Query psy2442
Match_columns 111
No_of_seqs 102 out of 2146
Neff 12.0
Searched_HMMs 46136
Date Sat Aug 17 01:01:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2442.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2442hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05762 Ig8_MLCK Eighth immuno 99.9 5.7E-20 1.2E-24 91.5 13.6 97 11-111 1-97 (98)
2 cd05735 Ig8_DSCAM Eight immuno 99.8 3.8E-17 8.3E-22 79.9 12.6 85 25-111 1-88 (88)
3 cd05851 Ig3_Contactin-1 Third 99.8 5.7E-17 1.2E-21 79.3 11.6 87 10-104 1-87 (88)
4 cd05894 Ig_C5_MyBP-C C5 immuno 99.8 2E-16 4.2E-21 77.0 12.3 82 19-103 4-85 (86)
5 cd05747 Ig5_Titin_like M5, fif 99.8 1.9E-16 4.2E-21 78.1 12.4 90 9-102 2-91 (92)
6 cd05737 Ig_Myomesin_like_C C-t 99.8 1.4E-16 3E-21 78.6 11.8 84 17-103 8-91 (92)
7 cd05730 Ig3_NCAM-1_like Third 99.7 7.4E-16 1.6E-20 76.4 12.1 82 19-105 12-93 (95)
8 cd05892 Ig_Myotilin_C C-termin 99.7 6E-16 1.3E-20 73.4 10.6 74 28-103 1-74 (75)
9 cd05865 Ig1_NCAM-1 First immun 99.7 1.4E-15 3E-20 75.4 12.2 88 15-104 5-95 (96)
10 PF07679 I-set: Immunoglobulin 99.7 1.2E-15 2.6E-20 74.9 11.3 90 11-104 1-90 (90)
11 cd05891 Ig_M-protein_C C-termi 99.7 2.5E-15 5.4E-20 74.0 11.8 85 16-103 7-91 (92)
12 cd05740 Ig_CEACAM_D4 Fourth im 99.7 2.3E-15 5E-20 74.0 11.5 82 16-104 9-90 (91)
13 cd04968 Ig3_Contactin_like Thi 99.7 4.8E-15 1E-19 72.5 12.2 86 11-104 2-87 (88)
14 cd05745 Ig3_Peroxidasin Third 99.7 9.3E-16 2E-20 72.7 9.3 73 24-103 1-73 (74)
15 cd05869 Ig5_NCAM-1 Fifth immun 99.7 6E-15 1.3E-19 73.4 12.6 91 10-103 2-96 (97)
16 cd05893 Ig_Palladin_C C-termin 99.7 1.7E-15 3.6E-20 71.9 9.9 74 28-103 1-74 (75)
17 cd05728 Ig4_Contactin-2-like F 99.7 1.6E-15 3.6E-20 73.7 10.1 81 15-103 4-84 (85)
18 cd05867 Ig4_L1-CAM_like Fourth 99.7 3.5E-15 7.5E-20 71.1 10.9 73 25-104 1-75 (76)
19 cd05852 Ig5_Contactin-1 Fifth 99.7 1.5E-15 3.3E-20 71.7 9.4 72 25-103 1-72 (73)
20 cd05724 Ig2_Robo Second immuno 99.7 3.4E-15 7.4E-20 72.7 10.9 81 17-102 3-84 (86)
21 cd05744 Ig_Myotilin_C_like Imm 99.7 4.2E-15 9.2E-20 70.6 10.7 74 28-103 1-74 (75)
22 cd05773 Ig8_hNephrin_like Eigh 99.7 1.2E-14 2.6E-19 73.7 12.8 100 8-109 2-109 (109)
23 cd04975 Ig4_SCFR_like Fourth i 99.7 5.8E-15 1.3E-19 73.7 11.4 86 18-105 11-100 (101)
24 cd05868 Ig4_NrCAM Fourth immun 99.7 3.8E-15 8.2E-20 71.0 10.3 75 25-104 1-75 (76)
25 cd05870 Ig5_NCAM-2 Fifth immun 99.7 9.9E-15 2.2E-19 72.7 12.0 90 10-103 2-97 (98)
26 cd07693 Ig1_Robo First immunog 99.7 1.4E-14 3.1E-19 72.2 12.4 93 10-104 1-99 (100)
27 cd04972 Ig_TrkABC_d4 Fourth do 99.7 1.5E-14 3.3E-19 71.0 12.0 84 16-103 6-89 (90)
28 cd05866 Ig1_NCAM-2 First immun 99.7 1.3E-14 2.8E-19 71.3 11.6 86 15-104 5-91 (92)
29 cd05849 Ig1_Contactin-1 First 99.7 1.2E-14 2.5E-19 71.7 11.1 86 11-102 2-91 (93)
30 cd05848 Ig1_Contactin-5 First 99.7 2.1E-14 4.6E-19 71.0 11.9 85 11-101 2-91 (94)
31 cd05857 Ig2_FGFR Second immuno 99.7 2E-14 4.4E-19 69.8 11.2 79 20-103 4-84 (85)
32 cd05748 Ig_Titin_like Immunogl 99.6 2.4E-14 5.3E-19 67.8 11.1 73 27-103 1-73 (74)
33 cd05732 Ig5_NCAM-1_like Fifth 99.6 2.9E-14 6.2E-19 70.8 11.6 90 10-103 2-95 (96)
34 cd04978 Ig4_L1-NrCAM_like Four 99.6 1.8E-14 3.9E-19 68.6 10.4 75 25-104 1-75 (76)
35 cd05760 Ig2_PTK7 Second immuno 99.6 2.1E-14 4.6E-19 68.5 10.4 74 28-105 1-75 (77)
36 cd04969 Ig5_Contactin_like Fif 99.6 1.4E-14 3E-19 68.5 9.6 72 25-103 1-72 (73)
37 cd05854 Ig6_Contactin-2 Sixth 99.6 5.1E-14 1.1E-18 68.4 11.6 81 26-108 1-85 (85)
38 cd05723 Ig4_Neogenin Fourth im 99.6 2.2E-14 4.7E-19 67.5 9.9 70 27-103 1-70 (71)
39 cd05722 Ig1_Neogenin First imm 99.6 3.5E-14 7.5E-19 70.4 11.2 85 14-103 3-94 (95)
40 cd05850 Ig1_Contactin-2 First 99.6 1.5E-13 3.2E-18 68.0 13.1 86 11-102 2-92 (94)
41 cd05863 Ig2_VEGFR-3 Second imm 99.6 3E-14 6.4E-19 66.0 9.2 65 28-104 1-65 (67)
42 cd05726 Ig4_Robo Fhird immunog 99.6 4.1E-14 8.9E-19 69.5 10.1 78 25-108 1-85 (90)
43 cd04973 Ig1_FGFR First immunog 99.6 3.8E-14 8.3E-19 68.0 9.7 76 18-102 2-77 (79)
44 cd05853 Ig6_Contactin-4 Sixth 99.6 5.8E-14 1.3E-18 67.9 10.2 81 26-108 1-85 (85)
45 cd04977 Ig1_NCAM-1_like First 99.6 1.2E-13 2.5E-18 68.1 11.2 85 15-102 5-90 (92)
46 cd05743 Ig_Perlecan_D2_like Im 99.6 7.4E-14 1.6E-18 66.8 10.2 68 25-95 1-68 (78)
47 cd05859 Ig4_PDGFR-alpha Fourth 99.6 8.5E-14 1.9E-18 69.6 10.7 85 19-105 12-100 (101)
48 cd04970 Ig6_Contactin_like Six 99.6 1.7E-13 3.6E-18 66.6 11.2 81 26-108 1-85 (85)
49 cd04976 Ig2_VEGFR Second immun 99.6 7E-14 1.5E-18 65.7 9.4 68 29-104 2-69 (71)
50 cd05738 Ig2_RPTP_IIa_LAR_like 99.6 1E-13 2.2E-18 65.7 9.8 72 28-104 1-73 (74)
51 cd05746 Ig4_Peroxidasin Fourth 99.6 4.2E-14 9.1E-19 66.1 8.3 68 28-102 1-68 (69)
52 cd05856 Ig2_FGFRL1-like Second 99.6 6.1E-14 1.3E-18 67.6 9.2 78 20-103 4-81 (82)
53 cd05876 Ig3_L1-CAM Third immun 99.6 5.8E-14 1.3E-18 66.0 8.7 70 28-104 1-70 (71)
54 cd05749 Ig2_Tyro3_like Second 99.6 1.6E-13 3.4E-18 66.0 10.1 74 15-99 3-77 (81)
55 cd05764 Ig_2 Subgroup of the i 99.6 1E-13 2.2E-18 65.7 9.4 72 25-103 1-73 (74)
56 KOG4194|consensus 99.6 2.7E-14 5.8E-19 88.8 9.1 103 2-109 604-708 (873)
57 cd05763 Ig_1 Subgroup of the i 99.6 1.5E-13 3.3E-18 65.3 9.1 72 28-104 1-74 (75)
58 cd05758 Ig5_KIRREL3-like Fifth 99.6 7.9E-13 1.7E-17 65.9 12.0 90 10-102 2-97 (98)
59 cd05725 Ig3_Robo Third immunog 99.6 1.4E-13 3E-18 64.4 8.7 68 28-103 1-68 (69)
60 cd05864 Ig2_VEGFR-2 Second imm 99.5 3.5E-13 7.5E-18 63.1 9.0 65 29-102 2-66 (70)
61 cd05731 Ig3_L1-CAM_like Third 99.5 3.5E-13 7.7E-18 63.3 8.8 70 28-104 1-70 (71)
62 cd04971 Ig_TrKABC_d5 Fifth dom 99.5 1.2E-12 2.6E-17 63.0 10.3 73 29-104 2-80 (81)
63 cd05739 Ig3_RPTP_IIa_LAR_like 99.5 1.1E-12 2.3E-17 61.3 9.8 67 25-101 1-67 (69)
64 cd05756 Ig1_IL1R_like First im 99.5 5.5E-13 1.2E-17 65.9 8.7 78 19-103 8-93 (94)
65 cd07702 Ig2_VEGFR-1 Second imm 99.5 9.3E-13 2E-17 61.8 9.0 60 29-94 2-61 (72)
66 cd05736 Ig2_Follistatin_like S 99.5 2.1E-12 4.6E-17 61.4 10.5 72 29-105 2-74 (76)
67 cd05855 Ig_TrkB_d5 Fifth domai 99.5 1.4E-12 3E-17 62.3 9.7 71 30-103 3-77 (79)
68 cd05752 Ig1_FcgammaR_like Frst 99.5 8E-13 1.7E-17 63.1 8.3 67 11-91 1-68 (78)
69 cd04974 Ig3_FGFR Third immunog 99.5 1.9E-12 4E-17 63.6 9.6 78 25-104 1-89 (90)
70 cd05874 Ig6_NrCAM Sixth immuno 99.5 2.7E-12 5.8E-17 61.2 9.7 71 28-101 1-75 (77)
71 KOG3513|consensus 99.5 2.2E-12 4.7E-17 84.5 11.8 98 3-107 324-423 (1051)
72 cd05765 Ig_3 Subgroup of the i 99.5 2.1E-12 4.5E-17 62.1 9.0 74 25-104 1-81 (81)
73 cd04979 Ig_Semaphorin_C Immuno 99.5 3.5E-12 7.5E-17 62.5 9.9 82 17-105 3-87 (89)
74 cd04967 Ig1_Contactin First Ig 99.5 6.2E-12 1.3E-16 61.8 10.7 79 11-95 2-85 (91)
75 cd05898 Ig5_KIRREL3 Fifth immu 99.5 1.4E-11 3.1E-16 61.1 11.9 90 10-102 2-97 (98)
76 cd05734 Ig7_DSCAM Seventh immu 99.5 2.1E-12 4.6E-17 61.9 8.7 71 28-103 1-78 (79)
77 cd05729 Ig2_FGFR_like Second i 99.5 9.3E-12 2E-16 60.3 11.1 81 20-103 4-84 (85)
78 cd05882 Ig1_Necl-1 First (N-te 99.5 7.5E-12 1.6E-16 61.9 10.3 72 18-90 5-83 (95)
79 cd05875 Ig6_hNeurofascin_like 99.5 7.7E-12 1.7E-16 59.6 10.0 70 28-100 1-74 (77)
80 cd05733 Ig6_L1-CAM_like Sixth 99.5 3.6E-12 7.8E-17 60.8 8.9 69 28-100 1-74 (77)
81 cd05858 Ig3_FGFR-2 Third immun 99.5 7.1E-12 1.5E-16 61.5 10.2 78 25-104 1-89 (90)
82 cd05861 Ig1_PDGFR-alphabeta Fr 99.4 1.1E-11 2.3E-16 60.1 10.3 80 25-105 1-83 (84)
83 cd05750 Ig_Pro_neuregulin Immu 99.4 5.2E-12 1.1E-16 59.9 9.1 66 28-95 1-69 (75)
84 cd05873 Ig_Sema4D_like Immunog 99.4 1.1E-11 2.5E-16 60.1 9.7 69 17-92 3-71 (87)
85 cd05754 Ig3_Perlecan_like Thir 99.4 7.8E-12 1.7E-16 60.7 9.2 76 15-100 6-82 (85)
86 cd05753 Ig2_FcgammaR_like Seco 99.4 1.1E-11 2.3E-16 59.9 8.3 73 20-103 9-82 (83)
87 cd07701 Ig1_Necl-3 First (N-te 99.4 5.5E-11 1.2E-15 58.9 10.6 73 18-91 5-84 (95)
88 cd05742 Ig1_VEGFR_like First i 99.4 1.9E-11 4.2E-16 59.2 8.0 78 25-104 1-83 (84)
89 KOG3513|consensus 99.4 2.3E-11 5E-16 79.8 10.4 99 2-107 415-516 (1051)
90 cd05895 Ig_Pro_neuregulin-1 Im 99.3 7.8E-11 1.7E-15 56.0 9.2 66 28-95 1-70 (76)
91 cd05717 Ig1_Necl-1-3_like Firs 99.3 2.7E-10 5.9E-15 56.4 10.2 74 18-92 5-85 (95)
92 smart00408 IGc2 Immunoglobulin 99.3 1.6E-10 3.4E-15 52.5 8.6 63 24-93 1-63 (63)
93 cd05845 Ig2_L1-CAM_like Second 99.3 4.9E-11 1.1E-15 58.7 6.6 72 17-93 10-83 (95)
94 cd05727 Ig2_Contactin-2-like S 99.2 1.2E-10 2.7E-15 57.4 7.4 72 18-93 11-84 (96)
95 KOG4221|consensus 99.2 4.1E-10 9E-15 74.8 11.4 101 3-109 224-330 (1381)
96 PF13895 Ig_2: Immunoglobulin 99.2 4.9E-10 1.1E-14 53.5 9.2 79 11-104 2-80 (80)
97 cd05881 Ig1_Necl-2 First (N-te 99.2 1.6E-09 3.4E-14 53.5 10.9 73 18-91 5-84 (95)
