BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2442
(111 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 153 bits (387), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 73/102 (71%), Positives = 84/102 (82%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
PPEI +P+NQ V+ GG+ SFYC ARGDP P I WRKNGK+VSGTQSRY V E P G S+
Sbjct: 6 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISI 65
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
LRIEPVR RDDA YECVAENGVGDAVSA+A+LT+YEG++ P
Sbjct: 66 LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTP 107
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
P IT P + ++ G C A G+P P I W KN +V + RY +++ L
Sbjct: 111 PVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKD-----GFL 165
Query: 71 RIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
+IE R D YECVAEN +G S +L V
Sbjct: 166 QIENSRE-EDQGKYECVAENSMGTEHSKATNLYV 198
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 153 bits (386), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 73/102 (71%), Positives = 84/102 (82%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
PPEI +P+NQ V+ GG+ SFYC ARGDP P I WRKNGK+VSGTQSRY V E P G S+
Sbjct: 8 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISI 67
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
LRIEPVR RDDA YECVAENGVGDAVSA+A+LT+YEG++ P
Sbjct: 68 LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTP 109
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
P IT P + ++ G C A G+P P I W KN +V + RY +++ L
Sbjct: 113 PVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKD-----GFL 167
Query: 71 RIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
+IE R D YECVAEN +G S +L V
Sbjct: 168 QIENSRE-EDQGKYECVAENSMGTEHSKATNLYV 200
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 64/103 (62%), Gaps = 4/103 (3%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG-GS 68
PP T P +Q +GG+ SF C A GDP P I W K GK+VS R+ V EF G GS
Sbjct: 6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVS--NQRFEVIEFDDGSGS 63
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
+LRI+P+R RD+A+YECVA N VG+ +S LTV ++ P
Sbjct: 64 VLRIQPLRTPRDEAIYECVASNNVGE-ISVSTRLTVLREDQIP 105
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG-SL 69
P I + P+ + V+ + C A G+P P I W K+ V + + +++
Sbjct: 109 PTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGA 168
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
L+IE + D YECVA N G SA A+L V
Sbjct: 169 LQIEQSEES-DQGKYECVATNSAGTRYSAPANLYV 202
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 85.1 bits (209), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 4/104 (3%)
Query: 9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF-PPGG 67
+PP P++Q +GG+ SF C A GDP P + W K GK+V+ R+ EF G
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNS--QRFETIEFDESAG 62
Query: 68 SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
++LRI+P+R RD+ VYECVA+N VG+ ++ A LTV ++ P
Sbjct: 63 AVLRIQPLRTPRDENVYECVAQNSVGE-ITVHAKLTVLREDQLP 105
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
P I + P+ + V+ + C A G+P P I W K+ V + S +++ G L
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGA--L 166
Query: 71 RIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
+IE D YECVA N G S+ A+L V
Sbjct: 167 QIESSEET-DQGKYECVATNSAGVRYSSPANLYV 199
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 85.1 bits (209), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 4/104 (3%)
Query: 9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP-PGG 67
+PP P++Q +GG+ SF C A GDP P + W K GK+V+ R+ EF G
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNS--QRFETIEFDESAG 62
Query: 68 SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
++LRI+P+R RD+ VYECVA+N VG+ ++ A LTV ++ P
Sbjct: 63 AVLRIQPLRTPRDENVYECVAQNSVGE-ITVHAKLTVLREDQLP 105
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
P ++ P + + GG + C+A G P+P ++W + G + + P G ++L
Sbjct: 206 PRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKW------MQGAEDLTPEDDMPVGRNVL 259
Query: 71 RIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
+ V +D A Y CVA + +G + A A +TV
Sbjct: 260 ELTDV---KDSANYTCVAMSSLG-VIEAVAQITV 289
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
P I + P+ + V+ + C A G+P P I W K+ V + S +++ G L
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGA--L 166
Query: 71 RIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
+IE D YECVA N G S+ A+L V
Sbjct: 167 QIESSEET-DQGKYECVATNSAGVRYSSPANLYV 199
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 85.1 bits (209), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 4/104 (3%)
Query: 9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF-PPGG 67
+PP P++Q +GG+ SF C A GDP P + W K GK+V+ R+ EF G
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNS--QRFETIEFDESAG 62
Query: 68 SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
++LRI+P+R RD+ VYECVA+N VG+ ++ A LTV ++ P
Sbjct: 63 AVLRIQPLRTPRDENVYECVAQNSVGE-ITVHAKLTVLREDQLP 105
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
P I + P+ + V+ + C A G+P P I W K+ V + S +++ G L
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGA--L 166
Query: 71 RIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
+IE D YECVA N G S+ A+L V
Sbjct: 167 QIESSEET-DQGKYECVATNSAGVRYSSPANLYV 199
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 62/96 (64%), Gaps = 4/96 (4%)
Query: 17 PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG-GSLLRIEPV 75
P +Q +GG+ SF C A G+P P I W K GK+VS R+ V EF G GS+LRI+P+
Sbjct: 13 PEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVS--SQRFEVIEFDDGAGSVLRIQPL 70
Query: 76 RHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
R RD+A+YEC A N +G+ ++ A L+V E E+ P
Sbjct: 71 RVQRDEAIYECTATNSLGE-INTSAKLSVLEEEQLP 105
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
P I + P+ + V+ + C A G+P P I W K+ V S +++ G L
Sbjct: 109 PSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGA--L 166
Query: 71 RIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
+IE + D YECVA N G SA A+L V
Sbjct: 167 QIESSEES-DQGKYECVATNSAGTRYSAPANLYV 199
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 4/96 (4%)
Query: 17 PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG-GSLLRIEPV 75
P +Q +GG+ SF C A G+P P I W K GK+VS R+ V EF G GS+LRI+P+
Sbjct: 14 PEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVS--SQRFEVIEFDDGAGSVLRIQPL 71
Query: 76 RHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
R RD+A+YEC A N +G+ ++ A L+V E ++ P
Sbjct: 72 RVQRDEAIYECTATNSLGE-INTSAKLSVLEEDQLP 106
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
P I + P+ + V+ G + C A G+P P I W K+ V S +++ G L
Sbjct: 110 PTIDMGPQLKVVEKGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGA--L 167
Query: 71 RIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
+IE + D YECVA N G SA A+L V
Sbjct: 168 QIESSEES-DQGKYECVATNSAGTRYSAPANLYV 200
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 4/103 (3%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF-PPGGS 68
PP +P +Q +GG+ SF C A GDP P + W K GK+V+ R+ EF G+
Sbjct: 6 PPVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVN--SQRFETIEFDESAGA 63
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
+LRI+P+R RD+ +YECVA+N G+ V+ A LTV ++ P
Sbjct: 64 VLRIQPLRTPRDENIYECVAQNPHGE-VTVHAKLTVLREDQLP 105
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
P I + P+ + V+ + C A G+P P I W K+ V + S +++ GG L
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGG--L 166
Query: 71 RIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEG 107
+IE D YECVA N G S+ A+L V G
Sbjct: 167 QIESSEET-DQGKYECVASNSAGVRYSSPANLYVRVG 202
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 54/102 (52%), Gaps = 10/102 (9%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQ----SRYMVQEFPP 65
