899999999999999 999999999988754 334444333 68999999999999999999999999877
Q ss_pred cceEEEE
Q psy2441 199 PSTMLYV 205 (212)
Q Consensus 199 ~~~~l~v 205 (212)
..+.|.|
T Consensus 84 ~~~~L~V 90 (91)
T cd05740 84 DPYILNV 90 (91)
T ss_pred eeEEEEe
Confidence 6577766
No 35
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.68 E-value=5.3e-16 Score=89.83 Aligned_cols=74 Identities=58% Similarity=0.992 Sum_probs=61.3
Q ss_pred EEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEEEEe
Q psy2441 130 TVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206 (212)
Q Consensus 130 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v~ 206 (212)
+.|.|.+.|.|.|.+.|++++..+......++....+ +.|.|.++..+|+|.|.|.|.|..|...+..+.|.|+
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~---g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~ 74 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRS---GALQIENSEESDQGKYECVATNSAGTRYSAPANLYVR 74 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCC---cEEEECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence 3689999999999999999998876433456655554 6899999999999999999999999876555777764
No 36
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.68 E-value=4.7e-16 Score=89.29 Aligned_cols=71 Identities=27% Similarity=0.640 Sum_probs=59.0
Q ss_pred cEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEEEE
Q psy2441 129 TTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205 (212)
Q Consensus 129 ~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v 205 (212)
++.|.|.+.|.|.|.+.|++++..+... .++....+ ..|.|.++..+|+|.|.|.|.|..|..... +.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~--~~~~~~~~---~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~-~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPS--DYFKIVKE---HNLQVLGLVKSDEGFYQCIAENDVGNVQAS-AQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCC--CCEEEEec---CCEEEEcCCcccCEEEEEEEEcCCCEEEEE-EEEEC
Confidence 4789999999999999999999887654 44555444 578888999999999999999999998776 66653
No 37
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.68 E-value=7.2e-16 Score=94.33 Aligned_cols=85 Identities=18% Similarity=0.310 Sum_probs=67.8
Q ss_pred ceeEecCCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcC-----CCCceeEEEcCCCCCCCeeEEEEEEccccc
Q psy2441 121 TKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLT-----SGAPGALQITNSIEEDQGKYECVAENEVGT 195 (212)
Q Consensus 121 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~ 195 (212)
...+..|+.+.|.|.+.|.|.|.+.|++++.++.... ..+.... ....++|.|.++..+|+|.|+|.|.|..|.
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~-~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~ 90 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENL-TEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV 90 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCc-ceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence 4667889999999999999999999999999987641 1111111 112368999999999999999999999999
Q ss_pred ceecceEEEEec
Q psy2441 196 EYSPSTMLYVKG 207 (212)
Q Consensus 196 ~~~~~~~l~v~~ 207 (212)
.... +.|.|++
T Consensus 91 ~~~t-~~l~V~v 101 (101)
T cd05859 91 KSYT-FALQIQV 101 (101)
T ss_pred EEEE-EEEEEEC
Confidence 8777 7777754
No 38
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.68 E-value=7.5e-16 Score=90.18 Aligned_cols=76 Identities=32% Similarity=0.492 Sum_probs=62.7
Q ss_pred CCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEEEE
Q psy2441 127 SHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205 (212)
Q Consensus 127 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v 205 (212)
|+.+.|.|.+.|.|.|.+.|++++..+... .++..........|.|.++..+|.|.|.|.|.|..|..... ..+.+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~--~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~-~~~~~ 76 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDS--ARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGI-PDGIL 76 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCC--CCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEec-ccEEE
Confidence 678999999999999999999998877653 45555444444789999999999999999999999988776 55544
No 39
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.68 E-value=1.2e-15 Score=93.16 Aligned_cols=90 Identities=24% Similarity=0.442 Sum_probs=68.7
Q ss_pred CccccCCcceeEecCCcEEEEEeeeeCCCCceEEEeCCEEecCC---CCCceEEcCCCCceeEEEcCCCCCCCeeEEEEE
Q psy2441 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTS---RNPRYNLLTSGAPGALQITNSIEEDQGKYECVA 189 (212)
Q Consensus 113 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a 189 (212)
|.+. .+....+.+|+.+.|.|.+.+.|.|.+.|++++..+... ...++..........|.|.++..+|.|.|.|.|
T Consensus 3 P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 81 (96)
T cd05732 3 PKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEA 81 (96)
T ss_pred ccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEE
Confidence 5554 344567888999999999999999999999988655432 123444433333478999999999999999999
Q ss_pred EcccccceecceEEE
Q psy2441 190 ENEVGTEYSPSTMLY 204 (212)
Q Consensus 190 ~n~~g~~~~~~~~l~ 204 (212)
.|..|..... +.|.
T Consensus 82 ~N~~G~~~~s-~~l~ 95 (96)
T cd05732 82 SNRIGGDQQS-MYLE 95 (96)
T ss_pred EeCCCCcEEE-EEEe
Confidence 9999998655 5554
No 40
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.68 E-value=9.9e-16 Score=92.82 Aligned_cols=86 Identities=22% Similarity=0.444 Sum_probs=64.9
Q ss_pred CCcceeEecCCcEEEEEeeeeCCC-CceEEEe-CCEEecCCCCCceEEcC-CCCceeEEEcCCCCCCCeeEEEEEEccc-
Q psy2441 118 APSTKVVEISHTTVLHCSASGNPP-PKISWIR-EMLPVDTSRNPRYNLLT-SGAPGALQITNSIEEDQGKYECVAENEV- 193 (212)
Q Consensus 118 ~~~~~~~~~g~~~~l~C~~~~~p~-~~i~W~~-~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~a~n~~- 193 (212)
.|....+..|+.+.|.|.+.|.|. |.+.|++ ++..+... ..++.... ++..++|.|.++..+|+|.|+|.|.|..
T Consensus 6 ~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~-~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~ 84 (96)
T cd05865 6 VPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPN-QQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDE 84 (96)
T ss_pred eCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCcccc-CCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCC
Confidence 445556788999999999999995 7999998 67655442 23444332 2234789999999999999999999997
Q ss_pred ccceecceEEEE
Q psy2441 194 GTEYSPSTMLYV 205 (212)
Q Consensus 194 g~~~~~~~~l~v 205 (212)
|..... +.|.|
T Consensus 85 g~~~~s-~~l~v 95 (96)
T cd05865 85 GESEAT-VNVKI 95 (96)
T ss_pred CcEEEE-EEEEE
Confidence 776655 66554
No 41
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.67 E-value=9.3e-16 Score=89.52 Aligned_cols=75 Identities=27% Similarity=0.469 Sum_probs=61.3
Q ss_pred CCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEEEE
Q psy2441 127 SHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205 (212)
Q Consensus 127 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v 205 (212)
|+.+.|.|.+.|.|.|.+.|++++..+............+ ..|.|.+++.+|+|.|.|.|.|..|..... +.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~---~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~-~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDG---GTLILSNVQPNDTAVYQCNASNVHGYLLAN-AFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccC---CEEEECCCChhhCEEEEEEEEccCCeEEEe-EEEEE
Confidence 6789999999999999999999998887642211222222 789999999999999999999999998877 77765
No 42
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.67 E-value=1.2e-15 Score=91.63 Aligned_cols=86 Identities=24% Similarity=0.422 Sum_probs=67.0
Q ss_pred cCCcceeEecCCcEEEEEeeeeCCCCceEEEe-CCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEccccc
Q psy2441 117 EAPSTKVVEISHTTVLHCSASGNPPPKISWIR-EMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGT 195 (212)
Q Consensus 117 ~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~ 195 (212)
..+....+.+|+.+.|.|.+.|.|. .+.|++ ++..+... .++....++....|.|.++..+|+|.|.|.|.|..|.
T Consensus 5 ~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~--~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 81 (92)
T cd05866 5 ISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSS--QRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQ 81 (92)
T ss_pred EEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCC--CCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCc
Confidence 3455567888999999999999998 899998 46665443 5666555543468999999999999999999999998
Q ss_pred ceecceEEEE
Q psy2441 196 EYSPSTMLYV 205 (212)
Q Consensus 196 ~~~~~~~l~v 205 (212)
....++.|.+
T Consensus 82 ~~~~~i~l~~ 91 (92)
T cd05866 82 TQEATVVLEI 91 (92)
T ss_pred EEEEEEEEEE
Confidence 7654355543
No 43
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.67 E-value=1.2e-15 Score=91.23 Aligned_cols=82 Identities=35% Similarity=0.683 Sum_probs=67.2
Q ss_pred CcceeEecCCcEEEEEee-eeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccce
Q psy2441 119 PSTKVVEISHTTVLHCSA-SGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEY 197 (212)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~ 197 (212)
|....+.+|+.+.|.|.+ .+.|.|.+.|++++..+... ..++....+ +.|.|.+++.+|+|.|.|.|.|..|...
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~-~~~~~~~~~---~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 78 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLD-NERVRIVDD---GNLLIAEARKSDEGTYKCVATNMVGERE 78 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCC-CCCEEEccC---CEEEEeECCcccCEEEEEEEEeccCcee
Confidence 455678889999999998 78999999999999887764 345555544 6899999999999999999999999876
Q ss_pred ecceEEE
Q psy2441 198 SPSTMLY 204 (212)
Q Consensus 198 ~~~~~l~ 204 (212)
+..+.|.
T Consensus 79 s~~~~l~ 85 (86)
T cd05724 79 SAAARLS 85 (86)
T ss_pred eeeEEEE
Confidence 6545554
No 44
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.67 E-value=1.1e-15 Score=88.58 Aligned_cols=74 Identities=27% Similarity=0.475 Sum_probs=60.1
Q ss_pred cEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEEEE
Q psy2441 129 TTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205 (212)
Q Consensus 129 ~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v 205 (212)
.+.|.|.+.|.|.|.+.|++++..+... .++..........|.|.++..+|+|.|.|.|.|..|..... +.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~--~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~-~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLS--GRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSAT-INVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCC--CeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEE-EEEEC
Confidence 3689999999999999999999988554 44444433334789999999999999999999999998766 65543
No 45
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.66 E-value=1.4e-15 Score=88.74 Aligned_cols=73 Identities=25% Similarity=0.552 Sum_probs=57.5
Q ss_pred EEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEEEEe
Q psy2441 130 TVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206 (212)
Q Consensus 130 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v~ 206 (212)
+.|.|.+.|.|.|.+.|++++..+... ..++...... ..|.|.++..+|+|.|.|.|.|..|..... ..+.|.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~-~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~-~~~~l~ 73 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDG-QGNYSVSSKE--RTLTLRSAGPDDSGLYYCCAHNAFGSVCSS-QNFTLS 73 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCC-CccEEEeCCC--CEEEEeeCCcccCEEEEEEEEeCCCeEeeC-ceEEEE
Confidence 479999999999999999999987654 2334343332 689999999999999999999999987654 444443
No 46
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.66 E-value=2.5e-15 Score=91.06 Aligned_cols=87 Identities=33% Similarity=0.697 Sum_probs=64.6
Q ss_pred CccccCCcceeEe---cCCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCC-CCCCeeEEEE
Q psy2441 113 PQITEAPSTKVVE---ISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSI-EEDQGKYECV 188 (212)
Q Consensus 113 p~~~~~~~~~~~~---~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~ 188 (212)
|.|...+....+. +|+.+.|.|.+.|.|.|.+.|++++..+......++.. .+ +.|.|.++. .+|.|.|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~-~~---g~L~i~~~~~~~D~G~Y~C~ 77 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSL-ID---GNLIISNPSEVKDSGRYQCL 77 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEe-eC---CeEEEccCCccCcCEEEEEE
Confidence 4445555554333 47899999999999999999999999886542333332 23 578888875 6999999999
Q ss_pred EEcccccceecceEE
Q psy2441 189 AENEVGTEYSPSTML 203 (212)
Q Consensus 189 a~n~~g~~~~~~~~l 203 (212)
|.|..|...+..+.|
T Consensus 78 A~N~~G~~~S~~~~l 92 (94)
T cd05848 78 ATNSIGSILSREALL 92 (94)
T ss_pred EEcCCCeEEeccEEE
Confidence 999999887653443
No 47
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.66 E-value=1.5e-15 Score=92.47 Aligned_cols=86 Identities=37% Similarity=0.640 Sum_probs=66.6
Q ss_pred cCCcceeEecCCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCC-----CCCCCeeEEEEEEc
Q psy2441 117 EAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNS-----IEEDQGKYECVAEN 191 (212)
Q Consensus 117 ~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~g~y~C~a~n 191 (212)
..|....+.+|+++.|.|.+.+.|.|.+.|++++..+......+.....+ +.+.|.++ ...|.|.|.|.|.|
T Consensus 4 ~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~---~~l~i~~v~~~~~~~~D~G~Y~C~a~N 80 (95)
T cd05722 4 SEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPN---GSLLITSVVHSKHNKPDEGFYQCVAQN 80 (95)
T ss_pred ECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccC---CeEEEeeeeccCCCCCcCEEEEEEEEC
Confidence 45566677889999999999999999999999999887653334444444 45666665 57899999999999
Q ss_pred c-cccceecceEEEE
Q psy2441 192 E-VGTEYSPSTMLYV 205 (212)
Q Consensus 192 ~-~g~~~~~~~~l~v 205 (212)
. .|...+..+.|.|
T Consensus 81 ~~~G~~~s~~~~l~v 95 (95)
T cd05722 81 DSLGSIVSRTARLTV 95 (95)
T ss_pred CccCcEEEeeeEEeC
Confidence 9 9988665466543
No 48
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.66 E-value=3e-15 Score=90.71 Aligned_cols=87 Identities=31% Similarity=0.553 Sum_probs=65.3
Q ss_pred CccccCCcceeEecC---CcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCC-CCCCeeEEEE
Q psy2441 113 PQITEAPSTKVVEIS---HTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSI-EEDQGKYECV 188 (212)
Q Consensus 113 p~~~~~~~~~~~~~g---~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~ 188 (212)
|.|...|....+.+| +.+.|.|.+.|+|.|.+.|++++..+......++... + +.|.|.++. ..|.|.|.|.
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~---g~L~I~~~~~~~D~G~Y~C~ 77 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLV-A---GNLVINNPQKARDAGSYQCL 77 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEE-C---CeEEEccCCccCcCEEEEEE
Confidence 445555666555444 5799999999999999999999998875423344433 3 578888765 5999999999
Q ss_pred EEcccccceecceEE
Q psy2441 189 AENEVGTEYSPSTML 203 (212)
Q Consensus 189 a~n~~g~~~~~~~~l 203 (212)
|.|..|...+..+.|
T Consensus 78 A~N~~G~~~s~~a~l 92 (94)
T cd05850 78 AINRCGTVVSREANL 92 (94)
T ss_pred EEcCcCcEEEEEEEE
Confidence 999999887653443
No 49
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.66 E-value=2.6e-15 Score=90.60 Aligned_cols=84 Identities=26% Similarity=0.472 Sum_probs=66.4
Q ss_pred CCcceeEecCCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEc-CCCCceeEEEcCCCCCCCeeEEEEEEcccccc
Q psy2441 118 APSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLL-TSGAPGALQITNSIEEDQGKYECVAENEVGTE 196 (212)
Q Consensus 118 ~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~ 196 (212)
.|....+.+|+.+.|.|.+.+.|.|.+.|++++..+... .++... .++...+|.|.++..+|+|.|.|.|.|..|..
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 84 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELS--EHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGE 84 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCC--CCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCce
Confidence 344567889999999999999999999999999887654 333332 22223589999999999999999999999998
Q ss_pred eecceEEE
Q psy2441 197 YSPSTMLY 204 (212)
Q Consensus 197 ~~~~~~l~ 204 (212)
... +.|.
T Consensus 85 ~~~-~~v~ 91 (92)
T cd05891 85 TVD-VTVS 91 (92)
T ss_pred eeE-EEEE
Confidence 755 5544
No 50
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.66 E-value=1.6e-15 Score=90.46 Aligned_cols=81 Identities=27% Similarity=0.532 Sum_probs=64.4
Q ss_pred eeEecCCcEEEEEeeeeCCCCceEEEeCCEEecCCCC-CceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecc
Q psy2441 122 KVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRN-PRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPS 200 (212)
Q Consensus 122 ~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~ 200 (212)
..+.+|+.+.|.|.+.|.|.|.+.|++++..+..... ..+..... ...|.|.++..+|+|.|.|.|.|..|.....
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~--~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~- 80 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQ--HWSLIMESVVPSDKGNYTCVVENEYGSINHT- 80 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCC--ceEEEEccCCcccCEEEEEEEEeCCCEEEEE-
Confidence 4467899999999999999999999999998875411 11222222 2689999999999999999999999998776
Q ss_pred eEEEE
Q psy2441 201 TMLYV 205 (212)
Q Consensus 201 ~~l~v 205 (212)
+.|.|
T Consensus 81 ~~l~v 85 (85)
T cd05857 81 YHLDV 85 (85)
T ss_pred EEEEC
Confidence 66654
No 51
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.66 E-value=2e-15 Score=87.55 Aligned_cols=74 Identities=31% Similarity=0.416 Sum_probs=59.5
Q ss_pred EEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCC-CCceeEEEcCCCCCCCeeEEEEEEcccccceecceEEEE
Q psy2441 130 TVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTS-GAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205 (212)
Q Consensus 130 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v 205 (212)
+.|.|.+.|.|.|.+.|++++..+... ..++....+ .+..+|.|.++..+|+|.|+|.|.|..|..... +.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~-~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~-~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYN-TDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCN-ARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCC-CCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEE-EEEeC
Confidence 479999999999999999999888753 245544333 223479999999999999999999999998877 66653
No 52
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.65 E-value=1.2e-15 Score=87.12 Aligned_cols=68 Identities=35% Similarity=0.691 Sum_probs=57.7
Q ss_pred EEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEE
Q psy2441 130 TVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTML 203 (212)
Q Consensus 130 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l 203 (212)
+.|.|.+.|.|.|.+.|++++..+... .++....+ +.|.|.++..+|+|.|.|.|.|..|..... +.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~--~~~~~~~~---~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~-~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTES--GKFHISPE---GYLAIRDVGVADQGRYECVARNTIGYASVS-MVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCC--CCEEECCC---CEEEECcCChhhCEEEEEEEECCCCcEEEE-EEe
Confidence 479999999999999999999887653 55655555 789999999999999999999999998765 544
No 53
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.65 E-value=4.8e-15 Score=91.25 Aligned_cols=93 Identities=33% Similarity=0.593 Sum_probs=67.4
Q ss_pred CccccCCcceeEecCCcEEEEEeeeeCCCCceEEEeCCEEecCC---CCCceEEcCCCCceeEEEc--CCCCCCCeeEEE
Q psy2441 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTS---RNPRYNLLTSGAPGALQIT--NSIEEDQGKYEC 187 (212)
Q Consensus 113 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~---~~~~~~~~~~~~~~~l~i~--~~~~~d~g~y~C 187 (212)
|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+... ...+.....++....+.+. .+..+|+|.|.|
T Consensus 2 P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C 81 (100)
T cd07693 2 PRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVC 81 (100)
T ss_pred CeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEE
Confidence 67777788888999999999999999999999999999888652 1122222333211222222 236899999999
Q ss_pred EEEcccccceecceEEEE
Q psy2441 188 VAENEVGTEYSPSTMLYV 205 (212)
Q Consensus 188 ~a~n~~g~~~~~~~~l~v 205 (212)
.|.|..|...+..+.|.|
T Consensus 82 ~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 82 VAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEccccceecceEEEEe
Confidence 999999996555466655
No 54
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.63 E-value=2.4e-15 Score=86.37 Aligned_cols=70 Identities=36% Similarity=0.604 Sum_probs=56.3
Q ss_pred EEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEEEE
Q psy2441 130 TVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205 (212)
Q Consensus 130 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v 205 (212)
+.|.|.+.|.|.|.+.|++++..+... +...... ...|.|.++..+|.|.|.|.|.|..|..... +.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~---~~~~~~~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~-~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPN---RTKKLNN--NKTLQLDNVLESDDGEYVCTAENSEGSARHH-YTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCC---ceeEEcC--CCEEEEcccCHHhCEEEEEEEEcCCCeEEEE-EEEEE
Confidence 468999999999999999998766542 1122222 2799999999999999999999999998766 77665
No 55
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.63 E-value=6.5e-15 Score=87.42 Aligned_cols=80 Identities=28% Similarity=0.526 Sum_probs=62.6
Q ss_pred CcEEEEEeeeeCCCC--ceEEEeCCEEecCC-CCCceEEc-CCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEE
Q psy2441 128 HTTVLHCSASGNPPP--KISWIREMLPVDTS-RNPRYNLL-TSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTML 203 (212)
Q Consensus 128 ~~~~l~C~~~~~p~~--~i~W~~~~~~~~~~-~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l 203 (212)
+.+.|.|.+.|.|.| .+.|++++..+... ...++... .....+.|.|.+++..|+|.|+|.|.|..|..... +.|
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~-~~L 79 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASAS-ATL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEE-EEE
Confidence 367899999999987 57999999888653 12333221 11123799999999999999999999999999888 888
Q ss_pred EEecc
Q psy2441 204 YVKGT 208 (212)
Q Consensus 204 ~v~~~ 208 (212)
.|.++
T Consensus 80 ~V~~~ 84 (85)
T cd05854 80 VVRGP 84 (85)
T ss_pred EEECC
Confidence 88875
No 56
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.63 E-value=3.7e-15 Score=89.78 Aligned_cols=78 Identities=31% Similarity=0.511 Sum_probs=64.2
Q ss_pred CCcEEEEEeeeeCCCCceEEEeCCEEecC------CCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecc
Q psy2441 127 SHTTVLHCSASGNPPPKISWIREMLPVDT------SRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPS 200 (212)
Q Consensus 127 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~ 200 (212)
|+.+.|.|.+.+.|.|.+.|++++..... ....++....+ +.|.|.++..+|+|.|.|.|.|..|.....
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~- 76 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQT---GDLTITNVQRSDVGYYICQTLNVAGSILTK- 76 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCC---CeEEEeeCChhhCEEEEEEEEcCCCceEEE-
Confidence 67899999999999999999998764311 11345655544 689999999999999999999999999888
Q ss_pred eEEEEecc
Q psy2441 201 TMLYVKGT 208 (212)
Q Consensus 201 ~~l~v~~~ 208 (212)
+.|.|.+.
T Consensus 77 ~~l~V~~~ 84 (90)
T cd05726 77 AYLEVTDV 84 (90)
T ss_pred EEEEEeec
Confidence 99998875
No 57
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.63 E-value=2.9e-15 Score=85.20 Aligned_cols=69 Identities=20% Similarity=0.353 Sum_probs=57.4
Q ss_pred EEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEEEEe
Q psy2441 130 TVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206 (212)
Q Consensus 130 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v~ 206 (212)
+.|.|.+.|.|.|.+.|++++.++... .++ ..+ ..|.|.++..+|+|.|+|.|.|..|..... .++.+.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~--~~~--~~~---~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~-~t~~l~ 69 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLN--HTF--KRG---VHLTIYEVTEKDAGNYTVVLTNPITKEEQR-HTFQLV 69 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCC--CEE--ccC---CEEEECcCCHHHCEEEEEEEEECCCceeeE-EEEEEE
Confidence 368999999999999999999988653 222 222 689999999999999999999999988776 776664
No 58
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.63 E-value=8.4e-15 Score=89.61 Aligned_cols=89 Identities=29% Similarity=0.512 Sum_probs=68.1
Q ss_pred CccccCCcceeEecCCcEEEEEeeeeCCCC-ceEEEeCCEEecCCCCCceEEcCC----CCceeEEEcCCCCCC-CeeEE
Q psy2441 113 PQITEAPSTKVVEISHTTVLHCSASGNPPP-KISWIREMLPVDTSRNPRYNLLTS----GAPGALQITNSIEED-QGKYE 186 (212)
Q Consensus 113 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d-~g~y~ 186 (212)
|.+. .+....+.+|+.+.|.|.+.|.|.| .+.|++++..+......++..... +..++|.|.++..+| .|.|.
T Consensus 3 p~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~ 81 (98)
T cd05758 3 PIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYN 81 (98)
T ss_pred CeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEE
Confidence 4443 3445667889999999999999999 699999998887643345544332 123589999999855 89999
Q ss_pred EEEEcccccceecceEE
Q psy2441 187 CVAENEVGTEYSPSTML 203 (212)
Q Consensus 187 C~a~n~~g~~~~~~~~l 203 (212)
|.|.|..|.+... +.|
T Consensus 82 C~A~N~~G~~~~~-~~L 97 (98)
T cd05758 82 CTAWNSFGSGTAI-ISL 97 (98)
T ss_pred EEEEcCCCcccEE-EEe
Confidence 9999999998765 544
No 59
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.63 E-value=4.9e-15 Score=87.16 Aligned_cols=81 Identities=21% Similarity=0.351 Sum_probs=64.7
Q ss_pred CcEEEEEeeee--CCCCceEEEeCCEEecCC-CCCceEEcCC-CCceeEEEcCCCCCCCeeEEEEEEcccccceecceEE
Q psy2441 128 HTTVLHCSASG--NPPPKISWIREMLPVDTS-RNPRYNLLTS-GAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTML 203 (212)
Q Consensus 128 ~~~~l~C~~~~--~p~~~i~W~~~~~~~~~~-~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l 203 (212)
+++.|.|.+.+ .+.+.+.|++|+..+... ...++..... ...+.|.|.+++..|+|.|+|.|.|..+..... +.|
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~-a~L 79 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAA-ADL 79 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEE-EEE
Confidence 46889999977 447799999999999742 2345555321 112689999999999999999999999999988 999
Q ss_pred EEecce
Q psy2441 204 YVKGTQ 209 (212)
Q Consensus 204 ~v~~~~ 209 (212)
.|++++
T Consensus 80 ~V~~pP 85 (85)
T cd05853 80 IVRGPP 85 (85)
T ss_pred EEecCC
Confidence 998764
No 60
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.62 E-value=6.9e-15 Score=88.78 Aligned_cols=86 Identities=30% Similarity=0.551 Sum_probs=63.7
Q ss_pred CccccCCcceeEec---CCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCC-CCCCeeEEEE
Q psy2441 113 PQITEAPSTKVVEI---SHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSI-EEDQGKYECV 188 (212)
Q Consensus 113 p~~~~~~~~~~~~~---g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~ 188 (212)
|.|...|....+.+ |..+.|.|.+.|+|.|.+.|++++..+... ..++.. .+ +.|.|.++. .+|+|.|.|.
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~-~~~~~~-~~---g~L~I~~~~~~~D~G~Y~C~ 76 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLT-NDRYSM-VG---GNLVINNPDKYKDAGRYVCI 76 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCC-CCeEEE-EC---CEEEECcCCcCCCCEEEEEE
Confidence 34444444443333 447999999999999999999999887543 234433 23 689999885 6899999999
Q ss_pred EEcccccceecceEE
Q psy2441 189 AENEVGTEYSPSTML 203 (212)
Q Consensus 189 a~n~~g~~~~~~~~l 203 (212)
|.|..|...+..+.|
T Consensus 77 A~N~~G~~~s~~a~l 91 (93)
T cd05849 77 VSNIYGKVRSREATL 91 (93)
T ss_pred EEeCcceEEEccEEE
Confidence 999999987754554
No 61
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.62 E-value=7.3e-15 Score=84.22 Aligned_cols=70 Identities=23% Similarity=0.369 Sum_probs=57.5
Q ss_pred EEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEEEEe
Q psy2441 130 TVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206 (212)
Q Consensus 130 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v~ 206 (212)
+.|.|.+.|.|.|.+.|++++..+... .++. ... ..|.|.++..+|+|.|+|.|.|..|..... +.+.+.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~--~~~~-~~~---~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~-~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEK--NRTK-KSG---HSLTIKDVTEEDAGNYTVVLTNKQAKLEKR-LTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCC--CEEE-cCC---CEEEECcCCHHHCEEEEEEEEcCCccEEEE-EEEEEE
Confidence 468999999999999999999988764 3332 222 789999999999999999999999987666 666654
No 62
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.62 E-value=1.9e-14 Score=89.52 Aligned_cols=82 Identities=28% Similarity=0.469 Sum_probs=63.6
Q ss_pred cCCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEE--cCCC--CceeEEEcCCC-CCCCeeEEEEEEcccccceecc
Q psy2441 126 ISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNL--LTSG--APGALQITNSI-EEDQGKYECVAENEVGTEYSPS 200 (212)
Q Consensus 126 ~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~--~~~~--~~~~l~i~~~~-~~d~g~y~C~a~n~~g~~~~~~ 200 (212)
.|+.+.|.|.+.|.|.+.+.|++++..+... ..++.. ...+ ..+.|.|.++. .+|.|.|.|.|.|..|.....
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~-~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~- 99 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLG-NPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLD- 99 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECCCC-CCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEE-
Confidence 4678999999999999999999999888643 234432 1211 13689999997 589999999999999999766
Q ss_pred eEEEEecce
Q psy2441 201 TMLYVKGTQ 209 (212)
Q Consensus 201 ~~l~v~~~~ 209 (212)
+.|.+..++
T Consensus 100 i~L~~~~~p 108 (109)
T cd05773 100 IQLVSTSRP 108 (109)
T ss_pred EEEEecCCC
Confidence 777776543
No 63
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.61 E-value=4.1e-15 Score=85.00 Aligned_cols=69 Identities=32% Similarity=0.566 Sum_probs=56.7
Q ss_pred EEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEEEE
Q psy2441 130 TVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205 (212)
Q Consensus 130 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v 205 (212)
+.|.|.+.|.|.|.+.|++++..++. .++....+ ..|.|.++..+|+|.|.|.|.|..|..... +.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~---~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~-~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPK---GRAEILDD---KSLKIRNVTAGDEGSYTCEAENMVGKIEAS-ASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCC---CcEEEeeC---CEEEECcCChhHCEEEEEEEEcCCCcEEEE-EEEEC
Confidence 47899999999999999999776543 34444444 689999999999999999999999988766 66543
No 64
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.61 E-value=5.9e-15 Score=85.77 Aligned_cols=73 Identities=29% Similarity=0.542 Sum_probs=57.3
Q ss_pred EEEEEeeeeCCCCceEEEeCCEEec-CCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEEEE
Q psy2441 130 TVLHCSASGNPPPKISWIREMLPVD-TSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205 (212)
Q Consensus 130 ~~l~C~~~~~p~~~i~W~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v 205 (212)
+.|.|.+.|.|.|.+.|++++.... .....++.....+ ..|.|.++..+|+|.|.|.|.|..|..... +.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~-~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPED--DVFFIVDVKIEDTGVYSCTAQNTAGSISAN-ATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCC--CEEEEeeCCcccCEEEEEEEEcCCCEEEee-EEEEE
Confidence 3689999999999999999876432 2223344443333 689999999999999999999999998777 77766
No 65
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.61 E-value=1.3e-14 Score=84.55 Aligned_cols=75 Identities=31% Similarity=0.686 Sum_probs=61.9
Q ss_pred EEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEEEEec
Q psy2441 130 TVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207 (212)
Q Consensus 130 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v~~ 207 (212)
+.|.|.+.|.|.|.+.|++++..+......++....++ ..|.|.++..+|.|.|.|.|.|..|..... +.|.|+.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~--~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~-~~l~V~~ 75 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANG--SELHISNVRYEDTGAYTCIAKNEAGVDEDI-SSLFVED 75 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCC--CEEEECcCCcccCEEEEEEEEcCCCCcceE-EEEEEEc
Confidence 36899999999999999999988765433455544443 579999999999999999999999999877 8888763
No 66
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.61 E-value=1.3e-14 Score=85.01 Aligned_cols=77 Identities=25% Similarity=0.451 Sum_probs=60.0
Q ss_pred cCCcceeEecCCcEEEEEeeeeCCCC-ceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEccccc
Q psy2441 117 EAPSTKVVEISHTTVLHCSASGNPPP-KISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGT 195 (212)
Q Consensus 117 ~~~~~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~ 195 (212)
..|.+..+.+|+.+.|.|.+.|.|.| .|.|++++.++... .. .. .+.|.|..+ .|.|.|.|.|.|..|.
T Consensus 3 ~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~----~~-~~---~s~L~i~~~--~d~g~Y~C~A~N~~G~ 72 (81)
T cd05749 3 VEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP----PA-PS---PSVLNVPGL--NETSKFSCEAHNAKGV 72 (81)
T ss_pred CCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC----CC-CC---CCEEEEccc--cCCeEEEEEEEeccCc
Confidence 35666788999999999999999999 79999999887541 11 11 167888876 4789999999999998
Q ss_pred ceecceEE
Q psy2441 196 EYSPSTML 203 (212)
Q Consensus 196 ~~~~~~~l 203 (212)
..+..++|
T Consensus 73 ~~s~~a~~ 80 (81)
T cd05749 73 TTSRTGTV 80 (81)
T ss_pred EEeeeEEe
Confidence 77643443
No 67
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.61 E-value=1.1e-14 Score=87.53 Aligned_cols=79 Identities=23% Similarity=0.474 Sum_probs=57.9
Q ss_pred CCcEEEEEeeeeCCCCceEEEeCC----EEecCCCCCceEEcC-------CCCceeEEEcCCCCCCCeeEEEEEEccccc
Q psy2441 127 SHTTVLHCSASGNPPPKISWIREM----LPVDTSRNPRYNLLT-------SGAPGALQITNSIEEDQGKYECVAENEVGT 195 (212)
Q Consensus 127 g~~~~l~C~~~~~p~~~i~W~~~~----~~~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~ 195 (212)
|+.+.|.|.+.+.|.|.|.|++++ ..+............ .+....|.|.+++.+|+|.|.|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 678999999999999999999964 222211111111111 111257999999999999999999999999
Q ss_pred ceecceEEEEe
Q psy2441 196 EYSPSTMLYVK 206 (212)
Q Consensus 196 ~~~~~~~l~v~ 206 (212)
.... +.|.|+
T Consensus 81 ~~~s-a~L~V~ 90 (90)
T cd04974 81 SHHS-AWLTVL 90 (90)
T ss_pred ccCC-EEEEeC
Confidence 9887 888774
No 68
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.60 E-value=1.6e-14 Score=84.66 Aligned_cols=73 Identities=18% Similarity=0.415 Sum_probs=59.4
Q ss_pred cceeEecCCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceec
Q psy2441 120 STKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSP 199 (212)
Q Consensus 120 ~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~ 199 (212)
....+.+|+.+.|.|.+.+. .+.+.|++++..+... .++... + ..|.|.++..+|+|.|.|.|.|..|.....
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~--~~~~~~-~---~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~ 74 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGEN--NRTRIT-G---EEVQIKDAVPRDSGLYACVTSSPSGSDTTY 74 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCC--ceEEEe-C---CEEEECCCChhhCEEEEEEEeCCCCcccEE
Confidence 34567889999999999886 5689999999888654 444432 2 589999999999999999999998886544
No 69
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.59 E-value=1.7e-14 Score=86.79 Aligned_cols=78 Identities=24% Similarity=0.436 Sum_probs=57.8
Q ss_pred CCcEEEEEeeeeCCCCceEEEeC----CEEecCCCCCceEEcCC-------CCceeEEEcCCCCCCCeeEEEEEEccccc
Q psy2441 127 SHTTVLHCSASGNPPPKISWIRE----MLPVDTSRNPRYNLLTS-------GAPGALQITNSIEEDQGKYECVAENEVGT 195 (212)
Q Consensus 127 g~~~~l~C~~~~~p~~~i~W~~~----~~~~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~g~y~C~a~n~~g~ 195 (212)
|+.+.|.|.+.+.|.|.|.|+++ +..+.....+....... .....|.|.+++.+|+|.|.|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 67899999999999999999984 33333221112222111 11258999999999999999999999999
Q ss_pred ceecceEEEE
Q psy2441 196 EYSPSTMLYV 205 (212)
Q Consensus 196 ~~~~~~~l~v 205 (212)
.... +.|.|
T Consensus 81 ~~~~-a~L~V 89 (90)
T cd05858 81 SHHS-AWLTV 89 (90)
T ss_pred ccce-EEEEE
Confidence 8777 77766
No 70
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.59 E-value=1.4e-14 Score=86.35 Aligned_cols=81 Identities=27% Similarity=0.499 Sum_probs=62.2
Q ss_pred CcEEEEEeeeeCCCC--ceEEEeCCEEecCC-CCCceEEc-CCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEE
Q psy2441 128 HTTVLHCSASGNPPP--KISWIREMLPVDTS-RNPRYNLL-TSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTML 203 (212)
Q Consensus 128 ~~~~l~C~~~~~p~~--~i~W~~~~~~~~~~-~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l 203 (212)
+.+.|.|.+.+.|.| .+.|++++..+... ...++... .....+.|.|.+++..|+|.|+|.|.|..|..... +.|
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~-~~l 79 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSAS-ADL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEE-EEE
Confidence 468999999999987 56899999887643 12222211 11123789999999999999999999999998877 888
Q ss_pred EEecce
Q psy2441 204 YVKGTQ 209 (212)
Q Consensus 204 ~v~~~~ 209 (212)
.|.+++
T Consensus 80 ~V~~pP 85 (85)
T cd04970 80 IVRGPP 85 (85)
T ss_pred EEECCC
Confidence 888753
No 71
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.59 E-value=1.9e-14 Score=83.44 Aligned_cols=72 Identities=25% Similarity=0.428 Sum_probs=54.9
Q ss_pred EEEEeeeeCCCCceEEEeCCEEecCCCCCceE--EcC-CCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEE
Q psy2441 131 VLHCSASGNPPPKISWIREMLPVDTSRNPRYN--LLT-SGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTML 203 (212)
Q Consensus 131 ~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~--~~~-~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l 203 (212)
.|.|.+.|+|.|.+.|++++..+......... ... ....+.|.|.++...|+|.|+|.|.|..|++... +.+
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~-~~~ 76 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKN-VSA 76 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceE-EEe
Confidence 37899999999999999999999764111111 111 1123689999999999999999999999988765 543
No 72
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.59 E-value=2.8e-14 Score=86.09 Aligned_cols=84 Identities=27% Similarity=0.478 Sum_probs=60.7
Q ss_pred cCCcceeEecCCcEEEEEeeeeCCCCceEEEe-CCEEecCCCCCceEEcC-CCCceeEEEcCCCCCCCeeEEEEEEcccc
Q psy2441 117 EAPSTKVVEISHTTVLHCSASGNPPPKISWIR-EMLPVDTSRNPRYNLLT-SGAPGALQITNSIEEDQGKYECVAENEVG 194 (212)
Q Consensus 117 ~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~-~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~a~n~~g 194 (212)
..|....+..|+.+.|.|.+.|.|. .+.|++ ++..+... .++.... .....+|.|.+++.+|+|.|.|.|.|..|
T Consensus 5 v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g 81 (92)
T cd04977 5 IVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQ--QQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKG 81 (92)
T ss_pred EecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccC--CCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCC
Confidence 3455577888999999999999874 999997 55554442 2333322 22346899999999999999999999976
Q ss_pred cceecceEE
Q psy2441 195 TEYSPSTML 203 (212)
Q Consensus 195 ~~~~~~~~l 203 (212)
.....++.|
T Consensus 82 ~~~~~sv~l 90 (92)
T cd04977 82 TESEATVNL 90 (92)
T ss_pred CcceeEEEE
Confidence 543332444
No 73
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.59 E-value=1.6e-14 Score=84.30 Aligned_cols=71 Identities=38% Similarity=0.729 Sum_probs=54.9
Q ss_pred EEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCC----CCCeeEEEEEEcccccceecceE
Q psy2441 130 TVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIE----EDQGKYECVAENEVGTEYSPSTM 202 (212)
Q Consensus 130 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~y~C~a~n~~g~~~~~~~~ 202 (212)
+.|.|.+.|+|.|.+.|++++..+......++...... +.|.|.++.. +|+|.|.|.|.|..|...+..+.
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~--g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~ 75 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDS--GTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIH 75 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCC--CEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccE
Confidence 46899999999999999999998865433444443332 7888888753 68999999999999988765343
No 74
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.58 E-value=2e-14 Score=83.33 Aligned_cols=73 Identities=29% Similarity=0.584 Sum_probs=58.3
Q ss_pred CCcEEEEEeeeeCCCCceEEEe-CCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEEEE
Q psy2441 127 SHTTVLHCSASGNPPPKISWIR-EMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205 (212)
Q Consensus 127 g~~~~l~C~~~~~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v 205 (212)
|+.+.|.|.+.+.|.|.+.|++ ++..+... .++....+ +.|.|.++..+|.|.|.|.|.|..|..... +.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~--~~~~~~~~---~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~-~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNS--SRTLVYDN---GTLDILITTVKDTGSFTCIASNAAGEATAT-VELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCC--CeEEEecC---CEEEEEECChhhCEEEEEEEECCCCeEEEE-EEEEC
Confidence 6789999999999999999997 56555442 34444444 689999999999999999999999987655 55543
No 75
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.58 E-value=2.8e-14 Score=83.71 Aligned_cols=73 Identities=25% Similarity=0.414 Sum_probs=55.8
Q ss_pred EEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcC-----CCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEEE
Q psy2441 131 VLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLT-----SGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLY 204 (212)
Q Consensus 131 ~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~ 204 (212)
.|.|.+.|+|.|.+.|++++..+............ ....+.|.|.++..+|+|.|+|.|.|..|.+... +.+.
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~-~~~~ 79 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKS-ISAH 79 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeE-EEee
Confidence 47899999999999999999998765221111111 1123679999999999999999999999998766 5543
No 76
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.58 E-value=1.6e-14 Score=83.12 Aligned_cols=71 Identities=34% Similarity=0.576 Sum_probs=56.3
Q ss_pred EEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEEEEe
Q psy2441 130 TVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206 (212)
Q Consensus 130 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v~ 206 (212)
+.|.|.+.|.|.|.+.|++++..+... +...... ...|.|.++..+|+|.|.|.|.|..|..... +.|.|+
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~---~~~~~~~--~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~-~~l~V~ 71 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPAD---RTKFENF--NKTLKIDNVSEEDDGEYRCTASNSLGSARHT-ISVTVE 71 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCC---ceeEecC--CCEEEECCCCHHHCEEEEEEEEeCCceEEEE-EEEEEC
Confidence 468999999999999999998776542 2222222 2689999999999999999999999988766 766653
No 77
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.58 E-value=1.9e-14 Score=85.27 Aligned_cols=77 Identities=27% Similarity=0.483 Sum_probs=59.9
Q ss_pred eEecCCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceE
Q psy2441 123 VVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTM 202 (212)
Q Consensus 123 ~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~ 202 (212)
.+..|+.+.|.|.+.+.|.|.+.|++++..+... ........ ...|.|.++..+|+|.|.|.|.|..|..... +.
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~--~~~~~~~~--~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~-~~ 79 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPT--EIGESRKK--KWTLSLKNLKPEDSGKYTCHVSNRAGEINAT-YK 79 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCC--ccceecCc--eEEEEEccCChhhCEEEEEEEEcCCccEEEE-EE
Confidence 3556999999999999999999999998877543 11111111 2689999999999999999999999987654 54
Q ss_pred EE
Q psy2441 203 LY 204 (212)
Q Consensus 203 l~ 204 (212)
|.
T Consensus 80 v~ 81 (82)
T cd05856 80 VD 81 (82)
T ss_pred Ee
Confidence 43
No 78
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.58 E-value=2.2e-14 Score=83.46 Aligned_cols=71 Identities=32% Similarity=0.641 Sum_probs=53.6
Q ss_pred EEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCC----CCCeeEEEEEEcccccceecceE
Q psy2441 130 TVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIE----EDQGKYECVAENEVGTEYSPSTM 202 (212)
Q Consensus 130 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~y~C~a~n~~g~~~~~~~~ 202 (212)
+.|.|.+.|+|.|.+.|++++..+......++.....+ ++|.|..+.. .|.|.|.|.|.|..|...+..+.