98 cd05757 Ig2_IL1R_like Second i 99.2 5.6E-10 1.2E-14 54.9 9.1 73 20-100 5-82 (92)
99 smart00409 IG Immunoglobulin. 99.2 7.3E-09 1.6E-13 49.6 12.4 82 19-104 3-85 (86)
100 smart00410 IG_like Immunoglobu 99.2 7.3E-09 1.6E-13 49.6 12.4 82 19-104 3-85 (86)
101 cd05871 Ig_Semaphorin_classIII 99.2 1.9E-09 4.2E-14 52.9 9.9 79 20-106 6-90 (91)
102 PHA02826 IL-1 receptor-like pr 99.1 5.4E-09 1.2E-13 59.4 11.6 68 20-92 139-211 (227)
103 KOG4222|consensus 99.1 1.5E-10 3.3E-15 76.4 5.9 101 2-109 217-317 (1281)
104 cd07690 Ig1_CD4 First immunogl 99.1 1.1E-09 2.5E-14 54.0 7.7 74 20-94 2-90 (94)
105 cd05862 Ig1_VEGFR First immuno 99.1 2.9E-09 6.3E-14 51.8 8.7 79 25-105 1-85 (86)
106 PF00047 ig: Immunoglobulin do 99.1 4.4E-10 9.6E-15 51.6 5.1 62 25-88 1-64 (64)
107 KOG4194|consensus 99.1 1.9E-09 4.1E-14 67.9 8.1 96 2-103 698-794 (873)
108 cd05899 IgV_TCR_beta Immunoglo 99.0 1E-08 2.3E-13 52.0 9.2 75 15-91 3-94 (110)
109 cd05897 Ig2_IL1R2_like Second 99.0 8.7E-09 1.9E-13 50.9 8.4 70 21-94 6-80 (95)
110 cd05860 Ig4_SCFR Fourth immuno 99.0 6.8E-08 1.5E-12 48.0 11.0 84 19-104 12-99 (101)
111 PHA02785 IL-beta-binding prote 99.0 7.5E-08 1.6E-12 57.6 13.1 79 15-94 225-317 (326)
112 cd04983 IgV_TCR_alpha_like Imm 99.0 1.8E-08 4E-13 51.0 9.0 76 15-91 3-92 (109)
113 cd05896 Ig1_IL1RAPL-1_like Fir 99.0 1.9E-08 4.2E-13 50.1 8.4 78 19-103 9-103 (104)
114 cd04980 IgV_L_kappa Immunoglob 99.0 3.8E-08 8.3E-13 49.6 9.4 76 14-91 4-93 (106)
115 cd05751 Ig1_LILRB1_like First 98.9 3.5E-08 7.5E-13 48.5 8.3 73 11-91 3-75 (91)
116 cd05872 Ig_Sema4B_like Immunog 98.9 9.8E-08 2.1E-12 46.2 9.1 64 18-89 4-67 (85)
117 cd05885 Ig2_Necl-4 Second immu 98.9 9E-08 2E-12 45.8 8.5 65 28-94 2-68 (80)
118 cd05877 Ig_LP_like Immunoglobu 98.9 2.8E-07 6E-12 46.5 10.8 80 24-105 1-103 (106)
119 cd04982 IgV_TCR_gamma Immunogl 98.8 7.3E-08 1.6E-12 49.4 8.0 75 15-90 3-98 (116)
120 PF13927 Ig_3: Immunoglobulin 98.8 2E-08 4.3E-13 47.2 5.4 73 11-90 2-75 (75)
121 cd05741 Ig_CEACAM_D1_like Firs 98.8 1E-07 2.2E-12 46.8 8.0 73 25-102 1-90 (92)
122 cd05774 Ig_CEACAM_D1 First imm 98.8 3.4E-07 7.3E-12 46.1 9.6 79 19-102 7-103 (105)
123 PHA02785 IL-beta-binding prote 98.8 1.2E-07 2.6E-12 56.7 9.3 76 21-105 37-117 (326)
124 cd05900 Ig_Aggrecan Immunoglob 98.8 4.6E-07 1E-11 46.2 10.1 80 24-105 1-109 (112)
125 PHA02826 IL-1 receptor-like pr 98.8 1.9E-07 4.1E-12 53.2 9.4 87 18-106 30-134 (227)
126 KOG4222|consensus 98.8 3.2E-08 7E-13 65.9 6.9 93 12-109 133-227 (1281)
127 cd05759 Ig2_KIRREL3-like Secon 98.8 3.7E-07 8.1E-12 43.9 9.0 63 28-92 2-69 (82)
128 cd04984 IgV_L_lambda Immunoglo 98.8 2.6E-07 5.7E-12 45.9 8.7 68 21-90 2-84 (98)
129 cd07694 Ig2_CD4 Second immunog 98.8 4.2E-07 9.2E-12 43.8 8.6 74 21-104 10-85 (88)
130 cd05714 Ig_CSPGs_LP Immunoglob 98.8 1.3E-06 2.7E-11 44.1 10.7 80 24-105 1-103 (106)
131 KOG4221|consensus 98.7 5.3E-07 1.1E-11 60.9 10.9 85 3-93 133-217 (1381)
132 cd05775 Ig_SLAM-CD84_like_N N- 98.7 2E-07 4.4E-12 46.3 7.2 78 23-104 2-96 (97)
133 cd05718 Ig1_PVR_like First imm 98.7 1.3E-06 2.9E-11 43.3 10.0 77 26-104 1-97 (98)
134 cd00099 IgV Immunoglobulin var 98.7 3.3E-07 7.1E-12 46.0 7.8 71 21-92 2-90 (105)
135 cd05883 Ig2_Necl-2 Second immu 98.7 9.5E-07 2.1E-11 42.4 8.6 78 28-106 2-81 (82)
136 cd05879 Ig_P0 Immunoglobulin ( 98.7 3.9E-06 8.4E-11 43.1 11.3 75 18-93 6-104 (116)
137 cd05771 IgC_Tapasin_R Tapasin- 98.6 2.8E-06 6E-11 44.9 10.5 48 3-50 31-80 (139)
138 cd07706 IgV_TCR_delta Immunogl 98.6 1E-06 2.2E-11 45.2 8.5 76 14-90 3-93 (116)
139 cd05711 Ig_FcalphaRI Immunoglo 98.6 1.3E-06 2.8E-11 43.2 7.9 74 11-89 2-75 (94)
140 cd07700 IgV_CD8_beta Immunoglo 98.6 2.9E-06 6.2E-11 42.9 9.0 69 21-90 2-93 (107)
141 cd05878 Ig_Aggrecan_like Immun 98.6 8.3E-06 1.8E-10 41.5 10.6 80 24-105 1-107 (110)
142 cd05846 Ig1_MRC-OX-2_like Firs 98.6 4.6E-06 9.9E-11 41.4 9.4 78 25-104 1-96 (97)
143 cd05715 Ig_P0-like Immunoglobu 98.6 1E-05 2.2E-10 41.5 10.8 76 17-93 5-104 (116)
144 cd05713 Ig_MOG_like Immunoglob 98.5 7.6E-06 1.7E-10 40.8 9.9 78 25-104 1-99 (100)
145 PF07686 V-set: Immunoglobulin 98.5 5.1E-06 1.1E-10 42.0 8.9 76 15-91 6-101 (114)
146 cd05712 Ig_Siglec_N Immunoglob 98.5 7.7E-06 1.7E-10 42.2 8.8 75 16-91 5-102 (119)
147 cd05716 Ig_pIgR Immunoglobulin 98.4 9.3E-06 2E-10 40.3 8.6 71 20-91 2-86 (98)
148 cd05720 Ig_CD8_alpha Immunoglo 98.4 4E-06 8.7E-11 42.2 7.0 68 21-90 2-90 (104)
149 cd05755 Ig2_ICAM-1_like Second 98.4 1.3E-05 2.7E-10 40.1 8.2 75 16-94 7-87 (100)
150 cd05880 Ig_EVA1 Immunoglobulin 98.4 2.1E-05 4.5E-10 40.4 9.1 76 17-93 5-103 (115)
151 cd00098 IgC Immunoglobulin Con 98.3 6.4E-06 1.4E-10 40.6 6.5 70 23-93 11-86 (95)
152 cd07698 IgC_MHC_I_alpha3 Class 98.3 4.7E-05 1E-09 37.5 9.3 67 25-92 14-83 (93)
153 cd05887 Ig1_Nectin-3_like Firs 98.3 6.6E-05 1.4E-09 37.3 10.1 77 26-104 1-95 (96)
154 PHA02987 Ig domain OX-2-like p 98.2 8.9E-05 1.9E-09 40.9 10.1 85 20-105 25-122 (189)
155 cd04981 IgV_H Immunoglobulin ( 98.2 4.1E-05 8.9E-10 39.4 8.2 73 17-90 4-97 (117)
156 cd05888 Ig1_Nectin-4_like Frst 98.2 9.1E-05 2E-09 37.0 10.2 36 67-104 63-99 (100)
157 cd05761 Ig2_Necl-1-4_like Seco 98.2 7.7E-05 1.7E-09 35.9 8.5 63 28-93 2-69 (82)
158 cd05902 Ig_Neurocan Immunoglob 98.2 0.00012 2.6E-09 37.3 9.6 79 25-105 2-107 (110)
159 cd05886 Ig1_Nectin-1_like Firs 98.2 0.00012 2.6E-09 36.5 10.6 36 67-104 62-98 (99)
160 cd05901 Ig_Versican Immunoglob 98.1 0.00021 4.5E-09 36.8 11.1 38 66-105 77-114 (117)
161 cd05770 IgC_beta2m Class I maj 98.1 0.00017 3.7E-09 35.6 9.4 67 23-91 13-82 (93)
162 cd07705 Ig2_Necl-1 Second immu 98.0 0.00022 4.7E-09 34.4 9.5 63 28-93 2-70 (83)
163 cd00096 Ig Immunoglobulin doma 98.0 8.9E-05 1.9E-09 33.5 6.6 63 29-92 2-66 (74)
164 PF08205 C2-set_2: CD80-like C 98.0 0.0002 4.3E-09 34.8 7.5 68 25-93 14-85 (89)
165 cd05884 Ig2_Necl-3 Second immu 97.9 0.00027 5.7E-09 34.2 7.4 63 28-92 2-69 (83)
166 smart00406 IGv Immunoglobulin 97.9 0.00015 3.2E-09 34.3 6.6 59 28-87 2-80 (81)
167 cd05766 IgC_MHC_II_beta Class 97.9 0.00049 1.1E-08 34.0 9.6 69 23-92 12-83 (94)
168 cd05772 IgC_SIRP Signal-regula 97.9 0.00058 1.2E-08 34.9 8.6 68 22-92 18-92 (111)
169 KOG3515|consensus 97.8 5.3E-05 1.2E-09 49.7 4.2 90 11-108 8-98 (741)
170 PHA03376 BARF1; Provisional 97.7 0.0018 3.9E-08 36.1 9.5 71 19-91 20-109 (221)
171 cd05767 IgC_MHC_II_alpha Class 97.7 0.0011 2.3E-08 32.9 9.6 68 24-92 14-84 (94)
172 cd05768 IgC_CH4 CH4 domain (fo 97.7 0.00094 2E-08 33.5 7.1 32 21-52 12-45 (102)
173 cd05771 IgC_Tapasin_R Tapasin- 97.6 0.00021 4.6E-09 37.8 4.8 38 70-109 3-40 (139)
174 cd07699 IgC_L Immunoglobulin C 97.6 0.00083 1.8E-08 33.6 6.5 32 21-52 13-46 (100)
175 PF07654 C1-set: Immunoglobuli 97.6 0.0012 2.7E-08 31.7 6.9 65 24-92 7-77 (83)
176 cd07697 IgC_TCR_gamma T cell r 97.6 0.0017 3.8E-08 32.2 7.9 32 21-52 12-45 (96)
177 smart00407 IGc1 Immunoglobulin 97.6 0.0015 3.3E-08 30.8 8.5 64 28-92 2-71 (75)
178 cd05889 Ig1_DNAM-1_like First 97.6 0.0021 4.5E-08 32.0 10.5 33 67-101 59-92 (96)
179 cd05847 IgC_CH2_IgE CH2 domain 97.5 0.0025 5.5E-08 31.5 8.3 28 24-51 13-42 (94)
180 cd05721 IgV_CTLA-4 Immunoglobu 97.5 0.0033 7.2E-08 32.2 8.8 71 19-90 7-95 (115)
181 PHA02633 hypothetical protein; 97.4 0.0017 3.7E-08 29.4 5.2 36 70-107 20-55 (63)
182 cd07696 IgC_CH3 CH3 domain (th 97.4 0.0014 2.9E-08 32.6 5.5 31 20-50 9-42 (96)
183 PF11465 Receptor_2B4: Natural 97.2 0.0025 5.4E-08 32.1 5.3 46 56-105 62-107 (108)
184 cd07692 Ig_CD3_epsilon Immunog 97.2 0.0033 7.1E-08 28.8 5.1 52 22-90 4-55 (65)
185 cd05769 IgC_TCR_beta T cell re 97.2 0.0085 1.8E-07 30.8 7.0 32 21-52 14-47 (115)
186 cd04985 IgC_CH1 CH1 domain (fi 97.0 0.012 2.7E-07 29.1 6.9 27 24-50 15-43 (95)
187 cd07691 Ig_CD3_gamma_delta Imm 96.9 0.011 2.4E-07 27.4 5.3 49 25-90 6-54 (69)
188 cd07703 Ig2_Nectin-2_like Seco 96.7 0.022 4.9E-07 28.3 8.2 62 27-92 17-82 (95)
189 cd05719 Ig2_PVR_like Second im 96.6 0.026 5.7E-07 28.0 8.7 64 25-92 15-82 (95)
190 cd04986 IgC_CH2 CH2 domain (se 96.6 0.026 5.5E-07 28.3 5.8 36 15-50 9-47 (99)
191 PF07354 Sp38: Zona-pellucida- 96.1 0.023 5E-07 33.3 4.7 50 38-92 11-60 (271)
192 cd07704 Ig2_Nectin-3-4_like Se 96.0 0.077 1.7E-06 26.5 6.7 66 20-92 11-84 (97)
193 KOG1480|consensus 95.9 0.0041 8.8E-08 41.5 1.4 83 15-103 134-217 (909)
194 PF03921 ICAM_N: Intercellular 94.9 0.21 4.5E-06 24.7 8.5 85 13-109 6-90 (91)
195 cd07689 Ig2_VCAM-1 Second immu 93.2 0.57 1.2E-05 23.6 7.1 67 21-91 11-85 (99)
196 PF08204 V-set_CD47: CD47 immu 93.1 0.29 6.2E-06 25.9 3.8 80 22-104 24-119 (130)
197 KOG4597|consensus 91.1 0.84 1.8E-05 29.6 4.7 79 20-104 206-291 (560)