PP I P + V G + C A G P P I+W K G+RV + S M+ P
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLL---P 65
Query: 66 GGSL--LRIEPVRHAR-DDAVYECVAENGVGDAVSAEASLTV 104
GSL LRI R +R D+ VY CVA N +G+AVS +ASL V
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 54/102 (52%), Gaps = 10/102 (9%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQ----SRYMVQEFPP 65
PP I P + V G + C A G P P I+W K G+RV + S M+ P
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLL---P 65
Query: 66 GGSL--LRIEPVRHAR-DDAVYECVAENGVGDAVSAEASLTV 104
GSL LRI R +R D+ VY CVA N +G+AVS +ASL V
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 35 RGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGD 94
RG P P I W+K+G + R ++ GG L+ I R + D Y CV N VG+
Sbjct: 137 RGHPEPTISWKKDGSPLDDKDERITIR----GGKLM-ITYTRKS-DAGKYVCVGTNMVGE 190
Query: 95 AVSAEASLTVYE 106
S A LTV E
Sbjct: 191 RESEVAELTVLE 202
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
PP I P NQ + G C A GDP+PVI W K G G R +QE
Sbjct: 8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQ----GT 63
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L+I+ +R + D Y CVA + G+ S A L V E
Sbjct: 64 LQIKNLRIS-DTGTYTCVATSSSGE-TSWSAVLDVTE 98
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
P I P + VK + C G P P I+W K+G+ VS + + +F G
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFF 69
Query: 71 -RIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
R + +D Y CVA+N VG AVS ASL +
Sbjct: 70 YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI 104
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 17/103 (16%)
Query: 12 EITLRPRNQAVKAGGITSFYC-IARGDPIPVIQWRKNG------KRVS-GTQSRYMVQEF 63
+ + P++ V G C +G P P + W K+G K +S G SR + +
Sbjct: 110 DFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVD- 168
Query: 64 PPGGSLL--RIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
GG+LL +EP+ D+ Y+C+A+N VG S+ A L V
Sbjct: 169 --GGNLLISNVEPI----DEGNYKCIAQNLVGTRESSYAKLIV 205
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
P I P + VK + C G P P I+W K+G+ VS + + +F G
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFF 69
Query: 71 -RIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
R + +D Y CVA+N VG AVS ASL +
Sbjct: 70 YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI 104
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 17/103 (16%)
Query: 12 EITLRPRNQAVKAGGITSFYC-IARGDPIPVIQWRKNG------KRVS-GTQSRYMVQEF 63
+ + P++ V G C +G P P + W K+G K +S G SR + +
Sbjct: 110 DFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVD- 168
Query: 64 PPGGSLL--RIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
GG+LL +EP+ D+ Y+C+A+N VG S+ A L V
Sbjct: 169 --GGNLLISNVEPI----DEGNYKCIAQNLVGTRESSYAKLIV 205
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
DPP I + + ++ G C+A G+P P I W +GK+++ RY V ++
Sbjct: 427 FDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIA-NNDRYQVGQYVTVN 485
Query: 68 ----SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
S L I V HA D +Y+C+A++ VG A A L VY
Sbjct: 486 GDVVSYLNITSV-HANDGGLYKCIAKSKVGVA-EHSAKLNVY 525
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P + P Q V G F C G+PI + W K+GK + ++ S+
Sbjct: 343 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE------------SV 390
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEAS 101
LRIE V+ D +Y+C N D SAEAS
Sbjct: 391 LRIESVKK-EDKGMYQCFVRN---DRESAEAS 418
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 20 QAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHAR 79
+A+ AG C G PI I W ++ + + + Q+ P G+L+ IE V
Sbjct: 536 KAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRK----QKVFPNGTLI-IENVERNS 590
Query: 80 DDAVYECVAENGVGDAVSAEASLTV 104
D A Y CVA+N G SA SL V
Sbjct: 591 DQATYTCVAKNQEG--YSARGSLEV 613
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 10/100 (10%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
PP L P ++A G C A G P P + W+ K V T Y ++ ++
Sbjct: 714 PPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWK---KAVGDTPGEY--KDLKKSDNI 768
Query: 70 LRIEPVRHA-----RDDAVYECVAENGVGDAVSAEASLTV 104
E H ++ Y C A NG+G +SA ++V
Sbjct: 769 RVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISV 808
Score = 32.3 bits (72), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 10/72 (13%)
Query: 32 CIARGDPIPVIQW-RKNGKRVSGTQSRYMVQE-----FPPGGSLLRIEPVRHARDDAVYE 85
C A G+P+P I W R +G V + FPP R E R VY
Sbjct: 61 CKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPP----FRAEDYRQEVHAQVYA 116
Query: 86 CVAENGVGDAVS 97
C+A N G +S
Sbjct: 117 CLARNQFGSIIS 128
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 10 PPEITLRPRNQAVKAGGIT-SFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPP-GG 67
P ++L + +G T + C A+G P+PV +W K + + Q+ + G
Sbjct: 247 PKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSG 306
Query: 68 SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
+L+ + V D Y CV N VG S E LTV
Sbjct: 307 TLIIKDAV--VEDSGKYLCVVNNSVGGE-SVETVLTV 340
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 4 KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF 63
++ L PP P N F C G P+P + W KNG V + +V
Sbjct: 306 ELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIV--- 362
Query: 64 PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSA 98
GGS LRI V + D+ Y+CVAEN G+A S+
Sbjct: 363 --GGSNLRILGVVKS-DEGFYQCVAENEAGNAQSS 394
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
Query: 17 PRNQAVKAGGITSFYCIARGD-PIPVIQWRKNGKRVS-GTQSRYMVQEFPPGGSLLRIEP 74
P + GG C A D +PVI+W+K+G ++ G R ++ P GSLL I+
Sbjct: 28 PSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDR---KQQLPNGSLL-IQN 83
Query: 75 VRHAR----DDAVYECVAENG-VGDAVSAEASLTV 104
+ H+R D+ +Y+C A G G +S A + V
Sbjct: 84 ILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMV 118
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 25 GGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG-SLLRIEPVRHARDDAV 83
G C GDP+P I W+KN + ++ V P G + R++P D V
Sbjct: 136 GDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQP----GDSGV 191
Query: 84 YECVAENGVGDAVSAEASLTV 104
Y C A N EA + +
Sbjct: 192 YRCSARNPASTRTGNEAEVRI 212
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homo1
Length = 118
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
PP I P NQ V G C+A G P+P I WRK+G VS SR E +
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLE----NGV 63
Query: 70 LRIEPVRHAR--DDAVYECVAENGVGDA 95
L+I R+A+ D Y C+A G+A
Sbjct: 64 LQI---RYAKLGDTGRYTCIASTPSGEA 88
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 27 ITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYEC 86
+ +F C P P I W +N + +RY ++E G LL I V + DD +Y C
Sbjct: 24 VATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRE---NGQLLTILSVEDS-DDGIYCC 79
Query: 87 VAENGVGDAVSAEASLTV 104
A NGVG AV + +L V
Sbjct: 80 TANNGVGGAVESCGALQV 97
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
P+IT P N + G C G+P P + W K G SR V E GS L
Sbjct: 101 PKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIK-GDSALRENSRIAVLE---SGS-L 155
Query: 71 RIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
RI V+ D Y CVA+N +G A S L V
Sbjct: 156 RIHNVQK-EDAGQYRCVAKNSLGTAYSKLVKLEV 188
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 7 FLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVS-GTQSRYMVQEFPP 65
F + P TL P A + +T C AR +P +W+ NG + G SRY +
Sbjct: 7 FEEQPAHTLFPEGSAEEKVTLT---CRARANPPATYRWKMNGTELKMGPDSRYRLV---- 59
Query: 66 GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASL 102
G L+ PV+ A+D Y+CVA N G VS EASL
Sbjct: 60 AGDLVISNPVK-AKDAGSYQCVATNARGTVVSREASL 95
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 17 PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVR 76