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~--g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~ 75 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNT--GTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIV 75 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCC--ceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEE
Confidence 47999999999999999999988754323444444333 6788877654 37899999999999988765343
No 79
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.58 E-value=2.6e-14 Score=83.21 Aligned_cols=70 Identities=33% Similarity=0.655 Sum_probs=53.9
Q ss_pred EEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCC----CCCCeeEEEEEEcccccceecce
Q psy2441 130 TVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSI----EEDQGKYECVAENEVGTEYSPST 201 (212)
Q Consensus 130 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~----~~d~g~y~C~a~n~~g~~~~~~~ 201 (212)
+.|.|.+.|+|.|.+.|++++..+......++.....+ ++|.|..+. .+|.|.|.|.|.|..|.+.+..+
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~--~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~ 74 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRS--GTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKI 74 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCC--ceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEE
Confidence 46899999999999999999987754334555553333 688888764 24699999999999998876633
No 80
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.57 E-value=5.9e-14 Score=84.72 Aligned_cols=90 Identities=26% Similarity=0.471 Sum_probs=69.0
Q ss_pred CCccccCCcceeEecCCcEEEEEeeeeCCCC-ceEEEeCCEEecCCCCCceEEcCC----CCceeEEEcCCCCCC-CeeE
Q psy2441 112 FPQITEAPSTKVVEISHTTVLHCSASGNPPP-KISWIREMLPVDTSRNPRYNLLTS----GAPGALQITNSIEED-QGKY 185 (212)
Q Consensus 112 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d-~g~y 185 (212)
+|.+ .......+.+|+.+.|.|.+.+.|.| .|.|.+++..+......++.+... +..+.|.|.++...| .|.|
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y 80 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY 80 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence 3544 45566778899999999999888876 789998877665543456655332 346899999998767 7899
Q ss_pred EEEEEcccccceecceEE
Q psy2441 186 ECVAENEVGTEYSPSTML 203 (212)
Q Consensus 186 ~C~a~n~~g~~~~~~~~l 203 (212)
.|.|.|.+|..... ++|
T Consensus 81 ~C~a~N~~G~d~~~-i~L 97 (98)
T cd05898 81 NCTAWNSFGSGTAI-IQL 97 (98)
T ss_pred EEEEEeCCccceEE-EEe
Confidence 99999999999766 554
No 81
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.57 E-value=2e-14 Score=86.80 Aligned_cols=80 Identities=20% Similarity=0.256 Sum_probs=62.3
Q ss_pred ceeEecCCcEEEEEeeee-----CCCCceEEEeCCEEecCC--CCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEccc
Q psy2441 121 TKVVEISHTTVLHCSASG-----NPPPKISWIREMLPVDTS--RNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEV 193 (212)
Q Consensus 121 ~~~~~~g~~~~l~C~~~~-----~p~~~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~ 193 (212)
...+.+|+.+.|.|.+.+ .|.+.+.|++++..+... ...++.. .+ ..|.|.++..+|+|.|.|.+.|..
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~--~~--~~L~I~~~~~~DsG~Y~C~~~N~~ 83 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ--QK--DLLWFLPAALEDSGLYTCVVRNST 83 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee--cC--CeEEEccCCcccCeEEEEEEcCCC
Confidence 455778999999999998 688899999998665432 1223322 22 689999999999999999999999
Q ss_pred ccceecceEEEE
Q psy2441 194 GTEYSPSTMLYV 205 (212)
Q Consensus 194 g~~~~~~~~l~v 205 (212)
|..... +.|.|
T Consensus 84 g~~~~~-~~L~v 94 (94)
T cd05756 84 YCMKVS-ISLTV 94 (94)
T ss_pred ccEEEE-EEEEC
Confidence 988766 66653
No 82
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.56 E-value=5.9e-14 Score=79.85 Aligned_cols=68 Identities=22% Similarity=0.454 Sum_probs=53.4
Q ss_pred CCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEE
Q psy2441 127 SHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTML 203 (212)
Q Consensus 127 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l 203 (212)
|+.+.|.|.+.|.|.|.+.|++++..+... .++.. .. ..|.|.++. |+|.|+|.|.|..|..... +.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~--~~~~~-~~---~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~-a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKE--DEMPV-GR---NVLELTNIY--ESANYTCVAISSLGMIEAT-AQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCc--cceec-Cc---cEEEEeccc--cCeeEEEEEEeCCCEEEEE-EEE
Confidence 678999999999999999999999887543 22221 12 578888874 7999999999999987665 543
No 83
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.55 E-value=3.8e-14 Score=83.18 Aligned_cols=72 Identities=39% Similarity=0.651 Sum_probs=54.5
Q ss_pred EEEEEeeeeCCCCceEEEeCCEEecCC------CCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEE
Q psy2441 130 TVLHCSASGNPPPKISWIREMLPVDTS------RNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTML 203 (212)
Q Consensus 130 ~~l~C~~~~~p~~~i~W~~~~~~~~~~------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l 203 (212)
+.|.|.+.|.|.|.+.|++++...... ...++....+ ++|.|.++..+|+|.|.|.|.|..|...+..+.|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l 77 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSN---GSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL 77 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecC---CeEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence 479999999999999999964322110 1244544444 7899999999999999999999999886654555
Q ss_pred E
Q psy2441 204 Y 204 (212)
Q Consensus 204 ~ 204 (212)
.
T Consensus 78 ~ 78 (79)
T cd05734 78 T 78 (79)
T ss_pred e
Confidence 4
No 84
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.54 E-value=9.4e-14 Score=82.03 Aligned_cols=75 Identities=29% Similarity=0.514 Sum_probs=56.2
Q ss_pred CCcEEEEEeeeeCCCCceEEEeCCE---EecCCC---CCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecc
Q psy2441 127 SHTTVLHCSASGNPPPKISWIREML---PVDTSR---NPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPS 200 (212)
Q Consensus 127 g~~~~l~C~~~~~p~~~i~W~~~~~---~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~ 200 (212)
|+.+.|.|.+.+.|.|.+.|++++. .+.... ..++..... ..|.|.++..+|+|.|.|.|.|..|.....
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~---~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~- 76 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNI---GQLVIYNAQPQDAGLYTCTARNSGGLLRAN- 76 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccc---cEEEEccCCcccCEEEEEEEecCCceEEEE-
Confidence 6889999999999999999999742 111110 112222222 689999999999999999999999998776
Q ss_pred eEEEE
Q psy2441 201 TMLYV 205 (212)
Q Consensus 201 ~~l~v 205 (212)
+.|.|
T Consensus 77 ~~l~v 81 (81)
T cd05765 77 FPLSV 81 (81)
T ss_pred EEEeC
Confidence 76654
No 85
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.53 E-value=1.9e-13 Score=82.50 Aligned_cols=83 Identities=35% Similarity=0.696 Sum_probs=60.9
Q ss_pred CccccCCcceeEe---cCCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCC-CCCeeEEEE
Q psy2441 113 PQITEAPSTKVVE---ISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIE-EDQGKYECV 188 (212)
Q Consensus 113 p~~~~~~~~~~~~---~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~C~ 188 (212)
|.|...+....+. .|+.+.|.|.+.++|.|.+.|++++..+......++.. .+ +.|.|.++.. +|+|.|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~-~~---~~L~i~~~~~~~d~G~Y~C~ 77 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSL-VG---GNLVISNPSKAKDAGRYQCL 77 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEE-EC---CEEEEecCCccCCCEEEEEE
Confidence 3444445444333 34679999999999999999999998885432334433 23 5788988774 899999999
Q ss_pred EEcccccceec
Q psy2441 189 AENEVGTEYSP 199 (212)
Q Consensus 189 a~n~~g~~~~~ 199 (212)
|.|..|...+.
T Consensus 78 a~N~~G~~~S~ 88 (91)
T cd04967 78 ASNIVGTVLSR 88 (91)
T ss_pred EEcCCCEEEec
Confidence 99999987654
No 86
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.53 E-value=1.4e-13 Score=78.51 Aligned_cols=64 Identities=25% Similarity=0.452 Sum_probs=50.8
Q ss_pred EEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEccccccee
Q psy2441 130 TVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYS 198 (212)
Q Consensus 130 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~ 198 (212)
+.|.|.+.|.|.|++.|++++.++... ..++.. ++ .+|.|.++..+|+|.|+|.|.|.......
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~-~~~~~~--~~--~~L~I~~v~~~D~G~YtC~a~~~~~~~~~ 64 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEK-CSRYHV--DG--YSLVIKDVTEEDAGIYTILLGIKQYNLFK 64 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCC-CcEEEe--CC--CEEEECcCCHHHCEEEEEEEEccccceEe
Confidence 368999999999999999999887653 233322 22 58999999999999999999998554433
No 87
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.51 E-value=1.4e-13 Score=79.96 Aligned_cols=70 Identities=27% Similarity=0.567 Sum_probs=54.6
Q ss_pred EEEEEeeee-CCCCceEEEeCCEEecCCCCCc-eEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceec
Q psy2441 130 TVLHCSASG-NPPPKISWIREMLPVDTSRNPR-YNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSP 199 (212)
Q Consensus 130 ~~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~ 199 (212)
+.|.|.+.+ .|.|.+.|++++..+....... +..........|.|.++..+|.|.|.|.|.|..|.+...
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 72 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVT 72 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEE
Confidence 368999999 9999999999998887642222 112222234789999999999999999999999987654
No 88
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.50 E-value=1.8e-13 Score=79.62 Aligned_cols=66 Identities=17% Similarity=0.426 Sum_probs=54.5
Q ss_pred ccccCCcceeEecCCcEEEEEeeeeCCC-CceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcc
Q psy2441 114 QITEAPSTKVVEISHTTVLHCSASGNPP-PKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENE 192 (212)
Q Consensus 114 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~ 192 (212)
.+...|....+.+|+++.|.|.+.+.|. +.+.|++++..+... . ..|.|.++ .+|+|.|.|.|.|.
T Consensus 2 vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~---------~---~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 2 VVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLETT---------T---NSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred eEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeecc---------C---CeEEEeec-ccCCEEeEEECCCC
Confidence 3455677778889999999999999876 479999999876321 1 68899999 99999999999885
No 89
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.47 E-value=3.4e-13 Score=80.10 Aligned_cols=78 Identities=19% Similarity=0.279 Sum_probs=57.3
Q ss_pred CCcEEEEEeeeeC--CCCceEEEeCCEEecCC--CCCceE-EcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecce
Q psy2441 127 SHTTVLHCSASGN--PPPKISWIREMLPVDTS--RNPRYN-LLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPST 201 (212)
Q Consensus 127 g~~~~l~C~~~~~--p~~~i~W~~~~~~~~~~--~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~ 201 (212)
|+.+.|.|.+.+. |.+.+.|++++...... ...+.. .......+.|.|.+++.+|+|.|.|.|.|..|..... .
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s-~ 79 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKES-T 79 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEE-E
Confidence 6889999999999 78899999877654322 000111 1111124789999999999999999999999988776 6
Q ss_pred EEEE
Q psy2441 202 MLYV 205 (212)
Q Consensus 202 ~l~v 205 (212)
.+.|
T Consensus 80 ~v~v 83 (84)
T cd05742 80 KVNI 83 (84)
T ss_pred EEEE
Confidence 6655
No 90
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.44 E-value=1e-12 Score=76.50 Aligned_cols=70 Identities=19% Similarity=0.494 Sum_probs=53.1
Q ss_pred EEEEEeeee-CCCCceEEEeCCEEecCCC--CCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceec
Q psy2441 130 TVLHCSASG-NPPPKISWIREMLPVDTSR--NPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSP 199 (212)
Q Consensus 130 ~~l~C~~~~-~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~ 199 (212)
+.|.|.+.+ .|.+.+.|++++..+.... ..++..........|.|.++..+|+|.|.|.|.|..|.....
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~ 73 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVT 73 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEE
Confidence 468999864 6778999999998876431 223333332334789999999999999999999999987654
No 91
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.43 E-value=1e-12 Score=78.21 Aligned_cols=77 Identities=23% Similarity=0.378 Sum_probs=60.7
Q ss_pred CCcceeEecCCcEEEEEeeee-CCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccc
Q psy2441 118 APSTKVVEISHTTVLHCSASG-NPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTE 196 (212)
Q Consensus 118 ~~~~~~~~~g~~~~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~ 196 (212)
.|....+.+|+.++|.|.+.+ .|.+.+.|++++..++.. . ...+ +.|.|.++..+|+|.|.|.|.|..|..
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~----~-~~~~---~~L~I~~v~~~DsG~Y~C~a~n~~g~~ 78 (85)
T cd05754 7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR----A-MDFN---GILTIRNVQLSDAGTYVCTGSNMLDTD 78 (85)
T ss_pred CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc----c-cccC---CEEEECCCCHHHCEEEEEEEeccCCeE
Confidence 445567888999999999965 688899999988654332 1 1112 689999999999999999999999988
Q ss_pred eecceEE
Q psy2441 197 YSPSTML 203 (212)
Q Consensus 197 ~~~~~~l 203 (212)
... +.|
T Consensus 79 ~~~-~~l 84 (85)
T cd05754 79 EAT-ATL 84 (85)
T ss_pred eEE-EEE
Confidence 776 554
No 92
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.43 E-value=1.8e-12 Score=77.84 Aligned_cols=83 Identities=18% Similarity=0.253 Sum_probs=60.1
Q ss_pred CcceeEecCCcEEEEEeeeeCCCCceEEEeCCEEecCCC--CCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccc
Q psy2441 119 PSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSR--NPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTE 196 (212)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~ 196 (212)
++...+.+|+.+.|.|.+.+ |.+.+.|++++..+.... ..++.... ..|.|.++..+|+|.|.|.|.|..+..
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~~~~~~~ 77 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTE----DGLLIRSVSPADAGVYTCQSVEHGFKQ 77 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcC----CCEEEccCCHHHCEEEEEEEecCccce
Confidence 34456788999999999977 778999999987765531 12333322 469999999999999999998765544
Q ss_pred eecceEEEEe
Q psy2441 197 YSPSTMLYVK 206 (212)
Q Consensus 197 ~~~~~~l~v~ 206 (212)
...+..|.|.
T Consensus 78 ~~~~~~l~V~ 87 (89)
T cd04979 78 TLATYSLNVL 87 (89)
T ss_pred eEeEEEEEEe
Confidence 3333566554
No 93
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.43 E-value=3.2e-12 Score=75.52 Aligned_cols=69 Identities=22% Similarity=0.503 Sum_probs=56.3
Q ss_pred CCcceeEecCCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcc
Q psy2441 118 APSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENE 192 (212)
Q Consensus 118 ~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~ 192 (212)
.|....+..|+++.|.|.+.+ +.+.+.|++++.++... ..++... + ..|.|.+++.+|+|.|.|.|.+.
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~-~~r~~~~-~---~~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPE-SAKYLLY-R---DGLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCC-CceEEEE-C---CcEEEeCCCHHHCEEEEEEEEec
Confidence 355677889999999999864 56899999999998765 2455443 3 57999999999999999999875
No 94
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.41 E-value=3.1e-12 Score=75.79 Aligned_cols=68 Identities=21% Similarity=0.374 Sum_probs=49.3
Q ss_pred CCcEEEEEeeeeCCCCceEEEeCCEEecCCCCC--ceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccc
Q psy2441 127 SHTTVLHCSASGNPPPKISWIREMLPVDTSRNP--RYNLLTSGAPGALQITNSIEEDQGKYECVAENEVG 194 (212)
Q Consensus 127 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g 194 (212)
|+++.|.|.+.+.|.+.+.|++.+......... +.........+.|.|.+++.+|+|.|.|.|.|..+
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~ 70 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQ 70 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECcc
Confidence 788999999999999999999866532211000 11111111137899999999999999999999766
No 95
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.41 E-value=4.9e-12 Score=75.33 Aligned_cols=80 Identities=29% Similarity=0.522 Sum_probs=60.3
Q ss_pred eeEecCCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEc-CCCCceeEEEcCCCCCCCeeEEEEEEcccccceecc
Q psy2441 122 KVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLL-TSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPS 200 (212)
Q Consensus 122 ~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~ 200 (212)
..+..|+.+.|.|.+.+.|.+.+.|++++..+... ..+... .......|.|.++..+|.|.|.|.+.|..|.....
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~- 80 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKE--HRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHT- 80 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECccc--CceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEE-
Confidence 34567999999999999999999999998877643 111111 11112579999999999999999999999887554
Q ss_pred eEEE
Q psy2441 201 TMLY 204 (212)
Q Consensus 201 ~~l~ 204 (212)
+.|.
T Consensus 81 ~~l~ 84 (85)
T cd05729 81 YKVD 84 (85)
T ss_pred EEEe
Confidence 5544
No 96
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.38 E-value=8.5e-12 Score=75.36 Aligned_cols=72 Identities=21% Similarity=0.374 Sum_probs=54.8
Q ss_pred cceeEecCCcEEEEEeeeeCCCCceEEEeCCEEecC-C-----CCCceEEcCCC-CceeEEEcCCCCCCCeeEEEEEEc
Q psy2441 120 STKVVEISHTTVLHCSASGNPPPKISWIREMLPVDT-S-----RNPRYNLLTSG-APGALQITNSIEEDQGKYECVAEN 191 (212)
Q Consensus 120 ~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~-~-----~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~a~n 191 (212)
.+..+.+|+.+.|.|.+.+.|.|.+.|++++..+.. . ...++...... ....|.|.++..+|+|.|+|.+..
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 446788999999999999999999999987653211 0 12444433222 247999999999999999999987
No 97
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.37 E-value=4e-12 Score=75.02 Aligned_cols=73 Identities=22% Similarity=0.266 Sum_probs=57.4
Q ss_pred eeEecCCcEEEEEeeee-CCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecc
Q psy2441 122 KVVEISHTTVLHCSASG-NPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPS 200 (212)
Q Consensus 122 ~~~~~g~~~~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~ 200 (212)
..+.+|+.+.|.|.+.. .+.+.+.|++++..+... ..+ ..|.|.+++.+|+|.|.|.+.|..|...+..
T Consensus 9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~-------~~~---~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~ 78 (83)
T cd05753 9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS-------HSN---SNLSIPQATLSDSGSYHCSGIIGSYDYSSEP 78 (83)
T ss_pred ceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc-------CCC---ceEEECccCHHHCEEEEEEEEeCCceecCCC
Confidence 45788999999999854 556789999998765431 111 6899999999999999999999998776654
Q ss_pred eEEE
Q psy2441 201 TMLY 204 (212)
Q Consensus 201 ~~l~ 204 (212)
+.+.
T Consensus 79 ~~i~ 82 (83)
T cd05753 79 VSIT 82 (83)
T ss_pred EEEE
Confidence 5554
No 98
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.36 E-value=7.6e-12 Score=75.10 Aligned_cols=78 Identities=17% Similarity=0.327 Sum_probs=59.5
Q ss_pred eeEecCCcEEEEEeeee-----CCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccc
Q psy2441 122 KVVEISHTTVLHCSASG-----NPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTE 196 (212)
Q Consensus 122 ~~~~~g~~~~l~C~~~~-----~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~ 196 (212)
..+.+|+...|.|...+ +|.|.+.|++++.++... .+. ...+ ..|.|.++..+|+|.|+|.|.|..+..
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~--~~~-~~~~---~~L~I~~v~~~DsG~YtC~~~n~~~~~ 78 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGD--RKR-FVKG---SKLLIQNVTEEDAGNYTCKLTFTHNGK 78 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCC--ccE-EecC---CEEEEeeCChhhCEEEEEEEEecCCCE
Confidence 45678999999998743 357899999999988754 222 2233 799999999999999999999988776
Q ss_pred eecceEEEEe
Q psy2441 197 YSPSTMLYVK 206 (212)
Q Consensus 197 ~~~~~~l~v~ 206 (212)
... ++..+.
T Consensus 79 ~~~-~t~t~~ 87 (92)
T cd05757 79 QYN-VTRTIS 87 (92)
T ss_pred EEE-EEEEEE
Confidence 555 444443
No 99
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.35 E-value=1.9e-11 Score=74.53 Aligned_cols=50 Identities=20% Similarity=0.435 Sum_probs=43.3
Q ss_pred CeEEeCCCccEEeeCCeEEEEcccCCCCCCcEEEEeCCEEecCCCCCeeEEe
Q psy2441 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLL 81 (212)
Q Consensus 30 p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~l~~~~~~~~~~~ 81 (212)
|.|...+.+..+.+|+.+.|.|.+.|.|++.+.|+|+|.+|... .++.+.
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~--~~~~~~ 50 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEG--EGIKIE 50 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCC--CcEEEE
Confidence 56788889999999999999999999999999999999999754 445444
No 100
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.34 E-value=7.9e-12 Score=74.93 Aligned_cols=72 Identities=24% Similarity=0.419 Sum_probs=55.7
Q ss_pred eeEecCCcEEEEEee-eeCCCCceEEEeCCEEecCCCCC-ceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccc
Q psy2441 122 KVVEISHTTVLHCSA-SGNPPPKISWIREMLPVDTSRNP-RYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTE 196 (212)
Q Consensus 122 ~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~ 196 (212)
..+.+|+.+.|.|.. .+.|.+.+.|++++.+.....+. ++....+ +.|.+.+++.+|+|.|.|.|.|..+..
T Consensus 13 ~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~---G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 13 VKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTN---GNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred eeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCC---CcEEEeecCHhhCceeEEEEEecccCC
Confidence 567889999999976 77899999999998654221123 3323323 799999999999999999999976544
No 101
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.33 E-value=2.7e-11 Score=73.40 Aligned_cols=75 Identities=20% Similarity=0.278 Sum_probs=55.0
Q ss_pred CcceeEecCCcEEEEEeeeeCCCCceEEEeCCEEe-c-C----CCCCceEEcC-CCCceeEEEcCCCCCCCeeEEEEEEc
Q psy2441 119 PSTKVVEISHTTVLHCSASGNPPPKISWIREMLPV-D-T----SRNPRYNLLT-SGAPGALQITNSIEEDQGKYECVAEN 191 (212)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~-~-~----~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~a~n 191 (212)
+....+.+|+++.|.|.+.+.|.+.+.|++.+... . . ....|+.... .....+|.|.++..+|+|.|.|.+.+
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t 83 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT 83 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence 34577889999999999999999999998632211 0 0 0135555422 22347899999999999999999988
Q ss_pred cc
Q psy2441 192 EV 193 (212)
Q Consensus 192 ~~ 193 (212)
..
T Consensus 84 ~~ 85 (95)
T cd07701 84 MP 85 (95)
T ss_pred ec
Confidence 43
No 102
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.30 E-value=1.9e-11 Score=73.16 Aligned_cols=74 Identities=26% Similarity=0.329 Sum_probs=59.5
Q ss_pred CcceeEecCCcEEEEEe-eeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCe-eEEEEEEcccccc
Q psy2441 119 PSTKVVEISHTTVLHCS-ASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQG-KYECVAENEVGTE 196 (212)
Q Consensus 119 ~~~~~~~~g~~~~l~C~-~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~a~n~~g~~ 196 (212)
.+...+.+|+.+.|.|. ..+.|.|.|.|++++..... ...|+....+ +.|.|.++..+|.| .|.|.|.|.....
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~-~~~Ri~~~~~---GnL~fs~v~~~D~g~~Y~C~a~~~~~~~ 85 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHIT-QDERVSMGQN---GNLYFANVEEQDSHPDYICHAHFPGLRT 85 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCcccc-ccccEEECCC---ceEEEEEEehhhCCCCeEEEEEcccccc
Confidence 34577899999999997 69999999999987644332 2467766666 89999999999999 8999999975433
No 103
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.29 E-value=2.7e-11 Score=72.79 Aligned_cols=74 Identities=22% Similarity=0.204 Sum_probs=54.0
Q ss_pred eEecCCcEEEEEeeeeCCCCceEEEeCCEEecCC------------CCCceEEcC---CCCceeEEEcCCCCCCCeeEEE
Q psy2441 123 VVEISHTTVLHCSASGNPPPKISWIREMLPVDTS------------RNPRYNLLT---SGAPGALQITNSIEEDQGKYEC 187 (212)
Q Consensus 123 ~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~------------~~~~~~~~~---~~~~~~l~i~~~~~~d~g~y~C 187 (212)
.+.+|+.+.|.|.+.+.+.+.|.|++++...... ...++.... ..+...|.|.++..+|+|+|.|
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C 82 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC 82 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence 3567999999999999999999999766332111 123333322 2234679999999999999999
Q ss_pred EEEcccccc
Q psy2441 188 VAENEVGTE 196 (212)
Q Consensus 188 ~a~n~~g~~ 196 (212)
.+.|..+..
T Consensus 83 ~v~~~~~~~ 91 (94)
T cd07690 83 EVEDKKEEV 91 (94)
T ss_pred EECCccceE
Confidence 999876654
No 104
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.27 E-value=2.4e-11 Score=72.66 Aligned_cols=67 Identities=22% Similarity=0.331 Sum_probs=50.2
Q ss_pred CCeEEeCCCccEEeeCCeEEEEcccCCCCCCcEEEEeCCEEecCCC-----CCeeEEeec--CCCCeEEEeeeC
Q psy2441 29 FPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSR-----NPRYNLLTS--GAPGTYIKIKPN 95 (212)
Q Consensus 29 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~l~~~~-----~~~~~~~~~--~~~g~~l~i~~~ 95 (212)
+|.|...+.+..+.+|+.+.|.|.+.|.|.|.++|+|++.++.... ...+.+... +|.|.|.|.+.+
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N 74 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAEN 74 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEc
Confidence 5888899999999999999999999999999999999988775431 112222222 366666666655
No 105
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.24 E-value=1.2e-10 Score=69.19 Aligned_cols=80 Identities=20% Similarity=0.258 Sum_probs=55.8
Q ss_pred CCcEEEEEeeeeCCC--CceEEEeCCEEecCC---CCCce-EEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecc
Q psy2441 127 SHTTVLHCSASGNPP--PKISWIREMLPVDTS---RNPRY-NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPS 200 (212)
Q Consensus 127 g~~~~l~C~~~~~p~--~~i~W~~~~~~~~~~---~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~ 200 (212)
|+++.|.|.+.+.+. ..+.|...+...... ...+. ........+.|.|.+++.+|+|.|+|.|.|..|.....
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~- 79 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNS- 79 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEeccc-
Confidence 788999999987664 478998876543221 01011 11111124789999999999999999999998877766
Q ss_pred eEEEEec
Q psy2441 201 TMLYVKG 207 (212)
Q Consensus 201 ~~l~v~~ 207 (212)
..|.|.+
T Consensus 80 t~~~V~~ 86 (86)
T cd05862 80 TIVIVHE 86 (86)
T ss_pred EEEEEeC
Confidence 7777653
No 106
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.23 E-value=1.1e-10 Score=65.02 Aligned_cols=63 Identities=33% Similarity=0.672 Sum_probs=50.3
Q ss_pred cCCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccc
Q psy2441 126 ISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVG 194 (212)
Q Consensus 126 ~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g 194 (212)
+|+.+.|.|.+.+.+.+.+.|++++..+.. .......+ ..|.|.++...|+|.|.|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~---~~~~~~~~---~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE---SNRLSASG---STLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCC---CCEEecCC---cEEEEeeCCcccCEEEEEEEecCCC
Confidence 478999999998889999999999887762 11111222 6899999999999999999998764
No 107
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.22 E-value=4e-10 Score=67.71 Aligned_cols=85 Identities=16% Similarity=0.204 Sum_probs=65.5
Q ss_pred ceeEecCCcEEEEEeeeeCCCCc-eEEEeCCEEecCCCCCceEEcCC---CCceeEEEcCCCCCCCeeEEEEEEcccccc
Q psy2441 121 TKVVEISHTTVLHCSASGNPPPK-ISWIREMLPVDTSRNPRYNLLTS---GAPGALQITNSIEEDQGKYECVAENEVGTE 196 (212)
Q Consensus 121 ~~~~~~g~~~~l~C~~~~~p~~~-i~W~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~ 196 (212)
...+.+|+++.|.|.++++|+|. +.|.+++..+.......+..... ...+.|.+.++..++.|.|+|.|.|..+..
T Consensus 12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~ 91 (101)
T cd05860 12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA 91 (101)
T ss_pred eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence 36688999999999999999997 99999887665442222222111 135899999999999999999999998888
Q ss_pred eecceEEEEe
Q psy2441 197 YSPSTMLYVK 206 (212)
Q Consensus 197 ~~~~~~l~v~ 206 (212)
... +.|.|+
T Consensus 92 s~t-F~l~v~ 100 (101)
T cd05860 92 SVT-FNVYVN 100 (101)
T ss_pred EEE-EEEEEe
Confidence 766 666654
No 108
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.21 E-value=7.8e-11 Score=68.97 Aligned_cols=64 Identities=22% Similarity=0.309 Sum_probs=49.9
Q ss_pred EeCCCccEEeeCCeEEEEcccCCCCCC-cEEEEeCCEEecC---CCCCeeEEeecCCCCeEEEeeeCC
Q psy2441 33 TEAPSTKVVEISHTTVLHCSASGNPPP-KISWIREMLPVDT---SRNPRYNLLTSGAPGTYIKIKPNL 96 (212)
Q Consensus 33 ~~~~~~~~v~~g~~v~l~C~~~~~p~~-~v~W~k~g~~l~~---~~~~~~~~~~~~~~g~~l~i~~~~ 96 (212)
...|.++.+.+|+++.|.|.+.|.|.| +|.|+|+|.++.. ...+.+.+....|.|.|.|.+.+.
T Consensus 2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~~~~~s~L~i~~~~d~g~Y~C~A~N~ 69 (81)
T cd05749 2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPPAPSPSVLNVPGLNETSKFSCEAHNA 69 (81)
T ss_pred cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCCCCCCCEEEEccccCCeEEEEEEEec
Confidence 456778899999999999999999999 7999999998854 112445555445677888887763
No 109
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.21 E-value=5.9e-10 Score=65.99 Aligned_cols=81 Identities=35% Similarity=0.640 Sum_probs=62.9
Q ss_pred eeEecCCcEEEEEeeeeCCCCceEEEeC-CEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecc
Q psy2441 122 KVVEISHTTVLHCSASGNPPPKISWIRE-MLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPS 200 (212)
Q Consensus 122 ~~~~~g~~~~l~C~~~~~p~~~i~W~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~ 200 (212)
..+..|+++.|.|.+.+.+.+.+.|+++ +..+... .++..........|.|.++..+|.|.|.|.+.+..+.....
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~- 80 (86)
T smart00410 4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAES--GRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST- 80 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCC--CcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE-
Confidence 4567899999999998888889999998 7766532 44444433334789999999999999999999888777655
Q ss_pred eEEEE
Q psy2441 201 TMLYV 205 (212)
Q Consensus 201 ~~l~v 205 (212)
+.|.|
T Consensus 81 ~~l~V 85 (86)
T smart00410 81 TTLTV 85 (86)
T ss_pred EEEEE
Confidence 66554
No 110
>smart00409 IG Immunoglobulin.
Probab=99.21 E-value=5.9e-10 Score=65.99 Aligned_cols=81 Identities=35% Similarity=0.640 Sum_probs=62.9
Q ss_pred eeEecCCcEEEEEeeeeCCCCceEEEeC-CEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecc
Q psy2441 122 KVVEISHTTVLHCSASGNPPPKISWIRE-MLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPS 200 (212)
Q Consensus 122 ~~~~~g~~~~l~C~~~~~p~~~i~W~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~ 200 (212)
..+..|+++.|.|.+.+.+.+.+.|+++ +..+... .++..........|.|.++..+|.|.|.|.+.+..+.....
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~- 80 (86)
T smart00409 4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAES--GRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST- 80 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCC--CcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE-
Confidence 4567899999999998888889999998 7766532 44444433334789999999999999999999888777655
Q ss_pred eEEEE
Q psy2441 201 TMLYV 205 (212)
Q Consensus 201 ~~l~v 205 (212)
+.|.|
T Consensus 81 ~~l~V 85 (86)
T smart00409 81 TTLTV 85 (86)
T ss_pred EEEEE
Confidence 66554
No 111
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.20 E-value=1.3e-10 Score=68.22 Aligned_cols=71 Identities=38% Similarity=0.689 Sum_probs=55.0
Q ss_pred eeEecCCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecce
Q psy2441 122 KVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPST 201 (212)
Q Consensus 122 ~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~ 201 (212)
..+.+|+.+.|.|.+.+.|.+.+.|++++..+... . ..+.+.++..+|.|.|.|.+.+..+...+..+
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~--------~----~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~ 76 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS--------Q----NGLFIPNVSPEDSGNYTCRASNGSGSNTSTSV 76 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEE--------S----SEEEESSEEGGGTEEEEEEEEETTEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeee--------e----eeeeeeeeccccCEEEEEEEEeCCCCeEeeeE
Confidence 45788999999999999988999999998776642 0 23777888999999999999996654433324
Q ss_pred EEE
Q psy2441 202 MLY 204 (212)
Q Consensus 202 ~l~ 204 (212)
.|.
T Consensus 77 ~v~ 79 (80)
T PF13895_consen 77 NVT 79 (80)
T ss_dssp EEE
T ss_pred Eee
Confidence 444
No 112
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.17 E-value=3.6e-10 Score=67.82 Aligned_cols=79 Identities=18% Similarity=0.260 Sum_probs=55.4
Q ss_pred eeEecCCcEEEEEeeeeCCCCceEEEeCCE--EecCC--CCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEE-cccccc
Q psy2441 122 KVVEISHTTVLHCSASGNPPPKISWIREML--PVDTS--RNPRYNLLTSGAPGALQITNSIEEDQGKYECVAE-NEVGTE 196 (212)
Q Consensus 122 ~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~--~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~-n~~g~~ 196 (212)
....+|+.+.|.|.. +.|.|.+.|++... ..... ...++... + +.|.|.++..+|+|.|.|.|. |..+..
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~-~---~~L~I~~~~~~DsG~Y~C~a~~~~~~~~ 80 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHT-E---RGLLLRSLQRSDAGVYTCTAVEHSFSQT 80 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEe-c---CeEEEeeCChhHCEEEEEEEEccCCeEE
Confidence 346789999999997 47889999998432 21111 12344332 2 579999999999999999997 566655
Q ss_pred eecceEEEEe
Q psy2441 197 YSPSTMLYVK 206 (212)
Q Consensus 197 ~~~~~~l~v~ 206 (212)
... ++|.|.
T Consensus 81 ~~~-~~l~v~ 89 (91)
T cd05871 81 LAK-YTLHVI 89 (91)
T ss_pred EEE-EEEEEe
Confidence 554 666664
No 113
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.17 E-value=4e-10 Score=68.03 Aligned_cols=73 Identities=21% Similarity=0.354 Sum_probs=52.8
Q ss_pred CCCeEEeCCCccEEeeCCeEEEEcccCCCCCCcEEEEeCCEEecCCCCCeeEEeecCCCCeEEEeeeCCccceeEE
Q psy2441 28 GFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTYIKIKPNLFSPLSVY 103 (212)
Q Consensus 28 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~g~~l~i~~~~~~~~~v~ 103 (212)
.||.|...|.+..+.+|+.+.|.|.+.|+|.|.+.|+|+|..+... .++.+... .....|.|.+....+...|
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~--~~~~~~~~-~~~~~L~i~~~~~~D~G~Y 74 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSS--QRHQITST-EYKSTFEISKVQMSDEGNY 74 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCC--CcEEEEEc-CCeeEEEECCCCcccCEeE
Confidence 4788888899999999999999999999999999999999888664 45555432 2223344444433333333
No 114
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.15 E-value=2.7e-10 Score=65.90 Aligned_cols=65 Identities=12% Similarity=0.262 Sum_probs=48.6
Q ss_pred EEEEEee-eeCCCCceEEEeCCEEecCCCCCceEEcCCC---CceeEEEcCCCCCCCeeEEEEEEcccccce
Q psy2441 130 TVLHCSA-SGNPPPKISWIREMLPVDTSRNPRYNLLTSG---APGALQITNSIEEDQGKYECVAENEVGTEY 197 (212)
Q Consensus 130 ~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~ 197 (212)
+.|+|.. .++|++.|.||+++..+...... ...+. ..++|.+.....+|.+.|+|.|.|..+...
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~---~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~ 70 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQ---QENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVSQ 70 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCccc---ccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCCC
Confidence 6899998 56899999999999998653110 01110 135789988888999999999999987654
No 115
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.14 E-value=1e-09 Score=66.65 Aligned_cols=74 Identities=22% Similarity=0.337 Sum_probs=52.8
Q ss_pred cceeEecCCcEEEEEeeeeCCCCceEEEeCCEEe-c-C----CCCCceEEcC-CCCceeEEEcCCCCCCCeeEEEEEEcc
Q psy2441 120 STKVVEISHTTVLHCSASGNPPPKISWIREMLPV-D-T----SRNPRYNLLT-SGAPGALQITNSIEEDQGKYECVAENE 192 (212)
Q Consensus 120 ~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~-~-~----~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~a~n~ 192 (212)
+...+.+|+.+.|.|.+.+.+.+.+.|++.+... . . ....++.... .+....|.|.+++.+|+|.|.|.+.+.
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 84 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM 84 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence 3456788999999999988888899998632211 0 0 0124554422 222468999999999999999999876
Q ss_pred c
Q psy2441 193 V 193 (212)
Q Consensus 193 ~ 193 (212)
.
T Consensus 85 ~ 85 (95)
T cd05717 85 P 85 (95)
T ss_pred C
Confidence 4
No 116
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.13 E-value=6e-10 Score=66.89 Aligned_cols=71 Identities=20% Similarity=0.378 Sum_probs=53.6
Q ss_pred eEecCCcEEEEEee-e----eCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccc
Q psy2441 123 VVEISHTTVLHCSA-S----GNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTE 196 (212)
Q Consensus 123 ~~~~g~~~~l~C~~-~----~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~ 196 (212)
.+..|.+..|.|.- . .++.+.+.|+|++.++... ..++....+. ..|.|.++..+|+|.|+|.+.+..|..
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~-~~~~~~~~~~--~~L~I~~v~~~D~G~YtC~~~~~~~g~ 81 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKD-NEKFYSLKGS--TYLHIIDVSLNDSGYYTCKLQFTHEGK 81 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCC-CcceEecCCC--CEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence 35668999999963 2 3466799999999988754 2334332332 579999999999999999999986544
No 117
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.12 E-value=7e-10 Score=68.03 Aligned_cols=44 Identities=36% Similarity=0.772 Sum_probs=40.7
Q ss_pred CCeEEeCCCccEEeeCCeEEEEcccCCCCCCcEEEEeCCEEecC
Q psy2441 29 FPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDT 72 (212)
Q Consensus 29 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~l~~ 72 (212)
+|.+...|.+..+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~ 44 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLET 44 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECcc
Confidence 58888889999999999999999999999999999999988865
No 118
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.11 E-value=1.4e-10 Score=65.03 Aligned_cols=61 Identities=31% Similarity=0.604 Sum_probs=44.6
Q ss_pred CCcEEEEEee-eeCCCCceEEEeCCEEecCCCCCceEEcCCCC--ceeEEEcCCCCCCCeeEEEEE
Q psy2441 127 SHTTVLHCSA-SGNPPPKISWIREMLPVDTSRNPRYNLLTSGA--PGALQITNSIEEDQGKYECVA 189 (212)
Q Consensus 127 g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~a 189 (212)
|+.+.|.|.+ .+.+...+.|++++...... .......... ...|.|.+++.+|+|.|.|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEG--STTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEE--EEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCc--ceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 77778899999988765543 1222222110 113999999999999999986
No 119
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.11 E-value=9.9e-10 Score=77.02 Aligned_cols=90 Identities=14% Similarity=0.106 Sum_probs=57.7
Q ss_pred ceeeEEEeeccCCCcceecccccCCCCCeEEeCCCccEEeeCCeEEEEcccC-----CCCCCcEEEEeCCEEecCCCCCe
Q psy2441 3 IGTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSAS-----GNPPPKISWIREMLPVDTSRNPR 77 (212)
Q Consensus 3 ~g~Y~C~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~-----~~p~~~v~W~k~g~~l~~~~~~~ 77 (212)
+|.|+|++.|..+..... ..+.+. ..+.+..+.+|+.+.|.|.+. +.|.|+++|||+|.+|... .+
T Consensus 110 sG~Y~C~a~N~~~~~~~~-i~L~V~------~~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~--~r 180 (227)
T PHA02826 110 EGIYICTISSGNICEEST-IRLTFD------SGTINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYT--DR 180 (227)
T ss_pred CEEEEEEEEECCcceEEE-EEEEEe------cCCccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCC--CC
Confidence 599999999977654333 222221 122345678999999999985 3457899999999998754 45
Q ss_pred eEEeecCCCCeEEEeeeCCccceeEEe
Q psy2441 78 YNLLTSGAPGTYIKIKPNLFSPLSVYS 104 (212)
Q Consensus 78 ~~~~~~~~~g~~l~i~~~~~~~~~v~~ 104 (212)
+.+.. ++..|.|.++...+...|.
T Consensus 181 ~~~~~---~~~~L~I~~V~~~DsG~Yt 204 (227)
T PHA02826 181 IQLRN---NNSTLVIKSATHDDSGIYT 204 (227)
T ss_pred EEEeC---CCCEEEECcCCHHhCEEEE
Confidence 55432 2234555555444444444
No 120
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.10 E-value=9.7e-10 Score=63.91 Aligned_cols=65 Identities=14% Similarity=0.295 Sum_probs=49.7
Q ss_pred CeEEeCCCccEEeeCCeEEEEcccCCCCC-CcEEEEeCCEEecCCCCCeeEEee-cCCCCeEEEeeeC
Q psy2441 30 PQITEAPSTKVVEISHTTVLHCSASGNPP-PKISWIREMLPVDTSRNPRYNLLT-SGAPGTYIKIKPN 95 (212)
Q Consensus 30 p~~~~~~~~~~v~~g~~v~l~C~~~~~p~-~~v~W~k~g~~l~~~~~~~~~~~~-~~~~g~~l~i~~~ 95 (212)
|.+.+.|....+.+|++++|.|.+.+.|. ..+.|||||..+... ...+.+.. .+|.|.|.|....
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~-~~~l~i~~~~~dsG~Y~C~a~~ 67 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLETT-TNSYRIRAANNDSGEYRCQTQG 67 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeecc-CCeEEEeecccCCEEeEEECCC
Confidence 45677888899999999999999998776 469999999988332 24444433 3578889888764
No 121
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.09 E-value=8.3e-10 Score=66.80 Aligned_cols=44 Identities=30% Similarity=0.677 Sum_probs=36.5
Q ss_pred CeEEeCCCccEEe---eCCeEEEEcccCCCCCCcEEEEeCCEEecCC
Q psy2441 30 PQITEAPSTKVVE---ISHTTVLHCSASGNPPPKISWIREMLPVDTS 73 (212)
Q Consensus 30 p~~~~~~~~~~v~---~g~~v~l~C~~~~~p~~~v~W~k~g~~l~~~ 73 (212)
|.|...|.++.+. +|+.+.|.|.+.|.|.|.|+|+|+|.++...
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~ 48 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTE 48 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccC
Confidence 6677777776554 4789999999999999999999999988643
No 122
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.07 E-value=2.5e-09 Score=63.05 Aligned_cols=74 Identities=28% Similarity=0.403 Sum_probs=49.5
Q ss_pred cEEEEEeeee-CCCCceEEEeCCEEecCCCCCceEEcCCCC----ceeEEEcCCCCCCCeeEEEEEEcccccceecceEE
Q psy2441 129 TTVLHCSASG-NPPPKISWIREMLPVDTSRNPRYNLLTSGA----PGALQITNSIEEDQGKYECVAENEVGTEYSPSTML 203 (212)
Q Consensus 129 ~~~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l 203 (212)
.+.|.|.+.+ .|.+.+.|++++..+... ........++. .+.|.+.....+|.|.|+|.|.|..-..... ..+
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~-~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~-~s~ 78 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGA-TYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKE-TSV 78 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCc-eeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcE-EEE
Confidence 3689999987 688899999999887643 11111122221 2467787777788999999999976444333 443
Q ss_pred E
Q psy2441 204 Y 204 (212)
Q Consensus 204 ~ 204 (212)
.
