RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2441
(212 letters)
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 146 bits (370), Expect = 2e-44
Identities = 76/202 (37%), Positives = 99/202 (49%), Gaps = 24/202 (11%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTY 89
P+ T P + C A+G+P PKI W ++ V R + G+
Sbjct: 7 PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQR--FEVIEFDDGSGSV 64
Query: 90 IKIKPNLFS---------------------PLSVYSADKIPPGFPQITEAPSTKVVEISH 128
++I+P L+V D+IP GFP I P KVVE +
Sbjct: 65 LRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTR 124
Query: 129 TTVLHCSASGNPPPKISWIREMLPVDTSR-NPRYNLLTSGAPGALQITNSIEEDQGKYEC 187
T + C+ASGNP P+I+W ++ LPVDTS N R L S + GALQI S E DQGKYEC
Sbjct: 125 TATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYEC 184
Query: 188 VAENEVGTEYSPSTMLYVKGTQ 209
VA N GT YS LYV+GT+
Sbjct: 185 VATNSAGTRYSAPANLYVRGTK 206
Score = 67.2 bits (164), Expect = 4e-14
Identities = 35/73 (47%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 17 LSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSR-N 75
L+V D+IP GFP I P KVVE + T + C+ASGNP P+I+W ++ LPVDTS N
Sbjct: 96 LTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNN 155
Query: 76 PRYNLLTSGAPGT 88
R L S + G
Sbjct: 156 GRIKQLRSESIGA 168
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 143 bits (363), Expect = 2e-43
Identities = 79/199 (39%), Positives = 105/199 (52%), Gaps = 28/199 (14%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTY 89
P+I P + V + +C+A G+PPP I W + V + RY +L +
Sbjct: 7 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGT-QSRYTVLEQPGGISI 65
Query: 90 IKIKPNLFSP----------------------LSVYSADKIPPGFPQITEAPSTKVVEIS 127
++I+P L++Y DK P GFP IT+ P T+V+E+
Sbjct: 66 LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVG 125
Query: 128 HTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYEC 187
HT ++ C A GNP P I WI+ VD S NPRY+L G LQI NS EEDQGKYEC
Sbjct: 126 HTVLMTCKAIGNPTPNIYWIKNQTKVDMS-NPRYSLKD----GFLQIENSREEDQGKYEC 180
Query: 188 VAENEVGTEYSPSTMLYVK 206
VAEN +GTE+S +T LYVK
Sbjct: 181 VAENSMGTEHSKATNLYVK 199
Score = 82.9 bits (205), Expect = 7e-20
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 1/100 (1%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGAL 172
P+I P + V + +C+A G+PPP I W + V +++ L G L
Sbjct: 7 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 66
Query: 173 QITNS-IEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVD 211
+I D YECVAEN VG S L +
Sbjct: 67 RIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKT 106
Score = 66.0 bits (161), Expect = 1e-13
Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 17 LSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNP 76
L++Y DK P GFP IT+ P T+V+E+ HT ++ C A GNP P I WI+ VD S
Sbjct: 98 LTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSN-- 155
Query: 77 RYNLLTSGA 85
L G
Sbjct: 156 PRYSLKDGF 164
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 146 bits (370), Expect = 3e-43
Identities = 70/203 (34%), Positives = 98/203 (48%), Gaps = 27/203 (13%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTY 89
P+ + P ++ C A+G+P P+++W ++ V++ R S G
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA--GAV 64
Query: 90 IKIKPNLFSP---------------------LSVYSADKIPPGFPQITEAPSTKVVEISH 128
++I+P L+V D++P GFP I P KVVE +
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTR 124
Query: 129 TTVLHCSASGNPPPKISWIREMLPVDTS-RNPRYNLLTSGAPGALQITNSIEEDQGKYEC 187
T + C+ASGNP P+I+W ++ LPVD S N R L SGA LQI +S E DQGKYEC
Sbjct: 125 TATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGA---LQIESSEETDQGKYEC 181
Query: 188 VAENEVGTEYSPSTMLYVKGTQV 210
VA N G YS LYV+ V
Sbjct: 182 VATNSAGVRYSSPANLYVRVQNV 204
Score = 131 bits (330), Expect = 2e-37
Identities = 56/207 (27%), Positives = 86/207 (41%), Gaps = 27/207 (13%)
Query: 17 LSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTS-RN 75
L+V D++P GFP I P KVVE + T + C+ASGNP P+I+W ++ LPVD S N
Sbjct: 96 LTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASN 155
Query: 76 PRYNLLTSGA----------PGTYI-----KIKPNLFSPLSVYSADKIPPGFPQITEAPS 120
R L SGA G Y SP ++Y + P+ + P
Sbjct: 156 GRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVA--PRFSILPM 213
Query: 121 TKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEE 180
+ + + C A G+P P + W++ + + G + + +
Sbjct: 214 SHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPV--------GRNVLELTDVK 265
Query: 181 DQGKYECVAENEVGTEYSPSTMLYVKG 207
D Y CVA + +G + VK
Sbjct: 266 DSANYTCVAMSSLGVI-EAVAQITVKS 291
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 137 bits (347), Expect = 3e-41
Identities = 56/196 (28%), Positives = 81/196 (41%), Gaps = 18/196 (9%)
Query: 22 ADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLL 81
A+K+P P IT T + C+ P P+ISW R + + + RY++
Sbjct: 1 AEKLPKA-PVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLF-DTRYSIR 58
Query: 82 TSGAP-----------GTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTT 130
+G G Y N P+IT P +
Sbjct: 59 ENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKA 118
Query: 131 VLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAE 190
VL C+ GNP P +SWI+ + N R +L S G+L+I N +ED G+Y CVA+
Sbjct: 119 VLPCTTMGNPKPSVSWIKGDSALRE--NSRIAVLES---GSLRIHNVQKEDAGQYRCVAK 173
Query: 191 NEVGTEYSPSTMLYVK 206
N +GT YS L V+
Sbjct: 174 NSLGTAYSKLVKLEVE 189
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 124 bits (313), Expect = 7e-36
Identities = 53/198 (26%), Positives = 77/198 (38%), Gaps = 27/198 (13%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNP---RYNLLTSGAP 86
P+I E PS +V L+C A G P P I W + V+T ++ LL SG+
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS- 68
Query: 87 GTYIKIKPNLFSPL--------------SVYSAD---KIPPGFPQITEAPSTKVVEISHT 129
+++I S S D ++ + PS +V +
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEP 128
Query: 130 TVLHCSA-SGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECV 188
V+ C G+P P ISW ++ P+D + G L IT + + D GKY CV
Sbjct: 129 AVMECQPPRGHPEPTISWKKDGSPLDDKD--ERITIRGGK---LMITYTRKSDAGKYVCV 183
Query: 189 AENEVGTEYSPSTMLYVK 206
N VG S L V
Sbjct: 184 GTNMVGERESEVAELTVL 201
Score = 50.6 bits (121), Expect = 5e-08
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 24 KIPPGFPQITEAPSTKVVEISHTTVLHCSA-SGNPPPKISWIREMLPVDTSRNPRYNLLT 82
++ + PS +V + V+ C G+P P ISW ++ P+D +
Sbjct: 106 EVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKD--ERITIR 163
Query: 83 SGA 85
G
Sbjct: 164 GGK 166
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 123 bits (310), Expect = 1e-35
Identities = 33/187 (17%), Positives = 62/187 (33%), Gaps = 18/187 (9%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAP--- 86
Q+T + S + + + C+A G P + + + +++ R + G
Sbjct: 3 LQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQ--RVVVQKEGVRSRL 60
Query: 87 ----------GTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSA 136
G Y + + E S + + + C
Sbjct: 61 TIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRV 120
Query: 137 SGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTE 196
S +P P +SW+ V T + R+ +L + LQI N + D+G Y C E E
Sbjct: 121 SSSPAPAVSWLYHNEEVTTISDNRFAMLAN---NNLQILNINKSDEGIYRCEGRVEARGE 177
Query: 197 YSPSTML 203
++
Sbjct: 178 IDFRDII 184
Score = 89.5 bits (222), Expect = 1e-22
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGAL 172
Q+T + S + + + C+A G P + + + +++ R + G L
Sbjct: 3 LQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQ--RVVVQKEGVRSRL 60
Query: 173 QITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
I N+ ED G Y C A + G + +L +
Sbjct: 61 TIYNANIEDAGIYRCQATDAKGQTQEATVVLEIY 94
Score = 59.8 bits (145), Expect = 1e-11
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 17 LSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNP 76
L +Y E S + + + C S +P P +SW+ V T +
Sbjct: 91 LEIYQK-------LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDN 143
Query: 77 RYNLLTSG 84
R+ +L +
Sbjct: 144 RFAMLANN 151
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 124 bits (312), Expect = 1e-35
Identities = 37/206 (17%), Positives = 64/206 (31%), Gaps = 28/206 (13%)
Query: 18 SVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPR 77
+ + + P +IT P +K V L C A+G+P + W + +
Sbjct: 7 HHHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSE 66
Query: 78 YNLLTSGAP--GTYI---------------KIKPNLFSPLSVYSADKIPPGFPQITEAPS 120
G Y+ ++ S D + QI P+
Sbjct: 67 LIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPT 126
Query: 121 TKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEE 180
++ + T VL C A G+P P W + LP+ + E
Sbjct: 127 SQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK-----------KLYMVPYVDLE 175
Query: 181 DQGKYECVAENEVGTEYSPSTMLYVK 206
QG Y C N+ ++ S + +
Sbjct: 176 HQGTYWCHVYNDRDSQDSKKVEIIID 201
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 123 bits (311), Expect = 1e-35
Identities = 47/200 (23%), Positives = 75/200 (37%), Gaps = 26/200 (13%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTY 89
P+I E P+ VV+ + L+C G P P I W ++ PV T+ + + +
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFF 69
Query: 90 IKIKPNLF-------------SPLSVYSAD---KIPPGFPQITEAPSTKVVEISHTTVLH 133
+ S +I P V T +L
Sbjct: 70 YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLE 129
Query: 134 CS-ASGNPPPKISWIREMLPVD------TSRNPRYNLLTSGAPGALQITNSIEEDQGKYE 186
C G P P + WI++ +P+D + R ++ G L I+N D+G Y+
Sbjct: 130 CGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGN---LLISNVEPIDEGNYK 186
Query: 187 CVAENEVGTEYSPSTMLYVK 206
C+A+N VGT S L V+
Sbjct: 187 CIAQNLVGTRESSYAKLIVQ 206
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 119 bits (299), Expect = 4e-34
Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 19/191 (9%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPP-PKISWIREMLPVDTSRNPRYNLLTSGAPGT 88
Q+ PS + + + C +G+ ISW + R +++ + +
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 89 YIKIKP--------------NLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHC 134
+ I S + + AP+ + + V+ C
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVC 122
Query: 135 SASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVG 194
+ PP I W + V ++ R+ +L++ LQI + D+G Y C
Sbjct: 123 DVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN---NYLQIRGIKKTDEGTYRCEGRILAR 179
Query: 195 TEYSPSTMLYV 205
E + + V
Sbjct: 180 GEIN-FKDIQV 189
Score = 81.4 bits (201), Expect = 1e-19
Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 2/96 (2%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPP-PKISWIRE-MLPVDTSRNPRYNLLTSGAPG 170
Q+ PS + + + C +G+ ISW + ++ +
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 171 ALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
L I N+ +D G Y+CV E GT+ + + +
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF 98
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 120 bits (303), Expect = 1e-33
Identities = 40/192 (20%), Positives = 73/192 (38%), Gaps = 16/192 (8%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGA---- 85
AP+ + + V+ C + PP I W + V ++ R+ +L++
Sbjct: 101 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIR 160
Query: 86 ------PGTYI----KIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCS 135
GTY + + + +PP Q ++ + + L C
Sbjct: 161 GIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTV-QARQSIVNATANLGQSVTLVCD 219
Query: 136 ASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGT 195
A G P P +SW ++ P++ + S L I N + D+ +Y C+AEN+ G
Sbjct: 220 ADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGE 279
Query: 196 EYSPSTMLYVKG 207
+ + S L V
Sbjct: 280 QDA-SIHLKVFA 290
Score = 116 bits (292), Expect = 5e-32
Identities = 30/184 (16%), Positives = 60/184 (32%), Gaps = 18/184 (9%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPP-PKISWIREMLPVDTSRNPRYNLLTSGAPGT 88
Q+ PS + + + C +G+ ISW + R +++ + +
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 89 YIKIKP--------------NLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHC 134
+ I S + + AP+ + + V+ C
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVC 122
Query: 135 SASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVG 194
+ PP I W + V ++ R+ +L++ LQI + D+G Y C
Sbjct: 123 DVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN---NYLQIRGIKKTDEGTYRCEGRILAR 179
Query: 195 TEYS 198
E +
Sbjct: 180 GEIN 183
Score = 80.3 bits (198), Expect = 2e-18
Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 2/96 (2%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPP-PKISWIREMLPVDTSRNPRYNLLTSGAP-G 170
Q+ PS + + + C +G+ ISW + R +++ +
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 171 ALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
L I N+ +D G Y+CV E GT+ + + +
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF 98
Score = 46.8 bits (111), Expect = 1e-06
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 27 PGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE--MLPVDTSRNPRYNLLTSG 84
P Q ++ + + L C A G P P +SW ++ + + + ++
Sbjct: 194 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS 253
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 118 bits (297), Expect = 1e-32
Identities = 43/208 (20%), Positives = 76/208 (36%), Gaps = 33/208 (15%)
Query: 17 LSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNP 76
L V PP F I + +++V+ T C G+P K+ W ++ + S
Sbjct: 93 LGVQE----PPRF--IKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKF 146
Query: 77 RYNLLTSGAP-----------GTYIKIKPNLF------SPLSVYSADKIPPGFPQITEAP 119
R + + S A G Y N + L V P + P
Sbjct: 147 RMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEP-------PVFRKKP 199
Query: 120 STKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIE 179
L C G PP ++SW ++ + + +Y +++ ++ I N
Sbjct: 200 HPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSG--KKYKIMSENFLTSIHILNVDS 257
Query: 180 EDQGKYECVAENEVGTEYSPSTMLYVKG 207
D G+Y+C A N+VG+ + + +K
Sbjct: 258 ADIGEYQCKASNDVGSY-TCVGSITLKA 284
Score = 115 bits (289), Expect = 1e-31
Identities = 44/194 (22%), Positives = 75/194 (38%), Gaps = 26/194 (13%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAP--- 86
P P + + + + C +G P KI+W ++ + N + L+ + A
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTV 65
Query: 87 --------GTYIKIKPNLF------SPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVL 132
G Y N+ + L V PP F I + +++V+ T
Sbjct: 66 LKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE----PPRF--IKKLEPSRIVKQDEHTRY 119
Query: 133 HCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENE 192
C G+P K+ W ++ + S ++ + + L++ N ED G Y C A N
Sbjct: 120 ECKIGGSPEIKVLWYKDETEIQES--SKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNA 177
Query: 193 VGTEYSPSTMLYVK 206
G+ S ST L VK
Sbjct: 178 AGSASS-STSLKVK 190
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 115 bits (289), Expect = 1e-32
Identities = 38/194 (19%), Positives = 77/194 (39%), Gaps = 25/194 (12%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKIS--WIREMLPVDTSRNPRYN--LLTSGA 85
P+I + + + L C+ + + + W + + + +R N +
Sbjct: 4 PRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKP 63
Query: 86 P----GTYIKIKPNLFSP-----LSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSA 136
G Y + + +P + V +A P IT ++ +++C +
Sbjct: 64 RAEDSGEYHCVYHFVSAPKANATIEVKAA-------PDITGHKRSENKNEGQDAMMYCKS 116
Query: 137 SGNPPPKISWIRE---MLPVDTSRNPRYNLLTSGAPGALQITN-SIEEDQGKYECVAENE 192
G P P+ W ++ + ++ + R+ ++ L I N I ED G+YEC A N
Sbjct: 117 VGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNS 176
Query: 193 VGTEYSPSTMLYVK 206
+G+ ST+L V+
Sbjct: 177 IGSASV-STVLRVR 189
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 115 bits (289), Expect = 2e-32
Identities = 45/201 (22%), Positives = 69/201 (34%), Gaps = 37/201 (18%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAP--- 86
+ + E C ASG+P P ISW R + N +Y L S
Sbjct: 5 ISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLI--EENEKYILKGSNTELTV 62
Query: 87 --------GTYI--------KIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTT 130
G Y+ + + F L V+ P I + + E +
Sbjct: 63 RNIINSDGGPYVCRATNKAGEDEKQAF--LQVFVQ-------PHIIQLKNETTYE-NGQV 112
Query: 131 VLHCSASGNPPPKISWIRE-----MLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKY 185
L C A G P P+I+W R D S + R + +L I + D G+Y
Sbjct: 113 TLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRY 172
Query: 186 ECVAENEVGTEYSPSTMLYVK 206
+C A + +G S L ++
Sbjct: 173 DCEAASRIGGHQK-SMYLDIE 192
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 114 bits (288), Expect = 2e-32
Identities = 43/190 (22%), Positives = 64/190 (33%), Gaps = 20/190 (10%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGA---- 85
E S + + + C S +P P +SW+ V T + R+ +L +
Sbjct: 3 LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQIL 62
Query: 86 ------PGTYI----KIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCS 135
G Y + +PP + + E C
Sbjct: 63 NINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAI-SMPQKSFNATAERGEEMTFSCR 121
Query: 136 ASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGT 195
ASG+P P ISW R ++ N +Y L S L + N I D G Y C A N+ G
Sbjct: 122 ASGSPEPAISWFRNGKLIEE--NEKYILKGSN--TELTVRNIINSDGGPYVCRATNKAGE 177
Query: 196 EYSPSTMLYV 205
+ L V
Sbjct: 178 DEK-QAFLQV 186
Score = 46.7 bits (111), Expect = 7e-07
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 25 IPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSG 84
+PP + + E C ASG+P P ISW R ++ N +Y L S
Sbjct: 95 VPPAI-SMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEE--NEKYILKGSN 151
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 119 bits (299), Expect = 4e-32
Identities = 41/195 (21%), Positives = 67/195 (34%), Gaps = 21/195 (10%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPP-PKISWIREMLPVDTSRNPRYNLLTSGA--- 85
PS V +L+CSA + P I W ++ L + + R L +G+
Sbjct: 22 LHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLI 81
Query: 86 ------------PGTYI-KIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVL 132
G Y + + +A + G + + + T +L
Sbjct: 82 QNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLL 141
Query: 133 HCSASGNPPPKISWIREMLPVDTS-RNPRYNLLTSGAPGALQITNSIEEDQGKYECVAEN 191
C G+P P I W + ++ + R +L SGA LQI+ D G Y C A N
Sbjct: 142 KCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGA---LQISRLQPGDSGVYRCSARN 198
Query: 192 EVGTEYSPSTMLYVK 206
T + +
Sbjct: 199 PASTRTGNEAEVRIL 213
Score = 118 bits (296), Expect = 1e-31
Identities = 50/206 (24%), Positives = 77/206 (37%), Gaps = 31/206 (15%)
Query: 17 LSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNP 76
+ + S + + PS + VL C SG PPP +W+R + R+
Sbjct: 210 VRILSDPGLHRQ-LYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQ-LRSK 267
Query: 77 RYNLLTSGA----------PGTYIKIKPNLF------SPLSVYSADKIPPGFPQITEAPS 120
+Y+LL GTY + + L+V P PS
Sbjct: 268 KYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVP-------PWFLNHPS 320
Query: 121 TKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEE 180
S C+ SG P P ++W++ V S + ++ L+I ++
Sbjct: 321 NLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPS--DYFQIVGG---SNLRILGVVKS 375
Query: 181 DQGKYECVAENEVGTEYSPSTMLYVK 206
D+G Y+CVAENE G S S L V
Sbjct: 376 DEGFYQCVAENEAGNAQS-SAQLIVP 400
Score = 115 bits (289), Expect = 9e-31
Identities = 43/195 (22%), Positives = 71/195 (36%), Gaps = 24/195 (12%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTS-RNPRYNLLTSGA--- 85
+ + + T +L C G+P P I W + ++ + R +L SGA
Sbjct: 122 LRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQI 181
Query: 86 -------PGTY-------IKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTV 131
G Y + + + + S + + PS + V
Sbjct: 182 SRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQ-LYFLQRPSNVIAIEGKDAV 240
Query: 132 LHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAEN 191
L C SG PPP +W+R + R+ +Y+LL L I+N ++D G Y CV
Sbjct: 241 LECCVSGYPPPSFTWLRGEEVIQ-LRSKKYSLLGG---SNLLISNVTDDDSGTYTCVVTY 296
Query: 192 EVGTEYSPSTMLYVK 206
+ + S L V
Sbjct: 297 KNENISA-SAELTVL 310
Score = 72.2 bits (177), Expect = 4e-15
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 10/102 (9%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPP-PKISWIREMLPVDTSRNPRYNLLTSGAPGA 171
PS V +L+CSA + P I W ++ L + + R L + G+
Sbjct: 22 LHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPN---GS 78
Query: 172 LQITN-----SIEEDQGKYECVAE-NEVGTEYSPSTMLYVKG 207
L I N + D+G Y+C A + G+ S + + V G
Sbjct: 79 LLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAG 120
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 114 bits (286), Expect = 6e-32
Identities = 42/200 (21%), Positives = 66/200 (33%), Gaps = 34/200 (17%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTY 89
P T+ + VV T SG P P++SW R+ + TS P + S
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK- 64
Query: 90 IKIKPNLFSPLSVYSAD-----------------------KIPPGFPQITEAPSTKVVEI 126
+ I +V A+ K P + + V
Sbjct: 65 LTIP-------AVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQ 117
Query: 127 SHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYE 186
L +G P P + + R+ + +S + + G +L I + ED G Y
Sbjct: 118 GSQVRLQVRVTGIPTPVVKFYRDGAEIQSS--LDFQISQEGDLYSLLIAEAYPEDSGTYS 175
Query: 187 CVAENEVGTEYSPSTMLYVK 206
A N VG S + L V+
Sbjct: 176 VNATNSVGRATS-TAELLVQ 194
Score = 89.8 bits (223), Expect = 1e-22
Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 1/98 (1%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGAL 172
P T+ + VV T SG P P++SW R+ + TS P + S L
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKL 65
Query: 173 QITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQV 210
I + + G+Y A N G S + L VK
Sbjct: 66 TIPAVTKANSGRYSLKATNGSGQATS-TAELLVKAETA 102
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 116 bits (292), Expect = 6e-32
Identities = 44/205 (21%), Positives = 67/205 (32%), Gaps = 27/205 (13%)
Query: 17 LSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNP 76
L +Y E S + + + C S +P P +SW+ V T +
Sbjct: 93 LEIYQK-------LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDN 145
Query: 77 RYNLLTSGA----------PGTYI----KIKPNLFSPLSVYSADKIPPGFPQITEAPSTK 122
R+ +L + G Y + +PP + +
Sbjct: 146 RFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAI-SMPQKSFNA 204
Query: 123 VVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQ 182
E C ASG+P P ISW R ++ + +Y L S L + N I D
Sbjct: 205 TAERGEEMTFSCRASGSPEPAISWFRNGKLIEENE--KYILKGSN--TELTVRNIINSDG 260
Query: 183 GKYECVAENEVGTEYSPSTMLYVKG 207
G Y C A N+ G + L V
Sbjct: 261 GPYVCRATNKAGEDEK-QAFLQVFV 284
Score = 113 bits (284), Expect = 1e-30
Identities = 35/199 (17%), Positives = 63/199 (31%), Gaps = 32/199 (16%)
Query: 27 PGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAP 86
Q+T + S + + + C+A G P + + + + R + G
Sbjct: 2 MALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIIS--TQRVVVQKEGVR 59
Query: 87 -------------GTYIKIKPNLFSP-------LSVYSADKIPPGFPQITEAPSTKVVEI 126
G Y + L +Y E S + +
Sbjct: 60 SRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQK-------LTFREVVSPQEFKQ 112
Query: 127 SHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYE 186
+ C S +P P +SW+ V T + R+ +L + LQI N + D+G Y
Sbjct: 113 GEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN---NNLQILNINKSDEGIYR 169
Query: 187 CVAENEVGTEYSPSTMLYV 205
C E E ++ +
Sbjct: 170 CEGRVEARGEIDFRDIIVI 188
Score = 85.3 bits (211), Expect = 3e-20
Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 2/97 (2%)
Query: 110 PGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAP 169
Q+T + S + + + C+A G P + + + + R + G
Sbjct: 2 MALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIIS--TQRVVVQKEGVR 59
Query: 170 GALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
L I N+ ED G Y C A + G + +L +
Sbjct: 60 SRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIY 96
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 117 bits (296), Expect = 4e-31
Identities = 36/198 (18%), Positives = 60/198 (30%), Gaps = 24/198 (12%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAP--- 86
P E I L C G P +I+W +E + ++ + + A
Sbjct: 6 PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVI 65
Query: 87 --------GTYIKIKPNLF------SPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVL 132
G Y N + L + K P +
Sbjct: 66 NKVDHSDVGEYTCKAENSVGAVASSAVLVI----KERKLPPSFARKLKDVHETLGFPVAF 121
Query: 133 HCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENE 192
C +G+ P ++SW ++ + LQI + + G+Y C A N
Sbjct: 122 ECRINGSEPLQVSWYKDGELLKDD--ANLQTSFIHNVATLQILQTDQSHVGQYNCSASNP 179
Query: 193 VGTEYSPSTMLYVKGTQV 210
+GT S S L + +V
Sbjct: 180 LGTA-SSSAKLTLSEHEV 196
Score = 114 bits (286), Expect = 1e-29
Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 32/197 (16%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTY 89
P + P L C G PP ++SW ++ + + +Y +++ +
Sbjct: 385 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSG--KKYKIMSENFLTS- 441
Query: 90 IKIKP--------------------NLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHT 129
I I +++ + P+ + S +
Sbjct: 442 IHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAP-------PRFVKKLSDISTVVGEE 494
Query: 130 TVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVA 189
L + G P ++W ++ + + + S LQ + + + GKY C
Sbjct: 495 VQLQATIEGAEPISVAWFKDKGEIVRE-SDNIWISYSENIATLQFSRAEPANAGKYTCQI 553
Query: 190 ENEVGTEYSPSTMLYVK 206
+NE GT+ L V
Sbjct: 554 KNEAGTQ-ECFATLSVL 569
Score = 112 bits (281), Expect = 6e-29
Identities = 39/210 (18%), Positives = 73/210 (34%), Gaps = 39/210 (18%)
Query: 17 LSVYSADKIPPGFPQITEAPS-TKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRN 75
L V P+ + +++V+ T C G+P K+ W ++ + S
Sbjct: 285 LGVQEP-------PRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSK 337
Query: 76 PRYNLLTSGA-----------PGTYI--------KIKPNLFSPLSVYSADKIPPGFPQIT 116
R + + S A G Y + L V P
Sbjct: 338 FRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTS--LKVKEP-------PVFR 388
Query: 117 EAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITN 176
+ P L C G PP ++SW ++ + + +Y +++ ++ I N
Sbjct: 389 KKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSG--KKYKIMSENFLTSIHILN 446
Query: 177 SIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
D G+Y+C A N+VG++ + +K
Sbjct: 447 VDSADIGEYQCKASNDVGSDTC-VGSITLK 475
Score = 110 bits (277), Expect = 2e-28
Identities = 31/199 (15%), Positives = 62/199 (31%), Gaps = 24/199 (12%)
Query: 26 PPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGA 85
P + C +G+ P ++SW ++ + N + + + + A
Sbjct: 98 RKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVA 157
Query: 86 -----------PGTYI------KIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISH 128
G Y + + L++ P P + + +
Sbjct: 158 TLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSE----HEVPPFFDLKPVSVDLALGE 213
Query: 129 TTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECV 188
+ C +G P KI+W ++ + Y + L + + D G+Y C
Sbjct: 214 SGTFKCHVTGTAPIKITWAKDNREI--RPGGNYKMTLVENTATLTVLKVTKGDAGQYTCY 271
Query: 189 AENEVGTEYSPSTMLYVKG 207
A N G + S L V+
Sbjct: 272 ASNVAGKDSC-SAQLGVQE 289
Score = 109 bits (274), Expect = 4e-28
Identities = 43/224 (19%), Positives = 80/224 (35%), Gaps = 32/224 (14%)
Query: 1 TCIGTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPK 60
C + + + L++ P P + + + + C +G P K
Sbjct: 173 NCSASNPLGTASSSAKLTLSE----HEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIK 228
Query: 61 ISWIREMLPVDTSRNPRYNLLTSGA-----------PGTYIKIKPNLF------SPLSVY 103
I+W ++ + N + L+ + A G Y N+ + L V
Sbjct: 229 ITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ 288
Query: 104 SADKIPPGFPQITEAPS-TKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYN 162
P+ + +++V+ T C G+P K+ W ++ + S ++
Sbjct: 289 EP-------PRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQES--SKFR 339
Query: 163 LLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
+ + L++ N ED G Y C A N G+ S ST L VK
Sbjct: 340 MSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASS-STSLKVK 382
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 110 bits (276), Expect = 2e-30
Identities = 35/198 (17%), Positives = 61/198 (30%), Gaps = 31/198 (15%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTY 89
P I + ++ L C G P P I W R + SR +Y + + G T
Sbjct: 8 PGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSR--KYKMSSDGRTHT- 64
Query: 90 IKIKPNLFS--------------------PLSVYSADKIPPGFPQITEAPSTKVVEISHT 129
+ + L + + + PG+P + T
Sbjct: 65 LTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPL----KEKYYGAVGST 120
Query: 130 TVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITN-SIEEDQGKYECV 188
LH G P P ++W + S + + L + N + GKY+
Sbjct: 121 LRLHVMYIGRPVPAMTWFHGQKLLQNS--ENITIENTEHYTHLVMKNVQRKTHAGKYKVQ 178
Query: 189 AENEVGTEYSPSTMLYVK 206
N GT + + ++
Sbjct: 179 LSNVFGTVDA-ILDVEIQ 195
Score = 50.1 bits (120), Expect = 5e-08
Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 6/68 (8%)
Query: 17 LSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNP 76
L + + + PG+P + T LH G P P ++W + S
Sbjct: 95 LLLQATPQFHPGYPL----KEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNS--E 148
Query: 77 RYNLLTSG 84
+ +
Sbjct: 149 NITIENTE 156
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 109 bits (274), Expect = 2e-30
Identities = 34/191 (17%), Positives = 52/191 (27%), Gaps = 25/191 (13%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAP--- 86
++ AP V L+CS G P I W+++ V +
Sbjct: 3 LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFL 62
Query: 87 ----------GTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSA 136
G Y + G P T P V + L C A
Sbjct: 63 SLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEA 122
Query: 137 SGNPPP-KISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGT 195
G P P I W R + AP + + + C A N G
Sbjct: 123 VGPPEPVTIVWWRGTTKIGGP-----------APSPSVLNVTGVTQSTMFSCEAHNLKGL 171
Query: 196 EYSPSTMLYVK 206
S + ++++
Sbjct: 172 ASSRTATVHLQ 182
Score = 103 bits (258), Expect = 5e-28
Identities = 24/95 (25%), Positives = 36/95 (37%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGAL 172
++ AP V L+CS G P I W+++ V + G L
Sbjct: 3 LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFL 62
Query: 173 QITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207
+ + D G+Y C E+ TE S L V+G
Sbjct: 63 SLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG 97
Score = 45.6 bits (108), Expect = 2e-06
Identities = 16/65 (24%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Query: 28 GFPQITEAPSTKVVEISHTTVLHCSASGNPPP-KISWIREMLPVDTSRNPRYNLLTSGA- 85
G P T P V + L C A G P P I W R + L +G
Sbjct: 97 GVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVT 156
Query: 86 -PGTY 89
+
Sbjct: 157 QSTMF 161
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 109 bits (274), Expect = 3e-30
Identities = 49/200 (24%), Positives = 69/200 (34%), Gaps = 29/200 (14%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPP--KISWIREMLPVDTSRNP-RYNLLTSGA- 85
P E V+ VL C + P W+ PV + + R+ T+G
Sbjct: 9 PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNL 68
Query: 86 ---------PGTYI---------KIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEIS 127
G Y K + F PL P I +
Sbjct: 69 YIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMG 128
Query: 128 HTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYEC 187
L C A GNP P I W + + P+ ++ + TSG L+I N ED+G YEC