P + G + + C A G+P+P I+WRK + G+Q+ + P LL I+ V
Sbjct: 214 PADTYALTGQMVTLECFAFGNPVPQIKWRK----LDGSQTSKWLSSEP----LLHIQNVD 265
Query: 77 HARDDAVYECVAEN 90
D+ YEC AEN
Sbjct: 266 F-EDEGTYECEAEN 278
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 25 GGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVY 84
G + C+A G P P ++W ++G+ ++ +Q+R V GG L + V D +Y
Sbjct: 309 GSDLRWSCVASGKPRPAVRWLRDGQPLA-SQNRIEVS----GGELRFSKLV--LEDSGMY 361
Query: 85 ECVAENGVGDAVSAEASLTV 104
+CVAEN G V A A LTV
Sbjct: 362 QCVAENKHG-TVYASAELTV 380
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 7 FLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVS-GTQSRYMVQEFPP 65
F+ P + P + K C +G+P P I+W+ NG V G RY V +
Sbjct: 7 FVQEPSHVMFPLDSEEKK---VKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD--- 60
Query: 66 GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASL 102
GSLL P + +D Y+C+A N G VS EA L
Sbjct: 61 -GSLLINNPNK-TQDAGTYQCIATNSFGTIVSREAKL 95
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 11 PEITLR-PRNQAVKAGGITSFYCIARGDPIPVIQWRK-NGKRVSGTQSRYMVQEFPPGGS 68
P+I ++ P + G C A G+P+P I WR+ +GK ++ R+
Sbjct: 204 PKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHK------SNG 257
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
+L I P D YECVAEN G V A+ LT Y
Sbjct: 258 ILEI-PNFQQEDAGSYECVAENSRGKNV-AKGQLTFY 292
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 32 CIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENG 91
C A G P P +W KNG + T+ R +++ L I V + D +Y+CVAEN
Sbjct: 316 CKANGRPKPTYRWLKNGDPLL-TRDRIQIEQ-----GTLNITIV-NLSDAGMYQCVAENK 368
Query: 92 VGDAVSAEASLTV 104
G + + A L+V
Sbjct: 369 HG-VIFSSAELSV 380
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 7 FLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVS-GTQSRYMVQEFPP 65
F+ P + P + K C +G+P P I+W+ NG V G RY V +
Sbjct: 8 FVQEPSHVMFPLDSEEKK---VKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD--- 61
Query: 66 GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASL 102
GSLL P + +D Y+C+A N G VS EA L
Sbjct: 62 -GSLLINNPNK-TQDAGTYQCIATNSFGTIVSREAKL 96
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 11 PEITLR-PRNQAVKAGGITSFYCIARGDPIPVIQWRK-NGKRVSGTQSRYMVQEFPPGGS 68
P+I ++ P + G C A G+P+P I WR+ +GK ++ R+
Sbjct: 205 PKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHK------SNG 258
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
+L I P D YECVAEN G V A+ LT Y
Sbjct: 259 ILEI-PNFQQEDAGSYECVAENSRGKNV-AKGQLTFY 293
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 32 CIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENG 91
C A G P P +W KNG + T+ R +++ L I V + D +Y+CVAEN
Sbjct: 317 CKANGRPKPTYRWLKNGDPLL-TRDRIQIEQ-----GTLNITIV-NLSDAGMYQCVAENK 369
Query: 92 VGDAVSAEASLTV 104
G + + A L+V
Sbjct: 370 HG-VIFSSAELSV 381
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
P RN V+ + C G P P+++W + GK + +Y +QEF G L
Sbjct: 3 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 62
Query: 71 RIEPVRHARDDA-VYECVAENGVGDAVSAEASLTV 104
I V DDA VY+ A N G +VS ASL V
Sbjct: 63 IIASV--TDDDATVYQVRATNQ-GGSVSGTASLEV 94
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
P RN V+ + C G P P+++W + GK + +Y +QEF G L
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 71 RIEPVRHARDDA-VYECVAENGVGDAVSAEASLTV 104
I V DDA VY+ A N G +VS ASL V
Sbjct: 65 IIASV--TDDDATVYQVRATNQ-GGSVSGTASLEV 96
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
P RN V+ + C G P P+++W + GK + +Y +QEF G L
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 71 RIEPVRHARDDA-VYECVAENGVGDAVSAEASLTV 104
I V DDA VY+ A N G +VS ASL V
Sbjct: 65 IIASV--TDDDATVYQVRATNQ-GGSVSGTASLEV 96
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 18 RNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRH 77
++ KAG +T YC+ +P+ + KNGK V+G + + G L +
Sbjct: 220 KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTL- 278
Query: 78 ARDDAVYECVAENGVGDAVSAEASLTVYEG---EEKP 111
D+ VY C +NGVG LTV E+KP
Sbjct: 279 PEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKP 315
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 4 KVRFLDPPEITLRPRNQ-AVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQE 62
K+ + P+ +P VK G + C G P P + W N K +SG R V +
Sbjct: 302 KLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSG--GRATVTD 359
Query: 63 FPPGGSLLRIEPVRHARDDAVYECVAENGVGD 94
S L I+ V++ D Y C A N GD
Sbjct: 360 -----SGLVIKGVKNG-DKGYYGCRATNEHGD 385
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRI 72
I +PR+ V G F C G+P+P + W + G+ +S T +R+ V S I
Sbjct: 11 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLS-TSARHQVTT-TKYKSTFEI 68
Query: 73 EPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
V+ A D+ Y V EN G AE +LT+
Sbjct: 69 SSVQ-ASDEGNYSVVVENSEGKQ-EAEFTLTI 98
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRI 72
I +PR+ V G F C G+P+P + W + G+ +S T +R+ V S I
Sbjct: 17 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLS-TSARHQVTT-TKYKSTFEI 74
Query: 73 EPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
V+ A D+ Y V EN G AE +LT+
Sbjct: 75 SSVQ-ASDEGNYSVVVENSEGKQ-EAEFTLTI 104
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P + P Q V G F C G+PI + W K+GK + ++ S+
Sbjct: 313 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE------------SV 360
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEAS 101
LRIE V+ D +Y+C N D SAEAS
Sbjct: 361 LRIESVKK-EDKGMYQCFVRN---DRESAEAS 388
Score = 32.3 bits (72), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 10/72 (13%)
Query: 32 CIARGDPIPVIQW-RKNGKRVSGTQSRYMVQE-----FPPGGSLLRIEPVRHARDDAVYE 85
C A G+P+P I W R +G V + FPP R E R VY
Sbjct: 32 CKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPP----FRAEDYRQEVHAQVYA 87
Query: 86 CVAENGVGDAVS 97
C+A N G +S
Sbjct: 88 CLARNQFGSIIS 99
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 29 SFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPP-GGSLLRIEPVRHARDDAVYECV 87
S C A+G P P +W K + + Q+ + G+L+ + V D Y CV
Sbjct: 237 SLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV--VEDSGKYLCV 294
Query: 88 AENGVGDAVSAEASLTV 104
N VG S E LTV
Sbjct: 295 VNNSVGGE-SVETVLTV 310
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P + P Q V G F C G+PI + W K+GK + ++ S+
Sbjct: 307 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE------------SV 354
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEAS 101
LRIE V+ D +Y+C N D SAEAS
Sbjct: 355 LRIESVKK-EDKGMYQCFVRN---DRESAEAS 382
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 10/72 (13%)
Query: 32 CIARGDPIPVIQW-RKNGKRVSGTQSRYMVQE-----FPPGGSLLRIEPVRHARDDAVYE 85
C A G+P+P I W R +G V + FPP R E R VY
Sbjct: 26 CKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPP----FRAEDYRQEVHAQVYA 81
Query: 86 CVAENGVGDAVS 97
C+A N G +S
Sbjct: 82 CLARNQFGSIIS 93
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 29 SFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPP-GGSLLRIEPVRHARDDAVYECV 87
S C A+G P P +W K + + Q+ + G+L+ + V D Y CV
Sbjct: 231 SLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV--VEDSGKYLCV 288
Query: 88 AENGVGDAVSAEASLTV 104
N VG S E LTV
Sbjct: 289 VNNSVGGE-SVETVLTV 304
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P + P Q V G F C G+PI + W K+GK + ++ S+
Sbjct: 310 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE------------SV 357
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEAS 101
LRIE V+ D +Y+C N D SAEAS
Sbjct: 358 LRIESVKK-EDKGMYQCFVRN---DRESAEAS 385
Score = 32.3 bits (72), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 10/77 (12%)
Query: 32 CIARGDPIPVIQW-RKNGKRVSGTQSRYMVQE-----FPPGGSLLRIEPVRHARDDAVYE 85
C A G+P+P I W R +G V + FPP R E R VY
Sbjct: 26 CKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPP----FRAEDYRQEVHAQVYA 81