T Consensus 79 ~ 79 (82)
T cd05759 79 T 79 (82)
T ss_pred E
Confidence 3
No 123
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.06 E-value=1.8e-09 Score=65.37 Aligned_cols=66 Identities=24% Similarity=0.478 Sum_probs=47.0
Q ss_pred CeEEeCCCccEEeeC---CeEEEEcccCCCCCCcEEEEeCCEEecCCCCCeeEEe-------e---cCCCCeEEEeeeC
Q psy2441 30 PQITEAPSTKVVEIS---HTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLL-------T---SGAPGTYIKIKPN 95 (212)
Q Consensus 30 p~~~~~~~~~~v~~g---~~v~l~C~~~~~p~~~v~W~k~g~~l~~~~~~~~~~~-------~---~~~~g~~l~i~~~ 95 (212)
|.|...|.+..+.+| +.+.|.|.+.|.|.+.++|+++|..+......++.+. . ..|.|.|.|.+.+
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N 80 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAIN 80 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEc
Confidence 667777888877666 5899999999999999999999998864322333221 1 1356666666655
No 124
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.05 E-value=9.7e-10 Score=65.77 Aligned_cols=67 Identities=24% Similarity=0.298 Sum_probs=48.7
Q ss_pred CCeEEeCCCccEEeeCCeEEEEcccCCCCCCcEEEEeCCEEecCCC-----CCeeEEeec--CCCCeEEEeeeC
Q psy2441 29 FPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSR-----NPRYNLLTS--GAPGTYIKIKPN 95 (212)
Q Consensus 29 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~l~~~~-----~~~~~~~~~--~~~g~~l~i~~~ 95 (212)
|+.+...|.+..+.+|+.+.|.|.+.|.|.|.+.|+|++..+.... ...+.+... +|.|.|.|...+
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N 74 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAEN 74 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEE
Confidence 4556677888899999999999999999999999999887654431 122233222 477777777665
No 125
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.05 E-value=7.2e-10 Score=65.82 Aligned_cols=42 Identities=26% Similarity=0.531 Sum_probs=37.4
Q ss_pred EEeCCCccEEeeCCeEEEEcccCCCCCCcEEEEeCCEEecCC
Q psy2441 32 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTS 73 (212)
Q Consensus 32 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~l~~~ 73 (212)
|...|.+..+.+|+.+.|.|.+.|.|.|.+.|+|+|.++...
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~ 43 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASE 43 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCC
Confidence 455778899999999999999999999999999999988654
No 126
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.02 E-value=2.1e-09 Score=65.74 Aligned_cols=37 Identities=22% Similarity=0.451 Sum_probs=33.1
Q ss_pred CccEEeeCCeEEEEcccCC-CCCCcEEEEeCCEEecCC
Q psy2441 37 STKVVEISHTTVLHCSASG-NPPPKISWIREMLPVDTS 73 (212)
Q Consensus 37 ~~~~v~~g~~v~l~C~~~~-~p~~~v~W~k~g~~l~~~ 73 (212)
..+.+.+|+++.|.|.+.| .|+|.+.|+|||.+|...
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~ 48 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNK 48 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCC
Confidence 4678899999999999999 899999999999999753
No 127
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.01 E-value=2.1e-09 Score=64.61 Aligned_cols=72 Identities=28% Similarity=0.583 Sum_probs=55.3
Q ss_pred CeEEeCCCccEEeeCCeEEEEcccCCCCCCcEEEEeCCEEecCCCCCeeEEeecCCCCeEEEeeeCCccceeEEe
Q psy2441 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTYIKIKPNLFSPLSVYS 104 (212)
Q Consensus 30 p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~g~~l~i~~~~~~~~~v~~ 104 (212)
|.|...+.+..+.+|+.+.|.|.+.+.|.+.+.|+++|..+... .++.+... +....|.|.++...+...|.
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~--~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~ 72 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSS--QRYQIESD-GGSSSLTIKNVTREDAGTYT 72 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESS--SSEEEEEE-TTEEEEEESSESGGGSEEEE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeee--eeeeeecc-cceeEEccCCCChhhCEEEE
Confidence 67788889999999999999999999999999999999999885 66666554 34455556555444444443
No 128
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.01 E-value=2.7e-09 Score=64.38 Aligned_cols=67 Identities=22% Similarity=0.381 Sum_probs=45.9
Q ss_pred CCCccEEeeCCeEEEEcccCCCCCCcEEEEeCCEEecCCCCCeeEEeecCCCCeEEEeeeCCccceeEE
Q psy2441 35 APSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTYIKIKPNLFSPLSVY 103 (212)
Q Consensus 35 ~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~g~~l~i~~~~~~~~~v~ 103 (212)
.|..+++.+|+++.|.|.+.|.|.|.+.|+|+|.++... .++.+...++....|.|.++...+...|
T Consensus 7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 73 (92)
T cd05737 7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALS--DHYNVKVEQGKYASLTIKGVSSEDSGKY 73 (92)
T ss_pred CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccC--CCEEEEEcCCCEEEEEEccCChhhCEEE
Confidence 355678999999999999999999999999999998765 4444432212223355555544444433
No 129
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=98.99 E-value=3.7e-09 Score=64.19 Aligned_cols=45 Identities=22% Similarity=0.602 Sum_probs=36.1
Q ss_pred CCeEEeCC--CccEEeeCCeEEEEcccCCCCCCcEEEEeCCEEecCC
Q psy2441 29 FPQITEAP--STKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTS 73 (212)
Q Consensus 29 ~p~~~~~~--~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~l~~~ 73 (212)
||.+...+ .+..+.+|+.+.|.|.+.|.|.|.+.|+|+|..+...
T Consensus 1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~ 47 (95)
T cd05730 1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESG 47 (95)
T ss_pred CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCC
Confidence 45554433 3457889999999999999999999999999888653
No 130
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.97 E-value=7.9e-09 Score=62.31 Aligned_cols=43 Identities=26% Similarity=0.509 Sum_probs=35.0
Q ss_pred CeEEeCCCccEEeeC---CeEEEEcccCCCCCCcEEEEeCCEEecC
Q psy2441 30 PQITEAPSTKVVEIS---HTTVLHCSASGNPPPKISWIREMLPVDT 72 (212)
Q Consensus 30 p~~~~~~~~~~v~~g---~~v~l~C~~~~~p~~~v~W~k~g~~l~~ 72 (212)
|.|...|....+.++ ..+.|.|.+.|.|.|.++|+|++.++..
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~ 47 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDL 47 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccC
Confidence 667777777666554 4899999999999999999999988753
No 131
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.95 E-value=7.2e-09 Score=63.65 Aligned_cols=71 Identities=15% Similarity=0.144 Sum_probs=51.3
Q ss_pred eeEecCCcEEEEEeeeeCCCCceEEEeCCEEe---------cC--------CCCCceEEcCCCCceeEEEcCCCCCCCee
Q psy2441 122 KVVEISHTTVLHCSASGNPPPKISWIREMLPV---------DT--------SRNPRYNLLTSGAPGALQITNSIEEDQGK 184 (212)
Q Consensus 122 ~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~---------~~--------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~ 184 (212)
..+.+|+++.|.|.........+.|+|+.... .. ....|..+..+ ++|.|.+++.+|+|.
T Consensus 8 ~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~n---gSL~I~~v~~~D~G~ 84 (105)
T cd05774 8 PQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPN---GSLLIQNVTQKDTGF 84 (105)
T ss_pred CcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCC---CcEEEecCCcccCEE
Confidence 44677999999998754444589999963211 00 02345555555 799999999999999
Q ss_pred EEEEEEccccc
Q psy2441 185 YECVAENEVGT 195 (212)
Q Consensus 185 y~C~a~n~~g~ 195 (212)
|.|.+.+....
T Consensus 85 Y~~~v~~~~~~ 95 (105)
T cd05774 85 YTLQTITTNFQ 95 (105)
T ss_pred EEEEEEeCCcc
Confidence 99999987643
No 132
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.94 E-value=7e-09 Score=62.96 Aligned_cols=42 Identities=36% Similarity=0.665 Sum_probs=36.9
Q ss_pred EEeCCCccEEeeCCeEEEEcccCCCCCCcEEEEeCCEEecCC
Q psy2441 32 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTS 73 (212)
Q Consensus 32 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~l~~~ 73 (212)
|...|.+..+.+|+++.|.|.+.+.|.|.+.|+|+|..+...
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~ 43 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLV 43 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccc
Confidence 455777888899999999999999999999999999988654
No 133
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.94 E-value=1.3e-08 Score=63.41 Aligned_cols=76 Identities=17% Similarity=0.278 Sum_probs=55.0
Q ss_pred CCcceeEecCCcEEEEEeeeeCCCCceEEEeCCEE---e---c--C----CCCCceEEcCC--CCceeEEEcCCCCCCCe
Q psy2441 118 APSTKVVEISHTTVLHCSASGNPPPKISWIREMLP---V---D--T----SRNPRYNLLTS--GAPGALQITNSIEEDQG 183 (212)
Q Consensus 118 ~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~---~---~--~----~~~~~~~~~~~--~~~~~l~i~~~~~~d~g 183 (212)
.+....+.+|+++.|.|.+.+.+...+.|++.... . . . ....++....+ .....|.|.+++.+|+|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG 83 (109)
T cd04983 4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSA 83 (109)
T ss_pred cCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCE
Confidence 44556788999999999998777789999984321 0 0 0 12345544332 23579999999999999
Q ss_pred eEEEEEEccc
Q psy2441 184 KYECVAENEV 193 (212)
Q Consensus 184 ~y~C~a~n~~ 193 (212)
.|.|.+.+..
T Consensus 84 ~Y~C~~~~~~ 93 (109)
T cd04983 84 VYFCALSESG 93 (109)
T ss_pred EEEEEEecCC
Confidence 9999998753
No 134
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.93 E-value=1.3e-08 Score=59.74 Aligned_cols=63 Identities=25% Similarity=0.438 Sum_probs=51.4
Q ss_pred ceeEecCCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEE
Q psy2441 121 TKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAE 190 (212)
Q Consensus 121 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~ 190 (212)
..++..|+++.|.|...++ .+.+.|++++..+..+ .++....+ .|.|..+..+|+|.|.|.+.
T Consensus 5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~--~r~~~~~~----GLlI~~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 5 NRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQ--FSYRVGTD----GLLILVTSPEHSGTYRCYSE 67 (85)
T ss_pred EEEEecCCCEEEECCCCCC-CccEEEEECCcccCCC--cceEEeCC----CCEEEECCHhhCEEEEEEEe
Confidence 4567889999999999776 4599999999988653 45554444 47788999999999999986
No 135
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=98.93 E-value=5.5e-09 Score=59.32 Aligned_cols=54 Identities=17% Similarity=0.311 Sum_probs=39.6
Q ss_pred CCeEEEEcccCCCCCCcEEEEeCCEEecCCC-----CCeeEEeecCCCCeEEEeeeCCc
Q psy2441 44 SHTTVLHCSASGNPPPKISWIREMLPVDTSR-----NPRYNLLTSGAPGTYIKIKPNLF 97 (212)
Q Consensus 44 g~~v~l~C~~~~~p~~~v~W~k~g~~l~~~~-----~~~~~~~~~~~~g~~l~i~~~~~ 97 (212)
|+.+.|.|.+.|.|.|.|.|+|+|.++.... ...+.+....+.|.|.|.+.+..
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~~d~G~Y~C~A~N~~ 59 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNIYESANYTCVAISSL 59 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEeccccCeeEEEEEEeCC
Confidence 6889999999999999999999998875431 12344444446777777776633
No 136
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.93 E-value=1.9e-08 Score=60.43 Aligned_cols=71 Identities=17% Similarity=0.296 Sum_probs=53.4
Q ss_pred ceeEecCCcEEEEEeeeeCCCCceEEEeCCEEec------CCCCCceEEcC-CCCceeEEEcCCCCCCCeeEEEEEEc
Q psy2441 121 TKVVEISHTTVLHCSASGNPPPKISWIREMLPVD------TSRNPRYNLLT-SGAPGALQITNSIEEDQGKYECVAEN 191 (212)
Q Consensus 121 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~------~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~a~n 191 (212)
..++.+|+++.|.|.+.+.....+.|++-+..+- ...+.|+.... ++...+|.|.++..+|+|.|.|.+..
T Consensus 6 nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 6 DVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred ceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 4678899999999999887666778876553321 01246776555 34457899999999999999999875
No 137
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.92 E-value=1.9e-08 Score=65.61 Aligned_cols=66 Identities=21% Similarity=0.233 Sum_probs=51.0
Q ss_pred ceeeEEEeeccCCCcceecccccCCCCCeEEeCCCccEEeeCCeEEEEcccCCC-CC-CcEEEEeCCEE
Q psy2441 3 IGTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGN-PP-PKISWIREMLP 69 (212)
Q Consensus 3 ~g~Y~C~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p~-~~v~W~k~g~~ 69 (212)
+|.|+|.+.+..+... ....+.+..+|.+.+.+......+|+.+.|.|.+.+. |. ..|.|+|+|..
T Consensus 13 ~G~Y~C~~~~~~~~~~-~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~ 80 (139)
T cd05771 13 EGTYICSVSTPPHQAQ-QIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG 80 (139)
T ss_pred CEEEEEEEEccCccee-eEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence 5999999988766644 3345556788998887776666689999999999884 54 48999999854
No 138
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.92 E-value=3e-08 Score=61.68 Aligned_cols=81 Identities=23% Similarity=0.401 Sum_probs=53.7
Q ss_pred cCCcEEEEEeeeeCC------------CCceEEEeCCE---Ee-----------cCCCCCceEEcC---CCCceeEEEcC
Q psy2441 126 ISHTTVLHCSASGNP------------PPKISWIREML---PV-----------DTSRNPRYNLLT---SGAPGALQITN 176 (212)
Q Consensus 126 ~g~~~~l~C~~~~~p------------~~~i~W~~~~~---~~-----------~~~~~~~~~~~~---~~~~~~l~i~~ 176 (212)
.|+++.|.|...... .+.|.|++... +. ......|+.+.. ..+..+|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 388999999986432 45899998421 00 011123555543 22358999999
Q ss_pred CCCCCCeeEEEEEEcccccceecceEEEEec
Q psy2441 177 SIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207 (212)
Q Consensus 177 ~~~~d~g~y~C~a~n~~g~~~~~~~~l~v~~ 207 (212)
++.+|+|.|.|.+.+........ +.|.|++
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~-v~l~v~g 110 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDT-VEVQVKG 110 (112)
T ss_pred cccccCEEEEEEEecCCCCceeE-EEEEEEe
Confidence 99999999999999765555444 5555553
No 139
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=98.92 E-value=7.7e-09 Score=63.03 Aligned_cols=45 Identities=29% Similarity=0.586 Sum_probs=37.4
Q ss_pred CCCeEEeCCCccEEeeCCeEEEEcccCCCCCCcEEEEeCCEEecC
Q psy2441 28 GFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDT 72 (212)
Q Consensus 28 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~l~~ 72 (212)
.+|.|...+....+..|+.+.|.|.+.|.|.|.++|++++..+..
T Consensus 1 ~~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~ 45 (97)
T cd05869 1 AKPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISS 45 (97)
T ss_pred CCceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccC
Confidence 367787777666666789999999999999999999999877643
No 140
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.91 E-value=2.1e-08 Score=62.13 Aligned_cols=75 Identities=21% Similarity=0.339 Sum_probs=52.7
Q ss_pred CCcceeEecCCcEEEEEeeeeCC-CCceEEEeCCE--E---ec-------CCCCCceEEcCCCCceeEEEcCCCCCCCee
Q psy2441 118 APSTKVVEISHTTVLHCSASGNP-PPKISWIREML--P---VD-------TSRNPRYNLLTSGAPGALQITNSIEEDQGK 184 (212)
Q Consensus 118 ~~~~~~~~~g~~~~l~C~~~~~p-~~~i~W~~~~~--~---~~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~ 184 (212)
.|....+.+|+++.|.|.+.+.. ...+.|++... . +. .....++....+.....|.|.++..+|+|.
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~ 85 (106)
T cd04980 6 SPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAV 85 (106)
T ss_pred CCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEE
Confidence 45557788999999999997665 56899997431 1 10 001234554444345689999999999999
Q ss_pred EEEEEEcc
Q psy2441 185 YECVAENE 192 (212)
Q Consensus 185 y~C~a~n~ 192 (212)
|.|.+.+.
T Consensus 86 Y~Ca~~~~ 93 (106)
T cd04980 86 YYCQQYGT 93 (106)
T ss_pred EEEEEeCC
Confidence 99998754
No 141
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.91 E-value=3.6e-08 Score=61.15 Aligned_cols=81 Identities=23% Similarity=0.326 Sum_probs=56.0
Q ss_pred cCCcEEEEEeeeeCC------CCceEEEeCCE---E-----ecC--------CCCCceEEcCC-CCceeEEEcCCCCCCC
Q psy2441 126 ISHTTVLHCSASGNP------PPKISWIREML---P-----VDT--------SRNPRYNLLTS-GAPGALQITNSIEEDQ 182 (212)
Q Consensus 126 ~g~~~~l~C~~~~~p------~~~i~W~~~~~---~-----~~~--------~~~~~~~~~~~-~~~~~l~i~~~~~~d~ 182 (212)
.|+++.|.|.....| ...|.|++... + ... ....|+.+... ....+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 389999999987653 34799998531 0 000 01234444322 2246899999999999
Q ss_pred eeEEEEEEcccccceecceEEEEec
Q psy2441 183 GKYECVAENEVGTEYSPSTMLYVKG 207 (212)
Q Consensus 183 g~y~C~a~n~~g~~~~~~~~l~v~~ 207 (212)
|.|.|.+.+..+..... +.|.|++
T Consensus 81 G~Y~C~v~~~~~~~~~~-~~l~v~~ 104 (106)
T cd05877 81 GRYRCEVIDGLEDESVV-VALRLRG 104 (106)
T ss_pred EEEEEEEEecccceEEE-EEEEEEE
Confidence 99999999988877666 7777764
No 142
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=98.91 E-value=1e-08 Score=59.94 Aligned_cols=57 Identities=12% Similarity=0.288 Sum_probs=40.6
Q ss_pred CCccEEeeCCeEEEEcccCCCCCCcEEEEeCCEEecCCCCCeeEEe-------ec--CCCCeEEEeeeC
Q psy2441 36 PSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLL-------TS--GAPGTYIKIKPN 95 (212)
Q Consensus 36 ~~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~l~~~~~~~~~~~-------~~--~~~g~~l~i~~~ 95 (212)
|.+..+.+|+.+.|.|.+.+. .+.+.|+|+|.+|... .++.+. .. +|+|.|.|...+
T Consensus 1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~--~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n 66 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGEN--NRTRITGEEVQIKDAVPRDSGLYACVTSS 66 (79)
T ss_pred CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCC--ceEEEeCCEEEECCCChhhCEEEEEEEeC
Confidence 456788999999999999886 5689999999988764 344332 11 355666665544
No 143
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.91 E-value=3.6e-09 Score=61.08 Aligned_cols=31 Identities=26% Similarity=0.528 Sum_probs=28.2
Q ss_pred eCCeEEEEcccCCCCCCcEEEEeCCEEecCC
Q psy2441 43 ISHTTVLHCSASGNPPPKISWIREMLPVDTS 73 (212)
Q Consensus 43 ~g~~v~l~C~~~~~p~~~v~W~k~g~~l~~~ 73 (212)
||+.+.|.|.+.|.|.|.+.|+|+|..+...
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~ 31 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVD 31 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCC
Confidence 6899999999999999999999999887653
No 144
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.91 E-value=3.7e-09 Score=60.71 Aligned_cols=50 Identities=20% Similarity=0.443 Sum_probs=36.5
Q ss_pred CCeEEEEcccCCCCCCcEEEEeCCEEecCCCCCeeEEeec----------CCCCeEEEeeeC
Q psy2441 44 SHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTS----------GAPGTYIKIKPN 95 (212)
Q Consensus 44 g~~v~l~C~~~~~p~~~v~W~k~g~~l~~~~~~~~~~~~~----------~~~g~~l~i~~~ 95 (212)
|+.+.|.|.+.|.|.|.|.|+|++..+... .++.+... +|.|.|.|.+.+
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~--~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N 60 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNN--SRISIWDDGSLEILNITKLDEGSYTCFAEN 60 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccC--CCEEEcCCCEEEECcCChhHCEEEEEEEEC
Confidence 688999999999999999999999887654 45554321 255555555554
No 145
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.90 E-value=1.1e-08 Score=61.47 Aligned_cols=86 Identities=22% Similarity=0.293 Sum_probs=57.7
Q ss_pred CccccCCcceeEecCCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcc
Q psy2441 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENE 192 (212)
Q Consensus 113 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~ 192 (212)
|.+...+. ..+..|+.++|.|... .+...+.|+++|...... . .........+.|.+++.+|+|.|.|.+.+.
T Consensus 3 P~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~---~--~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 3 PSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK---K--PPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc---c--cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 45555554 3577899999999885 566789999988654321 0 011112368999999999999999999886
Q ss_pred c-c-cceecceEEEE
Q psy2441 193 V-G-TEYSPSTMLYV 205 (212)
Q Consensus 193 ~-g-~~~~~~~~l~v 205 (212)
. + +..++.+.|.|
T Consensus 76 ~~~~S~~Sd~lel~V 90 (91)
T cd05751 76 VALWSEPSDPLELVV 90 (91)
T ss_pred CCccCCCCCcEEEEe
Confidence 2 2 33333355544
No 146
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=98.90 E-value=8.6e-09 Score=63.08 Aligned_cols=36 Identities=14% Similarity=0.434 Sum_probs=32.7
Q ss_pred ccEEeeCCeEEEEcccCCCCCCcEEEEeCCEEecCC
Q psy2441 38 TKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTS 73 (212)
Q Consensus 38 ~~~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~l~~~ 73 (212)
..++..|+.+.|.|.+.|+|+|.+.|+|||.+|...
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~ 47 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIEN 47 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCC
Confidence 567888999999999999999999999999998754
No 147
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.87 E-value=1.8e-08 Score=60.88 Aligned_cols=76 Identities=12% Similarity=0.170 Sum_probs=52.1
Q ss_pred eeEecCCcEEEEEeee-----------eCCCCceEEEeCCEEecCCCC---CceEEcCCCCceeEEEcCCCCCCCeeEEE
Q psy2441 122 KVVEISHTTVLHCSAS-----------GNPPPKISWIREMLPVDTSRN---PRYNLLTSGAPGALQITNSIEEDQGKYEC 187 (212)
Q Consensus 122 ~~~~~g~~~~l~C~~~-----------~~p~~~i~W~~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 187 (212)
..+.+|+.+.|.|... ......+.|+|++..+..... ....+...+ ..|.|.++..+|+|.|+|
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~--~~Lwf~Pa~~eDSG~Y~C 87 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEE--DSIWFRPAELQDSGLYTC 87 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeC--CEEEEEeCChhhCeEEEE
Confidence 5577899999999862 112337999999755544311 101122222 689999999999999999
Q ss_pred EEEcccccceec
Q psy2441 188 VAENEVGTEYSP 199 (212)
Q Consensus 188 ~a~n~~g~~~~~ 199 (212)
.+.|........
T Consensus 88 ~~rN~t~C~~~~ 99 (104)
T cd05896 88 VLRNSTYCMKVS 99 (104)
T ss_pred EECCCCcceEEE
Confidence 999976555433
No 148
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.87 E-value=7.1e-09 Score=60.12 Aligned_cols=29 Identities=38% Similarity=0.875 Sum_probs=26.7
Q ss_pred CCeEEEEcccCCCCCCcEEEEeCCEEecC
Q psy2441 44 SHTTVLHCSASGNPPPKISWIREMLPVDT 72 (212)
Q Consensus 44 g~~v~l~C~~~~~p~~~v~W~k~g~~l~~ 72 (212)
|+++.|.|.+.|.|.|+|+|+|+|.++..
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~ 29 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEI 29 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccc
Confidence 78899999999999999999999998854
No 149
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=98.87 E-value=2.4e-08 Score=60.49 Aligned_cols=73 Identities=14% Similarity=0.334 Sum_probs=48.5
Q ss_pred EEeCCCccEEeeCCeEEEEcccCCCCC-CcEEEEe-CCEEecCCCCCeeEEeecCCCCeEEEeeeCCccceeEEee
Q psy2441 32 ITEAPSTKVVEISHTTVLHCSASGNPP-PKISWIR-EMLPVDTSRNPRYNLLTSGAPGTYIKIKPNLFSPLSVYSA 105 (212)
Q Consensus 32 ~~~~~~~~~v~~g~~v~l~C~~~~~p~-~~v~W~k-~g~~l~~~~~~~~~~~~~~~~g~~l~i~~~~~~~~~v~~~ 105 (212)
+.+.|....+.+|+.+.|.|.+.|.|. |.+.|++ ++..+... ..++.+...++....|.|.++...+...|.+
T Consensus 3 ~~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~-~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC 77 (96)
T cd05865 3 VDIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPN-QQRISVVRNDDYSSTLTIYNANIDDAGIYKC 77 (96)
T ss_pred EEEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCcccc-CCeEEEEeCCCCceEEEEeccChhhCEEEEE
Confidence 446777888999999999999999985 6999998 77766542 1355444332223445555555444444443
No 150
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.87 E-value=2.5e-09 Score=61.81 Aligned_cols=73 Identities=40% Similarity=0.688 Sum_probs=46.7
Q ss_pred CccccCCcceeEecCCcEEEEEeeeeCC-CCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEc
Q psy2441 113 PQITEAPSTKVVEISHTTVLHCSASGNP-PPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAEN 191 (212)
Q Consensus 113 p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n 191 (212)
|.+...+.......+. +.|.|.+.+.+ .+.+.|+ +....... ........+ +.|.+.++..+|.|.|.|.|.|
T Consensus 2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~~-~~~~~~~~~---~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFNS-NSRGSSSSN---STLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp SEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEEE-EEEEEEEEE---EEEEESSCCGGGTEEEEEEEEE
T ss_pred CEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCceee-eeeecccee---eEEEEccCCHHhCcEEEEEEEC
Confidence 4444444444333333 99999998877 7799999 11111110 011112222 7899999999999999999987
No 151
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.86 E-value=4.9e-08 Score=59.57 Aligned_cols=37 Identities=30% Similarity=0.618 Sum_probs=32.5
Q ss_pred CCeEEeCCCccEEeeCCeEEEEcccCCCCCCcEEEEeC
Q psy2441 29 FPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE 66 (212)
Q Consensus 29 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~ 66 (212)
+|.+.. +.+..+.+|++++|.|.+.|.|.|.|.|||+
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~ 38 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRA 38 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEEC
Confidence 577654 6688999999999999999999999999994
No 152
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=98.86 E-value=3.1e-08 Score=58.85 Aligned_cols=65 Identities=22% Similarity=0.269 Sum_probs=44.8
Q ss_pred ccEEeeCCeEEEEcccCCCCCCcEEEEeCCEEecCCCCCeeEEeecCCCCeEEEeeeCCccceeEEe
Q psy2441 38 TKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTYIKIKPNLFSPLSVYS 104 (212)
Q Consensus 38 ~~~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~g~~l~i~~~~~~~~~v~~ 104 (212)
.+.+.+|+.+.|.|.+.|.|.|.+.|+|++.++... ..++.+... +....|.|.++...+...|.
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~-~~r~~~~~~-~~~~~L~I~~~~~~D~G~Y~ 68 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTET-EGRVRVESY-KDLSSFVIEGAEREDEGVYT 68 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccC-CCeEEEEEc-CCeEEEEECCCccCcCEEEE
Confidence 457889999999999999999999999999998653 235555433 22334555555444444443
No 153
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.86 E-value=5.4e-08 Score=60.32 Aligned_cols=81 Identities=26% Similarity=0.412 Sum_probs=54.2
Q ss_pred cCCcEEEEEeeeeCC------CCceEEEeCC---E---Eec--CC--------CCCceEEc-CCCCceeEEEcCCCCCCC
Q psy2441 126 ISHTTVLHCSASGNP------PPKISWIREM---L---PVD--TS--------RNPRYNLL-TSGAPGALQITNSIEEDQ 182 (212)
Q Consensus 126 ~g~~~~l~C~~~~~p------~~~i~W~~~~---~---~~~--~~--------~~~~~~~~-~~~~~~~l~i~~~~~~d~ 182 (212)
.|+++.|.|.....+ ...|.|++.. . .+. .. ...++... ...+..+|.|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 389999999987653 4689999862 1 110 00 01122221 122358999999999999
Q ss_pred eeEEEEEEcccccceecceEEEEec
Q psy2441 183 GKYECVAENEVGTEYSPSTMLYVKG 207 (212)
Q Consensus 183 g~y~C~a~n~~g~~~~~~~~l~v~~ 207 (212)
|.|.|.+.+..+..... +.|.|.+
T Consensus 81 G~Y~C~v~~~~~~~~~~-v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDT-VELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEE-EEEEEEE
Confidence 99999999876665555 7777654
No 154
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.86 E-value=1.2e-07 Score=59.33 Aligned_cols=84 Identities=15% Similarity=0.207 Sum_probs=54.7
Q ss_pred ceeEecCCcEEEEEeeeeCC----CCceEEEe---------------CCEEecC---CCCCceEEcCC--CCceeEEEcC
Q psy2441 121 TKVVEISHTTVLHCSASGNP----PPKISWIR---------------EMLPVDT---SRNPRYNLLTS--GAPGALQITN 176 (212)
Q Consensus 121 ~~~~~~g~~~~l~C~~~~~p----~~~i~W~~---------------~~~~~~~---~~~~~~~~~~~--~~~~~l~i~~ 176 (212)
...+..|+.+.|.|...... ...+.|.+ ++..... ....|+.+..+ .+..+|.|.+
T Consensus 7 ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~n 86 (116)
T cd05879 7 EVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHN 86 (116)
T ss_pred eEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEcc
Confidence 34577899999999986543 35899943 2322211 01235544322 2357999999
Q ss_pred CCCCCCeeEEEEEEcccccceecceEEEE
Q psy2441 177 SIEEDQGKYECVAENEVGTEYSPSTMLYV 205 (212)
Q Consensus 177 ~~~~d~g~y~C~a~n~~g~~~~~~~~l~v 205 (212)
++.+|.|.|+|.+.|..+..... ..+.+
T Consensus 87 v~~sD~G~Y~C~v~n~p~~~~~~-~~~~l 114 (116)
T cd05879 87 LDYTDNGTFTCDVKNPPDIVGKS-SQVTL 114 (116)
T ss_pred CCcccCEEEEEEEEcCCCcCCce-eEEEE
Confidence 99999999999999976644333 44433
No 155
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.85 E-value=2.7e-08 Score=62.13 Aligned_cols=74 Identities=18% Similarity=0.342 Sum_probs=52.9
Q ss_pred CCcceeEecCCcEEEEEeeeeCCCCceEEEeCCE--Eec--------------CCCCCceEEcCCC-CceeEEEcCCCCC
Q psy2441 118 APSTKVVEISHTTVLHCSASGNPPPKISWIREML--PVD--------------TSRNPRYNLLTSG-APGALQITNSIEE 180 (212)
Q Consensus 118 ~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~--~~~--------------~~~~~~~~~~~~~-~~~~l~i~~~~~~ 180 (212)
.|....+.+|+++.|.|.+.+ +.+.+.|++... ... .....++....+. ...+|.|.++..+
T Consensus 4 ~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~ 82 (110)
T cd05899 4 SPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPE 82 (110)
T ss_pred CCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChh
Confidence 455567889999999999977 667899998532 111 0012344443322 3578999999999
Q ss_pred CCeeEEEEEEcc
Q psy2441 181 DQGKYECVAENE 192 (212)
Q Consensus 181 d~g~y~C~a~n~ 192 (212)
|+|.|.|.+.+.
T Consensus 83 Dsg~Y~Ca~~~~ 94 (110)
T cd05899 83 DSAVYLCASSLG 94 (110)
T ss_pred hCEEEEEEeeCC
Confidence 999999999764
No 156
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.83 E-value=3.7e-08 Score=60.15 Aligned_cols=53 Identities=25% Similarity=0.475 Sum_probs=41.0
Q ss_pred CCeEEeCCCccEEeeCCeEEEEcccCCCCCC-cEEEEeCCEEecCCCCCeeEEee
Q psy2441 29 FPQITEAPSTKVVEISHTTVLHCSASGNPPP-KISWIREMLPVDTSRNPRYNLLT 82 (212)
Q Consensus 29 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~-~v~W~k~g~~l~~~~~~~~~~~~ 82 (212)
||.+. .+....+.+|+.+.|.|.+.|.|.| .|.|++++..+......++.+..
T Consensus 2 pp~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~ 55 (98)
T cd05758 2 PPIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVET 55 (98)
T ss_pred CCeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEE
Confidence 55553 4567778999999999999999998 59999999988764334565543
No 157
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.83 E-value=2.9e-08 Score=59.88 Aligned_cols=74 Identities=20% Similarity=0.261 Sum_probs=52.1
Q ss_pred CCcEEEEEeeeeCCCCceEEEeCCEEecC---------C-------CCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEE
Q psy2441 127 SHTTVLHCSASGNPPPKISWIREMLPVDT---------S-------RNPRYNLLTSGAPGALQITNSIEEDQGKYECVAE 190 (212)
Q Consensus 127 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~---------~-------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~ 190 (212)
|+++.|.|.........+.|+++...... . ...|+.+..+ .+|.|.+++.+|+|.|.|.+.
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~---~sL~I~~l~~~DsG~Y~c~v~ 77 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN---GSLLIQNLTKEDSGTYTLQII 77 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC---ceEEEccCCchhcEEEEEEEE
Confidence 78999999987766669999986532211 0 1234445444 799999999999999999998
Q ss_pred cccccceecceEE
Q psy2441 191 NEVGTEYSPSTML 203 (212)
Q Consensus 191 n~~g~~~~~~~~l 203 (212)
...|......+.|
T Consensus 78 ~~~~~~~~~~~~l 90 (92)
T cd05741 78 STNGVTENAKFFL 90 (92)
T ss_pred cCCCcEEEEEEEE
Confidence 8765444332444
No 158
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=98.82 E-value=2.8e-08 Score=59.64 Aligned_cols=37 Identities=19% Similarity=0.308 Sum_probs=32.6
Q ss_pred CCCccEEeeCCeEEEEcccCCCCCCcEEEEeCCEEecC
Q psy2441 35 APSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDT 72 (212)
Q Consensus 35 ~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~l~~ 72 (212)
.+.+..+.+|++++|.|.+.|. .|.+.|+|++.++..
T Consensus 9 ~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~ 45 (91)
T cd05740 9 SVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVP 45 (91)
T ss_pred ccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCC
Confidence 4456789999999999999999 999999999988754
No 159
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=98.82 E-value=3.9e-08 Score=59.00 Aligned_cols=39 Identities=36% Similarity=0.642 Sum_probs=34.3
Q ss_pred eCCCccEEeeCCeEEEEcccCCCCCCcEEEEeCCEEecC
Q psy2441 34 EAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDT 72 (212)
Q Consensus 34 ~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~l~~ 72 (212)
..|.+..+.+|+.+.|.|.+.|.|.|.+.|+++|..+..
T Consensus 5 ~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~ 43 (90)
T cd04972 5 DGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQ 43 (90)
T ss_pred cCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccC
Confidence 455667789999999999999999999999999988754
No 160
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=98.82 E-value=7e-09 Score=58.25 Aligned_cols=50 Identities=18% Similarity=0.365 Sum_probs=38.4
Q ss_pred EEEEcccCCCCCCcEEEEeCCEEecCCC-CCeeEEeec--CCCCeEEEeeeCC
Q psy2441 47 TVLHCSASGNPPPKISWIREMLPVDTSR-NPRYNLLTS--GAPGTYIKIKPNL 96 (212)
Q Consensus 47 v~l~C~~~~~p~~~v~W~k~g~~l~~~~-~~~~~~~~~--~~~g~~l~i~~~~ 96 (212)
+.|.|.+.|+|.|.+.|||||.+|.... ...+.+... +|.|.|.|...+.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~L~i~~v~~~D~G~YtC~a~N~ 53 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGKHSQHSLQIKDVTEASAGTYTLVLWNS 53 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECcccCCcCEEEECCCCHHHCEEEEEEEEEC
Confidence 4799999999999999999999996331 234455444 4889999988763
No 161
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.81 E-value=4.6e-08 Score=58.17 Aligned_cols=38 Identities=34% Similarity=0.768 Sum_probs=33.7
Q ss_pred CCCccEEeeCCeEEEEccc-CCCCCCcEEEEeCCEEecC
Q psy2441 35 APSTKVVEISHTTVLHCSA-SGNPPPKISWIREMLPVDT 72 (212)
Q Consensus 35 ~~~~~~v~~g~~v~l~C~~-~~~p~~~v~W~k~g~~l~~ 72 (212)
.|.+..+.+|+++.|.|.+ .+.|.+.+.|+|+|..+..
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~ 40 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNL 40 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCC
Confidence 4667889999999999998 7899999999999988765
No 162
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.80 E-value=1.1e-07 Score=61.91 Aligned_cols=107 Identities=19% Similarity=0.243 Sum_probs=61.6
Q ss_pred CCCCeEEEeeeCC--ccceeEEeecCCCCCCCccccCCcceeEecCCcEEEEEeeeeC-CC-CceEEEeCCEEecC----
Q psy2441 84 GAPGTYIKIKPNL--FSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGN-PP-PKISWIREMLPVDT---- 155 (212)
Q Consensus 84 ~~~g~~l~i~~~~--~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~---- 155 (212)
.|+|.|.|..... .....+...... +|.+...+.......|+.+.|.|.+.+. |. +.|.|++++.....
T Consensus 11 ~D~G~Y~C~~~~~~~~~~~~~~l~v~~---~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~ 87 (139)
T cd05771 11 HDEGTYICSVSTPPHQAQQIIQLSVSE---PPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVS 87 (139)
T ss_pred HHCEEEEEEEEccCcceeeEEEEEEec---CCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCCccceec
Confidence 3789999987652 111112211112 2666555554444468999999999885 44 48999998754221
Q ss_pred -CC--CCceEEcCCCC---ceeEEEcCCCCCCCeeEEEEEEccc
Q psy2441 156 -SR--NPRYNLLTSGA---PGALQITNSIEEDQGKYECVAENEV 193 (212)
Q Consensus 156 -~~--~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~a~n~~ 193 (212)
.. ........++. .+.|.+.....++.+.|.|.+.+..
T Consensus 88 ~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 88 LSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred cCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 00 00111112211 2566666555566779999998753
No 163
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.80 E-value=5.6e-08 Score=58.02 Aligned_cols=29 Identities=21% Similarity=0.527 Sum_probs=26.5
Q ss_pred CCeEEEEcccCCCCCCcEEEEeCCEEecC
Q psy2441 44 SHTTVLHCSASGNPPPKISWIREMLPVDT 72 (212)
Q Consensus 44 g~~v~l~C~~~~~p~~~v~W~k~g~~l~~ 72 (212)
|+.+.|.|.+.|.|++.+.|+|++..+..
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~ 29 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINP 29 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCC
Confidence 78999999999999999999999988754
No 164
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.80 E-value=2.7e-08 Score=57.71 Aligned_cols=30 Identities=30% Similarity=0.708 Sum_probs=27.2
Q ss_pred CCeEEEEcccCCCCCCcEEEEeCCEEecCC
Q psy2441 44 SHTTVLHCSASGNPPPKISWIREMLPVDTS 73 (212)
Q Consensus 44 g~~v~l~C~~~~~p~~~v~W~k~g~~l~~~ 73 (212)
|+++.|.|.+.|.|.|.++|+|+|.++...
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~ 30 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGT 30 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCC
Confidence 789999999999999999999999988653
No 165
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.77 E-value=2e-07 Score=58.07 Aligned_cols=80 Identities=25% Similarity=0.417 Sum_probs=53.9
Q ss_pred CCcEEEEEeeeeCC----------CCceEEEeCC--EEec------------CCCCCceEEcC---CCCceeEEEcCCCC
Q psy2441 127 SHTTVLHCSASGNP----------PPKISWIREM--LPVD------------TSRNPRYNLLT---SGAPGALQITNSIE 179 (212)
Q Consensus 127 g~~~~l~C~~~~~p----------~~~i~W~~~~--~~~~------------~~~~~~~~~~~---~~~~~~l~i~~~~~ 179 (212)
|+++.|.|.....+ ...|.|++.. .... .....|+.+.. +....+|.|.+++.
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~ 81 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS 81 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence 88999999986644 2579999852 1110 01123554432 22357899999999
Q ss_pred CCCeeEEEEEEcccccceecceEEEEec
Q psy2441 180 EDQGKYECVAENEVGTEYSPSTMLYVKG 207 (212)
Q Consensus 180 ~d~g~y~C~a~n~~g~~~~~~~~l~v~~ 207 (212)
+|+|.|.|.+.......... +.|.|.+
T Consensus 82 sD~G~Y~C~v~~~~~~~~~~-v~l~V~g 108 (110)
T cd05878 82 SDSGVYRCEVMHGIEDEQDT-VPLEVTG 108 (110)
T ss_pred hhCEEEEEEEEeCCCcceEE-EEEEEEE
Confidence 99999999998865555555 6666654
No 166
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.77 E-value=5.7e-08 Score=58.44 Aligned_cols=43 Identities=28% Similarity=0.647 Sum_probs=34.0
Q ss_pred CeEEeCCCccEEee---CCeEEEEcccCCCCCCcEEEEeCCEEecC
Q psy2441 30 PQITEAPSTKVVEI---SHTTVLHCSASGNPPPKISWIREMLPVDT 72 (212)
Q Consensus 30 p~~~~~~~~~~v~~---g~~v~l~C~~~~~p~~~v~W~k~g~~l~~ 72 (212)
|.|...|.+..+.+ |..+.|.|.+.|.|.+.++|+|++..+..
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~ 47 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDD 47 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCC
Confidence 55666666665544 35799999999999999999999998843
No 167
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.77 E-value=2.4e-08 Score=57.06 Aligned_cols=48 Identities=23% Similarity=0.556 Sum_probs=34.9
Q ss_pred eEEEEcccCCCCCCcEEEEeCCEEecCCCCCeeEEeec----------CCCCeEEEeeeC
Q psy2441 46 TTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTS----------GAPGTYIKIKPN 95 (212)
Q Consensus 46 ~v~l~C~~~~~p~~~v~W~k~g~~l~~~~~~~~~~~~~----------~~~g~~l~i~~~ 95 (212)
++.|.|.+.|.|.|.++|+|+|..+... .++.+... +|.|.|.|.+.+
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~--~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N 58 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPS--DYFKIVKEHNLQVLGLVKSDEGFYQCIAEN 58 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCC--CCEEEEecCCEEEEcCCcccCEEEEEEEEc
Confidence 4789999999999999999999887654 33333221 366666666655
No 168
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.76 E-value=1e-07 Score=58.17 Aligned_cols=70 Identities=20% Similarity=0.378 Sum_probs=49.4
Q ss_pred eEecCCcEEEEEeeeeC--CCCceEEEeCCE--Eec----------CCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEE
Q psy2441 123 VVEISHTTVLHCSASGN--PPPKISWIREML--PVD----------TSRNPRYNLLTSGAPGALQITNSIEEDQGKYECV 188 (212)
Q Consensus 123 ~~~~g~~~~l~C~~~~~--p~~~i~W~~~~~--~~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 188 (212)
.+.+|+++.|.|..... ....+.|++... ... .....++....+.....|.|.++..+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 35679999999998765 456799998432 110 0012355554444457899999999999999999
Q ss_pred EEcc
Q psy2441 189 AENE 192 (212)
Q Consensus 189 a~n~ 192 (212)
+.+.