198 PHA03042 CD47-like protein; Pr 90.3 2.7 5.8E-05 25.3 7.7 61 23-93 29-94 (286)
199 PHA03269 envelope glycoprotein 90.3 3.7 8E-05 27.0 8.4 50 2-53 321-373 (566)
200 PHA03052 Hypothetical protein; 90.0 1.2 2.5E-05 20.8 4.3 34 18-51 5-41 (69)
201 PHA03270 envelope glycoprotein 89.9 3.8 8.1E-05 26.4 7.6 49 2-52 213-264 (466)
202 PHA02982 hypothetical protein; 89.4 2.8 6.1E-05 24.3 6.0 74 19-93 33-124 (251)
203 PHA03273 envelope glycoprotein 89.0 2.1 4.5E-05 27.7 5.2 48 3-52 230-280 (486)
204 KOG3515|consensus 86.4 2.2 4.7E-05 29.4 4.4 78 23-105 414-493 (741)
205 PHA02865 MHC-like TNF binding 86.2 6.2 0.00013 24.7 7.9 21 27-47 216-238 (338)
206 PF05790 C2-set: Immunoglobuli 84.6 3.2 6.9E-05 20.0 7.5 19 70-89 45-63 (80)
207 PHA03376 BARF1; Provisional 84.1 2.1 4.5E-05 24.5 3.1 25 25-49 139-163 (221)
208 PF06328 Lep_receptor_Ig: Ig-l 78.5 6.4 0.00014 19.4 6.9 64 19-87 12-80 (89)
209 PHA03189 UL14 tegument protein 71.3 22 0.00048 22.1 8.5 23 79-101 143-165 (348)
210 PHA03283 envelope glycoprotein 66.2 37 0.00081 22.9 5.4 37 68-106 134-170 (542)
211 COG5475 Uncharacterized small 63.6 11 0.00023 16.9 2.0 15 80-94 27-41 (60)
212 PF02480 Herpes_gE: Alphaherpe 54.2 4.2 9.1E-05 26.4 0.0 36 70-106 91-126 (439)
213 PHA03240 envelope glycoprotein 44.9 66 0.0014 19.1 4.5 27 20-46 33-59 (258)
214 PHA03286 envelope glycoprotein 39.4 1.2E+02 0.0025 20.4 6.0 37 68-105 127-163 (492)
215 PHA03282 envelope glycoprotein 37.0 1.3E+02 0.0029 20.3 5.1 22 68-90 124-145 (540)
216 PHA02914 Immunoglobulin-like d 28.4 1.8E+02 0.004 19.3 9.8 37 68-105 81-117 (500)
217 PHA03271 envelope glycoprotein 27.8 1.9E+02 0.0041 19.3 7.8 33 20-52 255-290 (490)
218 KOG0613|consensus 26.4 1.1E+02 0.0024 23.3 3.2 75 20-95 344-419 (1205)
219 PHA00008 J DNA packaging prote 24.4 54 0.0012 11.9 1.2 11 41-51 15-25 (26)
220 PF15096 G6B: G6B family 24.1 41 0.00089 19.3 0.8 18 21-38 7-24 (224)
221 cd05890 Ig2_Nectin-1_like Seco 23.3 1.2E+02 0.0026 15.5 6.5 21 27-47 22-43 (98)
222 PF11781 RRN7: RNA polymerase 21.7 54 0.0012 13.1 0.7 9 79-87 21-29 (36)
223 PF13220 DUF4028: Protein of u 20.1 1.1E+02 0.0023 13.6 1.7 14 80-93 9-22 (65)
No 1
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.87 E-value=5.7e-20 Score=91.49 Aligned_cols=97 Identities=24% Similarity=0.390 Sum_probs=82.0
Q ss_pred CeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeee
Q psy2442 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAEN 90 (111)
Q Consensus 11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~ 90 (111)
|.+...+..+.+..|+.+.|.|.+.|.|.+.+.|++++..+... .++...... ....|.|..+.+ .|.|.|.|.+.|
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~-~~~~~~~~~-~~s~L~I~~~~~-~D~G~Ytc~a~N 77 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEG-EGIKIENTE-NSSKLTITEGQQ-EHCGCYTLEVEN 77 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCC-CcEEEEecC-CeeEEEECCCCh-hhCEEEEEEEEc
Confidence 45666778889999999999999999999999999999988643 455554333 445699999998 999999999999
Q ss_pred CCCceEeeEEEEEEecCCCCC
Q psy2442 91 GVGDAVSAEASLTVYEGEEKP 111 (111)
Q Consensus 91 ~~~~~~~~~~~l~~~~~~~~p 111 (111)
..|.. ...+.|.|.+.|.+|
T Consensus 78 ~~G~~-~~~~~l~V~~~P~pP 97 (98)
T cd05762 78 KLGSR-QAQVNLTVVDKPDPP 97 (98)
T ss_pred CCCce-eEEEEEEEecCCCCC
Confidence 99985 889999999999887
No 2
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.79 E-value=3.8e-17 Score=79.87 Aligned_cols=85 Identities=28% Similarity=0.475 Sum_probs=68.8
Q ss_pred CCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCC---CCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEE
Q psy2442 25 GGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP---PGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEAS 101 (111)
Q Consensus 25 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~ 101 (111)
|+.+.|.|.+.+.|.+.+.|++++..+.....++...... .....|.|.++.. .|+|.|.|.+.|..|.. ...+.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~-~D~G~YtC~A~N~~G~~-~~~~~ 78 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVR-EDSGFFSCHAINSYGED-RGIIQ 78 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCc-ccCEEEEEEEEcCCCcc-eEEEE
Confidence 6889999999999999999999998875443455443211 1224589999998 99999999999999985 88999
Q ss_pred EEEecCCCCC
Q psy2442 102 LTVYEGEEKP 111 (111)
Q Consensus 102 l~~~~~~~~p 111 (111)
|.|..+|.+|
T Consensus 79 L~V~~~P~~P 88 (88)
T cd05735 79 LTVQEPPDPP 88 (88)
T ss_pred EEEeCCCCCC
Confidence 9999999887
No 3
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.77 E-value=5.7e-17 Score=79.27 Aligned_cols=87 Identities=31% Similarity=0.595 Sum_probs=69.6
Q ss_pred CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE 89 (111)
Q Consensus 10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~ 89 (111)
+|.+...+.+..+..|+.+.|.|.+.|.|.|.+.|++.+..+... .++.. ....|.|.++.. .|.|.|.|.+.
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~-~~~~~-----~~~~L~I~~v~~-~D~G~Y~C~A~ 73 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPAT-AEISM-----SGAVLKIFNIQP-EDEGTYECEAE 73 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCC-CEEec-----CCCEEEECcCCh-hhCEEEEEEEE
Confidence 466777777888999999999999999999999999998766432 22221 334589999998 99999999999
Q ss_pred eCCCceEeeEEEEEE
Q psy2442 90 NGVGDAVSAEASLTV 104 (111)
Q Consensus 90 ~~~~~~~~~~~~l~~ 104 (111)
|..|.. .....|.|
T Consensus 74 N~~G~~-~~~~~l~V 87 (88)
T cd05851 74 NIKGKD-KHQARVYV 87 (88)
T ss_pred cCCCce-EEEEEEEE
Confidence 999974 66666654
No 4
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.76 E-value=2e-16 Score=77.04 Aligned_cols=82 Identities=26% Similarity=0.414 Sum_probs=66.4
Q ss_pred ceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEee
Q psy2442 19 NQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSA 98 (111)
Q Consensus 19 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~ 98 (111)
.+.+..|+.+.|.|.+.|.|.|.+.|++++..+.....++...... ....|.|..+.+ .|+|.|.|.+.|..|.. ..
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~-~~~~L~I~~~~~-~D~G~Y~c~a~N~~G~~-~~ 80 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYK-DLSSFVIEGAER-EDEGVYTITVTNPVGED-HA 80 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcC-CeEEEEECCCcc-CcCEEEEEEEEeCCCcE-EE
Confidence 4678899999999999999999999999999886543456554322 345699999998 99999999999999974 66
Q ss_pred EEEEE
Q psy2442 99 EASLT 103 (111)
Q Consensus 99 ~~~l~ 103 (111)
.+.|.
T Consensus 81 ~~~l~ 85 (86)
T cd05894 81 SLFVK 85 (86)
T ss_pred EEEEE
Confidence 66654
No 5
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.76 E-value=1.9e-16 Score=78.05 Aligned_cols=90 Identities=28% Similarity=0.512 Sum_probs=72.0
Q ss_pred CCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442 9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA 88 (111)
Q Consensus 9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~ 88 (111)
.+|.+...+....+..|+.+.|.|.+.+.|.|.+.|++++..+... .++...... ....|.+.++.. .|+|.|.|.+
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~-~~~~~~~~~-~~~~L~i~~~~~-~D~G~Y~C~a 78 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSS-QRHQITSTE-YKSTFEISKVQM-SDEGNYTVVV 78 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCC-CcEEEEEcC-CeeEEEECCCCc-ccCEeEEEEE
Confidence 3677777788889999999999999999999999999999887543 455544322 335689999998 9999999999
Q ss_pred eeCCCceEeeEEEE
Q psy2442 89 ENGVGDAVSAEASL 102 (111)
Q Consensus 89 ~~~~~~~~~~~~~l 102 (111)
.|..|.. ...+.|
T Consensus 79 ~N~~G~~-~~~~~l 91 (92)
T cd05747 79 ENSEGKQ-EAQFTL 91 (92)
T ss_pred EcCCCCE-eEEEEe
Confidence 9999874 665554
No 6
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.76 E-value=1.4e-16 Score=78.59 Aligned_cols=84 Identities=24% Similarity=0.411 Sum_probs=66.1
Q ss_pred CcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceE
Q psy2442 17 PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAV 96 (111)
Q Consensus 17 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~ 96 (111)
+..+.+.+|+++.|.|.+.+.|.|.+.|++++..+... .++......+....|.|.++.. .|+|.|.|.+.|..|..
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~-~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~- 84 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALS-DHYNVKVEQGKYASLTIKGVSS-EDSGKYGIVVKNKYGGE- 84 (92)
T ss_pred CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccC-CCEEEEEcCCCEEEEEEccCCh-hhCEEEEEEEEECCCcc-
Confidence 44567889999999999999999999999999888643 4555443221234599999998 99999999999999875
Q ss_pred eeEEEEE
Q psy2442 97 SAEASLT 103 (111)
Q Consensus 97 ~~~~~l~ 103 (111)
...+.+.