Query: 86 CVAENGVGDAVSAEASL 102
C+A N G +S + +
Sbjct: 82 CLARNQFGSIISRDVHV 98
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 29 SFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPP-GGSLLRIEPVRHARDDAVYECV 87
S C+A+ P P +W K + + Q+ + G+L+ + V D Y CV
Sbjct: 234 SLLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV--VEDSGKYLCV 291
Query: 88 AENGVGDAVSAEASLTV 104
N VG S E LTV
Sbjct: 292 VNNSVGGE-SVETVLTV 307
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 10/74 (13%)
Query: 32 CIARGDPIPVIQWRKNGKRVS---GTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA 88
C AR P +W+ NG + G++ + + GG+L+ + P + A+D VY+C+A
Sbjct: 28 CRARASPPATYRWKMNGTEMKLEPGSRHQLV------GGNLVIMNPTK-AQDAGVYQCLA 80
Query: 89 ENGVGDAVSAEASL 102
N VG VS EA L
Sbjct: 81 SNPVGTVVSREAIL 94
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 37/87 (42%), Gaps = 10/87 (11%)
Query: 8 LDPPEITLR-PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG 66
L P I R P G + C A G+P+P I+WRK V G+ S P
Sbjct: 203 LFAPSIKARFPAETYALVGQQVTLECFAFGNPVPRIKWRK----VDGSLSPQWTTAEP-- 256
Query: 67 GSLLRIEPVRHARDDAVYECVAENGVG 93
L+I P D+ YEC AEN G
Sbjct: 257 --TLQI-PSVSFEDEGTYECEAENSKG 280
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Query: 32 CIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENG 91
C A G P P ++W +NG+ ++ +Q+R V S L +E D +Y+CVAEN
Sbjct: 315 CAAAGKPRPTVRWLRNGEPLA-SQNRVEVLAGDLRFSKLSLE------DSGMYQCVAENK 367
Query: 92 VGDAVSAEASLTV 104
G + A A L V
Sbjct: 368 HG-TIYASAELAV 379
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 22 VKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDD 81
V G F C A GDP P I W K + +S + FP G +R V +D+
Sbjct: 397 VDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQV---QDN 453
Query: 82 AVYECVAENGVGD 94
Y C+A N G+
Sbjct: 454 GTYLCIAANAGGN 466
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P +I ++ ++ G + C A G+P+P I+WRK + + T E G++
Sbjct: 113 PADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPST------AEISTSGAV 166
Query: 70 LRIEPVRHARDDAVYECVAEN 90
L+I ++ D+ +YEC AEN
Sbjct: 167 LKIFNIQ-LEDEGIYECEAEN 186
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
Query: 10 PPEITLRPR--NQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
PP + R N G + C A G P P + W K+G+ + + F
Sbjct: 194 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS 253
Query: 68 SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
S L I V D+A Y C+AEN G+ A L V+
Sbjct: 254 SELTIRNV-DKNDEAEYVCIAENKAGEQ-DASIHLKVF 289
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
P I ++ V + + F A G+P P W K+GK ++ +Y + E GG L
Sbjct: 7 PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAIT-QGGKYKLSE-DKGGFFL 64
Query: 71 RIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
I D +Y C +N G +VS+ LT+
Sbjct: 65 EIHKT-DTSDSGLYTCTVKNSAG-SVSSSCKLTI 96
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVS-GTQSRYMVQEFPPGGSL 69
P P + V+ G + C G P P + W+ +GK V + + +V+E G
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVREN--GVHS 67
Query: 70 LRIEPVRHARDDAVYECVAENGVG 93
L IEPV +RD +Y C+A N G
Sbjct: 68 LIIEPVT-SRDAGIYTCIATNRAG 90
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 35/93 (37%), Gaps = 12/93 (12%)
Query: 12 EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR 71
+IT+ P ++AV AG C A G P QW K M +E P G +
Sbjct: 20 KITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFK------------MNKEIPNGNTSEL 67
Query: 72 IEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
I H +D Y C N S + L V
Sbjct: 68 IFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDV 100
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 12 EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSG-TQSRYMV 60
+I + P +Q + G C+A G PIP QW KN ++ T+ YMV
Sbjct: 120 QICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMV 169
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
P + ++ AV G C RG P+P I W NG+ + +Y G + L
Sbjct: 12 PSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPI-----QYARSTCEAGVAEL 66
Query: 71 RIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
I+ D Y C+AEN +G VS A +TV+
Sbjct: 67 HIQDAL-PEDHGTYTCLAENALGQ-VSCSAWVTVH 99
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 16/87 (18%)
Query: 15 LRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR--- 71
+ R AV A F C A G+P+P ++W KNGK QE GG +R
Sbjct: 17 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK--------QEHRIGGYKVRNQH 68
Query: 72 ----IEPVRHARDDAVYECVAENGVGD 94
+E V D Y CV EN G
Sbjct: 69 WSLIMESVV-PSDKGNYTCVVENEYGS 94
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 16/87 (18%)
Query: 15 LRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR--- 71
+ R AV A F C A G+P+P ++W KNGK QE GG +R
Sbjct: 18 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK--------QEHRIGGYKVRNQH 69
Query: 72 ----IEPVRHARDDAVYECVAENGVGD 94
+E V D Y CV EN G
Sbjct: 70 WSLIMESVV-PSDKGNYTCVVENEYGS 95
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 16/87 (18%)
Query: 15 LRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR--- 71
+ R AV A F C A G+P+P ++W KNGK QE GG +R
Sbjct: 13 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK--------QEHRIGGYKVRNQH 64
Query: 72 ----IEPVRHARDDAVYECVAENGVGD 94
+E V D Y CV EN G
Sbjct: 65 WSLIMESVV-PSDKGNYTCVVENEYGS 90
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
Query: 8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
+ PP P N ++ G G P P + W NG+ V M+ G
Sbjct: 3 MGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVS-EKGL 61
Query: 68 SLLRIEPVRHARDDAVYECVAENGVGDA 95
L E VR A D Y CVA+N G+A
Sbjct: 62 HSLIFEVVR-ASDAGAYACVAKNRAGEA 88
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 42/99 (42%), Gaps = 17/99 (17%)
Query: 15 LRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR--- 71
+ R AV A F C A G+P+P ++W KNGK QE GG +R
Sbjct: 24 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK--------QEHRIGGYKVRNQH 75
Query: 72 ----IEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
+E V D Y CV EN G +++ L V E
Sbjct: 76 WSLIMESVV-PSDKGNYTCVVENEYG-SINHTYHLDVVE 112
Score = 28.5 bits (62), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 39/107 (36%), Gaps = 17/107 (15%)
Query: 17 PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP------------ 64
P N + GG F C D P IQW K+ V S+Y P
Sbjct: 125 PANASTVVGGDVEFVCKVYSDAQPHIQWIKH---VEKNGSKYGPDGLPYLKVLKHSGINS 181
Query: 65 PGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
+L + V A D Y C N +G A + A LTV ++ P
Sbjct: 182 SNAEVLALFNVTEA-DAGEYICKVSNYIGQA-NQSAWLTVLPKQQAP 226
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 42/99 (42%), Gaps = 17/99 (17%)
Query: 15 LRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR--- 71
+ R AV A F C A G+P+P ++W KNGK QE GG +R
Sbjct: 14 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK--------QEHRIGGYKVRNQH 65
Query: 72 ----IEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
+E V D Y CV EN G +++ L V E
Sbjct: 66 WSLIMESVV-PSDKGNYTCVVENEYG-SINHTYHLDVVE 102
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 37/99 (37%), Gaps = 13/99 (13%)
Query: 17 PRNQAVKAGGITSFYCIARGDPIPVIQW----RKNGKRVSGTQSRYM-------VQEFPP 65
P N + GG F C D P IQW KNG + Y+ V
Sbjct: 115 PANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDK 174
Query: 66 GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
+L I V D Y C+A N +G + + A LTV
Sbjct: 175 EIEVLYIRNVTF-EDAGEYTCLAGNSIGISFHS-AWLTV 211
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRK--NG--KRVSGTQSRYMVQEFPPG 66
P+IT R++ G YC + G P P WRK NG + +S + R+ +
Sbjct: 93 PDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIIN-KEN 151
Query: 67 GSLLRIEPVRHARDDAVYECVAENGVGDA 95
+ L I ++ D YEC A N +G A
Sbjct: 152 YTELNIVNLQITEDPGEYECNATNSIGSA 180