T Consensus 82 ~~~~ 85 (98)
T cd04984 82 VWDS 85 (98)
T ss_pred EccC
Confidence 8753
No 169
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.76 E-value=5.2e-08 Score=59.26 Aligned_cols=78 Identities=19% Similarity=0.229 Sum_probs=52.5
Q ss_pred cCCcEEEEEeeee-CCCCceEEEeCCEEecCC---------------CCCceEEcCCCCceeEEEcCCCCCCCeeEEEEE
Q psy2441 126 ISHTTVLHCSASG-NPPPKISWIREMLPVDTS---------------RNPRYNLLTSGAPGALQITNSIEEDQGKYECVA 189 (212)
Q Consensus 126 ~g~~~~l~C~~~~-~p~~~i~W~~~~~~~~~~---------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a 189 (212)
.|+++.|.|.... .....+.|+++....... ...|+.+..+ ..+|.|.+++.+|+|.|.|.+
T Consensus 3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~--~~sL~I~~~~~~DsG~Y~c~v 80 (97)
T cd05775 3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQN--DYSLQISNLKMEDAGSYRAEI 80 (97)
T ss_pred cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCC--ceeEEECCCchHHCEEEEEEE
Confidence 5999999998755 444589999864322110 0123333222 388999999999999999999
Q ss_pred EcccccceecceEEEE
Q psy2441 190 ENEVGTEYSPSTMLYV 205 (212)
Q Consensus 190 ~n~~g~~~~~~~~l~v 205 (212)
.+..|......+.|.|
T Consensus 81 ~~~~~~~~~~~f~L~v 96 (97)
T cd05775 81 NTKNGVTITKEFTLHI 96 (97)
T ss_pred EcCCCCeEEEEEEEEe
Confidence 9887666444344443
No 170
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=98.76 E-value=7.3e-08 Score=58.57 Aligned_cols=43 Identities=28% Similarity=0.492 Sum_probs=36.0
Q ss_pred CCeEEeCCCccEEeeCCeEEEEcccCCCCCCcEEEEeCCEEecC
Q psy2441 29 FPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDT 72 (212)
Q Consensus 29 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~l~~ 72 (212)
+|.+. .+.+..+.+|+++.|.|.+.|.|.|.+.|++++..+..
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~ 44 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSE 44 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCC
Confidence 56664 45578899999999999999999999999999866543
No 171
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=98.75 E-value=8.3e-08 Score=57.79 Aligned_cols=39 Identities=26% Similarity=0.558 Sum_probs=33.9
Q ss_pred CCCccEEeeCCeEEEEcccCCCCCCcEEEEeCCEEecCC
Q psy2441 35 APSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTS 73 (212)
Q Consensus 35 ~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~l~~~ 73 (212)
.|..+.+.+|+.+.|.|.+.+.|.|.+.|||++..+...
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~ 45 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELS 45 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCC
Confidence 355778899999999999999999999999999887654
No 172
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.74 E-value=9.3e-08 Score=59.13 Aligned_cols=72 Identities=22% Similarity=0.306 Sum_probs=50.9
Q ss_pred eEecCCcEEEEEeeeeC-CCCceEEEeCCEE-----ec----------CCCCCceEEcCCC--CceeEEEcCCCCCCCee
Q psy2441 123 VVEISHTTVLHCSASGN-PPPKISWIREMLP-----VD----------TSRNPRYNLLTSG--APGALQITNSIEEDQGK 184 (212)
Q Consensus 123 ~~~~g~~~~l~C~~~~~-p~~~i~W~~~~~~-----~~----------~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~ 184 (212)
.+.+|+.+.|.|.+... +...+.|++.... +. .....++....+. ...+|.|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 46789999999999876 5678999984321 00 0112344333222 35689999999999999
Q ss_pred EEEEEEcccc
Q psy2441 185 YECVAENEVG 194 (212)
Q Consensus 185 y~C~a~n~~g 194 (212)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999988664
No 173
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.73 E-value=9.8e-08 Score=57.31 Aligned_cols=70 Identities=16% Similarity=0.309 Sum_probs=47.9
Q ss_pred EEeCCCccEEeeCCeEEEEcccCCCCCCcEEEEe-CCEEecCCCCCeeEEeecCCCCeEEEeeeCCccceeEEee
Q psy2441 32 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR-EMLPVDTSRNPRYNLLTSGAPGTYIKIKPNLFSPLSVYSA 105 (212)
Q Consensus 32 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~k-~g~~l~~~~~~~~~~~~~~~~g~~l~i~~~~~~~~~v~~~ 105 (212)
+.+.+.+..+.+|+.+.|.|.+.|.|. .+.||+ ++.++... .|+.+... +....|.|.++...+...|.+
T Consensus 3 ~~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~--~r~~~~~~-g~~~~L~I~~v~~~D~G~Y~C 73 (92)
T cd05866 3 VSISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSS--QRVVVQKE-GVRSRLTIYNANIEDAGIYRC 73 (92)
T ss_pred EEEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCC--CCEEEEeC-CCeeEEEEecCChHHCEEEEE
Confidence 345677888999999999999999998 899998 57777654 55555432 223345555554444444443
No 174
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.73 E-value=2e-07 Score=56.92 Aligned_cols=77 Identities=25% Similarity=0.378 Sum_probs=49.8
Q ss_pred CcEEEEEeeeeCC---CCceEEEeCCEE----e-----------cCCCCCceEEcCCC-CceeEEEcCCCCCCCeeEEEE
Q psy2441 128 HTTVLHCSASGNP---PPKISWIREMLP----V-----------DTSRNPRYNLLTSG-APGALQITNSIEEDQGKYECV 188 (212)
Q Consensus 128 ~~~~l~C~~~~~p---~~~i~W~~~~~~----~-----------~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~ 188 (212)
+++.|.|.....+ ...|.|++.... + ......|+.+..+. ...+|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4689999987654 347999985421 0 01112333333211 247999999999999999999
Q ss_pred EEc-ccccceecceEEEE
Q psy2441 189 AEN-EVGTEYSPSTMLYV 205 (212)
Q Consensus 189 a~n-~~g~~~~~~~~l~v 205 (212)
+.+ ..|..... +.|.|
T Consensus 81 v~~~~~g~~~~~-~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKV-TTLTV 97 (98)
T ss_pred EEeCCCCcEEEE-EEEEe
Confidence 875 55666555 55554
No 175
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=98.72 E-value=2.8e-07 Score=57.35 Aligned_cols=45 Identities=27% Similarity=0.508 Sum_probs=34.4
Q ss_pred CCCeEEeCCCccEE-e---eCCeEEEEcccCCCCCCcEEEEeCCEEecC
Q psy2441 28 GFPQITEAPSTKVV-E---ISHTTVLHCSASGNPPPKISWIREMLPVDT 72 (212)
Q Consensus 28 ~~p~~~~~~~~~~v-~---~g~~v~l~C~~~~~p~~~v~W~k~g~~l~~ 72 (212)
.+|.|...+....+ . .|..+.|.|.+.|.|.+.+.|+|+|..+..
T Consensus 3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~ 51 (109)
T cd05773 3 FAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDL 51 (109)
T ss_pred cccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCC
Confidence 46776655543322 2 357899999999999999999999998864
No 176
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.72 E-value=2.4e-07 Score=56.79 Aligned_cols=78 Identities=26% Similarity=0.348 Sum_probs=48.6
Q ss_pred CCcEEEEEeeeeCCC---CceEEEeCCE--Ee---------cC----CCCCceEEcCC---CCceeEEEcCCCCCCCeeE
Q psy2441 127 SHTTVLHCSASGNPP---PKISWIREML--PV---------DT----SRNPRYNLLTS---GAPGALQITNSIEEDQGKY 185 (212)
Q Consensus 127 g~~~~l~C~~~~~p~---~~i~W~~~~~--~~---------~~----~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~y 185 (212)
|+++.|.|....... ..+.|++... .+ .. ....|+.+..+ .+..+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 678899998753221 3677877441 11 00 01134443221 2347899999999999999
Q ss_pred EEEEEcccccceecceEEEE
Q psy2441 186 ECVAENEVGTEYSPSTMLYV 205 (212)
Q Consensus 186 ~C~a~n~~g~~~~~~~~l~v 205 (212)
.|.+.|..+..... +.|.|
T Consensus 81 ~C~v~~~~~~~~~~-i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEAT-VELKV 99 (100)
T ss_pred EEEEecCCcEEEEE-EEEEE
Confidence 99999876664433 44443
No 177
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=98.71 E-value=8.6e-08 Score=55.27 Aligned_cols=58 Identities=28% Similarity=0.371 Sum_probs=38.7
Q ss_pred EEEEcccCCCCCCcEEEEeCCEEecCCCCCeeEEeecCCCCeEEEeeeCCccceeEEee
Q psy2441 47 TVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTYIKIKPNLFSPLSVYSA 105 (212)
Q Consensus 47 v~l~C~~~~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~g~~l~i~~~~~~~~~v~~~ 105 (212)
|.|.|.+.|.|.|.|.|+|+|..+... ..++.+...+++...|.|.++...+...|.+
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~-~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C 58 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYN-TDRISLYQDNSGRVTLLIKNVNKKDAGWYTV 58 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCC-CCeEEEEEcCCCcEEEEECCCChhhCEEEEE
Confidence 579999999999999999999988743 2466665432221245666665555554443
No 178
>KOG3515|consensus
Probab=98.71 E-value=2e-07 Score=74.56 Aligned_cols=151 Identities=21% Similarity=0.269 Sum_probs=83.3
Q ss_pred ccEEeeCCeEEEEcccCCCCC-CcEEEEeCCEEecCCC----CCeeEEee--cCCCCeEEEeeeCCcccee---EEeecC
Q psy2441 38 TKVVEISHTTVLHCSASGNPP-PKISWIREMLPVDTSR----NPRYNLLT--SGAPGTYIKIKPNLFSPLS---VYSADK 107 (212)
Q Consensus 38 ~~~v~~g~~v~l~C~~~~~p~-~~v~W~k~g~~l~~~~----~~~~~~~~--~~~~g~~l~i~~~~~~~~~---v~~~~~ 107 (212)
...+.+|++|.|.|.+.+.|+ +.+.||+.+..+.... ...+.... .+....+.|...+...... +...+.
T Consensus 16 ~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~ 95 (741)
T KOG3515|consen 16 TVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEHGRYATIADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVD 95 (741)
T ss_pred ChhhccCCcceeeeecCCCCCCcceEEEecCcccccccccccCCceeeecchhhhhhhhhhhhcccccCceecceeeccc
Confidence 347889999999999977655 5799999987765110 01111111 1122233444333211111 111111
Q ss_pred CCCCCCccccCCcceeEecCCcEEEEEee--eeCCCCceEEEeCCEEecCCCCCc--eE------EcCCCCceeEEEcCC
Q psy2441 108 IPPGFPQITEAPSTKVVEISHTTVLHCSA--SGNPPPKISWIREMLPVDTSRNPR--YN------LLTSGAPGALQITNS 177 (212)
Q Consensus 108 ~~~~~p~~~~~~~~~~~~~g~~~~l~C~~--~~~p~~~i~W~~~~~~~~~~~~~~--~~------~~~~~~~~~l~i~~~ 177 (212)
.+ |.-...........+..+.+.|.+ .+.|.+.+.|..++.......... +. .... .+.+.+...
T Consensus 96 ~~---pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~--~s~l~~~v~ 170 (741)
T KOG3515|consen 96 YP---PACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTE--PSLLKQTVS 170 (741)
T ss_pred cC---ccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceecc--ccceeeEEE
Confidence 11 111111111234557889999965 456778999999876654431111 10 0011 256777778
Q ss_pred CCCCCeeEEEEEEccc
Q psy2441 178 IEEDQGKYECVAENEV 193 (212)
Q Consensus 178 ~~~d~g~y~C~a~n~~ 193 (212)
...+.|.|+|.|.|..
T Consensus 171 Rka~~g~~tC~A~nr~ 186 (741)
T KOG3515|consen 171 RKADNGNYTCPANNRN 186 (741)
T ss_pred EecCCceeEccccccc
Confidence 8899999999999853
No 179
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.68 E-value=1e-07 Score=55.19 Aligned_cols=30 Identities=33% Similarity=0.704 Sum_probs=27.2
Q ss_pred CCeEEEEcccCCCCCCcEEEEeCCEEecCC
Q psy2441 44 SHTTVLHCSASGNPPPKISWIREMLPVDTS 73 (212)
Q Consensus 44 g~~v~l~C~~~~~p~~~v~W~k~g~~l~~~ 73 (212)
|+.+.|.|.+.|.|.|.|.|+++|..+...
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~ 30 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEEL 30 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCC
Confidence 789999999999999999999999888654
No 180
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=98.67 E-value=1.3e-07 Score=55.15 Aligned_cols=57 Identities=25% Similarity=0.339 Sum_probs=38.4
Q ss_pred CCeEEEEcccCCCCCCcEEEEeCCEEecCCCCCeeEEeecCCCCeEEEeeeCCccceeEE
Q psy2441 44 SHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTYIKIKPNLFSPLSVY 103 (212)
Q Consensus 44 g~~v~l~C~~~~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~g~~l~i~~~~~~~~~v~ 103 (212)
|+.+.|.|.+.|.|.|.+.|++++..+... .++.+... +....|.|.++...+...|
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~--~~~~~~~~-~~~~~L~I~~v~~~D~G~Y 57 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDS--ARVSITSE-GGYGTLTIRDVKESDQGAY 57 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCC--CCEEEEEC-CCEEEEEECCCChHHCEEE
Confidence 789999999999999999999999887654 55555433 2223455544443333333
No 181
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.67 E-value=2e-07 Score=56.46 Aligned_cols=79 Identities=18% Similarity=0.326 Sum_probs=50.0
Q ss_pred CCcceeEecCCcEEEEEeeee-CCCCc--eEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccc
Q psy2441 118 APSTKVVEISHTTVLHCSASG-NPPPK--ISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVG 194 (212)
Q Consensus 118 ~~~~~~~~~g~~~~l~C~~~~-~p~~~--i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g 194 (212)
.+....+.+|+.++|.|.+.+ .|.+. |.||+++..+.................+|.+..-..+|...|.|.|.+..+
T Consensus 7 ~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~ 86 (100)
T cd05755 7 SPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLR 86 (100)
T ss_pred ecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccC
Confidence 333344678999999999966 66666 799999988865311000001111135677664444445599999998876
Q ss_pred cc
Q psy2441 195 TE 196 (212)
Q Consensus 195 ~~ 196 (212)
..
T Consensus 87 ~~ 88 (100)
T cd05755 87 PE 88 (100)
T ss_pred cc
Confidence 54
No 182
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.67 E-value=7.4e-08 Score=55.39 Aligned_cols=30 Identities=23% Similarity=0.573 Sum_probs=27.0
Q ss_pred CCeEEEEcccCCCCCCcEEEEeCCEEecCC
Q psy2441 44 SHTTVLHCSASGNPPPKISWIREMLPVDTS 73 (212)
Q Consensus 44 g~~v~l~C~~~~~p~~~v~W~k~g~~l~~~ 73 (212)
|+.+.|.|.+.|.|.+.++|+|++..+...
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~ 30 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNS 30 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccC
Confidence 788999999999999999999999888654
No 183
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=98.67 E-value=6.8e-08 Score=55.67 Aligned_cols=34 Identities=47% Similarity=0.993 Sum_probs=26.1
Q ss_pred EEEEcccCCCCCCcEEEEeCCEEecCCCCCeeEE
Q psy2441 47 TVLHCSASGNPPPKISWIREMLPVDTSRNPRYNL 80 (212)
Q Consensus 47 v~l~C~~~~~p~~~v~W~k~g~~l~~~~~~~~~~ 80 (212)
++|.|.+.|.|.|.|.|||++.++......++..
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~ 34 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQ 34 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEE
Confidence 4799999999999999999998886432234433
No 184
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.66 E-value=1.5e-07 Score=55.66 Aligned_cols=64 Identities=14% Similarity=0.257 Sum_probs=46.9
Q ss_pred CCCccEEeeCCeEEEEcccCCCCCCcEEEEeCCEEecCCCCCeeEEeecCCCCeEEEeeeCCccceeEEee
Q psy2441 35 APSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTYIKIKPNLFSPLSVYSA 105 (212)
Q Consensus 35 ~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~g~~l~i~~~~~~~~~v~~~ 105 (212)
.|.+..+.+|+++.|.|.+.+ +.+.+.|++||.++.... .++.+.. + .|.|.++...+..+|.+
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~-~r~~~~~---~--~L~I~nv~~~DsG~Y~C 65 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPES-AKYLLYR---D--GLLIFNASEADAGRYQC 65 (87)
T ss_pred CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCC-ceEEEEC---C--cEEEeCCCHHHCEEEEE
Confidence 567888999999999999864 677899999999997641 3443321 1 26777776666666665
No 185
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.66 E-value=5.9e-07 Score=52.24 Aligned_cols=64 Identities=16% Similarity=0.288 Sum_probs=43.5
Q ss_pred EEEEEeeee-CCCCceEEEeCCEEecCCCCCceEEcCCC--CceeEEEcCCCCCCCeeEEEEEEcccc
Q psy2441 130 TVLHCSASG-NPPPKISWIREMLPVDTSRNPRYNLLTSG--APGALQITNSIEEDQGKYECVAENEVG 194 (212)
Q Consensus 130 ~~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~a~n~~g 194 (212)
+.|.|.+.+ .|.+.|.|++++..+..... .......+ ..++|.+..-..+|...|.|.|.|..-
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~-~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l 68 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKST-VEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAV 68 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCccc-ceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCccc
Confidence 679999866 67789999999998875311 01111111 146777765556667799999999753
No 186
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.66 E-value=7.2e-07 Score=56.03 Aligned_cols=77 Identities=17% Similarity=0.151 Sum_probs=49.9
Q ss_pred CcceeEecCCcEEEEEeeeeCC----CCceEEEeC----CEE--ec---CC--------CCCceEEcCC--CCceeEEEc
Q psy2441 119 PSTKVVEISHTTVLHCSASGNP----PPKISWIRE----MLP--VD---TS--------RNPRYNLLTS--GAPGALQIT 175 (212)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~~p----~~~i~W~~~----~~~--~~---~~--------~~~~~~~~~~--~~~~~l~i~ 175 (212)
+....+.+|+.+.|.|.....+ ...|.|++. +.. +. .. ...|+.+..+ ....+|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 3446688899999999986543 236999752 111 10 00 0123322211 124789999
Q ss_pred CCCCCCCeeEEEEEEccccc
Q psy2441 176 NSIEEDQGKYECVAENEVGT 195 (212)
Q Consensus 176 ~~~~~d~g~y~C~a~n~~g~ 195 (212)
+++.+|+|.|.|.+.|..+.
T Consensus 85 ~v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 85 QLQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred eCChhhCEEEEEEEEeCCCC
Confidence 99999999999999987653
No 187
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.64 E-value=3e-07 Score=55.35 Aligned_cols=70 Identities=16% Similarity=0.344 Sum_probs=44.2
Q ss_pred EEeCCCccEEeeCCeEEEEcccCCCCCCcEEEEe-CCEEecCCCCCeeEEeecCCCCeEEEeeeCCccceeEEe
Q psy2441 32 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR-EMLPVDTSRNPRYNLLTSGAPGTYIKIKPNLFSPLSVYS 104 (212)
Q Consensus 32 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~k-~g~~l~~~~~~~~~~~~~~~~g~~l~i~~~~~~~~~v~~ 104 (212)
+.+.|....+.+|+.+.|.|.+.|.|+ .+.|++ ++..+... .++.+....+....|.|.++...+...|.
T Consensus 3 v~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 73 (92)
T cd04977 3 VDIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQ--QQISVVQNDDVRSTLTIYNANIEDAGIYK 73 (92)
T ss_pred EEEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccC--CCEEEEeCCCCEEEEEEecCCcccCEEEE
Confidence 456777889999999999999999875 899998 66666543 33333322122234445444444444443
No 188
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.63 E-value=3.9e-07 Score=57.41 Aligned_cols=74 Identities=20% Similarity=0.349 Sum_probs=52.0
Q ss_pred CCcceeEecCCcEEEEEeeee--CCCCceEEEeCC--EEe------cC---------CCCCceEEcCCC--CceeEEEcC
Q psy2441 118 APSTKVVEISHTTVLHCSASG--NPPPKISWIREM--LPV------DT---------SRNPRYNLLTSG--APGALQITN 176 (212)
Q Consensus 118 ~~~~~~~~~g~~~~l~C~~~~--~p~~~i~W~~~~--~~~------~~---------~~~~~~~~~~~~--~~~~l~i~~ 176 (212)
.+....+.+|+.+.|.|.+.+ .+.+.+.|++.. ... .. ....++....+. ....|.|.+
T Consensus 4 ~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 83 (116)
T cd04982 4 PQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQN 83 (116)
T ss_pred cCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEE
Confidence 344566788999999999877 567789999842 111 00 012455444333 347899999
Q ss_pred CCCCCCeeEEEEEEc
Q psy2441 177 SIEEDQGKYECVAEN 191 (212)
Q Consensus 177 ~~~~d~g~y~C~a~n 191 (212)
++.+|+|.|.|.+..
T Consensus 84 ~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 84 LEKEDSATYYCAYWE 98 (116)
T ss_pred CCHHHCEEEEEEEec
Confidence 999999999999864
No 189
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.63 E-value=1.3e-07 Score=54.96 Aligned_cols=27 Identities=44% Similarity=0.929 Sum_probs=23.8
Q ss_pred EEEEcccCCCCCCcEEEEeCCEEecCC
Q psy2441 47 TVLHCSASGNPPPKISWIREMLPVDTS 73 (212)
Q Consensus 47 v~l~C~~~~~p~~~v~W~k~g~~l~~~ 73 (212)
+.|.|.+.|.|.|.|+|+|+|.++...
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~ 27 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPE 27 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCC
Confidence 478999999999999999999988543
No 190
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.63 E-value=7e-08 Score=54.81 Aligned_cols=27 Identities=37% Similarity=0.815 Sum_probs=23.9
Q ss_pred EEEEcccCCCCCCcEEEEeCCEEecCC
Q psy2441 47 TVLHCSASGNPPPKISWIREMLPVDTS 73 (212)
Q Consensus 47 v~l~C~~~~~p~~~v~W~k~g~~l~~~ 73 (212)
|.|.|.+.|.|.|.+.|+|+|..+...
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~ 27 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTES 27 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCC
Confidence 579999999999999999999888654
No 191
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=98.62 E-value=3.3e-07 Score=54.31 Aligned_cols=35 Identities=26% Similarity=0.641 Sum_probs=31.2
Q ss_pred cEEeeCCeEEEEcccCCCCCCcEEEEeCCEEecCC
Q psy2441 39 KVVEISHTTVLHCSASGNPPPKISWIREMLPVDTS 73 (212)
Q Consensus 39 ~~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~l~~~ 73 (212)
+.+.+|+.+.|.|.+.|.|.|.+.|||+|.++...
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~ 38 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQE 38 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCC
Confidence 45778999999999999999999999999988654
No 192
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.60 E-value=3.4e-07 Score=55.27 Aligned_cols=34 Identities=15% Similarity=0.264 Sum_probs=29.2
Q ss_pred CccEEeeCCeEEEEcccCC-----CCCCcEEEEeCCEEe
Q psy2441 37 STKVVEISHTTVLHCSASG-----NPPPKISWIREMLPV 70 (212)
Q Consensus 37 ~~~~v~~g~~v~l~C~~~~-----~p~~~v~W~k~g~~l 70 (212)
....+.+|+.+.|.|.+.+ .|.+.|.|||++..+
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~ 45 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKT 45 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCC
Confidence 3567789999999999988 688899999998664
No 193
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.60 E-value=1.2e-06 Score=55.14 Aligned_cols=77 Identities=17% Similarity=0.237 Sum_probs=49.6
Q ss_pred CcceeEecCCcEEEEEeeeeCC----CCceEEEeCCE------Eec-C---------C--CCCceEEcCC--CCceeEEE
Q psy2441 119 PSTKVVEISHTTVLHCSASGNP----PPKISWIREML------PVD-T---------S--RNPRYNLLTS--GAPGALQI 174 (212)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~~p----~~~i~W~~~~~------~~~-~---------~--~~~~~~~~~~--~~~~~l~i 174 (212)
|....+.+|+.+.|.|...... ...+.|++... .+. . . ...|+.+..+ ....+|.|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 4445677899999999885432 24699986321 100 0 0 0122222221 12478999
Q ss_pred cCCCCCCCeeEEEEEEccccc
Q psy2441 175 TNSIEEDQGKYECVAENEVGT 195 (212)
Q Consensus 175 ~~~~~~d~g~y~C~a~n~~g~ 195 (212)
.+++.+|+|.|.|.+.|....
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred eeCCcccCEEEEEEEEeCCCC
Confidence 999999999999999987554
No 194
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.58 E-value=1.3e-06 Score=53.48 Aligned_cols=76 Identities=29% Similarity=0.420 Sum_probs=48.1
Q ss_pred cEEEEEeeeeCC---CCceEEEeCCEE-----e---cC--C------CCCceEEcCC--CCceeEEEcCCCCCCCeeEEE
Q psy2441 129 TTVLHCSASGNP---PPKISWIREMLP-----V---DT--S------RNPRYNLLTS--GAPGALQITNSIEEDQGKYEC 187 (212)
Q Consensus 129 ~~~l~C~~~~~p---~~~i~W~~~~~~-----~---~~--~------~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C 187 (212)
++.|.|...... ...+.|++.... + .. . ...|..+..+ ....+|.|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 578999886544 347889883211 1 00 0 1134444322 235789999999999999999
Q ss_pred EEEc-ccccceecceEEEE
Q psy2441 188 VAEN-EVGTEYSPSTMLYV 205 (212)
Q Consensus 188 ~a~n-~~g~~~~~~~~l~v 205 (212)
.+.+ ..|..+.. +.|.|
T Consensus 82 ~v~~~p~g~~~~~-~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAE-LVLTV 99 (100)
T ss_pred EEEeCCCCCeeeE-EEEEe
Confidence 9988 56665444 55554
No 195
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=98.58 E-value=4.8e-07 Score=52.10 Aligned_cols=55 Identities=29% Similarity=0.444 Sum_probs=37.1
Q ss_pred eEEEEcccCCCCCCcEEEEeCCEEecCCCCCeeEEeecCCCCeEEEeeeCCccceeEE
Q psy2441 46 TTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTYIKIKPNLFSPLSVY 103 (212)
Q Consensus 46 ~v~l~C~~~~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~g~~l~i~~~~~~~~~v~ 103 (212)
.+.|.|.+.|.|.|.+.|+|+|..+... .++.+... +....|.|.++...+...|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~--~~~~~~~~-~~~~~L~I~~~~~~D~G~Y 55 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLS--GRVQIETT-ASSTSLVIKNAERSDSGKY 55 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCC--CeEEEEEC-CCeEEEEECCCCcCcCEEE
Confidence 4789999999999999999999998654 55555443 3334455555444333333
No 196
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.58 E-value=1.2e-06 Score=54.31 Aligned_cols=79 Identities=22% Similarity=0.298 Sum_probs=51.1
Q ss_pred CCcEEEEEeeeeCC-------CCceEEEeCC-----EEe------------cCCCCCceEEcCC---CCceeEEEcCCCC
Q psy2441 127 SHTTVLHCSASGNP-------PPKISWIREM-----LPV------------DTSRNPRYNLLTS---GAPGALQITNSIE 179 (212)
Q Consensus 127 g~~~~l~C~~~~~p-------~~~i~W~~~~-----~~~------------~~~~~~~~~~~~~---~~~~~l~i~~~~~ 179 (212)
|+++.|.|...-.| .+.|.|.+.. ... ......|+.+..+ .+..+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 78899999965332 3689998741 110 0112345555432 1357999999999
Q ss_pred CCCeeEEEEEEcccccceecceEEEEe
Q psy2441 180 EDQGKYECVAENEVGTEYSPSTMLYVK 206 (212)
Q Consensus 180 ~d~g~y~C~a~n~~g~~~~~~~~l~v~ 206 (212)
+|+|.|.|.+.......... +.|.|.
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~-v~L~V~ 107 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDT-VPLEVT 107 (110)
T ss_pred HHCEEEEEEEEECCcccEEE-EEEEEE
Confidence 99999999998855444433 555554
No 197
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.57 E-value=1.4e-06 Score=54.82 Aligned_cols=74 Identities=20% Similarity=0.328 Sum_probs=51.1
Q ss_pred CCcceeEecCCcEEEEEeeeeC-CCCceEEEeCC--EEec----------CCCCCceEEcC--CCCceeEEEcCCCCCCC
Q psy2441 118 APSTKVVEISHTTVLHCSASGN-PPPKISWIREM--LPVD----------TSRNPRYNLLT--SGAPGALQITNSIEEDQ 182 (212)
Q Consensus 118 ~~~~~~~~~g~~~~l~C~~~~~-p~~~i~W~~~~--~~~~----------~~~~~~~~~~~--~~~~~~l~i~~~~~~d~ 182 (212)
.+....+.+|+++.|.|..... ....+.|++.. .... .....|+.... .....+|.|.++..+|+
T Consensus 5 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Ds 84 (116)
T cd07706 5 AQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDS 84 (116)
T ss_pred eCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHC
Confidence 3445668889999999998654 45679999832 1100 01134555432 22347899999999999
Q ss_pred eeEEEEEEc
Q psy2441 183 GKYECVAEN 191 (212)
Q Consensus 183 g~y~C~a~n 191 (212)
|.|.|.+..
T Consensus 85 g~Y~C~~~~ 93 (116)
T cd07706 85 AKYFCALST 93 (116)
T ss_pred EEEEEEEEC
Confidence 999999985
No 198
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.57 E-value=2.2e-07 Score=53.98 Aligned_cols=27 Identities=30% Similarity=0.807 Sum_probs=24.1
Q ss_pred EEEEcccCCCCCCcEEEEeCCEEecCC
Q psy2441 47 TVLHCSASGNPPPKISWIREMLPVDTS 73 (212)
Q Consensus 47 v~l~C~~~~~p~~~v~W~k~g~~l~~~ 73 (212)
++|.|.+.|.|.|.+.|+|+|.++...
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~ 27 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDG 27 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCC
Confidence 579999999999999999999988654
No 199
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=98.56 E-value=3.2e-07 Score=52.88 Aligned_cols=55 Identities=24% Similarity=0.386 Sum_probs=35.3
Q ss_pred EEEEcccCCCCCCcEEEEeCCEEecCCCCCeeEEeecCCCCe-EEEeeeCCccceeEE
Q psy2441 47 TVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGT-YIKIKPNLFSPLSVY 103 (212)
Q Consensus 47 v~l~C~~~~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~g~-~l~i~~~~~~~~~v~ 103 (212)
|.|.|.+.|.|.|.|.|+|++.++... ..++.+... +.+. .|.|.++...+...|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~-~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y 56 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHN-TDRVSMHQD-NCGYICLLIQGATKEDAGWY 56 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCC-CCeEEEEEc-CCCEEEEEECCCCHHHCEEE
Confidence 579999999999999999999988643 245555433 1121 344544444444443
No 200
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.56 E-value=2.7e-07 Score=53.58 Aligned_cols=25 Identities=32% Similarity=0.761 Sum_probs=22.5
Q ss_pred EEEEcccCCCCCCcEEEEeCCEEec
Q psy2441 47 TVLHCSASGNPPPKISWIREMLPVD 71 (212)
Q Consensus 47 v~l~C~~~~~p~~~v~W~k~g~~l~ 71 (212)
+.|.|.+.|+|.|.|+|+|+|.++.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~ 25 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFN 25 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEcc
Confidence 4789999999999999999998764
No 201
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.55 E-value=1.5e-06 Score=51.12 Aligned_cols=65 Identities=18% Similarity=0.335 Sum_probs=43.1
Q ss_pred EEEEEeeee-CCCCceEEEeCCEEecCCCCCceEEcCCCC----ceeEEEcCCCCCCCeeEEEEEEcccccc
Q psy2441 130 TVLHCSASG-NPPPKISWIREMLPVDTSRNPRYNLLTSGA----PGALQITNSIEEDQGKYECVAENEVGTE 196 (212)
Q Consensus 130 ~~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~a~n~~g~~ 196 (212)
+.|.|.+.+ +|.+.|.|++++..+... .......+++ .+.|.+.....++.+.|.|.|.|.....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~--~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGV--KLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCc--eeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 579999966 588899999999888643 1111111211 2445555555566779999999976543
No 202
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.55 E-value=1.3e-07 Score=53.64 Aligned_cols=49 Identities=16% Similarity=0.384 Sum_probs=33.7
Q ss_pred EEEEcccCCCCCCcEEEEeCCEEecCCC----CCeeEEeec--CCCCeEEEeeeC
Q psy2441 47 TVLHCSASGNPPPKISWIREMLPVDTSR----NPRYNLLTS--GAPGTYIKIKPN 95 (212)
Q Consensus 47 v~l~C~~~~~p~~~v~W~k~g~~l~~~~----~~~~~~~~~--~~~g~~l~i~~~ 95 (212)
+.|.|.+.|.|.|.+.|||+|.+|.... ...+.+... +|.|.|.|...+
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N 55 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLTN 55 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEccCCEEEECcCCHHHCEEEEEEEEE
Confidence 4689999999999999999999986531 112222222 266667766655
No 203
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.55 E-value=1.9e-07 Score=53.23 Aligned_cols=27 Identities=22% Similarity=0.528 Sum_probs=23.9
Q ss_pred EEEEcccCCCCCCcEEEEeCCEEecCC
Q psy2441 47 TVLHCSASGNPPPKISWIREMLPVDTS 73 (212)
Q Consensus 47 v~l~C~~~~~p~~~v~W~k~g~~l~~~ 73 (212)
+.|.|.+.|.|.|++.|+|+|.++...
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~ 27 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEK 27 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCC
Confidence 468999999999999999999988653
No 204
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.55 E-value=3e-07 Score=53.34 Aligned_cols=26 Identities=42% Similarity=0.923 Sum_probs=23.2
Q ss_pred EEEEcccCCCCCCcEEEEeCCEEecC
Q psy2441 47 TVLHCSASGNPPPKISWIREMLPVDT 72 (212)
Q Consensus 47 v~l~C~~~~~p~~~v~W~k~g~~l~~ 72 (212)
+.|.|.+.|.|.|+|+|+|+|.++..
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~ 26 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDI 26 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCC
Confidence 47999999999999999999998743
No 205
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=98.55 E-value=4.8e-07 Score=52.21 Aligned_cols=57 Identities=21% Similarity=0.345 Sum_probs=36.4
Q ss_pred EEEEcccCCCCCCcEEEEeCCEEecCCCCCeeEEeecCCCCeEEEeeeCCccceeEEe
Q psy2441 47 TVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTYIKIKPNLFSPLSVYS 104 (212)
Q Consensus 47 v~l~C~~~~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~g~~l~i~~~~~~~~~v~~ 104 (212)
+.|.|.+.|.|.|.+.|+|++..+... ..++.+...+.+...|.|.++...+...|.
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~-~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~ 57 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYN-TDRISLYQDNCGRICLLIQNANKEDAGWYT 57 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCC-CCcEEEEEcCCCeEEEEECCCCcccCEEEE
Confidence 479999999999999999999988643 245554433122223555555444444443
No 206
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.55 E-value=2.5e-06 Score=51.84 Aligned_cols=76 Identities=28% Similarity=0.410 Sum_probs=48.5
Q ss_pred cEEEEEeeeeC-CCC---ceEEEeCCE----Ee--cC---------CCCCceEEcC-CCCceeEEEcCCCCCCCeeEEEE
Q psy2441 129 TTVLHCSASGN-PPP---KISWIREML----PV--DT---------SRNPRYNLLT-SGAPGALQITNSIEEDQGKYECV 188 (212)
Q Consensus 129 ~~~l~C~~~~~-p~~---~i~W~~~~~----~~--~~---------~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~ 188 (212)
++.|.|..... |.. .+.|.+... .+ .. ....|+.+.. .....+|.|.+++.+|+|.|.|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 57889988642 221 588987321 11 00 0123444332 11258999999999999999999
Q ss_pred EEc-ccccceecceEEEE
Q psy2441 189 AEN-EVGTEYSPSTMLYV 205 (212)
Q Consensus 189 a~n-~~g~~~~~~~~l~v 205 (212)
+.+ ..|..+.. +.|.|
T Consensus 82 v~t~P~g~~~~~-~~L~V 98 (99)
T cd05886 82 FATFPTGNRESQ-LNLTV 98 (99)
T ss_pred EEeCCCCCeEEE-EEEEE
Confidence 999 67776655 66665
No 207
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=98.54 E-value=1.9e-07 Score=53.30 Aligned_cols=27 Identities=22% Similarity=0.511 Sum_probs=24.1
Q ss_pred EEEEcccCCCCCCcEEEEeCCEEecCC
Q psy2441 47 TVLHCSASGNPPPKISWIREMLPVDTS 73 (212)
Q Consensus 47 v~l~C~~~~~p~~~v~W~k~g~~l~~~ 73 (212)
+.|.|.+.|.|.|.+.|+|+|.++...
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~ 27 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEK 27 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCC
Confidence 468999999999999999999998754
No 208
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.54 E-value=5.1e-07 Score=56.50 Aligned_cols=74 Identities=24% Similarity=0.378 Sum_probs=51.2
Q ss_pred CcceeEecCCcEEEEEeee-eCCCCceEEEeCCE-----Eec----C--------CCCCceEEcCC--CCceeEEEcCCC
Q psy2441 119 PSTKVVEISHTTVLHCSAS-GNPPPKISWIREML-----PVD----T--------SRNPRYNLLTS--GAPGALQITNSI 178 (212)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~-~~p~~~i~W~~~~~-----~~~----~--------~~~~~~~~~~~--~~~~~l~i~~~~ 178 (212)
+....+.+|+++.|.|... ......+.|++... .+. . ....++.+..+ ....+|.|.+++
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~ 87 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ 87 (114)
T ss_dssp ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES
T ss_pred CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC
Confidence 4556788999999999998 44556899998321 111 0 01223333222 224689999999
Q ss_pred CCCCeeEEEEEEcc
Q psy2441 179 EEDQGKYECVAENE 192 (212)
Q Consensus 179 ~~d~g~y~C~a~n~ 192 (212)
.+|+|.|.|.+...
T Consensus 88 ~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 88 PSDSGTYFCQVSTS 101 (114)
T ss_dssp GGGEEEEEEEEEES
T ss_pred cCcCEEEEEEEEEC
Confidence 99999999999876
No 209
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=98.53 E-value=4.5e-07 Score=53.28 Aligned_cols=56 Identities=27% Similarity=0.502 Sum_probs=38.7
Q ss_pred EEeeCCeEEEEcccCCCCCCcEEEEeCCEEecCCCC-------CeeEEeec--CCCCeEEEeeeC
Q psy2441 40 VVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRN-------PRYNLLTS--GAPGTYIKIKPN 95 (212)
Q Consensus 40 ~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~l~~~~~-------~~~~~~~~--~~~g~~l~i~~~ 95 (212)
.+..|+++.|.|.+.+.|.|.+.|+|++..+..... ..+.+... +|.|.|.|...+
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N 69 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSN 69 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEc
Confidence 456799999999999999999999999987754310 11222222 366677776655
No 210
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.53 E-value=5.5e-07 Score=54.57 Aligned_cols=71 Identities=20% Similarity=0.367 Sum_probs=48.2
Q ss_pred ecCCcEEEEEeeeeC-CC-CceEEEeCCEEecCCCC-CceEEcCCCC---ceeEEEcCCCCCCCeeEEEEEEccccc
Q psy2441 125 EISHTTVLHCSASGN-PP-PKISWIREMLPVDTSRN-PRYNLLTSGA---PGALQITNSIEEDQGKYECVAENEVGT 195 (212)
Q Consensus 125 ~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~-~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~a~n~~g~ 195 (212)
..|+.+.|.|.+.+. |. +.|.|++++..+..... .......++. .+.|.+......+.+.|.|.|.+....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 358899999999997 53 58999999988865411 1111122211 245666666667899999999986543
No 211
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.52 E-value=9.6e-07 Score=53.33 Aligned_cols=66 Identities=14% Similarity=0.175 Sum_probs=45.4
Q ss_pred eeEecCCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEE
Q psy2441 122 KVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAE 190 (212)
Q Consensus 122 ~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~ 190 (212)
..+.+|+.++|.|.... ....+.|+|++......... ..........+.|.+++.+|+|.|.|...
T Consensus 10 ~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~--~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 10 PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLY--EKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecc--cccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 34667999999998865 44579999988654321000 00111123678999999999999999974
No 212
>KOG3515|consensus
Probab=98.51 E-value=8.7e-07 Score=71.07 Aligned_cols=186 Identities=19% Similarity=0.156 Sum_probs=106.9
Q ss_pred eeeEEEeeccCCCcceecccccCCCCCeEEeCCCccEEeeCCeEEEEccc--CCCCCCcEEEEeCCEEecCCCCC-----
Q psy2441 4 GTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSA--SGNPPPKISWIREMLPVDTSRNP----- 76 (212)
Q Consensus 4 g~Y~C~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~--~~~p~~~v~W~k~g~~l~~~~~~----- 76 (212)
++|.|++.|..+........+.+..+|.-...........+..+.+.|.+ .+.|.+.+.|+.++.........
T Consensus 72 ~~~~c~a~ns~~~~~~~~~~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~ 151 (741)
T KOG3515|consen 72 AELNCRAFNSVGMPSRCPMILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVG 151 (741)
T ss_pred hhhhhhhcccccCceecceeeccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCccccc
Confidence 57999999997777767666666677765545555566778899999965 45678899999987554332111
Q ss_pred --------------eeEEeecCCCCeEEEeeeCC---ccceeEEe--ecCCCCCCCccccCCcceeEecCCcEEEEEee-
Q psy2441 77 --------------RYNLLTSGAPGTYIKIKPNL---FSPLSVYS--ADKIPPGFPQITEAPSTKVVEISHTTVLHCSA- 136 (212)
Q Consensus 77 --------------~~~~~~~~~~g~~l~i~~~~---~~~~~v~~--~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~- 136 (212)
.+......++|.+.|..... .....+.. .+..+.....+..........+|..+.|.|.+
T Consensus 152 ~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~ 231 (741)
T KOG3515|consen 152 AGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQ 231 (741)
T ss_pred ccccCceeccccceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhh
Confidence 11222223566666655551 11111111 11111111122222222557789999999976
Q ss_pred eeCCCCceEEEeCCEEecCCCCCceEEcCCCC--ceeEEEcCCCCCCCeeEEEEEEc
Q psy2441 137 SGNPPPKISWIREMLPVDTSRNPRYNLLTSGA--PGALQITNSIEEDQGKYECVAEN 191 (212)
Q Consensus 137 ~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~a~n 191 (212)
.++|.+.+.|+++...+... .......++. ...+.+..-...+.-...|.+.|
T Consensus 232 gg~P~~~~~w~~~s~~~~~~--sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n 286 (741)
T KOG3515|consen 232 GGNPSQQQTWYKDSRPQSES--SLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN 286 (741)
T ss_pred cCCcchhhhhccccccchhh--hcccCCCCCCcccccccccccccchhhhhhccccC
Confidence 56889999999987766542 0000011110 13344443344445577799988
No 213
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.50 E-value=3.2e-06 Score=49.75 Aligned_cols=66 Identities=18% Similarity=0.372 Sum_probs=43.6
Q ss_pred EEEEEeeee-CCCCceEEEeCCEEecCCCCCceEEcCCCC----ceeEEEcCCCCCCCeeEEEEEEcccccc
Q psy2441 130 TVLHCSASG-NPPPKISWIREMLPVDTSRNPRYNLLTSGA----PGALQITNSIEEDQGKYECVAENEVGTE 196 (212)
Q Consensus 130 ~~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~a~n~~g~~ 196 (212)
+.|+|.+.+ +|.+.|.|++++..+... ........+++ .+.|.+.....++...|.|.+.+.....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~-~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGA-PTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD 72 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCc-ceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence 579999977 588899999999887653 11111222211 2445555555667789999999876433
No 214
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.50 E-value=9.4e-07 Score=52.97 Aligned_cols=26 Identities=38% Similarity=0.786 Sum_probs=23.8
Q ss_pred CCeEEEEcccCCCCCCcEEEEeCCEE
Q psy2441 44 SHTTVLHCSASGNPPPKISWIREMLP 69 (212)
Q Consensus 44 g~~v~l~C~~~~~p~~~v~W~k~g~~ 69 (212)
|+.+.|.|.+.+.|.|.+.|+|+|..