Sbjct: 129 QNVTLECFALGNPVPDIRWRKVLEPMPSTA----EISTSG--AVLKIFNIQLEDEGIYEC 182
Query: 188 VAENEVGTEYSPSTMLYVKG 207
AEN G + +YV+
Sbjct: 183 EAENIRGKDKH-QARIYVQA 201
Score = 49.9 bits (119), Expect = 6e-08
Identities = 15/61 (24%), Positives = 21/61 (34%)
Query: 14 FSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTS 73
F PL P I + L C A GNP P I W + + P+ ++
Sbjct: 98 FIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPST 157
Query: 74 R 74
Sbjct: 158 A 158
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 113 bits (283), Expect = 5e-30
Identities = 50/218 (22%), Positives = 80/218 (36%), Gaps = 29/218 (13%)
Query: 3 IGTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKIS 62
I K + FS LS+ + D + P+ L C A GNP P+I
Sbjct: 181 IDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIK 240
Query: 63 WIRE-MLPVDTSRNPRYNLLTSGAP----GTYI--------KIKPNLFSPLSVYSADKIP 109
W + + L GTY + + +++
Sbjct: 241 WRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGR--IIIHAQ---- 294
Query: 110 PGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAP 169
P + + +I C ASG P P + W+R+ P+ + R + +
Sbjct: 295 ---PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPL--ASQNRIEV----SG 345
Query: 170 GALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207
G L+ + + ED G Y+CVAEN+ GT Y+ S L V+
Sbjct: 346 GELRFSKLVLEDSGMYQCVAENKHGTVYA-SAELTVQA 382
Score = 98.4 bits (245), Expect = 2e-24
Identities = 34/204 (16%), Positives = 55/204 (26%), Gaps = 29/204 (14%)
Query: 30 PQITEAPSTKVVEISH---TTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAP 86
P E P+ + L C A NPP W + + RY L+
Sbjct: 5 PVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV----A 60
Query: 87 GTYIKIKP--------------NLFSPLSVYSADKIPPGFPQI-TEAPSTKVVEISHTTV 131
G + P N + A + E + +
Sbjct: 61 GDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVM 120
Query: 132 LHCSA-SGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAE 190
CS P W+ P + R + + G L I + D G Y C A
Sbjct: 121 FTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTT--GNLYIAKTEASDLGNYSCFAT 178
Query: 191 NEVG----TEYSPSTMLYVKGTQV 210
+ + + +S + L +
Sbjct: 179 SHIDFITKSVFSKFSQLSLAAEDA 202
Score = 96.9 bits (241), Expect = 5e-24
Identities = 43/204 (21%), Positives = 63/204 (30%), Gaps = 34/204 (16%)
Query: 26 PPGFPQITEAPSTKVVEISHTTVLHCSA-SGNPPPKISWIREMLPVD-TSRNPRYNLLTS 83
F E + + CS P W+ P + R+ T+
Sbjct: 100 LQEFS--AEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTT 157
Query: 84 GA----------PGTYI-----------KIKPNLFSPLSVYSADKIPPGFPQITEAPSTK 122
G G Y K + FS LS+ + D + P+
Sbjct: 158 GNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADT 217
Query: 123 VVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQ 182
L C A GNP P+I W + + L+S L I N ED+
Sbjct: 218 YALTGQMVTLECFAFGNPVPQIKWRKL------DGSQTSKWLSSE--PLLHIQNVDFEDE 269
Query: 183 GKYECVAENEVGTEYSPSTMLYVK 206
G YEC AEN G + + + +
Sbjct: 270 GTYECEAENIKGRD-TYQGRIIIH 292
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 112 bits (282), Expect = 1e-29
Identities = 44/225 (19%), Positives = 81/225 (36%), Gaps = 31/225 (13%)
Query: 1 TCIGTYI---KIKPNLFSPLSVYSADKI---PPGFPQITEAPSTKVVEISHTTVLHCSAS 54
+C + I+ L V + + P F S+++V +L C AS
Sbjct: 188 SCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIAS 247
Query: 55 GNPPPKISWIRE--MLPVDTSRNPRYN--LLTSGAP----GTYIKIKPNLF------SPL 100
G P P I+W ++ LP D ++ +N L + G Y + N +
Sbjct: 248 GVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISV 307
Query: 101 SVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPR 160
V +A P + P ++ L C A+GNP P + W+ P+ ++
Sbjct: 308 RVKAA-------PYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNP 360
Query: 161 YNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205
+ + ++ + Y+C NE G + + + V
Sbjct: 361 NREVAG---DTIIFRDTQISSRAVYQCNTSNEHGYLLA-NAFVSV 401
Score = 104 bits (260), Expect = 2e-26
Identities = 52/207 (25%), Positives = 81/207 (39%), Gaps = 37/207 (17%)
Query: 26 PPGFPQITEAPSTKVVEISHTTVLHCSA-SGNPPPKISWIREMLPVDTSRNPRYNLLTSG 84
P +P E VV+ L C+ G P P I W+ + T + R + +G
Sbjct: 115 SPLWP--KENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQ-DKRVSQGHNG 171
Query: 85 -----------APGTYI---------KIKPNLFSPLSVYSADKI---PPGFPQITEAPST 121
Y I+ L V + + P F S+
Sbjct: 172 DLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASS 231
Query: 122 KVVEISHTTVLHCSASGNPPPKISWIRE--MLPVDTSRNPRYNLLTSGAPGALQITNSIE 179
++V +L C ASG P P I+W ++ LP D ++ +N AL+ITN E
Sbjct: 232 QMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFN-------KALRITNVSE 284
Query: 180 EDQGKYECVAENEVGTEYSPSTMLYVK 206
ED G+Y C+A N++G+ + + VK
Sbjct: 285 EDSGEYFCLASNKMGSIRH-TISVRVK 310
Score = 98.0 bits (244), Expect = 2e-24
Identities = 40/207 (19%), Positives = 66/207 (31%), Gaps = 40/207 (19%)
Query: 26 PPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGA 85
PP ++ +V+ ++ C A GNP P W R + +++PR ++
Sbjct: 16 PPTI--TKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRS- 72
Query: 86 PGTYIKIKPNLFSP------------------------LSVYSADKIPPGFPQITEAPST 121
GT + + P L V + P E
Sbjct: 73 -GTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWP------KENLDP 125
Query: 122 KVVEISHTTVLHCSA-SGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEE 180
VV+ L C+ G P P I W+ + T + R + +G L +N + +
Sbjct: 126 VVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQ-DKRVSQGHNGD---LYFSNVMLQ 181
Query: 181 D-QGKYECVAENEVGTEYSPSTMLYVK 206
D Q Y C A +K
Sbjct: 182 DMQTDYSCNARFHFTHTIQQKNPFTLK 208
Score = 83.4 bits (206), Expect = 4e-19
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 8/103 (7%)
Query: 109 PPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGA 168
PP ++ +V+ ++ C A GNP P W R + +++PR ++
Sbjct: 16 PPTI--TKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRS- 72
Query: 169 PGALQITNSI----EEDQGKYECVAENEVGTEYSPSTMLYVKG 207
G L I EE +G+Y+C A N+ GT S L V
Sbjct: 73 -GTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSK 114
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 106 bits (267), Expect = 4e-29
Identities = 37/199 (18%), Positives = 63/199 (31%), Gaps = 29/199 (14%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTY 89
P E V L C +G+P P + W R+ + +Y +
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIAD-GLKYRIQEFKGGYHQ 63
Query: 90 IKIKPNLFSP---------------------LSVYSADKIPPGFPQITEAPSTKVVEISH 128
+ I ++ L V KI P+ E
Sbjct: 64 LIIA-SVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHL--PKTLEGMGAVHALRGE 120
Query: 129 TTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIE-EDQGKYEC 187
+ SG P P I+W + +D + Y ++ + + +L N +E +D G Y
Sbjct: 121 VVSIKIPFSGKPDPVITWQKGQDLIDNNG--HYQVIVTRSFTSLVFPNGVERKDAGFYVV 178
Query: 188 VAENEVGTEYSPSTMLYVK 206
A+N G + + L V
Sbjct: 179 CAKNRFGIDQK-TVELDVA 196
Score = 51.3 bits (123), Expect = 2e-08
Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 4/78 (5%)
Query: 17 LSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNP 76
L V KI P+ E + SG P P I+W + +D +
Sbjct: 94 LEVEVPAKIHL--PKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNG-- 149
Query: 77 RYNLLTSGAPGTYIKIKP 94
Y ++ + + + +
Sbjct: 150 HYQVIVTRSFTSLVFPNG 167
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 110 bits (276), Expect = 6e-29
Identities = 32/209 (15%), Positives = 58/209 (27%), Gaps = 29/209 (13%)
Query: 27 PGFPQITEAPSTKVVEISHTTVLHCS-ASGNPPPKISWIREMLPVDTSRNP-----RYNL 80
K L C + P P I+W + + D + + R
Sbjct: 98 TYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITA 157
Query: 81 LTSGA-------------PGTYI----------KIKPNLFSPLSVYSADKIPPGFPQITE 117
G Y+ ++ + V + G P
Sbjct: 158 GPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY 217
Query: 118 APSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNS 177
+ + T+++C NP ++ + V+ + R + L +
Sbjct: 218 VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTT 277
Query: 178 IEEDQGKYECVAENEVGTEYSPSTMLYVK 206
+ ED+G Y C +N VG S L V
Sbjct: 278 LPEDEGVYTCEVDNGVGKPQKHSLKLTVV 306
Score = 108 bits (272), Expect = 3e-28
Identities = 39/208 (18%), Positives = 66/208 (31%), Gaps = 25/208 (12%)
Query: 15 SPLSVYSADKIPPGF---PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVD 71
+ K G+ P + + T+++C NP ++ + V+
Sbjct: 195 VEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVN 254
Query: 72 TS---RNPRYNLLTSGA----------PGTYIKIKPNLFSPLSVYSADKIPPGFPQITEA 118
+ R R+N + G Y N +S P+ +
Sbjct: 255 GNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQK 314
Query: 119 P-STKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNS 177
P VV+ + C +G P P + W P+ R + L I
Sbjct: 315 PEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLS---GGRATVT----DSGLVIKGV 367
Query: 178 IEEDQGKYECVAENEVGTEYSPSTMLYV 205
D+G Y C A NE G +Y T++ V
Sbjct: 368 KNGDKGYYGCRATNEHGDKYF-ETLVQV 394
Score = 97.7 bits (243), Expect = 3e-24
Identities = 38/202 (18%), Positives = 58/202 (28%), Gaps = 23/202 (11%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPP-KISWIREMLPVDTSRNPRYNLLTSGA--- 85
P + + P+ + ++ TVL C GN K SW ++ + + G+
Sbjct: 7 PVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVF 66
Query: 86 -------PGTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCS-AS 137
G Y S K L C +
Sbjct: 67 LRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPN 126
Query: 138 GNPPPKISWIREMLPVDTSRNP-----RYNLLTSGAPGALQITNSIEED---QGKYECVA 189
P P I+W + + D + + R G L T +ED KY C A
Sbjct: 127 AYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGN---LYFTIVTKEDVSDIYKYVCTA 183
Query: 190 ENEVGTEYSPSTMLYVKGTQVD 211
+N E +KG D
Sbjct: 184 KNAAVDEEVVLVEYEIKGVTKD 205
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 108 bits (271), Expect = 3e-28
Identities = 54/209 (25%), Positives = 77/209 (36%), Gaps = 33/209 (15%)
Query: 14 FSPLSVYSADKIPPGFPQI-TEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE--MLPV 70
+PL + + + P+I + P T E T L C A GNP P I W R
Sbjct: 189 PTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIA 248
Query: 71 DTSRNPRYN--LLTSGAP----GTYI--------KIKPNLFSPLSVYSADKIPPGFPQIT 116
+R + N L G+Y K L+ Y+ P
Sbjct: 249 RKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQ--LTFYAQ-------PNWV 299
Query: 117 EAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITN 176
+ + V + + C A+G P P W++ P+ T R + G L IT
Sbjct: 300 QIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLT--RDRIQI----EQGTLNITI 353
Query: 177 SIEEDQGKYECVAENEVGTEYSPSTMLYV 205
D G Y+CVAEN+ G +S S L V
Sbjct: 354 VNLSDAGMYQCVAENKHGVIFS-SAELSV 381
Score = 102 bits (256), Expect = 4e-26
Identities = 42/196 (21%), Positives = 56/196 (28%), Gaps = 27/196 (13%)
Query: 30 PQITEAPSTKVVEIS---HTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAP 86
P + PS + + L C GNP P I W VD + RY++
Sbjct: 6 PVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSV----VD 61
Query: 87 GTYIKIKPNLFSPLSVY--------------SADKIPPGFPQI-TEAPSTKVVEISHTTV 131
G+ + PN Y A T ST V V
Sbjct: 62 GSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMV 121
Query: 132 LHCSA-SGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAE 190
L C + +WI P N R+ + G L I + D G Y CV
Sbjct: 122 LLCGPPPHSGELSYAWIFNEYPSYQD-NRRFVSQET---GNLYIAKVEKSDVGNYTCVVT 177
Query: 191 NEVGTEYSPSTMLYVK 206
N V +
Sbjct: 178 NTVTNHKVLGPPTPLI 193
Score = 100 bits (251), Expect = 2e-25
Identities = 52/204 (25%), Positives = 67/204 (32%), Gaps = 34/204 (16%)
Query: 26 PPGFPQITEAPSTKVVEISHTTVLHCSA-SGNPPPKISWIREMLPVDTSRNPRYNLLTSG 84
F T ST V VL C + +WI P N R+ +G
Sbjct: 101 LENFK--TRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQD-NRRFVSQETG 157
Query: 85 A----------PGTYI---------KIKPNLFSPLSVYSADKIPPGFPQI-TEAPSTKVV 124
G Y +PL + + + P+I + P T
Sbjct: 158 NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPA 217
Query: 125 EISHTTVLHCSASGNPPPKISWIRE--MLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQ 182
E T L C A GNP P I W R +R + N G L+I N +ED
Sbjct: 218 EKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSN-------GILEIPNFQQEDA 270
Query: 183 GKYECVAENEVGTEYSPSTMLYVK 206
G YECVAEN G + L
Sbjct: 271 GSYECVAENSRGKNVA-KGQLTFY 293
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 102 bits (256), Expect = 2e-27
Identities = 38/217 (17%), Positives = 67/217 (30%), Gaps = 42/217 (19%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAP--- 86
+ A S V + + L C+ SG P++ W + A
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 87 ----------------GTYI--------KIKPNLFSPLSVYSADKIPPGFPQITEAPSTK 122
G Y + + L+V P
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVP-------PSKPTISVPS 114
Query: 123 VVEISHTTVLHCSA-SGNPPPKISWIREMLPVDTSRNPRYNLLTSGAP------GALQIT 175
V I + VL CS G+PP + SW ++ + + T+ + + + G L
Sbjct: 115 SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFD 174
Query: 176 NSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
D G+Y C A+N GT S ++ ++++
Sbjct: 175 PVTAFDSGEYYCQAQNGYGTAMR-SEAAHMDAVELNV 210
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 106 bits (265), Expect = 3e-27
Identities = 41/203 (20%), Positives = 66/203 (32%), Gaps = 35/203 (17%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR-----EMLPVDTSRNPRYNLLTSG 84
P I + + E + L C A G P P+I+W R D S + R +
Sbjct: 2 PHIIQLKNETTYE-NGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 85 APGTYIKIKPNLFS--------------------PLSVYSADKIPPGFPQITEAPSTKVV 124
+ IK S L + A P+ +
Sbjct: 61 GSSSLH-IKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYA-------PKFISNQTIYYS 112
Query: 125 EISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGK 184
+ + C NPP I W R+ L + ++G L+I + + D G+
Sbjct: 113 WEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGR 172
Query: 185 YECVAENEVGTEYSPSTMLYVKG 207
Y C A N +GT + +L +
Sbjct: 173 YNCTATNHIGTRFQ-EYILALAD 194
Score = 57.5 bits (139), Expect = 4e-10
Identities = 29/192 (15%), Positives = 55/192 (28%), Gaps = 28/192 (14%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTY 89
P+ + + + C NPP I W R+ L + ++G
Sbjct: 101 PKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMI- 159
Query: 90 IKIKPNLFSPLSVY------SADKI----------PPGFPQITEAPSTKVVEISHTTVL- 132
++I P + Y P P + ++E+S TT
Sbjct: 160 LEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVK-----IIELSQTTAKV 214
Query: 133 --HCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAE 190
+ S P + ++ V + + + G + + N + A
Sbjct: 215 SFNKPDSHGGVPIHHYQVDVKEVASEI--WKIVRSHGVQTMVVLNNLEPNTTYEIRVAAV 272
Query: 191 NEVGT-EYSPST 201
N G +YS
Sbjct: 273 NGKGQGDYSKIE 284
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 104 bits (261), Expect = 8e-27
Identities = 40/203 (19%), Positives = 66/203 (32%), Gaps = 27/203 (13%)
Query: 30 PQITEAPSTKVVEISHTTVLHC---SASGNPPPKISWIREMLPVDTSR---NPRYNLLTS 83
+ + V ++ V+ C S + +SW + + +Y +L S
Sbjct: 104 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS 163
Query: 84 G-----------APGTYI---------KIKPNLFSPLSVYSADKIPPGFPQITEAPSTKV 123
G +Y + + + V +
Sbjct: 164 GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLE 223
Query: 124 VEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQG 183
+ ++HT L C A G P P W + + + N G L I +++ ED G
Sbjct: 224 LMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSG 283
Query: 184 KYECVAENEVGTEYSPSTMLYVK 206
KY CV N VG E S T+L V
Sbjct: 284 KYLCVVNNSVGGE-SVETVLTVT 305
Score = 103 bits (257), Expect = 3e-26
Identities = 37/211 (17%), Positives = 66/211 (31%), Gaps = 39/211 (18%)
Query: 14 FSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTS 73
V + + ++HT L C A G P P W + +
Sbjct: 197 TKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRK 256
Query: 74 RNPRYNLLTSGAP-------------GTYIKIKPNLF------SPLSVYSADKIPPGFPQ 114
+ N G Y+ + N + L+V +
Sbjct: 257 QAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAP-------LS 309
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQI 174
P T+ V+ V C +GNP +SW+++ + S L+I
Sbjct: 310 AKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS------------ESVLRI 357
Query: 175 TNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205
+ +ED+G Y+C N+ + + S L +
Sbjct: 358 ESVKKEDKGMYQCFVRNDRESAEA-SAELKL 387
Score = 84.2 bits (208), Expect = 2e-19
Identities = 33/193 (17%), Positives = 55/193 (28%), Gaps = 21/193 (10%)
Query: 30 PQITEAPSTKV-VEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGA--- 85
P + P+ ++ S + C ASGNP P+I WIR + + G
Sbjct: 4 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVF 63
Query: 86 -------------PGTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVL 132
Y + N F + + + V ++ V+
Sbjct: 64 PPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVI 123
Query: 133 HC---SASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEED-QGKYECV 188
C S + +SW + G L I ED Y+C
Sbjct: 124 KCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCR 183
Query: 189 AENEVGTEYSPST 201
++ + E S
Sbjct: 184 TKHRLTGETRLSA 196
Score = 69.6 bits (170), Expect = 3e-14
Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 10/100 (10%)
Query: 113 PQITEAPSTKV-VEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGA 171
P + P+ ++ S + C ASGNP P+I WIR + + G
Sbjct: 4 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSD---GK 60
Query: 172 LQITN------SIEEDQGKYECVAENEVGTEYSPSTMLYV 205
L E Y C+A N+ G+ S +
Sbjct: 61 LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRA 100
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 105 bits (263), Expect = 2e-26
Identities = 45/193 (23%), Positives = 77/193 (39%), Gaps = 25/193 (12%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNL----LTSGA 85
P T+ V+ V C +GNP +SW+++ + S + L +
Sbjct: 344 LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES---VLRIESVKKED 400
Query: 86 PGTYI--------KIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSAS 137
G Y + + + L + + P P I +A + +E + L C A
Sbjct: 401 KGMYQCFVRNDRESAEAS--AELKL--GGRFDP--PVIRQAFQEETMEPGPSVFLKCVAG 454
Query: 138 GNPPPKISWIREMLPVDTS---RNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVG 194
GNP P+ISW + + + + +Y + L IT+ D G Y+C+A+++VG
Sbjct: 455 GNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVG 514
Query: 195 TEYSPSTMLYVKG 207
S L V G
Sbjct: 515 VAEH-SAKLNVYG 526
Score = 101 bits (254), Expect = 3e-25
Identities = 46/208 (22%), Positives = 74/208 (35%), Gaps = 38/208 (18%)
Query: 23 DKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTS--RNPRYNL 80
+ P P I +A + +E + L C A GNP P+ISW + + + +
Sbjct: 425 GRFDP--PVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYV 482
Query: 81 LTSGAPGTYIKIKP--------------------NLFSPLSVYSADKIPPGFPQITEAPS 120
+G +Y+ I + L+VY P I +
Sbjct: 483 TVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGL-------PYIRQMEK 535
Query: 121 TKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITN-SIE 179
+V T ++ C +G P I W R+ + N + + + G L I N
Sbjct: 536 KAIVA-GETLIVTCPVAGYPIDSIVWERDNRALPI--NRKQKVFPN---GTLIIENVERN 589
Query: 180 EDQGKYECVAENEVGTEYSPSTMLYVKG 207
DQ Y CVA+N+ G S + V
Sbjct: 590 SDQATYTCVAKNQEGYSARGSLEVQVMV 617
Score = 100 bits (250), Expect = 8e-25
Identities = 39/206 (18%), Positives = 65/206 (31%), Gaps = 33/206 (16%)
Query: 24 KIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPP-KISWIREMLPVDTSRNPRYNLLT 82
+ P I A ++ LHCS G P I W + +
Sbjct: 616 MVLPRI--IPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISED--LGITTSR 671
Query: 83 SGAPGTYIKIKP--------------------NLFSPLSVYSADKIPPGFPQITEAPSTK 122
G G+ + I+ +PL+VY P+ P+ K
Sbjct: 672 VGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVP-------PRWILEPTDK 724
Query: 123 VVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAP-GALQITNSIEED 181
+ C A G P P+++W + + G L + N + +
Sbjct: 725 AFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTN 784
Query: 182 QGKYECVAENEVGTEYSPSTMLYVKG 207
+G Y C A N +G+ S M+ V+
Sbjct: 785 EGYYLCEAINGIGSGLSAVIMISVQA 810
Score = 99.6 bits (248), Expect = 2e-24
Identities = 40/204 (19%), Positives = 65/204 (31%), Gaps = 28/204 (13%)
Query: 30 PQITEAPSTKVVEISHTTVLHC---SASGNPPPKISWIREMLPVDTSR---NPRYNLLTS 83
+ + V ++ V+ C S + +SW + + +Y +L S
Sbjct: 139 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS 198
Query: 84 G-----------APGTYI---------KIKPNLFSPLSVYSADKIPPGFPQIT-EAPSTK 122
G +Y + + + V + ++ K
Sbjct: 199 GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMK 258
Query: 123 VVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQ 182
S T L C A G P P W + + + N G L I +++ ED
Sbjct: 259 TYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDS 318
Query: 183 GKYECVAENEVGTEYSPSTMLYVK 206
GKY CV N VG E T+L V
Sbjct: 319 GKYLCVVNNSVGGESV-ETVLTVT 341
Score = 96.2 bits (239), Expect = 3e-23
Identities = 38/191 (19%), Positives = 62/191 (32%), Gaps = 39/191 (20%)
Query: 36 PSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTYIKIKPN 95
K S T L C A G P P W + + + N GT I
Sbjct: 255 FDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV 314
Query: 96 L-------------------FSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSA 136
+ + L+V + P T+ V+ V C
Sbjct: 315 VEDSGKYLCVVNNSVGGESVETVLTVTAP-------LSAKIDPPTQTVDFGRPAVFTCQY 367
Query: 137 SGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTE 196
+GNP +SW+++ + S L+I + +ED+G Y+C N+ +
Sbjct: 368 TGNPIKTVSWMKDGKAIGHSE------------SVLRIESVKKEDKGMYQCFVRNDRESA 415
Query: 197 YSPSTMLYVKG 207
+ S L + G
Sbjct: 416 EA-SAELKLGG 425
Score = 95.4 bits (237), Expect = 5e-23
Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 22/192 (11%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGA---- 85
P I + +V T ++ C +G P I W R+ + N + + +G
Sbjct: 528 PYIRQMEKKAIVA-GETLIVTCPVAGYPIDSIVWERDNRALPI--NRKQKVFPNGTLIIE 584
Query: 86 -------PGTY---IKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCS 135
TY K + + S+ + P I A ++ LHCS
Sbjct: 585 NVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRI--IPFAFEEGPAQVGQYLTLHCS 642
Query: 136 ASGNPPP-KISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVG 194
G P I W + + + + L I G + C A N G
Sbjct: 643 VPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRG-SVLTIEAVEASHAGNFTCHARNLAG 701
Query: 195 TEYSPSTMLYVK 206
+ +T L V
Sbjct: 702 HQ-QFTTPLNVY 712
Score = 85.4 bits (211), Expect = 1e-19
Identities = 34/193 (17%), Positives = 54/193 (27%), Gaps = 21/193 (10%)
Query: 30 PQITEAPSTKV-VEISHTTVLHCSASGNPPPKISWIRE-MLPVDTSRNPRY--------- 78
P + P+ ++ S + C ASGNP P+I WIR V R
Sbjct: 39 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVF 98
Query: 79 -NLLTSGAP-----GTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVL 132
Y + N F + + + V ++ V+
Sbjct: 99 PPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVI 158
Query: 133 HC---SASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEED-QGKYECV 188
C S + +SW + G L I ED Y+C
Sbjct: 159 KCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCR 218
Query: 189 AENEVGTEYSPST 201
++ + E S
Sbjct: 219 TKHRLTGETRLSA 231
Score = 69.2 bits (169), Expect = 5e-14
Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 12/101 (11%)
Query: 113 PQITEAPSTKV-VEISHTTVLHCSASGNPPPKISWIRE-MLPVDTSRNPRYNLLTSGAPG 170
P + P+ ++ S + C ASGNP P+I WIR V R + G
Sbjct: 39 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQIS----SDG 94
Query: 171 ALQITN------SIEEDQGKYECVAENEVGTEYSPSTMLYV 205
L E Y C+A N+ G+ S +
Sbjct: 95 KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRA 135
Score = 33.4 bits (76), Expect = 0.056
Identities = 4/25 (16%), Positives = 10/25 (40%)
Query: 172 LQITNSIEEDQGKYECVAENEVGTE 196
+ + N + + VA G++
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQ 25
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 102 bits (255), Expect = 2e-26
Identities = 34/198 (17%), Positives = 58/198 (29%), Gaps = 25/198 (12%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTY 89
P E V L C +G+P P + W R+ + +Y +
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIAD-GLKYRIQEFKGGYHQ 63
Query: 90 IKIKP--------------------NLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHT 129
+ I + + L V KI P+ E
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHL--PKTLEGMGAVHALRGEV 121
Query: 130 TVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVA 189
+ SG P P I+W + +D + + + +T + +D G Y A
Sbjct: 122 VSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVI-VTRSFTSLVFPNGVERKDAGFYVVCA 180
Query: 190 ENEVGTEYSPSTMLYVKG 207
+N G + + L V
Sbjct: 181 KNRFGIDQK-TVELDVAD 197
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 100 bits (249), Expect = 2e-26
Identities = 35/213 (16%), Positives = 61/213 (28%), Gaps = 41/213 (19%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAP--- 86
+ + + ++ L C+ SG P++ W + + S
Sbjct: 5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVT 64
Query: 87 ----------------GTYI--------KIKPNLFSPLSVYSADKIPPGFPQITEAPSTK 122
GTY + L V P
Sbjct: 65 FLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVP-------PSKPTVNIPS 117
Query: 123 VVEISHTTVLHCSAS-GNPPPKISWIREMLPVDTSRNPRYNLLTSGAP-----GALQITN 176
I + VL CS G+PP + +W ++ + + T+ S G L
Sbjct: 118 SATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDP 177
Query: 177 SIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQ 209
D G+Y C A N GT + S + ++ +
Sbjct: 178 LSASDTGEYSCEARNGYGTPMT-SNAVRMEAVE 209
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 100 bits (250), Expect = 2e-26
Identities = 39/220 (17%), Positives = 64/220 (29%), Gaps = 35/220 (15%)
Query: 17 LSVYSADKIPPGFPQITE-APSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRN 75
+S S +K P + + V ++T C A GNP P + W++
Sbjct: 6 VSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHR 65
Query: 76 PRYNLLTSGAP------------GTYI--------KIKPNLFSPLSVYSADKIPPGFPQI 115
+ + G Y I L V + P
Sbjct: 66 IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH--LDVVERSRHRP--ILQ 121
Query: 116 TEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNP---------RYNLLTS 166
P+ + C + P I WI+ + + P +++ + S
Sbjct: 122 AGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINS 181
Query: 167 GAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
L + N E D G+Y C N +G S L V
Sbjct: 182 SNAEVLALFNVTEADAGEYICKVSNYIGQANQ-SAWLTVL 220
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 93.6 bits (233), Expect = 3e-25
Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 109 PPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGA 168
G P I + P+ + + + T +L C A+G+P P ISW++E R+PR +
Sbjct: 5 SSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFP-GRDPRATIQEQ-- 61
Query: 169 PGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGT 208
G LQI N D G Y CVA + G E S S +L V +
Sbjct: 62 -GTLQIKNLRISDTGTYTCVATSSSG-ETSWSAVLDVTES 99
Score = 60.1 bits (146), Expect = 2e-12
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 26 PPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSG 84
G P I + P+ + + + T +L C A+G+P P ISW++E R+PR + G
Sbjct: 5 SSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFP-GRDPRATIQEQG 62
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 96.5 bits (240), Expect = 8e-25
Identities = 38/214 (17%), Positives = 67/214 (31%), Gaps = 38/214 (17%)
Query: 26 PPGF--PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTS 83
P + P+ + V ++T C A+GNP P ISW++ R +
Sbjct: 11 APYWTRPERMD-KKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGE--HRIGGIKL 67
Query: 84 GAPGTYIKIKP--------------------NLFSPLSVYSADKIPPGFPQITEAPSTKV 123
+ ++ L V ++ P P+ +
Sbjct: 68 RHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVL--ERSPHRPILQAGLPANQT 125
Query: 124 VEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNP----------RYNLLTSGAPGALQ 173
+ HC + P I W++ + + P + + A L+
Sbjct: 126 AVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLR 185
Query: 174 ITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207
+ N E D G+Y C A N +G + L V G
Sbjct: 186 LANVSERDGGEYLCRATNFIGVAEK-AFWLSVHG 218
Score = 46.5 bits (110), Expect = 1e-06
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 17 LSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNP 76
L V ++ P P+ + + HC + P I W++ + + P
Sbjct: 104 LDVL--ERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGP 161
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 94.3 bits (234), Expect = 2e-24
Identities = 34/182 (18%), Positives = 69/182 (37%), Gaps = 17/182 (9%)
Query: 37 STKVVEISHTTVLHCSASGNPPPKIS--WIREMLPVDTSRNPRYNL-LTSGAP---GTYI 90
T V ++ +L CS + + W++ + + P + G Y
Sbjct: 6 FTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYS 65
Query: 91 KIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPP-KISWIRE 149
+ F P + +A+ G P++ S++ + T +L C + PP +W +
Sbjct: 66 CV----FLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKI 121
Query: 150 M----LPVDTSRNPRYNLLTSGAPGALQITN-SIEEDQGKYECVAENEVGTEYSPSTMLY 204
+ R+ + +S L I N ++E D G+Y C + G++ + L
Sbjct: 122 TDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQA-IITLR 180
Query: 205 VK 206
V+
Sbjct: 181 VR 182
Score = 43.1 bits (101), Expect = 1e-05
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPP-KISWIREM----LPVDTSRNPRYNLLTSG 84
P++ S++ + T +L C + PP +W + + R+ + +S
Sbjct: 84 PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 143
Query: 85 APGT 88
Sbjct: 144 GRSE 147
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 96.6 bits (240), Expect = 4e-24
Identities = 42/213 (19%), Positives = 64/213 (30%), Gaps = 37/213 (17%)
Query: 26 PPGFPQITE-APSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTS-RNPRYNLLTS 83
P + + V ++T C A+GNP P ISW++ R L
Sbjct: 119 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 178
Query: 84 GA-----------PGTYI--------KIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVV 124
G Y I+ L V P P+ +
Sbjct: 179 QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYT--LDVLERSPHRP--ILQAGLPANQTA 234
Query: 125 EISHTTVLHCSASGNPPPKISWIREML----PVDTSRNPRYNLLTSGAP-------GALQ 173
+ HC + P I W++ + V P +L + L
Sbjct: 235 VLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLS 294
Query: 174 ITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
+ N ED G+Y C+A N +G + S L V
Sbjct: 295 LHNVTFEDAGEYTCLAGNSIGFSHH-SAWLVVL 326
Score = 85.8 bits (212), Expect = 3e-20
Identities = 37/210 (17%), Positives = 57/210 (27%), Gaps = 36/210 (17%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSA-SGNPPPKISWIREMLPVDTS--------------- 73
V L C G P W+++ + S
Sbjct: 9 GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNA 68
Query: 74 ------------RNPRYNLLTSGAPGTYIKIKPNLFSPLSVYSADKIPPGFPQITE---- 117
R + L T + + G P T
Sbjct: 69 SHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERM 128
Query: 118 APSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTS-RNPRYNLLTSGAPGALQITN 176
V ++T C A+GNP P ISW++ R L +L + +
Sbjct: 129 DKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQ--WSLVMES 186
Query: 177 SIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
+ D+G Y CV EN+ G+ + L V
Sbjct: 187 VVPSDRGNYTCVVENKFGSIRQ-TYTLDVL 215
Score = 66.2 bits (161), Expect = 4e-13
Identities = 18/100 (18%), Positives = 27/100 (27%), Gaps = 7/100 (7%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSA-SGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGA 171
V L C G P W+++ + S R +
Sbjct: 9 GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSE--RVLVGP----QR 62
Query: 172 LQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVD 211
LQ+ N+ ED G Y C S + + D
Sbjct: 63 LQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGD 102
Score = 45.4 bits (107), Expect = 4e-06
Identities = 12/89 (13%), Positives = 24/89 (26%), Gaps = 2/89 (2%)