T Consensus 85 ~~~~~v~ 91 (92)
T cd05737 85 TVDVTVS 91 (92)
T ss_pred eEEEEEe
Confidence 6666554
No 7
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.73 E-value=7.4e-16 Score=76.39 Aligned_cols=82 Identities=34% Similarity=0.638 Sum_probs=65.9
Q ss_pred ceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEee
Q psy2442 19 NQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSA 98 (111)
Q Consensus 19 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~ 98 (111)
...+..|+++.|.|.+.|.|.|.+.|++++..+.....++.... ....|.|.++.. .|.|.|.|.+.|..|.. ..
T Consensus 12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~---~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~-~~ 86 (95)
T cd05730 12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNE---DGSEMTILDVDK-LDEAEYTCIAENKAGEQ-EA 86 (95)
T ss_pred ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeC---CCCEEEECCCCh-hhCEEEEEEEEcCCCeE-EE
Confidence 34678899999999999999999999999988764323443322 344599999998 99999999999999974 77
Q ss_pred EEEEEEe
Q psy2442 99 EASLTVY 105 (111)
Q Consensus 99 ~~~l~~~ 105 (111)
.+.|.|.
T Consensus 87 ~~~L~V~ 93 (95)
T cd05730 87 EIHLKVF 93 (95)
T ss_pred EEEEEEE
Confidence 7777765
No 8
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.72 E-value=6e-16 Score=73.38 Aligned_cols=74 Identities=27% Similarity=0.380 Sum_probs=57.9
Q ss_pred EEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEE
Q psy2442 28 TSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLT 103 (111)
Q Consensus 28 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~ 103 (111)
+.|.|.+.|.|.|.+.|++++..+.....++.+.........|.|.++.. .|+|.|.|.+.|..|.. .....|.
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~-~D~G~Y~C~A~N~~G~~-~~~a~L~ 74 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNK-KDAGWYTVSAVNEAGVA-TCHARLD 74 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCCh-hhCEEEEEEEEcCcCeE-EEEEEEe
Confidence 46899999999999999999998864445665544322223699999998 99999999999999975 6665554
No 9
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.72 E-value=1.4e-15 Score=75.36 Aligned_cols=88 Identities=25% Similarity=0.449 Sum_probs=65.0
Q ss_pred EcCcceeeecCCcEEEEEEEeccCC-CeEEEEE-CCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442 15 LRPRNQAVKAGGITSFYCIARGDPI-PVIQWRK-NGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGV 92 (111)
Q Consensus 15 ~~~~~~~~~~g~~~~l~c~~~~~~~-~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~ 92 (111)
..+....+..|+++.|.|.+.|.|. |.+.|++ ++..+.....++.....+.....|.|..+.. .|+|.|.|.+.|..
T Consensus 5 ~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~-~D~G~YtC~A~N~~ 83 (96)
T cd05865 5 IVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANI-DDAGIYKCVVSNED 83 (96)
T ss_pred EeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccCh-hhCEEEEEEEEcCC
Confidence 4455567889999999999999984 6999998 5655543234554443322346699999998 99999999999987
Q ss_pred -CceEeeEEEEEE
Q psy2442 93 -GDAVSAEASLTV 104 (111)
Q Consensus 93 -~~~~~~~~~l~~ 104 (111)
|.. ...+.|.+
T Consensus 84 ~g~~-~~s~~l~v 95 (96)
T cd05865 84 EGES-EATVNVKI 95 (96)
T ss_pred CCcE-EEEEEEEE
Confidence 553 66666654
No 10
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.71 E-value=1.2e-15 Score=74.86 Aligned_cols=90 Identities=37% Similarity=0.700 Sum_probs=73.1
Q ss_pred CeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeee
Q psy2442 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAEN 90 (111)
Q Consensus 11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~ 90 (111)
|.+...+..+.+..|+++.|.|.+.+.|.+.+.|++++..+... .++...... ....|.|.++.. .|.|.|.|.+.|
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~-~~~~~~~~~-~~~~L~I~~v~~-~D~G~Y~C~~~n 77 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSS-QRYQIESDG-GSSSLTIKNVTR-EDAGTYTCVASN 77 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESS-SSEEEEEET-TEEEEEESSESG-GGSEEEEEEEEE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeee-eeeeeeccc-ceeEEccCCCCh-hhCEEEEEEEEE
Confidence 45667778889999999999999999999999999999988753 555554433 456699999998 999999999999
Q ss_pred CCCceEeeEEEEEE
Q psy2442 91 GVGDAVSAEASLTV 104 (111)
Q Consensus 91 ~~~~~~~~~~~l~~ 104 (111)
..|.. ...+.|.|
T Consensus 78 ~~g~~-~~~~~l~V 90 (90)
T PF07679_consen 78 SSGEA-TASVNLTV 90 (90)
T ss_dssp TTEEE-EEEEEEEE
T ss_pred CCCEE-EEEEEEEC
Confidence 98764 66666653
No 11
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.70 E-value=2.5e-15 Score=74.05 Aligned_cols=85 Identities=21% Similarity=0.359 Sum_probs=65.5
Q ss_pred cCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCce
Q psy2442 16 RPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDA 95 (111)
Q Consensus 16 ~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~ 95 (111)
.+..+.+.+|+.+.|.|.+.+.|.|.+.|++++..+... .++...........|.|..+.. +|+|.|.|.+.|..|..
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~-~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~ 84 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELS-EHYSVKLEQGKYASLTIKGVTS-EDSGKYSINVKNKYGGE 84 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCC-CCEEEEEcCCCEEEEEECCCCh-hhCEEEEEEEEeCCCce
Confidence 344578899999999999999999999999999887543 4444332221223589999998 99999999999999874
Q ss_pred EeeEEEEE
Q psy2442 96 VSAEASLT 103 (111)
Q Consensus 96 ~~~~~~l~ 103 (111)
+..+.++
T Consensus 85 -~~~~~v~ 91 (92)
T cd05891 85 -TVDVTVS 91 (92)
T ss_pred -eeEEEEE
Confidence 6666554
No 12
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.70 E-value=2.3e-15 Score=73.96 Aligned_cols=82 Identities=26% Similarity=0.381 Sum_probs=65.4
Q ss_pred cCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCce
Q psy2442 16 RPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDA 95 (111)
Q Consensus 16 ~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~ 95 (111)
.++++.+..|+.+.|.|.+.+. .|.+.|++++..+.. .++.... ....|.|..+.. .|+|.|.|.+.|..|..
T Consensus 9 ~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~--~~~~~~~---~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~ 81 (91)
T cd05740 9 SVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVP--PRLQLSN---DNRTLTFNNVTR-SDTGHYQCEASNEVSNM 81 (91)
T ss_pred ccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCC--CCEEEeC---CCCEEEECcCCh-hhCEEEEEEEEcCCCCE
Confidence 3456688899999999999999 889999999988753 3443332 334599999998 99999999999999876
Q ss_pred EeeEEEEEE
Q psy2442 96 VSAEASLTV 104 (111)
Q Consensus 96 ~~~~~~l~~ 104 (111)
.+..+.|.|
T Consensus 82 ~S~~~~L~V 90 (91)
T cd05740 82 TSDPYILNV 90 (91)
T ss_pred EeeeEEEEe
Confidence 566776655
No 13
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.70 E-value=4.8e-15 Score=72.49 Aligned_cols=86 Identities=28% Similarity=0.567 Sum_probs=66.4
Q ss_pred CeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeee
Q psy2442 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAEN 90 (111)
Q Consensus 11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~ 90 (111)
+.+...+....+..|+.+.|.|.+.+.|.|.+.|++.+..+... .... . ....|.|.++.. .|+|.|.|.+.|
T Consensus 2 ~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~--~---~~~~L~i~~v~~-~D~G~Y~C~a~N 74 (88)
T cd04968 2 SIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSS-AEIS--M---SGAVLKIPNIQF-EDEGTYECEAEN 74 (88)
T ss_pred CcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCc-cEEE--E---eCCEEEECCCCc-ccCEEEEEEEEE
Confidence 34455667777889999999999999999999999987765432 2222 1 334599999998 999999999999
Q ss_pred CCCceEeeEEEEEE
Q psy2442 91 GVGDAVSAEASLTV 104 (111)
Q Consensus 91 ~~~~~~~~~~~l~~ 104 (111)
..|.. .....|.|
T Consensus 75 ~~G~~-~~~~~l~V 87 (88)
T cd04968 75 IKGKD-THQGRIYV 87 (88)
T ss_pred CCCcE-EEEEEEEE
Confidence 99874 66666654
No 14
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.70 E-value=9.3e-16 Score=72.73 Aligned_cols=73 Identities=41% Similarity=0.640 Sum_probs=58.3
Q ss_pred cCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEE
Q psy2442 24 AGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLT 103 (111)
Q Consensus 24 ~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~ 103 (111)
+|+.+.|.|.+.+.|.|.+.|++++..+... .++... ....|.|.++.. .|.|.|.|.+.|..|.. .....|.
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~-~~~~~~----~~~~L~I~~v~~-~D~G~Y~C~A~N~~G~~-~~~~~L~ 73 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVD-RRHLVL----SSGTLRISRVAL-HDQGQYECQAVNIVGSQ-RTVAQLT 73 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCC-CCeEEc----cCCeEEEeeCCH-HhCEEEEEEEEeCCCce-eEEEEEe
Confidence 5889999999999999999999999887543 333332 334599999998 99999999999999874 6665554
No 15
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.70 E-value=6e-15 Score=73.38 Aligned_cols=91 Identities=29% Similarity=0.499 Sum_probs=66.4
Q ss_pred CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCC----CCceEEEeCCCCCeEEEEccCCCCCCCeEEE
Q psy2442 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGT----QSRYMVQEFPPGGSLLRIEPVRHARDDAVYE 85 (111)
Q Consensus 10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~ 85 (111)
.|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+... ..++...... ....|.|.++.. .|.|.|.
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~-~~~~L~I~~v~~-~D~G~Y~ 79 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHA-RVSSLTLKYIQY-TDAGEYL 79 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCc-cEEEEEEecCcc-CcCEEEE
Confidence 567766665555666899999999999999999999987765322 1222222111 224599999998 9999999
Q ss_pred EEeeeCCCceEeeEEEEE
Q psy2442 86 CVAENGVGDAVSAEASLT 103 (111)
Q Consensus 86 c~~~~~~~~~~~~~~~l~ 103 (111)
|.+.|..|.. ...+.|.
T Consensus 80 C~A~N~~G~~-~~~~~l~ 96 (97)
T cd05869 80 CTASNTIGQD-SQSMYLE 96 (97)
T ss_pred EEEecCCCCe-eEEEEEE
Confidence 9999999975 6666554
No 16
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.69 E-value=1.7e-15 Score=71.91 Aligned_cols=74 Identities=26% Similarity=0.369 Sum_probs=57.3
Q ss_pred EEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEE
Q psy2442 28 TSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLT 103 (111)
Q Consensus 28 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~ 103 (111)
+.|.|.+.|.|.|.+.|++++..+.....++...........|.|..+.. .|+|.|.|.+.|..|.. +....|.
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~G~~-~~~a~L~ 74 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATK-EDAGWYTVSAKNEAGIV-SCTARLD 74 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCH-HHCEEEEEEEEcCCCEE-EEEEEEe
Confidence 46899999999999999999998865445665543221222588999998 99999999999999975 6665554
No 17
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.69 E-value=1.6e-15 Score=73.68 Aligned_cols=81 Identities=32% Similarity=0.532 Sum_probs=65.1
Q ss_pred EcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCc
Q psy2442 15 LRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGD 94 (111)
Q Consensus 15 ~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~ 94 (111)
..+....+..|+.+.|.|.+.+.|.|.+.|++++..+... .++.. ....|.+.++.. .|+|.|.|.+.|..|.
T Consensus 4 ~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~-~~~~~-----~~~~L~i~~~~~-~D~G~Y~C~a~N~~G~ 76 (85)
T cd05728 4 KVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASE-NRIEV-----EAGDLRITKLSL-SDSGMYQCVAENKHGT 76 (85)
T ss_pred ccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCC-CeEEE-----eCCEEEEeeCCH-HHCEEEEEEEECCCCe
Confidence 4556678889999999999999999999999999987543 34433 233589999998 9999999999999987
Q ss_pred eEeeEEEEE
Q psy2442 95 AVSAEASLT 103 (111)
Q Consensus 95 ~~~~~~~l~ 103 (111)
. ...+.|.