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 42/99 (42%), Gaps = 17/99 (17%)
Query: 15 LRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR--- 71
+ R AV A F C A G+P+P ++W KNGK QE GG +R
Sbjct: 16 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK--------QEHRIGGYKVRNQH 67
Query: 72 ----IEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
+E V D Y CV EN G +++ L V E
Sbjct: 68 WSLIMESVV-PSDKGNYTCVVENEYG-SINHTYHLDVVE 104
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 37/99 (37%), Gaps = 13/99 (13%)
Query: 17 PRNQAVKAGGITSFYCIARGDPIPVIQW----RKNGKRVSGTQSRYM-------VQEFPP 65
P N + GG F C D P IQW KNG + Y+ V
Sbjct: 117 PANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDK 176
Query: 66 GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
+L I V D Y C+A N +G + + A LTV
Sbjct: 177 EIEVLYIRNVTF-EDAGEYTCLAGNSIGISFHS-AWLTV 213
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 42/99 (42%), Gaps = 17/99 (17%)
Query: 15 LRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR--- 71
+ R AV A F C A G+P+P ++W KNGK QE GG +R
Sbjct: 16 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK--------QEHRIGGYKVRNQH 67
Query: 72 ----IEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
+E V D Y CV EN G +++ L V E
Sbjct: 68 WSLIMESVV-PSDKGNYTCVVENEYG-SINHTYHLDVVE 104
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 37/99 (37%), Gaps = 13/99 (13%)
Query: 17 PRNQAVKAGGITSFYCIARGDPIPVIQW----RKNGKRVSGTQSRYM-------VQEFPP 65
P N + GG F C D P IQW KNG + Y+ V
Sbjct: 117 PANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDK 176
Query: 66 GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
+L I V D Y C+A N +G + + A LTV
Sbjct: 177 EIEVLYIRNVTF-EDAGEYTCLAGNSIGISFHS-AWLTV 213
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 42/99 (42%), Gaps = 17/99 (17%)
Query: 15 LRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR--- 71
+ R AV A F C A G+P+P ++W KNGK QE GG +R
Sbjct: 16 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK--------QEHRIGGYKVRNQH 67
Query: 72 ----IEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
+E V D Y CV EN G +++ L V E
Sbjct: 68 WSLIMESVV-PSDKGNYTCVVENEYG-SINHTYHLDVVE 104
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 37/99 (37%), Gaps = 13/99 (13%)
Query: 17 PRNQAVKAGGITSFYCIARGDPIPVIQW----RKNGKRVSGTQSRYM-------VQEFPP 65
P N + GG F C D P IQW KNG + Y+ V
Sbjct: 117 PANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDK 176
Query: 66 GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
+L I V D Y C+A N +G + + A LTV
Sbjct: 177 EIEVLYIRNVTF-EDAGEYTCLAGNSIGISFHS-AWLTV 213
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 42/99 (42%), Gaps = 17/99 (17%)
Query: 15 LRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR--- 71
+ R AV A F C A G+P+P ++W KNGK QE GG +R
Sbjct: 15 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK--------QEHRIGGYKVRNQH 66
Query: 72 ----IEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
+E V D Y CV EN G +++ L V E
Sbjct: 67 WSLIMESVV-PSDKGNYTCVVENEYG-SINHTYHLDVVE 103
Score = 28.5 bits (62), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 37/99 (37%), Gaps = 13/99 (13%)
Query: 17 PRNQAVKAGGITSFYCIARGDPIPVIQW----RKNGKRVSGTQSRYM-------VQEFPP 65
P N + GG F C D P IQW KNG + Y+ V
Sbjct: 116 PANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDK 175
Query: 66 GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
+L I V D Y C+A N +G + + A LTV
Sbjct: 176 EIEVLYIRNVTF-EDAGEYTCLAGNSIGISFHS-AWLTV 212
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
F17r Mutant Complex
Length = 109
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
PP RPR V +G C+ G+P PV+ W K G++++ ++ + G
Sbjct: 13 SPPCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGL 72
Query: 69 LLRIEPVRHARDDAVYECVAEN 90
LL D VY C A N
Sbjct: 73 LLT---AALPTDAGVYVCRARN 91
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 42/99 (42%), Gaps = 17/99 (17%)
Query: 15 LRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR--- 71
+ R AV A F C A G+P+P ++W KNGK QE GG +R
Sbjct: 24 MEKRLHAVPAFNTVKFRCPAGGNPMPTMRWLKNGKEFK--------QEHRIGGYKVRNQH 75
Query: 72 ----IEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
+E V D Y CV EN G +++ L V E
Sbjct: 76 WSLIMESVV-PSDKGNYTCVVENEYG-SINHTYHLDVVE 112
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 38/107 (35%), Gaps = 17/107 (15%)
Query: 17 PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP------------ 64
P N + GG F C D P IQW K V S+Y P
Sbjct: 125 PANASTVVGGDVEFVCKVYSDAQPHIQWI---KHVEKNGSKYGPDGLPYLKVLKHSGINS 181
Query: 65 PGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
+L + V A D Y C N +G A + A LTV ++ P
Sbjct: 182 SNAEVLALFNVTEA-DAGEYICKVSNYIGQA-NQSAWLTVLPKQQAP 226
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 44/105 (41%), Gaps = 13/105 (12%)
Query: 17 PRNQAVKAGGITSFYCIARGDPIPVIQWRK----NGKRVSGTQSRYMVQEFPPGG--SLL 70
P N+ V G F C DP P IQW K NG ++ G + VQ G +
Sbjct: 122 PANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKI-GPDNLPYVQILKTAGVNTTD 180
Query: 71 RIEPVRHAR-----DDAVYECVAENGVGDAVSAEASLTVYEGEEK 110
+ V H R D Y C+A N +G + A LTV E E+
Sbjct: 181 KEMEVLHLRNVSFEDAGEYTCLAGNSIGLS-HHSAWLTVLEALEE 224
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 15/93 (16%)
Query: 20 QAVKAGGITSFYCIARGDPIPVIQWRKNGK------RVSGTQSRYMVQEFPPGGSLLRIE 73
AV A F C + G P P ++W KNGK R+ G + RY S++
Sbjct: 26 HAVPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATW------SIIMDS 79
Query: 74 PVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
V D Y C+ EN G +++ L V E
Sbjct: 80 VV--PSDKGNYTCIVENEYG-SINHTYQLDVVE 109
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 44/105 (41%), Gaps = 13/105 (12%)
Query: 17 PRNQAVKAGGITSFYCIARGDPIPVIQWRK----NGKRVSGTQSRYMVQEFPPGG--SLL 70
P N+ V G F C DP P IQW K NG ++ G + VQ G +
Sbjct: 123 PANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKI-GPDNLPYVQILKTAGVNTTD 181
Query: 71 RIEPVRHAR-----DDAVYECVAENGVGDAVSAEASLTVYEGEEK 110
+ V H R D Y C+A N +G + A LTV E E+
Sbjct: 182 KEMEVLHLRNVSFEDAGEYTCLAGNSIGLS-HHSAWLTVLEALEE 225
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 15/93 (16%)
Query: 20 QAVKAGGITSFYCIARGDPIPVIQWRKNGK------RVSGTQSRYMVQEFPPGGSLLRIE 73
AV A F C + G P P ++W KNGK R+ G + RY S++
Sbjct: 27 HAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATW------SIIMDS 80
Query: 74 PVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
V D Y C+ EN G +++ L V E
Sbjct: 81 VV--PSDKGNYTCIVENEYG-SINHTYQLDVVE 110
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 44/105 (41%), Gaps = 13/105 (12%)
Query: 17 PRNQAVKAGGITSFYCIARGDPIPVIQWRK----NGKRVSGTQSRYMVQEFPPGG--SLL 70
P N+ V G F C DP P IQW K NG ++ G + VQ G +
Sbjct: 122 PANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKI-GPDNLPYVQILKTAGVNTTD 180
Query: 71 RIEPVRHAR-----DDAVYECVAENGVGDAVSAEASLTVYEGEEK 110
+ V H R D Y C+A N +G + A LTV E E+
Sbjct: 181 KEMEVLHLRNVSFEDAGEYTCLAGNSIGLS-HHSAWLTVLEALEE 224
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 15/93 (16%)
Query: 20 QAVKAGGITSFYCIARGDPIPVIQWRKNGK------RVSGTQSRYMVQEFPPGGSLLRIE 73
AV A F C + G P P ++W KNGK R+ G + RY S++
Sbjct: 26 HAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATW------SIIMDS 79
Query: 74 PVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
V D Y C+ EN G +++ L V E
Sbjct: 80 VV--PSDKGNYTCIVENEYG-SINHTYQLDVVE 109
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
P ++ ++ + G +F C G+P P I W K+GK++S Y +Q G L
Sbjct: 8 PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSL 67
Query: 71 RIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
DD Y +A N G VS L V
Sbjct: 68 HTT-ASTLDDDGNYTIMAANPQG-RVSCTGRLMV 99
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From