Query: 17 LSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNP 76
L V P P+ + + HC + P I W++ + + P
Sbjct: 212 LDVLERSPHRP--ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGP 269
Query: 77 RYNLLTSGAPGTYIKIKPNLFSPLSVYSA 105
+ LS+++
Sbjct: 270 DGTPYVTVLKTAGANTTDKELEVLSLHNV 298
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 90.6 bits (225), Expect = 7e-24
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 110 PGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAP 169
G P I + P + V + T VL C A+G+P P I W ++ + V T + R L +
Sbjct: 6 SGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQ-DSRIKQLEN--- 61
Query: 170 GALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207
G LQI + D G+Y C+A G E + S + V+
Sbjct: 62 GVLQIRYAKLGDTGRYTCIASTPSG-EATWSAYIEVQE 98
Score = 59.0 bits (143), Expect = 8e-12
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 27 PGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSG 84
G P I + P + V + T VL C A+G+P P I W ++ + V T + R L +G
Sbjct: 6 SGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQ-DSRIKQLENG 62
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 92.7 bits (230), Expect = 8e-24
Identities = 31/198 (15%), Positives = 56/198 (28%), Gaps = 31/198 (15%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSA-SGNPPPKISWIREMLPVDTSRNPRYNLLTSGAP-- 86
P T L C PP++ W+R+ ++ + + + +
Sbjct: 3 SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62
Query: 87 ------------------GTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISH 128
G Y + G P E P + V +
Sbjct: 63 DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANT 122
Query: 129 TTVLHCSASGNPPP-KISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYEC 187
L C A G P P + W+++ +P+ T+ +L + + C
Sbjct: 123 PFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQ-------RSLHVPG--LNKTSSFSC 173
Query: 188 VAENEVGTEYSPSTMLYV 205
A N G S + + V
Sbjct: 174 EAHNAKGVTTSRTATITV 191
Score = 79.6 bits (196), Expect = 8e-19
Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 8/103 (7%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSA-SGNPPPKISWIREMLPVDTSRNPRYNLLTSGAP-- 169
P T L C PP++ W+R+ ++ + + + +
Sbjct: 3 SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62
Query: 170 -----GALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207
L+IT+ D G+Y+C+ T S + ++G
Sbjct: 63 DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG 105
Score = 46.0 bits (109), Expect = 1e-06
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 28 GFPQITEAPSTKVVEISHTTVLHCSASGNPPP-KISWIREMLPVDTSR 74
G P E P + V + L C A G P P + W+++ +P+ T+
Sbjct: 105 GLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAP 152
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 95.6 bits (237), Expect = 4e-23
Identities = 40/214 (18%), Positives = 68/214 (31%), Gaps = 40/214 (18%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTY 89
P+IT P + E + L C+A + ++W + T
Sbjct: 551 PEITLQPDMQPTEQ-ESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTL 609
Query: 90 IKIKPNLFSP-------LSVYSADK---------------------------IPPGFPQI 115
K+ +FS + + +A + P I
Sbjct: 610 WKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTI 669
Query: 116 TEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQIT 175
T + I + + C+ASGNPPP+I W ++ + L L I
Sbjct: 670 TGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVED--SGIVLKDGN--RNLTIR 725
Query: 176 NSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQ 209
+ED+G Y C A + +G ++G Q
Sbjct: 726 RVRKEDEGLYTCQACSVLGCAKV-EAFFIIEGAQ 758
Score = 87.9 bits (217), Expect = 2e-20
Identities = 28/199 (14%), Positives = 53/199 (26%), Gaps = 30/199 (15%)
Query: 26 PPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGA 85
+ + + + VL+C+A I + E N
Sbjct: 221 YRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQ 280
Query: 86 PGTYIKIKPNLFSPLSVYSAD-----------------------KIPPGFPQITEAPSTK 122
G+ +K + + V +D P + S
Sbjct: 281 SGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLV 340
Query: 123 VVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQ 182
+ + G PPP+I W + +P++++ + L I E D
Sbjct: 341 EATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAG-------HVLTIMEVSERDT 393
Query: 183 GKYECVAENEVGTEYSPST 201
G Y + N + E
Sbjct: 394 GNYTVILTNPISKEKQSHV 412
Score = 79.0 bits (194), Expect = 2e-17
Identities = 33/225 (14%), Positives = 63/225 (28%), Gaps = 47/225 (20%)
Query: 26 PPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYN---LLT 82
P + S + + G PPP+I W + +P++++ + +
Sbjct: 327 KPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIM 386
Query: 83 SGAP---GTYIKI------KPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLH 133
+ G Y I K +S+ +PP + + + T L
Sbjct: 387 EVSERDTGNYTVILTNPISKEKQSHVVSLV--VYVPPQIGEKSLISPVDSYQYGTTQTLT 444
Query: 134 CSASGNPPP-KISWIREMLPVDTSRNPRYNLLTSGAPGA--------------------- 171
C+ PPP I W ++ + + +T+ P
Sbjct: 445 CTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQF 504
Query: 172 ----------LQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
+ Y+C A N+VG +V
Sbjct: 505 ALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRG-ERVISFHVT 548
Score = 73.3 bits (179), Expect = 2e-15
Identities = 26/196 (13%), Positives = 50/196 (25%), Gaps = 25/196 (12%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTY 89
P+++ ++ + T + C G W + + + G
Sbjct: 32 PRLSIQKDILTIKANTTLQITCR--GQRDLDWLWPNN--QSGSEQRVEVTECSDGLFCKT 87
Query: 90 IKIK----------------PNLFSPLSVYSADKIPP--GFPQITEAPSTKVVEISHTTV 131
+ I +L S + VY D P + T V
Sbjct: 88 LTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVV 147
Query: 132 LHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAEN 191
+ C S + R R + + I + + G C A+
Sbjct: 148 IPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSK---KGFTIPSYMISYAGMVFCEAKI 204
Query: 192 EVGTEYSPSTMLYVKG 207
+ S ++ V G
Sbjct: 205 NDESYQSIMYIVVVVG 220
Score = 72.9 bits (178), Expect = 2e-15
Identities = 30/212 (14%), Positives = 55/212 (25%), Gaps = 24/212 (11%)
Query: 17 LSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR----EMLPVDT 72
+ Y + I + T V+ C S + R +P
Sbjct: 118 VQDYRSPFIAS--VSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGN 175
Query: 73 --SRNPRYNLLTSGA----PGTYI---KIKPNLFSPLSVYSADKIPPGFPQITEAPSTKV 123
S + + G KI + + + +
Sbjct: 176 RISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIE 235
Query: 124 VEISHTTVLHCSASGNPPPKISW--------IREMLPVDTSRNPRYNLLTSGAPGALQIT 175
+ + VL+C+A I + + V+ + L I
Sbjct: 236 LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTID 295
Query: 176 NSIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207
DQG Y C A + + T+ + ST + V
Sbjct: 296 GVTRSDQGLYTCAASSGLMTKKN-STFVRVHE 326
Score = 70.9 bits (173), Expect = 1e-14
Identities = 29/237 (12%), Positives = 62/237 (26%), Gaps = 63/237 (26%)
Query: 24 KIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPP-KISWIREMLPVDTSRNPRYNLLT 82
+PP + + + T L C+ PPP I W ++ + + +T
Sbjct: 418 YVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVT 477
Query: 83 SGAPGTYIKIKPNLFSPLSVYSADKIPPGF------------------------------ 112
+ P + + +
Sbjct: 478 NPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVG 537
Query: 113 -------------PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPV------ 153
P+IT P + E + L C+A + ++W +
Sbjct: 538 RGERVISFHVTRGPEITLQPDMQPTEQ-ESVSLWCTADRSTFENLTWYKLGPQPLPIHVG 596
Query: 154 ------------DTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYS 198
N ++ +++ N+ +DQG Y C+A++ +
Sbjct: 597 ELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRH 653
Score = 47.4 bits (112), Expect = 1e-06
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
Query: 1 TCIGTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPK 60
C+ K K + +++ P IT + I + + C+ASGNPPP+
Sbjct: 641 VCLAQDRKTKKRHCVVRQLTVLERVAP---TITGNLENQTTSIGESIEVSCTASGNPPPQ 697
Query: 61 ISWIREMLPVDTSRNPRY 78
I W ++ +
Sbjct: 698 IMWFKDNETLVEDSGIVL 715
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 87.4 bits (217), Expect = 9e-23
Identities = 18/95 (18%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGAL 172
P+I PS ++ + C+ +G P P+++W + + R+++ + L
Sbjct: 6 PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTL 65
Query: 173 QITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207
I + ++D G Y NE G++ + + ++++
Sbjct: 66 IIMDVQKQDGGLYTLSLGNEFGSDSA-TVNIHIRS 99
Score = 52.3 bits (126), Expect = 1e-09
Identities = 10/55 (18%), Positives = 25/55 (45%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSG 84
P+I PS ++ + C+ +G P P+++W + + R+++ +
Sbjct: 6 PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTD 60
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 93.5 bits (232), Expect = 2e-22
Identities = 33/183 (18%), Positives = 57/183 (31%), Gaps = 14/183 (7%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTY 89
T +PS L C A+ NPP + SW+ + ++ + +T G Y
Sbjct: 382 DDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQELFISNITEKNSGLY 441
Query: 90 I------KIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPK 143
+ + ++ + ++P + ++K VE C
Sbjct: 442 TCQANNSASGHSRTTVKTITVSAELPK---PSISSNNSKPVEDKDAVAFTCEPEAQNTTY 498
Query: 144 ISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTML 203
+ W+ +PR L L + N D Y C +N V S L
Sbjct: 499 LWWVNGQ---SLPVSPRLQLSNGN--RTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTL 553
Query: 204 YVK 206
V
Sbjct: 554 DVL 556
Score = 90.8 bits (225), Expect = 2e-21
Identities = 43/186 (23%), Positives = 67/186 (36%), Gaps = 12/186 (6%)
Query: 25 IPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSG 84
+ G T +P L C A+ NPP + SW +++ +T
Sbjct: 199 VLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQELFIPNITVN 258
Query: 85 APGTYIKIKPNLFSPLSVYSADKI----PPGFPQITEAPSTKVVEISHTTVLHCSASGNP 140
G+Y N + L+ + I P P IT ++ VE L C
Sbjct: 259 NSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITS-NNSNPVEDEDAVALTCEPEIQN 317
Query: 141 PPKISWIR-EMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSP 199
+ W+ + LPV PR L L + + D G YEC +NE+ ++S
Sbjct: 318 TTYLWWVNNQSLPVS----PRLQLSNDN--RTLTLLSVTRNDVGPYECGIQNELSVDHSD 371
Query: 200 STMLYV 205
+L V
Sbjct: 372 PVILNV 377
Score = 83.9 bits (207), Expect = 4e-19
Identities = 28/196 (14%), Positives = 45/196 (22%), Gaps = 33/196 (16%)
Query: 25 IPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSG 84
+ ++K VE C + W+ +PR L
Sbjct: 463 SAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQ---SLPVSPRLQLSNGN 519
Query: 85 AP-----------GTYIKIKPNLFSPLSVYSAD---KIPPGFPQITEAPSTKVVEISHTT 130
Y+ N S P +P
Sbjct: 520 RTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGP--DTPIISPPDSSYLSGANL 577
Query: 131 VLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAE 190
L C ++ NP P+ SW +P + L I + G Y C
Sbjct: 578 NLSCHSASNPSPQYSWRINGIPQQHT-------------QVLFIAKITPNNNGTYACFVS 624
Query: 191 NEVGTEYSPSTMLYVK 206
N + S + +
Sbjct: 625 NLATGR-NNSIVKSIT 639
Score = 80.4 bits (198), Expect = 7e-18
Identities = 32/205 (15%), Positives = 56/205 (27%), Gaps = 36/205 (17%)
Query: 31 QIT-EAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSR--------------- 74
++T E+ V E +L SW + +
Sbjct: 1 KLTIESTPFNVAE-GKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGP 59
Query: 75 --NPRYNLLTSGA----------PGTYI-KIKPNLFSPLSVYSADKIPPGFPQIT-EAPS 120
+ R + + + G Y + + ++ P P+ + + +
Sbjct: 60 AYSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNN 119
Query: 121 TKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEE 180
+K VE C W + S PR L L + N
Sbjct: 120 SKPVEDKDAVAFTCEPETQDAT-YLWWVNNQSLPVS--PRLQLSNGN--RTLTLFNVTRN 174
Query: 181 DQGKYECVAENEVGTEYSPSTMLYV 205
D Y+C +N V S S +L V
Sbjct: 175 DTASYKCETQNPVSARRSDSVILNV 199
Score = 77.7 bits (191), Expect = 5e-17
Identities = 38/197 (19%), Positives = 59/197 (29%), Gaps = 38/197 (19%)
Query: 26 PPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGA 85
P P IT ++ VE L C W + S PR L
Sbjct: 287 EPPKPFITS-NNSNPVEDEDAVALTCEPEIQNTT-YLWWVNNQSLPVS--PRLQLSNDNR 342
Query: 86 -----------PGTYI-----KIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHT 129
G Y ++ + P+ + + G T +PS
Sbjct: 343 TLTLLSVTRNDVGPYECGIQNELSVDHSDPVIL----NVLYGPDDPTISPSYTYYRPGVN 398
Query: 130 TVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVA 189
L C A+ NPP + SW+ + + L I+N E++ G Y C A
Sbjct: 399 LSLSCHAASNPPAQYSWLIDGNIQQHT-------------QELFISNITEKNSGLYTCQA 445
Query: 190 ENEVGTEYSPSTMLYVK 206
N +T+ +
Sbjct: 446 NNSASGHSR-TTVKTIT 461
Score = 77.3 bits (190), Expect = 7e-17
Identities = 30/177 (16%), Positives = 45/177 (25%), Gaps = 24/177 (13%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNL------LTS 83
+ ++K VE C W + S + + L +
Sbjct: 112 KPSISSNNSKPVEDKDAVAFTCEPETQDAT-YLWWVNNQSLPVSPRLQLSNGNRTLTLFN 170
Query: 84 GAP---GTYIKIKPNLFSPLSVYSAD-KIPPGFPQITEAPSTKVVEISHTTVLHCSASGN 139
+Y N S S + G T +P L C A+ N
Sbjct: 171 VTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASN 230
Query: 140 PPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTE 196
PP + SW ++ L I N + G Y C A N
Sbjct: 231 PPAQYSWFVNGTFQQST-------------QELFIPNITVNNSGSYTCQAHNSDTGL 274
Score = 54.2 bits (130), Expect = 5e-09
Identities = 18/108 (16%), Positives = 28/108 (25%), Gaps = 16/108 (14%)
Query: 114 QIT-EAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAP--- 169
++T E+ V E +L SW + + Y + T A
Sbjct: 1 KLTIESTPFNVAE-GKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGP 59
Query: 170 -----------GALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
+L I N I+ D G Y + V
Sbjct: 60 AYSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVY 107
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 90.0 bits (223), Expect = 6e-22
Identities = 36/190 (18%), Positives = 62/190 (32%), Gaps = 16/190 (8%)
Query: 32 ITEAPSTKVVEISHTTVLHCSASG-NPPPKISWIRE--MLPVDTSR---NPRYNLLTSGA 85
V VL C + +S +RE + + +P + A
Sbjct: 92 WNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKA 151
Query: 86 P----GTYI---KIKPNLFSPLSVY-SADKIPPGFPQITEAPSTKVVEISHTTVLHCSAS 137
TY+ + + ++ +++ P PQI PS V + CSA+
Sbjct: 152 KVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSAT 211
Query: 138 GNPPPKISWI-REMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTE 196
+ R ++ N + AL + +D G Y CVA N+VGT
Sbjct: 212 NAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTR 271
Query: 197 YSPSTMLYVK 206
+ + V
Sbjct: 272 TA-TMNFQVV 280
Score = 75.8 bits (186), Expect = 8e-17
Identities = 34/194 (17%), Positives = 49/194 (25%), Gaps = 17/194 (8%)
Query: 27 PGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYN--LLTSG 84
P I + VVE T L C ++G+ + W + P T L T
Sbjct: 2 DPAPVIEPSGPELVVEPGETVTLRCVSNGS----VEWDGPISPYWTLDPESPGSTLTTRN 57
Query: 85 AP----GTYIKIKPNLFSPLSVYSADKIPPGFPQI-TEAPSTKVVEISHTTVLHCSASG- 138
A GTY + S + V VL C +
Sbjct: 58 ATFKNTGTYRCTELEDPMAGS-TTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDP 116
Query: 139 NPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYS 198
+S +RE + R + I + D Y C S
Sbjct: 117 ALKDSVSLMRE----GGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTS 172
Query: 199 PSTMLYVKGTQVDI 212
L V +
Sbjct: 173 TGIWLKVNRVHPEP 186
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 89.8 bits (222), Expect = 1e-21
Identities = 28/182 (15%), Positives = 47/182 (25%), Gaps = 20/182 (10%)
Query: 29 FPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAP-- 86
P + V++ +L C G + WI L + L + G
Sbjct: 158 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLA 217
Query: 87 --------GTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASG 138
N V A+ + H + S G
Sbjct: 218 NVTSDLNRKNVTCWAEN-----DVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDG 272
Query: 139 NPPPKISWIREMLPVDTSRNPRYNLLTSGAP-----GALQITNSIEEDQGKYECVAENEV 193
P P + W+ ++ + L A G L++ + G Y +A N
Sbjct: 273 QPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPF 332
Query: 194 GT 195
G
Sbjct: 333 GQ 334
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 90.5 bits (224), Expect = 1e-21
Identities = 26/217 (11%), Positives = 58/217 (26%), Gaps = 27/217 (12%)
Query: 1 TCIGTYIKIKPNLFSPLSVY---------SADKIPPGFPQITEAPSTKVVEISHTTVLHC 51
C+ K + S Y + P + V++S + L
Sbjct: 11 KCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQV 70
Query: 52 SASGNPPPKISWIREMLPVDTSRNPRYNLLTSGA----------PGTYIKIKPNLFSPLS 101
W+ + ++ + + G Y+ + + +
Sbjct: 71 LVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYT 130
Query: 102 VYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRY 161
+ I P + +E + L C + P P + W+ ++ +
Sbjct: 131 ILFTVSIRNTLLYTLRRPYFRKME--NQDALVCISESVPEPIVEWVLCDSQGESCKEESP 188
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYS 198
++ + D C A NE+G E +
Sbjct: 189 AVVKK---EEKVLHELFGTD---IRCCARNELGRECT 219
Score = 85.5 bits (211), Expect = 8e-20
Identities = 24/197 (12%), Positives = 53/197 (26%), Gaps = 27/197 (13%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSA-SGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGT 88
+++ + C A N ++W E ++ + + T T
Sbjct: 228 QTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGN--YFEMSTYSTNRT 285
Query: 89 YIKIKPNLFSPLSV---------------YSA--DKIPPGFPQITEAPSTKVVEISHTTV 131
I+I S ++ SA + GF T + ++
Sbjct: 286 MIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFC 345
Query: 132 LHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAEN 191
P + +W + N + + + + G+Y AEN
Sbjct: 346 FSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYS------ISKFCNHKHQPGEYIFHAEN 399
Query: 192 EVGTEYSPSTMLYVKGT 208
+ + L ++
Sbjct: 400 DDAQF-TKMFTLNIRSG 415
Score = 41.2 bits (96), Expect = 1e-04
Identities = 5/48 (10%), Positives = 11/48 (22%)
Query: 27 PGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSR 74
GF T + ++ P + +W +
Sbjct: 324 KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQ 371
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 83.9 bits (208), Expect = 2e-21
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGAL 172
+I P + V + C G P P ++W+R+ + TS R+ + T+
Sbjct: 15 ARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTS--ARHQVTTTKYKSTF 72
Query: 173 QITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
+I++ D+G Y V EN G + + L ++
Sbjct: 73 EISSVQASDEGNYSVVVENSEGKQEA-EFTLTIQ 105
Score = 47.7 bits (114), Expect = 8e-08
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGT 88
+I P + V + C G P P ++W+R+ + TS R+ + T+ T
Sbjct: 15 ARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTS--ARHQVTTTKYKST 71
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 90.1 bits (223), Expect = 3e-21
Identities = 21/194 (10%), Positives = 50/194 (25%), Gaps = 18/194 (9%)
Query: 24 KIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTS 83
+ P + V++S + L W+ + ++ +
Sbjct: 43 ALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGV 102
Query: 84 GA----------PGTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLH 133
+ G Y+ + + ++ I T + L
Sbjct: 103 VSMVILKMTETQAGEYLLFIQSEATNYTILFTVSI-RNTLLYTLRRPYFRKMEN-QDALV 160
Query: 134 CSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEV 193
C + P P + W+ ++ + ++ E C A NE+
Sbjct: 161 CISESVPEPIVEWVLCDSQGESCKEESPAVVKKE------EKVLHELFGTDIRCCARNEL 214
Query: 194 GTEYSPSTMLYVKG 207
G E + + +
Sbjct: 215 GRECTRLFTIDLNQ 228
Score = 83.6 bits (206), Expect = 5e-19
Identities = 20/189 (10%), Positives = 47/189 (24%), Gaps = 19/189 (10%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGA---- 85
T + L C + P P + W+ ++ + ++
Sbjct: 141 LLYTLRRPYFRKMEN-QDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLH 199
Query: 86 ---PGTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASG-NPP 141
N PQ T +++ + C A N
Sbjct: 200 ELFGTDIRCCARNELGRECTRLFTIDLNQTPQTT--LPQLFLKVGEPLWIRCKAVHVNHG 257
Query: 142 PKISWIREMLPVDTSRNPRYNLLTSGAP----GALQITNSIEEDQGKYECVAENEVGTEY 197
++W E ++ + ++ +++ D G Y C +
Sbjct: 258 FGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ-- 315
Query: 198 SPSTMLYVK 206
S ++ +
Sbjct: 316 --SALVTIV 322
Score = 80.9 bits (199), Expect = 4e-18
Identities = 29/205 (14%), Positives = 52/205 (25%), Gaps = 38/205 (18%)
Query: 27 PGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNP---RYNLLTS 83
GF T + ++ P + +W + Y++
Sbjct: 324 KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKF 383
Query: 84 GA----PGTYIKIKPNLF------SPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLH 133
PG YI N L++ PQ+ S +
Sbjct: 384 CNHKHQPGEYIFHAENDDAQFTKMFTLNIRRK-------PQVLAEAS--------ASQAS 428
Query: 134 CSASGNPPPKISWIR---------EMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGK 184
C + G P P +W + E + + + + S
Sbjct: 429 CFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFL 488
Query: 185 YECVAENEVGTEYSPSTMLYVKGTQ 209
+C A N +GT + +L G
Sbjct: 489 VKCCAYNSLGTS-CETILLNSPGPF 512
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 87.1 bits (215), Expect = 7e-21
Identities = 28/214 (13%), Positives = 55/214 (25%), Gaps = 11/214 (5%)
Query: 1 TCIGTYIK-IKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPP 59
C + ++ + L ++ D P E + E + C + P
Sbjct: 67 FCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTE-ITEITIPCRVTD-PQL 124
Query: 60 KISWIRE--MLPVDTSRNPRYNLLTSGAPGTYIKIKPNLFSPL--SVYSADKIPPGFPQI 115
++ + + + + + +YI + Y ++ +
Sbjct: 125 VVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINV 184
Query: 116 TEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGA---PGAL 172
+ VV L C GN W P + L L
Sbjct: 185 SVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSIL 244
Query: 173 QITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
I ++ ED G Y C V + +
Sbjct: 245 HIPSAELEDSGTYTCNVTESVNDHQD-EKAINIT 277
Score = 57.4 bits (138), Expect = 3e-10
Identities = 28/191 (14%), Positives = 47/191 (24%), Gaps = 34/191 (17%)
Query: 32 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGA------ 85
+T V+ +S T VL CS S + W R + S
Sbjct: 3 VTPPGPELVLNVSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSVLTLTNL 58
Query: 86 ----PGTYI-------KIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHC 134
G Y ++ + L ++ D P E + E + C
Sbjct: 59 TGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTE-ITEITIPC 117
Query: 135 SASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVG 194
+ P ++ + V Q S + Y C
Sbjct: 118 RVTD-PQLVVTLHEKKGDVALPVPYD-----------HQRGFSGIFEDRSYICKTTIGDR 165
Query: 195 TEYSPSTMLYV 205
S + +Y
Sbjct: 166 EVDSDAYYVYR 176
Score = 54.7 bits (131), Expect = 3e-09
Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 7/92 (7%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQI 174
+T V+ +S T VL CS S + W R + S L +
Sbjct: 3 VTPPGPELVLNVSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSV---LTL 55
Query: 175 TNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
TN D G+Y C + G E LY+
Sbjct: 56 TNLTGLDTGEYFCTHNDSRGLETDERKRLYIF 87
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 81.6 bits (202), Expect = 2e-20
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGAL 172
P IT + I + + C+ASGNPPP+I W ++ + L L
Sbjct: 11 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVED--SGIVLKDGN--RNL 66
Query: 173 QITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQ 209
I +ED+G Y C A + +G ++G Q
Sbjct: 67 TIRRVRKEDEGLYTCQACSVLGCAKV-EAFFIIEGAQ 102
Score = 47.7 bits (114), Expect = 8e-08
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGA 85
P IT + I + + C+ASGNPPP+I W ++ + L
Sbjct: 11 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVED--SGIVLKDGNR 64
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 80.8 bits (200), Expect = 2e-20
Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 5/103 (4%)
Query: 105 ADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLL 164
K PP F + + V ++ G P P +SW+R PV + R+
Sbjct: 1 GSKAPPTF---KVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQR-RFAEE 56
Query: 165 TSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207
G L+I + D G Y C A NE G L V+G
Sbjct: 57 AEGGLCRLRILAAERGDAGFYTCKAVNEYGARQC-EARLEVRG 98
Score = 44.6 bits (106), Expect = 1e-06
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 22 ADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRN 75
K PP F + + V ++ G P P +SW+R PV +
Sbjct: 1 GSKAPPTF---KVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQR 51
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 85.8 bits (212), Expect = 3e-20
Identities = 29/224 (12%), Positives = 65/224 (29%), Gaps = 40/224 (17%)
Query: 16 PLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRN 75
L++ K P + + +++E + + K+++I +
Sbjct: 97 LLALSHEHKFPTVP--VKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPK 154
Query: 76 PRYNLLTSGAP-------------GTY------------------IKIKPNLFSPLSVYS 104
+ ++ + GTY + L
Sbjct: 155 YKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQR 214
Query: 105 ADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPP-KISWIREMLPVDTSRNPRYNL 163
+ I P E S +V +L C + I W ++ + +++
Sbjct: 215 QEWIRKQGPHFVEYLSWEVTG-ECNVLLKCKVANIKKETHIVWYKDEREISVDE--KHDF 271
Query: 164 LTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207
L IT ++D G YE + +++ G + S L +
Sbjct: 272 KDGI--CTLLITEFSKKDAGIYEVILKDDRGKDKS-RLKLVDEA 312
Score = 85.8 bits (212), Expect = 3e-20
Identities = 26/201 (12%), Positives = 61/201 (30%), Gaps = 35/201 (17%)
Query: 25 IPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSG 84
I P E + + C P + SW ++ + + S PR + + G
Sbjct: 2 IDPFT---KEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDS--PRLEVESKG 55
Query: 85 AP-------------GTY--------------IKIKPNLFSPLSVYSADKIPPGFPQITE 117
G Y + + L L++ K P +
Sbjct: 56 NKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVP--VKS 113
Query: 118 APSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNS 177
+ +++E + + K+++I + + ++ + + +
Sbjct: 114 ELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKL 173
Query: 178 IEEDQGKYECVAENEVGTEYS 198
+ED+G Y ++ T +S
Sbjct: 174 QDEDEGTYTFQLQDGKATNHS 194
Score = 35.4 bits (81), Expect = 0.009
Identities = 10/70 (14%), Positives = 18/70 (25%), Gaps = 2/70 (2%)
Query: 6 YIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPP-KISWI 64
+ L + I P E S +V +L C + I W
Sbjct: 199 VGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTG-ECNVLLKCKVANIKKETHIVWY 257
Query: 65 REMLPVDTSR 74
++ +
Sbjct: 258 KDEREISVDE 267
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 85.4 bits (211), Expect = 4e-20
Identities = 33/229 (14%), Positives = 62/229 (27%), Gaps = 46/229 (20%)
Query: 17 LSVYSADKIPPGFPQITEAPSTKV---VEISHTTVLHCSASGNPPPKISWIREMLPVDTS 73
L + ++ + +T + + K++W + S
Sbjct: 93 LVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYS 152
Query: 74 RNPRYNLLTSGAP-------------GTYI----------------------KIKPNLFS 98
R +G G Y+ +
Sbjct: 153 --DRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQR 210
Query: 99 PLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRN 158
A+K + P ++ L C+ G+PPP++SW++ + +
Sbjct: 211 LKQAAIAEKNRA--RVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDD- 267
Query: 159 PRYNLLTSGAP-GALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
NL I D GKY V +N+ G+E S + V
Sbjct: 268 -HCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETS-DFTVSVF 314
Score = 85.4 bits (211), Expect = 5e-20
Identities = 25/190 (13%), Positives = 48/190 (25%), Gaps = 26/190 (13%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPP-PKISWIREMLPVDTSRNPRYNLLTSGAP-- 86
P E S +V +L C + I W ++ + +++
Sbjct: 8 PHFVEYLSWEVTG-ECNVLLKCKVANIKKETHIVWYKDEREISVDE--KHDFKDGICTLL 64
Query: 87 ---------GTYIKIKPNLF------SPLSVYSADKIPPGFPQITEAPSTKV---VEISH 128
G Y I + L + ++ + +T +
Sbjct: 65 ITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEG 124
Query: 129 TTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECV 188
+ K++W + S R +G LQI D+GKY
Sbjct: 125 IQLYSFVTYYVEDLKVNWSHNGSAIRYS--DRVKTGVTGEQIWLQINEPTPNDKGKYVME 182
Query: 189 AENEVGTEYS 198
+
Sbjct: 183 LFDGKTGHQK 192
Score = 69.6 bits (170), Expect = 2e-14
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPP-PKISWIREMLPVDTSRNPRYNLLTSGAPGA 171
P E S +V +L C + I W ++ + +++
Sbjct: 8 PHFVEYLSWEVTG-ECNVLLKCKVANIKKETHIVWYKDEREISVDE--KHDFKDGIC--T 62
Query: 172 LQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207
L IT ++D G YE + +++ G + S L +
Sbjct: 63 LLITEFSKKDAGIYEVILKDDRGKDKS-RLKLVDEA 97
Score = 44.9 bits (106), Expect = 5e-06
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 4/89 (4%)
Query: 6 YIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR 65
Y + A+K + P ++ L C+ G+PPP++SW++
Sbjct: 201 YDEAYAEFQRLKQAAIAEKNRA--RVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLK 258
Query: 66 EMLPVDTSRNPRYNLLTSGAPGTYIKIKP 94
+ + NL Y I
Sbjct: 259 NEKALASDD--HCNLKFEAGRTAYFTING 285
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 85.2 bits (210), Expect = 5e-20
Identities = 29/204 (14%), Positives = 57/204 (27%), Gaps = 34/204 (16%)
Query: 26 PPGFPQITEAPSTKVVEISHTTVLHCS------ASGNPPPKISWIREMLPVDTSR----N 75
P +A + + ++ L C N PK+ W ++ P+
Sbjct: 100 EPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSG 159
Query: 76 PRYNLLTSGA----PGTYI--------KIKPNLFSPLSVYSADKIPPGFPQITEAPSTKV 123
+ L+ G Y + + + + ++ P P I + +
Sbjct: 160 VKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETM 219
Query: 124 -VEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRY----------NLLTSGAPGAL 172
V++ L C+ +G W +D N S L
Sbjct: 220 EVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVL 279
Query: 173 QITNSIEED-QGKYECVAENEVGT 195
I+ + + C A+N G
Sbjct: 280 NISEIESRFYKHPFTCFAKNTHGI 303
Score = 78.2 bits (192), Expect = 2e-17
Identities = 32/203 (15%), Positives = 58/203 (28%), Gaps = 43/203 (21%)
Query: 34 EAPSTKVVEISHTTVLHCSASGNPPP-KISWIRE--MLPVDTSRNPRYNLLTSGAPGTYI 90
E V + V C + N I+W ++ PV T + R + +
Sbjct: 10 EEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQ-----HKEKL 64
Query: 91 KIKP--------------------NLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTT 130
P + P +A + + ++
Sbjct: 65 WFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVEN---EPNLCYNAQAIFKQKLPVAGDG 121
Query: 131 VLHCS------ASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGK 184
L C N PK+ W ++ P+ N+ SG L + N E+ +G
Sbjct: 122 GLVCPYMEFFKNENNELPKLQWYKDCKPLLLD-----NIHFSGVKDRLIVMNVAEKHRGN 176
Query: 185 YECVAENEVG-TEYSPSTMLYVK 206
Y C A +Y + ++
Sbjct: 177 YTCHASYTYLGKQYPITRVIEFI 199
Score = 44.7 bits (105), Expect = 6e-06
Identities = 12/79 (15%), Positives = 26/79 (32%), Gaps = 3/79 (3%)
Query: 1 TCIGTYIK--IKPNLFSPLSVYSADKIPPGFPQITEAPSTKV-VEISHTTVLHCSASGNP 57
TC +Y + + + + ++ P P I + + V++ L C+ +G
Sbjct: 178 TCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQL 237
Query: 58 PPKISWIREMLPVDTSRNP 76
W +D
Sbjct: 238 SDIAYWKWNGSVIDEDDPV 256
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 82.6 bits (204), Expect = 9e-20
Identities = 33/210 (15%), Positives = 60/210 (28%), Gaps = 42/210 (20%)
Query: 32 ITEAPSTKVVEISHTTVLHCS-ASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAP---- 86
A K+ + L+ K++W + S R +G
Sbjct: 5 ALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSD--RVKTGVTGEQIWLQ 62
Query: 87 ---------GTYI----------------------KIKPNLFSPLSVYSADKIPPGFPQI 115
G Y+ + A+K +
Sbjct: 63 INEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRA--RVL 120
Query: 116 TEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQIT 175
P ++ L C+ G+PPP++SW++ + + + +G I
Sbjct: 121 GGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNL-KFEAGRTAYFTIN 179