T Consensus 77 ~-~~~~~l~ 84 (85)
T cd05728 77 I-YASAELA 84 (85)
T ss_pred E-EEEEEEE
Confidence 4 6666554
No 18
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.69 E-value=3.5e-15 Score=71.10 Aligned_cols=73 Identities=36% Similarity=0.595 Sum_probs=57.9
Q ss_pred CCcEEEEEEEeccCCCeEEEEECCeeccCCC--CceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEE
Q psy2442 25 GGITSFYCIARGDPIPVIQWRKNGKRVSGTQ--SRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASL 102 (111)
Q Consensus 25 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l 102 (111)
|+.+.|.|.+.+.|.|.+.|+++|..+.... .++.. ....|.|.++.. .|+|.|.|.+.|..|.. .....|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~-----~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~-~~~~~l 73 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV-----SSGALILTDVQP-SDTAVYQCEARNRHGNL-LANAHV 73 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe-----eCCEEEECCCCh-hhCEEEEEEEECCCCeE-EEEEEE
Confidence 6789999999999999999999998875432 13322 234589999998 99999999999999874 666666
Q ss_pred EE
Q psy2442 103 TV 104 (111)
Q Consensus 103 ~~ 104 (111)
.|
T Consensus 74 ~V 75 (76)
T cd05867 74 HV 75 (76)
T ss_pred EE
Confidence 54
No 19
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.69 E-value=1.5e-15 Score=71.68 Aligned_cols=72 Identities=28% Similarity=0.511 Sum_probs=57.6
Q ss_pred CCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEE
Q psy2442 25 GGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLT 103 (111)
Q Consensus 25 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~ 103 (111)
|+++.|.|.+.+.|.|.+.|++++..+... .++... ....|.|.++.. .|.|.|.|.+.|..|.. .....|.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~-~r~~~~----~~g~L~I~~v~~-~D~G~Y~C~A~N~~G~~-~~~~~l~ 72 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNN-SRISIW----DDGSLEILNITK-LDEGSYTCFAENNRGKA-NSTGVLS 72 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccC-CCEEEc----CCCEEEECcCCh-hHCEEEEEEEECCCCce-eEEEEEE
Confidence 678999999999999999999998876533 565553 234599999998 99999999999999875 5555543
No 20
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.69 E-value=3.4e-15 Score=72.68 Aligned_cols=81 Identities=35% Similarity=0.638 Sum_probs=62.9
Q ss_pred CcceeeecCCcEEEEEEE-eccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCce
Q psy2442 17 PRNQAVKAGGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDA 95 (111)
Q Consensus 17 ~~~~~~~~g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~ 95 (111)
+....+..|+++.|.|.+ .+.|.+.+.|++++..+.....++... ....|.|.++.. .|+|.|.|.+.|..|..
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~----~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~ 77 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIV----DDGNLLIAEARK-SDEGTYKCVATNMVGER 77 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEc----cCCEEEEeECCc-ccCEEEEEEEEeccCce
Confidence 455678899999999997 688889999999998876543444443 234599999998 99999999999998864
Q ss_pred EeeEEEE
Q psy2442 96 VSAEASL 102 (111)
Q Consensus 96 ~~~~~~l 102 (111)
.+....+
T Consensus 78 ~s~~~~l 84 (86)
T cd05724 78 ESAAARL 84 (86)
T ss_pred eeeeEEE
Confidence 3444443
No 21
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.68 E-value=4.2e-15 Score=70.60 Aligned_cols=74 Identities=26% Similarity=0.334 Sum_probs=57.4
Q ss_pred EEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEE
Q psy2442 28 TSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLT 103 (111)
Q Consensus 28 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~ 103 (111)
+.|.|.+.|.|.|.+.|++++..+.....++...........|.|..+.. .|.|.|.|.+.|..|.. .....|.
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~-~~~~~l~ 74 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANK-EDAGWYTVSAVNEAGVV-SCNARLD 74 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCc-ccCEEEEEEEEcCCCcE-EEEEEEe
Confidence 36899999999999999999998865445555543221223599999998 99999999999999975 6666554
No 22
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.68 E-value=1.2e-14 Score=73.69 Aligned_cols=100 Identities=24% Similarity=0.370 Sum_probs=70.8
Q ss_pred cCCCeeEEcCcce-ee---ecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCC---CCCeEEEEccCC-CCC
Q psy2442 8 LDPPEITLRPRNQ-AV---KAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP---PGGSLLRIEPVR-HAR 79 (111)
Q Consensus 8 ~~~p~~~~~~~~~-~~---~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~-~~~ 79 (111)
..+|.+...+... .+ ..|+.+.|.|.+.|.|.+.+.|++++..+.....++...... .....|.|.++. . .
T Consensus 2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~-~ 80 (109)
T cd05773 2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAA-L 80 (109)
T ss_pred ccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCcc-C
Confidence 3466665444321 12 246789999999999999999999999886433455432111 012458888876 5 8
Q ss_pred CCeEEEEEeeeCCCceEeeEEEEEEecCCC
Q psy2442 80 DDAVYECVAENGVGDAVSAEASLTVYEGEE 109 (111)
Q Consensus 80 d~g~y~c~~~~~~~~~~~~~~~l~~~~~~~ 109 (111)
|.|.|.|.+.|..|.. ...+.|.+.++|.
T Consensus 81 D~G~Y~C~A~N~~G~~-~~~i~L~~~~~p~ 109 (109)
T cd05773 81 DYALFTCTAHNSLGED-SLDIQLVSTSRPD 109 (109)
T ss_pred CCEEEEEEEEeCCccC-cEEEEEEecCCCC
Confidence 9999999999999985 8888888877663
No 23
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.68 E-value=5.8e-15 Score=73.74 Aligned_cols=86 Identities=17% Similarity=0.222 Sum_probs=65.2
Q ss_pred cceeeecCCcEEEEEEEec-cCCCeEEEEECCeeccCCCCceEEEeC---CCCCeEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442 18 RNQAVKAGGITSFYCIARG-DPIPVIQWRKNGKRVSGTQSRYMVQEF---PPGGSLLRIEPVRHARDDAVYECVAENGVG 93 (111)
Q Consensus 18 ~~~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~ 93 (111)
..+.+..|+.+.|.|.+.+ .|.|.+.|+++|..+............ ......|.|..+.. .|+|.|.|.+.|..|
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Ytc~A~N~~G 89 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKE-SEAGTYTFLASNSDA 89 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCH-hhCeeEEEEEECCCc
Confidence 3467889999999999999 888899999999988643222222110 00135599999998 999999999999999
Q ss_pred ceEeeEEEEEEe
Q psy2442 94 DAVSAEASLTVY 105 (111)
Q Consensus 94 ~~~~~~~~l~~~ 105 (111)
.. +..+.|.|.
T Consensus 90 ~~-~~t~~L~V~ 100 (101)
T cd04975 90 SK-SLTFELYVN 100 (101)
T ss_pred cE-EEEEEEEEE
Confidence 74 777777664
No 24
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.68 E-value=3.8e-15 Score=70.96 Aligned_cols=75 Identities=31% Similarity=0.490 Sum_probs=57.5
Q ss_pred CCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEE
Q psy2442 25 GGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104 (111)
Q Consensus 25 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~ 104 (111)
|+.+.|.|.+.|.|.|.+.|+++|..+........... ....+.+..+.. .|.|.|.|.+.|..|.. .....|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~---~~~~l~i~~v~~-~D~G~Y~C~A~N~~G~~-~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKV---DGDTIIFSKVQE-RSSAVYQCNASNEYGYL-LANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEe---cCCEEEECCCCH-hhCEEEEEEEEcCCCEE-EEEEEEEe
Confidence 67889999999999999999999988753211111111 233588889998 99999999999999975 77776655
No 25
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.68 E-value=9.9e-15 Score=72.73 Aligned_cols=90 Identities=30% Similarity=0.566 Sum_probs=65.2
Q ss_pred CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--CeeccC----CCCceEEEeCCCCCeEEEEccCCCCCCCeE
Q psy2442 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVSG----TQSRYMVQEFPPGGSLLRIEPVRHARDDAV 83 (111)
Q Consensus 10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~ 83 (111)
+|.+.. +.+..+..|+.++|.|.+.|.|.|.+.|++. +..+.. ...++...... ....|.|.++.. .|+|.
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~-~~~~L~I~~v~~-~D~G~ 78 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQH-GESSLHIKDVKL-SDSGR 78 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecC-CeeEEEEeeCCc-CCCEE
Confidence 567654 5567889999999999999999999999984 333321 11344433211 234599999998 99999
Q ss_pred EEEEeeeCCCceEeeEEEEE
Q psy2442 84 YECVAENGVGDAVSAEASLT 103 (111)
Q Consensus 84 y~c~~~~~~~~~~~~~~~l~ 103 (111)
|.|.+.|..|.. ...+.|.
T Consensus 79 Y~C~A~N~~G~~-~~~~~l~ 97 (98)
T cd05870 79 YDCEAASRIGGH-QKSMYLD 97 (98)
T ss_pred EEEEEeccCCcc-eeEEEEe
Confidence 999999999874 5555543
No 26
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.67 E-value=1.4e-14 Score=72.24 Aligned_cols=93 Identities=39% Similarity=0.641 Sum_probs=64.9
Q ss_pred CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCC----CCceEEEeCCCCCeEEEEc--cCCCCCCCeE
Q psy2442 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGT----QSRYMVQEFPPGGSLLRIE--PVRHARDDAV 83 (111)
Q Consensus 10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~--~~~~~~d~g~ 83 (111)
+|.+...+....+..|+.+.|.|.+.+.|.|.+.|+++|..+... ..+..... ++....+.+. .... .|.|.
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~-~D~G~ 78 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLP-SGSLFFLRVVHGRKGR-SDEGV 78 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEec-CCcEEEEEeeccCCCc-CcCEE
Confidence 467777788888999999999999999999999999999887541 11111111 1111112222 2256 89999
Q ss_pred EEEEeeeCCCceEeeEEEEEE
Q psy2442 84 YECVAENGVGDAVSAEASLTV 104 (111)
Q Consensus 84 y~c~~~~~~~~~~~~~~~l~~ 104 (111)
|.|.+.|..|...+....|.|
T Consensus 79 Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 79 YVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEEccccceecceEEEEe
Confidence 999999999874456665544
No 27
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.67 E-value=1.5e-14 Score=71.01 Aligned_cols=84 Identities=26% Similarity=0.455 Sum_probs=63.6
Q ss_pred cCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCce
Q psy2442 16 RPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDA 95 (111)
Q Consensus 16 ~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~ 95 (111)
.+....+..|+.+.|.|.+.|.|.|.+.|++++..+... ......... ....|.+.++.. .|.|.|.|.+.|..|..
T Consensus 6 ~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~-~~~~~~~~~-~~~~L~I~~v~~-~D~g~Y~C~A~N~~G~~ 82 (90)
T cd04972 6 GPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQT-RTDTLETTV-DIYNLQLSNITS-ETQTTVTCTAENPVGQA 82 (90)
T ss_pred CCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCC-ccEEEEecC-CEEEEEEecCCc-ccCEEEEEEEECCCCce
Confidence 445566889999999999999999999999999877532 221111111 334589999998 99999999999999874
Q ss_pred EeeEEEEE
Q psy2442 96 VSAEASLT 103 (111)
Q Consensus 96 ~~~~~~l~ 103 (111)
.....|.
T Consensus 83 -~~~~~L~ 89 (90)
T cd04972 83 -NVSVQVT 89 (90)
T ss_pred -eEEEEEe
Confidence 6665554
No 28
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.67 E-value=1.3e-14 Score=71.34 Aligned_cols=86 Identities=26% Similarity=0.455 Sum_probs=64.0
Q ss_pred EcCcceeeecCCcEEEEEEEeccCCCeEEEEEC-CeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442 15 LRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN-GKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVG 93 (111)
Q Consensus 15 ~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~ 93 (111)
..+..+.+..|+++.|.|.+.|.|. .+.|++. +..+. ...++.... ++....|.|..+.. .|+|.|.|.+.|..|
T Consensus 5 ~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~-~~~r~~~~~-~g~~~~L~I~~v~~-~D~G~Y~C~A~N~~G 80 (92)
T cd05866 5 ISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIV-SSQRVVVQK-EGVRSRLTIYNANI-EDAGIYRCQATDAKG 80 (92)
T ss_pred EEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEec-CCCCEEEEe-CCCeeEEEEecCCh-HHCEEEEEEEEcCCC
Confidence 4455678889999999999999887 8999985 55543 235555442 21334699999998 999999999999998
Q ss_pred ceEeeEEEEEE
Q psy2442 94 DAVSAEASLTV 104 (111)
Q Consensus 94 ~~~~~~~~l~~ 104 (111)
......+.|.+
T Consensus 81 ~~~~~~i~l~~ 91 (92)
T cd05866 81 QTQEATVVLEI 91 (92)
T ss_pred cEEEEEEEEEE
Confidence 75455555543
No 29
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.66 E-value=1.2e-14 Score=71.75 Aligned_cols=86 Identities=33% Similarity=0.545 Sum_probs=61.1
Q ss_pred CeeEEcCcceeeec---CCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCC-CCCCCeEEEE
Q psy2442 11 PEITLRPRNQAVKA---GGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVR-HARDDAVYEC 86 (111)
Q Consensus 11 p~~~~~~~~~~~~~---g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~d~g~y~c 86 (111)
|.+...+....+.. +..+.|.|.+.|.|.|.+.|++++..+.....++... ...|.+..+. . .|+|.|.|
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~-----~g~L~I~~~~~~-~D~G~Y~C 75 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMV-----GGNLVINNPDKY-KDAGRYVC 75 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEE-----CCEEEECcCCcC-CCCEEEEE
Confidence 45555555543333 4479999999999999999999998875433444332 2348887764 5 89999999
Q ss_pred EeeeCCCceEeeEEEE
Q psy2442 87 VAENGVGDAVSAEASL 102 (111)
Q Consensus 87 ~~~~~~~~~~~~~~~l 102 (111)
.+.|..|...+....|
T Consensus 76 ~A~N~~G~~~s~~a~l 91 (93)
T cd05849 76 IVSNIYGKVRSREATL 91 (93)
T ss_pred EEEeCcceEEEccEEE
Confidence 9999998754444444
No 30
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.66 E-value=2.1e-14 Score=70.99 Aligned_cols=85 Identities=28% Similarity=0.541 Sum_probs=60.3
Q ss_pred CeeEEcCcceeee---cCCcEEEEEEEeccCCCeEEEEECCeeccCCC-CceEEEeCCCCCeEEEEccC-CCCCCCeEEE
Q psy2442 11 PEITLRPRNQAVK---AGGITSFYCIARGDPIPVIQWRKNGKRVSGTQ-SRYMVQEFPPGGSLLRIEPV-RHARDDAVYE 85 (111)
Q Consensus 11 p~~~~~~~~~~~~---~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~-~~~~d~g~y~ 85 (111)
|.+...+..+.+. .|+.+.|.|.+.|.|.|.+.|++++..+.... .++.. ....|.+..+ .. .|+|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~-----~~g~L~i~~~~~~-~D~G~Y~ 75 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSL-----IDGNLIISNPSEV-KDSGRYQ 75 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEe-----eCCeEEEccCCcc-CcCEEEE
Confidence 4555566554443 47899999999999999999999998885332 22222 1234777776 45 8999999
Q ss_pred EEeeeCCCceEeeEEE
Q psy2442 86 CVAENGVGDAVSAEAS 101 (111)
Q Consensus 86 c~~~~~~~~~~~~~~~ 101 (111)
|.+.|..|...+....