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~ 26 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQ 26 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCc
Confidence 78999999999999999999998864
No 215
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=98.49 E-value=8.4e-07 Score=53.17 Aligned_cols=24 Identities=21% Similarity=0.735 Sum_probs=22.1
Q ss_pred CCeEEEEcccCCCCCCcEEEEeCC
Q psy2441 44 SHTTVLHCSASGNPPPKISWIREM 67 (212)
Q Consensus 44 g~~v~l~C~~~~~p~~~v~W~k~g 67 (212)
|+.+.|.|.+.|.|.|.|+|+|++
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~ 24 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHV 24 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEec
Confidence 688999999999999999999963
No 216
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.48 E-value=2.4e-06 Score=51.96 Aligned_cols=78 Identities=18% Similarity=0.273 Sum_probs=49.5
Q ss_pred CCcEEEEEeeeeCCC-CceEEEeCCEE----ec---C-C-------CCCceEEc-CCCCceeEEEcCCCCCCCeeEEEEE
Q psy2441 127 SHTTVLHCSASGNPP-PKISWIREMLP----VD---T-S-------RNPRYNLL-TSGAPGALQITNSIEEDQGKYECVA 189 (212)
Q Consensus 127 g~~~~l~C~~~~~p~-~~i~W~~~~~~----~~---~-~-------~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~a 189 (212)
|++++|.|....... -.+.|++.... +. . . ...++... .+....+|.|.+++.+|+|.|.|..
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 788999998654433 26999984311 00 0 0 11222222 1223578999999999999999998
Q ss_pred Ec-ccccceecceEEEE
Q psy2441 190 EN-EVGTEYSPSTMLYV 205 (212)
Q Consensus 190 ~n-~~g~~~~~~~~l~v 205 (212)
.+ ..|..... +.|.|
T Consensus 81 ~~~p~g~~~~~-~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGT-MCLTV 96 (97)
T ss_pred EeCCCCCeeeE-EEEEE
Confidence 75 45665555 66665
No 217
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.47 E-value=8.5e-07 Score=51.06 Aligned_cols=29 Identities=31% Similarity=0.738 Sum_probs=24.8
Q ss_pred CCeEEEEcccCCCCCCcEEEEe-CCEEecC
Q psy2441 44 SHTTVLHCSASGNPPPKISWIR-EMLPVDT 72 (212)
Q Consensus 44 g~~v~l~C~~~~~p~~~v~W~k-~g~~l~~ 72 (212)
|+.+.|.|.+.|.|.|.+.|++ ++..+..
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~ 30 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISN 30 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecC
Confidence 7899999999999999999997 5666544
No 218
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=98.47 E-value=7.6e-07 Score=52.15 Aligned_cols=26 Identities=23% Similarity=0.594 Sum_probs=23.3
Q ss_pred EEEcccCCCCCCcEEEEeCCEEecCC
Q psy2441 48 VLHCSASGNPPPKISWIREMLPVDTS 73 (212)
Q Consensus 48 ~l~C~~~~~p~~~v~W~k~g~~l~~~ 73 (212)
.|.|.+.|+|.|.|+|||+|.+|...
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~ 27 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNES 27 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCC
Confidence 47899999999999999999998765
No 219
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=98.47 E-value=3.8e-07 Score=52.91 Aligned_cols=26 Identities=27% Similarity=0.627 Sum_probs=23.2
Q ss_pred EEEcccCCCCCCcEEEEeCCEEecCC
Q psy2441 48 VLHCSASGNPPPKISWIREMLPVDTS 73 (212)
Q Consensus 48 ~l~C~~~~~p~~~v~W~k~g~~l~~~ 73 (212)
.|.|.+.|+|.|+|+|||||.+|...
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~l~~~ 27 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAILNES 27 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEECCCC
Confidence 37899999999999999999999764
No 220
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.46 E-value=5.3e-07 Score=52.07 Aligned_cols=23 Identities=35% Similarity=0.856 Sum_probs=20.5
Q ss_pred EEEEcccCCCCCCcEEEEeCCEE
Q psy2441 47 TVLHCSASGNPPPKISWIREMLP 69 (212)
Q Consensus 47 v~l~C~~~~~p~~~v~W~k~g~~ 69 (212)
+.|.|.+.|.|.|.++|+|+|..
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~ 23 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGT 23 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCc
Confidence 47899999999999999999864
No 221
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.46 E-value=6.4e-06 Score=51.33 Aligned_cols=80 Identities=24% Similarity=0.323 Sum_probs=52.8
Q ss_pred CCcEEEEEeeeeCC-----------CCceEEEeC-----CE-----Ee----------cCCCCCceEEcCC---CCceeE
Q psy2441 127 SHTTVLHCSASGNP-----------PPKISWIRE-----ML-----PV----------DTSRNPRYNLLTS---GAPGAL 172 (212)
Q Consensus 127 g~~~~l~C~~~~~p-----------~~~i~W~~~-----~~-----~~----------~~~~~~~~~~~~~---~~~~~l 172 (212)
|.++.|.|...-.| ...|.|++- +. .+ ......|..+..+ .+..+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 67889999986433 238999873 11 11 0112345544322 135899
Q ss_pred EEcCCCCCCCeeEEEEEEcccccceecceEEEEec
Q psy2441 173 QITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207 (212)
Q Consensus 173 ~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v~~ 207 (212)
.|.+++.+|+|.|.|.+.+........ +.|.|++
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~-v~L~V~G 115 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIEDTQDT-VSLDVSG 115 (117)
T ss_pred EEcccccccCEEEEEEEEECCcccEEE-EEEEEEE
Confidence 999999999999999998876666555 6666653
No 222
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.46 E-value=2.1e-06 Score=53.25 Aligned_cols=69 Identities=23% Similarity=0.481 Sum_probs=46.0
Q ss_pred eEecCCcEEEEEeeeeCC-CCceEEEeCCEE---e--c-----CC----------CCCceEE--cCCCCceeEEEcCCCC
Q psy2441 123 VVEISHTTVLHCSASGNP-PPKISWIREMLP---V--D-----TS----------RNPRYNL--LTSGAPGALQITNSIE 179 (212)
Q Consensus 123 ~~~~g~~~~l~C~~~~~p-~~~i~W~~~~~~---~--~-----~~----------~~~~~~~--~~~~~~~~l~i~~~~~ 179 (212)
.+.+|+.+.|.|.+.... ...+.|++.... . . .. ...++.. ..+.....|.|.++..
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 467899999999987643 457999984321 0 0 00 0134432 2222346799999999
Q ss_pred CCCeeEEEEEEc
Q psy2441 180 EDQGKYECVAEN 191 (212)
Q Consensus 180 ~d~g~y~C~a~n 191 (212)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999999853
No 223
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.45 E-value=9e-07 Score=52.95 Aligned_cols=37 Identities=16% Similarity=0.324 Sum_probs=30.9
Q ss_pred CCCccEEeeCCeEEEEcccCCCCCCcEEEEeCCEEecC
Q psy2441 35 APSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDT 72 (212)
Q Consensus 35 ~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~l~~ 72 (212)
.+..+.+.+|+++.|.|.+.+ |.+.+.|||++..+..
T Consensus 2 ~~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~ 38 (89)
T cd04979 2 EEKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQR 38 (89)
T ss_pred cceEEEEECCCcEEEEEeCCC-CCceEEEEECCccccc
Confidence 345677899999999999977 7789999999877654
No 224
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.45 E-value=1.5e-06 Score=52.66 Aligned_cols=70 Identities=19% Similarity=0.208 Sum_probs=45.1
Q ss_pred CCccEEeeCCeEEEEcccCCCCCCcEEEEeCCEEec---C---CCCCeeEEeecCCCCeEEEeeeCCccceeEEee
Q psy2441 36 PSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVD---T---SRNPRYNLLTSGAPGTYIKIKPNLFSPLSVYSA 105 (212)
Q Consensus 36 ~~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~l~---~---~~~~~~~~~~~~~~g~~l~i~~~~~~~~~v~~~ 105 (212)
+.++.+.+|+++.|.|.+.+.|.+.+.||+.+..+. . ....|+.+.........|.|.++...+..+|.+
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C 79 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTC 79 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEE
Confidence 457889999999999999999999999997432110 0 012555553322233456666666666666655
No 225
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.45 E-value=2.7e-06 Score=51.89 Aligned_cols=71 Identities=15% Similarity=0.202 Sum_probs=48.8
Q ss_pred eEecCCcEEEEEeeee-CCCCceEEEeCCEEe-----------cCCCCCceEEcC--CCCceeEEEcCCCCCCCeeEEEE
Q psy2441 123 VVEISHTTVLHCSASG-NPPPKISWIREMLPV-----------DTSRNPRYNLLT--SGAPGALQITNSIEEDQGKYECV 188 (212)
Q Consensus 123 ~~~~g~~~~l~C~~~~-~p~~~i~W~~~~~~~-----------~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~ 188 (212)
.+.+|+++.|.|.... .....+.|++..... ......++.+.. ..+...|.|.+++.+|+|.|.|.
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 82 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG 82 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence 4678999999998765 345678999854211 001124454432 23356899999999999999998
Q ss_pred EEccc
Q psy2441 189 AENEV 193 (212)
Q Consensus 189 a~n~~ 193 (212)
+....
T Consensus 83 ~~~~~ 87 (98)
T cd05716 83 VGDDG 87 (98)
T ss_pred cccCC
Confidence 87653
No 226
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.43 E-value=2.9e-06 Score=49.90 Aligned_cols=65 Identities=17% Similarity=0.288 Sum_probs=42.5
Q ss_pred EEEEEeeee-CCCCceEEEeCCEEecCCCCCceEEcCCCC----ceeEEEcCCCCCCCeeEEEEEEccccc
Q psy2441 130 TVLHCSASG-NPPPKISWIREMLPVDTSRNPRYNLLTSGA----PGALQITNSIEEDQGKYECVAENEVGT 195 (212)
Q Consensus 130 ~~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~a~n~~g~ 195 (212)
+.|.|.+.+ +|...|.|++++..+.... .......+++ .+.|.+..-...+...|.|.+.+..-.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~-~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVK-YLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCce-eeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 579999977 6778999999999875431 1111111111 245666655566677999999987544
No 227
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.43 E-value=4.8e-07 Score=51.64 Aligned_cols=49 Identities=33% Similarity=0.558 Sum_probs=32.5
Q ss_pred EEEEcccCCCCCCcEEEEeCCEEecCCC------CCeeEEeec--CCCCeEEEeeeC
Q psy2441 47 TVLHCSASGNPPPKISWIREMLPVDTSR------NPRYNLLTS--GAPGTYIKIKPN 95 (212)
Q Consensus 47 v~l~C~~~~~p~~~v~W~k~g~~l~~~~------~~~~~~~~~--~~~g~~l~i~~~ 95 (212)
+.|.|.+.|.|.|.+.|+|++.++.... ...+.+... +|.|.|.|++.+
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 57 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAEN 57 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEc
Confidence 4689999999999999999987765421 112222222 266666666665
No 228
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.42 E-value=5.9e-07 Score=50.94 Aligned_cols=26 Identities=23% Similarity=0.618 Sum_probs=22.5
Q ss_pred EEEEcccCCCCCCcEEEEeCCEEecC
Q psy2441 47 TVLHCSASGNPPPKISWIREMLPVDT 72 (212)
Q Consensus 47 v~l~C~~~~~p~~~v~W~k~g~~l~~ 72 (212)
+.|.|.+.|.|.|.+.|+|++..+..
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~ 26 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPK 26 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCC
Confidence 47999999999999999999876644
No 229
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.41 E-value=6.5e-06 Score=49.65 Aligned_cols=77 Identities=22% Similarity=0.290 Sum_probs=49.5
Q ss_pred CcEEEEEeeeeCCC-CceEEEeCC----EEec-----------CCCCCceEEc-CCCCceeEEEcCCCCCCCeeEEEEEE
Q psy2441 128 HTTVLHCSASGNPP-PKISWIREM----LPVD-----------TSRNPRYNLL-TSGAPGALQITNSIEEDQGKYECVAE 190 (212)
Q Consensus 128 ~~~~l~C~~~~~p~-~~i~W~~~~----~~~~-----------~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~a~ 190 (212)
+++.|.|.....+. ..+.|.+.. ..+. .....|+.+. .+....+|.|.+++.+|+|.|.|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 36789998864332 488898732 1111 0112344442 22235899999999999999999986
Q ss_pred c-ccccceecceEEEE
Q psy2441 191 N-EVGTEYSPSTMLYV 205 (212)
Q Consensus 191 n-~~g~~~~~~~~l~v 205 (212)
+ ..|+.... ..|.|
T Consensus 81 tfP~G~~~~~-~~l~~ 95 (96)
T cd05887 81 TFPLGNTQSS-TTVTV 95 (96)
T ss_pred eCCCCCeeEE-EEEEE
Confidence 5 66777665 66655
No 230
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.41 E-value=2.2e-06 Score=50.47 Aligned_cols=60 Identities=20% Similarity=0.258 Sum_probs=42.5
Q ss_pred CCccEEeeCCeEEEEcccC-CCCCCcEEEEeCCEEecCCC-CCeeEEeec--CCCCeEEEeeeC
Q psy2441 36 PSTKVVEISHTTVLHCSAS-GNPPPKISWIREMLPVDTSR-NPRYNLLTS--GAPGTYIKIKPN 95 (212)
Q Consensus 36 ~~~~~v~~g~~v~l~C~~~-~~p~~~v~W~k~g~~l~~~~-~~~~~~~~~--~~~g~~l~i~~~ 95 (212)
+....+.+|+.++|.|.+. +.+...+.|||+|..+.... ...+.+... .|.|.|.|....
T Consensus 6 ~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~~~~~l~I~~~~~~dsG~Y~C~~~~ 69 (83)
T cd05753 6 VPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSHSNSNLSIPQATLSDSGSYHCSGII 69 (83)
T ss_pred CCcceecCCCCEEEEeeCCCCCcceEEEEEECCeEccccCCCceEEECccCHHHCEEEEEEEEe
Confidence 3355789999999999985 45667899999998775421 233444333 478888887665
No 231
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.39 E-value=3.3e-06 Score=51.14 Aligned_cols=54 Identities=19% Similarity=0.428 Sum_probs=41.5
Q ss_pred CCeEEeCCCccEEeeCCeEEEEcccCCCCCC-cEEEEeCCEEecCCCCCeeEEeec
Q psy2441 29 FPQITEAPSTKVVEISHTTVLHCSASGNPPP-KISWIREMLPVDTSRNPRYNLLTS 83 (212)
Q Consensus 29 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~-~v~W~k~g~~l~~~~~~~~~~~~~ 83 (212)
||.+ .....+.+.+|+.+.|.|.+.+.|.| .|.|.+++..|......|+.+...
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~ 56 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERT 56 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEE
Confidence 5555 55567888999999999999888877 489999988776654467776654
No 232
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.36 E-value=2.4e-06 Score=49.50 Aligned_cols=27 Identities=19% Similarity=0.518 Sum_probs=23.3
Q ss_pred eEEEEccc-CCCCCCcEEEEeCCEEecC
Q psy2441 46 TTVLHCSA-SGNPPPKISWIREMLPVDT 72 (212)
Q Consensus 46 ~v~l~C~~-~~~p~~~v~W~k~g~~l~~ 72 (212)
.+.|.|.. .++|+++|+||||+++|..
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~ 28 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELKG 28 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECCC
Confidence 37899998 5679999999999999965
No 233
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.35 E-value=2.9e-06 Score=50.24 Aligned_cols=62 Identities=21% Similarity=0.339 Sum_probs=40.9
Q ss_pred eCCCccEEeeCCeEEEEcccCC-CCCCcEEEEeCCEEecCCC---CCeeEEeec--CCCCeEEEeeeC
Q psy2441 34 EAPSTKVVEISHTTVLHCSASG-NPPPKISWIREMLPVDTSR---NPRYNLLTS--GAPGTYIKIKPN 95 (212)
Q Consensus 34 ~~~~~~~v~~g~~v~l~C~~~~-~p~~~v~W~k~g~~l~~~~---~~~~~~~~~--~~~g~~l~i~~~ 95 (212)
..|....+.+|+.++|.|.+.+ .|.+.+.|++++..+.... ...+.+... +|.|.|.|...+
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n 73 (85)
T cd05754 6 EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAMDFNGILTIRNVQLSDAGTYVCTGSN 73 (85)
T ss_pred cCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcccccCCEEEECCCCHHHCEEEEEEEec
Confidence 4566778999999999999964 6788999999986653221 123333322 255666665544
No 234
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.35 E-value=9.7e-06 Score=54.06 Aligned_cols=86 Identities=16% Similarity=0.209 Sum_probs=58.6
Q ss_pred eeEecCCcEEEEEeee-eCCCCceEEEeCCEEec----------CCCCCceEE-cCCCCceeEEEcCCCCCCCeeEEEEE
Q psy2441 122 KVVEISHTTVLHCSAS-GNPPPKISWIREMLPVD----------TSRNPRYNL-LTSGAPGALQITNSIEEDQGKYECVA 189 (212)
Q Consensus 122 ~~~~~g~~~~l~C~~~-~~p~~~i~W~~~~~~~~----------~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~a 189 (212)
.++.+|+++.|.|... +...+.+.|+|....+. .....|++. ..+-....|.|.+++.+|+|.|.|..
T Consensus 25 v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F 104 (189)
T PHA02987 25 ITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIF 104 (189)
T ss_pred EEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEE
Confidence 5678899999999984 55667899998643221 111235553 33333579999999999999999998
Q ss_pred Ec-ccc-cceecceEEEEecc
Q psy2441 190 EN-EVG-TEYSPSTMLYVKGT 208 (212)
Q Consensus 190 ~n-~~g-~~~~~~~~l~v~~~ 208 (212)
.- ..| ..+.. ..|.|+..
T Consensus 105 ~tfp~G~~~~gt-~CLtVt~~ 124 (189)
T PHA02987 105 NTLLSKNNEKGV-VCLNVTTD 124 (189)
T ss_pred EecCCCCCceeE-EEEEEEch
Confidence 64 345 34333 67777653
No 235
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=98.34 E-value=2.1e-06 Score=51.45 Aligned_cols=23 Identities=22% Similarity=0.664 Sum_probs=21.5
Q ss_pred CCeEEEEcccCCCCCCcEEEEeC
Q psy2441 44 SHTTVLHCSASGNPPPKISWIRE 66 (212)
Q Consensus 44 g~~v~l~C~~~~~p~~~v~W~k~ 66 (212)
|+.+.|.|.+.+.|.|.|.|+|+
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~ 23 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKH 23 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEe
Confidence 78999999999999999999994
No 236
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.34 E-value=3.2e-06 Score=50.83 Aligned_cols=34 Identities=21% Similarity=0.388 Sum_probs=29.5
Q ss_pred CccEEeeCCeEEEEccc-CCCCCCcEEEEeCCEEe
Q psy2441 37 STKVVEISHTTVLHCSA-SGNPPPKISWIREMLPV 70 (212)
Q Consensus 37 ~~~~v~~g~~v~l~C~~-~~~p~~~v~W~k~g~~l 70 (212)
....+.+|+.+.|.|.. .+.|.+.+.|+|++.++
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~ 45 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPN 45 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCccc
Confidence 45678899999999987 77899999999998765
No 237
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.32 E-value=1.3e-06 Score=50.89 Aligned_cols=63 Identities=32% Similarity=0.696 Sum_probs=45.3
Q ss_pred CeEEeCCCccEEeeCCeEEEEcccCCCCCCcEEEEeCCEEecCCCCCeeEE--eecCCCCeEEEeeeC
Q psy2441 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNL--LTSGAPGTYIKIKPN 95 (212)
Q Consensus 30 p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~l~~~~~~~~~~--~~~~~~g~~l~i~~~ 95 (212)
|.+...+ ..+.+|+.+.|.|.+.+.|...+.|++++..+....+. +.+ ...++.|.|.|....
T Consensus 2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~~g~y~C~~~~ 66 (80)
T PF13895_consen 2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQNG-LFIPNVSPEDSGNYTCRASN 66 (80)
T ss_dssp -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESSE-EEESSEEGGGTEEEEEEEEE
T ss_pred cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeeee-eeeeeeccccCEEEEEEEEe
Confidence 4444333 67899999999999998888899999999888754221 222 122478888888765
No 238
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.31 E-value=3.6e-06 Score=51.86 Aligned_cols=68 Identities=22% Similarity=0.370 Sum_probs=46.3
Q ss_pred EecCCcEEEEEeeeeCCCCceEEEeCCEE----e------cC-C---------CCCceEEcCCCCceeEEEcCCCCCCCe
Q psy2441 124 VEISHTTVLHCSASGNPPPKISWIREMLP----V------DT-S---------RNPRYNLLTSGAPGALQITNSIEEDQG 183 (212)
Q Consensus 124 ~~~g~~~~l~C~~~~~p~~~i~W~~~~~~----~------~~-~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g 183 (212)
+.+|+.+.|.|.........+.|++.... . .. . ...++....+.....|.|.++..+|+|
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg 82 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG 82 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence 56799999999986554567999984421 0 00 0 012343323334568999999999999
Q ss_pred eEEEEEEc
Q psy2441 184 KYECVAEN 191 (212)
Q Consensus 184 ~y~C~a~n 191 (212)
+|.|.+.+
T Consensus 83 tY~Ca~~~ 90 (104)
T cd05720 83 YYFCSVAS 90 (104)
T ss_pred EEEEEEcc
Confidence 99998753
No 239
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.31 E-value=9.9e-06 Score=47.22 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=44.4
Q ss_pred eEecCCcEEEEEeeeeCCC--CceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcc
Q psy2441 123 VVEISHTTVLHCSASGNPP--PKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENE 192 (212)
Q Consensus 123 ~~~~g~~~~l~C~~~~~p~--~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~ 192 (212)
.+..|+++.|+|+....+. +.|.|...+...-.. ...+ ..+|.+..+...|+|.++|.+...
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~------~~~~--~ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQI------LNQD--KKTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCcccee------ccCC--ccEEEeceeCcccCCEEEEEEEEC
Confidence 3567999999999965444 499998644321110 1112 278999999999999999999754
No 240
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.31 E-value=3.6e-06 Score=49.84 Aligned_cols=28 Identities=29% Similarity=0.629 Sum_probs=23.7
Q ss_pred CeEEEEcccCCCCCC--cEEEEeCCEEecC
Q psy2441 45 HTTVLHCSASGNPPP--KISWIREMLPVDT 72 (212)
Q Consensus 45 ~~v~l~C~~~~~p~~--~v~W~k~g~~l~~ 72 (212)
+.+.|.|.+.+.|.+ .+.|+|+|.++..
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~ 30 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDF 30 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeec
Confidence 468999999998877 5799999998754
No 241
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.30 E-value=9.2e-06 Score=49.07 Aligned_cols=70 Identities=19% Similarity=0.276 Sum_probs=44.7
Q ss_pred CCccEEeeCCeEEEEcccCCCCCCcEEEEeCCEEecCC------CCCeeEEeecCCCCeEEEeeeCCccceeEEee
Q psy2441 36 PSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTS------RNPRYNLLTSGAPGTYIKIKPNLFSPLSVYSA 105 (212)
Q Consensus 36 ~~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~l~~~------~~~~~~~~~~~~~g~~l~i~~~~~~~~~v~~~ 105 (212)
..++.+.+|+++.|.|.+.+.|.+.|.|+|++..+... ...|+.+.........|.|.++...+-..|.+
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC 79 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTC 79 (95)
T ss_pred cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEE
Confidence 35778999999999999999999999999987543111 01444433322223445555555555554444
No 242
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=98.28 E-value=1.8e-06 Score=49.23 Aligned_cols=26 Identities=38% Similarity=0.705 Sum_probs=22.8
Q ss_pred EEEEcccCCCCCCcEEEEeCCEEecC
Q psy2441 47 TVLHCSASGNPPPKISWIREMLPVDT 72 (212)
Q Consensus 47 v~l~C~~~~~p~~~v~W~k~g~~l~~ 72 (212)
+.|.|.+.|.|.|.+.|+|++.++..
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~ 26 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPA 26 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCC
Confidence 47899999999999999999887654
No 243
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.26 E-value=4.1e-06 Score=50.27 Aligned_cols=46 Identities=24% Similarity=0.326 Sum_probs=34.4
Q ss_pred CCCccEEeeCCeEEEEcc-cCCCCCCcEEEEeCCEEecCCCCCeeEEe
Q psy2441 35 APSTKVVEISHTTVLHCS-ASGNPPPKISWIREMLPVDTSRNPRYNLL 81 (212)
Q Consensus 35 ~~~~~~v~~g~~v~l~C~-~~~~p~~~v~W~k~g~~l~~~~~~~~~~~ 81 (212)
....+.+.+|+.+.|.|. ..|+|.|.|.|++++..+... +.|+.+.
T Consensus 9 ~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~-~~Ri~~~ 55 (95)
T cd05845 9 KIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQ-DERVSMG 55 (95)
T ss_pred ccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccc-cccEEEC
Confidence 346788999999999997 589999999999876543221 3555544
No 244
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.25 E-value=1.7e-05 Score=50.22 Aligned_cols=74 Identities=24% Similarity=0.290 Sum_probs=48.9
Q ss_pred CcceeEecCCcEEEEEeeeeCC------CCceEEEeCCEE------ec-CC--------CCCceEEc--CCCCceeEEEc
Q psy2441 119 PSTKVVEISHTTVLHCSASGNP------PPKISWIREMLP------VD-TS--------RNPRYNLL--TSGAPGALQIT 175 (212)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~~p------~~~i~W~~~~~~------~~-~~--------~~~~~~~~--~~~~~~~l~i~ 175 (212)
|....+.+|+.+.|.|...... ...+.|++.... .. .. ...|+... ......+|.|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 4446688899999999875322 246899985321 10 00 12355442 22334789999
Q ss_pred CCCCCCCeeEEEEEEcc
Q psy2441 176 NSIEEDQGKYECVAENE 192 (212)
Q Consensus 176 ~~~~~d~g~y~C~a~n~ 192 (212)
+++.+|+|.|.|.+...
T Consensus 86 ~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 86 DAQPEDSGKYFFRVELG 102 (119)
T ss_pred cCChhhCeEEEEEEEcC
Confidence 99999999999988653
No 245
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.23 E-value=6.4e-06 Score=47.60 Aligned_cols=27 Identities=26% Similarity=0.794 Sum_probs=23.8
Q ss_pred EEEEcccCCCCCCcEEEEeCCEEecCC
Q psy2441 47 TVLHCSASGNPPPKISWIREMLPVDTS 73 (212)
Q Consensus 47 v~l~C~~~~~p~~~v~W~k~g~~l~~~ 73 (212)
+.|.|.+.|.|.|.+.|+|++..+...
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~ 27 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPK 27 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCC
Confidence 368999999999999999999988654
No 246
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.22 E-value=1.7e-05 Score=46.73 Aligned_cols=34 Identities=38% Similarity=0.784 Sum_probs=29.6
Q ss_pred cEEeeCCeEEEEcccCCCCCCcEEEEeCCEEecC
Q psy2441 39 KVVEISHTTVLHCSASGNPPPKISWIREMLPVDT 72 (212)
Q Consensus 39 ~~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~l~~ 72 (212)
..+.+|+.+.|.|.+.+.|.+.+.|+|++..+..
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~ 37 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKK 37 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcc
Confidence 3466899999999999999999999999988764
No 247
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.21 E-value=6.9e-06 Score=49.29 Aligned_cols=58 Identities=12% Similarity=0.279 Sum_probs=39.1
Q ss_pred ccEEeeCCeEEEEcccCC-----CCCCcEEEEeCCEEecCCC-----CCeeEEeec--CCCCeEEEeeeC
Q psy2441 38 TKVVEISHTTVLHCSASG-----NPPPKISWIREMLPVDTSR-----NPRYNLLTS--GAPGTYIKIKPN 95 (212)
Q Consensus 38 ~~~v~~g~~v~l~C~~~~-----~p~~~v~W~k~g~~l~~~~-----~~~~~~~~~--~~~g~~l~i~~~ 95 (212)
.+.+.+|..+.|.|...+ +|.|.+.|||++.++.... ...+.+... +|.|.|.|....
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n 73 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTF 73 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEe
Confidence 456789999999999743 2577999999999987541 122223222 366677766654
No 248
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.19 E-value=1.9e-05 Score=47.63 Aligned_cols=68 Identities=19% Similarity=0.299 Sum_probs=39.4
Q ss_pred CCcEEEEEeeeeC-CCC-ceEEEeCCEEecCC-CCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccc
Q psy2441 127 SHTTVLHCSASGN-PPP-KISWIREMLPVDTS-RNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVG 194 (212)
Q Consensus 127 g~~~~l~C~~~~~-p~~-~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g 194 (212)
++.+.|.|.+.|. |.. .+.|++++...... ....+....++.......-.+...+.+.|+|.+.+..-
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~ 84 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGL 84 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence 6789999999995 443 88999998633222 11122222222111112222344478899999987543
No 249
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.18 E-value=1.2e-05 Score=46.31 Aligned_cols=27 Identities=22% Similarity=0.608 Sum_probs=23.7
Q ss_pred EEEEcccCC-CCCCcEEEEeCCEEecCC
Q psy2441 47 TVLHCSASG-NPPPKISWIREMLPVDTS 73 (212)
Q Consensus 47 v~l~C~~~~-~p~~~v~W~k~g~~l~~~ 73 (212)
+.|.|.+.+ .|.+.+.|+|+|.++...
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~ 28 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRK 28 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeecccc
Confidence 368999999 999999999999988654
No 250
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.18 E-value=1.3e-05 Score=47.35 Aligned_cols=28 Identities=29% Similarity=0.660 Sum_probs=23.9
Q ss_pred CeEEEEcccCCCCCC--cEEEEeCCEEecC
Q psy2441 45 HTTVLHCSASGNPPP--KISWIREMLPVDT 72 (212)
Q Consensus 45 ~~v~l~C~~~~~p~~--~v~W~k~g~~l~~ 72 (212)
+.+.|.|.+.|.|.| .+.|+|+|.++..
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~ 30 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDL 30 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccc
Confidence 468999999999887 5899999988854
No 251
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.17 E-value=1.7e-05 Score=43.49 Aligned_cols=29 Identities=31% Similarity=0.834 Sum_probs=25.8
Q ss_pred eCCeEEEEcccCCCCCCcEEEEeCCEEec
Q psy2441 43 ISHTTVLHCSASGNPPPKISWIREMLPVD 71 (212)
Q Consensus 43 ~g~~v~l~C~~~~~p~~~v~W~k~g~~l~ 71 (212)
+|+.+.|.|.+.+.+.+.+.|++++..+.
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~ 29 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP 29 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC
Confidence 58899999999888888999999988766
No 252
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.15 E-value=1.2e-05 Score=46.98 Aligned_cols=24 Identities=38% Similarity=1.088 Sum_probs=22.2
Q ss_pred CCeEEEEcccCCCCCCcEEEEeCC
Q psy2441 44 SHTTVLHCSASGNPPPKISWIREM 67 (212)
Q Consensus 44 g~~v~l~C~~~~~p~~~v~W~k~g 67 (212)
|+.+.|.|.+.|.|.|.+.|||++
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~ 24 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQV 24 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecC
Confidence 789999999999999999999973
No 253
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.15 E-value=2.9e-05 Score=48.89 Aligned_cols=73 Identities=22% Similarity=0.387 Sum_probs=47.9
Q ss_pred CcceeEecCCcEEEEEeeeeCC--CCceEEEeCCE---E--e---c---------CCCCCceEEcCCC--CceeEEEcCC
Q psy2441 119 PSTKVVEISHTTVLHCSASGNP--PPKISWIREML---P--V---D---------TSRNPRYNLLTSG--APGALQITNS 177 (212)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~~---~--~---~---------~~~~~~~~~~~~~--~~~~l~i~~~ 177 (212)
+....+.+|+.+.|.|...... ...+.|++... + + . .....++....+. ....|.|.++
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 83 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL 83 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence 4446678899999999876543 45799998321 1 0 0 0012344443222 1347999999
Q ss_pred CCCCCeeEEEEEEc
Q psy2441 178 IEEDQGKYECVAEN 191 (212)
Q Consensus 178 ~~~d~g~y~C~a~n 191 (212)
..+|+|.|.|.+..
T Consensus 84 ~~~Dsa~YyCa~~~ 97 (117)
T cd04981 84 TPEDTAVYYCARGL 97 (117)
T ss_pred CHHHCEEEEEEEEc
Confidence 99999999998864
No 254
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.10 E-value=1.3e-05 Score=47.93 Aligned_cols=67 Identities=28% Similarity=0.490 Sum_probs=42.4
Q ss_pred CCcEEEEEee-eeCCCCceEEEeCCEEecCCCCCceEEcCC-CC---ceeEEEcCCCCCCCeeEEEEEEcccc
Q psy2441 127 SHTTVLHCSA-SGNPPPKISWIREMLPVDTSRNPRYNLLTS-GA---PGALQITNSIEEDQGKYECVAENEVG 194 (212)
Q Consensus 127 g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~-~~---~~~l~i~~~~~~d~g~y~C~a~n~~g 194 (212)
|+.+.+.|.+ .++|.|.|.|+.++..+... ......... +. .+.|.+..-...+...+.|.|.+..-
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVAS-NTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL 85 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEE-EEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeee-eeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence 6799999977 66899999999998777211 011111111 11 24666665444557799999998643
No 255
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.08 E-value=7.6e-06 Score=47.70 Aligned_cols=21 Identities=48% Similarity=1.017 Sum_probs=19.0
Q ss_pred EEEEcccCCCCCCcEEEEeCC
Q psy2441 47 TVLHCSASGNPPPKISWIREM 67 (212)
Q Consensus 47 v~l~C~~~~~p~~~v~W~k~g 67 (212)
++|.|.+.|+|.|.+.|+|++
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~ 21 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSK 21 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECC
Confidence 579999999999999999964
No 256
>KOG1480|consensus
Probab=98.07 E-value=2.2e-06 Score=68.12 Aligned_cols=83 Identities=24% Similarity=0.440 Sum_probs=63.4
Q ss_pred CCcceeEecCCcEEEEEee-eeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccc
Q psy2441 118 APSTKVVEISHTTVLHCSA-SGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTE 196 (212)
Q Consensus 118 ~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~ 196 (212)
.+....|..+..+.+.|.. .+.|.....|++++..+... ..+....+ ..+.+..+...|.|.|+|+|.|..+..
T Consensus 135 ~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd--~n~~~~~d---~~li~~~arlsd~~nytc~a~ni~~~r 209 (909)
T KOG1480|consen 135 SPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPD--ANVIRASD---HNLIISQARLSDSGNYTCEATNIVAKR 209 (909)
T ss_pred ChhhheecccccccccccCcccchhhhhhccccCCCCCcc--ccchhhhc---CCccccchhhhhcccceeeeehhhccc
Confidence 3444667778888899886 77888899999999877763 44444444 688999999999999999999988876
Q ss_pred eecceEEEE
Q psy2441 197 YSPSTMLYV 205 (212)
Q Consensus 197 ~~~~~~l~v 205 (212)
....+.+.|
T Consensus 210 ~~~~~~v~v 218 (909)
T KOG1480|consen 210 KSDPATVQV 218 (909)
T ss_pred cccceEEEE
Confidence 654454444
No 257
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.07 E-value=7.2e-05 Score=43.06 Aligned_cols=64 Identities=25% Similarity=0.429 Sum_probs=39.8
Q ss_pred EEEEEeeeeC-CC-CceEEEeCCEEecCC-CCCceEEcCCCC---ceeEEEcCCCCCCCeeEEEEEEccc
Q psy2441 130 TVLHCSASGN-PP-PKISWIREMLPVDTS-RNPRYNLLTSGA---PGALQITNSIEEDQGKYECVAENEV 193 (212)
Q Consensus 130 ~~l~C~~~~~-p~-~~i~W~~~~~~~~~~-~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~a~n~~ 193 (212)
+.|.|.+.+. |. ..+.|++++..+... .........++. .+.|.+.....++...|+|.+.+..
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 6799999885 44 489999999874332 001111111211 3456666556677789999997753
No 258
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=98.05 E-value=3.3e-05 Score=45.52 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=23.3
Q ss_pred CeEEEEcccCC--CCCCcEEEEeCCEEecC
Q psy2441 45 HTTVLHCSASG--NPPPKISWIREMLPVDT 72 (212)
Q Consensus 45 ~~v~l~C~~~~--~p~~~v~W~k~g~~l~~ 72 (212)
+++.|.|.+.+ .+++.|.|+|||.+|..
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~ 30 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDF 30 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcc
Confidence 46899999966 55778999999999963
No 259
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.05 E-value=0.00013 Score=45.29 Aligned_cols=69 Identities=13% Similarity=0.343 Sum_probs=42.7
Q ss_pred EecCCcEEEEEeeeeC-CC-CceEEEeCCEEecCCCCCceEEcCCC-C---ceeEEEcCCCCCCCeeEEEEEEccc
Q psy2441 124 VEISHTTVLHCSASGN-PP-PKISWIREMLPVDTSRNPRYNLLTSG-A---PGALQITNSIEEDQGKYECVAENEV 193 (212)
Q Consensus 124 ~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~~~~~~~~-~---~~~l~i~~~~~~d~g~y~C~a~n~~ 193 (212)
...|+.+.|.|.+.+. |. ..+.|++||..+... ...+....++ . .+.|.+.....++...|.|.+.+..
T Consensus 18 ~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~-~~~~~p~~d~~ty~~~S~L~~~~~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 18 ANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAE-QPNITPEGDSVSYNVTSTVQVKLTEDDVHSQVTCEVQHRT 92 (111)
T ss_pred cCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccc-ccceeeCCCCCcEEEEEEEEEECccccccCceEEEEEeCC
Confidence 4468889999999884 43 589999999987543 1112111221 1 2345555433333346999998864
No 260
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.04 E-value=2.4e-05 Score=46.02 Aligned_cols=61 Identities=20% Similarity=0.293 Sum_probs=40.8
Q ss_pred CccEEeeCCeEEEEcccCCCCCCcEEEEeCCEEecCCCCCeeEEeecCCCCeEEEeeeCCccceeEEee
Q psy2441 37 STKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTYIKIKPNLFSPLSVYSA 105 (212)
Q Consensus 37 ~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~g~~l~i~~~~~~~~~v~~~ 105 (212)
...++.+|.++.|.|...+. .+.+.|+++|.++..+ .++..... | +.|..+...+...|.+
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~--~r~~~~~~---G--LlI~~~~~~dsG~Y~C 64 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQ--FSYRVGTD---G--LLILVTSPEHSGTYRC 64 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCC--cceEEeCC---C--CEEEECCHhhCEEEEE
Confidence 45788999999999999764 6689999999988754 44443322 1 3344444444444443
No 261
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.04 E-value=4.4e-05 Score=46.20 Aligned_cols=31 Identities=19% Similarity=0.366 Sum_probs=26.4
Q ss_pred CCccEEeeCCeEEEEcccCCCCCCcEEEEeC
Q psy2441 36 PSTKVVEISHTTVLHCSASGNPPPKISWIRE 66 (212)
Q Consensus 36 ~~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~ 66 (212)
+.++.+.+|+++.|.|.+.+.+.+.+.|++.
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p 34 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNP 34 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCC
Confidence 3467789999999999998888889999863
No 262
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.04 E-value=3.4e-05 Score=43.17 Aligned_cols=64 Identities=41% Similarity=0.687 Sum_probs=44.6
Q ss_pred EEEEEeeeeCCCCceEEEeCCEEecCCCCC--ceEEcCCCCceeEEEcCCCCCCCeeEEEEEEccc
Q psy2441 130 TVLHCSASGNPPPKISWIREMLPVDTSRNP--RYNLLTSGAPGALQITNSIEEDQGKYECVAENEV 193 (212)
Q Consensus 130 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~ 193 (212)
+.|.|.+.+.+...+.|++++......... ............|.+.++...|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 368999988777899999988765543100 0001111124789999999999999999998765
No 263
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=98.03 E-value=3.6e-05 Score=46.37 Aligned_cols=70 Identities=20% Similarity=0.283 Sum_probs=42.1
Q ss_pred cCCcEEEEEeeeeC-CC-CceEEEeCCEEecCCCCCceEEcCCCC----ceeEEEcCCCCCCCeeEEEEEEccccc
Q psy2441 126 ISHTTVLHCSASGN-PP-PKISWIREMLPVDTSRNPRYNLLTSGA----PGALQITNSIEEDQGKYECVAENEVGT 195 (212)
Q Consensus 126 ~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~a~n~~g~ 195 (212)
.++.+.|.|.+.+. |. ..+.|.+++..+............+++ .+.|.+..-...+...|.|.+.+....
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 35668999999884 43 478999999886332000001111111 244555544445677999999876543
No 264
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.02 E-value=2.3e-05 Score=47.82 Aligned_cols=70 Identities=19% Similarity=0.274 Sum_probs=43.3
Q ss_pred EecCCcEEEEEeeeeC-C-CCceEEEeCCEEecCC-CCCceEEcCCCC---ceeEEEcCCCCCCCeeEEEEEEccc
Q psy2441 124 VEISHTTVLHCSASGN-P-PPKISWIREMLPVDTS-RNPRYNLLTSGA---PGALQITNSIEEDQGKYECVAENEV 193 (212)
Q Consensus 124 ~~~g~~~~l~C~~~~~-p-~~~i~W~~~~~~~~~~-~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~a~n~~ 193 (212)
...++.+.|.|.+.+. | ...+.|++||..+... .........++. .+.|.+..-...+...|+|.+....
T Consensus 14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence 4457789999999884 4 3488999999887533 001111111211 2445555444455779999998764
No 265
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.00 E-value=6.4e-05 Score=45.61 Aligned_cols=66 Identities=12% Similarity=0.132 Sum_probs=41.7
Q ss_pred CccEEeeCCeEEEEcccC-----------CCCCCcEEEEeCCEEecCCCC-----CeeEEee-------c--CCCCeEEE
Q psy2441 37 STKVVEISHTTVLHCSAS-----------GNPPPKISWIREMLPVDTSRN-----PRYNLLT-------S--GAPGTYIK 91 (212)
Q Consensus 37 ~~~~v~~g~~v~l~C~~~-----------~~p~~~v~W~k~g~~l~~~~~-----~~~~~~~-------~--~~~g~~l~ 91 (212)
....+.+|+++.|.|... ......+.|||++..+..... .|+.... . +|+|.|.|
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C 87 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTC 87 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEE
Confidence 346788999999999972 122347999999755443210 1333222 2 48888888
Q ss_pred eeeCCccceeE
Q psy2441 92 IKPNLFSPLSV 102 (212)
Q Consensus 92 i~~~~~~~~~v 102 (212)
+..+......+
T Consensus 88 ~~rN~t~C~~~ 98 (104)
T cd05896 88 VLRNSTYCMKV 98 (104)
T ss_pred EECCCCcceEE
Confidence 88775544443
No 266
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.99 E-value=6.6e-05 Score=45.02 Aligned_cols=67 Identities=16% Similarity=0.301 Sum_probs=40.0
Q ss_pred cCCcEEEEEeeeeCCCC--ceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcc
Q psy2441 126 ISHTTVLHCSASGNPPP--KISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENE 192 (212)
Q Consensus 126 ~g~~~~l~C~~~~~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~ 192 (212)
.|+...|.|.+.+..++ .+.|.+||..+.......+....++.......-.+...+...|.|.+...
T Consensus 14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred CCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 46677999999985443 77999999987621111121222211111122234456777999999874
No 267
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.99 E-value=0.00018 Score=43.49 Aligned_cols=71 Identities=23% Similarity=0.289 Sum_probs=43.1
Q ss_pred cEEEEEeeeeC-CCCceEEEeCCE----Eec-----------CCCCCceEEcCC-CCceeEEEcCCCCCCCeeEEEEEEc
Q psy2441 129 TTVLHCSASGN-PPPKISWIREML----PVD-----------TSRNPRYNLLTS-GAPGALQITNSIEEDQGKYECVAEN 191 (212)
Q Consensus 129 ~~~l~C~~~~~-p~~~i~W~~~~~----~~~-----------~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~a~n 191 (212)
.+.|.|..... ....+.|.+... .+. .....|+.+... ....+|.|.+++.+|+|.|.|.+..
T Consensus 2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~t 81 (96)
T cd05889 2 KMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLVT 81 (96)
T ss_pred CEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEEe
Confidence 56788887432 234677887421 110 011234443321 1247999999999999999999976
Q ss_pred -ccccceec
Q psy2441 192 -EVGTEYSP 199 (212)
Q Consensus 192 -~~g~~~~~ 199 (212)
..|.....