The Neural Cell Adhesion Molecule
Length = 107
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 10 PPEITLRPR--NQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVS--GTQSRYMVQEFPP 65
PP + R N + C A G P P + W K+G+ + + +Y F
Sbjct: 11 PPSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKY---SFNY 67
Query: 66 GGSLLRIEPVRHARDDAVYECVAENGVGD 94
GS L I+ V + D+A Y C+AEN G+
Sbjct: 68 DGSELIIKKVDKS-DEAEYICIAENKAGE 95
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
P ++ ++ + G +F C G+P P I W K+GK++S Y +Q G L
Sbjct: 9 PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSL 68
Query: 71 RIEPVRHARDDAVYECVAEN 90
DD Y +A N
Sbjct: 69 HTT-ASTLDDDGNYTIMAAN 87
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 31/79 (39%), Gaps = 14/79 (17%)
Query: 21 AVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARD 80
AV A F C A G+P P I W KNG+ G E GG LR + +
Sbjct: 134 AVPAANTVRFRCPAAGNPTPSISWLKNGREFRG--------EHRIGGIKLRHQQWSLVME 185
Query: 81 DAV------YECVAENGVG 93
V Y CV EN G
Sbjct: 186 SVVPSDRGNYTCVVENKFG 204
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 41/105 (39%), Gaps = 13/105 (12%)
Query: 17 PRNQAVKAGGITSFYCIARGDPIPVIQWRK----NGKRVSGTQSRYMVQEFPPGGS---- 68
P NQ G F+C D P IQW K NG +V + Y+ G +
Sbjct: 229 PANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDK 288
Query: 69 ---LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEK 110
+L + V D Y C+A N +G + A L V EE+
Sbjct: 289 ELEVLSLHNVTF-EDAGEYTCLAGNSIGFS-HHSAWLVVLPAEEE 331
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 37/92 (40%), Gaps = 15/92 (16%)
Query: 21 AVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARD 80
AV A F C A G+P P I W KNG+ G E GG LR + +
Sbjct: 26 AVPAANTVRFRCPAAGNPTPSISWLKNGREFRG--------EHRIGGIKLRHQQWSLVME 77
Query: 81 DAV------YECVAENGVGDAVSAEASLTVYE 106
V Y CV EN G ++ +L V E
Sbjct: 78 SVVPSDRGNYTCVVENKFG-SIRQTYTLDVLE 108
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 36/92 (39%), Gaps = 11/92 (11%)
Query: 17 PRNQAVKAGGITSFYCIARGDPIPVIQWRK----NGKRVSGTQSRYM------VQEFPPG 66
P NQ G F+C D P IQW K NG +V + Y+ + E
Sbjct: 121 PANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEA 180
Query: 67 GSLLRIEPVRHARDDAVYECVAENGVGDAVSA 98
LR+ V RD Y C A N +G A A
Sbjct: 181 DVRLRLANVSE-RDGGEYLCRATNFIGVAEKA 211
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
PP + +Q+V+ G +G+P PV+ W +N + V Q R+ + G L
Sbjct: 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEE---AEGGL 61
Query: 70 LRIEPVRHARDDA-VYECVAENGVGDAVSAEASLTV 104
R+ + R DA Y C A N G A EA L V
Sbjct: 62 CRLRILAAERGDAGFYTCKAVNEYG-ARQCEARLEV 96
>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|B Chain B, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|C Chain C, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|D Chain D, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 91
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 12 EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSG-TQSRYMV 60
+I + P +Q + G C+A G PIP QW KN ++ T+ YMV
Sbjct: 5 QICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMV 54
>pdb|3SO5|A Chain A, Crystal Structure Of An Immunoglobulin I-Set Domain Of
Lrig3 Protein (Lrig3) From Mus Musculus At 1.70 A
Resolution
pdb|3SO5|B Chain B, Crystal Structure Of An Immunoglobulin I-Set Domain Of
Lrig3 Protein (Lrig3) From Mus Musculus At 1.70 A
Resolution
Length = 112
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 7/101 (6%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPI--PVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
P+IT++P Q+ G SF C A W + + + + GG
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPXTFAWXXDNEALQDAEXENYAHLRAQGGE 70
Query: 69 LLRIEPVRHARD-----DAVYECVAENGVGDAVSAEASLTV 104
L + R+ + Y+CV N G + S A LT+
Sbjct: 71 LXEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
Query: 9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
+ P I ++ K G C G P+P I+W + GK + ++ M + G +
Sbjct: 6 EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSD---GRT 62
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASL 102
D+ VY C+A N VG+ ++ L
Sbjct: 63 HTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLL 96
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
PP PR V +G C+ G+P PV+ W K G++++ ++ + G
Sbjct: 13 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGL 72
Query: 69 LLRIEPVRHARDDAVYECVAEN 90
LL D VY C A N
Sbjct: 73 LLT---AALPTDAGVYVCRARN 91
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 35.8 bits (81), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 31/83 (37%), Gaps = 14/83 (16%)
Query: 18 RNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR------ 71
R AV A F C A G+P P +W KNGK QE GG +R
Sbjct: 19 RLHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFK--------QEHRIGGYKVRNQHWSL 70
Query: 72 IEPVRHARDDAVYECVAENGVGD 94
I D Y CV EN G
Sbjct: 71 IXESVVPSDKGNYTCVVENEYGS 93
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 37/99 (37%), Gaps = 13/99 (13%)
Query: 17 PRNQAVKAGGITSFYCIARGDPIPVIQW----RKNGKRVSGTQSRYM-------VQEFPP 65
P N + GG F C D P IQW KNG + Y+ V
Sbjct: 117 PANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDK 176
Query: 66 GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
+L I V D Y C+A N +G + + A LTV
Sbjct: 177 EIEVLYIRNVTF-EDAGEYTCLAGNSIGISFHS-AWLTV 213
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex
With Obscurin- Like 1
Length = 107
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
PP PR V +G C+ G+P PV+ W K G++++ ++ + G
Sbjct: 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGL 71
Query: 69 LLRIEPVRHARDDAVYECVAEN 90
LL D VY C A N
Sbjct: 72 LLT---AALPTDAGVYVCRARN 90
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 37/95 (38%), Gaps = 15/95 (15%)
Query: 18 RNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR------ 71
R AV A F C A G+P P +W KNGK QE GG +R
Sbjct: 26 RLHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFK--------QEHRIGGYKVRNQHWSL 77
Query: 72 IEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
I D Y CV EN G +++ L V E
Sbjct: 78 IXESVVPSDKGNYTCVVENEYG-SINHTYHLDVVE 111
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 38/107 (35%), Gaps = 17/107 (15%)
Query: 17 PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP------------ 64
P N + GG F C D P IQW K V S+Y P
Sbjct: 124 PANASTVVGGDVEFVCKVYSDAQPHIQWI---KHVEKNGSKYGPDGLPYLKVLKHSGINS 180
Query: 65 PGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
+L + V A D Y C N +G A + A LTV ++ P
Sbjct: 181 SNAEVLALFNVTEA-DAGEYICKVSNYIGQA-NQSAWLTVLPKQQAP 225
>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|B Chain B, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|C Chain C, Crystal Structure Of Titin Domain M4, Tetragonal Form
Length = 103
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
P ITLR R+ V G T F + P ++W NG + + + + +L
Sbjct: 9 PRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIH----YTNTSGVL 64
Query: 71 RIEPVR-HARDDAVYECVAENGVGDAVSAEASLTVYEGE 108
+E + H D Y V N G+A S A+L V G+
Sbjct: 65 TLEILDCHTDDSGTYRAVCTNYKGEA-SDYATLDVTGGD 102
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 10 PPEITL--RPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
PP I++ + N + G +F C A G P P I W +NGK + + +Y+++
Sbjct: 96 PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENE-KYILK---GSN 151
Query: 68 SLLRIEPVRHARDDAVYECVAENGVGD 94
+ L + + ++ D Y C A N G+
Sbjct: 152 TELTVRNIINS-DGGPYVCRATNKAGE 177
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRV-SGTQSRYMVQEFPPGGS 68
PP+I P + ++ G + + C G+P P + W G+++ S Q R+ ++ +
Sbjct: 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTT 64
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
L+ ++ + +D +Y N G S A++ ++