T Consensus 76 C~A~N~~G~~~S~~~~ 91 (94)
T cd05848 76 CLATNSIGSILSREAL 91 (94)
T ss_pred EEEEcCCCeEEeccEE
Confidence 9999999875344443
No 31
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.65 E-value=2e-14 Score=69.81 Aligned_cols=79 Identities=34% Similarity=0.562 Sum_probs=60.8
Q ss_pred eeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCC--ceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEe
Q psy2442 20 QAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQS--RYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVS 97 (111)
Q Consensus 20 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~ 97 (111)
+.+..|+.+.|.|.+.+.|.|.+.|++++..+..... .+.... ....|.+..+.. .|+|.|.|.+.|..|.. .
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~---~~~~l~i~~~~~-~D~G~Y~C~a~N~~G~~-~ 78 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRN---QHWSLIMESVVP-SDKGNYTCVVENEYGSI-N 78 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeC---CceEEEEccCCc-ccCEEEEEEEEeCCCEE-E
Confidence 4677899999999999999999999999998754311 111111 234588888998 99999999999999874 6
Q ss_pred eEEEEE
Q psy2442 98 AEASLT 103 (111)
Q Consensus 98 ~~~~l~ 103 (111)
..+.|.
T Consensus 79 ~~~~l~ 84 (85)
T cd05857 79 HTYHLD 84 (85)
T ss_pred EEEEEE
Confidence 666664
No 32
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.65 E-value=2.4e-14 Score=67.83 Aligned_cols=73 Identities=22% Similarity=0.394 Sum_probs=57.9
Q ss_pred cEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEE
Q psy2442 27 ITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLT 103 (111)
Q Consensus 27 ~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~ 103 (111)
.+.|.|.+.|.|.|.+.|++++..+... .++...... ....|.|.++.. .|+|.|.|.+.|..|.. +..+.|.
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~-~~~~~~~~~-~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~-~~~~~l~ 73 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLS-GRVQIETTA-SSTSLVIKNAER-SDSGKYTLTLKNPAGEK-SATINVK 73 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCC-CeEEEEECC-CeEEEEECCCCc-CcCEEEEEEEECCCccE-EEEEEEE
Confidence 3679999999999999999999988433 455544322 345699999998 99999999999999874 6666654
No 33
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.65 E-value=2.9e-14 Score=70.79 Aligned_cols=90 Identities=31% Similarity=0.497 Sum_probs=65.8
Q ss_pred CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCC----CCceEEEeCCCCCeEEEEccCCCCCCCeEEE
Q psy2442 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGT----QSRYMVQEFPPGGSLLRIEPVRHARDDAVYE 85 (111)
Q Consensus 10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~ 85 (111)
+|.+. ...+..+..|+.+.|.|.+.+.|.|.+.|++++..+... ..++.... ......|.|.++.. .|+|.|.
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~v~~-~D~G~Y~ 78 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRG-HARVSSLTLKDVQL-TDAGRYD 78 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeC-CccEEEEEECcCCc-CcCEEeE
Confidence 45664 344567889999999999999999999999988655422 12333221 11234599999998 9999999
Q ss_pred EEeeeCCCceEeeEEEEE
Q psy2442 86 CVAENGVGDAVSAEASLT 103 (111)
Q Consensus 86 c~~~~~~~~~~~~~~~l~ 103 (111)
|.+.|..|.. ...+.|.
T Consensus 79 C~a~N~~G~~-~~s~~l~ 95 (96)
T cd05732 79 CEASNRIGGD-QQSMYLE 95 (96)
T ss_pred EEEEeCCCCc-EEEEEEe
Confidence 9999999975 6665554
No 34
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.64 E-value=1.8e-14 Score=68.58 Aligned_cols=75 Identities=33% Similarity=0.470 Sum_probs=58.3
Q ss_pred CCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEE
Q psy2442 25 GGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104 (111)
Q Consensus 25 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~ 104 (111)
|+.+.|.|.+.+.|.|.+.|++++..+........... ....|.+..+.. .|.|.|.|.+.|..|.. .....|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~---~~~~L~i~~v~~-~D~G~Y~C~A~N~~G~~-~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRV---DGGTLILSNVQP-NDTAVYQCNASNVHGYL-LANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEc---cCCEEEECCCCh-hhCEEEEEEEEccCCeE-EEeEEEEE
Confidence 67899999999999999999999988754322211111 345589999998 99999999999998874 66666654
No 35
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.64 E-value=2.1e-14 Score=68.53 Aligned_cols=74 Identities=27% Similarity=0.542 Sum_probs=55.8
Q ss_pred EEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceE-eeEEEEEEe
Q psy2442 28 TSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAV-SAEASLTVY 105 (111)
Q Consensus 28 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~-~~~~~l~~~ 105 (111)
++|.|.+.|.|.|.+.|+++|..+.....++.... ....|.|.++.. .|+|.|.|.+.|..|... ...+.|.|.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~---~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSS---KERTLTLRSAGP-DDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeC---CCCEEEEeeCCc-ccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 47899999999999999999998754433444332 334589999998 999999999999988632 345565553
No 36
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.64 E-value=1.4e-14 Score=68.52 Aligned_cols=72 Identities=32% Similarity=0.543 Sum_probs=57.7
Q ss_pred CCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEE
Q psy2442 25 GGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLT 103 (111)
Q Consensus 25 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~ 103 (111)
|+.+.|.|.+.+.|.|.+.|++++..+... .++... ....|.|.++.. .|+|.|.|.+.|..|.. .....|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~~----~~~~L~i~~v~~-~D~G~Y~C~a~N~~G~~-~~~~~l~ 72 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNS-SRICIW----PDGSLEILNVTK-SDEGKYTCFAENFFGKA-NSTGSLS 72 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccC-CCEEEC----CCCeEEEccCCh-hHCEEEEEEEECCCCce-EEEEEEE
Confidence 678999999999999999999999887533 455443 234599999998 99999999999999874 6666554
No 37
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.64 E-value=5.1e-14 Score=68.39 Aligned_cols=81 Identities=23% Similarity=0.274 Sum_probs=60.9
Q ss_pred CcEEEEEEEeccCCC--eEEEEECCeeccCC--CCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEE
Q psy2442 26 GITSFYCIARGDPIP--VIQWRKNGKRVSGT--QSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEAS 101 (111)
Q Consensus 26 ~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~ 101 (111)
+++.|.|.+.+.|.| .+.|++++..+... ..++...........|.|.+++. .|.|.|.|.+.|..|.. +....
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~YtC~A~n~~g~~-~~~~~ 78 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQL-SHAGTYTCTAQTVVDSA-SASAT 78 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCCh-hhCeEEEEEEecCCCCE-EEEEE
Confidence 468999999999887 57999999887432 22332211111234699999998 99999999999999985 88888
Q ss_pred EEEecCC
Q psy2442 102 LTVYEGE 108 (111)
Q Consensus 102 l~~~~~~ 108 (111)
|.|.++|
T Consensus 79 L~V~~~P 85 (85)
T cd05854 79 LVVRGPP 85 (85)
T ss_pred EEEECCC
Confidence 8888765
No 38
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.63 E-value=2.2e-14 Score=67.49 Aligned_cols=70 Identities=31% Similarity=0.612 Sum_probs=54.3
Q ss_pred cEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEE
Q psy2442 27 ITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLT 103 (111)
Q Consensus 27 ~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~ 103 (111)
.+.|.|.+.|.|.|.+.|++++..+... .++.... . ..+.+..+.. .|.|.|.|.+.|..|.. .....|.
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~-~~~~~~~---~-~~l~i~~v~~-~D~G~Y~C~A~N~~G~~-~~~~~L~ 70 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPS-DYFKIVK---E-HNLQVLGLVK-SDEGFYQCIAENDVGNV-QASAQLI 70 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCC-CCEEEEe---c-CCEEEEcCCc-ccCEEEEEEEEcCCCEE-EEEEEEE
Confidence 3689999999999999999999887543 4444432 2 2377778888 99999999999999874 6666554
No 39
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.63 E-value=3.5e-14 Score=70.39 Aligned_cols=85 Identities=34% Similarity=0.589 Sum_probs=60.8
Q ss_pred EEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCC-ceEEEeCCCCCeEEEEccC-----CCCCCCeEEEEE
Q psy2442 14 TLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQS-RYMVQEFPPGGSLLRIEPV-----RHARDDAVYECV 87 (111)
Q Consensus 14 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~-----~~~~d~g~y~c~ 87 (111)
...+....+..|+++.|.|.+.+.|.|.+.|+++|..+..... ++.... .. .+.+..+ .. .|.|.|.|.
T Consensus 3 ~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~---~~-~l~i~~v~~~~~~~-~D~G~Y~C~ 77 (95)
T cd05722 3 LSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLP---NG-SLLITSVVHSKHNK-PDEGFYQCV 77 (95)
T ss_pred EECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEcc---CC-eEEEeeeeccCCCC-CcCEEEEEE
Confidence 3456666778899999999999999999999999998864322 232221 22 2444443 46 899999999
Q ss_pred eeeC-CCceEeeEEEEE
Q psy2442 88 AENG-VGDAVSAEASLT 103 (111)
Q Consensus 88 ~~~~-~~~~~~~~~~l~ 103 (111)
+.|. .|...+..+.|.
T Consensus 78 a~N~~~G~~~s~~~~l~ 94 (95)
T cd05722 78 AQNDSLGSIVSRTARLT 94 (95)
T ss_pred EECCccCcEEEeeeEEe
Confidence 9999 887545555554
No 40
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.63 E-value=1.5e-13 Score=67.99 Aligned_cols=86 Identities=31% Similarity=0.537 Sum_probs=60.9
Q ss_pred CeeEEcCcceeeecC---CcEEEEEEEeccCCCeEEEEECCeeccCC-CCceEEEeCCCCCeEEEEccC-CCCCCCeEEE
Q psy2442 11 PEITLRPRNQAVKAG---GITSFYCIARGDPIPVIQWRKNGKRVSGT-QSRYMVQEFPPGGSLLRIEPV-RHARDDAVYE 85 (111)
Q Consensus 11 p~~~~~~~~~~~~~g---~~~~l~c~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~-~~~~d~g~y~ 85 (111)
|.+...+..+.+.+| +++.|.|.+.+.|.+.+.|+++|..+... ..++... . ..|.|.+. .. .|+|.|.
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~----~-g~L~I~~~~~~-~D~G~Y~ 75 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLV----A-GNLVINNPQKA-RDAGSYQ 75 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEE----C-CeEEEccCCcc-CcCEEEE
Confidence 455556666555444 57999999999999999999999988532 2333332 2 33777664 45 8999999
Q ss_pred EEeeeCCCceEeeEEEE
Q psy2442 86 CVAENGVGDAVSAEASL 102 (111)
Q Consensus 86 c~~~~~~~~~~~~~~~l 102 (111)
|.+.|..|...+....|
T Consensus 76 C~A~N~~G~~~s~~a~l 92 (94)
T cd05850 76 CLAINRCGTVVSREANL 92 (94)
T ss_pred EEEEcCcCcEEEEEEEE
Confidence 99999998754444444
No 41
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.62 E-value=3e-14 Score=66.05 Aligned_cols=65 Identities=26% Similarity=0.373 Sum_probs=52.3
Q ss_pred EEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEE
Q psy2442 28 TSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104 (111)
Q Consensus 28 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~ 104 (111)
+.|.|.+.|.|.|.+.|+++|..+... . ....|.|.++.. +|+|.|.|.+.|..|.. ...+.+.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~--~--------~~~~L~i~~v~~-~D~G~YtC~a~N~~g~~-~~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK--H--------SQHSLQIKDVTE-ASAGTYTLVLWNSAAGL-EKRISLEL 65 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc--C--------CcCEEEECCCCH-HHCEEEEEEEEECCccE-EEEEEEEE
Confidence 368999999999999999999987521 0 334589999998 99999999999999864 55655554
No 42
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.61 E-value=4.1e-14 Score=69.46 Aligned_cols=78 Identities=32% Similarity=0.491 Sum_probs=60.1
Q ss_pred CCcEEEEEEEeccCCCeEEEEECCeecc-------CCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEe
Q psy2442 25 GGITSFYCIARGDPIPVIQWRKNGKRVS-------GTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVS 97 (111)
Q Consensus 25 g~~~~l~c~~~~~~~~~~~w~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~ 97 (111)
|+++.|.|.+.+.|.|.+.|++.+.... ....++... ....|.|.++.. .|+|.|.|.+.|..|.. .