T Consensus 82 ~P~g~~~~~ 90 (96)
T cd05889 82 YPQGSWEKV 90 (96)
T ss_pred CCCCCeEEE
Confidence 45655443
No 268
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.95 E-value=5.7e-05 Score=45.46 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=26.7
Q ss_pred cEEeeCCeEEEEcccCCCCCCcEEEEeCCEE
Q psy2441 39 KVVEISHTTVLHCSASGNPPPKISWIREMLP 69 (212)
Q Consensus 39 ~~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~ 69 (212)
+.+.+|+.|+|.|.+.+.+.+.+.||+++..
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k 32 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQI 32 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcE
Confidence 4678999999999999888899999987633
No 269
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.93 E-value=0.00014 Score=43.83 Aligned_cols=66 Identities=23% Similarity=0.430 Sum_probs=39.4
Q ss_pred CcEEEEEee-eeCCCCceEEEeCCEEecCCCCCceEEcCCCC---ceeEEEcCCCCCCCeeEEEEEEcccccc
Q psy2441 128 HTTVLHCSA-SGNPPPKISWIREMLPVDTSRNPRYNLLTSGA---PGALQITNSIEEDQGKYECVAENEVGTE 196 (212)
Q Consensus 128 ~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~a~n~~g~~ 196 (212)
....+.|.+ .+.|.+.|.|+++. ............++. .+.|.+.....++...|+|.+.|..-..
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~---~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~ 85 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTL---GGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQE 85 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCC---CCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence 356889998 67999999999961 111001111111111 2466665445555669999999875433
No 270
>PHA03376 BARF1; Provisional
Probab=97.93 E-value=0.0019 Score=43.43 Aligned_cols=114 Identities=9% Similarity=0.118 Sum_probs=58.1
Q ss_pred ccEEeeCCeEEEEcccCCC---CCCcEEEEeCCE----E-ec--------C--CCCCeeEE---------e--ec--CCC
Q psy2441 38 TKVVEISHTTVLHCSASGN---PPPKISWIREML----P-VD--------T--SRNPRYNL---------L--TS--GAP 86 (212)
Q Consensus 38 ~~~v~~g~~v~l~C~~~~~---p~~~v~W~k~g~----~-l~--------~--~~~~~~~~---------~--~~--~~~ 86 (212)
.+.+..|+++.|+|..... +.-.|.|+|.+. - +. . .+-.++.+ . .. .|+
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 5677889999999998622 334699999421 0 00 0 00122222 1 11 377
Q ss_pred CeEEEeeeCCccceeEEeecCCCCCCCccccCCcceeEecCCcEEEEEeeeeCCCCceEEEeCCEE
Q psy2441 87 GTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLP 152 (212)
Q Consensus 87 g~~l~i~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~ 152 (212)
|.|.|+..-..........-.+.. +-.+...........-+-.++.|.+.|.|.|+++|.-+...
T Consensus 100 GtY~C~fQkge~~~~k~ehLt~V~-~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~~ 164 (221)
T PHA03376 100 GNYLCRMKLGETEVTKQEHLSVVK-PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGV 164 (221)
T ss_pred ceEEEEEEcCCCceeeeeeeeeee-cceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccCC
Confidence 788876665222111111100000 00011111000011134568999988999999999876543
No 271
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.92 E-value=7e-05 Score=43.60 Aligned_cols=60 Identities=30% Similarity=0.465 Sum_probs=39.0
Q ss_pred cEEEEEeeeeCCCC--ceEEEeCCE--E---ec----------C-CCCCceEEcCC--CCceeEEEcCCCCCCCeeEEEE
Q psy2441 129 TTVLHCSASGNPPP--KISWIREML--P---VD----------T-SRNPRYNLLTS--GAPGALQITNSIEEDQGKYECV 188 (212)
Q Consensus 129 ~~~l~C~~~~~p~~--~i~W~~~~~--~---~~----------~-~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~ 188 (212)
.+.|.|.......+ .+.|++... . +. . ....++..... ....+|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 36789988665543 788987431 0 00 0 11244544433 3457899999999999999995
No 272
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.90 E-value=7.9e-05 Score=44.83 Aligned_cols=64 Identities=22% Similarity=0.424 Sum_probs=38.6
Q ss_pred cCCcEEEEEeeeeCCC--CceEEEeCCEEecCCC-CCceEEcCCCC---ceeEEEcCCCCCCCeeEEEEEEcc
Q psy2441 126 ISHTTVLHCSASGNPP--PKISWIREMLPVDTSR-NPRYNLLTSGA---PGALQITNSIEEDQGKYECVAENE 192 (212)
Q Consensus 126 ~g~~~~l~C~~~~~p~--~~i~W~~~~~~~~~~~-~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~a~n~ 192 (212)
.++...|.|.+.|..+ ..+.|.+||..+.... ........++. .+.|.+. ..+...|+|.+...
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~ 83 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHW 83 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeC
Confidence 3566799999999543 4789999998875430 01111111211 1334443 34566999999875
No 273
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.89 E-value=0.00012 Score=40.11 Aligned_cols=60 Identities=27% Similarity=0.482 Sum_probs=40.2
Q ss_pred ecCCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEEE
Q psy2441 125 EISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLY 204 (212)
Q Consensus 125 ~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~ 204 (212)
..|..|.|+|...+. .+.|.+++...+.. . ..+.+.+-. +++|.|.|.+.+. . ..|.
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~-~-----------~~~~~~~~~-e~~G~Y~C~~~~~------~-~~lY 61 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGS-D-----------EKYLSLNHF-SSSGYYHCTADNA------N-HTLY 61 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccCCCC-C-----------ceEEeeccC-CCCceEEEEeCCC------c-EEEE
Confidence 358999999986532 39999998554432 1 344555555 7899999998542 1 5666
Q ss_pred Eec
Q psy2441 205 VKG 207 (212)
Q Consensus 205 v~~ 207 (212)
+++
T Consensus 62 LKa 64 (65)
T cd07692 62 LKA 64 (65)
T ss_pred EEc
Confidence 654
No 274
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=97.88 E-value=0.00015 Score=43.62 Aligned_cols=69 Identities=12% Similarity=0.169 Sum_probs=44.6
Q ss_pred CccEEeeCCeEEEEcccCCCCCCcEEEEeCCEEec------CCCCCeeEEeecCCCCeEEEeeeCCccceeEEee
Q psy2441 37 STKVVEISHTTVLHCSASGNPPPKISWIREMLPVD------TSRNPRYNLLTSGAPGTYIKIKPNLFSPLSVYSA 105 (212)
Q Consensus 37 ~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~l~------~~~~~~~~~~~~~~~g~~l~i~~~~~~~~~v~~~ 105 (212)
.++++.+|+++.|.|.+.+.....+.|++-+..+- ...+.||.+...++....|.|.++...+..+|.+
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~C 79 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFC 79 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEE
Confidence 46789999999999999887666688887653321 0123677766533333445666665555555554
No 275
>PHA03376 BARF1; Provisional
Probab=97.87 E-value=0.00018 Score=48.11 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=49.7
Q ss_pred ceeEecCCcEEEEEeeee---CCCCceEEEeCCE----Ee-c--------C--CCCCceEEcCCCCceeEEEcCCCCCCC
Q psy2441 121 TKVVEISHTTVLHCSASG---NPPPKISWIREML----PV-D--------T--SRNPRYNLLTSGAPGALQITNSIEEDQ 182 (212)
Q Consensus 121 ~~~~~~g~~~~l~C~~~~---~p~~~i~W~~~~~----~~-~--------~--~~~~~~~~~~~~~~~~l~i~~~~~~d~ 182 (212)
...+..|+.+.|+|.-.. ...-.|.|+|.+. .+ . . ....++++..+.+..+|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 355677999999998742 2334899999421 11 0 0 123445554444557999999999999
Q ss_pred eeEEEEEEcc
Q psy2441 183 GKYECVAENE 192 (212)
Q Consensus 183 g~y~C~a~n~ 192 (212)
|.|.|..+..
T Consensus 100 GtY~C~fQkg 109 (221)
T PHA03376 100 GNYLCRMKLG 109 (221)
T ss_pred ceEEEEEEcC
Confidence 9999999754
No 276
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.87 E-value=0.00019 Score=43.22 Aligned_cols=66 Identities=20% Similarity=0.302 Sum_probs=40.3
Q ss_pred cCCcEEEEEeeeeCCCC--ceEEEeCCEEecCC-CCCceEEcCCCC---ceeEEEcCCCCCCCeeEEEEEEcccc
Q psy2441 126 ISHTTVLHCSASGNPPP--KISWIREMLPVDTS-RNPRYNLLTSGA---PGALQITNSIEEDQGKYECVAENEVG 194 (212)
Q Consensus 126 ~g~~~~l~C~~~~~p~~--~i~W~~~~~~~~~~-~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~a~n~~g 194 (212)
.|+...|.|.+.+..++ .+.|++++..+... .........++. .+.|.+ ..++...|.|.+....-
T Consensus 13 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~---~~~~~~~ysC~V~H~~l 84 (94)
T cd05766 13 LSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLET---TPSRGDTYTCVVEHSSL 84 (94)
T ss_pred CCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEE---cCCCCCEEEEEEEeCCC
Confidence 57889999999985443 77999999886553 111111111111 123333 34456699999987643
No 277
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.87 E-value=9.6e-05 Score=44.70 Aligned_cols=72 Identities=11% Similarity=0.210 Sum_probs=40.8
Q ss_pred eeEecCCcEEEEEeeeeC-CCC--ceEEEeCCEEecCCCCCceEEcCCCC---ceeEEEcCCCCCCCeeEEEEEEccc
Q psy2441 122 KVVEISHTTVLHCSASGN-PPP--KISWIREMLPVDTSRNPRYNLLTSGA---PGALQITNSIEEDQGKYECVAENEV 193 (212)
Q Consensus 122 ~~~~~g~~~~l~C~~~~~-p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~a~n~~ 193 (212)
..+..|+.+.|.|.+.+. .++ .+.|.+++...............++. .+.|.+..-...+...|.|.+....
T Consensus 9 ~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~ 86 (96)
T cd07696 9 KQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPD 86 (96)
T ss_pred HHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCC
Confidence 335558899999999988 333 77999987432211001111111211 1344444333344568999998764
No 278
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.85 E-value=8.6e-05 Score=45.04 Aligned_cols=42 Identities=14% Similarity=0.334 Sum_probs=33.3
Q ss_pred eEEeCCCccEEeeCCeEEEEcccCC-CCCCc--EEEEeCCEEecC
Q psy2441 31 QITEAPSTKVVEISHTTVLHCSASG-NPPPK--ISWIREMLPVDT 72 (212)
Q Consensus 31 ~~~~~~~~~~v~~g~~v~l~C~~~~-~p~~~--v~W~k~g~~l~~ 72 (212)
.+.+.+....+.+|+.++|.|.+.+ .|.+. |.|||++..|..
T Consensus 3 ~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~ 47 (100)
T cd05755 3 SVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSR 47 (100)
T ss_pred eEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEccc
Confidence 3445666666789999999999965 67775 799999998865
No 279
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=97.85 E-value=2.4e-05 Score=46.13 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=23.5
Q ss_pred CCeEEEEcccCCC--CCCcEEEEeCCEEe
Q psy2441 44 SHTTVLHCSASGN--PPPKISWIREMLPV 70 (212)
Q Consensus 44 g~~v~l~C~~~~~--p~~~v~W~k~g~~l 70 (212)
|+.+.|.|.+.+. |.+.+.|++++..+
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~ 29 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKR 29 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCccc
Confidence 7899999999988 78899999887654
No 280
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=97.82 E-value=9.6e-05 Score=44.48 Aligned_cols=36 Identities=17% Similarity=0.418 Sum_probs=28.0
Q ss_pred ccEEeeCCeEEEEccc-C----CCCCCcEEEEeCCEEecCC
Q psy2441 38 TKVVEISHTTVLHCSA-S----GNPPPKISWIREMLPVDTS 73 (212)
Q Consensus 38 ~~~v~~g~~v~l~C~~-~----~~p~~~v~W~k~g~~l~~~ 73 (212)
.+.+.+|.+..|.|.- . ..+.+.++||||+.+|...
T Consensus 4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~ 44 (95)
T cd05897 4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKD 44 (95)
T ss_pred eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCC
Confidence 3567789999999983 2 3466789999999998743
No 281
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.82 E-value=0.00014 Score=45.34 Aligned_cols=34 Identities=21% Similarity=0.441 Sum_probs=28.7
Q ss_pred EeCCCccEEeeCCeEEEEcccCCCCCCcEEEEeCC
Q psy2441 33 TEAPSTKVVEISHTTVLHCSASGNPPPKISWIREM 67 (212)
Q Consensus 33 ~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~g 67 (212)
...|....+.+|++++|.|.+.+ +...+.|||..
T Consensus 2 ~Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~ 35 (110)
T cd05899 2 TQSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQD 35 (110)
T ss_pred EECCCceEEcCCCcEEEEEEECC-CCCEEEEEEEC
Confidence 35677889999999999999977 66789999964
No 282
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=97.76 E-value=0.0002 Score=41.23 Aligned_cols=26 Identities=19% Similarity=0.552 Sum_probs=21.3
Q ss_pred EEEEcccCC-CCCCcEEEEeCCEEecC
Q psy2441 47 TVLHCSASG-NPPPKISWIREMLPVDT 72 (212)
Q Consensus 47 v~l~C~~~~-~p~~~v~W~k~g~~l~~ 72 (212)
+.|.|.+.+ .|.+.+.|||+|.++..
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~ 27 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGA 27 (76)
T ss_pred CEEEEecccCCCCCceEEEECCccccc
Confidence 468999864 67789999999988864
No 283
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.74 E-value=9.5e-05 Score=45.27 Aligned_cols=69 Identities=16% Similarity=0.361 Sum_probs=41.1
Q ss_pred ecCCcEEEEEeeeeCCCC--ceEEEeCCEEecCCCCCceEEcC----CCC---ceeEEEcCCCCCCCeeEEEEEEccc
Q psy2441 125 EISHTTVLHCSASGNPPP--KISWIREMLPVDTSRNPRYNLLT----SGA---PGALQITNSIEEDQGKYECVAENEV 193 (212)
Q Consensus 125 ~~g~~~~l~C~~~~~p~~--~i~W~~~~~~~~~~~~~~~~~~~----~~~---~~~l~i~~~~~~d~g~y~C~a~n~~ 193 (212)
..++.+.|.|.+.|..+. .+.|++++..+............ ++. .+.|.+..-...+...|+|.+....
T Consensus 14 ~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~ 91 (102)
T cd05768 14 SLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA 91 (102)
T ss_pred CcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence 346789999999985544 67999999876532100111111 111 2345554333445678999998754
No 284
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.74 E-value=0.0004 Score=41.85 Aligned_cols=63 Identities=22% Similarity=0.402 Sum_probs=38.0
Q ss_pred cEEEEEeee-eCCCCceEEEeCCEEecCCCCCceEEcCCCC---ceeEEEcCCCCCCCeeEEEEEEcccc
Q psy2441 129 TTVLHCSAS-GNPPPKISWIREMLPVDTSRNPRYNLLTSGA---PGALQITNSIEEDQGKYECVAENEVG 194 (212)
Q Consensus 129 ~~~l~C~~~-~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~a~n~~g 194 (212)
.+.+.|.+. +.|.+.|.|+++..... ........++. .+.|.+.....+|...|+|.+.|..-
T Consensus 17 ~~va~C~s~~gkPaa~IsW~~~~~g~~---~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al 83 (95)
T cd07703 17 VPVAKCVSANGRPPARISWSSTLGGNA---NTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETL 83 (95)
T ss_pred cEEEEEEcCCCCCCcEEEEEcCCCCCe---eEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCccc
Confidence 468999874 78899999998721110 01111111211 24566654455556699999999753
No 285
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=97.74 E-value=0.00017 Score=43.25 Aligned_cols=65 Identities=17% Similarity=0.257 Sum_probs=42.6
Q ss_pred CCeEEeCCCccEEeeCCeEEEEcccCCCCCCcEEEEeCCEEecCC------CCCeeEEeec--CCCCeEEEeeeC
Q psy2441 29 FPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTS------RNPRYNLLTS--GAPGTYIKIKPN 95 (212)
Q Consensus 29 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~l~~~------~~~~~~~~~~--~~~g~~l~i~~~ 95 (212)
+|.+...|. ..|.+|+.|+|.|... .+...+.|+|+|...... ....|.+... ++.|.|.|....
T Consensus 2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~ 74 (91)
T cd05751 2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRS 74 (91)
T ss_pred CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEEC
Confidence 566666664 4688999999999985 566789999998754321 1122444333 356777776544
No 286
>smart00409 IG Immunoglobulin.
Probab=97.70 E-value=0.00069 Score=39.37 Aligned_cols=44 Identities=25% Similarity=0.610 Sum_probs=33.8
Q ss_pred CccEEeeCCeEEEEcccCCCCCCcEEEEeC-CEEecCCCCCeeEEee
Q psy2441 37 STKVVEISHTTVLHCSASGNPPPKISWIRE-MLPVDTSRNPRYNLLT 82 (212)
Q Consensus 37 ~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~-g~~l~~~~~~~~~~~~ 82 (212)
....+.+|+++.|.|.+.+.+.+.+.|+++ +..+... .++....
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~--~~~~~~~ 46 (86)
T smart00409 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAES--GRFSVSR 46 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCC--CcEEEEE
Confidence 456778999999999998877889999998 7777633 4444443
No 287
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=97.70 E-value=0.00069 Score=39.37 Aligned_cols=44 Identities=25% Similarity=0.610 Sum_probs=33.8
Q ss_pred CccEEeeCCeEEEEcccCCCCCCcEEEEeC-CEEecCCCCCeeEEee
Q psy2441 37 STKVVEISHTTVLHCSASGNPPPKISWIRE-MLPVDTSRNPRYNLLT 82 (212)
Q Consensus 37 ~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~-g~~l~~~~~~~~~~~~ 82 (212)
....+.+|+++.|.|.+.+.+.+.+.|+++ +..+... .++....
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~--~~~~~~~ 46 (86)
T smart00410 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAES--GRFSVSR 46 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCC--CcEEEEE
Confidence 456778999999999998877889999998 7777633 4444443
No 288
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=97.66 E-value=0.00012 Score=40.56 Aligned_cols=29 Identities=28% Similarity=0.683 Sum_probs=24.4
Q ss_pred CCeEEEEccc-CCCCCCcEEEEeCCEEecC
Q psy2441 44 SHTTVLHCSA-SGNPPPKISWIREMLPVDT 72 (212)
Q Consensus 44 g~~v~l~C~~-~~~p~~~v~W~k~g~~l~~ 72 (212)
|+.+.|.|.+ .+.+...+.|+|++..+..
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~ 30 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPE 30 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccC
Confidence 7899999999 7778889999999865543
No 289
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.66 E-value=0.00037 Score=38.55 Aligned_cols=49 Identities=18% Similarity=0.462 Sum_probs=36.1
Q ss_pred CCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEc
Q psy2441 127 SHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAEN 191 (212)
Q Consensus 127 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n 191 (212)
.+++.|+|.+ ..+|.|++ |..+... . + .+|.+.....+-.|.|.|.+.+
T Consensus 6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~-------~-~---~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKK-GKEILEV-------S-N---TLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecC----CCcEEEec-Ccccccc-------c-c---cEEeccCcccCCCcceEecCcc
Confidence 4579999976 24699999 4433321 1 2 6888888888889999998877
No 290
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.65 E-value=0.0003 Score=44.00 Aligned_cols=73 Identities=18% Similarity=0.300 Sum_probs=43.9
Q ss_pred EecCCcEEEEEeeeeC-CC-CceEEEeCCEEecCCCC-CceEEcCCCC----ceeEEEcCCCCCC-CeeEEEEEEccccc
Q psy2441 124 VEISHTTVLHCSASGN-PP-PKISWIREMLPVDTSRN-PRYNLLTSGA----PGALQITNSIEED-QGKYECVAENEVGT 195 (212)
Q Consensus 124 ~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~-~~~~~~~~~~----~~~l~i~~~~~~d-~g~y~C~a~n~~g~ 195 (212)
...++.+.|.|.+.+. |. ..+.|++|+..+..... .......+++ .+.|.+......+ ...|.|.+......
T Consensus 15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~ 94 (115)
T cd05769 15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGT 94 (115)
T ss_pred hccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence 3346779999999885 43 38899999988764311 0111111111 2455555444434 56999999876443
Q ss_pred c
Q psy2441 196 E 196 (212)
Q Consensus 196 ~ 196 (212)
.
T Consensus 95 ~ 95 (115)
T cd05769 95 D 95 (115)
T ss_pred c
Confidence 3
No 291
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.64 E-value=0.0006 Score=42.09 Aligned_cols=35 Identities=23% Similarity=0.525 Sum_probs=28.7
Q ss_pred EEeCCCccEEeeCCeEEEEcccCCCC-CCcEEEEeC
Q psy2441 32 ITEAPSTKVVEISHTTVLHCSASGNP-PPKISWIRE 66 (212)
Q Consensus 32 ~~~~~~~~~v~~g~~v~l~C~~~~~p-~~~v~W~k~ 66 (212)
+...|....+.+|++|+|.|.+.+.. ...+.|||.
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq 38 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQ 38 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEE
Confidence 45677788999999999999987654 567999985
No 292
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=97.63 E-value=0.00025 Score=42.44 Aligned_cols=27 Identities=19% Similarity=0.444 Sum_probs=23.1
Q ss_pred cEEeeCCeEEEEcccCCCCCCcEEEEeC
Q psy2441 39 KVVEISHTTVLHCSASGNPPPKISWIRE 66 (212)
Q Consensus 39 ~~v~~g~~v~l~C~~~~~p~~~v~W~k~ 66 (212)
+.+.+|+++.|.|.. +.|.+.+.|||.
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq 32 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQ 32 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEE
Confidence 467899999999997 478889999984
No 293
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.60 E-value=0.001 Score=40.06 Aligned_cols=69 Identities=16% Similarity=0.333 Sum_probs=42.9
Q ss_pred eeEecCCcEEE-EEee-eeCCCCceEEEeCCEEecCCCCCceEEcCCCC---ceeEEEcCCCCCCCeeEEEEEEccc
Q psy2441 122 KVVEISHTTVL-HCSA-SGNPPPKISWIREMLPVDTSRNPRYNLLTSGA---PGALQITNSIEEDQGKYECVAENEV 193 (212)
Q Consensus 122 ~~~~~g~~~~l-~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~a~n~~ 193 (212)
..+.+|+.+.+ .|.+ .+.|.+.|.|+.+...... .......++. .+.+.+......|...++|.+.+..
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~---~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~a 84 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSE---SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPA 84 (97)
T ss_pred eEeecCcceeEEEEEccCCccCCEeEEeCCCCCccc---eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence 45677888888 8987 6788999999976322110 0011111111 2456665555566679999998864
No 294
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.59 E-value=0.00026 Score=44.05 Aligned_cols=35 Identities=17% Similarity=0.446 Sum_probs=27.6
Q ss_pred ccEEeeCCeEEEEcccCC-CCC-CcEEEEeCCEEecC
Q psy2441 38 TKVVEISHTTVLHCSASG-NPP-PKISWIREMLPVDT 72 (212)
Q Consensus 38 ~~~v~~g~~v~l~C~~~~-~p~-~~v~W~k~g~~l~~ 72 (212)
...+..|+.++|.|.+.+ +|. ..++|+|||..+..
T Consensus 15 ~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~ 51 (111)
T cd05772 15 SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSA 51 (111)
T ss_pred hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcc
Confidence 334557888999999987 454 57999999999864
No 295
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.57 E-value=0.00037 Score=40.97 Aligned_cols=66 Identities=20% Similarity=0.383 Sum_probs=41.4
Q ss_pred cCCcEEEEEeeeeC-CCC-ceEEEeCCEEecCCCCCceEE-cCCCC---ceeEEEcCCCCCCCeeEEEEEEcccc
Q psy2441 126 ISHTTVLHCSASGN-PPP-KISWIREMLPVDTSRNPRYNL-LTSGA---PGALQITNSIEEDQGKYECVAENEVG 194 (212)
Q Consensus 126 ~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~~~~~~~~~~~-~~~~~---~~~l~i~~~~~~d~g~y~C~a~n~~g 194 (212)
.++.+.|.|.+.+. |.. .|.|++++..+.......... ..++. .+.|.+. ..+...|.|.+.+...
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence 38899999999885 433 789999998876541111111 12221 2344444 5566699999987643
No 296
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=97.56 E-value=0.00024 Score=41.83 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=23.2
Q ss_pred CCeEEEEcccCCCCCCcEEEEeCCEE
Q psy2441 44 SHTTVLHCSASGNPPPKISWIREMLP 69 (212)
Q Consensus 44 g~~v~l~C~~~~~p~~~v~W~k~g~~ 69 (212)
|+++.|.|.+.+.|.+.+.|++.+..
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~ 26 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKD 26 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCcc
Confidence 78999999999999999999987754
No 297
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.54 E-value=0.00055 Score=39.89 Aligned_cols=28 Identities=21% Similarity=0.514 Sum_probs=23.3
Q ss_pred eEEEEcccCC-CCCCcEEEEeCCEEecCC
Q psy2441 46 TTVLHCSASG-NPPPKISWIREMLPVDTS 73 (212)
Q Consensus 46 ~v~l~C~~~~-~p~~~v~W~k~g~~l~~~ 73 (212)
.+.|.|.+.| .|++.|+|||++.++...
T Consensus 1 ~~~L~C~s~gSkP~A~I~W~k~~~~l~~~ 29 (82)
T cd05883 1 EIELNCTAMASKPAATIRWFKGNKELTGK 29 (82)
T ss_pred CEEEEEEecCCCCCCEEEEEECCEECcCc
Confidence 3689999965 688899999999998653
No 298
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.48 E-value=0.00073 Score=39.68 Aligned_cols=27 Identities=26% Similarity=0.660 Sum_probs=23.1
Q ss_pred EEEEcccCC-CCCCcEEEEeCCEEecCC
Q psy2441 47 TVLHCSASG-NPPPKISWIREMLPVDTS 73 (212)
Q Consensus 47 v~l~C~~~~-~p~~~v~W~k~g~~l~~~ 73 (212)
+.|.|.+.+ +|.+.|+|+|+|.+|...
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~ 29 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGA 29 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCc
Confidence 689999966 588899999999998753
No 299
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.48 E-value=0.00026 Score=43.22 Aligned_cols=44 Identities=25% Similarity=0.401 Sum_probs=31.8
Q ss_pred CCeEEeC-CCccEEeeCCeEEEEcccCC-CC-CCcEEEEeCCEEecC
Q psy2441 29 FPQITEA-PSTKVVEISHTTVLHCSASG-NP-PPKISWIREMLPVDT 72 (212)
Q Consensus 29 ~p~~~~~-~~~~~v~~g~~v~l~C~~~~-~p-~~~v~W~k~g~~l~~ 72 (212)
+|.+.+. |......+++.++|.|.+.| +| ...|+|++||.++..
T Consensus 1 pP~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~ 47 (100)
T cd07699 1 APSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSS 47 (100)
T ss_pred CCeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcc
Confidence 4555533 44445557888999999987 45 457999999999854
No 300
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.47 E-value=0.00065 Score=39.88 Aligned_cols=26 Identities=27% Similarity=0.676 Sum_probs=22.3
Q ss_pred EEEEcccCC-CCCCcEEEEeCCEEecC
Q psy2441 47 TVLHCSASG-NPPPKISWIREMLPVDT 72 (212)
Q Consensus 47 v~l~C~~~~-~p~~~v~W~k~g~~l~~ 72 (212)
+.|.|.+.+ +|...|+|+|+|..+..
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~ 28 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKD 28 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcC
Confidence 689999976 67888999999999865
No 301
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=97.46 E-value=6e-05 Score=43.06 Aligned_cols=35 Identities=46% Similarity=0.821 Sum_probs=25.8
Q ss_pred CCeEEeCCCccEEeeCCeEEEEcccCCCC-CCcEEEE
Q psy2441 29 FPQITEAPSTKVVEISHTTVLHCSASGNP-PPKISWI 64 (212)
Q Consensus 29 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p-~~~v~W~ 64 (212)
+|.+...+.......+. +.|.|.+.+.+ .+.+.|+
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~ 36 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY 36 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE
Confidence 46666666555444444 99999998877 7789999
No 302
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.45 E-value=0.0011 Score=40.05 Aligned_cols=66 Identities=15% Similarity=0.253 Sum_probs=37.9
Q ss_pred EecCCcEEEEEeeeeCCCC--ceEEEeCCEEecCCCCCceEEcCCCC----ceeEEEcCCCCCCCeeEEEEEEcc
Q psy2441 124 VEISHTTVLHCSASGNPPP--KISWIREMLPVDTSRNPRYNLLTSGA----PGALQITNSIEEDQGKYECVAENE 192 (212)
Q Consensus 124 ~~~g~~~~l~C~~~~~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~a~n~ 192 (212)
...++.+.|.|.+.+..++ .+.|.++|..+... ........++. .+.|.+..-. ....|+|.+...
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~-~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~ 84 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILG-SQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHE 84 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCC-eEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEEC
Confidence 3346778999999985443 77999999886543 01111111211 1233333221 244699999874
No 303
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.45 E-value=0.00069 Score=39.65 Aligned_cols=27 Identities=33% Similarity=0.644 Sum_probs=22.9
Q ss_pred eEEEEcccCC-CCCCcEEEEeCCEEecC
Q psy2441 46 TTVLHCSASG-NPPPKISWIREMLPVDT 72 (212)
Q Consensus 46 ~v~l~C~~~~-~p~~~v~W~k~g~~l~~ 72 (212)
.+.|.|.+.| +|.+.|+|+|+|.++..
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~ 28 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDG 28 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccC
Confidence 3689999976 68889999999998864
No 304
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.45 E-value=0.00096 Score=41.34 Aligned_cols=34 Identities=21% Similarity=0.402 Sum_probs=28.9
Q ss_pred eCCCccEEeeCCeEEEEcccCCCCCCcEEEEeCC
Q psy2441 34 EAPSTKVVEISHTTVLHCSASGNPPPKISWIREM 67 (212)
Q Consensus 34 ~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~g 67 (212)
..|..+.+.+|+++.|.|.+.+.+...+.|||..
T Consensus 3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~ 36 (109)
T cd04983 3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQY 36 (109)
T ss_pred ecCCceEEcCCCCEEEEEEECCCCccEEEEEEEC
Confidence 4567788999999999999987777789999953
No 305
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.41 E-value=0.00065 Score=40.96 Aligned_cols=39 Identities=18% Similarity=0.251 Sum_probs=29.0
Q ss_pred CCeEEeCCCccEEeeCCeEEEEcccCCCCCCcEEEEeCCEE
Q psy2441 29 FPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLP 69 (212)
Q Consensus 29 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~ 69 (212)
+|.+...| ...+.+|++|+|.|.... +...+.|||+|..
T Consensus 1 kP~l~a~p-~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~ 39 (94)
T cd05711 1 KPFLSAHP-SPVVPSGENVTLQCHSDI-RFDRFILYKEGRS 39 (94)
T ss_pred CCEEEecC-CCccCCCCeEEEEEecCC-CCCEEEEEECCCC
Confidence 35555555 456789999999998754 4557999998865
No 306
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.40 E-value=0.00095 Score=40.28 Aligned_cols=67 Identities=19% Similarity=0.282 Sum_probs=38.6
Q ss_pred cCCcEEEEEeeeeCCC--CceEEEeCCEEecCCC-CCceEEcCCCC---ceeEEEcCCCCCCCeeEEEEEEccc
Q psy2441 126 ISHTTVLHCSASGNPP--PKISWIREMLPVDTSR-NPRYNLLTSGA---PGALQITNSIEEDQGKYECVAENEV 193 (212)
Q Consensus 126 ~g~~~~l~C~~~~~p~--~~i~W~~~~~~~~~~~-~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~a~n~~ 193 (212)
.++.+.|.|.+.+..+ ..+.|.++|.. .... ........++. .+.|.+..-.......|.|.+....
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 3667899999998544 37889999987 3220 00011111221 2344444333333668999998754
No 307
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=97.40 E-value=0.0016 Score=39.45 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=32.1
Q ss_pred CccEEeeCCeEEEEcccCCCCCCc-EEEEeCCEEecCC
Q psy2441 37 STKVVEISHTTVLHCSASGNPPPK-ISWIREMLPVDTS 73 (212)
Q Consensus 37 ~~~~v~~g~~v~l~C~~~~~p~~~-v~W~k~g~~l~~~ 73 (212)
..+.|.+|+.+.|.|.+.++|.|. +.|.+++..+...
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~ 48 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNT 48 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCcc
Confidence 356789999999999999999997 9999998876554
No 308
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.38 E-value=0.0017 Score=40.73 Aligned_cols=33 Identities=24% Similarity=0.451 Sum_probs=27.3
Q ss_pred eCCCccEEeeCCeEEEEcccCC--CCCCcEEEEeC
Q psy2441 34 EAPSTKVVEISHTTVLHCSASG--NPPPKISWIRE 66 (212)
Q Consensus 34 ~~~~~~~v~~g~~v~l~C~~~~--~p~~~v~W~k~ 66 (212)
..|..+.+.+|+.++|.|.+.+ .+.+.+.|||.
T Consensus 3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq 37 (116)
T cd04982 3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQ 37 (116)
T ss_pred CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEE
Confidence 3566778899999999999866 56778999995
No 309
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.37 E-value=0.0015 Score=38.28 Aligned_cols=27 Identities=26% Similarity=0.609 Sum_probs=22.8
Q ss_pred EEEEcccCC-CCCCcEEEEeCCEEecCC
Q psy2441 47 TVLHCSASG-NPPPKISWIREMLPVDTS 73 (212)
Q Consensus 47 v~l~C~~~~-~p~~~v~W~k~g~~l~~~ 73 (212)
+.|.|.+.+ +|.+.|.||++|.++...
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~ 29 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGV 29 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCc
Confidence 689999965 588899999999998643
No 310
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.29 E-value=0.0009 Score=41.84 Aligned_cols=45 Identities=24% Similarity=0.392 Sum_probs=32.1
Q ss_pred CCeEE-eCCCccEEeeCCeEEEEcccCC-CCC-CcEEEEeCCEEecCC
Q psy2441 29 FPQIT-EAPSTKVVEISHTTVLHCSASG-NPP-PKISWIREMLPVDTS 73 (212)
Q Consensus 29 ~p~~~-~~~~~~~v~~g~~v~l~C~~~~-~p~-~~v~W~k~g~~l~~~ 73 (212)
+|.+. ..|....+.++..++|.|.+.+ +|. ..|+|+|||..+...
T Consensus 2 ~P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g 49 (115)
T cd05769 2 PPTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDG 49 (115)
T ss_pred CCEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCC
Confidence 45555 3344445556788999999988 455 379999999988754
No 311
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.27 E-value=0.001 Score=40.02 Aligned_cols=40 Identities=20% Similarity=0.426 Sum_probs=28.6
Q ss_pred CCeEEeCCCccEEeeCCeEEEEcccCCC-CCC-cEEEEeCCEEec
Q psy2441 29 FPQITEAPSTKVVEISHTTVLHCSASGN-PPP-KISWIREMLPVD 71 (212)
Q Consensus 29 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~-~v~W~k~g~~l~ 71 (212)
+|.+.+.+.... |+.++|.|.+.|. |.. .++|+|+|..+.
T Consensus 2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~ 43 (93)
T cd07698 2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSV 43 (93)
T ss_pred CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECc
Confidence 566665444332 7889999999984 554 799999996443
No 312
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.24 E-value=0.0018 Score=38.99 Aligned_cols=43 Identities=26% Similarity=0.563 Sum_probs=29.2
Q ss_pred CCeEEeCCCccEEeeCCeEEEEcccCC-CCC-CcEEEEeCCEEecC
Q psy2441 29 FPQITEAPSTKVVEISHTTVLHCSASG-NPP-PKISWIREMLPVDT 72 (212)
Q Consensus 29 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~p~-~~v~W~k~g~~l~~ 72 (212)
+|.+.+.+... ...|+..+|.|.+.| +|. ..++|.|||.++..
T Consensus 1 ~P~V~v~~~~~-~~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~ 45 (94)
T cd05767 1 PPEVTVFSLKP-VELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTD 45 (94)
T ss_pred CCEEEEEeCCc-ccCCCCeEEEEEEEEEECCcCEEEEEECCeEccC
Confidence 45554433321 234667899999988 454 46899999998765
No 313
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.19 E-value=0.0017 Score=39.01 Aligned_cols=30 Identities=27% Similarity=0.594 Sum_probs=24.2
Q ss_pred eeCCeEEEEcccCC-CCC-CcEEEEeCCEEec
Q psy2441 42 EISHTTVLHCSASG-NPP-PKISWIREMLPVD 71 (212)
Q Consensus 42 ~~g~~v~l~C~~~~-~p~-~~v~W~k~g~~l~ 71 (212)
..|+..+|.|.+.| +|. ..++|+|||.++.
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~ 44 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP 44 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC
Confidence 45777899999988 454 3689999999887
No 314
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.19 E-value=0.0021 Score=38.74 Aligned_cols=32 Identities=25% Similarity=0.601 Sum_probs=26.1
Q ss_pred eeCCeEEEEcccCC-CCCC-cEEEEeCCEEecCC
Q psy2441 42 EISHTTVLHCSASG-NPPP-KISWIREMLPVDTS 73 (212)
Q Consensus 42 ~~g~~v~l~C~~~~-~p~~-~v~W~k~g~~l~~~ 73 (212)
.+|+.++|.|.+.| +|.. .++|+|||..+...
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~ 45 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEG 45 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCC
Confidence 46889999999988 4554 68999999987653
No 315
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.18 E-value=0.0011 Score=40.18 Aligned_cols=69 Identities=13% Similarity=0.227 Sum_probs=40.9
Q ss_pred EecCCcEEEEEeeeeCC--C-CceEEEeCCEEecCCCCCceEEcCCCC---ceeEEEcCCCCCCCeeEEEEEEcccc
Q psy2441 124 VEISHTTVLHCSASGNP--P-PKISWIREMLPVDTSRNPRYNLLTSGA---PGALQITNSIEEDQGKYECVAENEVG 194 (212)
Q Consensus 124 ~~~g~~~~l~C~~~~~p--~-~~i~W~~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~a~n~~g 194 (212)
...++.+.|.|.+.+.. . ..+.|.+++.. ...... .....++. .+.|.+..-.......|+|.+.+...
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~-~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTS-AESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcC-cccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 44578899999998854 2 48899998865 211000 01111211 24555554444555689999987643
No 316
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.17 E-value=0.007 Score=37.57 Aligned_cols=71 Identities=14% Similarity=0.132 Sum_probs=45.5
Q ss_pred ceeEecCCcEEEEEeeeeCCC---CceEEEeCCE-EecC------------CCCCceEE--cCCCCceeEEEcCCCCCCC
Q psy2441 121 TKVVEISHTTVLHCSASGNPP---PKISWIREML-PVDT------------SRNPRYNL--LTSGAPGALQITNSIEEDQ 182 (212)
Q Consensus 121 ~~~~~~g~~~~l~C~~~~~p~---~~i~W~~~~~-~~~~------------~~~~~~~~--~~~~~~~~l~i~~~~~~d~ 182 (212)
...+..|+.+.|.|.+.+... -.+.|.|... .++- ....++.. ..+.....|.|.+++.+|.
T Consensus 7 ~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DT 86 (115)
T cd05721 7 PVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQT 86 (115)
T ss_pred CeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHC
Confidence 345677899999999977543 3677887321 1110 01223222 2223356899999999999
Q ss_pred eeEEEEEEc
Q psy2441 183 GKYECVAEN 191 (212)
Q Consensus 183 g~y~C~a~n 191 (212)
+.|.|....
T Consensus 87 a~Y~Ca~e~ 95 (115)
T cd05721 87 DIYFCKIEL 95 (115)
T ss_pred eEEEEEeee
Confidence 999996643
No 317
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.16 E-value=0.00056 Score=40.72 Aligned_cols=27 Identities=41% Similarity=0.885 Sum_probs=22.9
Q ss_pred CCeEEEEccc-CCCCCCcEEEEeCCEEe
Q psy2441 44 SHTTVLHCSA-SGNPPPKISWIREMLPV 70 (212)
Q Consensus 44 g~~v~l~C~~-~~~p~~~v~W~k~g~~l 70 (212)
|+.+.|.|.+ .++|++.|+|+.++..+
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~ 41 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPV 41 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEE
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCce
Confidence 6799999987 56899999999999877
No 318
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=97.13 E-value=0.0011 Score=39.92 Aligned_cols=32 Identities=22% Similarity=0.589 Sum_probs=27.0
Q ss_pred eeCCeEEEEcccCCC-CC-CcEEEEeCCEEecCC
Q psy2441 42 EISHTTVLHCSASGN-PP-PKISWIREMLPVDTS 73 (212)
Q Consensus 42 ~~g~~v~l~C~~~~~-p~-~~v~W~k~g~~l~~~ 73 (212)
..|+.+.|.|.+.|. |. ..|+|+++|..+...
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~ 44 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSG 44 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCc
Confidence 468999999999886 54 579999999998764
No 319
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.07 E-value=0.031 Score=42.54 Aligned_cols=69 Identities=16% Similarity=0.100 Sum_probs=45.6
Q ss_pred ceeeEEEeeccCCCcceeccc-ccCCCCCeEEeCCCccEEeeCCeEEEEcccCCC-CC--CcEEEEeCCEEecCC
Q psy2441 3 IGTYIKIKPNLFSPLSVYSAD-KIPPGFPQITEAPSTKVVEISHTTVLHCSASGN-PP--PKISWIREMLPVDTS 73 (212)
Q Consensus 3 ~g~Y~C~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p~--~~v~W~k~g~~l~~~ 73 (212)
+|.|+=...+..+........ +....+|.+.+.+ .-+.+|+...-.|.+..+ |+ ..+.||+||.++...
T Consensus 194 eGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~--~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~ 266 (466)
T PHA03270 194 QGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRP--HAVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAP 266 (466)
T ss_pred ceEEEEEEecCCCceeeeeEEEEEEecCCcccccC--CccccCCCceEEEEeeeecCCCceEEEEEeCCccccCc
Confidence 578887766655543322222 2226777765554 356799999999999765 43 259999999988653
No 320
>PHA03269 envelope glycoprotein C; Provisional
Probab=96.99 E-value=0.036 Score=42.84 Aligned_cols=44 Identities=18% Similarity=0.306 Sum_probs=33.1
Q ss_pred CCCCeEEeCCCccEEeeCCeEEEEcccCCC-CC--CcEEEEeCCEEecC
Q psy2441 27 PGFPQITEAPSTKVVEISHTTVLHCSASGN-PP--PKISWIREMLPVDT 72 (212)
Q Consensus 27 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p~--~~v~W~k~g~~l~~ 72 (212)
..+|.+.+.+ .-+.+|+...-.|.+..+ |+ ..+.||+||.++..
T Consensus 327 yr~PsVsV~p--~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~ 373 (566)
T PHA03269 327 YKRPNITVIG--DPVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGK 373 (566)
T ss_pred ecCCCccccC--CccccCCCceEEEEeeeecCCCceEEEEEeCCcccCc
Confidence 6677665443 356799999999999765 43 25999999988875
No 321
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=96.95 E-value=0.0071 Score=37.94 Aligned_cols=35 Identities=20% Similarity=0.415 Sum_probs=27.5
Q ss_pred EEeCCCccEEeeCCeEEEEcccCCC-CCCcEEEEeC
Q psy2441 32 ITEAPSTKVVEISHTTVLHCSASGN-PPPKISWIRE 66 (212)
Q Consensus 32 ~~~~~~~~~v~~g~~v~l~C~~~~~-p~~~v~W~k~ 66 (212)
+...+..+.+.+|++|+|.|..... ....+.|||.