Query: 176 NSIEEDQGKYECVAENEVGTEYSPSTMLYV 205
D GKY V +N+ G+E S + V
Sbjct: 180 GVSTADSGKYGLVVKNKYGSETS-DFTVSV 208
Score = 63.0 bits (153), Expect = 1e-12
Identities = 16/96 (16%), Positives = 27/96 (28%), Gaps = 4/96 (4%)
Query: 115 ITEAPSTKVVEISHTTVLHCS-ASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQ 173
A K+ + L+ K++W + S R +G LQ
Sbjct: 5 ALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSD--RVKTGVTGEQIWLQ 62
Query: 174 ITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQ 209
I D+GKY + + L +
Sbjct: 63 INEPTPNDKGKYVMELFDGKTGHQK-TVDLSGQAYD 97
Score = 42.5 bits (100), Expect = 2e-05
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTY 89
+ P ++ L C+ G+PPP++SW++ + + NL Y
Sbjct: 118 RVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQT--DHCNLKFEAGRTAY 175
Query: 90 IKIK 93
I
Sbjct: 176 FTIN 179
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 79.9 bits (197), Expect = 1e-19
Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGAL 172
P+I E PS +V L+C A G P P I W + V+T ++ + G+L
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 173 QITN-----SIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207
D+G Y CVA N +G S L V
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAA 109
Score = 52.1 bits (125), Expect = 3e-09
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTS---RNPRYNLLTSGA 85
P+I E PS +V L+C A G P P I W + V+T LL SG+
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 79.3 bits (196), Expect = 1e-19
Identities = 22/95 (23%), Positives = 34/95 (35%), Gaps = 3/95 (3%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGAL 172
P I V A+G P P W ++ + ++ +Y L L
Sbjct: 7 PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAI--TQGGKYKLSEDKGGFFL 64
Query: 173 QITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207
+I + D G Y C +N G+ S S L +K
Sbjct: 65 EIHKTDTSDSGLYTCTVKNSAGSVSS-SCKLTIKA 98
Score = 43.8 bits (104), Expect = 2e-06
Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 2/55 (3%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSG 84
P I V A+G P P W ++ + ++ +Y L
Sbjct: 7 PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAI--TQGGKYKLSEDK 59
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 81.9 bits (202), Expect = 1e-19
Identities = 28/213 (13%), Positives = 61/213 (28%), Gaps = 39/213 (18%)
Query: 28 GFPQITEAP-STKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAP 86
G T++ + +++E + + K+++I + + ++ +
Sbjct: 1 GIDPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI 60
Query: 87 -------------GTY------------------IKIKPNLFSPLSVYSADKIPPGFPQI 115
GTY + L + I P
Sbjct: 61 IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF 120
Query: 116 TEAPSTKVVEISHTTVLHCSASGNPPP-KISWIREMLPVDTSRNPRYNLLTSGAPGALQI 174
E S +V +L C + I W ++ + + L I
Sbjct: 121 VEYLSWEVTG-ECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF----KDGICTLLI 175
Query: 175 TNSIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207
T ++D G YE + +++ G + S L +
Sbjct: 176 TEFSKKDAGIYEVILKDDRGKDKS-RLKLVDEA 207
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 79.0 bits (195), Expect = 2e-19
Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 5/108 (4%)
Query: 99 PLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRN 158
P+ S D+ P P P V L C G PPP + W + + S
Sbjct: 2 PMKASSGDQGSP--PCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASE- 58
Query: 159 PRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
R + GA L +T ++ D G Y C A N G Y+ + + V
Sbjct: 59 -RLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYA-AAAVTVL 104
Score = 45.5 bits (108), Expect = 7e-07
Identities = 18/73 (24%), Positives = 24/73 (32%), Gaps = 4/73 (5%)
Query: 16 PLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRN 75
P+ S D+ P P P V L C G PPP + W + + S
Sbjct: 2 PMKASSGDQGSP--PCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASE- 58
Query: 76 PRYNLLTSGAPGT 88
R + GA
Sbjct: 59 -RLSFPADGAEHG 70
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 78.1 bits (193), Expect = 2e-19
Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 11/93 (11%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGAL 172
QI P+++ + T VL C A G+P P W + LP+
Sbjct: 4 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL-----------Y 52
Query: 173 QITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205
+ E QG Y C N+ ++ S + +
Sbjct: 53 MVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIII 85
Score = 50.4 bits (121), Expect = 6e-09
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNL 80
QI P+++ + T VL C A G+P P W + LP+ Y +
Sbjct: 4 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMV 54
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 81.9 bits (202), Expect = 5e-19
Identities = 32/191 (16%), Positives = 55/191 (28%), Gaps = 18/191 (9%)
Query: 32 ITEAPSTKVVEISHTTVLHCSASG-NPPPKISWIR-EMLPVDTSRN----PRYNLLTSGA 85
VV +L C + +S +R P+ N P + A
Sbjct: 92 WNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRA 151
Query: 86 ----PGTY-----IKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSA 136
Y + + + + + PG P +T P+ V + CSA
Sbjct: 152 KFIQSQDYQCSALMGGRKVMSISIRLKVQKV-IPGPPALTLVPAELVRIRGEAAQIVCSA 210
Query: 137 SGNPPPKISWIR-EMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGT 195
S +++ + + ++ L + + G Y CVA N G
Sbjct: 211 SSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGK 270
Query: 196 EYSPSTMLYVK 206
S S V
Sbjct: 271 H-STSMFFRVV 280
Score = 71.9 bits (176), Expect = 2e-15
Identities = 36/193 (18%), Positives = 56/193 (29%), Gaps = 29/193 (15%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYN--LLTSGAP- 86
P I + VV+ T L C +G+ + W P T + + L T+ A
Sbjct: 5 PVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSPHWTLYSDGSSSILSTNNATF 60
Query: 87 ---GTYIKIKPNLFSP------LSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSAS 137
GTY +P L V + VV +L C +
Sbjct: 61 QNTGTYRCTEPGDPLGGSAAIHLYVKDPARP------WNVLAQEVVVFEDQDALLPCLLT 114
Query: 138 G-NPPPKISWIR-EMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGT 195
+S +R P+ N ++ I + Y+C A
Sbjct: 115 DPVLEAGVSLVRVRGRPLMRHTNYSFS-----PWHGFTIHRAKFIQSQDYQCSALMGGRK 169
Query: 196 EYSPSTMLYVKGT 208
S S L V+
Sbjct: 170 VMSISIRLKVQKV 182
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 81.7 bits (201), Expect = 6e-19
Identities = 25/197 (12%), Positives = 60/197 (30%), Gaps = 23/197 (11%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR---EMLPVDT--SRNPRYNLLTSG 84
++ + ++ C + + S I + LP D NP+ +
Sbjct: 92 AKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKN 151
Query: 85 AP-----GTY-----IKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHC 134
++ + P ++ ++ +++ T + C
Sbjct: 152 VKRAYHRLCVRCAAQRDGTWLHSDKFTLK-VREAIKAIPVVSVPETSHLLKKGDTFTVVC 210
Query: 135 SASG-NPPPKISWIREMLPVDTSRNPRYNLLTSGAP-----GALQITNSIEEDQGKYECV 188
+ + W++ ++N G L I+++ +D G + C
Sbjct: 211 TIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCY 270
Query: 189 AENEVGTEYSPSTMLYV 205
A N G+ + +T L V
Sbjct: 271 ANNTFGSA-NVTTTLKV 286
Score = 74.4 bits (182), Expect = 3e-16
Identities = 32/188 (17%), Positives = 53/188 (28%), Gaps = 19/188 (10%)
Query: 27 PGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAP 86
P P I A S +VE T L C + W + + N + + A
Sbjct: 10 PSPPSIHPAQSELIVEAGDTLSLTCIDPDF----VRWTFKTYFNEMVENKKNEWIQEKAE 65
Query: 87 ----GTYI-KIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPP 141
GTY L S + V+ D ++ + ++ C +
Sbjct: 66 ATRTGTYTCSNSNGLTSSIYVFVRDP-----AKLFLVGLPLFGKEDSDALVRCPLTDPQV 120
Query: 142 PKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSI-EEDQGKYECVAENEVGTEYSPS 200
+ S I D P + I N + C A+ + +S
Sbjct: 121 SQYSLIEC----DGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDK 176
Query: 201 TMLYVKGT 208
L V+
Sbjct: 177 FTLKVREA 184
Score = 37.8 bits (87), Expect = 0.001
Identities = 6/62 (9%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 24 KIPPGFPQITEAPSTKVVEISHTTVLHCSASG-NPPPKISWIREMLPVDTSRNPRYNLLT 82
+ P ++ ++ +++ T + C+ + W++ ++N
Sbjct: 183 EAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWH 242
Query: 83 SG 84
G
Sbjct: 243 RG 244
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 77.0 bits (190), Expect = 8e-19
Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 10/109 (9%)
Query: 99 PLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRN 158
P ++ A P+IT + V T + P ++ W + + S
Sbjct: 2 PFTLDHA-------PRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQES-- 52
Query: 159 PRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207
+ + + L+I + +D G Y V N G L V G
Sbjct: 53 SKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASD-YATLDVTG 100
Score = 43.4 bits (103), Expect = 3e-06
Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 9/69 (13%)
Query: 16 PLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRN 75
P ++ A P+IT + V T + P ++ W + + S
Sbjct: 2 PFTLDHA-------PRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQES-- 52
Query: 76 PRYNLLTSG 84
+ + +
Sbjct: 53 SKIHYTNTS 61
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 78.9 bits (194), Expect = 1e-18
Identities = 20/188 (10%), Positives = 45/188 (23%), Gaps = 34/188 (18%)
Query: 40 VVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTYIKIKPNLFSP 99
+ + T L C+AS + W + + +L+
Sbjct: 6 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 65
Query: 100 LS--------------VY------SADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGN 139
+ Y +++ +T T +++ + L +
Sbjct: 66 GNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQ-GQSLTLTLESPPG 124
Query: 140 PPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSP 199
P + PR + G L ++ +D G + C
Sbjct: 125 SSPSVQCRS----------PRGKNIQGG--KTLSVSQLELQDSGTWTCTVLQNQKKVEF- 171
Query: 200 STMLYVKG 207
+ V
Sbjct: 172 KIDIVVLA 179
Score = 41.1 bits (96), Expect = 7e-05
Identities = 4/46 (8%), Positives = 14/46 (30%), Gaps = 1/46 (2%)
Query: 21 SADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE 66
+++ +T T +++ + L + P +
Sbjct: 90 QKEEVQLLVFGLTANSDTHLLQ-GQSLTLTLESPPGSSPSVQCRSP 134
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 76.6 bits (189), Expect = 1e-18
Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 2/95 (2%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGAL 172
P+ + P ++ + SG P P +SW V + + + G +L
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGL-HSL 64
Query: 173 QITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207
D G Y CVA+N G + L V
Sbjct: 65 IFEVVRASDAGAYACVAKNRAGEATF-TVQLDVLA 98
Score = 45.0 bits (107), Expect = 7e-07
Identities = 10/55 (18%), Positives = 19/55 (34%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSG 84
P+ + P ++ + SG P P +SW V + + + G
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKG 60
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 76.3 bits (188), Expect = 2e-18
Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 12/103 (11%)
Query: 104 SADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNL 163
S+ Q+ P V T L C P P+I W+++ +P+ +
Sbjct: 2 SSGSSGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPS----- 56
Query: 164 LTSGAPGALQITNSIEEDQGKYECVAENEVG-TEYSPSTMLYV 205
L + +DQG Y CVA + + S + + +
Sbjct: 57 ------PVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISI 93
Score = 50.5 bits (121), Expect = 8e-09
Identities = 13/56 (23%), Positives = 22/56 (39%)
Query: 21 SADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNP 76
S+ Q+ P V T L C P P+I W+++ +P+ +P
Sbjct: 2 SSGSSGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSP 57
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 75.8 bits (187), Expect = 2e-18
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGAL 172
P + V VL CS G P P+I+W+ P+ +R+ L
Sbjct: 12 PSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARS-----TCEAGVAEL 66
Query: 173 QITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205
I +++ ED G Y C+AEN +G S + V
Sbjct: 67 HIQDALPEDHGTYTCLAENALGQVSC-SAWVTV 98
Score = 46.5 bits (111), Expect = 2e-07
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRN 75
P + V VL CS G P P+I+W+ P+ +R+
Sbjct: 12 PSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARS 57
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 75.5 bits (186), Expect = 4e-18
Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGAL 172
P P +K V + L C S PPPK+ W R V + + + L
Sbjct: 16 PMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTL 75
Query: 173 QITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207
I + ++D G Y A NE G +T L V
Sbjct: 76 LIKDVNKKDAGWYTVSAVNEAGVTTC-NTRLDVTA 109
Score = 45.9 bits (109), Expect = 5e-07
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTY 89
P P +K V + L C S PPPK+ W R V + + R +L
Sbjct: 16 PMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTD-RISLYQDNTGRVT 74
Query: 90 IKIKP 94
+ IK
Sbjct: 75 LLIKD 79
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 76.2 bits (187), Expect = 4e-18
Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 14/120 (11%)
Query: 103 YSADKIPPGF--PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPR 160
+S+ +P G +AP ++ + + LHC A G+P P+I W E + +
Sbjct: 10 HSSGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQL 69
Query: 161 YNLLTSGAP-----------GALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQ 209
++ + I +EED G YEC A N+ + + VK +
Sbjct: 70 WDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHL-TRAPRVKWVR 128
Score = 47.3 bits (112), Expect = 2e-07
Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Query: 20 YSADKIPPGF--PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPR 77
+S+ +P G +AP ++ + + LHC A G+P P+I W E + +
Sbjct: 10 HSSGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQL 69
Query: 78 YNLLTSGAPGTYIKIKPNLFSPLSVYSA 105
++ + + S +S+ +
Sbjct: 70 WDGARLDRVHIHATYHQHAASTISIDTL 97
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 79.3 bits (195), Expect = 7e-18
Identities = 30/208 (14%), Positives = 54/208 (25%), Gaps = 40/208 (19%)
Query: 26 PPGFPQITEAPSTKVVEISHTTVLHCS-----ASGNPPPKISWIREMLPVDTSRNPRYNL 80
F P +++ +S + VL C KI W ++ L +D ++
Sbjct: 119 TDAFLPFISYP--QILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSV 176
Query: 81 LTSGA----------PGTYI--------KIKPNLFSPLSVYSADKIPPGFPQITEAPSTK 122
+ G Y + N+ + + K P I T
Sbjct: 177 RGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTI 236
Query: 123 VVEISHTTVLHCSA---SGNPPPKISWIR--------EMLPVDTSRNPRYNLLTSGAPGA 171
+ + C +G P + W + PR +
Sbjct: 237 SASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYI 296
Query: 172 ---LQITNSIEEDQG-KYECVAENEVGT 195
L ED ++CV N +
Sbjct: 297 EVPLIFDPVTREDLHMDFKCVVHNTLSF 324
Score = 75.5 bits (185), Expect = 2e-16
Identities = 29/177 (16%), Positives = 52/177 (29%), Gaps = 34/177 (19%)
Query: 49 LHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAP-----------GTYI------- 90
AS +P ++W + + GTY+
Sbjct: 45 YWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNAS 104
Query: 91 -KIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCS-----ASGNPPPKI 144
K ++ L V+ F P +++ +S + VL C KI
Sbjct: 105 YCDKMSIE--LRVFEN---TDAFLPFISYP--QILTLSTSGVLVCPDLSEFTRDKTDVKI 157
Query: 145 SWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPST 201
W ++ L +D ++ + L + + ED G Y CV + T
Sbjct: 158 QWYKDSLLLDKDNEKFLSVRGTTH---LLVHDVALEDAGYYRCVLTFAHEGQQYNIT 211
Score = 42.0 bits (98), Expect = 5e-05
Identities = 15/110 (13%), Positives = 28/110 (25%), Gaps = 5/110 (4%)
Query: 1 TCIGTYI--KIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSA---SG 55
C+ T+ + N+ + + K P I T + + C +G
Sbjct: 196 RCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTG 255
Query: 56 NPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTYIKIKPNLFSPLSVYSA 105
P + W S P + + + PL
Sbjct: 256 TPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPV 305
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 74.7 bits (184), Expect = 7e-18
Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 2/95 (2%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGAL 172
P +AP V+ + C SG P P +SW + PV + + +G +L
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGV-HSL 68
Query: 173 QITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207
I D G Y C+A N G S L V
Sbjct: 69 IIEPVTSRDAGIYTCIATNRAGQNSF-SLELVVAA 102
Score = 44.7 bits (106), Expect = 1e-06
Identities = 14/55 (25%), Positives = 22/55 (40%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSG 84
P +AP V+ + C SG P P +SW + PV + + +G
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENG 64
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 78.2 bits (192), Expect = 1e-17
Identities = 29/194 (14%), Positives = 51/194 (26%), Gaps = 27/194 (13%)
Query: 30 PQITEAPSTKVVEISHTTVLHC-SASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGT 88
PQ T + + C S G PP +I+W ++ + + L + +
Sbjct: 118 PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTS 177
Query: 89 YIKIKP--------------NLFSPLSVYSADKIPPGFPQ--ITEAPSTKVVEISHTTVL 132
+ P + + +P + L
Sbjct: 178 LWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATL 237
Query: 133 HCSASGNPPP-KISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAEN 191
C A NP P +W M P+ P + + L I + C N
Sbjct: 238 TCDARSNPEPTGYNWSTTMGPL-----PPFAVAQGAQ---LLIRPVDKPINTTLICNVTN 289
Query: 192 EVGTEYSPSTMLYV 205
+G + V
Sbjct: 290 ALGAR-QAELTVQV 302
Score = 64.3 bits (156), Expect = 1e-12
Identities = 31/207 (14%), Positives = 59/207 (28%), Gaps = 36/207 (17%)
Query: 32 ITEAPSTKVVEISHTTVLHCSASGNPPP-----KISWIREMLPVDT-----------SRN 75
+ +AP+ + + L C +++W R S +
Sbjct: 3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62
Query: 76 PRYNLLTSGAPGTY----IKIKPNLFSPLSVY--SADKIPPGF------------PQITE 117
R + + +++ Y P G PQ T
Sbjct: 63 KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTA 122
Query: 118 APSTKVVEISHTTVLHC-SASGNPPPKISWIREMLPVD-TSRNPRYNLLTSGAPGALQIT 175
+ + C S G PP +I+W ++ + TS+ P + T +
Sbjct: 123 EVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILV 182
Query: 176 NSIEEDQGKYECVAENEVGTEYSPSTM 202
S + D C E+E + T+
Sbjct: 183 PSSQVDGKNVTCKVEHESFEKPQLLTV 209
Score = 49.7 bits (118), Expect = 1e-07
Identities = 17/112 (15%), Positives = 33/112 (29%), Gaps = 21/112 (18%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPP-----KISWIREMLPVDT-----------SRN 158
+ +AP+ + + L C +++W R S +
Sbjct: 3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62
Query: 159 PRYNLLTSGAP-----GALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205
R + + +L++ ED+G Y C+ S L V
Sbjct: 63 KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 74.0 bits (182), Expect = 1e-17
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 5/102 (4%)
Query: 106 DKIPPGFPQITE-APSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTS-RNPRYNL 163
+K P + + V ++T C A GNP P + W++ R Y +
Sbjct: 1 NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKV 60
Query: 164 LTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205
+L + + + D+G Y CV ENE G+ + L V
Sbjct: 61 RNQH--WSLIMESVVPSDKGNYTCVVENEYGSINH-TYHLDV 99
Score = 40.9 bits (96), Expect = 2e-05
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 23 DKIPPGFPQITE-APSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSR 74
+K P + + V ++T C A GNP P + W++
Sbjct: 1 NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEH 53
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 76.2 bits (187), Expect = 2e-17
Identities = 11/84 (13%), Positives = 25/84 (29%), Gaps = 2/84 (2%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE--MLPVDTSRNPRYNLLTSGAPG 170
++ + C+ + P P + W+ + P T+ N G+
Sbjct: 105 LTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLS 164
Query: 171 ALQITNSIEEDQGKYECVAENEVG 194
+ + CV +N+
Sbjct: 165 VAVDLSLPKPWHLPVTCVGKNDKE 188
Score = 53.1 bits (127), Expect = 6e-09
Identities = 8/57 (14%), Positives = 17/57 (29%), Gaps = 2/57 (3%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE--MLPVDTSRNPRYNLLTSG 84
++ + C+ + P P + W+ + P T+ N G
Sbjct: 105 LTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDG 161
Score = 43.5 bits (102), Expect = 1e-05
Identities = 13/88 (14%), Positives = 28/88 (31%), Gaps = 16/88 (18%)
Query: 134 CSASGNPPPKISWIR---------------EMLPVDTSRNPRYNLLTSGAPGALQITNSI 178
S P ++SW + +++ ++ +++ S L +T +
Sbjct: 16 RRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAAN 75
Query: 179 EEDQGKYECVAENEVGTEYSPSTMLYVK 206
G Y C + E + L V
Sbjct: 76 ISHDGNYLCRMKLGET-EVTKQEHLSVV 102
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 73.6 bits (180), Expect = 2e-17
Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 8/101 (7%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKIS--WIREMLPVDTSRNPRYNLL------ 164
PQIT P T+ CSA+ + ++ W + + + Y L
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 165 TSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205
L++ N +G Y+CV N G+ YS L +
Sbjct: 71 LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 43.5 bits (102), Expect = 3e-06
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKIS--WIREMLPVDTSRNPRYNLLTS 83
PQIT P T+ CSA+ + ++ W + + + Y L +
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRA 66
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 78.6 bits (193), Expect = 3e-17
Identities = 25/208 (12%), Positives = 44/208 (21%), Gaps = 32/208 (15%)
Query: 26 PPGFPQITEAPSTKVVEISHTTVLHCSASGNPPP-KISWIREMLPVDTSRNPRYNLLTSG 84
P ++ + ++ ++ + C+ +W RE
Sbjct: 208 FKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDF 267
Query: 85 AP----------------GTYIKIKPNLFSP------LSVYSADKIPPGFPQITEAPSTK 122
G ++ N F L V +T
Sbjct: 268 NYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVD----KGFINIFPMINTTV 323
Query: 123 VVEISHTTVLHCSASGNPPPK-ISWIREMLPVDTSRNP---RYNLLTSGAPGALQITNSI 178
V L P P+ WI N L +T
Sbjct: 324 FVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLK 383
Query: 179 EEDQGKYECVAENEVGTEYSPSTMLYVK 206
+ G Y + N + +YV
Sbjct: 384 GTEGGTYTFLVSNSDVNAAI-AFNVYVN 410
Score = 77.8 bits (191), Expect = 4e-17
Identities = 34/209 (16%), Positives = 51/209 (24%), Gaps = 35/209 (16%)
Query: 26 PPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPK-ISWIRE--MLPVDTSRNPRYNLLT 82
+T V L P P+ WI P+ +
Sbjct: 310 KGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENES 369
Query: 83 SGAPGTYIKIKPNLFSPLSVYSAD--------KIPPGFPQIT------EAPSTKVVEISH 128
+ + + + + + I P +
Sbjct: 370 NIRYVSELHLT-------RLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLV 422
Query: 129 TTVLHCSASGNPPPKISWI----------REMLPVDTSRNPRYNLLTSGAPGALQITNSI 178
+L C A+G P P I W +LPVD I +S
Sbjct: 423 NGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSA 482
Query: 179 EEDQGKYECVAENEVGTEYSPSTMLYVKG 207
+ G EC A N+VG S KG
Sbjct: 483 FKHNGTVECKAYNDVGKT-SAYFNFAFKG 510
Score = 77.0 bits (189), Expect = 9e-17
Identities = 22/198 (11%), Positives = 57/198 (28%), Gaps = 23/198 (11%)
Query: 29 FPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRY---------- 78
++ + + + T++ C + P ++ ++ R+
Sbjct: 114 PAKLFLVDRSLYGKEDNDTLVRCPLTD-PEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMI 172
Query: 79 -NLLTSGAPGTY-----IKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVL 132
++ + + K L + P ++ + ++ ++ +
Sbjct: 173 KSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPA-FKAVPVVSVSKASYLLREGEEFTV 231
Query: 133 HCSASGNPPP-KISWIREMLPVDTSRNPRYNLLTSGAP---GALQITNSIEEDQGKYECV 188
C+ +W RE L I+++ D G + C
Sbjct: 232 TCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCY 291
Query: 189 AENEVGTEYSPSTMLYVK 206
A N G+ + +T L V
Sbjct: 292 ANNTFGSA-NVTTTLEVV 308
Score = 73.9 bits (181), Expect = 9e-16
Identities = 34/211 (16%), Positives = 70/211 (33%), Gaps = 21/211 (9%)
Query: 4 GTYIKIKPNLFSPLSVYSADKIPPGF---PQITEAPSTKVVEISHTTVLHCSASGNPPPK 60
++ + L + S + PG P I S +V + L C+ G
Sbjct: 8 WDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPGF---- 63
Query: 61 ISWIREMLPVDTSRNPRYNLLTSGAP----GTYI-KIKPNLFSPLSVYSADKIPPGFPQI 115
+ W E+L T+ N + +T A G Y K L + + V+ D ++
Sbjct: 64 VKWTFEILDE-TNENKQNEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRD-----PAKL 117
Query: 116 TEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQIT 175
+ + + T++ C + P ++ ++ R+ G + +
Sbjct: 118 FLVDRSLYGKEDNDTLVRCPLTD-PEVTNYSLKGCQGKPLPKDLRFIPDPKA--GIMIKS 174
Query: 176 NSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
+ C + E + S +L V+
Sbjct: 175 VKRAYHRLCLHCSVDQEGKSVLSEKFILKVR 205
Score = 56.6 bits (136), Expect = 8e-10
Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 21/127 (16%)
Query: 87 GTYIKIKPNLFSPLSVYSADKIPPGF---PQITEAPSTKVVEISHTTVLHCSASGNPPPK 143
++ + L + S + PG P I S +V + L C+ G
Sbjct: 8 WDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPGF---- 63
Query: 144 ISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTML 203
+ W E+L + + GKY C ++ + S +
Sbjct: 64 VKWTFEILDETNENKQ----------NEWITEKAEATNTGKYTCTNKHGLSN----SIYV 109
Query: 204 YVKGTQV 210
+V+
Sbjct: 110 FVRDPAK 116
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 72.0 bits (177), Expect = 6e-17
Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 4/98 (4%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPP-KISWIREMLPVDTSRNPRYNLLTSGAPGA 171
++ V E C +++W + ++ S +Y +
Sbjct: 2 AMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENS--EKYEITYEDGVAI 59
Query: 172 LQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQ 209
L + + + D G Y C N+ G + S L+VKG +
Sbjct: 60 LYVKDITKLDDGTYRCKVVNDYGEDSS-YAELFVKGVR 96
Score = 36.1 bits (84), Expect = 0.001
Identities = 6/56 (10%), Positives = 16/56 (28%), Gaps = 3/56 (5%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPP-KISWIREMLPVDTSRNPRYNLLTSG 84
++ V E C +++W + ++ S +Y +
Sbjct: 2 AMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENS--EKYEITYED 55
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 71.9 bits (177), Expect = 6e-17
Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 4/96 (4%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGA- 171
P+I E ++ V G P P+ W + + ++ S R
Sbjct: 6 PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERS--DRIYWYWPEDNVCE 63
Query: 172 LQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207
L I + ED A N G S L V+
Sbjct: 64 LVIRDVTGEDSASIMVKAINIAGETSS-HAFLLVQA 98
Score = 42.6 bits (101), Expect = 6e-06
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSG 84
P+I E ++ V G P P+ W + + ++ S R
Sbjct: 6 PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERS--DRIYWYWPE 58
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 74.9 bits (184), Expect = 7e-17
Identities = 20/96 (20%), Positives = 34/96 (35%)
Query: 101 SVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPR 160
S + + + P + + C P ISW R+ + +S
Sbjct: 7 SSALVPRGSHMYAPKLQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSN 66
Query: 161 YNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTE 196
+ + + L++T E D G Y C A N +G E
Sbjct: 67 IKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQE 102
Score = 43.3 bits (102), Expect = 1e-05
Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 1/77 (1%)
Query: 18 SVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPR 77
S + + + P + + C P ISW R+ + +S
Sbjct: 7 SSALVPRGSHMYAPKLQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSN 66
Query: 78 YNLLTSGAPGTYIKIKP 94
+ + +Y+++ P
Sbjct: 67 IKIYNTP-SASYLEVTP 82
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 71.6 bits (176), Expect = 7e-17
Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 3/94 (3%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGAL 172
P+I A ++ T L G P P +W + P + + ++
Sbjct: 3 PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALA--PELLVDAKSSTTSI 60
Query: 173 QITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
++ D G Y+ +NE+G + + + V+
Sbjct: 61 FFPSAKRADSGNYKLKVKNELGEDEA-IFEVIVQ 93
Score = 42.3 bits (100), Expect = 7e-06
Identities = 10/55 (18%), Positives = 16/55 (29%), Gaps = 2/55 (3%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSG 84
P+I A ++ T L G P P +W + P +
Sbjct: 3 PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALA--PELLVDAKS 55
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 71.8 bits (176), Expect = 7e-17
Identities = 26/110 (23%), Positives = 38/110 (34%), Gaps = 14/110 (12%)
Query: 98 SPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSA-SGNPPPKISWIREMLPVDTS 156
+PL+ S P E ++ V C+A S +P + W R S
Sbjct: 1 APLAAPSK---PI--MVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS 55
Query: 157 RNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
R +N G L I N D G Y C N + + L+V+
Sbjct: 56 RAMDFN-------GILTIRNVQPSDAGTYVCTGSNMFAMDQG-TATLHVQ 97
Score = 42.1 bits (99), Expect = 8e-06
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 6/53 (11%)
Query: 15 SPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSA-SGNPPPKISWIRE 66
+PL+ S P E ++ V C+A S +P + W R
Sbjct: 1 APLAAPSK---PI--MVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRL 48
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 71.6 bits (176), Expect = 1e-16
Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 3/95 (3%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGAL 172
PQI + P + V + L +G P +W++ + S + S L
Sbjct: 8 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQES--EHMKVENSENGSKL 65
Query: 173 QITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207
I + +E G Y + EN++G+ + L V
Sbjct: 66 TILAARQEHCGCYTLLVENKLGSRQA-QVNLTVVD 99
Score = 40.8 bits (96), Expect = 4e-05
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSG 84
PQI + P + V + L +G P +W++ + S + S
Sbjct: 8 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQES--EHMKVENSE 60
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 70.8 bits (174), Expect = 2e-16
Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 5/97 (5%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPG-- 170
P + C +GNP PKI W ++ + + + G
Sbjct: 9 PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISP--KSDHYTIQRDLDGTC 66
Query: 171 ALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207
+L T S +D G Y +A N G + L V+
Sbjct: 67 SLHTTASTLDDDGNYTIMAANPQGRISC-TGRLMVQA 102
Score = 41.2 bits (97), Expect = 2e-05
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 2/60 (3%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTY 89
P + C +GNP PKI W ++ + + + GT
Sbjct: 9 PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISP--KSDHYTIQRDLDGTC 66
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 70.1 bits (172), Expect = 5e-16
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Query: 109 PPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGA 168
PP T + ++ L G P P++ W + P+DTS R ++ TS
Sbjct: 21 PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTS---RVHVRTSDF 77
Query: 169 PGALQITNSIEEDQGKYECVAENEVGTEYS 198
+ + D G+YE + E + +
Sbjct: 78 DTVFFVRQAARSDSGEYELSVQIENMKDTA 107
Score = 43.1 bits (102), Expect = 5e-06
Identities = 13/49 (26%), Positives = 20/49 (40%)
Query: 26 PPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSR 74
PP T + ++ L G P P++ W + P+DTSR
Sbjct: 21 PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSR 69
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 71.0 bits (174), Expect = 5e-16
Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 4/106 (3%)
Query: 104 SADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNL 163