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~----~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~-~ 74 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVS----QTGDLTITNVQR-SDVGYYICQTLNVAGSI-L 74 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEEC----CCCeEEEeeCCh-hhCEEEEEEEEcCCCce-E
Confidence 6789999999999999999999876431 112344432 233599999998 99999999999999985 7
Q ss_pred eEEEEEEecCC
Q psy2442 98 AEASLTVYEGE 108 (111)
Q Consensus 98 ~~~~l~~~~~~ 108 (111)
..+.|.|.+..
T Consensus 75 ~~~~l~V~~~~ 85 (90)
T cd05726 75 TKAYLEVTDVI 85 (90)
T ss_pred EEEEEEEeecc
Confidence 78888887543
No 43
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.61 E-value=3.8e-14 Score=67.95 Aligned_cols=76 Identities=24% Similarity=0.517 Sum_probs=59.0
Q ss_pred cceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEe
Q psy2442 18 RNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVS 97 (111)
Q Consensus 18 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~ 97 (111)
....+..|+.+.|.|.+.+. .+.+.|+++|..+... .++... ...|.|..+.. .|+|.|.|.+.|..|.. .
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~-~~~~~~-----~~~L~I~~~~~-~DsG~Y~C~a~n~~g~~-~ 72 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGEN-NRTRIT-----GEEVQIKDAVP-RDSGLYACVTSSPSGSD-T 72 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCC-ceEEEe-----CCEEEECCCCh-hhCEEEEEEEeCCCCcc-c
Confidence 34677899999999999886 5689999999888643 455442 23589999998 99999999999988764 5
Q ss_pred eEEEE
Q psy2442 98 AEASL 102 (111)
Q Consensus 98 ~~~~l 102 (111)
..+.+
T Consensus 73 ~~~~v 77 (79)
T cd04973 73 TYFSV 77 (79)
T ss_pred EEEEE
Confidence 55544
No 44
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.61 E-value=5.8e-14 Score=67.90 Aligned_cols=81 Identities=20% Similarity=0.235 Sum_probs=61.4
Q ss_pred CcEEEEEEEecc--CCCeEEEEECCeeccC--CCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEE
Q psy2442 26 GITSFYCIARGD--PIPVIQWRKNGKRVSG--TQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEAS 101 (111)
Q Consensus 26 ~~~~l~c~~~~~--~~~~~~w~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~ 101 (111)
+++.|.|.+.+. ..+.+.|+++|..+.. ...++...........|.|.+++. .|+|.|.|.+.|..+.. .....
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~-~dsG~YtC~a~n~~~~~-~a~a~ 78 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQL-KHAGKYVCMVQTSVDKL-SAAAD 78 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCH-HHCEEEEEEEEcccCce-EEEEE
Confidence 367899998774 4668999999999862 223544432111334599999998 99999999999999885 88888
Q ss_pred EEEecCC
Q psy2442 102 LTVYEGE 108 (111)
Q Consensus 102 l~~~~~~ 108 (111)
|.|.++|
T Consensus 79 L~V~~pP 85 (85)
T cd05853 79 LIVRGPP 85 (85)
T ss_pred EEEecCC
Confidence 8888876
No 45
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.61 E-value=1.2e-13 Score=68.09 Aligned_cols=85 Identities=26% Similarity=0.450 Sum_probs=59.7
Q ss_pred EcCcceeeecCCcEEEEEEEeccCCCeEEEEE-CCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442 15 LRPRNQAVKAGGITSFYCIARGDPIPVIQWRK-NGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVG 93 (111)
Q Consensus 15 ~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~ 93 (111)
..+....+..|+++.|.|.+.|.|. .+.|++ ++..+... .++...........|.|.++.. .|+|.|.|.+.|..|
T Consensus 5 v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~g 81 (92)
T cd04977 5 IVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQ-QQISVVQNDDVRSTLTIYNANI-EDAGIYKCVATDAKG 81 (92)
T ss_pred EecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccC-CCEEEEeCCCCEEEEEEecCCc-ccCEEEEEEEEcCCC
Confidence 3455577889999999999999864 899997 45444332 3333332222335699999998 999999999999865
Q ss_pred ceEeeEEEE
Q psy2442 94 DAVSAEASL 102 (111)
Q Consensus 94 ~~~~~~~~l 102 (111)
......+.|
T Consensus 82 ~~~~~sv~l 90 (92)
T cd04977 82 TESEATVNL 90 (92)
T ss_pred CcceeEEEE
Confidence 433445444
No 46
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.60 E-value=7.4e-14 Score=66.81 Aligned_cols=68 Identities=34% Similarity=0.584 Sum_probs=54.5
Q ss_pred CCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCce
Q psy2442 25 GGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDA 95 (111)
Q Consensus 25 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~ 95 (111)
|+++.|.|.+.+.|.|.+.|++++..+... .++...... ....|.|.++.. .|+|.|.|.+.|..|..
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~-~~~~~~~~~-~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~ 68 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDS-ARVSITSEG-GYGTLTIRDVKE-SDQGAYTCEAINTRGMV 68 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCC-CCEEEEECC-CEEEEEECCCCh-HHCEEEEEEEEecCCEE
Confidence 678999999999999999999998877543 454443322 335699999998 99999999999998864
No 47
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.60 E-value=8.5e-14 Score=69.59 Aligned_cols=85 Identities=18% Similarity=0.247 Sum_probs=63.6
Q ss_pred ceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeC----CCCCeEEEEccCCCCCCCeEEEEEeeeCCCc
Q psy2442 19 NQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF----PPGGSLLRIEPVRHARDDAVYECVAENGVGD 94 (111)
Q Consensus 19 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~ 94 (111)
...+..|..+.|.|.+.|.|.|.+.|+++|..+............ ......|.|.++.. .|.|.|.|.+.|..|.
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~-~D~G~Ytc~A~N~~g~ 90 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKE-EDSGLYTALAQNEDAV 90 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCH-HHCEEEEEEEEcCCce
Confidence 356778899999999999999999999999998643222111110 01234599999998 9999999999999987
Q ss_pred eEeeEEEEEEe
Q psy2442 95 AVSAEASLTVY 105 (111)
Q Consensus 95 ~~~~~~~l~~~ 105 (111)
. +..+.+.|.
T Consensus 91 ~-~~t~~l~V~ 100 (101)
T cd05859 91 K-SYTFALQIQ 100 (101)
T ss_pred E-EEEEEEEEE
Confidence 4 667766653
No 48
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.60 E-value=1.7e-13 Score=66.61 Aligned_cols=81 Identities=23% Similarity=0.295 Sum_probs=59.8
Q ss_pred CcEEEEEEEeccCCC--eEEEEECCeeccCCC--CceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEE
Q psy2442 26 GITSFYCIARGDPIP--VIQWRKNGKRVSGTQ--SRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEAS 101 (111)
Q Consensus 26 ~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~ 101 (111)
+++.|.|.+.+.|.+ .+.|++++..+.... .++...........|.|.+++. .|+|.|.|.+.|..|.. +....
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n~~g~~-~~~~~ 78 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQL-KHAGKYTCTAQTVVDSL-SASAD 78 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCH-HhCeeeEEEEecCCCcE-EEEEE
Confidence 467899999998877 568999998875321 1221111111334599999998 99999999999999875 78888
Q ss_pred EEEecCC
Q psy2442 102 LTVYEGE 108 (111)
Q Consensus 102 l~~~~~~ 108 (111)
|.|.++|
T Consensus 79 l~V~~pP 85 (85)
T cd04970 79 LIVRGPP 85 (85)
T ss_pred EEEECCC
Confidence 8888775
No 49
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.59 E-value=7e-14 Score=65.72 Aligned_cols=68 Identities=29% Similarity=0.413 Sum_probs=54.1
Q ss_pred EEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEE
Q psy2442 29 SFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104 (111)
Q Consensus 29 ~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~ 104 (111)
.|.|.+.|.|.|.+.|+++|..+... .++.. ....|.|.++.. .|+|.|.|.+.|..|.. ...+.+.+
T Consensus 2 ~l~c~v~g~P~p~v~W~k~g~~l~~~-~~~~~-----~~~~L~I~~v~~-~D~G~YtC~a~N~~g~~-~~~~~~~~ 69 (71)
T cd04976 2 RLPVKVKAYPPPEIQWYKNGKLISEK-NRTKK-----SGHSLTIKDVTE-EDAGNYTVVLTNKQAKL-EKRLTFTL 69 (71)
T ss_pred EEEeEEEEeCCCEEEEEECCEECCCC-CEEEc-----CCCEEEECcCCH-HHCEEEEEEEEcCCccE-EEEEEEEE
Confidence 68999999999999999999988643 33322 335599999998 99999999999998874 66666654
No 50
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.59 E-value=1e-13 Score=65.68 Aligned_cols=72 Identities=36% Similarity=0.545 Sum_probs=54.6
Q ss_pred EEEEEEEeccCCCeEEEEECCeeccC-CCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEE
Q psy2442 28 TSFYCIARGDPIPVIQWRKNGKRVSG-TQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104 (111)
Q Consensus 28 ~~l~c~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~ 104 (111)
++|.|.+.|.|.|.+.|++++..+.. ...++... ....|.+..+.. .|+|.|.|.+.|..|...+....|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~----~~g~L~i~~~~~-~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL----RSGALQIENSEE-SDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc----CCcEEEECCCCh-hhCEEEEEEEECCCCceEcccEEEEE
Confidence 36899999999999999999887753 22444443 233488999998 99999999999999875455555544
No 51
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.59 E-value=4.2e-14 Score=66.15 Aligned_cols=68 Identities=37% Similarity=0.669 Sum_probs=53.8
Q ss_pred EEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEE
Q psy2442 28 TSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASL 102 (111)
Q Consensus 28 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l 102 (111)
+.|.|.+.|.|.|.+.|++++..+... .++... ....|.|.++.. .|+|.|.|.+.|..|.. +..+.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~-~~~~~~----~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~-~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTES-GKFHIS----PEGYLAIRDVGV-ADQGRYECVARNTIGYA-SVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCC-CCEEEC----CCCEEEECcCCh-hhCEEEEEEEECCCCcE-EEEEEe
Confidence 368999999999999999999877543 444443 234599999998 99999999999999874 555544
No 52
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.59 E-value=6.1e-14 Score=67.61 Aligned_cols=78 Identities=24% Similarity=0.427 Sum_probs=58.8
Q ss_pred eeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeE
Q psy2442 20 QAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAE 99 (111)
Q Consensus 20 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~ 99 (111)
+....|+.+.|.|.+.+.|.|.+.|++++..+.... ..... . ....|.|.++.. .|+|.|.|.+.|..|.. ...
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~-~~~~~--~-~~~~L~i~~v~~-~D~G~Y~C~a~N~~G~~-~~~ 77 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTE-IGESR--K-KKWTLSLKNLKP-EDSGKYTCHVSNRAGEI-NAT 77 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCc-cceec--C-ceEEEEEccCCh-hhCEEEEEEEEcCCccE-EEE
Confidence 456679999999999999999999999988764321 11111 1 234588999998 99999999999999874 666
Q ss_pred EEEE
Q psy2442 100 ASLT 103 (111)
Q Consensus 100 ~~l~ 103 (111)
+.|.
T Consensus 78 ~~v~ 81 (82)
T cd05856 78 YKVD 81 (82)
T ss_pred EEEe
Confidence 5553
No 53
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.59 E-value=5.8e-14 Score=66.01 Aligned_cols=70 Identities=31% Similarity=0.522 Sum_probs=54.1
Q ss_pred EEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEE
Q psy2442 28 TSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104 (111)
Q Consensus 28 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~ 104 (111)
+.|.|.+.|.|.|.+.|++++..+... +..... ....|.|..+.. .|+|.|.|.+.|..|.. +..+.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~--~~~~~~---~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~-~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPN--RTKKLN---NNKTLQLDNVLE-SDDGEYVCTAENSEGSA-RHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCC--ceeEEc---CCCEEEEcccCH-HhCEEEEEEEEcCCCeE-EEEEEEEE
Confidence 368999999999999999998766432 222221 345699999998 99999999999999974 66666654
No 54
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.58 E-value=1.6e-13 Score=65.97 Aligned_cols=74 Identities=24% Similarity=0.441 Sum_probs=56.0
Q ss_pred EcCcceeeecCCcEEEEEEEeccCCC-eEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442 15 LRPRNQAVKAGGITSFYCIARGDPIP-VIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVG 93 (111)
Q Consensus 15 ~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~ 93 (111)
..+..+.+..|+.+.|.|.+.|.|.| .+.|++++..+... ... ....|.+..+ .|.|.|.|.+.|..|
T Consensus 3 ~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~---~~~-----~~s~L~i~~~---~d~g~Y~C~A~N~~G 71 (81)
T cd05749 3 VEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP---PAP-----SPSVLNVPGL---NETSKFSCEAHNAKG 71 (81)
T ss_pred CCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC---CCC-----CCCEEEEccc---cCCeEEEEEEEeccC
Confidence 35666788999999999999999999 79999999987531 111 2344777665 578999999999998
Q ss_pred ceEeeE
Q psy2442 94 DAVSAE 99 (111)
Q Consensus 94 ~~~~~~ 99 (111)
...+..