T Consensus 2 v~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq 37 (116)
T cd07706 2 VTQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQ 37 (116)
T ss_pred cEEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEE
Confidence 3456778889999999999998643 4456999994
No 322
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.89 E-value=0.0059 Score=33.61 Aligned_cols=50 Identities=24% Similarity=0.395 Sum_probs=32.6
Q ss_pred eeCCeEEEEcccCCCCCCcEEEEeCCEEecCCCCCeeEEeec-CCCCeEEEeeeC
Q psy2441 42 EISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTS-GAPGTYIKIKPN 95 (212)
Q Consensus 42 ~~g~~v~l~C~~~~~p~~~v~W~k~g~~l~~~~~~~~~~~~~-~~~g~~l~i~~~ 95 (212)
..|..|+|+|...+. .+.|++++..+... ...+..... ++.|.|.|....
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~-~~~~~~~~~~e~~G~Y~C~~~~ 55 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGS-DEKYLSLNHFSSSGYYHCTADN 55 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccCCCC-CceEEeeccCCCCceEEEEeCC
Confidence 479999999997532 29999999666553 122222111 467888887654
No 323
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.85 E-value=0.0071 Score=36.67 Aligned_cols=27 Identities=19% Similarity=0.480 Sum_probs=22.0
Q ss_pred EEeeCCeEEEEcccCCC--CCCcEEEEeC
Q psy2441 40 VVEISHTTVLHCSASGN--PPPKISWIRE 66 (212)
Q Consensus 40 ~v~~g~~v~l~C~~~~~--p~~~v~W~k~ 66 (212)
++.+|++|+|.|...+. ....+.|||.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q 30 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQ 30 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEE
Confidence 57899999999998664 4556999985
No 324
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=96.83 E-value=0.0048 Score=37.38 Aligned_cols=46 Identities=26% Similarity=0.293 Sum_probs=35.0
Q ss_pred CceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEEEEe
Q psy2441 159 PRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206 (212)
Q Consensus 159 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v~ 206 (212)
.++.+...+ ..|.|+.+..+|+|.|.-++.+..|......+.+.|.
T Consensus 62 ~r~~F~~en--laLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 62 NRFNFTSEN--LALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp HHEEEETTT--TEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred ceEeeeccC--ceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence 456665554 8999999999999999999999999887655666553
No 325
>PHA02633 hypothetical protein; Provisional
Probab=96.82 E-value=0.0038 Score=33.75 Aligned_cols=36 Identities=25% Similarity=0.419 Sum_probs=28.1
Q ss_pred eeEEEcCCCCCCCeeEEEEEEcccccceecceEEEEe
Q psy2441 170 GALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206 (212)
Q Consensus 170 ~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v~ 206 (212)
..|.|-++..+|+|.|.|...|..-..... +.|.|.
T Consensus 18 ~nLwilpa~~sDSGiYiC~~rn~t~c~~~s-i~l~V~ 53 (63)
T PHA02633 18 NNMLILNPTQSDSGIYMCITKNETYSDMMK-FDLCIC 53 (63)
T ss_pred ccEEEeccccccCcEEEEEEcCCCeeEEEE-EEEEEe
Confidence 678999999999999999999875555544 555553
No 326
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.81 E-value=0.0061 Score=37.33 Aligned_cols=28 Identities=29% Similarity=0.498 Sum_probs=23.5
Q ss_pred EEeeCCeEEEEcccCCC-CCCcEEEEeCC
Q psy2441 40 VVEISHTTVLHCSASGN-PPPKISWIREM 67 (212)
Q Consensus 40 ~v~~g~~v~l~C~~~~~-p~~~v~W~k~g 67 (212)
.+.+|++++|.|.+.+. +...+.|||..
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~ 30 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQK 30 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEEC
Confidence 57899999999999765 56679999954
No 327
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=96.79 E-value=0.0066 Score=35.87 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=20.3
Q ss_pred CCeEEEEcccCCCC--CCcEEEEeCCEE
Q psy2441 44 SHTTVLHCSASGNP--PPKISWIREMLP 69 (212)
Q Consensus 44 g~~v~l~C~~~~~p--~~~v~W~k~g~~ 69 (212)
|+++.|.|.+.+.+ ...+.|.+.+..
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~ 28 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKK 28 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcc
Confidence 78999999997655 457899887653
No 328
>PHA03273 envelope glycoprotein C; Provisional
Probab=96.71 E-value=0.11 Score=40.03 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=43.8
Q ss_pred ceeeEEEeeccCCCcceecccccC--CCCCeEEeCCCccEEeeCCeEEEEcccCCC-CC--CcEEEEeCCEEecC
Q psy2441 3 IGTYIKIKPNLFSPLSVYSADKIP--PGFPQITEAPSTKVVEISHTTVLHCSASGN-PP--PKISWIREMLPVDT 72 (212)
Q Consensus 3 ~g~Y~C~~~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p~--~~v~W~k~g~~l~~ 72 (212)
+|.|+=+..+..+..... ..+.+ ..+|.+.+.+ .-+.+|+...-.|.+..+ |+ ..+.||+||.++..
T Consensus 210 eGvYtWr~~~~n~t~~~~-~~VtV~~yr~Psvsv~~--~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~ 281 (486)
T PHA03273 210 AGVYVWSLYAKNGTLVNS-TSVTVSTYNAPLVDLSV--HPSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDF 281 (486)
T ss_pred ceEEEEEEecCCCceeee-eEEEEEEecCCcccccC--CccccCCCceEEEEeeeecCCCceEEEEEeCCeeccc
Confidence 578875554544432222 22222 6777765544 356799999999999764 43 25999999999883
No 329
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=96.69 E-value=0.0051 Score=35.29 Aligned_cols=27 Identities=33% Similarity=0.705 Sum_probs=21.1
Q ss_pred eEEEEcccCCC-CC-CcEEEEeCCEEecC
Q psy2441 46 TTVLHCSASGN-PP-PKISWIREMLPVDT 72 (212)
Q Consensus 46 ~v~l~C~~~~~-p~-~~v~W~k~g~~l~~ 72 (212)
.++|.|.+.+. |. ..++|+|||.++..
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~ 29 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTS 29 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCC
Confidence 36899999884 55 57999999987543
No 330
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.69 E-value=0.0047 Score=37.80 Aligned_cols=37 Identities=22% Similarity=0.627 Sum_probs=27.6
Q ss_pred CCccEEeeCCeEEEEcccCC-CCCC-cEEEEeCCEEecC
Q psy2441 36 PSTKVVEISHTTVLHCSASG-NPPP-KISWIREMLPVDT 72 (212)
Q Consensus 36 ~~~~~v~~g~~v~l~C~~~~-~p~~-~v~W~k~g~~l~~ 72 (212)
|....+..|..++|.|.+.| +|.. .++|+|||.++..
T Consensus 8 p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~ 46 (102)
T cd05768 8 PPSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSK 46 (102)
T ss_pred cChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCc
Confidence 33344456789999999988 4543 5899999998764
No 331
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=96.62 E-value=0.0071 Score=36.53 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=27.3
Q ss_pred CCccEEeeCCeEEEEcccCC-CCCC-cEEEEeCCEEecC
Q psy2441 36 PSTKVVEISHTTVLHCSASG-NPPP-KISWIREMLPVDT 72 (212)
Q Consensus 36 ~~~~~v~~g~~v~l~C~~~~-~p~~-~v~W~k~g~~l~~ 72 (212)
|....+..+..++|.|.+.+ +|.. .++|.|||..+..
T Consensus 8 ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~ 46 (96)
T cd07697 8 PSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSIL 46 (96)
T ss_pred CCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcC
Confidence 33344445678999999988 4543 6899999998754
No 332
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.61 E-value=0.031 Score=33.66 Aligned_cols=69 Identities=14% Similarity=0.177 Sum_probs=40.1
Q ss_pred EecCCcEEEEEeeee-CCC--CceEEEeCCEEecCCCC-CceEE-cCCCCceeEEEcCCCCCCCe-eEEEEEEccc
Q psy2441 124 VEISHTTVLHCSASG-NPP--PKISWIREMLPVDTSRN-PRYNL-LTSGAPGALQITNSIEEDQG-KYECVAENEV 193 (212)
Q Consensus 124 ~~~g~~~~l~C~~~~-~p~--~~i~W~~~~~~~~~~~~-~~~~~-~~~~~~~~l~i~~~~~~d~g-~y~C~a~n~~ 193 (212)
+.+|+.+++.|.+.+ .|. ..+.|+++...+..... ..... ........+++.. +++|.| .|.|.|.-..
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~l 86 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLHI 86 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEee
Confidence 367999999999965 444 47889987765543210 00000 0001114455554 466665 9999986443
No 333
>PHA03271 envelope glycoprotein C; Provisional
Probab=96.41 E-value=0.19 Score=38.35 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=33.0
Q ss_pred CCCCeEEeCCCccEEeeCCeEEEEcccCCC-CC--CcEEEEeCCEEecCC
Q psy2441 27 PGFPQITEAPSTKVVEISHTTVLHCSASGN-PP--PKISWIREMLPVDTS 73 (212)
Q Consensus 27 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p~--~~v~W~k~g~~l~~~ 73 (212)
..+|.+.+.+. -+.+|+...-.|.+..+ |+ ..+.||+||.+....
T Consensus 245 ~RPPsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~ 292 (490)
T PHA03271 245 QRPASVDVLAP--PVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPR 292 (490)
T ss_pred ecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCccccCc
Confidence 56666655443 46789999999999765 43 259999999887654
No 334
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=96.39 E-value=0.012 Score=35.38 Aligned_cols=38 Identities=24% Similarity=0.306 Sum_probs=26.7
Q ss_pred CCCccEEeeCCeEEEEcccCC-CCC-CcEEEEeCCEEecC
Q psy2441 35 APSTKVVEISHTTVLHCSASG-NPP-PKISWIREMLPVDT 72 (212)
Q Consensus 35 ~~~~~~v~~g~~v~l~C~~~~-~p~-~~v~W~k~g~~l~~ 72 (212)
.|.......+..+.|.|.+.| +|. ..|+|+|||..+..
T Consensus 5 ~ps~~~~~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~ 44 (94)
T cd05847 5 HSSCCDTGTSETIQLLCLISGYTPGTIEVEWLVDGQVATL 44 (94)
T ss_pred CcChHHcCCCCCEEEEEEEEeEECCCCEEEEEECCEECcC
Confidence 333333335567999999988 454 46999999988743
No 335
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=96.35 E-value=0.016 Score=35.64 Aligned_cols=33 Identities=9% Similarity=0.048 Sum_probs=25.1
Q ss_pred eCCCccEEeeCCeEEEEcccCCCCCCcEEEEeC
Q psy2441 34 EAPSTKVVEISHTTVLHCSASGNPPPKISWIRE 66 (212)
Q Consensus 34 ~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~ 66 (212)
+.+.+..+.+|+++.|.|.........++|||+
T Consensus 3 ie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg 35 (105)
T cd05774 3 IELVPPQVAEGENVLLLVHNLPENLLAYAWYKG 35 (105)
T ss_pred EeccCCcccCCCCEEEEecCCCCCceEEEEEcC
Confidence 345556688999999999875444458999996
No 336
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=96.34 E-value=0.082 Score=33.21 Aligned_cols=31 Identities=13% Similarity=0.203 Sum_probs=23.7
Q ss_pred CCCccEEeeCCeEEEEcccCCC----CCCcEEEEe
Q psy2441 35 APSTKVVEISHTTVLHCSASGN----PPPKISWIR 65 (212)
Q Consensus 35 ~~~~~~v~~g~~v~l~C~~~~~----p~~~v~W~k 65 (212)
.+..+.+..|+.+.|.|..... +...|.|.+
T Consensus 4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~ 38 (116)
T cd05879 4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHY 38 (116)
T ss_pred ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEE
Confidence 4556788899999999998543 335799955
No 337
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.31 E-value=0.01 Score=35.83 Aligned_cols=35 Identities=23% Similarity=0.473 Sum_probs=25.9
Q ss_pred CCCccEEeeCCeEEEEcccCCC--CC-CcEEEEeCCEE
Q psy2441 35 APSTKVVEISHTTVLHCSASGN--PP-PKISWIREMLP 69 (212)
Q Consensus 35 ~~~~~~v~~g~~v~l~C~~~~~--p~-~~v~W~k~g~~ 69 (212)
.|....+..|+.++|.|.+.|. |. ..|+|+|+|..
T Consensus 5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~ 42 (96)
T cd07696 5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGE 42 (96)
T ss_pred CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeE
Confidence 4444556678999999999876 44 36899998743
No 338
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=96.27 E-value=0.041 Score=33.23 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=22.8
Q ss_pred cEEeeCCeEEEEcccCC-CCCCcEEEEeCC
Q psy2441 39 KVVEISHTTVLHCSASG-NPPPKISWIREM 67 (212)
Q Consensus 39 ~~v~~g~~v~l~C~~~~-~p~~~v~W~k~g 67 (212)
+.+.+|++++|.|.... .....+.|||..
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~ 31 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWG 31 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCC
Confidence 46789999999999864 345578999964
No 339
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=96.25 E-value=0.036 Score=37.45 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=24.5
Q ss_pred ccEEeeCCeEEEEcccC-CCCCCcEEEEeCC
Q psy2441 38 TKVVEISHTTVLHCSAS-GNPPPKISWIREM 67 (212)
Q Consensus 38 ~~~v~~g~~v~l~C~~~-~~p~~~v~W~k~g 67 (212)
.++|.+|++|.|.|... +...+.+.|+|..
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~ 54 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNN 54 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcC
Confidence 46789999999999984 5556789999963
No 340
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=96.23 E-value=0.056 Score=33.97 Aligned_cols=32 Identities=25% Similarity=0.534 Sum_probs=24.4
Q ss_pred CCCccEEeeCCeEEEEcccCCCC--CCcEEEEeC
Q psy2441 35 APSTKVVEISHTTVLHCSASGNP--PPKISWIRE 66 (212)
Q Consensus 35 ~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~k~ 66 (212)
.|....+.+|++++|.|...... ...+.|||-
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ 36 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQ 36 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEE
Confidence 35677899999999999875432 345899994
No 341
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.20 E-value=0.0081 Score=38.16 Aligned_cols=79 Identities=14% Similarity=0.177 Sum_probs=40.7
Q ss_pred cCCcEEEEEeeeeC-----CCCceEEEeCCEEecCCC--CCce--------EE-cCCCCceeEEEcCCCCCCCeeEEEEE
Q psy2441 126 ISHTTVLHCSASGN-----PPPKISWIREMLPVDTSR--NPRY--------NL-LTSGAPGALQITNSIEEDQGKYECVA 189 (212)
Q Consensus 126 ~g~~~~l~C~~~~~-----p~~~i~W~~~~~~~~~~~--~~~~--------~~-~~~~~~~~l~i~~~~~~d~g~y~C~a 189 (212)
=++.+.|.|.+... +.-.+.|.+++..+..-+ ..+. .+ ....+..+|.+.....- .|.|+|.+
T Consensus 26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeV 104 (130)
T PF08204_consen 26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEV 104 (130)
T ss_dssp T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEE
T ss_pred cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEE
Confidence 37789999998542 223688999887664320 1111 11 00012355777653322 89999999
Q ss_pred EcccccceecceEEEEe
Q psy2441 190 ENEVGTEYSPSTMLYVK 206 (212)
Q Consensus 190 ~n~~g~~~~~~~~l~v~ 206 (212)
.......... +.|..+
T Consensus 105 t~~~~ege~~-i~Lk~~ 120 (130)
T PF08204_consen 105 TELSREGETT-IELKYR 120 (130)
T ss_dssp EETTEEEEEE-EEEEE-
T ss_pred EecCCCceEE-EEEEEE
Confidence 8766655544 555543
No 342
>KOG4597|consensus
Probab=96.10 E-value=0.01 Score=45.52 Aligned_cols=81 Identities=17% Similarity=0.086 Sum_probs=59.7
Q ss_pred eeEecCCcEEEEEeeeeCCCCceEEEe---CCEEecCC---CCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEccccc
Q psy2441 122 KVVEISHTTVLHCSASGNPPPKISWIR---EMLPVDTS---RNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGT 195 (212)
Q Consensus 122 ~~~~~g~~~~l~C~~~~~p~~~i~W~~---~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~ 195 (212)
..+..++...++|.+.|.+.+.++|.+ |+..+-.. ...+..... ...|.|-+....|.|-|+|.+.|..|-
T Consensus 206 w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vts---tcql~ic~ewq~~a~w~tCs~rcg~g~ 282 (560)
T KOG4597|consen 206 WFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTS---TCQLVICNEWQADAGWYTCSARCGAGF 282 (560)
T ss_pred hhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceee---eeeEEEcchhhcCCCceeeccccccce
Confidence 446678999999999999999999975 33322211 111111222 278999999999999999999999999
Q ss_pred ceecceEEEEe
Q psy2441 196 EYSPSTMLYVK 206 (212)
Q Consensus 196 ~~~~~~~l~v~ 206 (212)
.+++ +.+.+.
T Consensus 283 ~~rd-v~c~s~ 292 (560)
T KOG4597|consen 283 LRRD-VPCSSV 292 (560)
T ss_pred eecc-ceeeee
Confidence 9888 766653
No 343
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=96.07 E-value=0.052 Score=34.20 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=24.9
Q ss_pred eCCCccEEeeCCeEEEEcccCCCC------CCcEEEEeCC
Q psy2441 34 EAPSTKVVEISHTTVLHCSASGNP------PPKISWIREM 67 (212)
Q Consensus 34 ~~~~~~~v~~g~~v~l~C~~~~~p------~~~v~W~k~g 67 (212)
..|..+.+.+|+.|+|.|...... ...+.|||..
T Consensus 4 q~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~ 43 (119)
T cd05712 4 WMPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGH 43 (119)
T ss_pred cCCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCC
Confidence 346678899999999999864221 2458999964
No 344
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=96.05 E-value=0.024 Score=33.19 Aligned_cols=31 Identities=23% Similarity=0.572 Sum_probs=25.3
Q ss_pred eCCeEEEEcccCC-CCCC-cEEEEeCCEEecCC
Q psy2441 43 ISHTTVLHCSASG-NPPP-KISWIREMLPVDTS 73 (212)
Q Consensus 43 ~g~~v~l~C~~~~-~p~~-~v~W~k~g~~l~~~ 73 (212)
.+..+.|.|.+.+ +|.. .|.|+++|..+...
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~ 39 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEG 39 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTT
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeee
Confidence 3889999999987 4544 69999999988764
No 345
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=95.93 E-value=0.041 Score=39.14 Aligned_cols=48 Identities=25% Similarity=0.423 Sum_probs=36.9
Q ss_pred CCceEEEeC-CEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEccc
Q psy2441 141 PPKISWIRE-MLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEV 193 (212)
Q Consensus 141 ~~~i~W~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~ 193 (212)
.|.+.|... +..+.. ..++.+... +.|.+.+....++|.|+|......
T Consensus 12 DP~y~W~GP~g~~l~g--n~~~nIT~T---G~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 12 DPTYLWTGPNGKPLSG--NSYVNITET---GKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCceEEECCCCcccCC--CCeEEEccC---ceEEeeccccccCCceEEEEEEEe
Confidence 578999875 444444 356666666 789999999999999999997643
No 346
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=95.71 E-value=0.084 Score=31.87 Aligned_cols=23 Identities=13% Similarity=0.375 Sum_probs=17.1
Q ss_pred CCeEEEEcccCCCCC-CcEEEEeC
Q psy2441 44 SHTTVLHCSASGNPP-PKISWIRE 66 (212)
Q Consensus 44 g~~v~l~C~~~~~p~-~~v~W~k~ 66 (212)
|++|+|.|....... ..|.|+|.
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~ 24 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKI 24 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEc
Confidence 789999998754332 36999985
No 347
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.61 E-value=0.023 Score=34.23 Aligned_cols=27 Identities=26% Similarity=0.446 Sum_probs=21.9
Q ss_pred eCCeEEEEcccCCC-CC-CcEEEEeCCEE
Q psy2441 43 ISHTTVLHCSASGN-PP-PKISWIREMLP 69 (212)
Q Consensus 43 ~g~~v~l~C~~~~~-p~-~~v~W~k~g~~ 69 (212)
.++.++|.|.+.+. |. ..|+|+|||..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~ 43 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS 43 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence 46679999999884 54 36899999988
No 348
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=95.49 E-value=0.13 Score=32.03 Aligned_cols=24 Identities=17% Similarity=0.447 Sum_probs=18.3
Q ss_pred eCCeEEEEcccCCCC------------CCcEEEEeC
Q psy2441 43 ISHTTVLHCSASGNP------------PPKISWIRE 66 (212)
Q Consensus 43 ~g~~v~l~C~~~~~p------------~~~v~W~k~ 66 (212)
.|++|+|.|...... .+.|.|+|.
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~ 36 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFI 36 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEe
Confidence 489999999985432 357999984
No 349
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=95.43 E-value=0.096 Score=29.17 Aligned_cols=56 Identities=21% Similarity=0.330 Sum_probs=32.9
Q ss_pred CCeEEEEcccCCCCCCcEEEEeCCEEecCCCCCeeEEeec--CCCCeEEEeeeC--CccceeEEe
Q psy2441 44 SHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTS--GAPGTYIKIKPN--LFSPLSVYS 104 (212)
Q Consensus 44 g~~v~l~C~~~~~p~~~v~W~k~g~~l~~~~~~~~~~~~~--~~~g~~l~i~~~--~~~~~~v~~ 104 (212)
.+.|.|.|.+. .+|+|++ |..+....+..+.+... |-.|.|.|-... ....+.|+.
T Consensus 6 ~~~V~L~C~~~----tsi~W~k-G~~~~~~~~~tlnLGs~~~DPRG~Y~C~~s~~~~~~~LQVyY 65 (69)
T cd07691 6 EGKVFLKCNGA----TNITWKK-GKEILEVSNTLLDLGSRINDPRGTYSCKESEPNKEKTLQVYY 65 (69)
T ss_pred CceEEEEecCC----CcEEEec-CcccccccccEEeccCcccCCCcceEecCccCCCcEEEEEEE
Confidence 35899999762 4599999 65554442333333332 456777776544 334555543
No 350
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=95.38 E-value=0.033 Score=33.64 Aligned_cols=30 Identities=23% Similarity=0.633 Sum_probs=24.2
Q ss_pred ccEEeeCCeEEE-Eccc-CCCCCCcEEEEeCC
Q psy2441 38 TKVVEISHTTVL-HCSA-SGNPPPKISWIREM 67 (212)
Q Consensus 38 ~~~v~~g~~v~l-~C~~-~~~p~~~v~W~k~g 67 (212)
...+.+|..+.+ .|.+ .|.|++.|+|+.+.
T Consensus 10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~ 41 (97)
T cd07704 10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNV 41 (97)
T ss_pred eeEeecCcceeEEEEEccCCccCCEeEEeCCC
Confidence 345678888888 8887 67899999999763
No 351
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=95.36 E-value=0.13 Score=31.51 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=19.2
Q ss_pred eCCeEEEEcccCCCC------CCcEEEEeCC
Q psy2441 43 ISHTTVLHCSASGNP------PPKISWIREM 67 (212)
Q Consensus 43 ~g~~v~l~C~~~~~p------~~~v~W~k~g 67 (212)
.|++|+|.|.....| ...|.|||..
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~ 31 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLE 31 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEec
Confidence 489999999986542 3469999964
No 352
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=95.02 E-value=0.029 Score=34.64 Aligned_cols=35 Identities=29% Similarity=0.562 Sum_probs=28.1
Q ss_pred EEeCCCccEEeeCCeEEEEcccC-CCCCCcEEEEeC
Q psy2441 32 ITEAPSTKVVEISHTTVLHCSAS-GNPPPKISWIRE 66 (212)
Q Consensus 32 ~~~~~~~~~v~~g~~v~l~C~~~-~~p~~~v~W~k~ 66 (212)
+...+..+.+.+|+++.|.|... ......+.|++.
T Consensus 4 vt~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~ 39 (114)
T PF07686_consen 4 VTQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQ 39 (114)
T ss_dssp EEEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEE
T ss_pred EEEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEE
Confidence 34456778899999999999998 445567999994
No 353
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=94.99 E-value=0.033 Score=33.60 Aligned_cols=22 Identities=41% Similarity=0.851 Sum_probs=18.8
Q ss_pred CeEEEEccc-CCCCCCcEEEEeC
Q psy2441 45 HTTVLHCSA-SGNPPPKISWIRE 66 (212)
Q Consensus 45 ~~v~l~C~~-~~~p~~~v~W~k~ 66 (212)
....+.|.+ .|+|.+.|+|+++
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~ 38 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETT 38 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeC
Confidence 466789998 6789999999997
No 354
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=94.86 E-value=0.13 Score=31.15 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=20.8
Q ss_pred eeCCeEEEEcccCC-CCCCcEEEEeCC
Q psy2441 42 EISHTTVLHCSASG-NPPPKISWIREM 67 (212)
Q Consensus 42 ~~g~~v~l~C~~~~-~p~~~v~W~k~g 67 (212)
.+|++|+|.|.... .....+.|+|..
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~ 28 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNT 28 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCC
Confidence 36999999999865 445679999975
No 355
>PHA03042 CD47-like protein; Provisional
Probab=94.82 E-value=0.28 Score=35.25 Aligned_cols=62 Identities=19% Similarity=0.261 Sum_probs=39.8
Q ss_pred CCcEEEEEeeeeC-----CCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccce
Q psy2441 127 SHTTVLHCSASGN-----PPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEY 197 (212)
Q Consensus 127 g~~~~l~C~~~~~-----p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~ 197 (212)
.+.+.+.|.+... ..-++.|..++..+-..+.. +. ++|.+.. ...-.|.|+|+|.+...+..
T Consensus 31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t------n~--aSL~~~f-~~~l~GNYTCEv~~l~n~gk 97 (286)
T PHA03042 31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT------NT--SSLKFNF-SKNLSGNYTCEAINKFNKIK 97 (286)
T ss_pred CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC------cc--eEEEEec-cccCCCceeEEEeecccCcc
Confidence 6788999998442 34579999998776543111 11 4555543 23338999999987654443
No 356
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=94.77 E-value=0.042 Score=33.92 Aligned_cols=27 Identities=33% Similarity=0.641 Sum_probs=21.6
Q ss_pred EEeeCCeEEEEcccCCC-CCCcEEEEeC
Q psy2441 40 VVEISHTTVLHCSASGN-PPPKISWIRE 66 (212)
Q Consensus 40 ~v~~g~~v~l~C~~~~~-p~~~v~W~k~ 66 (212)
.+.+|++++|.|...+. ....+.|||.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq 29 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRW 29 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEE
Confidence 57899999999998653 3446999995
No 357
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=94.68 E-value=0.038 Score=33.90 Aligned_cols=28 Identities=21% Similarity=0.479 Sum_probs=22.2
Q ss_pred EEeeCCeEEEEcccCCCCCCcEEEEeCC
Q psy2441 40 VVEISHTTVLHCSASGNPPPKISWIREM 67 (212)
Q Consensus 40 ~v~~g~~v~l~C~~~~~p~~~v~W~k~g 67 (212)
.+.+|++|+|.|.........+.|||..
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~ 29 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQP 29 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeC
Confidence 4678999999999865545569999964
No 358
>PHA02982 hypothetical protein; Provisional
Probab=94.63 E-value=0.27 Score=33.89 Aligned_cols=75 Identities=16% Similarity=0.381 Sum_probs=48.2
Q ss_pred EecCCcEEEEEeeee-CCCCceEEEeCC-EEecCC----------------CCCceEEcCCCCceeEEEcCCCCCCCeeE
Q psy2441 124 VEISHTTVLHCSASG-NPPPKISWIREM-LPVDTS----------------RNPRYNLLTSGAPGALQITNSIEEDQGKY 185 (212)
Q Consensus 124 ~~~g~~~~l~C~~~~-~p~~~i~W~~~~-~~~~~~----------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 185 (212)
...++++.|.|.... .-..+..|+... ..+... .+..+..+-++..++|+|+++..+..|-|
T Consensus 36 a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~GCY 115 (251)
T PHA02982 36 ATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLGCF 115 (251)
T ss_pred ccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCCce
Confidence 445899999999533 223477788643 222210 11223333344468999999999999999
Q ss_pred EEEEEccccccee
Q psy2441 186 ECVAENEVGTEYS 198 (212)
Q Consensus 186 ~C~a~n~~g~~~~ 198 (212)
+|.+....+..+.
T Consensus 116 tc~~ks~~~k~E~ 128 (251)
T PHA02982 116 TCEAKDAEGKEET 128 (251)
T ss_pred EEEEecCCCchhe
Confidence 9999876554433
No 359
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=94.54 E-value=0.2 Score=30.07 Aligned_cols=23 Identities=17% Similarity=0.465 Sum_probs=17.4
Q ss_pred CeEEEEcccCCCC---CCcEEEEeCC
Q psy2441 45 HTTVLHCSASGNP---PPKISWIREM 67 (212)
Q Consensus 45 ~~v~l~C~~~~~p---~~~v~W~k~g 67 (212)
++|+|.|.....+ ...|.|+|..
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~ 26 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKIT 26 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeEC
Confidence 4789999986543 3469999965
No 360
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=94.49 E-value=0.067 Score=33.54 Aligned_cols=32 Identities=16% Similarity=0.307 Sum_probs=24.2
Q ss_pred CCCccEEeeCCeEEEEcccCCCC----CCcEEEEeC
Q psy2441 35 APSTKVVEISHTTVLHCSASGNP----PPKISWIRE 66 (212)
Q Consensus 35 ~~~~~~v~~g~~v~l~C~~~~~p----~~~v~W~k~ 66 (212)
.|..+.+.+|++++|.|...... ...+.||+.
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~ 39 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQ 39 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEe
Confidence 35677889999999999885432 245999984
No 361
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=94.45 E-value=0.28 Score=30.07 Aligned_cols=25 Identities=24% Similarity=0.566 Sum_probs=19.6
Q ss_pred eCCeEEEEcccCCCC------CCcEEEEeCC
Q psy2441 43 ISHTTVLHCSASGNP------PPKISWIREM 67 (212)
Q Consensus 43 ~g~~v~l~C~~~~~p------~~~v~W~k~g 67 (212)
.|++|+|.|.....+ ...|.|+|..
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~ 31 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLE 31 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeC
Confidence 489999999986543 4579999974
No 362
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=94.34 E-value=0.06 Score=32.67 Aligned_cols=41 Identities=20% Similarity=0.455 Sum_probs=29.2
Q ss_pred CCeEE-eCCCccEEeeCCeEEEEcccCC-C-CC-CcEEEEeCCEE
Q psy2441 29 FPQIT-EAPSTKVVEISHTTVLHCSASG-N-PP-PKISWIREMLP 69 (212)
Q Consensus 29 ~p~~~-~~~~~~~v~~g~~v~l~C~~~~-~-p~-~~v~W~k~g~~ 69 (212)
.|.+. ..|.......+..++|.|.+.+ + |. ..|+|.++|..
T Consensus 3 ~PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~ 47 (99)
T cd04986 3 KPSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK 47 (99)
T ss_pred CCEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence 45554 3344455557889999999987 3 43 46999999876
No 363
>PHA03052 Hypothetical protein; Provisional
Probab=94.10 E-value=0.22 Score=27.49 Aligned_cols=36 Identities=14% Similarity=0.364 Sum_probs=27.8
Q ss_pred CCccEEeeCCeEEEEccc-CC--CCCCcEEEEeCCEEec
Q psy2441 36 PSTKVVEISHTTVLHCSA-SG--NPPPKISWIREMLPVD 71 (212)
Q Consensus 36 ~~~~~v~~g~~v~l~C~~-~~--~p~~~v~W~k~g~~l~ 71 (212)
|....+..|..++|.|.+ .+ ...+.|.|.-|+..+.
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e 42 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE 42 (69)
T ss_pred CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence 456678889999999998 33 3455689999998883
No 364
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=94.06 E-value=0.49 Score=29.34 Aligned_cols=24 Identities=29% Similarity=0.700 Sum_probs=18.5
Q ss_pred eCCeEEEEcccCCCC----------CCcEEEEeC
Q psy2441 43 ISHTTVLHCSASGNP----------PPKISWIRE 66 (212)
Q Consensus 43 ~g~~v~l~C~~~~~p----------~~~v~W~k~ 66 (212)
.|++|+|.|.....+ ...|.|||.
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~ 34 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKL 34 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEe
Confidence 389999999986533 256999995
No 365
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=94.01 E-value=0.058 Score=32.50 Aligned_cols=22 Identities=36% Similarity=0.874 Sum_probs=18.5
Q ss_pred CeEEEEccc-CCCCCCcEEEEeC
Q psy2441 45 HTTVLHCSA-SGNPPPKISWIRE 66 (212)
Q Consensus 45 ~~v~l~C~~-~~~p~~~v~W~k~ 66 (212)
..+.+.|.+ .+.|.+.|+|+++
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~ 38 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSST 38 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcC
Confidence 356889987 5789999999998
No 366
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=94.00 E-value=0.066 Score=31.79 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=20.8
Q ss_pred CCeEEEEcccCCCCCCcEEEEeCCE
Q psy2441 44 SHTTVLHCSASGNPPPKISWIREML 68 (212)
Q Consensus 44 g~~v~l~C~~~~~p~~~v~W~k~g~ 68 (212)
|++|+|.|.....+...|.|+|+..
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~ 25 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKD 25 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCC
Confidence 7899999998766666899999763
No 367
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=93.93 E-value=0.077 Score=33.25 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=23.5
Q ss_pred CCCccEEeeCCeEEEEcccCCCC----CCcEEEEe
Q psy2441 35 APSTKVVEISHTTVLHCSASGNP----PPKISWIR 65 (212)
Q Consensus 35 ~~~~~~v~~g~~v~l~C~~~~~p----~~~v~W~k 65 (212)
.+..+.+.+|+.++|.|.....+ ...|.||+
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~ 38 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNF 38 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEE
Confidence 35677899999999999975432 23599986
No 368
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=93.52 E-value=0.12 Score=31.24 Aligned_cols=32 Identities=13% Similarity=0.262 Sum_probs=25.0
Q ss_pred EeeCCeEEEEcccCC-CCC--CcEEEEeCCEEecC
Q psy2441 41 VEISHTTVLHCSASG-NPP--PKISWIREMLPVDT 72 (212)
Q Consensus 41 v~~g~~v~l~C~~~~-~p~--~~v~W~k~g~~l~~ 72 (212)
+.+|..+++.|.+.+ +|. ..+.|+|+...+..
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~ 46 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPS 46 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecc
Confidence 478999999999954 555 57999997766654
No 369
>PHA03052 Hypothetical protein; Provisional
Probab=92.90 E-value=0.72 Score=25.52 Aligned_cols=37 Identities=16% Similarity=0.353 Sum_probs=27.9
Q ss_pred cceeEecCCcEEEEEeeee-CC--CCceEEEeCCEEecCC
Q psy2441 120 STKVVEISHTTVLHCSASG-NP--PPKISWIREMLPVDTS 156 (212)
Q Consensus 120 ~~~~~~~g~~~~l~C~~~~-~p--~~~i~W~~~~~~~~~~ 156 (212)
....+..|..+.|.|.+.- .+ .+.+.|.-|+...+..
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~~ 44 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEED 44 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEecc
Confidence 4566788999999999943 22 3578899999888443
No 370
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=92.88 E-value=1.2 Score=26.48 Aligned_cols=65 Identities=14% Similarity=0.290 Sum_probs=40.0
Q ss_pred ceeEecCCcEEEEEeeeeC-----CCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEE
Q psy2441 121 TKVVEISHTTVLHCSASGN-----PPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVA 189 (212)
Q Consensus 121 ~~~~~~g~~~~l~C~~~~~-----p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a 189 (212)
...+..|+.+...|..... ....|.|..++..++. .++....+. .+.+++.+......-.|-|..
T Consensus 12 ~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~---~qy~~in~~-~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 12 SPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPG---SQYRVINDT-VSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp SSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTC---GCEEEESTT-EEEEEESS--SSEEEEEEEEE
T ss_pred CCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECCh---hHcceeCCe-EEEEEEccCCCCCceEEEEEE
Confidence 3457789999999988432 3458999999886665 344444442 256777776655555566653
No 371
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=92.22 E-value=1.4 Score=25.61 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=19.6
Q ss_pred eeEEEcCCCCCCCeeEEEEE-Ecccccc
Q psy2441 170 GALQITNSIEEDQGKYECVA-ENEVGTE 196 (212)
Q Consensus 170 ~~l~i~~~~~~d~g~y~C~a-~n~~g~~ 196 (212)
..........+|+|.+.|.| .+..-..
T Consensus 43 ~~~~~~~~~~~d~G~w~C~a~~~~~k~~ 70 (80)
T PF05790_consen 43 KLVSTFTPTTEDSGTWVCTASDNEPKER 70 (80)
T ss_dssp SEEEEESBTCGGSEEEEEEEEECTTEEE
T ss_pred eEEEEecCCCCCCEEEEEEEcCCceEEE
Confidence 45566677889999999999 5543333
No 372
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=92.15 E-value=1.5 Score=26.01 Aligned_cols=46 Identities=17% Similarity=0.387 Sum_probs=31.6
Q ss_pred eCCCccEEeeCCeEEEEcccCCC-----CCCcEEEEeCCEEecCCCCCeeEEee
Q psy2441 34 EAPSTKVVEISHTTVLHCSASGN-----PPPKISWIREMLPVDTSRNPRYNLLT 82 (212)
Q Consensus 34 ~~~~~~~v~~g~~v~l~C~~~~~-----p~~~v~W~k~g~~l~~~~~~~~~~~~ 82 (212)
+.|....+..|.+++..|.+... ....|.|..++..+.. .+.+...
T Consensus 8 i~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~---~qy~~in 58 (89)
T PF06328_consen 8 ISPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPG---SQYRVIN 58 (89)
T ss_dssp EECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTC---GCEEEES
T ss_pred EecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECCh---hHcceeC
Confidence 34556678899999999998422 4457999999986665 4555543
No 373
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=92.07 E-value=0.23 Score=26.83 Aligned_cols=26 Identities=42% Similarity=0.986 Sum_probs=20.9
Q ss_pred EEEEcccCCCCCCcEEEEeCCEEecC
Q psy2441 47 TVLHCSASGNPPPKISWIREMLPVDT 72 (212)
Q Consensus 47 v~l~C~~~~~p~~~v~W~k~g~~l~~ 72 (212)
+.|.|.+.+.+...+.|++++.....
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~ 26 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPS 26 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCC
Confidence 46899998877788999998876544
No 374
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=91.57 E-value=1.4 Score=33.18 Aligned_cols=21 Identities=24% Similarity=0.596 Sum_probs=17.1
Q ss_pred cEEEEEeeeeCCCC--ceEEEeC
Q psy2441 129 TTVLHCSASGNPPP--KISWIRE 149 (212)
Q Consensus 129 ~~~l~C~~~~~p~~--~i~W~~~ 149 (212)
.+.|.|.|.|.-+. .+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999996443 7789998
No 375
>KOG0613|consensus
Probab=91.15 E-value=0.75 Score=40.27 Aligned_cols=78 Identities=13% Similarity=-0.029 Sum_probs=56.8
Q ss_pred eeEecCCcEEEEEeeeeCCCCc-eEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceec
Q psy2441 122 KVVEISHTTVLHCSASGNPPPK-ISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSP 199 (212)
Q Consensus 122 ~~~~~g~~~~l~C~~~~~p~~~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~ 199 (212)
..++.+..+.+.|...+...|. +.|++++..........+..........+.+..+...+.+.|.|.|.|..|.....
T Consensus 344 v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~ 422 (1205)
T KOG0613|consen 344 VTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTI 422 (1205)
T ss_pred eccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCccccc
Confidence 4566777899999999998885 99999776554431122222222334678888899999999999999998877554
No 376
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=91.08 E-value=2.1 Score=25.35 Aligned_cols=58 Identities=19% Similarity=0.150 Sum_probs=34.4
Q ss_pred ccEEeeCCeEEEEcccCCCCC--CcEEEEeCCEE-ec--CCCCCeeEEeec--CCCCeEEEeeeC
Q psy2441 38 TKVVEISHTTVLHCSASGNPP--PKISWIREMLP-VD--TSRNPRYNLLTS--GAPGTYIKIKPN 95 (212)
Q Consensus 38 ~~~v~~g~~v~l~C~~~~~p~--~~v~W~k~g~~-l~--~~~~~~~~~~~~--~~~g~~l~i~~~ 95 (212)
+..+..|++++|+|.....+. +.|.|+.-+.. .. ......+.+... .|+|.-.|....
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~~~~ktL~~~qv~~qdSG~WtC~V~~ 72 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILNQDKKTLNLVQLGPNDSGTWDCIVSV 72 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccceeccCCccEEEeceeCcccCCEEEEEEEE
Confidence 346789999999999965444 48999975432 21 111223333332 266766666543
No 377
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=91.01 E-value=1.7 Score=26.29 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=15.5
Q ss_pred eEEEEcccCCCC---CCcEEEEeC
Q psy2441 46 TTVLHCSASGNP---PPKISWIRE 66 (212)
Q Consensus 46 ~v~l~C~~~~~p---~~~v~W~k~ 66 (212)
+|.|.|.....+ ...|.|+|.
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~ 25 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRE 25 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEc
Confidence 689999985433 347999994
No 378
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=89.30 E-value=3.8 Score=25.67 Aligned_cols=32 Identities=16% Similarity=0.126 Sum_probs=23.4
Q ss_pred CCCccEEeeCCeEEEEcccCCCCC---CcEEEEeC
Q psy2441 35 APSTKVVEISHTTVLHCSASGNPP---PKISWIRE 66 (212)
Q Consensus 35 ~~~~~~v~~g~~v~l~C~~~~~p~---~~v~W~k~ 66 (212)
.+....++.|..+.|.|.+++... -.+.|+|.
T Consensus 4 ~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq 38 (115)
T cd05721 4 QQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKG 38 (115)
T ss_pred ecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEe
Confidence 344556778899999999966432 45889985
No 379
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=88.11 E-value=0.6 Score=28.16 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=17.4
Q ss_pred CCeEEEEcccCCCC---CCcEEEEeCC
Q psy2441 44 SHTTVLHCSASGNP---PPKISWIREM 67 (212)
Q Consensus 44 g~~v~l~C~~~~~p---~~~v~W~k~g 67 (212)
|++|.|.|...... ...+.|+|..
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~ 27 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQ 27 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECC
Confidence 78999999985322 2368999864
No 380
>smart00406 IGv Immunoglobulin V-Type.
Probab=87.71 E-value=3.5 Score=23.27 Aligned_cols=22 Identities=36% Similarity=0.647 Sum_probs=16.0
Q ss_pred eEEEEcccCCCCC--CcEEEEeCC
Q psy2441 46 TTVLHCSASGNPP--PKISWIREM 67 (212)
Q Consensus 46 ~v~l~C~~~~~p~--~~v~W~k~g 67 (212)
.+.|.|.+..... ..+.|++..
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~ 24 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQP 24 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeC
Confidence 4789999865443 379999964
No 381
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=87.45 E-value=4.2 Score=25.25 Aligned_cols=23 Identities=30% Similarity=0.674 Sum_probs=16.7
Q ss_pred CCeEEEEcccCCCC-------CCcEEEEeC
Q psy2441 44 SHTTVLHCSASGNP-------PPKISWIRE 66 (212)
Q Consensus 44 g~~v~l~C~~~~~p-------~~~v~W~k~ 66 (212)
|+.++|.|...-.| .+.|.|+|.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~ 31 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKL 31 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEe
Confidence 78999999953221 367999984
No 382
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=86.60 E-value=4 Score=24.55 Aligned_cols=69 Identities=19% Similarity=0.317 Sum_probs=38.6
Q ss_pred EEEEEe-eeeCCCCceEEEe--CCEEe-c-C-CCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEE
Q psy2441 130 TVLHCS-ASGNPPPKISWIR--EMLPV-D-T-SRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTML 203 (212)
Q Consensus 130 ~~l~C~-~~~~p~~~i~W~~--~~~~~-~-~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l 203 (212)
+.-.|. +.|.|++.|.|.- +|..- . . ..+..+.. .+.+.+-.....|.-..+|.+....-+-... +.|
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV-----~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~-~~L 96 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTV-----ISRYRLVPSREAHKQKLTCIVNYRNDRFTDS-VTL 96 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEEE-----EEEEEEeECHHHcCCEeEEEEEecccccccc-EEe
Confidence 456798 5889999999974 23220 0 0 01111111 1344444455667779999998764444333 554
Q ss_pred E
Q psy2441 204 Y 204 (212)
Q Consensus 204 ~ 204 (212)
.