A++ P P T+ V C G P P++ W ++ PV + + +
Sbjct: 33 VAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPV--KESRHFQI 90
Query: 164 LTSGAPGA-LQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGT 208
L I+ +D KY C A N +G + L V+
Sbjct: 91 DYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATC-TAELLVETM 135
Score = 42.9 bits (101), Expect = 1e-05
Identities = 14/84 (16%), Positives = 25/84 (29%), Gaps = 3/84 (3%)
Query: 1 TCIGTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPK 60
N + L A++ P P T+ V C G P P+
Sbjct: 14 PTSPINANKVENEDAFLEE-VAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPE 72
Query: 61 ISWIREMLPVDTSRNPRYNLLTSG 84
+ W ++ PV + + +
Sbjct: 73 VMWFKDDNPV--KESRHFQIDYDE 94
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 74.8 bits (184), Expect = 5e-16
Identities = 30/98 (30%), Positives = 39/98 (39%), Gaps = 7/98 (7%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR--EMLPVDTSRNPRYNLLTSGAPG 170
P I E P+ V L C AS +SWI + + R +L+ G
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGT-- 398
Query: 171 ALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGT 208
L TN +D G Y C+ N VG + S L V GT
Sbjct: 399 -LNFTNVTVQDTGMYTCMVSNSVGNTTA-SATLNVTGT 434
Score = 45.1 bits (107), Expect = 5e-06
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR--EMLPVDTSRNPRYNLLTSG 84
P I E P+ V L C AS +SWI + + R +L+ G
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDG 397
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 74.4 bits (183), Expect = 7e-16
Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 5/98 (5%)
Query: 110 PGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR-EMLPVDTSRNPRYNLLTSGA 168
V+ HT C A G+PPP I W+ V N R +
Sbjct: 383 RRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPD-- 440
Query: 169 PGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
G L++ + +D G Y C+A N G S L+V+
Sbjct: 441 -GTLEVRYAQVQDNGTYLCIAANAGG-NDSMPAHLHVR 476
Score = 44.3 bits (105), Expect = 1e-05
Identities = 15/59 (25%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 27 PGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR-EMLPVDTSRNPRYNLLTSG 84
V+ HT C A G+PPP I W+ V N R + G
Sbjct: 383 RRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDG 441
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 73.7 bits (180), Expect = 8e-16
Identities = 29/202 (14%), Positives = 48/202 (23%), Gaps = 26/202 (12%)
Query: 30 PQITEAPSTKVVEISHTTVLHCS-ASGNPPPKISWIREMLPVDTSRN---PRYNLLT--- 82
P + L+C I+W + + L
Sbjct: 129 PSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHN 188
Query: 83 -----SG-----APGTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVL 132
SG ++IK ++ V I +
Sbjct: 189 PELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANI 248
Query: 133 HCSASGNP----PPKISWIREMLPVDTSRNPRYNLLTSGAP---GALQITNSIEEDQGK- 184
C+A I W + Y++LTS L N EE G
Sbjct: 249 TCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNT 308
Query: 185 YECVAENEVGTEYSPSTMLYVK 206
Y C N + +T + ++
Sbjct: 309 YTCRGHNYYFDKTL-TTTVVLE 329
Score = 61.4 bits (148), Expect = 1e-11
Identities = 23/212 (10%), Positives = 46/212 (21%), Gaps = 30/212 (14%)
Query: 23 DKIPPGFPQITEAPSTKVVEISHTTV-------LHCSASGNPPPKISWIREMLPVDTSRN 75
D +P + PS + C + + + V+ +
Sbjct: 17 DTLPAKDSKWL-NPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKI 75
Query: 76 PRYNLLTSG-APGTYIKIKP---------------NLFSPLSVYSADKIPPGFPQITEAP 119
+ + + I P
Sbjct: 76 GKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPET 135
Query: 120 STKVVEISHTTVLHCS-ASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSI 178
+ L+C I+W + + +Y+ L I N
Sbjct: 136 YELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIID-GTKYSQSG----QNLIIHNPE 190
Query: 179 EEDQGKYECVAENEVGTEYSPSTMLYVKGTQV 210
ED G+Y+C + + + K V
Sbjct: 191 LEDSGRYDCYVHYDDVRIKNDIVVSRCKILTV 222
Score = 34.0 bits (77), Expect = 0.029
Identities = 13/89 (14%), Positives = 22/89 (24%), Gaps = 6/89 (6%)
Query: 1 TCIGTYIKIKPNLFSPLSVYSADKI--PPGFPQITEAPSTKVVEISHTTVLHCSASGNP- 57
C Y ++ +S + V I + C+A
Sbjct: 198 DCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSL 257
Query: 58 ---PPKISWIREMLPVDTSRNPRYNLLTS 83
I W + Y++LTS
Sbjct: 258 LVDDVLIDWENPSGWIIGLDFGVYSILTS 286
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 73.6 bits (181), Expect = 1e-15
Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 8/97 (8%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWI--REMLPVDTSRNPRYNLLTSGAPG 170
P I +AP + L C P + W+ + SR+PR ++L G
Sbjct: 353 PFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGT-- 408
Query: 171 ALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207
L ++ + D G Y C+ N G + S L V
Sbjct: 409 -LNFSHVLLSDTGVYTCMVTNVAG-NSNASAYLNVST 443
Score = 44.0 bits (104), Expect = 1e-05
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWI--REMLPVDTSRNPRYNLLTSG 84
P I +AP + L C P + W+ + SR+PR ++L G
Sbjct: 353 PFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDG 407
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 71.2 bits (174), Expect = 1e-15
Identities = 28/203 (13%), Positives = 55/203 (27%), Gaps = 33/203 (16%)
Query: 31 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSR---------------- 74
++T V + +L +W +
Sbjct: 1 EVTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQA 60
Query: 75 -NPRYNLLTSGA----------PGTYI-KIKPNLFSPLSVYSADKIPPGFPQITEAPSTK 122
+ R + ++G+ G Y + + + Q +
Sbjct: 61 YSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNT 120
Query: 123 VVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQ 182
V+ + L C + + I W+ + + R L + L+I ED
Sbjct: 121 TVKELDSVTLTCLS-NDIGANIQWLFNSQSLQLT--ERMTLSQNN--SILRIDPIKREDA 175
Query: 183 GKYECVAENEVGTEYSPSTMLYV 205
G+Y+C N V S S L +
Sbjct: 176 GEYQCEISNPVSVRRSNSIKLDI 198
Score = 32.3 bits (73), Expect = 0.079
Identities = 10/82 (12%), Positives = 22/82 (26%), Gaps = 4/82 (4%)
Query: 4 GTYI-KIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKIS 62
G Y + + + Q + V+ + L C + + I
Sbjct: 84 GVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLS-NDIGANIQ 142
Query: 63 WIREMLPVDTSRNPRYNLLTSG 84
W+ + + R L +
Sbjct: 143 WLFNSQSLQLT--ERMTLSQNN 162
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 69.2 bits (169), Expect = 2e-15
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 8/104 (7%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPP-KISWIREMLPVDTSRNPRYNLLTS----G 167
P I+ + T+ + C PPP +I+W + +++ + RY + T G
Sbjct: 15 PIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEG 73
Query: 168 APGALQITNSIEED-QGKYECVAENEVGTEYSPSTMLYVKGTQV 210
L I+N + D Q Y C A N G++ + L +G+++
Sbjct: 74 VISTLTISNIVRADFQTIYNCTAWNSFGSD-TEIIRLKEQGSEM 116
Score = 43.7 bits (103), Expect = 3e-06
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPP-KISWIREMLPVDTSRNPRYNLLTSGAPGT 88
P I+ + T+ + C PPP +I+W + +++ + RY + T
Sbjct: 15 PIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEG 73
Query: 89 YI 90
I
Sbjct: 74 VI 75
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 72.1 bits (176), Expect = 3e-15
Identities = 20/170 (11%), Positives = 43/170 (25%), Gaps = 33/170 (19%)
Query: 46 TTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTYIKIKPNLFSPLS---- 101
T L C+AS + W + + +L+ +
Sbjct: 11 TVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLI 70
Query: 102 ----------VY------SADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKIS 145
Y +++ +T T +++ + L + P +
Sbjct: 71 IKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQ-GQSLTLTLESPPGSSPSVQ 129
Query: 146 WIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGT 195
R+PR + G L ++ +D G + C
Sbjct: 130 C----------RSPRGKNIQGG--KTLSVSQLELQDSGTWTCTVLQNQKK 167
Score = 57.9 bits (139), Expect = 3e-10
Identities = 24/188 (12%), Positives = 47/188 (25%), Gaps = 27/188 (14%)
Query: 31 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLL--------- 81
+T T +++ + L + P + P + L
Sbjct: 99 GLTANSDTHLLQ-GQSLTLTLESPPGSSPSVQCRS---PRGKNIQGGKTLSVSQLELQDS 154
Query: 82 -------TSGAPGTYIKIKPNLFSPLSVYSADKIPPGFP-QITEAPSTKVVEISHTTVLH 133
KI + + S G + + + V +++ + L
Sbjct: 155 GTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELW 214
Query: 134 CSASGNPPPK--ISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSI----EEDQGKYEC 187
A K I++ + V R + L G L +T G
Sbjct: 215 WQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTL 274
Query: 188 VAENEVGT 195
E + G
Sbjct: 275 ALEAKTGK 282
Score = 39.0 bits (90), Expect = 6e-04
Identities = 10/74 (13%), Positives = 19/74 (25%), Gaps = 15/74 (20%)
Query: 127 SHTTVLHCSASGNPPPKI--SWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGK 184
L C G PK+ S E S+ + + + G
Sbjct: 296 QLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKR-------------EKAVWVLNPEAGM 342
Query: 185 YECVAENEVGTEYS 198
++C+ +
Sbjct: 343 WQCLLSDSGQVLLE 356
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 70.3 bits (172), Expect = 6e-15
Identities = 31/186 (16%), Positives = 50/186 (26%), Gaps = 14/186 (7%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPP-PKISWIREMLPVDTSRNPRYNLLTSGAP-- 86
+ S++V L C A + + + R +
Sbjct: 83 GWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISH 142
Query: 87 -GTYIKIKPNLFSPLS--VYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPK 143
GTY S + K P + + ++ ++E + L C
Sbjct: 143 NGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLE-GNLVTLSCETKLLLQRP 201
Query: 144 ISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGT--EYSPST 201
+ + L QI + ED G Y C A E G + SP
Sbjct: 202 GLQLYF-----SFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPEL 256
Query: 202 MLYVKG 207
L V G
Sbjct: 257 ELQVLG 262
Score = 67.6 bits (165), Expect = 6e-14
Identities = 31/181 (17%), Positives = 43/181 (23%), Gaps = 20/181 (11%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNP-PPKISWIREMLPVDTSRNPRYNLL--TSGAP 86
IT P V T LHC P W TS P Y + +
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS-TPSYRITSASVNDS 60
Query: 87 GTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPP-PKIS 145
G Y + + Q S++V L C A + +
Sbjct: 61 GEYRCQRGLSGRSDPIQLEIHRGWLLLQ----VSSRVFTEGEPLALRCHAWKDKLVYNVL 116
Query: 146 WIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205
+ R L I + G Y C + S + V
Sbjct: 117 YYRNGKAFKFFHW----------NSNLTILKTNISHNGTYHCSGMGKHRYT-SAGISVTV 165
Query: 206 K 206
K
Sbjct: 166 K 166
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 67.9 bits (166), Expect = 1e-14
Identities = 31/188 (16%), Positives = 52/188 (27%), Gaps = 26/188 (13%)
Query: 26 PPGFPQITEAPSTKVVEISHTTVLHCSASGNPPP-KISWIREMLPVDTSRNPRYNL-LTS 83
PP + P V + L C + +P I W + T P Y +
Sbjct: 2 PPK-AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANN 60
Query: 84 GAPGTYI-KIKPNLFSP---LSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGN 139
G Y + S L+V + + P + E T +L C + +
Sbjct: 61 NDSGEYTCQTGQTSLSDPVHLTVLFE-------WLVLQTPHLEFQE-GETIMLRCHSWKD 112
Query: 140 PPP-KISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYS 198
P K+++ + S I + G Y C S
Sbjct: 113 KPLVKVTFFQNGKSQKFSHLD----------PTFSIPQANHSHSGDYHCTGNIGYTLFSS 162
Query: 199 PSTMLYVK 206
+ V+
Sbjct: 163 KPVTITVQ 170
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 66.0 bits (161), Expect = 2e-14
Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 5/85 (5%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSG--APG 170
P++ ++ + GNPPP + W+ P+ S+ G + G
Sbjct: 9 PRVVSLEEPELR---LEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEG 65
Query: 171 ALQITNSIEEDQGKYECVAENEVGT 195
L + G Y +A+N +GT
Sbjct: 66 CLLFNKPTHYNNGNYTLIAKNPLGT 90
Score = 38.3 bits (89), Expect = 3e-04
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSG 84
P++ ++ + GNPPP + W+ P+ S+ G
Sbjct: 9 PRVVSLEEPELR---LEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEG 60
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 68.7 bits (167), Expect = 6e-14
Identities = 23/213 (10%), Positives = 50/213 (23%), Gaps = 31/213 (14%)
Query: 1 TCIGTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPK 60
TC +++YS FP + V + C A
Sbjct: 262 TCAVILGNQSQETLQTVTIYS-------FPAPNVILTKPEVSEGTEVTVKCEAHPRAKVT 314
Query: 61 ISWIREMLPVDTSRNPRYNLLTSGAPGTYI------KIKPNLFSPLSVYSADKIPPGFPQ 114
++ + ++ ++ + + P
Sbjct: 315 LNGVPAQPLGPRAQL-LLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRL-D 372
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQI 174
+ P + C A GNP P++ +++ +
Sbjct: 373 ERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI---------------GES 417
Query: 175 TNSIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207
+ +G Y C A + G + + V
Sbjct: 418 VTVTRDLEGTYLCRARSTQGEV-TREVTVNVLS 449
Score = 64.9 bits (157), Expect = 1e-12
Identities = 25/175 (14%), Positives = 53/175 (30%), Gaps = 16/175 (9%)
Query: 31 QITEAPSTKVVEISHTTVLHCSASGNPPPKISW----IREMLPVDTSRNPRYNLLTSGAP 86
Q + +PS ++ + ++ CS S + P + ++ L + + Y L
Sbjct: 1 QTSVSPSKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVYELSNVQED 60
Query: 87 GTYI--KIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPP-- 142
+ P+ S + P ++ PS + V L C G P
Sbjct: 61 SQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPV--GKNLTLRCQVEGGAPRAN 118
Query: 143 -KISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTE 196
+ +R R + A + + + C E ++ +
Sbjct: 119 LTVVLLR-----GEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQ 168
Score = 52.6 bits (125), Expect = 2e-08
Identities = 24/188 (12%), Positives = 51/188 (27%), Gaps = 28/188 (14%)
Query: 26 PPGFPQITEAPSTKVVEISHTTVLHCSASGNPP---PKISWIREMLPVDTSRNPRYNLLT 82
P P +P V+ T + CS G P ++ ++ + + +
Sbjct: 187 LPATPPQLVSPRVLEVDTQGT--VVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFS 244
Query: 83 SGA--------PGTYIKIKPNLFSPLSVYSADKIP-PGFPQITEAPSTKVVEISHTTVLH 133
+ A GT + S + + FP + V +
Sbjct: 245 AKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVK 304
Query: 134 CSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEV 193
C A ++ + ++ L + + E++ + C A EV
Sbjct: 305 CEAHPRAKVTLNGVPAQPLGPRAQ--------------LLLKATPEDNGRSFSCSATLEV 350
Query: 194 GTEYSPST 201
+
Sbjct: 351 AGQLIHKN 358
Score = 42.9 bits (100), Expect = 3e-05
Identities = 24/198 (12%), Positives = 50/198 (25%), Gaps = 29/198 (14%)
Query: 26 PPGFPQITEAPSTKVVEISHTTVLHCSASGNPPP---KISWIREMLPVDTSRNPRYNLLT 82
P ++ PS + V L C G P + +R +
Sbjct: 85 TPERVELAPLPSWQPV--GKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEV 142
Query: 83 SG----------------APGTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEI 126
+ LF S + + S +V+E+
Sbjct: 143 TTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEV 202
Query: 127 SHTTVLHCSASGNPP---PKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQG 183
+ CS G P ++ ++ + + ++ A + ED+G
Sbjct: 203 DTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKA-----SVSVTAEDEG 257
Query: 184 KYECVAENEVGTEYSPST 201
+G + +
Sbjct: 258 TQRLTCAVILGNQSQETL 275
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 64.4 bits (157), Expect = 6e-14
Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 6/86 (6%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPR---YNLLTSGAP 169
P IT + H + + GNP P + W ++ S+ + +
Sbjct: 5 PTITF---LESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYH 61
Query: 170 GALQITNSIEEDQGKYECVAENEVGT 195
G LQ+ N + G Y +A+NE G
Sbjct: 62 GCLQLDNPTHMNNGDYTLIAKNEYGK 87
Score = 36.6 bits (85), Expect = 8e-04
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSR 74
P IT + H + + GNP P + W ++ S+
Sbjct: 5 PTITF---LESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESK 46
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 63.2 bits (154), Expect = 1e-13
Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 8/94 (8%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGAL 172
+ +V L C I+W+R+ + + S R + +
Sbjct: 4 GSSGVEVESFLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLAES--NRTRI----TGEEV 56
Query: 173 QITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
++ +S+ D G Y CV + G++ + + V
Sbjct: 57 EVQDSVPADSGLYACVTSSPSGSD-TTYFSVNVS 89
Score = 37.0 bits (86), Expect = 6e-04
Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 1/45 (2%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSR 74
+ +V L C I+W+R+ + + S
Sbjct: 4 GSSGVEVESFLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLAESN 47
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 65.9 bits (160), Expect = 1e-13
Identities = 31/205 (15%), Positives = 46/205 (22%), Gaps = 43/205 (20%)
Query: 31 QITEAPSTKVVEISHTTVLHCSASGNP----PPKISWIREMLPVDTSRNPRYNLLTSGAP 86
IT T L C + +P P I W+
Sbjct: 2 SITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIY 61
Query: 87 GTYIKIKPNLFSPLSVYSAD----------------------KIPPGF------------ 112
Y S K PG
Sbjct: 62 DNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK 121
Query: 113 PQITEAPSTKVVEISHTTVLHCSAS-GNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGA 171
P T EI + L C G+ P + W + + +
Sbjct: 122 PSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTS----PV 177
Query: 172 LQITNSIEEDQGKYECVAENEVGTE 196
+ + N+ E G Y C +N VG++
Sbjct: 178 ISVKNASSEYSGTYSCTVQNRVGSD 202
Score = 37.7 bits (87), Expect = 0.001
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSAS-GNPPPKISWIRE 66
P T EI + L C G+ P + W +
Sbjct: 122 PSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKL 159
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 63.1 bits (154), Expect = 2e-13
Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGAL 172
I + + V L C S P + W+++ + S +Y+++ G L
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKS--QKYDVVCEGTMAML 65
Query: 173 QITNSIEEDQGKYECVAENEVGT 195
I + +D G+Y C E T
Sbjct: 66 VIRGASLKDAGEYTCEVEASKST 88
Score = 35.7 bits (83), Expect = 0.002
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSG 84
I + + V L C S P + W+++ + S +Y+++ G
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKS--QKYDVVCEG 60
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 65.7 bits (159), Expect = 2e-13
Identities = 29/236 (12%), Positives = 48/236 (20%), Gaps = 70/236 (29%)
Query: 30 PQITEAPSTKVVEISHTTVLHCS---ASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAP 86
+ + V T L CS A+ PP ISW++ P +++ + N G
Sbjct: 3 MTVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEG 62
Query: 87 ----------------------------------------GTYIKIKPNLFSPLSVYSAD 106
G Y
Sbjct: 63 LGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDA 122
Query: 107 K--------IPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRN 158
K P V+ + + C + ++W +
Sbjct: 123 KSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYET 182
Query: 159 PRYNLLTSGAP-------------------GALQITNSIEEDQGKYECVAENEVGT 195
Y L + L I + D G+ C G
Sbjct: 183 GTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGE 238
Score = 42.2 bits (98), Expect = 4e-05
Identities = 7/77 (9%), Positives = 16/77 (20%)
Query: 26 PPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGA 85
P V+ + + C + ++W + Y L +
Sbjct: 133 TPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKN 192
Query: 86 PGTYIKIKPNLFSPLSV 102
+ S
Sbjct: 193 QFGITWFSSEIAGRASF 209
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 62.8 bits (153), Expect = 3e-13
Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 9/100 (9%)
Query: 107 KIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTS 166
K F + V H L + + ++ W++ + S +Y +
Sbjct: 13 KKSTAF--QKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMS-GSKYIFESI 68
Query: 167 GAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
GA L I+ D Y+CV E ST L+VK
Sbjct: 69 GAKRTLTISQCSLADDAAYQCVVGGEKC-----STELFVK 103
Score = 33.5 bits (77), Expect = 0.011
Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 4/61 (6%)
Query: 24 KIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTS 83
K F + V H L + + ++ W++ + S +Y +
Sbjct: 13 KKSTAF--QKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMS-GSKYIFESI 68
Query: 84 G 84
G
Sbjct: 69 G 69
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 66.3 bits (161), Expect = 3e-13
Identities = 32/205 (15%), Positives = 52/205 (25%), Gaps = 25/205 (12%)
Query: 17 LSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNP 76
L+V + Q + SA+G PP +SW + +
Sbjct: 125 LTVMAKPTNWIEGTQAVLRAKK-GQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEI 183
Query: 77 RYNLLTSGAPGTYIKIKPNLFSPLSVYS------ADKIPPGFP-QITEAPSTKVVEISHT 129
R T Y + P+ + + D+ + P +
Sbjct: 184 RNPNGTVTVISRYR-LVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGN 242
Query: 130 TV-------LHCSASGNPPP-KISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEED 181
L C A NPP + W + + L
Sbjct: 243 WYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTL-------FFKGPINYSL 295
Query: 182 QGKYECVAENEVGTEYSPSTMLYVK 206
G Y C A N +GT S + +
Sbjct: 296 AGTYICEATNPIGTR-SGQVEVNIT 319
Score = 61.3 bits (148), Expect = 2e-11
Identities = 33/229 (14%), Positives = 58/229 (25%), Gaps = 42/229 (18%)
Query: 18 SVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPP----KISWIREMLP---- 69
S+ ++ Q+ + + I VLHCS + P +++W +
Sbjct: 3 SMTGGQQMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQN 62
Query: 70 -----------VDTSRNPRYNLLTSGAPGTYIKIKP---------------------NLF 97
V R L I++
Sbjct: 63 VAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQ 122
Query: 98 SPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSR 157
L+V + Q + SA+G PP +SW + +
Sbjct: 123 LNLTVMAKPTNWIEGTQAVLRAKK-GQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQ 181
Query: 158 NPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
R T ++ S E Q C+ + S L V+
Sbjct: 182 EIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRF-KESLTLNVQ 229
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 65.5 bits (159), Expect = 4e-13
Identities = 26/216 (12%), Positives = 53/216 (24%), Gaps = 37/216 (17%)
Query: 1 TCIGTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPK 60
TC +++YS FP + V + C A
Sbjct: 77 TCAVILGNQSQETLQTVTIYS-------FPAPNVILTKPEVSEGTEVTVKCEAHPRAKVT 129
Query: 61 ISWIREMLPVDTSRNPRYNLLTSGAPGTYI------KIKPNLFSPLSVYSADKIPPGFPQ 114
++ + ++ ++ + + P
Sbjct: 130 LNGVPAQPLGPRAQ-LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRL-D 187
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE---MLPVDTSRNPRYNLLTSGAPGA 171
+ P + C A GNP P++ +++ LP+ S
Sbjct: 188 ERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVT----------- 236
Query: 172 LQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207
+ +G Y C A + G + + V
Sbjct: 237 -------RDLEGTYLCRARSTQGEV-TREVTVNVLS 264
Score = 45.8 bits (108), Expect = 3e-06
Identities = 27/191 (14%), Positives = 53/191 (27%), Gaps = 43/191 (22%)
Query: 25 IPPGFPQITEAPSTKVVEISHTTVLHCSASGNPP---PKISWI---REMLPVDTSRNPRY 78
+P PQ+ V+E+ + CS G P ++ + + P T N +
Sbjct: 2 LPATPPQLVSPR---VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSF 58
Query: 79 NLLTSGAPG-------------TYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVE 125
+ S + +++YS FP + V
Sbjct: 59 SAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYS-------FPAPNVILTKPEVS 111
Query: 126 ISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKY 185
+ C A ++ + G L + + E++ +
Sbjct: 112 EGTEVTVKCEAHPRAKVTLNGVP--------------AQPLGPRAQLLLKATPEDNGRSF 157
Query: 186 ECVAENEVGTE 196
C A EV +
Sbjct: 158 SCSATLEVAGQ 168
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 64.1 bits (155), Expect = 6e-13
Identities = 39/201 (19%), Positives = 60/201 (29%), Gaps = 41/201 (20%)
Query: 37 STKVVEISHTTVLHCSASGNPPPKISWIR--EMLPVDTSRNPRYNLLTSGA--PGTYI-K 91
+ + +L C I+W + +M+ T ++NL ++ G Y K
Sbjct: 11 KVYDYQEDGSVLLTC---DAEAKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCK 67
Query: 92 IKPNLFSPLSVY----SADKIPPGFPQITEAPSTKV--------------------VEIS 127
N PL VY SAD + +A V IS
Sbjct: 68 GSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSIS 127
Query: 128 HTTV-LHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIE-EDQGKY 185
TTV L C P +I W + + + L + E E G Y
Sbjct: 128 GTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDH---LSLKEFSELEQSGYY 182
Query: 186 ECVAENEVGTEYSPSTMLYVK 206
C + LY++
Sbjct: 183 VCYPRGSKPE--DANFYLYLR 201
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 61.3 bits (149), Expect = 8e-13
Identities = 17/99 (17%), Positives = 35/99 (35%), Gaps = 8/99 (8%)
Query: 109 PPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGA 168
F + A E + L C + +++W ++ + +S + + G
Sbjct: 8 KVVFAKEQPAHREVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSS--SKVRVEAVGC 64
Query: 169 PGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207
L + + + + G+Y C A + S L V G
Sbjct: 65 TRRLVVQQAGQAEAGEYSCEAGGQQL-----SFRLQVAG 98
Score = 34.7 bits (80), Expect = 0.004
Identities = 8/59 (13%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 26 PPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSG 84
F + A E + L C + +++W ++ + +S + + G
Sbjct: 8 KVVFAKEQPAHREVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSS--SKVRVEAVG 63
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 63.1 bits (153), Expect = 1e-12
Identities = 36/195 (18%), Positives = 60/195 (30%), Gaps = 40/195 (20%)
Query: 31 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLP----VDTSRNPRYNLLTSGAP 86
+T V++ + L C ++ IR L + ++ R LL P
Sbjct: 4 TVTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLP 63
Query: 87 ----------------GTYI-KIKPNLFS---PLSVYSADKIPPGFPQITEAPSTKVVEI 126
G Y + L+V +I E P T V+
Sbjct: 64 LGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQ- 122
Query: 127 SHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSI---EEDQG 183
L C A G P ++SW +P +TS G Q+T+ + +
Sbjct: 123 -----LTCQARGYPLAEVSWQNVSVPANTS-------HIRTPEGLYQVTSVLRLKPQPSR 170
Query: 184 KYECVAENEVGTEYS 198
+ C+ N E +
Sbjct: 171 NFSCMFWNAHMKELT 185
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 64.5 bits (156), Expect = 1e-12
Identities = 29/217 (13%), Positives = 52/217 (23%), Gaps = 33/217 (15%)
Query: 21 SADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNL 80
S P P + I + + P I+W + N
Sbjct: 118 SCFNSPMKLPVHKLYIEYGIQRI-TCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEG 176
Query: 81 LT----------SG-----APGTYIKIKPNLFSPLSVYSADKIPPGFPQITEAP---STK 122
+ +G +L L+V P + +P
Sbjct: 177 MNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVY 236
Query: 123 VVEISHTTVLHCSA----SGNPPPKISWIRE-MLPVDTSRNPRYN-------LLTSGAPG 170
E ++ C+ + ++ W + P D + + N
Sbjct: 237 EKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQ 296
Query: 171 ALQITNSIEEDQG-KYECVAENEVGTEYSPSTMLYVK 206
L I ED Y C A + G + + K
Sbjct: 297 ILSIKKVTSEDLKRSYVCHARSAKGEVAK-AAKVKQK 332
Score = 60.3 bits (145), Expect = 4e-11
Identities = 27/190 (14%), Positives = 46/190 (24%), Gaps = 33/190 (17%)
Query: 43 ISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTS--GAPGTYIKIKP------ 94
H + S + + + W D + L + + +P
Sbjct: 32 FEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDT 91
Query: 95 --------------NLFSPLSVY---SADKIPPGFPQITEAPSTKVVEISHTTVLHCSAS 137
+ PL V S P P + I +
Sbjct: 92 GNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRI-TCPNVDGYFP 150
Query: 138 GNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAE-NEVGTE 196
+ P I+W + N L ++ + G Y CV E G
Sbjct: 151 SSVKPTITWYMGCYKIQNFNNVIPE------GMNLSFLIALISNNGNYTCVVTYPENGRT 204
Query: 197 YSPSTMLYVK 206
+ + L VK
Sbjct: 205 FHLTRTLTVK 214
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 60.2 bits (146), Expect = 2e-12
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 7/84 (8%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGAL 172
+ + +V L C I+W+R+ + + S R +
Sbjct: 10 WGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRIT------GEEV 62
Query: 173 QITNSIEEDQGKYECVAENEVGTE 196
++ +SI D G Y CV + G++
Sbjct: 63 EVRDSIPADSGLYACVTSSPSGSD 86
Score = 35.2 bits (81), Expect = 0.002
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPR 77
+ + +V L C I+W+R+ + + S R
Sbjct: 10 WGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTR 56
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 64.4 bits (156), Expect = 3e-12
Identities = 26/164 (15%), Positives = 45/164 (27%), Gaps = 6/164 (3%)
Query: 49 LHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTYIKIKPNLFSPLSVYSADKI 108
++ + P W P T + T + + + D++
Sbjct: 96 VYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEV 155
Query: 109 -----PPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNL 163
P V CSA G + + V + +
Sbjct: 156 KVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKV 215
Query: 164 LTS-GAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
+S + + N+ + D GKY C+ E G S L VK
Sbjct: 216 TSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK 259
Score = 31.3 bits (70), Expect = 0.23
Identities = 17/191 (8%), Positives = 45/191 (23%), Gaps = 19/191 (9%)
Query: 26 PPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGA 85
P V CSA G + + V + + +S
Sbjct: 161 PCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRR 220
Query: 86 PGTYIKIKPNLFSPLSVY------SADKIPPGFPQITEA------PSTKVVEISHTTV-- 131
+ Y + ++ ++ + T +
Sbjct: 221 FIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWI 280
Query: 132 -LHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAE 190
L+ ++ P ++ E S N R + ++ + +I + + + + +
Sbjct: 281 QLNANSINGDGPIVAREVEYCTASGSWNDRQPVDST----SYKIGHLDPDTEYEISVLLT 336
Query: 191 NEVGTEYSPST 201
Sbjct: 337 RPGEGGTGSPG 347
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 60.0 bits (146), Expect = 3e-12
Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 8/96 (8%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR--EMLPVDTSRNPRYNLLTSGAPG 170
I + V + + S ++ W++ L + S RY G
Sbjct: 9 VLIVTPLEDQQVFVGDRVEMAVEVS-EEGAQVMWMKNGVELTREDSFKARYRFKKDGKRH 67
Query: 171 ALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
L ++ ++ED+G+Y+ + L V+
Sbjct: 68 ILIFSDVVQEDRGRYQVITNGGQC-----EAELIVE 98
Score = 34.2 bits (79), Expect = 0.005
Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 3/57 (5%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR--EMLPVDTSRNPRYNLLTSG 84
I + V + + S ++ W++ L + S RY G
Sbjct: 9 VLIVTPLEDQQVFVGDRVEMAVEVS-EEGAQVMWMKNGVELTREDSFKARYRFKKDG 64
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 61.4 bits (149), Expect = 3e-12
Identities = 25/184 (13%), Positives = 51/184 (27%), Gaps = 25/184 (13%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPP-KISWIREMLPVDTSRNPRY-NLLTSGAPG 87
+ P V + L C + +P W + + + + + T G
Sbjct: 8 AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVNDSG 67
Query: 88 TYI-KIKPNLFSP---LSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPP- 142
Y + + S L V+ + +AP E L C + N
Sbjct: 68 EYRCQTNLSTLSDPVQLEVHIG-------WLLLQAPRWVFKE-EDPIHLRCHSWKNTALH 119
Query: 143 KISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTM 202
K+++++ + I + +D G Y C S +
Sbjct: 120 KVTYLQNGKDRKYFHHNSD----------FHIPKATLKDSGSYFCRGLVGSKNVSSETVN 169
Query: 203 LYVK 206
+ +
Sbjct: 170 ITIT 173
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 62.1 bits (150), Expect = 3e-12
Identities = 28/177 (15%), Positives = 53/177 (29%), Gaps = 14/177 (7%)
Query: 36 PSTKVVEISHTTVLHCSASGNPPPKISWIREM---LPVDTSRNPRYNLL-----TSGAPG 87
S + +I + L CS +G P SW ++ L + + L + G
Sbjct: 8 ESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEH 67
Query: 88 TYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPP---PKI 144
+Y+ L FP+ E + +E + CS + P +I