Sbjct: 65 LIIMDVQK--QDGGLYTLSLGNEFG---SDSATVNIH 96
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRV-SGTQSRYMVQEFPPGGS 68
PP+I P + ++ G + + C G+P P + W G+++ S Q R+ ++ +
Sbjct: 7 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTT 66
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
L+ ++ + +D +Y N G S A++ ++
Sbjct: 67 LIIMDVQK--QDGGLYTLSLGNEFG---SDSATVNIH 98
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 10 PPEITL--RPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
PP I++ + N + G +F C A G P P I W +NGK + + +Y+++
Sbjct: 192 PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENE-KYILK---GSN 247
Query: 68 SLLRIEPVRHARDDAVYECVAENGVGD 94
+ L + + ++ D Y C A N G+
Sbjct: 248 TELTVRNIINS-DGGPYVCRATNKAGE 273
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 12 EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR 71
++T+ + G F C A G+P + + G+++ TQ R +VQ+ G R
Sbjct: 6 QVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQ-RVVVQK---EGVRSR 61
Query: 72 IEPVRHARDDA-VYECVAENGVGDAVSAEASLTVYE 106
+ +DA +Y C A + G A L +Y+
Sbjct: 62 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ 97
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL- 69
P T + V G F C G P P + W K+ V +SR+ ++ G+
Sbjct: 42 PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVK--ESRHFQIDYDEEGNCS 99
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAV 96
L I V DDA Y C A N +G+A
Sbjct: 100 LTISEV-CGDDDAKYTCKAVNSLGEAT 125
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL- 69
P T + V G F C G P P + W K+ V +SR+ ++ G+
Sbjct: 42 PYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVK--ESRHFQIDYDEEGNCS 99
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAV 96
L I V DDA Y C A N +G+A
Sbjct: 100 LTISEV-CGDDDAKYTCKAVNSLGEAT 125
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 7 FLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQ----- 61
F+ P I L+ N+ G + C A G+PIP I W++ + T+ +
Sbjct: 93 FVQPHIIQLK--NETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEV 150
Query: 62 EFPPGGSLLRIEPVRHARDDAVYECVAENGVG 93
+ G S L I+ V+ + D Y+C A + +G
Sbjct: 151 KGQHGSSSLHIKDVKLS-DSGRYDCEAASRIG 181
Score = 32.3 bits (72), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 11 PEITL--RPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
P I++ + N + G +F C A G P P I W +NGK + + +Y+++ +
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENE-KYILK---GSNT 58
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
L + + ++ D Y C A N G+ +A L V+
Sbjct: 59 ELTVRNIINS-DGGPYVCRATNKAGED-EKQAFLQVF 93
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 5 VRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRV-SGTQSRYMVQEF 63
++ +PP +P G C +G P + W K+ + + SG + + M + F
Sbjct: 379 LKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENF 438
Query: 64 PPGGSLLRIEPVRHARDDAVYECVAENGVG 93
+L ++ + D Y+C A N VG
Sbjct: 439 LTSIHILNVD----SADIGEYQCKASNDVG 464
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Query: 8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
++PP + G + C G P I W K ++ + M +F
Sbjct: 3 MEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKM--QFKNNV 60
Query: 68 SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
+ L I V H+ D Y C AEN VG AV++ A L + E
Sbjct: 61 ASLVINKVDHS-DVGEYTCKAENSVG-AVASSAVLVIKE 97
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 5 VRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRV-SGTQSRYMVQEF 63
++ +PP +P G C +G P + W K+ + + SG + + M + F
Sbjct: 187 LKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENF 246
Query: 64 PPGGSLLRIEPVRHARDDAVYECVAENGVG 93
+L ++ + D Y+C A N VG
Sbjct: 247 LTSIHILNVD----SADIGEYQCKASNDVG 272
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
P IT NQ G C A G+P P I W K+ + + + +V G L
Sbjct: 11 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETL--VEDSGIV--LKDGNRNL 66
Query: 71 RIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEK 110
I VR D+ +Y C A + +G A EA + +EK
Sbjct: 67 TIRRVRK-EDEGLYTCQACSVLGCA-KVEAFFIIEGAQEK 104
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 5 VRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRV-SGTQSRYMVQEF 63
++ +PP +P G C +G P + W K+ + + SG + + M + F
Sbjct: 187 LKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENF 246
Query: 64 PPGGSLLRIEPVRHARDDAVYECVAENGVG 93
+L ++ + D Y+C A N VG
Sbjct: 247 LTSIHILNVD----SADIGEYQCKASNDVG 272
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 19 NQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHA 78
+Q V G CIA G P P I W K G + ++++ + F LRI V
Sbjct: 231 SQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKF--ENF---NKALRITNVSE- 284
Query: 79 RDDAVYECVAENGVG 93
D Y C+A N +G
Sbjct: 285 EDSGEYFCLASNKMG 299
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 18/105 (17%)
Query: 10 PPEITLRP-RNQAVKAGGITSFYCIARGDPIPVIQWRKNGK--------RVSG-TQSRYM 59
PP IT + ++ V C A+G+P P W +N + RVS +S +
Sbjct: 16 PPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTL 75
Query: 60 VQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
V +F GG R + Y+C A N G A+S L V
Sbjct: 76 VIDFRSGG--------RPEEYEGEYQCFARNKFGTALSNRIRLQV 112
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 18/84 (21%)
Query: 17 PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPP-------GGSL 69
P+N + G C A G+P P +QW NG+ +Q PP G ++
Sbjct: 319 PKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEP---------LQSAPPNPNREVAGDTI 369
Query: 70 LRIEPVRHARDDAVYECVAENGVG 93
+ + +R AVY+C N G
Sbjct: 370 IFRDTQISSR--AVYQCNTSNEHG 391
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
P IT NQ G C A G+P P I W K+ + + + G L
Sbjct: 667 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL----KDGNRNL 722
Query: 71 RIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEK 110
I VR D+ +Y C A + +G A EA + +EK
Sbjct: 723 TIRRVR-KEDEGLYTCQACSVLGCA-KVEAFFIIEGAQEK 760
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
P T ++ V G +F G P+P + W ++G+ +S + + F G + L
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKL 65
Query: 71 RIEPVRHARDDAVYECVAENGVGDAVS 97
I V A + Y A NG G A S
Sbjct: 66 TIPAVTKA-NSGRYSLKATNGSGQATS 91
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 7/103 (6%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG-- 67
PP R ++ V+ G G P PV+++ ++G + + + QE G
Sbjct: 103 PPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQE---GDLY 159
Query: 68 SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEK 110
SLL E + D Y A N VG A S L E E+
Sbjct: 160 SLLIAEA--YPEDSGTYSVNATNSVGRATSTAELLVQGETREE 200
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 32.3 bits (72), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
P T ++ V G +F G P+P + W ++G+ +S + + F G + L
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKL 65
Query: 71 RIEPVRHARDDAVYECVAENGVGDAVS 97
I V A + Y A NG G A S
Sbjct: 66 TIPAVTKA-NSGRYSLKATNGSGQATS 91
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG-- 67
PP R ++ V+ G G P PV+++ ++G + + + QE G
Sbjct: 103 PPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQE---GDLY 159
Query: 68 SLLRIEPVRHARDDAVYECVAENGVGDAVS 97
SLL E + D Y A N VG A S
Sbjct: 160 SLLIAEA--YPEDSGTYSVNATNSVGRATS 187
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 32.3 bits (72), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 15 LRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQ-----EFPPGGSL 69
++ +N+ G + C A G+PIP I W++ + T+ + + G S
Sbjct: 5 IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSS 64
Query: 70 LRIEPVRHARDDAVYECVAENGVG 93
L I+ V+ D Y+C A + +G
Sbjct: 65 LHIKDVK-LSDSGRYDCEAASRIG 87
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNG 48
L+ ++ + P AV GG + C P P I W K+G
Sbjct: 1 LEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDG 41