T Consensus 97 ~ 97 (98)
T cd05890 97 N 97 (98)
T ss_pred c
Confidence 4
No 383
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=86.16 E-value=5.1 Score=23.63 Aligned_cols=55 Identities=16% Similarity=0.222 Sum_probs=33.4
Q ss_pred cEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccce
Q psy2441 129 TTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEY 197 (212)
Q Consensus 129 ~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~ 197 (212)
...|...+.+. .+.+.|+.|+..+...... ..+.+. ....|.|.-.+....|...
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~----------~~~~~~---~~~~G~h~l~vvD~~G~~~ 85 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQPG----------HQLFWQ---PDRPGEHTLTVVDAQGRSA 85 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCCCC----------CeEEeC---CCCCeeEEEEEEcCCCCEE
Confidence 45566666555 4489999999998432111 222222 2346888888877766553
No 384
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=85.98 E-value=38 Score=33.53 Aligned_cols=186 Identities=11% Similarity=0.045 Sum_probs=88.6
Q ss_pred eeeE--EEeeccCCCcceecccccCCCCCeEEeCCCccEEeeCCeEEEEcccCCCCCCcEEEEeCCE-EecCCCCCeeEE
Q psy2441 4 GTYI--KIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREML-PVDTSRNPRYNL 80 (212)
Q Consensus 4 g~Y~--C~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~g~-~l~~~~~~~~~~ 80 (212)
|.|. -.+.|..+.........+......+.+......+..|+.|.|.-...+-....++|..++. ..... .-+..
T Consensus 1670 G~Y~VtL~aSN~vG~~t~s~~i~v~epi~~L~L~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~~s--~p~~t 1747 (2740)
T TIGR00864 1670 GPCDIFLQAANLLGQATADCTIDFLEPAGNLMLQASDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLETS--EPFMS 1747 (2740)
T ss_pred ceEEEEEEEeecccceeeEEEEEEEEEcCceEEeccCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcccC--CCceE
Confidence 4554 3456666665544333333323333444455566779999998776666677899986553 22111 11222
Q ss_pred eecCCCCeEEEeeeC----CccceeEEeecCCCCCCCccccCCc-c-eeEecCCcEEEEEeeeeCCCCceEEEeCCEEec
Q psy2441 81 LTSGAPGTYIKIKPN----LFSPLSVYSADKIPPGFPQITEAPS-T-KVVEISHTTVLHCSASGNPPPKISWIREMLPVD 154 (212)
Q Consensus 81 ~~~~~~g~~l~i~~~----~~~~~~v~~~~~~~~~~p~~~~~~~-~-~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~ 154 (212)
......|.|.....+ ......+...+..+..-..+..... . ..+..|..+.|.-.+..--.-.+.|..++....
T Consensus 1748 Htf~~~G~y~VtVta~N~vss~~~s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~ 1827 (2740)
T TIGR00864 1748 HSFPSAGLHLVTMKAFNELGSANASEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSK 1827 (2740)
T ss_pred EEccCCceEEEEEEEEccccccceeEEEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCcc
Confidence 223345555433322 2222222222211111112211111 1 123446666666554322223677776543211
Q ss_pred CCCCCceEEcCCCCceeEEEcCCCCCCCeeEEE--EEEcccccceecceEEEEecc
Q psy2441 155 TSRNPRYNLLTSGAPGALQITNSIEEDQGKYEC--VAENEVGTEYSPSTMLYVKGT 208 (212)
Q Consensus 155 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C--~a~n~~g~~~~~~~~l~v~~~ 208 (212)
.. .... .+..+.|.|.. .|.|..+..... ..+.|+++
T Consensus 1828 ~g-------------k~v~---~Tf~~aG~ytV~L~AsN~vs~~~~s-~~~~VQe~ 1866 (2740)
T TIGR00864 1828 MG-------------KHAC---MTFPDAGTFAIRLNASNAVSGKSAS-REFFAEEP 1866 (2740)
T ss_pred cc-------------ceeE---EecCCCeEEEEEEEEEcccCcceee-eeEEEEEe
Confidence 10 0111 34556777764 456888777665 66666654
No 385
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=85.97 E-value=5.7 Score=23.98 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=16.1
Q ss_pred CeEEEEcccCCC-CCCcEEEEeCC
Q psy2441 45 HTTVLHCSASGN-PPPKISWIREM 67 (212)
Q Consensus 45 ~~v~l~C~~~~~-p~~~v~W~k~g 67 (212)
+.++|.|..... ....|+|.|..
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~ 24 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHN 24 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcC
Confidence 468899998532 34568999853
No 386
>PHA03269 envelope glycoprotein C; Provisional
Probab=85.53 E-value=10 Score=30.16 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=43.4
Q ss_pred eEecCCcEEEEEeeeeCCCC---ceEEEeCCEEecCCC-CCceEEcCCCC---ceeEEEcCCCCCC--CeeEEEEEEccc
Q psy2441 123 VVEISHTTVLHCSASGNPPP---KISWIREMLPVDTSR-NPRYNLLTSGA---PGALQITNSIEED--QGKYECVAENEV 193 (212)
Q Consensus 123 ~~~~g~~~~l~C~~~~~p~~---~i~W~~~~~~~~~~~-~~~~~~~~~~~---~~~l~i~~~~~~d--~g~y~C~a~n~~ 193 (212)
.+.+|+...-.|.+..+.++ .+.|++|+.++.... ...+....++. .++|.+......| --...|.+....
T Consensus 338 PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~R 417 (566)
T PHA03269 338 PVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIR 417 (566)
T ss_pred ccccCCCceEEEEeeeecCCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEcc
Confidence 36679999999999776544 789999998887531 12222233332 3455553332222 336689987543
No 387
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=85.38 E-value=5.3 Score=30.80 Aligned_cols=71 Identities=15% Similarity=0.231 Sum_probs=46.7
Q ss_pred eeEecCCcEEEEEeeee---CCCCceEEEeCCEEecCC---------------CCCceEEcC------CCCceeEEEcCC
Q psy2441 122 KVVEISHTTVLHCSASG---NPPPKISWIREMLPVDTS---------------RNPRYNLLT------SGAPGALQITNS 177 (212)
Q Consensus 122 ~~~~~g~~~~l~C~~~~---~p~~~i~W~~~~~~~~~~---------------~~~~~~~~~------~~~~~~l~i~~~ 177 (212)
..+..|..+.|.|...- .....+.|...+.++.+- ....+.+.. +-..++|+|+.+
T Consensus 274 ~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka 353 (500)
T PHA02914 274 VMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKA 353 (500)
T ss_pred eEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeE
Confidence 45667999999998854 233578898655433211 111222211 112589999999
Q ss_pred CCCCCeeEEEEEEcc
Q psy2441 178 IEEDQGKYECVAENE 192 (212)
Q Consensus 178 ~~~d~g~y~C~a~n~ 192 (212)
.-+..|-|.|.|...
T Consensus 354 ~I~N~GCY~~~a~~g 368 (500)
T PHA02914 354 HINNAGCYEAQAFMG 368 (500)
T ss_pred EEEcCCceEEEEecC
Confidence 999999999999764
No 388
>PHA03270 envelope glycoprotein C; Provisional
Probab=84.97 E-value=17 Score=28.53 Aligned_cols=71 Identities=14% Similarity=0.098 Sum_probs=42.6
Q ss_pred EecCCcEEEEEeeeeCCCC---ceEEEeCCEEecCC--CCCceEEcCCCC--ceeEEEcCCCCCC-CeeEEEEEEcccc
Q psy2441 124 VEISHTTVLHCSASGNPPP---KISWIREMLPVDTS--RNPRYNLLTSGA--PGALQITNSIEED-QGKYECVAENEVG 194 (212)
Q Consensus 124 ~~~g~~~~l~C~~~~~p~~---~i~W~~~~~~~~~~--~~~~~~~~~~~~--~~~l~i~~~~~~d-~g~y~C~a~n~~g 194 (212)
+..|+...-.|.+..+.++ .+.|+.|+.++... ....+....++. .+++++.+..... --...|.+....+
T Consensus 231 vL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd 309 (466)
T PHA03270 231 VLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRD 309 (466)
T ss_pred cccCCCceEEEEeeeecCCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccC
Confidence 5679999999999776554 78999999988642 111122222221 3445444433322 2377899875433
No 389
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=84.25 E-value=7 Score=23.59 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=15.9
Q ss_pred CeEEEEcccCCCC-CCcEEEEeC
Q psy2441 45 HTTVLHCSASGNP-PPKISWIRE 66 (212)
Q Consensus 45 ~~v~l~C~~~~~p-~~~v~W~k~ 66 (212)
++++|.|.....+ ...|.|.|.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~ 23 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKI 23 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEc
Confidence 4689999986433 347999885
No 390
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=82.88 E-value=5.2 Score=30.24 Aligned_cols=36 Identities=19% Similarity=0.394 Sum_probs=24.1
Q ss_pred CCCCeEEeCCCccEEeeCCeEEEEcccCC-CCCC-cEEEEeC
Q psy2441 27 PGFPQITEAPSTKVVEISHTTVLHCSASG-NPPP-KISWIRE 66 (212)
Q Consensus 27 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~p~~-~v~W~k~ 66 (212)
.++|.+.+..... .+ .++|.|.+.| +|.. .+.|.|+
T Consensus 201 ~vpP~V~Vt~k~~---~~-~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 201 PVTPTVKVTGEEL---GD-NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CCCCceEEecccC---CC-CceEEEEEEeEeCCccEEEEEec
Confidence 4677766543311 22 5899999988 4543 6899999
No 391
>PHA03273 envelope glycoprotein C; Provisional
Probab=82.80 E-value=18 Score=28.65 Aligned_cols=72 Identities=17% Similarity=0.206 Sum_probs=45.5
Q ss_pred eEecCCcEEEEEeeeeCCCC---ceEEEeCCEEecC-CC-CCceEEcCCCC---ceeEEEcCCCCCC-CeeEEEEEEccc
Q psy2441 123 VVEISHTTVLHCSASGNPPP---KISWIREMLPVDT-SR-NPRYNLLTSGA---PGALQITNSIEED-QGKYECVAENEV 193 (212)
Q Consensus 123 ~~~~g~~~~l~C~~~~~p~~---~i~W~~~~~~~~~-~~-~~~~~~~~~~~---~~~l~i~~~~~~d-~g~y~C~a~n~~ 193 (212)
.+.+|+...-.|.+..+.++ .+.|+.|+.++.. .. ...+....++. .++|.+.+....+ --...|.+....
T Consensus 246 PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~r 325 (486)
T PHA03273 246 PSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYR 325 (486)
T ss_pred ccccCCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEcc
Confidence 36679999999999776544 7899999998883 21 12222233332 3556555544322 347889987543
Q ss_pred c
Q psy2441 194 G 194 (212)
Q Consensus 194 g 194 (212)
+
T Consensus 326 d 326 (486)
T PHA03273 326 D 326 (486)
T ss_pred C
Confidence 3
No 392
>PHA03189 UL14 tegument protein; Provisional
Probab=82.68 E-value=17 Score=26.98 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=15.3
Q ss_pred CCCCCCeeEEEEEEcccccc
Q psy2441 177 SIEEDQGKYECVAENEVGTE 196 (212)
Q Consensus 177 ~~~~d~g~y~C~a~n~~g~~ 196 (212)
+..+.+|.|.|+..|.....
T Consensus 140 v~t~taG~Y~CvLrN~tHgl 159 (348)
T PHA03189 140 VSTSTAGMYECVLRNETHGL 159 (348)
T ss_pred EEecccceEEEEecccccee
Confidence 55677999999999875433
No 393
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=82.23 E-value=4.2 Score=22.42 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=20.7
Q ss_pred EEEcccCCCCCCcEEEEeCCEEecCCCCCeeEEee
Q psy2441 48 VLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLT 82 (212)
Q Consensus 48 ~l~C~~~~~p~~~v~W~k~g~~l~~~~~~~~~~~~ 82 (212)
+|.|..+.+- .++||-||..|-.-....+.+..
T Consensus 2 tltC~s~~sL--PiswYcN~TRLlRlt~~Tlt~~~ 34 (71)
T PF11049_consen 2 TLTCPSNASL--PISWYCNGTRLLRLTQQTLTVVT 34 (71)
T ss_pred ceecCCCCCC--cccEEECCceeeeecCCeEeeee
Confidence 4788876543 37999999777544334444443
No 394
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=82.06 E-value=15 Score=25.81 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=16.2
Q ss_pred EEEEeeeeCCC--CceEEEeCCEEe
Q psy2441 131 VLHCSASGNPP--PKISWIREMLPV 153 (212)
Q Consensus 131 ~l~C~~~~~p~--~~i~W~~~~~~~ 153 (212)
...|.+.--|. ..+.|..++...
T Consensus 93 ~AVC~A~CVP~~~v~l~W~v~d~~~ 117 (211)
T PF02124_consen 93 YAVCTARCVPRGNVTLRWSVGDDPS 117 (211)
T ss_pred EEEEEcceeeCCCeEEEEEECCccC
Confidence 45688766553 488999887654
No 395
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=76.72 E-value=14 Score=22.16 Aligned_cols=78 Identities=27% Similarity=0.413 Sum_probs=42.0
Q ss_pred cccCCcceeEecCCcEEEEEeeeeCCCCceEEEeCC--EEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcc
Q psy2441 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREM--LPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENE 192 (212)
Q Consensus 115 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~--~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~ 192 (212)
+...|....+..|+++.+.|...-..+..+.|.-.= ..+... ..+ ..+.+.+++. | ....|.+. -
T Consensus 6 v~v~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L~k~~~~~g--~~W--------~~f~LsnV~~-d-s~~~C~~~-C 72 (91)
T PF03921_consen 6 VRVSPEEPVVPPGGSVWVNCSTSCPQPEKIGLETSLSKTELDSG--PQW--------KAFQLSNVTE-D-SSPLCFFN-C 72 (91)
T ss_dssp EEEESSEEEEETTEEEEEEEEESSSS-SEEEEESSSEEEEEEEE--TTE--------EEEEEEEE-S-C-EEEEEEEE-E
T ss_pred EEEECCccEECCCCCEEEEEcCCCCCCCcceEEEecCCcccCCC--CcE--------EEEEEEcccc-C-CeEEEEEE-c
Confidence 345667778899999999999854333345554211 111111 111 4566777775 3 56678775 3
Q ss_pred cccceecceEEEE
Q psy2441 193 VGTEYSPSTMLYV 205 (212)
Q Consensus 193 ~g~~~~~~~~l~v 205 (212)
.|.+...++.+.|
T Consensus 73 ~g~Q~~~~~~ItV 85 (91)
T PF03921_consen 73 SGEQSSASANITV 85 (91)
T ss_dssp TTEEEEEEEEEEE
T ss_pred CCeEEEeEEeeEE
Confidence 3544333244433
No 396
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=75.90 E-value=14 Score=22.06 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=23.6
Q ss_pred eEEeCCCccEEeeCCeEEEEcccCCCCCCcEEE
Q psy2441 31 QITEAPSTKVVEISHTTVLHCSASGNPPPKISW 63 (212)
Q Consensus 31 ~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W 63 (212)
.+.+.|....|..|+++.+.|..+...+..+.|
T Consensus 5 ~v~v~P~~~vV~~G~Sv~VNCStsC~~p~~~GL 37 (91)
T PF03921_consen 5 EVRVSPEEPVVPPGGSVWVNCSTSCPQPEKIGL 37 (91)
T ss_dssp -EEEESSEEEEETTEEEEEEEEESSSS-SEEEE
T ss_pred EEEEECCccEECCCCCEEEEEcCCCCCCCcceE
Confidence 345678888899999999999997643333444
No 397
>KOG1480|consensus
Probab=75.51 E-value=0.95 Score=37.63 Aligned_cols=45 Identities=20% Similarity=0.487 Sum_probs=35.9
Q ss_pred CCCeEEeCCCccEEeeCCeEEEEccc-CCCCCCcEEEEeCCEEecC
Q psy2441 28 GFPQITEAPSTKVVEISHTTVLHCSA-SGNPPPKISWIREMLPVDT 72 (212)
Q Consensus 28 ~~p~~~~~~~~~~v~~g~~v~l~C~~-~~~p~~~v~W~k~g~~l~~ 72 (212)
..-.|...|.-..|.++..+.+.|+. .+.|...+.|+|++..+.+
T Consensus 128 ~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~p 173 (909)
T KOG1480|consen 128 LRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDP 173 (909)
T ss_pred HHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCc
Confidence 44455667777889999999998887 6788889999999877665
No 398
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=75.51 E-value=14 Score=21.73 Aligned_cols=44 Identities=23% Similarity=0.358 Sum_probs=25.0
Q ss_pred CCCeEEeCCCccEEeeC----CeEEEEcccCCCCCCcEEEEeCCEEecC
Q psy2441 28 GFPQITEAPSTKVVEIS----HTTVLHCSASGNPPPKISWIREMLPVDT 72 (212)
Q Consensus 28 ~~p~~~~~~~~~~v~~g----~~v~l~C~~~~~p~~~v~W~k~g~~l~~ 72 (212)
.++.+........+... +...|.+.+.+. ...+.||-||..+..
T Consensus 9 ~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~g~ 56 (89)
T PF06832_consen 9 SPLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPLGT 56 (89)
T ss_pred CCCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEccc
Confidence 45555544443333222 244555555444 338999999999943
No 399
>PHA03271 envelope glycoprotein C; Provisional
Probab=73.98 E-value=41 Score=26.42 Aligned_cols=71 Identities=15% Similarity=0.197 Sum_probs=41.9
Q ss_pred EecCCcEEEEEeeeeCCCC---ceEEEeCCEEecCCCCCceEE-cCC--CC---ceeEEEcCCCCCCCeeEEEEEEcccc
Q psy2441 124 VEISHTTVLHCSASGNPPP---KISWIREMLPVDTSRNPRYNL-LTS--GA---PGALQITNSIEEDQGKYECVAENEVG 194 (212)
Q Consensus 124 ~~~g~~~~l~C~~~~~p~~---~i~W~~~~~~~~~~~~~~~~~-~~~--~~---~~~l~i~~~~~~d~g~y~C~a~n~~g 194 (212)
+..|+...-.|.+..+.+| .+.|+.||............. +.+ ++ .++|.+.+.....--...|.+....+
T Consensus 257 VL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd 336 (490)
T PHA03271 257 VLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQG 336 (490)
T ss_pred cccCCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccC
Confidence 5679999999999876554 789999998876541111111 111 11 23444444322223378899875443
No 400
>PHA03112 IL-18 binding protein; Provisional
Probab=70.00 E-value=28 Score=22.75 Aligned_cols=73 Identities=16% Similarity=0.217 Sum_probs=41.7
Q ss_pred EecCCcEEEEEeeeeC-CC-CceEEEeCC-EEecCC-----CCC------ceEEcCCCCceeEEEcCCCCC-CCeeEEEE
Q psy2441 124 VEISHTTVLHCSASGN-PP-PKISWIREM-LPVDTS-----RNP------RYNLLTSGAPGALQITNSIEE-DQGKYECV 188 (212)
Q Consensus 124 ~~~g~~~~l~C~~~~~-p~-~~i~W~~~~-~~~~~~-----~~~------~~~~~~~~~~~~l~i~~~~~~-d~g~y~C~ 188 (212)
..+++.+.|+|.+-+. |. ..++|..++ +..... ... +.....+.....|.+.+++.. ..-.++|+
T Consensus 35 ~k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCV 114 (141)
T PHA03112 35 TKETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCV 114 (141)
T ss_pred cCCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEE
Confidence 3458899999999765 43 578899765 332211 001 111111122456777777754 34488998
Q ss_pred EEcccccc
Q psy2441 189 AENEVGTE 196 (212)
Q Consensus 189 a~n~~g~~ 196 (212)
.....|..
T Consensus 115 L~D~~~~~ 122 (141)
T PHA03112 115 LMDLDGPI 122 (141)
T ss_pred EecCCchh
Confidence 87665544
No 401
>KOG1026|consensus
Probab=68.49 E-value=4.5 Score=34.15 Aligned_cols=73 Identities=27% Similarity=0.391 Sum_probs=46.9
Q ss_pred eeEecCCcEEEEEeeeeCCCCceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecce
Q psy2441 122 KVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPST 201 (212)
Q Consensus 122 ~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~ 201 (212)
..+..|.++.+.|.+.+.|.|.+.|+.++...... ........+ ....+. .+.|.+.|..|..... +
T Consensus 202 ~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~-~~~~~~c~~---~~~~~~--------~~~c~~E~~~~~~~~~-v 268 (774)
T KOG1026|consen 202 LTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNT-NQTSSLCRS---ECEVLE--------NDLCIAENAVARSNPS-I 268 (774)
T ss_pred hhhcccchheeeeecccCCCcceeeecccccccCC-Ccccccccc---cceeee--------chhhHHHHhhhhcCce-e
Confidence 45677889999999999999999999877555442 111111111 111111 1788888888887766 6
Q ss_pred EEEEec
Q psy2441 202 MLYVKG 207 (212)
Q Consensus 202 ~l~v~~ 207 (212)
.+.+..
T Consensus 269 ~~~~~~ 274 (774)
T KOG1026|consen 269 LLVVDL 274 (774)
T ss_pred eeEEec
Confidence 555544
No 402
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=68.42 E-value=56 Score=25.62 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=19.2
Q ss_pred ceeEEEcCCCCCCCeeEEEEEEc
Q psy2441 169 PGALQITNSIEEDQGKYECVAEN 191 (212)
Q Consensus 169 ~~~l~i~~~~~~d~g~y~C~a~n 191 (212)
.-.+.+.+++..|.|.|.|..--
T Consensus 80 eYsf~~~Nvs~sdEGrYrCIFYL 102 (500)
T PHA02914 80 EYSFIEENIGEHEDGDFKCIFYL 102 (500)
T ss_pred eeEEEecCcccccCCcEEEEEEe
Confidence 35678889999999999998753
No 403
>KOG1026|consensus
Probab=66.74 E-value=13 Score=31.63 Aligned_cols=35 Identities=29% Similarity=0.495 Sum_probs=29.7
Q ss_pred ccEEeeCCeEEEEcccCCCCCCcEEEEeCCEEecC
Q psy2441 38 TKVVEISHTTVLHCSASGNPPPKISWIREMLPVDT 72 (212)
Q Consensus 38 ~~~v~~g~~v~l~C~~~~~p~~~v~W~k~g~~l~~ 72 (212)
...+..|..+++.|...+.|.+.+.|+..+.....
T Consensus 201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~ 235 (774)
T KOG1026|consen 201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSN 235 (774)
T ss_pred hhhhcccchheeeeecccCCCcceeeecccccccC
Confidence 56678899999999999999999999998765544
No 404
>PF05955 Herpes_gp2: Equine herpesvirus glycoprotein gp2; InterPro: IPR010278 This entry consists of a number of glycoprotein Gp2 sequences mainly found from equine herpesviruses [].; GO: 0016032 viral reproduction, 0016021 integral to membrane
Probab=62.58 E-value=47 Score=22.67 Aligned_cols=61 Identities=16% Similarity=0.273 Sum_probs=37.4
Q ss_pred EEEeeee-CCCCceEEEeCCEEecCCC--CCceEEcCCCC---ceeEEEcCCCCCCCeeEEEEEEcc
Q psy2441 132 LHCSASG-NPPPKISWIREMLPVDTSR--NPRYNLLTSGA---PGALQITNSIEEDQGKYECVAENE 192 (212)
Q Consensus 132 l~C~~~~-~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~a~n~ 192 (212)
--|.... ...|.|.|..+...+..+. ...|...+... .+...|.+.+..++-.|.|.+.-.
T Consensus 112 AvCitseL~s~PtitWsVgs~rl~n~gftqtwy~iqPGvCgilrS~v~~~R~~G~~~~~y~c~~~~~ 178 (226)
T PF05955_consen 112 AVCITSELVSQPTITWSVGSDRLRNDGFTQTWYGIQPGVCGILRSEVRIPRAEGRDNVDYLCEIRAL 178 (226)
T ss_pred EEEeeccccCCCeEEEEeccceeecCCccceeecccCcceeeEeeeeecccCCCCCcccEEeccccc
Confidence 3466533 4468999998777776541 11222222211 345677777888888999988654
No 405
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=56.05 E-value=2.4e+02 Score=28.75 Aligned_cols=189 Identities=12% Similarity=0.082 Sum_probs=91.0
Q ss_pred ceeeEEE--eeccCCCcceecccccCCCCC-eEEeCCCccEEeeCCeEEEEcccCCCCCCcEEEEeC-CEEecCCCCCee
Q psy2441 3 IGTYIKI--KPNLFSPLSVYSADKIPPGFP-QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE-MLPVDTSRNPRY 78 (212)
Q Consensus 3 ~g~Y~C~--~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~k~-g~~l~~~~~~~~ 78 (212)
+|.|.-. +.|..+..... ....+..++ .+........+..|+.+.|.+.+...+...+.|..+ |.+.......++
T Consensus 1839 aG~ytV~L~AsN~vs~~~~s-~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t~~~t~ 1917 (2740)
T TIGR00864 1839 AGTFAIRLNASNAVSGKSAS-REFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQPGPRF 1917 (2740)
T ss_pred CeEEEEEEEEEcccCcceee-eeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCCceeecCCCeE
Confidence 4666644 55666555433 233334444 333455556777899999999987666778899775 333321111333
Q ss_pred EEeecCCCCeEEEeeeC------CccceeEEeecCCCCCCCccccCCc-ceeEecCCcEEEEEeeeeCCCCceEEEeCCE
Q psy2441 79 NLLTSGAPGTYIKIKPN------LFSPLSVYSADKIPPGFPQITEAPS-TKVVEISHTTVLHCSASGNPPPKISWIREML 151 (212)
Q Consensus 79 ~~~~~~~~g~~l~i~~~------~~~~~~v~~~~~~~~~~p~~~~~~~-~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~ 151 (212)
.- .....|.|+.-..+ ..+.+.|.....+ ..+.+... ...+..|+...|.-.+....+-.+.|++.-.
T Consensus 1918 ~H-sY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V----~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~~~ 1992 (2740)
T TIGR00864 1918 SH-SFPRVDDHMVNLRAKNEVSCAQANLHIEVLEAV----RGLQIPDCCAAGIATGEEKNFTANVQRGKPVAFAWTFDLH 1992 (2740)
T ss_pred Ee-ecCCCCcEEEEEEEEeccceeeeeEEEEEEEec----cceEecCCcccceecCceEEEEEEEecCCceEEEEEeeec
Confidence 22 12234444432221 2222222221111 11111111 1114568888888887555555788986433
Q ss_pred EecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEE--EEEEcccccceecceEEEEec
Q psy2441 152 PVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYE--CVAENEVGTEYSPSTMLYVKG 207 (212)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~--C~a~n~~g~~~~~~~~l~v~~ 207 (212)
.+... ..+. ... ...+. .....|.|. ..|.|..|..... ..+.|+.
T Consensus 1993 ~~~g~--~~~~-~~G---~~vty---~~~~~G~~~I~v~A~N~l~s~n~t-~~i~VQ~ 2040 (2740)
T TIGR00864 1993 HLHGD--SLVI-HMG---KDVSY---TAEAAGLLEIQLGAFNALGAENIT-LQLEAQD 2040 (2740)
T ss_pred ccCCC--ccee-ecC---CceEE---ccCCCcEEEEEEEEEcccCccccc-EEEEEEe
Confidence 22221 1110 111 11111 123467665 4567888876544 5555543
No 406
>PHA03282 envelope glycoprotein E; Provisional
Probab=55.85 E-value=32 Score=27.39 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=19.9
Q ss_pred eeEEEcCCCCCCCeeEEEEEEcc
Q psy2441 170 GALQITNSIEEDQGKYECVAENE 192 (212)
Q Consensus 170 ~~l~i~~~~~~d~g~y~C~a~n~ 192 (212)
.+|.|.++..+|+|.|+-.+...
T Consensus 124 ~tl~l~~a~~~DsG~Y~L~~~~~ 146 (540)
T PHA03282 124 GTLVLREARETDSGMYVLSVSRA 146 (540)
T ss_pred ceEEEeeccccCCceEEEEecCC
Confidence 67999999999999999887443
No 407
>PHA03286 envelope glycoprotein E; Provisional
Probab=49.82 E-value=36 Score=26.98 Aligned_cols=39 Identities=23% Similarity=0.315 Sum_probs=32.8
Q ss_pred eeEEEcCCCCCCCeeEEEEEEcccccceecceEEEEecc
Q psy2441 170 GALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGT 208 (212)
Q Consensus 170 ~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v~~~ 208 (212)
+.|.|.+++.+.+|.|+-...|..|....+.+.+.|++.
T Consensus 127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~ 165 (492)
T PHA03286 127 KELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGH 165 (492)
T ss_pred CceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecC
Confidence 689999999999999999999988777776577778543
No 408
>KOG0613|consensus
Probab=48.49 E-value=46 Score=30.11 Aligned_cols=35 Identities=9% Similarity=-0.008 Sum_probs=26.8
Q ss_pred ccEEeeCCeEEEEcccCCCCCCc-EEEEeCCEEecC
Q psy2441 38 TKVVEISHTTVLHCSASGNPPPK-ISWIREMLPVDT 72 (212)
Q Consensus 38 ~~~v~~g~~v~l~C~~~~~p~~~-v~W~k~g~~l~~ 72 (212)
.+.+..+..+++.|...+.+.+. +.||.++.....
T Consensus 343 ~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~ 378 (1205)
T KOG0613|consen 343 SVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSE 378 (1205)
T ss_pred eeccccCcceeecccccCCcCCchheeecccccccc
Confidence 34556678999999999888776 999998755443
No 409
>PF13220 DUF4028: Protein of unknown function (DUF4028)
Probab=43.97 E-value=21 Score=18.64 Aligned_cols=19 Identities=21% Similarity=0.695 Sum_probs=14.3
Q ss_pred CCCCeeEEEEEEcccccce
Q psy2441 179 EEDQGKYECVAENEVGTEY 197 (212)
Q Consensus 179 ~~d~g~y~C~a~n~~g~~~ 197 (212)
.+.+..|.|.++|..|...
T Consensus 7 kdssnsflctvqnkng~~y 25 (65)
T PF13220_consen 7 KDSSNSFLCTVQNKNGDQY 25 (65)
T ss_pred ecCCCceEEEEecccHhHH
Confidence 3446789999999887653
No 410
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=41.14 E-value=62 Score=17.69 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=22.0
Q ss_pred ccEEeeCCeEEEEcccCCCCCCcEEEEeCC
Q psy2441 38 TKVVEISHTTVLHCSASGNPPPKISWIREM 67 (212)
Q Consensus 38 ~~~v~~g~~v~l~C~~~~~p~~~v~W~k~g 67 (212)
...+..|+.+.|...........+.|..++
T Consensus 5 ~~~~~~g~~v~f~~~~~~g~~~~y~W~fgd 34 (69)
T PF00801_consen 5 PTYVPTGQPVTFTASSSDGSPVTYSWDFGD 34 (69)
T ss_dssp CSCEBTTSEEEEEETTTTSSECEEEEE-SS
T ss_pred CCEEcCCCEEEEEEEccCCCCeEEEEEECC
Confidence 345778999999999843345579999988
No 411
>PHA03283 envelope glycoprotein E; Provisional
Probab=40.40 E-value=57 Score=26.48 Aligned_cols=37 Identities=22% Similarity=0.166 Sum_probs=29.6
Q ss_pred eeEEEcCCCCCCCeeEEEEEEcccccceecceEEEEec
Q psy2441 170 GALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207 (212)
Q Consensus 170 ~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v~~ 207 (212)
..|.|.+++.+++|.|+-...+..+..... +.+.|+.
T Consensus 134 ~~l~I~~at~~~aGVYtly~r~d~~~~~~v-flvtVk~ 170 (542)
T PHA03283 134 SVLQIQRATPNIAGVYTLHVSSDGMMKHSV-FFVTVKK 170 (542)
T ss_pred CeeEEEecccccCeEEEEEecCCCceEEEE-EEEEecC
Confidence 789999999999999999998876633333 6777766
No 412
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=40.34 E-value=1e+02 Score=20.04 Aligned_cols=35 Identities=20% Similarity=0.433 Sum_probs=18.6
Q ss_pred eEEeCCCccEEeeCCeEEEEccc--CCC-C--CCcEEEEe
Q psy2441 31 QITEAPSTKVVEISHTTVLHCSA--SGN-P--PPKISWIR 65 (212)
Q Consensus 31 ~~~~~~~~~~v~~g~~v~l~C~~--~~~-p--~~~v~W~k 65 (212)
++...|....+..|++|.+.|.+ .|. . .-.+.|+.
T Consensus 34 ~v~tmPVpk~I~~GeTvEIR~~l~reG~y~~t~Y~iRYFQ 73 (137)
T PF12988_consen 34 TVETMPVPKKIKKGETVEIRCELKREGNYADTRYTIRYFQ 73 (137)
T ss_dssp EEEE----SS--TTEEEEEEEEEEESS--SS---EEEEE-
T ss_pred EEEEeccccccCCCCEEEEEEEEecCceecccEEEEEEEe
Confidence 44566777888999999999998 343 2 23566664
No 413
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=38.54 E-value=10 Score=30.04 Aligned_cols=38 Identities=34% Similarity=0.525 Sum_probs=0.0
Q ss_pred eeEEEcCCCCCCCeeEEEEEEcccccceecceEEEEec
Q psy2441 170 GALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207 (212)
Q Consensus 170 ~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v~~ 207 (212)
+.|.|.+++.+|+|.|+-...+..+......+.|.|+.
T Consensus 89 ~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~ 126 (439)
T PF02480_consen 89 GGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKG 126 (439)
T ss_dssp --------------------------------------
T ss_pred CceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcC
Confidence 67999999999999999999887776666546666654
No 414
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=36.35 E-value=67 Score=25.69 Aligned_cols=21 Identities=38% Similarity=0.366 Sum_probs=16.4
Q ss_pred eeEEEcCCCCCCCeeEEEEEE
Q psy2441 170 GALQITNSIEEDQGKYECVAE 190 (212)
Q Consensus 170 ~~l~i~~~~~~d~g~y~C~a~ 190 (212)
-.|.+.++...++|.|.|++.
T Consensus 269 ~~l~f~~a~~~~sGLYv~V~~ 289 (439)
T PF02480_consen 269 VDLQFTNAPESASGLYVFVVY 289 (439)
T ss_dssp SSEEESS--GGG-EEEEEEEE
T ss_pred cceEecCCCcccCceEEEEEE
Confidence 679999999999999999986
No 415
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=34.31 E-value=1.3e+02 Score=20.28 Aligned_cols=24 Identities=29% Similarity=0.181 Sum_probs=19.9
Q ss_pred eeEEEcCCCCCCCeeEEEEEEccc
Q psy2441 170 GALQITNSIEEDQGKYECVAENEV 193 (212)
Q Consensus 170 ~~l~i~~~~~~d~g~y~C~a~n~~ 193 (212)
--|.|.+...+|+|.|.-.+.-..
T Consensus 124 ~lL~i~~p~~~dsG~Y~lRV~l~~ 147 (161)
T PF01688_consen 124 VLLRIRNPRPEDSGIYYLRVWLDG 147 (161)
T ss_pred eEEEeCCCCcccceEEEEEEEECC
Confidence 468999999999999998886443
No 416
>PHA03282 envelope glycoprotein E; Provisional
Probab=31.19 E-value=63 Score=25.89 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=19.2
Q ss_pred eeEEEcCCCCCCCeeEEEEEE
Q psy2441 170 GALQITNSIEEDQGKYECVAE 190 (212)
Q Consensus 170 ~~l~i~~~~~~d~g~y~C~a~ 190 (212)
-.|.+.|...+++|.|.|++.
T Consensus 333 VdL~F~nAp~saSGLYVfVl~ 353 (540)
T PHA03282 333 VNLQLRDASEASGGLYVCVVY 353 (540)
T ss_pred cceEecCCCcccCceEEEEEE
Confidence 479999999999999999986
No 417
>KOG3611|consensus
Probab=30.19 E-value=1.1e+02 Score=26.48 Aligned_cols=60 Identities=23% Similarity=0.484 Sum_probs=35.6
Q ss_pred cEEEEEeeeeCCCCceEEEeCCEE----ecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcc
Q psy2441 129 TTVLHCSASGNPPPKISWIREMLP----VDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENE 192 (212)
Q Consensus 129 ~~~l~C~~~~~p~~~i~W~~~~~~----~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~ 192 (212)
+..|.|...+.-.+ +.|+..... .+............ +.+.+..+...|.|.|.|.+...
T Consensus 571 ~~~l~c~~~~~~a~-~~w~~~~~~~~~~~~~~~~~~~~~~~~---G~lll~~~q~~~~G~y~c~~~e~ 634 (737)
T KOG3611|consen 571 SEVLRCVPSSNQAP-VVWYHQSTKDGRKEEVRQRDVVSRTDE---GGLVLLSVQKLDGGTYPCYADES 634 (737)
T ss_pred cceeeccccccccc-eeeEeeccCccccceeccCcceeeccc---CceeEEEEeeccCcccccccccC
Confidence 46788887665554 778742211 11111222222222 45777788888999999999754
No 418
>PF03174 CHB_HEX_C: Chitobiase/beta-hexosaminidase C-terminal domain; InterPro: IPR004867 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This short domain is found in members of the glycoside hydrolase family 20 (GH20 from CAZY) and represents the C-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. It is composed of a beta sandwich structure []. The function of this domain is unknown. ; GO: 0004563 beta-N-acetylhexosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=26.93 E-value=1.3e+02 Score=16.94 Aligned_cols=27 Identities=15% Similarity=0.178 Sum_probs=16.2
Q ss_pred eEecCCcEEEEEeeeeCCCCceEEEeCCEE
Q psy2441 123 VVEISHTTVLHCSASGNPPPKISWIREMLP 152 (212)
Q Consensus 123 ~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~ 152 (212)
....+..+.|.|. .+...|.+..+|..
T Consensus 11 ~~~~~~~v~l~~~---~~~~~I~YT~DGs~ 37 (75)
T PF03174_consen 11 TYDEGQTVTLSSD---TPGATIYYTLDGSE 37 (75)
T ss_dssp EEEETTEEEEE-S---STTSEEEEESSSSS
T ss_pred cEecCeEEEEEeC---CCCCEEEEEcCCCc
Confidence 4455778888883 34447777776543
No 419
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=24.57 E-value=1.4e+02 Score=16.53 Aligned_cols=21 Identities=24% Similarity=0.640 Sum_probs=13.5
Q ss_pred EecCCcEEEEEeeeeCCCCceEEEe
Q psy2441 124 VEISHTTVLHCSASGNPPPKISWIR 148 (212)
Q Consensus 124 ~~~g~~~~l~C~~~~~p~~~i~W~~ 148 (212)
+..|..++|. |.+...+.|++
T Consensus 2 v~~G~N~TL~----Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTLV----GPPDGPVTWYK 22 (63)
T ss_pred EeEcCcEEEe----CCCCCceEEEE
Confidence 3456677665 44556789984
No 420
>PHA03281 envelope glycoprotein E; Provisional
Probab=23.55 E-value=1.8e+02 Score=24.08 Aligned_cols=39 Identities=18% Similarity=0.299 Sum_probs=29.3
Q ss_pred eeEEEcCCCCCCCeeEEEEEEcccccceecceEEEEecc
Q psy2441 170 GALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGT 208 (212)
Q Consensus 170 ~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v~~~ 208 (212)
+.|.|.+++.+.+|.|+-......|......+.+.|+.+
T Consensus 298 ~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~ 336 (642)
T PHA03281 298 GVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGD 336 (642)
T ss_pred CeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCC
Confidence 689999999999999998887655544443367777653
No 421
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=22.55 E-value=1.5e+02 Score=16.37 Aligned_cols=58 Identities=12% Similarity=0.150 Sum_probs=33.9
Q ss_pred ceEEEeCCEEecCCCCCceEEcCCCCceeEEEcCCCCCCCeeEEEEEEcccccceecceEEEE
Q psy2441 143 KISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205 (212)
Q Consensus 143 ~i~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~~l~v 205 (212)
...|++++.....- .+.+. .+.-.+-.-+...+...|.+...+....|..-.. ..+.|
T Consensus 8 ~H~W~~~g~~~~~i---~l~i~-g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~-~~F~V 65 (66)
T PF11141_consen 8 YHRWYKNGKLVARI---PLPIS-GGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGS-LRFSV 65 (66)
T ss_pred EEEEEECCEEEEEE---EEecc-CCCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEE-EEEEE
Confidence 45699988766431 11111 1111333334445577899999998888876555 55554
No 422
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=22.47 E-value=1.7e+02 Score=16.74 Aligned_cols=40 Identities=23% Similarity=0.340 Sum_probs=28.1
Q ss_pred eEEeCCCccEEeeCCeEEEEcccCC-C-C-CCcEEEEeCCEEe
Q psy2441 31 QITEAPSTKVVEISHTTVLHCSASG-N-P-PPKISWIREMLPV 70 (212)
Q Consensus 31 ~~~~~~~~~~v~~g~~v~l~C~~~~-~-p-~~~v~W~k~g~~l 70 (212)
.+.+.|....+..|+...|...+.. . + ...+.|.-.+..+
T Consensus 4 ~i~i~p~~~~l~~G~~~~l~a~~~~~~~~~~~~v~w~Ssn~~v 46 (81)
T smart00635 4 SVTVTPTTASVKKGLTLQLTATVTPSSAKVTGKVTWTSSNPSV 46 (81)
T ss_pred EEEEeCCeeEEeCCCeEEEEEEEECCCCCccceEEEEECCCcE
Confidence 3556777888899999999887532 2 2 3468898876444
No 423
>KOG4597|consensus
Probab=22.18 E-value=54 Score=26.30 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=27.2
Q ss_pred eCCCccEEeeCCeEEEEcccCCCCCCcEEEEe
Q psy2441 34 EAPSTKVVEISHTTVLHCSASGNPPPKISWIR 65 (212)
Q Consensus 34 ~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~k 65 (212)
--|....+.++++..++|-+.|.|.+.|.|-+
T Consensus 201 ~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~q 232 (560)
T KOG4597|consen 201 DCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQ 232 (560)
T ss_pred cCcchhhcccchhhcccccccCCcCceeeeeh
Confidence 34556678889999999999999999999976
No 424
>PHA03283 envelope glycoprotein E; Provisional
Probab=20.87 E-value=1.5e+02 Score=24.22 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=19.0
Q ss_pred eeEEEcCCCCCCCeeEEEEEE
Q psy2441 170 GALQITNSIEEDQGKYECVAE 190 (212)
Q Consensus 170 ~~l~i~~~~~~d~g~y~C~a~ 190 (212)
-.|.+.++...++|.|.|++.
T Consensus 315 v~L~f~nap~~~SGLYVfVv~ 335 (542)
T PHA03283 315 VDLLFKNAPASASGLYVFVLL 335 (542)
T ss_pred cceEeccCCcccCceEEEEEE
Confidence 578999999999999999986
No 425
>PF13141 DUF3979: Protein of unknown function (DUF3979)
Probab=20.10 E-value=1.1e+02 Score=18.28 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=23.9
Q ss_pred CCeEEEEcccCCCCCCcEEEEeCCEEecCCCCCeeEEeec
Q psy2441 44 SHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTS 83 (212)
Q Consensus 44 g~~v~l~C~~~~~p~~~v~W~k~g~~l~~~~~~~~~~~~~ 83 (212)
..++.|... .+....++.||+|.++..- .|+.+...
T Consensus 37 ~msvelyfn--eyde~ritlyk~g~pittm--qriai~k~ 72 (114)
T PF13141_consen 37 HMSVELYFN--EYDEVRITLYKDGNPITTM--QRIAISKV 72 (114)
T ss_pred ceeeEEEec--ccceEEEEEEeCCCchhhe--eeeeeEEe
Confidence 344444432 2445578999999999886 77776654
Done!