Sbjct: 68 SYLCTATCESRKLEK-GIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEI 126
Query: 145 SWIR--EMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSP 199
++ ++ + T IE+ C A+ + S
Sbjct: 127 DLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSV 183
Score = 27.8 bits (61), Expect = 2.0
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 27 PGFPQITEAPSTKVVEISHTTVLHCSASGNPP---PKISWIRE 66
FP+ E + +E + CS + P +I ++
Sbjct: 89 YSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKG 131
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 59.7 bits (145), Expect = 3e-12
Identities = 23/100 (23%), Positives = 33/100 (33%), Gaps = 9/100 (9%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGAL 172
+ T+ TK T L C S + W + + RY+L G L
Sbjct: 9 ARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDG--GRYSLKQDGTRCEL 64
Query: 173 QITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
QI + D G+Y C+ E S L V+
Sbjct: 65 QIHDLSVADAGEYSCMCGQERT-----SATLTVRALPARF 99
Score = 33.9 bits (78), Expect = 0.010
Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 4/55 (7%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSG 84
+ T+ TK T L C S + W + + RY+L G
Sbjct: 9 ARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDG--GRYSLKQDG 59
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 58.9 bits (143), Expect = 5e-12
Identities = 17/99 (17%), Positives = 26/99 (26%), Gaps = 8/99 (8%)
Query: 110 PGFPQITEAPSTKVVEISHTTVLHCSAS-GNPPPKISWIREMLPVDTSRNPRYNLLTSGA 168
G IT+ T V + C S + W V +S R+ G
Sbjct: 6 SGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSS--SRFQATRQGR 63
Query: 169 PGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207
L + + D G+ L V+
Sbjct: 64 KYILVVREAAPSDAGEVVFSVRGLTS-----KASLIVRE 97
Score = 33.5 bits (77), Expect = 0.009
Identities = 12/59 (20%), Positives = 17/59 (28%), Gaps = 3/59 (5%)
Query: 27 PGFPQITEAPSTKVVEISHTTVLHCSAS-GNPPPKISWIREMLPVDTSRNPRYNLLTSG 84
G IT+ T V + C S + W V +S R+ G
Sbjct: 6 SGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSS--SRFQATRQG 62
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 58.8 bits (143), Expect = 6e-12
Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 8/94 (8%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGAL 172
++ + V + T S P W + P+ S P ++ G L
Sbjct: 6 IEVEKPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAAS--PDCEIIEDGKKHIL 62
Query: 173 QITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
+ N G+ A N + L VK
Sbjct: 63 ILHNCQLGMTGEVSFQAANTKS-----AANLKVK 91
Score = 32.7 bits (75), Expect = 0.017
Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 3/55 (5%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSG 84
++ + V + T S P W + P+ S P ++ G
Sbjct: 6 IEVEKPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAAS--PDCEIIEDG 57
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 58.5 bits (142), Expect = 7e-12
Identities = 21/100 (21%), Positives = 30/100 (30%), Gaps = 10/100 (10%)
Query: 107 KIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTS 166
K P ++ P + V V K+ W R + S +Y L T
Sbjct: 5 KKPV--SAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISAS--NKYGLATE 59
Query: 167 GAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
G L + DQG Y +A + L V
Sbjct: 60 GTRHTLTVREVGPADQGSYAVIAGSSKV-----KFDLKVI 94
Score = 33.5 bits (77), Expect = 0.010
Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 5/61 (8%)
Query: 24 KIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTS 83
K P ++ P + V V K+ W R + S +Y L T
Sbjct: 5 KKPV--SAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISAS--NKYGLATE 59
Query: 84 G 84
G
Sbjct: 60 G 60
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 58.9 bits (143), Expect = 7e-12
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 3/83 (3%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGAL 172
++ + + V+ + V C S W + + V S R + G L
Sbjct: 9 LEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPS--KRITISHVGRFHKL 65
Query: 173 QITNSIEEDQGKYECVAENEVGT 195
I + ED+G Y V + +
Sbjct: 66 VIDDVRPEDEGDYTFVPDGYALS 88
Score = 32.7 bits (75), Expect = 0.022
Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 3/55 (5%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSG 84
++ + + V+ + V C S W + + V S R + G
Sbjct: 9 LEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPS--KRITISHVG 60
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 60.7 bits (147), Expect = 7e-12
Identities = 29/185 (15%), Positives = 52/185 (28%), Gaps = 21/185 (11%)
Query: 27 PGFPQITEAPSTKVVEISHTTVLHCSASGNPPP-KISWIREMLPVDTSRNPRYNL--LTS 83
P P+++ P + L C+ + W + + N N+
Sbjct: 2 PQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET-NSSLNIVNAKF 60
Query: 84 GAPGTYI-KIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPP- 141
G Y + + S + +A + V+E L C N
Sbjct: 61 EDSGEYKCQHQQVNESE----PVYLEVFSDWLLLQASAEVVME-GQPLFLRCHGWRNWDV 115
Query: 142 PKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPST 201
K+ + ++ L + ITN+ ED G Y C + S
Sbjct: 116 YKVIYYKD----------GEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPL 165
Query: 202 MLYVK 206
+ V
Sbjct: 166 NITVI 170
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 59.0 bits (143), Expect = 8e-12
Identities = 23/112 (20%), Positives = 34/112 (30%), Gaps = 8/112 (7%)
Query: 101 SVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPR 160
S S+ + VL C P ++ W ++ V S P
Sbjct: 2 SSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVES--PA 58
Query: 161 YNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
L L + ED G+Y C ++E S S + V V I
Sbjct: 59 LLLQKEDTVRRLVLPAVQLEDSGEYLCEIDDE-----SASFTVTVTEPPVRI 105
Score = 32.8 bits (75), Expect = 0.024
Identities = 11/67 (16%), Positives = 17/67 (25%), Gaps = 3/67 (4%)
Query: 18 SVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPR 77
S S+ + VL C P ++ W ++ V S P
Sbjct: 2 SSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVES--PA 58
Query: 78 YNLLTSG 84
L
Sbjct: 59 LLLQKED 65
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 57.7 bits (140), Expect = 2e-11
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGAL 172
+I + + V + L C S N P K W + LPV S R ++ G L
Sbjct: 8 LKILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQES--DRLKVVQKGRIHKL 63
Query: 173 QITNSIEEDQGKYECVAENEVGT 195
I N++ ED+G Y + T
Sbjct: 64 VIANALTEDEGDYVFAPDAYNVT 86
Score = 33.8 bits (78), Expect = 0.009
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSG 84
+I + + V + L C S N P K W + LPV S R ++ G
Sbjct: 8 LKILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQES--DRLKVVQKG 58
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 59.0 bits (142), Expect = 5e-11
Identities = 31/212 (14%), Positives = 56/212 (26%), Gaps = 32/212 (15%)
Query: 23 DKIPPGFPQITEAPSTK--VVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNL 80
D P +++ + T V+ C S +S R
Sbjct: 1 DYRSPFIASVSDQHGVVYITENKNKTVVIPCLGS-ISNLNVSLCARY---PEKRFVPDGN 56
Query: 81 LTSGAPGTYIKIKPNLFSPLSVYS----------------ADKIPPGFPQITEAPSTKV- 123
S I + S + + + +PS +
Sbjct: 57 RISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIE 116
Query: 124 VEISHTTVLHCSASGNPPPKISW--------IREMLPVDTSRNPRYNLLTSGAPGALQIT 175
+ + VL+C+A I + + V+ + L I
Sbjct: 117 LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTID 176
Query: 176 NSIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207
DQG Y C A + + T+ + ST + V
Sbjct: 177 GVTRSDQGLYTCAASSGLMTKKN-STFVRVHE 207
Score = 42.5 bits (99), Expect = 3e-05
Identities = 16/107 (14%), Positives = 34/107 (31%), Gaps = 5/107 (4%)
Query: 106 DKIPPGFPQITEAPSTK--VVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNL 163
D P +++ + T V+ C S +S + P N
Sbjct: 1 DYRSPFIASVSDQHGVVYITENKNKTVVIPCLGS-ISNLNVSLCARY--PEKRFVPDGNR 57
Query: 164 LTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQV 210
++ + I + + G C A+ + S ++ V G ++
Sbjct: 58 ISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRI 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 59.9 bits (145), Expect = 5e-11
Identities = 17/90 (18%), Positives = 25/90 (27%), Gaps = 4/90 (4%)
Query: 119 PSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSI 178
S + T + C K+ V + + + +G L
Sbjct: 253 ESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGD---LFFKKVQ 309
Query: 179 EEDQGKYECVAENEVGTEYSPSTMLYVKGT 208
ED G Y C A E + S L V
Sbjct: 310 VEDGGVYTCYAMGETF-NETLSVELKVYNF 338
Score = 32.1 bits (73), Expect = 0.12
Identities = 6/49 (12%), Positives = 13/49 (26%)
Query: 36 PSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSG 84
S + T + C K+ V + + + +G
Sbjct: 253 ESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNG 301
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 56.6 bits (137), Expect = 7e-11
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGAL 172
+ TE + T VL C S P + W + + R++L GA L
Sbjct: 20 IKFTEGLRNEEATEGATAVLRCELSKMAP--VEWWKGHETLRDG--DRHSLRQDGARCEL 75
Query: 173 QITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207
QI + ED G+Y C+ E S ML V+
Sbjct: 76 QIRGLVAEDAGEYLCMCGKERT-----SAMLTVRA 105
Score = 31.9 bits (73), Expect = 0.040
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSG 84
+ TE + T VL C S P + W + + R++L G
Sbjct: 20 IKFTEGLRNEEATEGATAVLRCELSKMAP--VEWWKGHETLRDG--DRHSLRQDG 70
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 56.2 bits (136), Expect = 7e-11
Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 10/103 (9%)
Query: 104 SADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNL 163
S+ F +I + P+ +V + + +P ++ W + + S +Y
Sbjct: 2 SSGSSGAAFAKILD-PAYQVDK-GGRVRFVVELA-DPKLEVKWYKNGQEIRPS--TKYIF 56
Query: 164 LTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
G L I N D +Y A +E ST L+V+
Sbjct: 57 EHKGCQRILFINNCQMTDDSEYYVTAGDEKC-----STELFVR 94
Score = 31.2 bits (71), Expect = 0.066
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 21 SADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNL 80
S+ F +I + P+ +V + + +P ++ W + + S +Y
Sbjct: 2 SSGSSGAAFAKILD-PAYQVDK-GGRVRFVVELA-DPKLEVKWYKNGQEIRPS--TKYIF 56
Query: 81 LTSG 84
G
Sbjct: 57 EHKG 60
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 56.5 bits (136), Expect = 8e-11
Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 8/88 (9%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGA---- 168
P + + + H + S G P P + W+ ++ + L A
Sbjct: 4 PASVQLHTAVEM---HHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 60
Query: 169 -PGALQITNSIEEDQGKYECVAENEVGT 195
G L++ + G Y +A N G
Sbjct: 61 RHGCLRLNQPTHVNNGNYTLLAANPFGQ 88
Score = 32.2 bits (73), Expect = 0.046
Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 3/61 (4%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTY 89
P + + + H + S G P P + W+ ++ + L A T
Sbjct: 4 PASVQLHTAVEM---HHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 60
Query: 90 I 90
Sbjct: 61 R 61
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 56.5 bits (136), Expect = 8e-11
Identities = 12/93 (12%), Positives = 22/93 (23%), Gaps = 10/93 (10%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNP---PPKISWIREMLPVDTSRN-------PRYN 162
E P V++ P I W + S+ +
Sbjct: 8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFE 67
Query: 163 LLTSGAPGALQITNSIEEDQGKYECVAENEVGT 195
+ +QI + + G Y C +
Sbjct: 68 RHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKF 100
Score = 30.0 bits (67), Expect = 0.23
Identities = 7/52 (13%), Positives = 13/52 (25%), Gaps = 3/52 (5%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNP---PPKISWIREMLPVDTSRNPRY 78
E P V++ P I W + S+ ++
Sbjct: 8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKH 59
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 55.4 bits (134), Expect = 1e-10
Identities = 12/83 (14%), Positives = 23/83 (27%), Gaps = 1/83 (1%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGAL 172
+T+ L C S + W + + RY + G L
Sbjct: 8 IMVTKQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHIL 66
Query: 173 QITNSIEEDQGKYECVAENEVGT 195
I + + D +Y + +
Sbjct: 67 IIEGATKADAAEYSVMTTGGQSS 89
Score = 32.3 bits (74), Expect = 0.028
Identities = 8/55 (14%), Positives = 14/55 (25%), Gaps = 1/55 (1%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSG 84
+T+ L C S + W + + RY + G
Sbjct: 8 IMVTKQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEG 61
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 55.4 bits (134), Expect = 1e-10
Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 8/100 (8%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGAL 172
TE + VE T V C +P ++W + +L + S ++ G L
Sbjct: 9 NCFTEELTNLQVEEKGTAVFTCKTE-HPAATVTWRKGLLELRAS--GKHQPSQEGLTLRL 65
Query: 173 QITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
I+ + D Y C L V+G +
Sbjct: 66 TISALEKADSDTYTCDIGQAQS-----RAQLLVQGRRSGP 100
Score = 30.8 bits (70), Expect = 0.089
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSG 84
TE + VE T V C +P ++W + +L + S ++ G
Sbjct: 9 NCFTEELTNLQVEEKGTAVFTCKTE-HPAATVTWRKGLLELRAS--GKHQPSQEG 60
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 55.9 bits (135), Expect = 1e-10
Identities = 15/101 (14%), Positives = 26/101 (25%), Gaps = 8/101 (7%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTS-GAPGA 171
I E V+ + C S + W + P+ + + G
Sbjct: 14 VHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHAN--ELNEIDAQPGGYHV 71
Query: 172 LQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
L + +D G A ++ S L V
Sbjct: 72 LTLRQLALKDSGTIYFEAGDQRA-----SAALRVTEKPSVF 107
Score = 34.7 bits (80), Expect = 0.005
Identities = 7/46 (15%), Positives = 13/46 (28%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRN 75
I E V+ + C S + W + P+ +
Sbjct: 14 VHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANEL 59
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 54.6 bits (132), Expect = 2e-10
Identities = 21/95 (22%), Positives = 31/95 (32%), Gaps = 8/95 (8%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGAL 172
+ EA V L C S P + W + +Y+L GA L
Sbjct: 9 VRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPG--DKYSLRQEGAMLEL 65
Query: 173 QITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207
+ N +D G+Y C ++ S L V
Sbjct: 66 VVRNLRPQDSGRYSCSFGDQTT-----SATLTVTA 95
Score = 32.3 bits (74), Expect = 0.030
Identities = 11/55 (20%), Positives = 16/55 (29%), Gaps = 3/55 (5%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSG 84
+ EA V L C S P + W + +Y+L G
Sbjct: 9 VRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPG--DKYSLRQEG 60
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 55.5 bits (133), Expect = 3e-10
Identities = 21/117 (17%), Positives = 36/117 (30%), Gaps = 29/117 (24%)
Query: 109 PPGF--PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNP------- 159
PP P T VV + L SG+P P + W + + + +
Sbjct: 13 PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPE 72
Query: 160 --------------------RYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTE 196
R + T+ + + +ED+G Y +N VG +
Sbjct: 73 DTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGED 129
Score = 35.9 bits (82), Expect = 0.003
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 2/65 (3%)
Query: 26 PPGF--PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTS 83
PP P T VV + L SG+P P + W + + + +
Sbjct: 13 PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPE 72
Query: 84 GAPGT 88
+
Sbjct: 73 DTGDS 77
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 56.4 bits (136), Expect = 3e-10
Identities = 21/175 (12%), Positives = 42/175 (24%), Gaps = 47/175 (26%)
Query: 49 LHCSASGNPPPKISWIREMLPVDTSR----------NPRYNLLTSGA----------PGT 88
+ + I W + ++ Y L +G
Sbjct: 21 IPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDI 80
Query: 89 YIKIKPNLFSPLSVYSADKIPPGFPQIT----EAPSTKVVEISHTTV-LHCSASGNPPPK 143
Y +S+Y E S + + L C P+
Sbjct: 81 YK---------VSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPE 131
Query: 144 ISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYS 198
++ ++ + S+ + K++C A N+V E S
Sbjct: 132 LNLYQDGKHLKLSQR-------------VITHKWTTSLSAKFKCTAGNKVSKESS 173
Score = 40.3 bits (94), Expect = 1e-04
Identities = 8/61 (13%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 31 QITEAPSTKVVEISHTTV-LHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTY 89
+I E S + + L C P+++ ++ + S+ + T+ +
Sbjct: 101 KIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQRVITHKWTTSLSAKF 160
Query: 90 I 90
Sbjct: 161 K 161
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 54.6 bits (131), Expect = 3e-10
Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 13/108 (12%)
Query: 109 PPGFPQITEAPSTKVVEISHTTVLHCSASGNP---PPKISWIREMLPVDTSRNPR----- 160
P G P V + + +G PP + W + +S+ +
Sbjct: 3 PIGL--FVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLH 60
Query: 161 --YNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
Y+ + L IT++ G Y C + + + L V
Sbjct: 61 DSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFD-CSNFNLTVH 107
Score = 30.4 bits (68), Expect = 0.15
Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 5/56 (8%)
Query: 26 PPGFPQITEAPSTKVVEISHTTVLHCSASGNP---PPKISWIREMLPVDTSRNPRY 78
P G P V + + +G PP + W + +S+ ++
Sbjct: 3 PIGL--FVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQH 56
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 56.0 bits (135), Expect = 4e-10
Identities = 25/185 (13%), Positives = 52/185 (28%), Gaps = 25/185 (13%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPP-KISWIREMLPVDTSRNPRY-NLLTSGAPG 87
+ P V + L C + +P W + + + + + T G
Sbjct: 8 AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASSYFIDAATVDDSG 67
Query: 88 TYI-KIKPNLFSP---LSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPP- 142
Y + + + S L V+ + +AP E L C + N
Sbjct: 68 EYRCQTQLSTLSDPVQLEVHIG-------WLLLQAPRWVFKE-EDPIHLRCHSWKNTALH 119
Query: 143 KISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTM 202
K+++++ + I + +D G Y C S +
Sbjct: 120 KVTYLQNGKGRKYFHHNSD----------FYIPKATLKDSGSYFCRGLVGSKNVSSETVQ 169
Query: 203 LYVKG 207
+ +
Sbjct: 170 ITITQ 174
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 53.8 bits (129), Expect = 8e-10
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR---EMLPVD---TSRNPRYNLLTS 166
+T T VE T L C S + W+ + ++ +N +Y LL
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 167 GAP-GALQITNSIEEDQGKYECVAENE 192
A ++ + N +D+G Y+C+ ++
Sbjct: 62 SANQLSITVPNVTLQDEGVYKCLHYSD 88
Score = 38.4 bits (89), Expect = 3e-04
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR---EMLPVD---TSRNPRYNLLTS 83
+T T VE T L C S + W+ + ++ +N +Y LL
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 84 GAPGTYIKIK 93
A I +
Sbjct: 62 SANQLSITVP 71
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 53.2 bits (127), Expect = 1e-09
Identities = 19/99 (19%), Positives = 30/99 (30%), Gaps = 9/99 (9%)
Query: 117 EAPSTKVVEISHTTVLHCSASGNPPPKISWIRE--------MLPVDTSRNPRYNLLTSGA 168
+ + VL+C+A I + E V+ +
Sbjct: 13 SPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKF 72
Query: 169 PGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207
L I DQG Y C A + + T+ ST + V
Sbjct: 73 LSTLTIDGVTRSDQGLYTCAASSGLMTK-KNSTFVRVHE 110
Score = 31.6 bits (71), Expect = 0.064
Identities = 9/59 (15%), Positives = 16/59 (27%)
Query: 34 EAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTYIKI 92
+ + VL+C+A I + E N G+ +K
Sbjct: 13 SPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKK 71
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 52.8 bits (127), Expect = 1e-09
Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 3/87 (3%)
Query: 109 PPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGA 168
P + + S VL C S +W ++ V+ S + G
Sbjct: 7 GPVHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEES--ELLVVKMDGR 63
Query: 169 PGALQITNSIEEDQGKYECVAENEVGT 195
L + + +D G++EC E
Sbjct: 64 KHRLILPEAKVQDSGEFECRTEGVSAF 90
Score = 27.7 bits (62), Expect = 1.2
Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 3/59 (5%)
Query: 26 PPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSG 84
P + + S VL C S +W ++ V+ S + G
Sbjct: 7 GPVHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEES--ELLVVKMDG 62
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 52.4 bits (125), Expect = 1e-08
Identities = 23/174 (13%), Positives = 45/174 (25%), Gaps = 19/174 (10%)
Query: 36 PSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLT----SGAPGTYI- 90
P VE + L+CS + P + + T R R+ +
Sbjct: 9 PRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQLVDIREPETQPVC 68
Query: 91 -----KIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPP--- 142
+ + + P ++ P + L C G P
Sbjct: 69 FFRCARRTLQARGLIRTFQ----RPDRVELMPLPPW--QPVGENFTLSCRVPGAGPRASL 122
Query: 143 KISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTE 196
++ +R + GA + E+ + C AE ++
Sbjct: 123 TLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLRPH 176
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 53.3 bits (128), Expect = 1e-08
Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 3/102 (2%)
Query: 104 SADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNL 163
+ P+ P V + +C + PP ++W ++ + S +Y
Sbjct: 474 AFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSV--KYMK 531
Query: 164 LTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205
+G L I +D+G+Y A+N G L V
Sbjct: 532 RYNGNDYGLTINRVKGDDKGEYTVRAKNSYG-TKEEIVFLNV 572
Score = 29.0 bits (65), Expect = 1.3
Identities = 8/55 (14%), Positives = 18/55 (32%)
Query: 21 SADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRN 75
+ P+ P V + +C + PP ++W ++ + S
Sbjct: 474 AFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVK 528
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 52.6 bits (125), Expect = 1e-08
Identities = 30/233 (12%), Positives = 61/233 (26%), Gaps = 56/233 (24%)
Query: 28 GFPQITEAPSTKVVEISHTTVLHC---SASGNPPPKISWIREMLPVDTSRNPRYNLLTSG 84
G P +T + V + + ++ C ++ W+ D S +
Sbjct: 4 GLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLS 63
Query: 85 APGTYIKIKPNLFSPLSVYSAD------------------KIPPGFPQ---------ITE 117
P + + +L ++ + E
Sbjct: 64 VPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPE 123
Query: 118 APSTKVVEISHTTVLHCSASGNPPP---KISWIR------------------EMLPVDTS 156
P V + TT + CS K++W+ +
Sbjct: 124 EPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSL 183
Query: 157 RNPRYNLLTSGAP----GALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205
R + +G G++++ E DQG Y C + +L+V
Sbjct: 184 GRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRK-TIVLHV 235
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 53.1 bits (126), Expect = 1e-08
Identities = 30/243 (12%), Positives = 57/243 (23%), Gaps = 40/243 (16%)
Query: 4 GTY---IKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPK 60
G Y L + + I +P+ + + C +
Sbjct: 303 GRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKS 362
Query: 61 ISW---------------IREMLPVDTSRNPRYNLLTSGAPGTYIKIKPNL--------- 96
I + + V R +LL GT+ I L
Sbjct: 363 IKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYW 422
Query: 97 -----FSPLSVYSADKIPPGFPQITEAPSTKVVE---ISHTTVLHCSASGNPPPKISWIR 148
+ KI G P + + V + C S W
Sbjct: 423 CLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNN 482
Query: 149 EMLPVDTSRNPRYN-----LLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTML 203
S++ + + +L + D+G Y C + + + +
Sbjct: 483 TGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYV 542
Query: 204 YVK 206
V+
Sbjct: 543 AVE 545
Score = 51.5 bits (122), Expect = 4e-08
Identities = 21/199 (10%), Positives = 42/199 (21%), Gaps = 36/199 (18%)
Query: 41 VEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAP-------------- 86
E+++ C S + + R L
Sbjct: 243 PEVANVAKFLCRQSSGENCDVVVNTL-GKRAPAFEGRILLNPQDKDGSFSVVITGLRKED 301
Query: 87 -GTY---IKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPP 142
G Y L + + I +P+ + + C +
Sbjct: 302 AGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESK 361
Query: 143 KISW---------------IREMLPVDTSRNPRYNLLTSGAPGA--LQITNSIEEDQGKY 185
I + + V R +LL G + + D G Y
Sbjct: 362 SIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFY 421
Query: 186 ECVAENEVGTEYSPSTMLY 204
C+ + + +
Sbjct: 422 WCLTNGDTLWRTTVEIKII 440
Score = 50.8 bits (120), Expect = 8e-08
Identities = 32/218 (14%), Positives = 59/218 (27%), Gaps = 44/218 (20%)
Query: 36 PSTKVVEISHTTVLHC---SASGNPPPKISWIREML------------PVDTSRNPRYNL 80
P ++ + C S N + W R+ V + R NL
Sbjct: 7 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANL 66
Query: 81 LTSGAPGTYIKIKPNL--------------FSPLSVYSADKIPPGFPQITEAPSTKVVEI 126
GT++ L S + P + V++
Sbjct: 67 TNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDL 126
Query: 127 SHTTVLHCSASGNPPPKISW------IREMLPVDTS------RNPRYNLLTSGAPG---A 171
T ++C K + +L +D+S R L G +
Sbjct: 127 GRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFS 186
Query: 172 LQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQ 209
+ I D G+Y C A ++ + + + +K
Sbjct: 187 VVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEP 224
Score = 50.8 bits (120), Expect = 9e-08
Identities = 31/225 (13%), Positives = 59/225 (26%), Gaps = 39/225 (17%)
Query: 19 VYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISW------IREMLPVDT 72
+ P + V++ T ++C K + +L +D+
Sbjct: 102 SFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDS 161
Query: 73 S------RNPRYNLLTSGAP----------------GTYI-KIKPNLFSPLSVYSADKIP 109
S R L G G Y+ + + S +
Sbjct: 162 SGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLK 221
Query: 110 PGFPQITEAPSTKV-------VEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYN 162
P + E V E+++ C S + + R
Sbjct: 222 PEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTL-GKRAPAFEGRIL 280
Query: 163 LLTSGAPGA--LQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205
L G+ + IT +ED G+Y C A ++ + +
Sbjct: 281 LNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQ 325
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 51.1 bits (122), Expect = 2e-08
Identities = 21/174 (12%), Positives = 43/174 (24%), Gaps = 47/174 (27%)
Query: 49 LHCSASGNPPPKISWIREMLPVDTSR--------NPRYNLLTSGA----------PGTYI 90
+ + ++ W R V + + + +L +G GTY
Sbjct: 18 IPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYN 77
Query: 91 ------KIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKI 144
L L + + + P I S L C ++
Sbjct: 78 VTVYSTNGTRILNKALDLRILEMVSK--PMIYWECSN--------ATLTCEVLEGTDVEL 127
Query: 145 SWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYS 198
+ + + R ++ + ++C A N V E
Sbjct: 128 KLYQGKEHLRSLRQ-------------KTMSYQWTNLRAPFKCKAVNRVSQESE 168
Score = 35.7 bits (82), Expect = 0.004
Identities = 6/60 (10%), Positives = 18/60 (30%), Gaps = 1/60 (1%)
Query: 31 QITEAPSTKVVEISHTTV-LHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTY 89
+I E S ++ + L C ++ + + + R + + +
Sbjct: 96 RILEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAPF 155
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 51.8 bits (123), Expect = 3e-08
Identities = 10/102 (9%), Positives = 32/102 (31%), Gaps = 16/102 (15%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPK----ISWIREMLPVDTSRNPRYNLLTSGA 168
++ + + L + +G+ P +W ++ P
Sbjct: 3 FTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPH------------ENN 50
Query: 169 PGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQV 210
L + ++ E+ G Y+ ++ S + ++ ++
Sbjct: 51 TATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAEL 92
Score = 49.8 bits (118), Expect = 1e-07
Identities = 24/189 (12%), Positives = 53/189 (28%), Gaps = 32/189 (16%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPK----ISWIREMLPV-DTSRNPRYNLLTSG 84
++ + + L + +G+ P +W ++ P + + TS
Sbjct: 3 FTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTATLTVADATSE 62
Query: 85 APGTYIKIKPN----LFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCS---AS 137
G+Y + V+ ++ P V LH + +
Sbjct: 63 NAGSYKVTVQDTDTMTSVESEVFLMEEAEL--IVNITEPQHFYVSSQTDVELHATVKFSG 120
Query: 138 GNPPPKI-----SWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENE 192
G P SW + +DT+++ + I + G Y E
Sbjct: 121 GKTPADNYELHYSWSKGEDVIDTTQD-------------ITIQEFTADKNGVYTVKVWGE 167
Query: 193 VGTEYSPST 201
+ ++
Sbjct: 168 SEDSAASAS 176
Score = 47.1 bits (111), Expect = 9e-07
Identities = 31/192 (16%), Positives = 54/192 (28%), Gaps = 25/192 (13%)
Query: 30 PQITEAPSTKVVEISHTTVLHCS---ASGNPPPKI-----SWIREMLPVDTSRNPRYNLL 81
P V LH + + G P SW + +DT+++
Sbjct: 93 IVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDITIQEF 152
Query: 82 TSGAPGTYIKIKPNLFSPLSVYSA--DKIPPGFPQITEAPSTKVVEISHTTV-------L 132
T+ G Y + ++ + S V + ++ +
Sbjct: 153 TADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDI 212
Query: 133 HCSASGNPPPKISWI----REMLPVDTSRNPRYNLLTSG----APGALQITNSIEEDQGK 184
+SG P I + RE T G G L ++ +D K
Sbjct: 213 VGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAK 272
Query: 185 YECVAENEVGTE 196
+ CVA+ E
Sbjct: 273 FWCVAKLYQQIE 284
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 48.7 bits (116), Expect = 4e-08
Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 7/85 (8%)
Query: 110 PGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDT------SRNPRYNL 163
G V T +L C N + W R+ R L
Sbjct: 4 KGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIEL 63
Query: 164 LTSGAPG-ALQITNSIEEDQGKYEC 187
+ + ++ +++ D+G+Y C
Sbjct: 64 VRASWHELSISVSDVSLSDEGQYTC 88
Score = 35.6 bits (82), Expect = 0.002
Identities = 11/73 (15%), Positives = 17/73 (23%), Gaps = 6/73 (8%)
Query: 27 PGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDT------SRNPRYNL 80
G V T +L C N + W R+ R L
Sbjct: 4 KGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIEL 63
Query: 81 LTSGAPGTYIKIK 93
+ + I +
Sbjct: 64 VRASWHELSISVS 76
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 51.0 bits (121), Expect = 4e-08
Identities = 25/179 (13%), Positives = 55/179 (30%), Gaps = 24/179 (13%)
Query: 31 QITEAPSTKVVEISHTTVLHCSASGNPPPKISW----IREMLPVDTSRNPRYNLLTSGAP 86
Q + +PS ++ + ++ CS S + P + ++ L + + Y L
Sbjct: 1 QTSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQED 60
Query: 87 GTYI------KIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNP 140
+ + + L+VY P ++ PS + L C G
Sbjct: 61 SQPMCYSNCPDGQSTAKTFLTVYW----TPERVELAPLPSW--QPVGKNLTLRCQVEGGA 114
Query: 141 PP---KISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTE 196
P + +R + R + A + + + C E ++ +
Sbjct: 115 PRANLTVVLLRGEKELK-----REPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQ 168
Score = 44.5 bits (104), Expect = 8e-06
Identities = 31/221 (14%), Positives = 56/221 (25%), Gaps = 39/221 (17%)
Query: 1 TCIGTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPP- 59
C + + L+VY P ++ PS + L C G P
Sbjct: 64 MCYSNCPDGQSTAKTFLTVYW----TPERVELAPLPSW--QPVGKNLTLRCQVEGGAPRA 117
Query: 60 --KISWIREMLPVDTSRNPRYNL----------------------LTSGAPGTYIKIKPN 95
+ +R + L G + +
Sbjct: 118 NLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTS 177
Query: 96 LFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDT 155
L + P P +P V+E+ + CS G P + + L +
Sbjct: 178 APYQLQTFV----LPATPPQLVSPR--VLEVDTQGTVVCSLDGLFPVSEAQVH--LALGD 229
Query: 156 SRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTE 196
R + + A + ED+G +G +
Sbjct: 230 QRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQ 270
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 47.1 bits (111), Expect = 4e-07
Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 11/100 (11%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDT------SRNPRYNLLTS 166
S + V T VL C + + W R+ R L+TS
Sbjct: 39 DDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTS 98
Query: 167 GAPG-ALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205
++ I+N D+G+Y C + T + V
Sbjct: 99 TPHELSISISNVALADEGEYTCS----IFTMPVRTAKSLV 134
Score = 31.3 bits (70), Expect = 0.099
Identities = 14/71 (19%), Positives = 19/71 (26%), Gaps = 6/71 (8%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDT------SRNPRYNLLTS 83
S + V T VL C + + W R+ R L+TS
Sbjct: 39 DDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTS 98
Query: 84 GAPGTYIKIKP 94
I I
Sbjct: 99 TPHELSISISN 109
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 47.4 bits (112), Expect = 5e-07
Identities = 26/179 (14%), Positives = 56/179 (31%), Gaps = 24/179 (13%)
Query: 31 QITEAPSTKVVEISHTTVLHCSASGNPPPKISW----IREMLPVDTSRNPRYNLLTSGAP 86
Q + +PS ++ + ++ CS S + P + ++ L + + Y L
Sbjct: 1 QTSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQED 60
Query: 87 GTYI------KIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNP 140
+ + + L+VY P ++ PS + V L C G
Sbjct: 61 SQPMCYSNCPDGQSTAKTFLTVYW----TPERVELAPLPSWQPVG--KQLTLRCQVEGGA 114
Query: 141 PP---KISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTE 196
P + +R R + A + + ++ C E ++ +
Sbjct: 115 PRAQLTVVLLR-----GEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQ 168
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 43.6 bits (102), Expect = 3e-06
Identities = 21/96 (21%), Positives = 30/96 (31%), Gaps = 9/96 (9%)
Query: 113 PQITEAPSTKVVEISHTTV-LHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGA 171
IT+ P V IS TTV L C P +I W + + +
Sbjct: 8 GGITQTPYK--VSISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDH--- 60
Query: 172 LQITNSIE-EDQGKYECVAENEVGTEYSPSTMLYVK 206
L + E E G Y C + + L +
Sbjct: 61 LSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRAR 96
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 44.9 bits (106), Expect = 3e-06
Identities = 10/86 (11%), Positives = 25/86 (29%), Gaps = 14/86 (16%)
Query: 114 QITEAPSTKVVEISHTTV-LHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGAL 172
++ E S ++ + L C ++ + + + R
Sbjct: 101 EVYEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ-------------K 147
Query: 173 QITNSIEEDQGKYECVAENEVGTEYS 198
++ + ++C A N V E
Sbjct: 148 TMSYQWTNLRAPFKCKAVNRVSQESE 173
Score = 31.4 bits (71), Expect = 0.12
Identities = 5/61 (8%), Positives = 18/61 (29%), Gaps = 1/61 (1%)
Query: 31 QITEAPSTKVVEISHTTV-LHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTY 89
++ E S ++ + L C ++ + + + R + + +
Sbjct: 101 EVYEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAPF 160
Query: 90 I 90
Sbjct: 161 K 161
Score = 29.1 bits (65), Expect = 0.82
Identities = 10/61 (16%), Positives = 20/61 (32%)
Query: 138 GNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEY 197
+ + + + GAL+I N +ED+G Y +E ++
Sbjct: 37 TTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHETEDQW 96
Query: 198 S 198
Sbjct: 97 K 97
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 44.8 bits (105), Expect = 5e-06
Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 13/98 (13%)
Query: 109 PPGFPQITEAPST-KVVEISHTTVLHCSAS-GNPPPKISWIREMLPVD-----------T 155
P +++ T V+E S + C++ GNP PKI+W R ++ T
Sbjct: 115 KPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMT 174
Query: 156 SRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEV 193
SR R L + ++ + C A +
Sbjct: 175 SRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSL 212
Score = 35.9 bits (82), Expect = 0.005
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 7/71 (9%)
Query: 26 PPGFPQITEAPST-KVVEISHTTVLHCSAS-GNPPPKISWIREMLPVDTSRNPR-----Y 78
P +++ T V+E S + C++ GNP PKI+W R ++
Sbjct: 115 KPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMT 174
Query: 79 NLLTSGAPGTY 89
+ A G
Sbjct: 175 SRTVREASGLL 185
Score = 35.9 bits (82), Expect = 0.005
Identities = 15/107 (14%), Positives = 25/107 (23%), Gaps = 19/107 (17%)
Query: 118 APSTKVVEISHTTVLHCSASGNPPPK-ISWIREMLP------------------VDTSRN 158
P V + +L C+ +G + W
Sbjct: 6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTR 65
Query: 159 PRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205
R + G L + + D+ Y CV + L V
Sbjct: 66 GRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNV 112
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 43.1 bits (101), Expect = 2e-05
Identities = 12/81 (14%), Positives = 23/81 (28%), Gaps = 5/81 (6%)
Query: 119 PSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSI 178
V ++ L C A G P ++ W V + + N +T+++
Sbjct: 123 RILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREE--KLFNVTSTL 180
Query: 179 ---EEDQGKYECVAENEVGTE 196
+ C E
Sbjct: 181 RINTTTNEIFYCTFRRLDPEE 201
Score = 34.6 bits (79), Expect = 0.014
Identities = 21/115 (18%), Positives = 29/115 (25%), Gaps = 23/115 (20%)
Query: 119 PSTKVVEISHTTVLHCSASGNPPP-----KISWIREMLPVDTSRN-------------PR 160
VVE + C + W E + + R
Sbjct: 8 KDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQR 67
Query: 161 YNLLTSGAP---GALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
LL ALQIT+ +D G Y C+ G + V I
Sbjct: 68 ARLLKDQLSLGNAALQITDVKLQDAGVYRCMISY--GGADYKRITVKVNAPYNKI 120
Score = 33.4 bits (76), Expect = 0.036
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 36 PSTKVVEISHTTVLHCSASGNPPPKISWIRE 66
V ++ L C A G P ++ W
Sbjct: 123 RILVVDPVTSEHELTCQAEGYPKAEVIWTSS 153
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 41.8 bits (98), Expect = 3e-05
Identities = 10/86 (11%), Positives = 24/86 (27%), Gaps = 14/86 (16%)
Query: 114 QITEAPSTKVVEISHTTV-LHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGAL 172
+ E S ++ + L C ++ + + + R
Sbjct: 91 YVLEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ-------------K 137
Query: 173 QITNSIEEDQGKYECVAENEVGTEYS 198
++ + ++C A N V E
Sbjct: 138 TMSYQWTNLRAPFKCKAVNRVSQESE 163
Score = 28.4 bits (63), Expect = 1.2
Identities = 5/61 (8%), Positives = 17/61 (27%), Gaps = 1/61 (1%)
Query: 31 QITEAPSTKVVEISHTTV-LHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGTY 89
+ E S ++ + L C ++ + + + R + + +
Sbjct: 91 YVLEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAPF 150
Query: 90 I 90
Sbjct: 151 K 151
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 42.9 bits (100), Expect = 3e-05
Identities = 11/87 (12%), Positives = 19/87 (21%), Gaps = 6/87 (6%)
Query: 108 IPPGFPQITEAPSTKVVEISHTTVLHCSAS-GNPPPKISWIREMLPVDTSRNPRYNLLTS 166
P P A + L C + W+ + + +
Sbjct: 2 APRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRR 61
Query: 167 GAPGALQITNSIEEDQGKYECVAENEV 193
L + + D G Y C
Sbjct: 62 -----LLLRSVQLHDSGNYSCYRAGRP 83
Score = 31.0 bits (69), Expect = 0.26
Identities = 6/57 (10%), Positives = 12/57 (21%), Gaps = 1/57 (1%)
Query: 25 IPPGFPQITEAPSTKVVEISHTTVLHCSAS-GNPPPKISWIREMLPVDTSRNPRYNL 80
P P A + L C + W+ + + +
Sbjct: 2 APRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGM 58
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 41.3 bits (96), Expect = 7e-05
Identities = 26/173 (15%), Positives = 55/173 (31%), Gaps = 18/173 (10%)
Query: 36 PSTKVVEISHTTVLHCSASGNPPPKISW---IREMLPVDTSRNPRYNLLTSGAPGTYI-- 90
P VE + ++CS + N P + ++L + ++ Y +
Sbjct: 9 PKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLNKILLDEQAQWKHYLVSNISHDTVLQCH 68
Query: 91 ----KIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPP---K 143
+ ++ S +SVY PP +T P+ V + + + C P
Sbjct: 69 FTCSGKQESMNSNVSVYQ----PPRQVILTLQPTL--VAVGKSFTIECRVPTVEPLDSLT 122
Query: 144 ISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTE 196
+ R + + A T E+ + C+A ++ +
Sbjct: 123 LFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSR 175
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 41.4 bits (96), Expect = 8e-05
Identities = 16/94 (17%), Positives = 25/94 (26%), Gaps = 9/94 (9%)
Query: 109 PPGFPQITEAPSTKVVEISH-TTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSG 167
P I + + + L S PP SW L R + LT
Sbjct: 123 LIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSSELT-- 180
Query: 168 APGALQITNSIEEDQGKYECVAENEVGTEYSPST 201
+T E+ C + + + T
Sbjct: 181 ------LTPRPEDHGTNLTCQMKRQGAQVTTERT 208
Score = 29.8 bits (66), Expect = 0.49
Identities = 12/58 (20%), Positives = 16/58 (27%), Gaps = 1/58 (1%)
Query: 26 PPGFPQITEAPSTKVVEISH-TTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLT 82
P I + + + L S PP SW L R + LT
Sbjct: 123 LIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSSELT 180
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 41.0 bits (95), Expect = 8e-05
Identities = 16/97 (16%), Positives = 27/97 (27%), Gaps = 10/97 (10%)
Query: 111 GFPQITEAPSTKV-VEISHTTVLHCSASG-NPPPKISWIREMLPVDTSRNPRYNLLTSGA 168
P E P V V + + L C + + + W + +
Sbjct: 5 VKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRG-------LDTSLGAVQSDTG 57
Query: 169 PGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205
L + N+ G CV G + + L V
Sbjct: 58 RSVLTVRNASLSAAGTRVCVGSCG-GRTFQHTVQLLV 93
Score = 34.5 bits (78), Expect = 0.015
Identities = 21/161 (13%), Positives = 40/161 (24%), Gaps = 11/161 (6%)
Query: 28 GFPQITEAPSTKV-VEISHTTVLHCSASG-NPPPKISWIREMLPVDTSRNP------RYN 79
P E P V V + + L C + + + W + ++
Sbjct: 5 VKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVR 64
Query: 80 LLTSGAPGTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGN 139
+ A GT + + + FP +V + C+A
Sbjct: 65 NASLSAAGTRVCVGSCGGRTFQHTVQLLVYA-FPNQLTVSPAALVPGDPE--VACTAHKV 121
Query: 140 PPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEE 180
P + + L V L + E+
Sbjct: 122 TPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDED 162
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 40.6 bits (94), Expect = 1e-04
Identities = 25/185 (13%), Positives = 49/185 (26%), Gaps = 46/185 (24%)
Query: 41 VEISHTTV-LHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAP---GTYI------ 90
V IS T+V L C + + W + + + L G Y+
Sbjct: 10 VSISGTSVELTCPLDSDEN--LKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPAS 67
Query: 91 ----------------KIKPNLFSPLSVYSADKIPPGFPQITEAPSTK--VVEISHTTVL 132
K + D G + + +L
Sbjct: 68 NKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLL 127
Query: 133 HCSASGNPPPKISWIRE--MLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAE 190
C + I W+++ ++ + +NL N+ ++ +G Y+C
Sbjct: 128 TCGLTDKT---IKWLKDGSIISPLNATKNTWNL-----------GNNAKDPRGTYQCQGA 173
Query: 191 NEVGT 195
E
Sbjct: 174 KETSN 178
Score = 33.3 bits (75), Expect = 0.031
Identities = 19/84 (22%), Positives = 26/84 (30%), Gaps = 18/84 (21%)
Query: 124 VEISHTTV-LHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQ 182
V IS T+V L C + + W + + + L S ED
Sbjct: 10 VSISGTSVELTCPLDSDEN--LKWEKNGQELPQKHDKHLVLQDF----------SEVEDS 57
Query: 183 GKYECVAENEVGTEYSPSTMLYVK 206
G Y C Y LY+K
Sbjct: 58 GYYVCYTPASNKNTY-----LYLK 76
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 38.6 bits (89), Expect = 2e-04
Identities = 17/107 (15%), Positives = 34/107 (31%), Gaps = 11/107 (10%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNP---PPKISWIREMLPVDTSR-------NPRYN 162
+ P + VE V+ +G P I W + S+ +N
Sbjct: 13 GVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHN 72
Query: 163 LLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQ 209
++ L I + D+G Y + + + S + V+ +
Sbjct: 73 SASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCD-SCGFNIDVEAPR 118
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 38.4 bits (89), Expect = 3e-04
Identities = 17/123 (13%), Positives = 34/123 (27%), Gaps = 25/123 (20%)
Query: 110 PGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNL------ 163
P P++ P E+ L C G+ SW+ + P + +
Sbjct: 2 PQAPELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQ-NSSSKLPQPTFVVYMASSH 60
Query: 164 ------------------LTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205
+ L + +E++G Y C + +S +
Sbjct: 61 NKITWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQ 120
Query: 206 KGT 208
K +
Sbjct: 121 KVS 123
Score = 31.4 bits (71), Expect = 0.084
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 27 PGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR 65
P P++ P E+ L C G+ SW+
Sbjct: 2 PQAPELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLF 40
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 5e-04
Identities = 22/149 (14%), Positives = 43/149 (28%), Gaps = 26/149 (17%)
Query: 18 SVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNP-------PPKISWIREMLPV 70
+ S D T ++ L C P P ++S I E +
Sbjct: 287 THISLDHHSMTL---TPDEVKSLLL----KYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 71 DTSRNPRYNLLTSGAPGTYIK-----IKPN----LFSPLSVYSAD-KIPPGFPQI--TEA 118
+ + + T I+ ++P +F LSV+ IP + +
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 119 PSTKVVEISHTTVLHCSASGNPPPKISWI 147
+ V+ + + + P I
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Score = 32.5 bits (73), Expect = 0.12
Identities = 38/267 (14%), Positives = 72/267 (26%), Gaps = 104/267 (38%)
Query: 11 PNLFSPLSVYSADKIPPGFPQITEA-----PSTKVVEISHTTVLH--------------C 51
+F+ +V ++ +A P+ V+ + C
Sbjct: 123 NQVFAKYNVSRLQPYL----KLRQALLELRPAKNVL-------IDGVLGSGKTWVALDVC 171
Query: 52 SASG---NPPPKISWIR-----------EML-------------PVDTSRNPRYNL-LTS 83
+ KI W+ EML D S N + +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 84 GAPGTYIKIKPNLFSPL---SVYSADKIPPGF------------PQITE---APSTKVVE 125
+K KP L +V +A K F Q+T+ A +T +
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNA-KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 126 ISHTT--------------VLHCSASGNP-------PPKISWIREMLPVDTSRNPRYNLL 164
+ H + L C P P ++S I E + + + +
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 165 TSGAPGALQITNSIE-----EDQGKYE 186
+ I +S+ E + ++
Sbjct: 351 NCDKLTTI-IESSLNVLEPAEYRKMFD 376
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 37.6 bits (87), Expect = 5e-04
Identities = 19/90 (21%), Positives = 28/90 (31%), Gaps = 20/90 (22%)
Query: 123 VVEISHTTVLHCSASGNPPPK---ISWIREMLP---------------VDTSRNPRYNLL 164
VE+ L CS + + W + P V ++ RY L
Sbjct: 5 KVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLK 64
Query: 165 TSGAPG--ALQITNSIEEDQGKYECVAENE 192
G +L I N +D G Y C +
Sbjct: 65 GDLNKGDVSLIIKNVTLDDHGTYCCRIQFP 94
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 38.0 bits (88), Expect = 8e-04
Identities = 14/93 (15%), Positives = 24/93 (25%), Gaps = 16/93 (17%)
Query: 109 PPGFPQITEAPSTKVVEISHTTVLHCSA-SGNPPPKISWIREMLPVDTSRNPRYNLLTSG 167
Q+T ++ L CS + W + + N
Sbjct: 107 QLRNIQVTNHSQL-FQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQPN--------- 156
Query: 168 APGALQITNSI-EEDQGKYECVAENEVGTEYSP 199
L ++ + Y C+AEN V
Sbjct: 157 ----LTVSWDPRISSEQDYTCIAENAVSNLSFS 185
Score = 29.2 bits (65), Expect = 0.65
Identities = 16/105 (15%), Positives = 31/105 (29%), Gaps = 14/105 (13%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPK-ISWIRE------------MLPVDTSRNPRY 161
++ P + + L I+W+ P NP+
Sbjct: 1 MSLTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQ 60
Query: 162 NLLTSGAP-GALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205
+ +LQ++N ED G Y + + S T+ +
Sbjct: 61 GKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRIL 105
Score = 27.3 bits (60), Expect = 3.4
Identities = 8/67 (11%), Positives = 15/67 (22%), Gaps = 3/67 (4%)
Query: 26 PPGFPQITEAPSTKVVEISHTTVLHCSA-SGNPPPKISWIREMLPVDTSRNPR-YNLLTS 83
Q+T ++ L CS + W + + N
Sbjct: 107 QLRNIQVTNHSQL-FQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPRI 165
Query: 84 GAPGTYI 90
+ Y
Sbjct: 166 SSEQDYT 172
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 37.8 bits (87), Expect = 0.001
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 2/86 (2%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASG-NPPPKISWIREMLPVDTSRNPRYNLL-TSGAPG 170
PQ T + + C ++G PP +I+W ++ + + L T
Sbjct: 117 PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTS 176
Query: 171 ALQITNSIEEDQGKYECVAENEVGTE 196
+ S + D + C E+E +
Sbjct: 177 LWILVPSSQVDGKQVTCKVEHESFEK 202
Score = 34.3 bits (78), Expect = 0.015
Identities = 17/112 (15%), Positives = 33/112 (29%), Gaps = 21/112 (18%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPP-----KISWIREMLP-----------VDTSRN 158
+ +AP+ + + L C +++W R S +
Sbjct: 2 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 61
Query: 159 PRYNLLTSGA-----PGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205
R + + +L++ ED+G Y C+ S L V
Sbjct: 62 KRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRV 113
Score = 30.8 bits (69), Expect = 0.21
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 6/61 (9%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASG-NPPPKISWIREMLPVDTSRNPRYNLLTSGAPGT 88
PQ T + + C ++G PP +I+W D P+ + + GT
Sbjct: 117 PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHS-----DLGGMPQTSQVPGFLSGT 171
Query: 89 Y 89
Sbjct: 172 V 172
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 36.8 bits (85), Expect = 0.001
Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 12/103 (11%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPP--KISWIREMLPVDT-------SRNPRY-NL 163
E E + +L C S +++W ++ + +P + +
Sbjct: 5 GTIETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDR 64
Query: 164 LTSGAPGALQITNSIEEDQGKYEC-VAENEVGTEYSPSTMLYV 205
+ G L + + D G+Y C GT Y+ L V
Sbjct: 65 VAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGT-YTGRIFLEV 106
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 35.6 bits (82), Expect = 0.002
Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 21/86 (24%)
Query: 123 VVEIS----HTTVLHCSASGNPPPK-----ISWIREMLPV----------DTSRNPRYNL 163
+++I T L C + + + W + V S + +Y
Sbjct: 1 MLKIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMG 60
Query: 164 LTSGAPG--ALQITNSIEEDQGKYEC 187
TS L++ N +D+G Y+C
Sbjct: 61 RTSFDSDSWTLRLHNLQIKDKGLYQC 86
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 37.1 bits (84), Expect = 0.003
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 128 HTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYEC 187
T L CS N ++ W + + + +P+Y L+ L I N E D G Y+C
Sbjct: 549 GTAELKCSQKSNLA-RVFWKFQNGVLK-AESPKYGLMGRKN---LLIFNLSEGDSGVYQC 603
Query: 188 VAENE 192
++E
Sbjct: 604 LSEER 608
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 34.9 bits (80), Expect = 0.005
Identities = 23/93 (24%), Positives = 32/93 (34%), Gaps = 18/93 (19%)
Query: 117 EAPSTKVVEISHTTVLHCSASGNPPP-KISWIREMLP---------------VDTSRNPR 160
++ + H L C+ S W R P V ++ R
Sbjct: 2 DSYVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSR 61
Query: 161 YNLLTSGAPG--ALQITNSIEEDQGKYECVAEN 191
YNL + G +L I NS+E D G Y C E
Sbjct: 62 YNLKGHISEGDVSLTIENSVESDSGLYCCRVEI 94
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 79
Score = 32.6 bits (74), Expect = 0.013
Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 17/83 (20%)
Query: 122 KVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGALQITNSIEED 181
+ E+ ++C+ S I+W+ + S R +L I +
Sbjct: 4 PIEELEDRVFVNCNTS------ITWVEGTVGTLLSDITRLDL-----------GKRILDP 46
Query: 182 QGKYECVAENEVGTEYSPSTMLY 204
+G Y C + + S + Y
Sbjct: 47 RGIYRCNGTDIYKDKESTVQVHY 69
Score = 28.4 bits (63), Expect = 0.53
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 12/71 (16%)
Query: 39 KVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPRYNL--LTSGAPGTY----IKI 92
+ E+ ++C+ S I+W+ + S R +L G Y I
Sbjct: 4 PIEELEDRVFVNCNTS------ITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNGTDI 57
Query: 93 KPNLFSPLSVY 103
+ S + V+
Sbjct: 58 YKDKESTVQVH 68
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 32.2 bits (73), Expect = 0.039
Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 19/83 (22%)
Query: 128 HTTVLHCSASGNPPP--KISWIREMLP---------------VDTSRNPRYNLLTSGAPG 170
L C + W + P + + ++ +Y LL G
Sbjct: 12 QPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQFG 71
Query: 171 --ALQITNSIEEDQGKYECVAEN 191
+L I+N+ D G Y C E
Sbjct: 72 EVSLTISNTNRGDSGVYCCRIEV 94
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.039
Identities = 33/215 (15%), Positives = 60/215 (27%), Gaps = 105/215 (48%)
Query: 40 VVEISHTTVLHCSASGNPPPKI--------SWIREMLPVDTSRNPRYNLLTSGAPGTYIK 91
+++ S T+ + K+ W+ P +T P + L S
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN--PSNT---PDKDYLLS-------- 233
Query: 92 IKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKI------- 144
P+S P I V++++H V G P ++
Sbjct: 234 ------IPIS----------CPLIG------VIQLAHYVVT-AKLLGFTPGELRSYLKGA 270
Query: 145 -----------------SW------IREMLPV---------DTSRNPRYNLLTSGAPGAL 172
SW +R+ + V + P +L P L
Sbjct: 271 TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY--PNTSL----PPSIL 324
Query: 173 QITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207
+ +S+E ++G PS ML +
Sbjct: 325 E--DSLENNEG--------------VPSPMLSISN 343
Score = 28.1 bits (62), Expect = 2.6
Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 24/95 (25%)
Query: 112 FPQITEAPST--KVVEISHTT---VLHCSASGNPPPKI-SWIREM---LPVDTS-----R 157
+P + PS +E + +L S S ++ ++ + LP
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPSPML--SISNLTQEQVQDYVNKTNSHLPAGKQVEISLV 371
Query: 158 NPRYNLLTSGAPGALQ--------ITNSIEEDQGK 184
N NL+ SG P +L DQ +
Sbjct: 372 NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR 406
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 33.8 bits (76), Expect = 0.039
Identities = 15/97 (15%), Positives = 26/97 (26%), Gaps = 6/97 (6%)
Query: 94 PNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPV 153
++ ++ K P + + L C + SW +
Sbjct: 482 RSVLQSINPAEPHKECPNPKPDKAPLQKVSLAPNSRYYLSCPME-SRHATYSWRHKENVE 540
Query: 154 DTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAE 190
S P + L I N + G Y C A+
Sbjct: 541 -QSCEPGHQSPN----CILFIENLTAQQYGHYFCEAQ 572
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 33.1 bits (75), Expect = 0.041
Identities = 17/113 (15%), Positives = 30/113 (26%), Gaps = 21/113 (18%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPK---ISWIREMLP---------------VDT 155
+ + + L C + + W+ L
Sbjct: 6 SVLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSA 65
Query: 156 SRNPRYNLLTSGAPG---ALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205
R ++L G AL+I N D GKY C ++ E + +
Sbjct: 66 PYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVA 118
Score = 33.1 bits (75), Expect = 0.044
Identities = 10/97 (10%), Positives = 25/97 (25%), Gaps = 7/97 (7%)
Query: 110 PGFPQITEAPSTKVVEISHTTVLHCSASGN-PPPKISWIREMLPVDTSRNPRYNLLTSGA 168
++ L C ++G P P+I W + + +
Sbjct: 116 KVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNN---KGENIPTVEAPVVADG 172
Query: 169 PGALQITNSI---EEDQGKYECVAENEVGTEYSPSTM 202
G + S+ C + + +++
Sbjct: 173 VGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASI 209
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 32.5 bits (74), Expect = 0.057
Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 15/112 (13%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISW------------IREMLPVDTSRNPRY 161
Q+ ++P + V T +L+CS + W I + + R+
Sbjct: 2 QVRQSPQSLTVWEGETAILNCSYEDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRF 61
Query: 162 NLLTSGAPG--ALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVD 211
+ + +L I +S D Y C A + + T L VK +
Sbjct: 62 TIFFNKREKKFSLHIADSQPGDSATYFCAASDNRIF-FGDGTQLVVKPNIQN 112
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Length = 121
Score = 31.1 bits (71), Expect = 0.080
Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 23/114 (20%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASG--NPPPKISWIR--------EMLPVD----TSRNP 159
++ + P E + ++C W R E + + N
Sbjct: 2 RVDQTPQRITKETGESLTINCVVRDSRCVLSTGYWYRKPPGSRNEESISDGGRYVETVNR 61
Query: 160 RYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV---KGTQV 210
+ L+I + +D G Y C E+ G+ + L GT V
Sbjct: 62 GSKSFS------LRINDLTVKDSGTYRCKPESRYGSYDAVCAALNDQYGGGTVV 109
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 31.1 bits (70), Expect = 0.086
Identities = 22/93 (23%), Positives = 31/93 (33%), Gaps = 19/93 (20%)
Query: 117 EAPSTKVVEISHTTVLHCSASGNPPP--KISWIREMLP---------------VDTSRNP 159
E+ + H L C S + + W V RN
Sbjct: 2 ESHTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNS 61
Query: 160 RYNLLTSGAPG--ALQITNSIEEDQGKYECVAE 190
RY L + + G +L I N++ D G Y CV E
Sbjct: 62 RYQLKGNISEGNVSLTIENTVVGDGGPYCCVVE 94
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 31.1 bits (70), Expect = 0.10
Identities = 15/112 (13%), Positives = 24/112 (21%), Gaps = 16/112 (14%)
Query: 104 SADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR--------EMLPVDT 155
S+ ++ V V S W E
Sbjct: 2 SSGSSGT--ARLVAGLEDVQVYDGEDAVFSLDLSTIIQGT--WFLNGEELKSNEPEGQVE 57
Query: 156 SRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207
RY + G L + +D G + V S L ++
Sbjct: 58 PGALRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPGVQD----SAALTIQE 105
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 32.0 bits (72), Expect = 0.13
Identities = 17/107 (15%), Positives = 34/107 (31%), Gaps = 7/107 (6%)
Query: 93 KPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPP----KISWIR 148
+ + F + AD P G PS + I + + C P +++W R
Sbjct: 94 QGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSR 153
Query: 149 ---EMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENE 192
+ + T + + T L + + Y+C +
Sbjct: 154 ASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHP 200
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 30.7 bits (69), Expect = 0.13
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Query: 155 TSRNPRYN--LLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205
++ + GAL I+ +ED Y + G E L V
Sbjct: 56 KYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQV 108
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 31.9 bits (72), Expect = 0.14
Identities = 22/190 (11%), Positives = 39/190 (20%), Gaps = 26/190 (13%)
Query: 36 PSTKVVEISHTTVLHCSAS-------GNPPPKISWIREMLPVDTSRNPRYNL-------- 80
P + VV++ C I W + + N
Sbjct: 10 PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFT 69
Query: 81 -LTSGAPGTYIKIKPNLFSPLSVYSAD---KIPPGFPQITEAPSTKVVEISHTTVLHCSA 136
+ S I +VY +PP P+ + C
Sbjct: 70 DIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVN------EGKKMRCEW 123
Query: 137 SGNPPPKISW-IREMLPVDTSRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGT 195
G + T + +++ + AEN +G
Sbjct: 124 DGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGK 183
Query: 196 EYSPSTMLYV 205
S
Sbjct: 184 VTSDHINFDP 193
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 31.6 bits (71), Expect = 0.15
Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 23/93 (24%)
Query: 118 APSTKVVEISHTTVLHCSASGNPPP-----KISWIREMLPVDTSRNPRYNLLT----SGA 168
A T++ ++ + C+ + P I+W + + +
Sbjct: 9 AGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWK-SLTFDKEVKVFEFFGDHQEAFR 67
Query: 169 PGA-------------LQITNSIEEDQGKYECV 188
PGA L++ E+ G+Y C
Sbjct: 68 PGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCE 100
Score = 27.0 bits (59), Expect = 4.8
Identities = 23/207 (11%), Positives = 55/207 (26%), Gaps = 54/207 (26%)
Query: 35 APSTKVVEISHTTVLHCSASGNPPP-----KISWIREMLPVDTSRNPRYNLLTSGAPGTY 89
A T++ ++ + C+ + P I+W + +
Sbjct: 9 AGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWK-SLTFDKEVKVFEFFG----DHQ 63
Query: 90 IKIKPNLFSPLSVYSADK---------------------IPPGF------PQITEAPS-- 120
+P + + P ++ +P+
Sbjct: 64 EAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASR 123
Query: 121 ---TKVVEISHTTVLHCSASGNPPP--KISWIREMLPVDTSRNPRYNLLTSGAPGA---- 171
+V + C +SG P I+W ++ +++T
Sbjct: 124 LLLDQVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGT 183
Query: 172 ------LQITNSIEEDQGKYECVAENE 192
L++ +S E+ Y+CV +
Sbjct: 184 FNVTSCLKLNSSQEDPGTVYQCVVRHA 210
>2c9a_A Receptor-type tyrosine-protein phosphatase MU; glycoprotein,
hydrolase, immunoglobulin domain; HET: NAG MAN NDG FUL;
2.7A {Homo sapiens} SCOP: b.1.1.4 b.29.1.25
Length = 259
Score = 31.4 bits (70), Expect = 0.16
Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 2/95 (2%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASG-NPPPKISWIREMLPVDTSRNPRYNLLTSGAPGA 171
P + +V T CSA G W++ + D + +
Sbjct: 166 PHFLRIQNVEVNAGQFAT-FQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIAS 224
Query: 172 LQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
+ N+ + D GKY C+ E G S L VK
Sbjct: 225 FNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK 259
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 31.1 bits (70), Expect = 0.17
Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 13/97 (13%)
Query: 123 VVEISHTTVLHCSASGNP----PPKISWIREMLPV------DTSRNPRY---NLLTSGAP 169
E+ L C + + +I W +E V D + P Y +
Sbjct: 5 TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN 64
Query: 170 GALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
++ I D+G YECV + + V
Sbjct: 65 LSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVT 101
Score = 29.2 bits (65), Expect = 0.80
Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 21/97 (21%)
Query: 109 PPGFPQITEAPSTKVVEISHTTVLHCSASG-NPPPKISWIR---EMLPVDTSRNPR---- 160
P I++ + S+ + CS SG P P +SW+ E+ ++T+ +
Sbjct: 107 DFPTPSISD----FEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETE 162
Query: 161 -YNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTE 196
Y + + L + + C+ +
Sbjct: 163 LYAVSSK-----LDFNMT---TNHSFMCLIKYGHLRV 191
Score = 26.5 bits (58), Expect = 5.3
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 26 PPGFPQITEAPSTKVVEISHTTVLHCSASG-NPPPKISWIRE 66
P I++ + S+ + CS SG P P +SW+
Sbjct: 107 DFPTPSISD----FEIPTSNIRRIICSTSGGFPEPHLSWLEN 144
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 30.7 bits (69), Expect = 0.17
Identities = 18/105 (17%), Positives = 26/105 (24%), Gaps = 21/105 (20%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPK---ISWIREMLP-----------VDTSRNP 159
++ + L C S + W R D + P
Sbjct: 8 RVIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAP 67
Query: 160 RYNLLTSGAPG-------ALQITNSIEEDQGKYECVAENEVGTEY 197
Y T AL+I N D+G Y C + E
Sbjct: 68 EYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEE 112
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 30.2 bits (68), Expect = 0.18
Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 7/62 (11%)
Query: 153 VDTSRNPRYNLLTSGAPGA--LQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQV 210
VD R L+ + L + + ED G Y E + VKGT V
Sbjct: 60 VDKRFRGRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEISDSNRWL-----DVKGTTV 114
Query: 211 DI 212
+
Sbjct: 115 TV 116
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 30.8 bits (69), Expect = 0.20
Identities = 18/125 (14%), Positives = 32/125 (25%), Gaps = 25/125 (20%)
Query: 110 PGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIREMLPVDTSRNPR---YNLLTS 166
P P++ P E+ L C G+ SW+ + P Y +
Sbjct: 7 PQAPELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQ-NSSSKLPQPTFVVYMASSH 65
Query: 167 GAPGA---------------------LQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205
L + +E++G Y C + +S +
Sbjct: 66 NKITWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQ 125
Query: 206 KGTQV 210
K
Sbjct: 126 KVNST 130
Score = 28.1 bits (62), Expect = 1.5
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 27 PGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR 65
P P++ P E+ L C G+ SW+
Sbjct: 7 PQAPELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLF 45