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From
Human Advanced Glycosylation End Product-Specific
Receptor
Length = 96
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNG 48
L+ ++ + P AV GG + C P P I W K+G
Sbjct: 8 LEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDG 48
>pdb|2CQV|A Chain A, Solution Structure Of The Eighth Ig-Like Domain Of Human
Myosin Light Chain Kinase
Length = 114
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
P+I P +Q V+AG + G W K K++ +S +M E GS L
Sbjct: 8 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQ--ESEHMKVENSENGSKL 65
Query: 71 RIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
I R Y + EN +G + A+ +LTV + + P
Sbjct: 66 TILAARQ-EHCGCYTLLVENKLG-SRQAQVNLTVVDKPDPP 104
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 17 PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGK 49
P +Q GG +C A G P+P IQW G+
Sbjct: 28 PLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQ 60
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 17 PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGK 49
P +Q GG +C A G P+P IQW G+
Sbjct: 28 PLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQ 60
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 30.0 bits (66), Expect = 0.30, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 18 RNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQ-----EFPPGGSLLRI 72
+N+ G + C A G+PIP I W++ + T+ + + G S L I
Sbjct: 8 KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHI 67
Query: 73 EPVRHARDDAVYECVAENGVG 93
+ V+ + D Y+C A + +G
Sbjct: 68 KDVKLS-DSGRYDCEAASRIG 87
>pdb|1PD6|A Chain A, The Nmr Structure Of Domain C2 Of Human Cardiac Myosin
Binding Protein C
Length = 104
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 36 GDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECV 87
D ++W KNG+ + + S+Y+ + + L I A DDA Y+CV
Sbjct: 41 ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRT-LTISQCSLA-DDAAYQCV 90
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 36 GDPIPVIQWRKNGKRVSGTQSR----YMVQEF---PPGGSLLRIEPVRHARDDAVYECVA 88
G P W K+G + ++ +M F P G L+ +PV A D Y C A
Sbjct: 131 GSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLI-FDPVT-AFDSGEYYCQA 188
Query: 89 ENGVGDAVSAEAS 101
+NG G A+ +EA+
Sbjct: 189 QNGYGTAMRSEAA 201
>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|B Chain B, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|C Chain C, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|D Chain D, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|E Chain E, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|F Chain F, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
Length = 218
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 4 KVRFLDPPEITLRPRNQAVKAGGIT-SFYCIARGDPIPVIQWRKNGKRVSGTQS 56
++R L PP +L P + G+T + C A G P P + W K + ++S
Sbjct: 111 RLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRS 164
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
P ++P V G +FYC PV+ W K+ + + QS ++ + L
Sbjct: 377 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELK--QSVKYMKRYNGNDYGL 434
Query: 71 RIEPVRHARDDAVYECVAENGVG 93
I V+ D Y A+N G
Sbjct: 435 TINRVK-GDDKGEYTVRAKNSYG 456
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
P ++P V G +FYC PV+ W K+ + + QS ++ + L
Sbjct: 483 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELK--QSVKYMKRYNGNDYGL 540
Query: 71 RIEPVRHARDDAVYECVAENGVG 93
I V+ D Y A+N G
Sbjct: 541 TINRVK-GDDKGEYTVRAKNSYG 562
>pdb|1G1C|A Chain A, I1 Domain From Titin
pdb|1G1C|B Chain B, I1 Domain From Titin
Length = 99
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRY 58
++ P+I R ++Q V G F G P P +W KNG ++ + Y
Sbjct: 3 MEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIY 53
>pdb|1WWC|A Chain A, Nt3 Binding Domain Of Human Trkc Receptor
Length = 118
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 33 IARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG----GSLLRIEPVRHARDDAVYECVA 88
+ RG+P P + W NG+ + ++ + V+ + G G LL +P + ++ Y +A
Sbjct: 28 VVRGNPPPTLHWLHNGQPLRESKIIH-VEYYQEGEISEGCLLFNKPTHY--NNGNYTLIA 84
Query: 89 ENGVGDA 95
+N +G A
Sbjct: 85 KNPLGTA 91
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 12 EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR 71
++T+ + G F C A G+P + + G+++ TQ R +VQ+ G R
Sbjct: 4 QVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQ-RVVVQK---EGVRSR 59
Query: 72 IEPVRHARDDA-VYECVAENGVGDAVSAEASLTVYE 106
+ +DA +Y C A + G A L +Y+
Sbjct: 60 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ 95
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain
Of Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 28.5 bits (62), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
P +P+++ V G C P P + W++N + V R + + G L
Sbjct: 16 PMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTL 75
Query: 71 RIEPVRHARDDAVYECVAENGVG 93
I+ V + +D Y A N G
Sbjct: 76 LIKDV-NKKDAGWYTVSAVNEAG 97
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 21 AVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG-GSLLRIEPVRHAR 79
++ G + C GDP P + W KN K ++ Q+ + +F G + I V A
Sbjct: 128 TIQEGKALNLTCNVWGDPPPEVSWLKNEKALA--QTDHCNLKFEAGRTAYFTINGVSTA- 184
Query: 80 DDAVYECVAENGVGDAVS 97
D Y V +N G S
Sbjct: 185 DSGKYGLVVKNKYGSETS 202
>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit)
Length = 93
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 12 EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR 71
++T+ + G F C A G+P + + G+++ TQ R +VQ+ G R
Sbjct: 2 QVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQ-RVVVQK---EGVRSR 57
Query: 72 IEPVRHARDDA-VYECVAENGVGDAVSAEASLTVYE 106
+ +DA +Y C A + G A L +Y+
Sbjct: 58 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ 93
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 31/88 (35%), Gaps = 1/88 (1%)
Query: 17 PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVR 76
P V G C G P IQW K+G V Y+ L ++ V
Sbjct: 9 PVKLTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVE 68
Query: 77 HARDDAVYECVAENGVGDAVSAEASLTV 104
+ D Y C E+G +S LTV
Sbjct: 69 RS-DAGRYWCQVEDGGETEISQPVWLTV 95
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 15/103 (14%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P T+ P N + ++G + C A +P W NG TQ ++
Sbjct: 203 PDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQELFI---------- 252
Query: 70 LRIEPVRHARDDAVYECVAENG-VGDAVSAEASLTVYEGEEKP 111
P + Y C A N G + ++TVY KP
Sbjct: 253 ----PNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKP 291
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 17 PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG-GSLLRIEPV 75
P ++ G + C GDP P + W KN K ++ + +F G + I V
Sbjct: 229 PDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNL--KFEAGRTAYFTINGV 286
Query: 76 RHARDDAVYECVAENGVGDAVS 97
A D Y V +N G S
Sbjct: 287 STA-DSGKYGLVVKNKYGSETS 307
>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
pdb|3GMT|B Chain B, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
Length = 230
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 8/91 (8%)
Query: 21 AVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARD 80
A K G+ Y + P I R +G+R R +F P P +D
Sbjct: 103 AXKEAGVAIDYVLEIDVPFSEIIERXSGRRTHPASGRTYHVKFNP--------PKVEGKD 154
Query: 81 DAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
D E + + + + L VYE + KP
Sbjct: 155 DVTGEPLVQRDDDKEETVKKRLDVYEAQTKP 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,639,199
Number of Sequences: 62578
Number of extensions: 143700
Number of successful extensions: 525
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 323
Number of HSP's gapped (non-prelim): 175
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)