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 30.3 bits (68), Expect = 0.20
Identities = 15/116 (12%), Positives = 28/116 (24%), Gaps = 25/116 (21%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPK----ISWIR------------------EMLP 152
+ + LHCS + +W +
Sbjct: 2 VVYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYID 61
Query: 153 VDTSRNPRYNLLTSGAPG--ALQITNSIEEDQGKYECVAENEVGTEY-SPSTMLYV 205
+ R + + ++ I N D G + C +N + LYV
Sbjct: 62 EVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYV 117
>3o81_A Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like)
domain, histocompatibi antigen, MHC class I molecule
from B21 chicken, immune SYST; 2.00A {Gallus gallus}
Length = 119
Score = 29.3 bits (66), Expect = 0.41
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 24 KIPPGFPQITEAPSTKV-----VEISHTTVLHCSASGNPPPKI--SWIR 65
G Q P +V VL+C A+G PPKI + ++
Sbjct: 13 VALLGLAQADLTPKVQVYSRFPASAGTKNVLNCFAAGFHPPKISITLMK 61
Score = 29.3 bits (66), Expect = 0.41
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 107 KIPPGFPQITEAPSTKV-----VEISHTTVLHCSASGNPPPKI--SWIR 148
G Q P +V VL+C A+G PPKI + ++
Sbjct: 13 VALLGLAQADLTPKVQVYSRFPASAGTKNVLNCFAAGFHPPKISITLMK 61
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 29.4 bits (65), Expect = 0.41
Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 35/126 (27%)
Query: 117 EAPSTKVVEISHTTV-LHCSASGNP---PPKISWIREMLPVDTSRNPRYNL--------- 163
T+V + TV L CS PP ISW++ P +++ + N
Sbjct: 8 RTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGF 67
Query: 164 ------------------LTSGAPGALQITNSIEEDQGKYEC-VAENEVGTEYS---PST 201
+ + A L++T+ +D G+Y C VA+ + TE+ S
Sbjct: 68 VESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSV 127
Query: 202 MLYVKG 207
+L V G
Sbjct: 128 VLKVTG 133
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist
peptide T-cell vaccines, transmembrane, immunoglobulin
domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D
2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D
3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 30.0 bits (67), Expect = 0.43
Identities = 21/113 (18%), Positives = 36/113 (31%), Gaps = 17/113 (15%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISW------------IREMLPVDTSRNPRY 161
++T+ P+ V VL+CS + + + W + + R
Sbjct: 2 EVTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRL 61
Query: 162 --NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
+L S L I S D Y C G Y + +GT + +
Sbjct: 62 NASLDKSSGRSTLYIAASQPGDSATYLCAVRPTSGGSY---IPTFGRGTSLIV 111
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 28.9 bits (65), Expect = 0.51
Identities = 21/112 (18%), Positives = 33/112 (29%), Gaps = 18/112 (16%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPK--ISWIR-------EMLPVDTSRNPRYNLL 164
++ + P + E + ++C W R E S+ RY
Sbjct: 2 RVDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEES---ISKGGRYVET 58
Query: 165 TSGAPGA--LQITNSIEEDQGKYECVAENEVG---TEYSPSTMLYV-KGTQV 210
+ + L+I + ED G Y C G S GT V
Sbjct: 59 VNSGSKSFSLRINDLTVEDGGTYRCGLGVAGGYCDYALCSSRYAECGDGTAV 110
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV,
allergen, antimicrobial, bacteriolytic enzyme,
glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo
sapiens} PDB: 2znw_A*
Length = 242
Score = 29.8 bits (67), Expect = 0.59
Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 16/109 (14%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGN----------PPPKISWIREMLPVDTSRNP---- 159
+T++P+T V ++ L C AS + + + ++ +
Sbjct: 3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRL--LIKYASQSISGIPS 60
Query: 160 RYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGT 208
R++ SG L I + ED G Y C N + T L + G
Sbjct: 61 RFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSXPYTFGGGTKLEITGG 109
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 28.7 bits (64), Expect = 0.68
Identities = 18/109 (16%), Positives = 26/109 (23%), Gaps = 27/109 (24%)
Query: 117 EAPSTKV-VEISHTTVLHC----SASGNPPPKISWIREMLP---------------VDTS 156
P + T L C S P I W+ +
Sbjct: 9 TTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDD 68
Query: 157 RNPRYN---LLTSGAPG----ALQITNSIEEDQGKYECVAENEVGTEYS 198
P TS ++ +TN D G Y+C + G
Sbjct: 69 YYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANK 117
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 29.4 bits (66), Expect = 0.69
Identities = 15/91 (16%), Positives = 26/91 (28%), Gaps = 19/91 (20%)
Query: 116 TEAPSTKVVEISHTTVLHCSASGNPPPKISWIR-------EMLPVDTSRNPRYNLLTSGA 168
+ + + + + C + I W + L S L + +
Sbjct: 6 EGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGIS 65
Query: 169 PGA------------LQITNSIEEDQGKYEC 187
PG + + N IE D G Y C
Sbjct: 66 PGKYDTYGSTRKNLRMILRNLIENDSGVYYC 96
Score = 29.0 bits (65), Expect = 0.90
Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 20/143 (13%)
Query: 86 PGTYIKIKPNLFSPLSVYSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGN-PPPKI 144
GT + + S G ++T+A S+ + + L+C + I
Sbjct: 110 SGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYI 169
Query: 145 SWIRE--------MLPVDTSRNP----RY--NLLTSGAPGALQITNSIEEDQGKYECVAE 190
W + ++ + RY N + AL I+ ED KY C
Sbjct: 170 FWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCA-- 227
Query: 191 NEVGTEYSPSTMLYV-KGTQVDI 212
+G + + L KGT+V +
Sbjct: 228 --LGESLTRADKLIFGKGTRVTV 248
>1bii_B Beta-2 microglobulin, MHC class I H-2DD; complex (MHC I/peptide),
major histocompatibility complex class I DD,
transmembrane, glycoprotein; 2.40A {Mus musculus} SCOP:
b.1.1.2
Length = 119
Score = 28.2 bits (63), Expect = 0.92
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 7/46 (15%)
Query: 27 PGFPQITEAPSTKV-----VEISHTTVLHCSASGNPPPKI--SWIR 65
G I + P +V E +L+C + PP I ++
Sbjct: 16 TGLYAIQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLK 61
Score = 28.2 bits (63), Expect = 0.92
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 7/46 (15%)
Query: 110 PGFPQITEAPSTKV-----VEISHTTVLHCSASGNPPPKI--SWIR 148
G I + P +V E +L+C + PP I ++
Sbjct: 16 TGLYAIQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLK 61
>1iak_A MHC class II I-AK; histocompatibility antigen, peptide complex,
histocompa antigen I-AK; HET: NAG; 1.90A {Mus musculus}
SCOP: b.1.1.2 d.19.1.1 PDB: 1d9k_C* 1k2d_A* 1jl4_A
2pxy_C 1u3h_C 2z31_C 1muj_A* 1lnu_A* 3c5z_C 3c60_C
3c6l_C 3rdt_C 2iad_A 1iao_A 1es0_A 3cup_A* 3mbe_A*
1f3j_A*
Length = 199
Score = 29.0 bits (65), Expect = 0.94
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 7/43 (16%)
Query: 30 PQITEAPSTKV-----VEISHTTVLHCSASG-NPPP-KISWIR 65
P EAP V V + L C PP I+W+R
Sbjct: 85 PATNEAPQATVFPKSPVLLGQPNTLICFVDNIFPPVINITWLR 127
Score = 29.0 bits (65), Expect = 0.94
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 7/43 (16%)
Query: 113 PQITEAPSTKV-----VEISHTTVLHCSASG-NPPP-KISWIR 148
P EAP V V + L C PP I+W+R
Sbjct: 85 PATNEAPQATVFPKSPVLLGQPNTLICFVDNIFPPVINITWLR 127
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 27.9 bits (62), Expect = 1.0
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 170 GALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205
GAL I+N +ED+G Y TE L V
Sbjct: 73 GALHISNVRKEDKGTYYMRVLR--ETENELKITLEV 106
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 28.7 bits (64), Expect = 1.1
Identities = 13/113 (11%), Positives = 32/113 (28%), Gaps = 17/113 (15%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR-----------EMLPVDTSRNP---- 159
+ + P ++V L C + P +SW + +
Sbjct: 4 LEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPG 63
Query: 160 RYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
L T L++ + C + + T + +G+++ +
Sbjct: 64 ADYLATRVTDTELRLQVANMSQGRTLYCTSSADHWTNTGQLY--FGEGSKLTV 114
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 29.1 bits (65), Expect = 1.1
Identities = 22/110 (20%), Positives = 36/110 (32%), Gaps = 18/110 (16%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPK-ISWIRE-------MLPVDTSRNPRYNLL- 164
Q+ + + V + +LHC+ + P I W R + PR +
Sbjct: 5 QVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVS 64
Query: 165 ----TSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQV 210
++ I+N D G Y CV + SP T + G
Sbjct: 65 ESTKRENMDFSISISNITPADAGTYYCV----KFRKGSPDTE-FKSGAGT 109
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 29.1 bits (65), Expect = 1.1
Identities = 20/144 (13%), Positives = 41/144 (28%), Gaps = 22/144 (15%)
Query: 35 APSTKVVEISHTTVLHCSASGNPPP---KISWIREML--PVDTSRNPRYNLLTS------ 83
P+ + + + L C+ +G +W V S
Sbjct: 253 RPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLP 312
Query: 84 --------GAPGTYIKIKPNLFSPLSVYSADKIPPGFPQI-TEAPSTKVVEISHTTVLHC 134
G T P +PL+ + P++ P ++ + ++ L C
Sbjct: 313 GCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTC 372
Query: 135 SASGNPPP--KISWIREMLPVDTS 156
A G P + W++ +
Sbjct: 373 LARGFSPKDVLVRWLQGSQELPRE 396
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 28.0 bits (62), Expect = 1.1
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 152 PVDTSRNPRYNLLTSGAPGA--LQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205
P + R+ + G + +T+ EED G Y C S S Y+
Sbjct: 64 PRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRIYRPSDNSVSKSVRFYL 119
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus,
PP65, T cell receptor (TCR), immune response, public
response; 2.80A {Homo sapiens}
Length = 199
Score = 28.4 bits (63), Expect = 1.3
Identities = 21/107 (19%), Positives = 31/107 (28%), Gaps = 14/107 (13%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISW------------IREMLPVDTSRNPRY 161
+ ++P + V+ +T CS + + W L D + R
Sbjct: 2 NVEQSPQSLHVQEGDSTNFTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRI 61
Query: 162 --NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
L T L I S ED Y C + T L V
Sbjct: 62 SATLNTKEGYSYLYIKGSQPEDSATYLCARNTGNQFYFGTGTSLTVI 108
>3gbl_A BETA2-microglobulin; immune response, immunoglobulin domain, MHC
I, secreted, immune system; 2.10A {Ctenopharyngodon
idella}
Length = 97
Score = 27.3 bits (61), Expect = 1.4
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 7/40 (17%)
Query: 33 TEAPSTKV-----VEISHTTVLHCSASG-NPPP-KISWIR 65
+P +V E L C SG +PP I ++
Sbjct: 2 VSSPKIQVYSHYPGEYGKENTLICYVSGFHPPDISIELLK 41
Score = 27.3 bits (61), Expect = 1.4
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 7/40 (17%)
Query: 116 TEAPSTKV-----VEISHTTVLHCSASG-NPPP-KISWIR 148
+P +V E L C SG +PP I ++
Sbjct: 2 VSSPKIQVYSHYPGEYGKENTLICYVSGFHPPDISIELLK 41
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA,
IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB:
3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Length = 257
Score = 28.4 bits (64), Expect = 1.5
Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 13/107 (12%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPK-ISWIREM---LPV-----DTSRNP----R 160
+T++P+ L CSAS + + W ++ P ++ R
Sbjct: 143 VLTQSPAIMSASPGEKVTLTCSASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPAR 202
Query: 161 YNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKG 207
++ SG +L I++ ED Y C + + T L +K
Sbjct: 203 FSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEIKR 249
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 28.5 bits (63), Expect = 1.5
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 14/95 (14%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISW------------IREMLPVDTSRNPRY 161
Q+ ++P + ++ L C+ + +P + W +T N RY
Sbjct: 5 QVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRY 64
Query: 162 --NLLTSGAPGALQITNSIEEDQGKYECVAENEVG 194
L +L IT S D Y CV +
Sbjct: 65 TATLDADTKQSSLHITASQLSDSASYICVVSDRGS 99
>3c5j_A HLA class II histocompatibility antigen, DR alpha; HLA, MHC class
II, glycoprotein, immune response, membrane,
transmembrane, GTP-binding, methylation; HET: NAG; 1.80A
{Homo sapiens} PDB: 1d5x_A* 1d5z_A* 1d6e_A* 1d5m_A
1fyt_A* 1hqr_A 1j8h_A* 1r5i_A 1seb_A 1zgl_A 2seb_A*
1fv1_A* 2ipk_A* 3pdo_A 3pgc_A 3pgd_A 1ymm_A* 1aqd_A
2g9h_A* 1h15_A ...
Length = 181
Score = 28.1 bits (63), Expect = 1.6
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 37 STKVVEISHTTVLHCSASGNPPPKI--SWIR 65
+ VE+ VL C PP + +W+R
Sbjct: 93 TNSPVELREPNVLICFIDKFTPPVVNVTWLR 123
Score = 28.1 bits (63), Expect = 1.6
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 120 STKVVEISHTTVLHCSASGNPPPKI--SWIR 148
+ VE+ VL C PP + +W+R
Sbjct: 93 TNSPVELREPNVLICFIDKFTPPVVNVTWLR 123
>1lk2_B Beta-2-microglobulin; class I MHC-peptide complex, high
resolution, anisotropic AN refinement, immune system;
HET: NAG FUC; 1.35A {Mus musculus} SCOP: b.1.1.2 PDB:
1bqh_B 1cd1_B 1fo0_L* 1fzj_B* 1fzm_B* 1fzo_B* 1g6r_L
1fzk_B* 1g7q_B* 1hoc_B 1inq_B 1juf_B 1k8d_B 1kbg_L*
1kj2_L* 1kj3_L 1kpu_B* 1kpv_B* 1ld9_B 1ldp_L* ...
Length = 99
Score = 27.3 bits (61), Expect = 1.6
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 7/41 (17%)
Query: 32 ITEAPSTKV-----VEISHTTVLHCSASGNPPP--KISWIR 65
I + P +V E +L+C + PP +I ++
Sbjct: 1 IQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLK 41
Score = 27.3 bits (61), Expect = 1.6
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 7/41 (17%)
Query: 115 ITEAPSTKV-----VEISHTTVLHCSASGNPPP--KISWIR 148
I + P +V E +L+C + PP +I ++
Sbjct: 1 IQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLK 41
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 28.3 bits (63), Expect = 1.7
Identities = 10/78 (12%), Positives = 18/78 (23%), Gaps = 4/78 (5%)
Query: 119 PSTKVVEISHTTVLHCSASGNPPP---KISWIREMLPVDTSRNP-RYNLLTSGAPGALQI 174
P+ + + + L C+ +G +W P R L
Sbjct: 11 PALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPG 70
Query: 175 TNSIEEDQGKYECVAENE 192
+ C A
Sbjct: 71 CAEPWNHGKTFTCTAAYP 88
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 27.6 bits (61), Expect = 1.8
Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 20/96 (20%)
Query: 111 GFPQITEAPSTKVVEISHTTVLHCS---ASGNPPPKISWIRE-------MLPVDTSR--- 157
G P + P + + C G + W+ + D++
Sbjct: 1 GHP-TLKTPESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHI 59
Query: 158 -NPRYN---LLTSGAPG--ALQITNSIEEDQGKYEC 187
+Y ++ PG +LQI +D+ Y C
Sbjct: 60 QQAKYRGRLKVSHKVPGDVSLQINTLQMDDRNHYTC 95
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 27.5 bits (61), Expect = 1.9
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 6/36 (16%)
Query: 156 SRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAEN 191
+ LL +++ N ED G Y+CV
Sbjct: 73 EDYHDHGLLR------VRMVNLQVEDSGLYQCVIYQ 102
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 1.9
Identities = 6/19 (31%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 8 KIKPNLFSPLSVYSADKIP 26
+K L + L +Y+ D P
Sbjct: 21 ALK-KLQASLKLYADDSAP 38
Score = 27.6 bits (60), Expect = 1.9
Identities = 6/19 (31%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 91 KIKPNLFSPLSVYSADKIP 109
+K L + L +Y+ D P
Sbjct: 21 ALK-KLQASLKLYADDSAP 38
>1k5n_B Beta-2-microglobulin, light chain; MHC(major histocompatibility
complex), HLA(human leukocyte A immune system; 1.09A
{Homo sapiens} SCOP: b.1.1.2 PDB: 1a9b_B 1b0g_B 1b0r_B
1bd2_B 1cg9_B 1a9e_B 1duy_B 1eey_B 1eez_B 1efx_B
1gzp_B* 1gzq_B* 1hhg_B 1hhh_B 1hhi_B 1hhj_B 1hhk_B
1i1f_B 1i1y_B 1duz_B* ...
Length = 100
Score = 26.9 bits (60), Expect = 2.0
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 7/41 (17%)
Query: 32 ITEAPSTKV-----VEISHTTVLHCSASGNPPPKI--SWIR 65
I P +V E + L+C SG P I ++
Sbjct: 2 IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLK 42
Score = 26.9 bits (60), Expect = 2.0
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 7/41 (17%)
Query: 115 ITEAPSTKV-----VEISHTTVLHCSASGNPPPKI--SWIR 148
I P +V E + L+C SG P I ++
Sbjct: 2 IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLK 42
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 27.1 bits (59), Expect = 2.1
Identities = 18/93 (19%), Positives = 26/93 (27%), Gaps = 4/93 (4%)
Query: 120 STKVVEISHTTVLHCSAS-GNPPPKISWIREMLPVDTSRNPRYNLLT---SGAPGALQIT 175
S + L C P ++W + R + + L
Sbjct: 19 SEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFE 78
Query: 176 NSIEEDQGKYECVAENEVGTEYSPSTMLYVKGT 208
+ D G Y C A + S ST LYV
Sbjct: 79 PVLPNDNGSYRCSANFQSNLIESHSTTLYVTDV 111
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 28.0 bits (62), Expect = 2.2
Identities = 12/86 (13%), Positives = 24/86 (27%), Gaps = 7/86 (8%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPP----KISWIR---EMLPVDTSRNPRYNLLTS 166
I + V+ T + C + SW E+ T + + T
Sbjct: 19 FIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTL 78
Query: 167 GAPGALQITNSIEEDQGKYECVAENE 192
+ L I + ++C +
Sbjct: 79 RSVSELPIVERDWLNGKTFKCKVNSG 104
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A
{Orectolobus maculatus} PDB: 2ywy_A
Length = 111
Score = 26.9 bits (60), Expect = 2.3
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 172 LQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV--KGTQV 210
L+I++ ED G Y+C A+ PS V GT +
Sbjct: 68 LRISDLRVEDSGTYKCQADYSPSCYSYPSLESAVEGAGTVL 108
>3lqz_A HLA class II histocompatibility antigen, DP alpha; MHC, immune,
disulfide bond, glycoprotein, immune respo membrane, MHC
II, transmembrane, immune system; HET: NAG NDG; 3.25A
{Homo sapiens}
Length = 181
Score = 27.4 bits (61), Expect = 2.3
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 7/43 (16%)
Query: 30 PQITEAPSTKV-----VEISHTTVLHCSASG-NPPP-KISWIR 65
+ P V VE+ L C PP ++W+
Sbjct: 81 QATNDPPEVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLC 123
Score = 27.4 bits (61), Expect = 2.3
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 7/43 (16%)
Query: 113 PQITEAPSTKV-----VEISHTTVLHCSASG-NPPP-KISWIR 148
+ P V VE+ L C PP ++W+
Sbjct: 81 QATNDPPEVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLC 123
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 27.7 bits (61), Expect = 2.6
Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 14/107 (13%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISW------------IREMLPVDTSRNPRY 161
Q+ ++P + VV VL C+ S P + W + D + N RY
Sbjct: 3 QVEQSPQSLVVRQGENCVLQCNYSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGRY 62
Query: 162 --NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
L L IT ++ +D Y CV + + T L V
Sbjct: 63 SATLDKDAKHSTLHITATLLDDTATYFCVVGDRGSALFGSGTQLIVI 109
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 27.5 bits (61), Expect = 2.7
Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 17/114 (14%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR-------EML---PVDTSRNP---- 159
I + P+T V + L C+ G P + W R ++L +
Sbjct: 3 TIHQWPATLVQPVGSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQ 62
Query: 160 RYNLLTSGA-PGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
+ L + D G Y C VG + +G+ + +
Sbjct: 63 NLSASRPQDRQFILSSKKLLLSDSGFYLCAWSVSVGAGVPTIY--FGEGSWLTV 114
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY
high affinity, antibody binding, electrostatics,
directed evolution; HET: FLU; 1.50A {Homo sapiens}
Length = 268
Score = 27.7 bits (62), Expect = 2.9
Identities = 25/122 (20%), Positives = 39/122 (31%), Gaps = 17/122 (13%)
Query: 103 YSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASG-----NPPPKISWIR-------EM 150
Y D +T+ P + V + + C +S N + W ++
Sbjct: 6 YKDDDDKASDVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKV 65
Query: 151 LPVDTSRNP-----RYNLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205
L S R++ SG L+I ED G Y C V + T L +
Sbjct: 66 LIYKVSNRVSGVPDRFSGSGSGTDFTLKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEI 125
Query: 206 KG 207
K
Sbjct: 126 KS 127
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 26.8 bits (58), Expect = 3.1
Identities = 15/93 (16%), Positives = 22/93 (23%), Gaps = 7/93 (7%)
Query: 120 STKVVEISHTTVLHCSAS-GNPPPKISWIREMLPVDTSRNPRYNLLTSGAPGA------L 172
S + C P ++W + + L TS L
Sbjct: 22 SKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVL 81
Query: 173 QITNSIEEDQGKYECVAENEVGTEYSPSTMLYV 205
D G Y C S S ++V
Sbjct: 82 HFKPIHLSDNGSYSCSTNFNSQVINSHSVTIHV 114
>1uvq_B HLA class II histocompatibility antigen; immunology, MHC class II,
diabetes, narcolepsy, autoimmune disease, structural
proteomics in europe, spine, structural genomics; HET:
NAG FUC BMA; 1.8A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1
PDB: 3pl6_B* 1jk8_B* 2nna_B 1s9v_B 2iad_B 1muj_B*
1d9k_D* 1iak_B* 1jl4_B 1f3j_B* 2pxy_D 1k2d_B* 1u3h_D
2z31_D 3mbe_B* 1aqd_B 3pdo_B 3pgc_B 3pgd_B 1klu_B ...
Length = 198
Score = 27.4 bits (61), Expect = 3.1
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 20 YSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKI--SWIR 65
+ P +T +PS + ++H +L CS + P +I W R
Sbjct: 85 FRGILQRRVEPTVTISPS-RTEALNHHNLLVCSVTDFYPGQIKVRWFR 131
Score = 27.4 bits (61), Expect = 3.1
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 103 YSADKIPPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKI--SWIR 148
+ P +T +PS + ++H +L CS + P +I W R
Sbjct: 85 FRGILQRRVEPTVTISPS-RTEALNHHNLLVCSVTDFYPGQIKVRWFR 131
>1fne_B Protein (MHC class II I-EK, beta chain); histocompatibility
antigen, immune system; HET: NAG; 1.90A {Mus musculus}
SCOP: b.1.1.2 d.19.1.1 PDB: 1iea_B* 1i3r_B* 1fng_B*
1ktd_B* 1ieb_B* 1kt2_B* 3o6f_B 3t0e_B
Length = 224
Score = 27.0 bits (60), Expect = 3.8
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 37 STKVVEISHTTVLHCSASGNPPPKI--SWIR 65
TK + H +L CS S P I W R
Sbjct: 129 PTKTQPLEHHNLLVCSVSDFYPGNIEVRWFR 159
Score = 27.0 bits (60), Expect = 3.8
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 120 STKVVEISHTTVLHCSASGNPPPKI--SWIR 148
TK + H +L CS S P I W R
Sbjct: 129 PTKTQPLEHHNLLVCSVSDFYPGNIEVRWFR 159
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 27.3 bits (59), Expect = 3.9
Identities = 16/92 (17%), Positives = 22/92 (23%), Gaps = 14/92 (15%)
Query: 115 ITEAPSTKVVEISHTTVLHCSASGNPPPK---ISWIREMLPVDTSRNPRYNLLTSGAP-- 169
+ A + L C S P + W P S+ S
Sbjct: 296 LMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHH 355
Query: 170 --------GALQITNSIEEDQG-KYECVAENE 192
G LQ E G +Y C +
Sbjct: 356 SDGSVSLSGHLQPPPVTTEQHGARYACRIHHP 387
Score = 26.9 bits (58), Expect = 6.5
Identities = 10/65 (15%), Positives = 15/65 (23%), Gaps = 7/65 (10%)
Query: 32 ITEAPSTKVVEISHTTVLHCSASGNPPPK---ISWIREMLPVDTSRNPRYNLLTSGAP-- 86
+ A + L C S P + W P S+ S
Sbjct: 296 LMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHH 355
Query: 87 --GTY 89
G+
Sbjct: 356 SDGSV 360
>3jts_B Beta-2-microglobulin; alpha helix, beta sheet, beta barrel,
immune response, MHC I membrane, transmembrane, disease
mutation; 2.80A {Homo sapiens}
Length = 119
Score = 26.2 bits (58), Expect = 4.2
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 7/45 (15%)
Query: 28 GFPQITEAPSTKV-----VEISHTTVLHCSASGNPPPKI--SWIR 65
G I P +V E + L+C SG P I ++
Sbjct: 17 GLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLK 61
Score = 26.2 bits (58), Expect = 4.2
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 7/45 (15%)
Query: 111 GFPQITEAPSTKV-----VEISHTTVLHCSASGNPPPKI--SWIR 148
G I P +V E + L+C SG P I ++
Sbjct: 17 GLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLK 61
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 26.3 bits (58), Expect = 4.4
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 6/36 (16%)
Query: 156 SRNPRYNLLTSGAPGALQITNSIEEDQGKYECVAEN 191
+ LL +++ N ED G Y+CV
Sbjct: 68 EDYHDHGLLR------VRMVNLQVEDSGLYQCVIYQ 97
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 25.9 bits (57), Expect = 5.3
Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 21/92 (22%)
Query: 117 EAPSTKVVEISHTTVLHCSASGNPPPK-----ISWIREMLP-------------VDTSRN 158
+AP+ + + L C ++W R S+
Sbjct: 5 QAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKR 64
Query: 159 PRYNLLTSGA---PGALQITNSIEEDQGKYEC 187
+ GA +L++ ED+G Y C
Sbjct: 65 LEFVAARLGAELRNASLRMFGLRVEDEGNYTC 96
>4d8p_B Peptide from gamma-gliadin, linker, MHC class II; class II MHC,
immune system; 3.05A {Triticum aestivum}
Length = 250
Score = 26.7 bits (59), Expect = 5.4
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 30 PQITEAPSTKVVEISHTTVLHCSASGNPPPKI--SWIR 65
P +T +PS + ++H +L CS + P +I W R
Sbjct: 130 PTVTISPS-RTEALNHHNLLVCSVTDFYPAQIKVRWFR 166
Score = 26.7 bits (59), Expect = 5.4
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 113 PQITEAPSTKVVEISHTTVLHCSASGNPPPKI--SWIR 148
P +T +PS + ++H +L CS + P +I W R
Sbjct: 130 PTVTISPS-RTEALNHHNLLVCSVTDFYPAQIKVRWFR 166
>3p73_B Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like)
domain, histocompatibi antigen, immune system; HET:
16A; 1.32A {Gallus gallus} PDB: 3p77_B* 3bev_B 3bew_B
3jvg_C* 2yez_B 2yf5_B 2yf6_B 2yf1_B*
Length = 99
Score = 25.7 bits (57), Expect = 5.5
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 37 STKVVEISHTTVLHCSASGNPPPKI--SWIR 65
S VL+C A+G PPKI + ++
Sbjct: 11 SRFPASAGTKNVLNCFAAGFHPPKISITLMK 41
Score = 25.7 bits (57), Expect = 5.5
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 120 STKVVEISHTTVLHCSASGNPPPKI--SWIR 148
S VL+C A+G PPKI + ++
Sbjct: 11 SRFPASAGTKNVLNCFAAGFHPPKISITLMK 41
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 26.4 bits (58), Expect = 5.9
Identities = 13/82 (15%), Positives = 23/82 (28%), Gaps = 8/82 (9%)
Query: 119 PSTKVVEISHTTV-LHCSASGNPPP----KISWIR---EMLPVDTSRNPRYNLLTSGAPG 170
P K + T + C K +W E+ T T
Sbjct: 9 PKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVS 68
Query: 171 ALQITNSIEEDQGKYECVAENE 192
L + + + +Y+C N+
Sbjct: 69 VLTVLHQDWLNGKEYKCKVSNK 90
>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus
musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A
1d9k_A*
Length = 110
Score = 25.7 bits (57), Expect = 6.4
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 19/113 (16%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISW------------IREMLPVDTSRNPRY 161
Q+ ++P + V T +L+CS + W I + D + R+
Sbjct: 1 QVRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRF 60
Query: 162 NLLTSGAPG--ALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVKGTQVDI 212
+ + +L I +S D Y C A GT + GT++ +
Sbjct: 61 TIFFNKREKKLSLHIADSQPGDSATYFCAASANSGTYQR-----FGTGTKLQV 108
>3lqz_B HLA-DP2 beta chain linked with DRA peptide; MHC, immune, disulfide
bond, glycoprotein, immune respo membrane, MHC II,
transmembrane, immune system; HET: NAG NDG; 3.25A {Homo
sapiens}
Length = 212
Score = 26.3 bits (58), Expect = 6.6
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 2/31 (6%)
Query: 37 STKVVEISHTTVLHCSASGNPPPKI--SWIR 65
+K + H +L C + P I W
Sbjct: 124 PSKKGPLQHHNLLVCHVTDFYPGSIQVRWFL 154
Score = 26.3 bits (58), Expect = 6.6
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 2/31 (6%)
Query: 120 STKVVEISHTTVLHCSASGNPPPKI--SWIR 148
+K + H +L C + P I W
Sbjct: 124 PSKKGPLQHHNLLVCHVTDFYPGSIQVRWFL 154
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 25.7 bits (56), Expect = 7.7
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 172 LQITNSIEEDQGKYEC-VAENEVGTEYSPSTMLYVKG 207
L I + D Y C V +G T L V+
Sbjct: 83 LHIRDVRGHDASIYVCRVEVLGLGVGTGNGTRLVVEK 119
>3c5j_B MHC class II antigen; HLA, MHC class II, glycoprotein, immune
response, membrane, transmembrane, GTP-binding,
methylation; HET: NAG; 1.80A {Homo sapiens} PDB: 2q6w_B
1a6a_B* 1d5m_B* 1j8h_B* 1d5z_B* 1d5x_B* 1d6e_B* 2seb_B*
2wbj_B* 1ymm_B* 3l6f_B* 3s4s_B 3s5l_B 1fyt_B* 1seb_B
1bx2_B* 1zgl_B 1fv1_B 1h15_B* 1hqr_B ...
Length = 190
Score = 26.2 bits (58), Expect = 7.9
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 37 STKVVEISHTTVLHCSASGNPPPKI--SWIR 65
K + H +L CS SG P I W R
Sbjct: 103 PAKTQPLQHHNLLVCSVSGFYPGSIEVRWFR 133
Score = 26.2 bits (58), Expect = 7.9
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 120 STKVVEISHTTVLHCSASGNPPPKI--SWIR 148
K + H +L CS SG P I W R
Sbjct: 103 PAKTQPLQHHNLLVCSVSGFYPGSIEVRWFR 133
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody,
virus/viral protein/antibiotic complex; 2.30A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.1
Length = 247
Score = 26.1 bits (58), Expect = 8.4
Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 12/105 (11%)
Query: 114 QITEAPSTKVVEISHTTVLHCSASGNPPPKISWIR-------EMLPVDTSRNP-----RY 161
+T++P+T + L C AS + ++W + L D S R+
Sbjct: 137 TLTQSPATLSLSPGERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRF 196
Query: 162 NLLTSGAPGALQITNSIEEDQGKYECVAENEVGTEYSPSTMLYVK 206
+ SG L I+ ED Y C + + T + VK
Sbjct: 197 SGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK 241
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 25.7 bits (56), Expect = 8.9
Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 16/96 (16%)
Query: 111 GFPQITEAPSTKVVEISHTTVLHCS-ASGNPPPKISWIREMLP------------VDTSR 157
G PQIT P+T + + C SG W R + +
Sbjct: 2 GIPQIT-GPTTVNGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVK 60
Query: 158 NPRYNLLTSGAPGA--LQITNSIEEDQGKYECVAEN 191
R ++ + + + + ++ D Y C E
Sbjct: 61 RDRVSIKDNQKNRTFTVTMEDLMKTDADTYWCGIEK 96
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH
domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Length = 630
Score = 26.3 bits (59), Expect = 9.3
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 6/28 (21%)
Query: 8 KIKPNLFSPLSV------YSADKIPPGF 29
K P+ F PL V +A +IP +
Sbjct: 50 KPSPSQFMPLVVDYRQKAAAAGRIPTNY 77
Score = 26.3 bits (59), Expect = 9.3
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 6/28 (21%)
Query: 91 KIKPNLFSPLSV------YSADKIPPGF 112
K P+ F PL V +A +IP +
Sbjct: 50 KPSPSQFMPLVVDYRQKAAAAGRIPTNY 77
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END
product-specific receptor; RAGE, AGER, scavenger
receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A
2l7u_A* 2e5e_A
Length = 581
Score = 26.1 bits (57), Expect = 9.7
Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 14/100 (14%)
Query: 26 PPGFPQITEAPSTKVVEISHTTVLHCSASGNPPPKISWIRE---MLPVD--------TSR 74
PG P+I ++ S + + S P +SW + ++P + T R
Sbjct: 470 IPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRR 529
Query: 75 NPRYNLLTSGAPGTYIKIKPNLFSPLSVYSADKIPPGFPQ 114
+P L T + P + PG P+
Sbjct: 530 HPETGLFTLQSELMVT---PARGGDPRPTFSCSFSPGLPR 566
>1iao_B MHC class II I-AD; MHC II, class II MHC, ovalbumin peptide; HET:
NAG; 2.60A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Length = 222
Score = 25.9 bits (57), Expect = 9.7
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 37 STKVVEISHTTVLHCSASGNPPPKI--SWIR 65
++ ++H L CS + P KI W R
Sbjct: 129 LSRTEALNHHNTLVCSVTDFYPAKIKVRWFR 159
Score = 25.9 bits (57), Expect = 9.7
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 120 STKVVEISHTTVLHCSASGNPPPKI--SWIR 148
++ ++H L CS + P KI W R
Sbjct: 129 LSRTEALNHHNTLVCSVTDFYPAKIKVRWFR 159
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 25.3 bits (55), Expect = 9.8
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 6/40 (15%)
Query: 152 PVDTSRNPRY----NLLTSGAPGALQITNSIEEDQGKYEC 187
PV T + Y + L L I++ ED G Y+
Sbjct: 52 PVVTVTHRNYYERIHALGPN--YNLVISDLRMEDAGDYKA 89
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.132 0.396
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,235,873
Number of extensions: 185166
Number of successful extensions: 1551
Number of sequences better than 10.0: 1
Number of HSP's gapped: 969
Number of HSP's successfully gapped: 611
Length of query: 212
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 123
Effective length of database: 4,216,824
Effective search space: 518669352
Effective search space used: 518669352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.4 bits)