T Consensus 72 ~~~s~~ 77 (81)
T cd05749 72 VTTSRT 77 (81)
T ss_pred cEEeee
Confidence 653333
No 55
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.58 E-value=1e-13 Score=65.70 Aligned_cols=72 Identities=36% Similarity=0.659 Sum_probs=54.3
Q ss_pred CCcEEEEEEEeccCCCeEEEEE-CCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEE
Q psy2442 25 GGITSFYCIARGDPIPVIQWRK-NGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLT 103 (111)
Q Consensus 25 g~~~~l~c~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~ 103 (111)
|+.+.|.|.+.+.|.|.+.|++ ++..+... .+.... ....|.|..+.. .|.|.|.|.+.|..|.. +..+.|.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~-~~~~~~----~~~~L~i~~~~~-~D~G~Y~C~a~N~~G~~-~~~~~l~ 73 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNS-SRTLVY----DNGTLDILITTV-KDTGSFTCIASNAAGEA-TATVELH 73 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCC-CeEEEe----cCCEEEEEECCh-hhCEEEEEEEECCCCeE-EEEEEEE
Confidence 6789999999999999999997 45544322 333332 234588889998 99999999999999874 6666554
No 56
>KOG4194|consensus
Probab=99.58 E-value=2.7e-14 Score=88.79 Aligned_cols=103 Identities=30% Similarity=0.550 Sum_probs=86.8
Q ss_pred ceeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCee-ccCCC-CceEEEeCCCCCeEEEEccCCCCC
Q psy2442 2 YRKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKR-VSGTQ-SRYMVQEFPPGGSLLRIEPVRHAR 79 (111)
Q Consensus 2 ~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~-~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~ 79 (111)
.++|+|+..|.+...|.++....|+.+.+.|.+.|.|.|.+.|.+.|.. ++... .|.+... ....+.|-++.. +
T Consensus 604 k~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmp---edd~f~Itnvk~-e 679 (873)
T KOG4194|consen 604 KAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMP---EDDVFFITNVKI-E 679 (873)
T ss_pred eeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecC---CCCEEEEecccc-c
Confidence 4789999999999999999999999999999999999999999987665 55433 3444443 445588899998 9
Q ss_pred CCeEEEEEeeeCCCceEeeEEEEEEecCCC
Q psy2442 80 DDAVYECVAENGVGDAVSAEASLTVYEGEE 109 (111)
Q Consensus 80 d~g~y~c~~~~~~~~~~~~~~~l~~~~~~~ 109 (111)
|.|.|.|.+.|..|.- +...++.|.+.|.
T Consensus 680 D~GiYtC~A~n~AG~i-sanAtL~V~e~p~ 708 (873)
T KOG4194|consen 680 DQGIYTCTAQNVAGQI-SANATLTVLETPS 708 (873)
T ss_pred ccceeEEeeeccccce-eeceEEEEecCCc
Confidence 9999999999999984 8889999988764
No 57
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.56 E-value=1.5e-13 Score=65.26 Aligned_cols=72 Identities=36% Similarity=0.621 Sum_probs=53.4
Q ss_pred EEEEEEEeccCCCeEEEEECCeec-c-CCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEE
Q psy2442 28 TSFYCIARGDPIPVIQWRKNGKRV-S-GTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104 (111)
Q Consensus 28 ~~l~c~~~~~~~~~~~w~~~~~~~-~-~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~ 104 (111)
+.|.|.+.|.|.|.+.|++++... . ....++.... ....|.|.++.. .|+|.|.|.+.|..|.. .....|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~---~~~~L~I~~~~~-~D~G~Y~C~A~N~~G~~-~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMP---EDDVFFIVDVKI-EDTGVYSCTAQNTAGSI-SANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEec---CCCEEEEeeCCc-ccCEEEEEEEEcCCCEE-EeeEEEEE
Confidence 368999999999999999987642 2 1123333322 334589999998 99999999999999874 66666655
No 58
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.56 E-value=7.9e-13 Score=65.87 Aligned_cols=90 Identities=29% Similarity=0.410 Sum_probs=64.9
Q ss_pred CCeeEEcCcceeeecCCcEEEEEEEeccCCC-eEEEEECCeeccCC-CCceEEEeCC---CCCeEEEEccCCCCCC-CeE
Q psy2442 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIP-VIQWRKNGKRVSGT-QSRYMVQEFP---PGGSLLRIEPVRHARD-DAV 83 (111)
Q Consensus 10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~-~~~~~~~~~~---~~~~~l~~~~~~~~~d-~g~ 83 (111)
+|.+ ..+....+..|+.+.|.|.+.+.|.| .+.|++++..+... ..++.+.... .....|.|..+.. .| .|.
T Consensus 2 pp~i-~~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~-~d~~G~ 79 (98)
T cd05758 2 PPII-TSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQE-SDFQTS 79 (98)
T ss_pred CCeE-cCCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccc-ccccee
Confidence 4444 34455678899999999999999998 69999999877543 2455544321 1124588999887 66 799
Q ss_pred EEEEeeeCCCceEeeEEEE
Q psy2442 84 YECVAENGVGDAVSAEASL 102 (111)
Q Consensus 84 y~c~~~~~~~~~~~~~~~l 102 (111)
|.|.+.|..|.. ...+.|
T Consensus 80 Y~C~A~N~~G~~-~~~~~L 97 (98)
T cd05758 80 YNCTAWNSFGSG-TAIISL 97 (98)
T ss_pred EEEEEEcCCCcc-cEEEEe
Confidence 999999999875 555443
No 59
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.56 E-value=1.4e-13 Score=64.38 Aligned_cols=68 Identities=38% Similarity=0.659 Sum_probs=52.9
Q ss_pred EEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEE
Q psy2442 28 TSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLT 103 (111)
Q Consensus 28 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~ 103 (111)
+.|.|.+.+.|.|.+.|++++..+.. .++... ....|.|.++.. .|+|.|.|.+.|..|.. .....|.
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~--~~~~~~----~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~-~~~~~l~ 68 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPK--GRAEIL----DDKSLKIRNVTA-GDEGSYTCEAENMVGKI-EASASLT 68 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCC--CcEEEe----eCCEEEECcCCh-hHCEEEEEEEEcCCCcE-EEEEEEE
Confidence 46899999999999999999776543 344443 234599999998 99999999999999874 6665554
No 60
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.54 E-value=3.5e-13 Score=63.07 Aligned_cols=65 Identities=23% Similarity=0.358 Sum_probs=50.7
Q ss_pred EEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEE
Q psy2442 29 SFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASL 102 (111)
Q Consensus 29 ~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l 102 (111)
.+.|.+.|.|.|.+.|++++..+... .+ .. ....|.|..+.. .|.|.|.|.+.|..|.. .....+
T Consensus 2 ~~~c~v~G~P~P~v~W~k~g~~l~~~-~~--~~----~~~~L~I~~v~~-~D~G~YtC~a~N~~G~~-~~~~t~ 66 (70)
T cd05864 2 KIPVKYYGYPPPEVKWYKNGQLIVLN-HT--FK----RGVHLTIYEVTE-KDAGNYTVVLTNPITKE-EQRHTF 66 (70)
T ss_pred EEEeEEEEeCCCEEEEEECCEECCCC-CE--Ec----cCCEEEECcCCH-HHCEEEEEEEEECCCce-eeEEEE
Confidence 58899999999999999999988642 22 11 234589999998 99999999999999864 444433
No 61
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.53 E-value=3.5e-13 Score=63.26 Aligned_cols=70 Identities=36% Similarity=0.586 Sum_probs=53.6
Q ss_pred EEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEE
Q psy2442 28 TSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104 (111)
Q Consensus 28 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~ 104 (111)
+.|.|.+.|.|.|.+.|++.+..+... +..... ....|.|.++.. .|.|.|.|.+.|..|.. ...+.+.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~--~~~~~~---~~~~L~i~~v~~-~D~G~Y~C~a~N~~G~~-~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPAD--RTKFEN---FNKTLKIDNVSE-EDDGEYRCTASNSLGSA-RHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCC--ceeEec---CCCEEEECCCCH-HHCEEEEEEEEeCCceE-EEEEEEEE
Confidence 368999999999999999998776432 222211 334599999998 99999999999999874 66666654
No 62
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.52 E-value=1.2e-12 Score=62.96 Aligned_cols=73 Identities=22% Similarity=0.325 Sum_probs=53.8
Q ss_pred EEEEEEeccCCCeEEEEECCeeccCCCCceEE--Ee----CCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEE
Q psy2442 29 SFYCIARGDPIPVIQWRKNGKRVSGTQSRYMV--QE----FPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASL 102 (111)
Q Consensus 29 ~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~--~~----~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l 102 (111)
.+.|.+.|.|.|.+.|+++|..+... .+... .. .......|.|..+.. .|+|.|.|.+.|..|.. ...+.+
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~-~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~YtC~A~N~~G~~-~~~~~~ 78 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNES-DYIRTEIHYEVTTPTEYHGCLQFDNPTH-VNNGNYTLVASNEYGQD-SKSISA 78 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCC-CceeEEEEeecccccccEEEEEECCCCc-ccCeEEEEEEEeCCCCe-eeEEEe
Confidence 36799999999999999999988644 22211 11 011234589999998 99999999999999985 666665
Q ss_pred EE
Q psy2442 103 TV 104 (111)
Q Consensus 103 ~~ 104 (111)
.+
T Consensus 79 ~~ 80 (81)
T cd04971 79 HF 80 (81)
T ss_pred ee
Confidence 43
No 63
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.52 E-value=1.1e-12 Score=61.33 Aligned_cols=67 Identities=31% Similarity=0.674 Sum_probs=49.9
Q ss_pred CCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEE
Q psy2442 25 GGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEAS 101 (111)
Q Consensus 25 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~ 101 (111)
|+.+.|.|.+.|.|.|.+.|++++..+... .++.. ....|.+.++ .|.|.|.|.+.|..|.. .....
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~-~~~~~-----~~~~L~i~~~---~d~G~Y~C~A~N~~G~~-~~~a~ 67 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKE-DEMPV-----GRNVLELTNI---YESANYTCVAISSLGMI-EATAQ 67 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCc-cceec-----CccEEEEecc---ccCeeEEEEEEeCCCEE-EEEEE
Confidence 678999999999999999999999887432 22221 2234777764 57899999999999863 55443
No 64
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.51 E-value=5.5e-13 Score=65.88 Aligned_cols=78 Identities=24% Similarity=0.288 Sum_probs=58.2
Q ss_pred ceeeecCCcEEEEEEEec-----cCCCeEEEEECCeeccCC---CCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeee
Q psy2442 19 NQAVKAGGITSFYCIARG-----DPIPVIQWRKNGKRVSGT---QSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAEN 90 (111)
Q Consensus 19 ~~~~~~g~~~~l~c~~~~-----~~~~~~~w~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~ 90 (111)
...+.+|+.+.|.|...+ .|.+.+.|++++..+... ..++.. ....|.|..+.. +|+|.|.|.+.|
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~-----~~~~L~I~~~~~-~DsG~Y~C~~~N 81 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ-----QKDLLWFLPAAL-EDSGLYTCVVRN 81 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee-----cCCeEEEccCCc-ccCeEEEEEEcC
Confidence 346678999999999988 678899999998654321 122222 234588999998 999999999999
Q ss_pred CCCceEeeEEEEE
Q psy2442 91 GVGDAVSAEASLT 103 (111)
Q Consensus 91 ~~~~~~~~~~~l~ 103 (111)
..|.. +..+.|.
T Consensus 82 ~~g~~-~~~~~L~ 93 (94)
T cd05756 82 STYCM-KVSISLT 93 (94)
T ss_pred CCccE-EEEEEEE
Confidence 88864 6666554
No 65
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.51 E-value=9.3e-13 Score=61.85 Aligned_cols=60 Identities=25% Similarity=0.354 Sum_probs=47.9
Q ss_pred EEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCc
Q psy2442 29 SFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGD 94 (111)
Q Consensus 29 ~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~ 94 (111)
.|.|.+.|.|.|.+.|++++..+.....++.. ....|.|.++.. +|+|.|.|.+.|....
T Consensus 2 ~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~-----~~~~L~I~~v~~-~D~G~YtC~a~~~~~~ 61 (72)
T cd07702 2 RLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHV-----DGYSLVIKDVTE-EDAGIYTILLGIKQYN 61 (72)
T ss_pred eEEeeEEEcCCCeEEEEECCEECCCCCcEEEe-----CCCEEEECcCCH-HHCEEEEEEEEccccc
Confidence 58899999999999999999887643233332 233599999998 9999999999997543
No 66
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.51 E-value=2.1e-12 Score=61.44 Aligned_cols=72 Identities=35% Similarity=0.573 Sum_probs=55.5
Q ss_pred EEEEEEeccCCCeEEEEECCeeccCCC-CceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442 29 SFYCIARGDPIPVIQWRKNGKRVSGTQ-SRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105 (111)
Q Consensus 29 ~l~c~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~ 105 (111)
.|.|.+.+.|.|.+.|++++..+.... .++.... ....|.|..+.. .|.|.|.|.+.|..|.. ...+.|.|.
T Consensus 2 ~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~---~~~~l~I~~~~~-~D~G~Y~C~a~N~~G~~-~~~~~l~V~ 74 (76)
T cd05736 2 SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIA---NGSELHISNVRY-EDTGAYTCIAKNEAGVD-EDISSLFVE 74 (76)
T ss_pred EeEeEeeecCCCEEEEEECCEECCCCCCccEEEeC---CCCEEEECcCCc-ccCEEEEEEEEcCCCCc-ceEEEEEEE
Confidence 689999999999999999998875431 2333321 334589999998 99999999999999875 666666654
No 67
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.51 E-value=1.4e-12 Score=62.26 Aligned_cols=71 Identities=20% Similarity=0.395 Sum_probs=52.5
Q ss_pred EEEEEeccCCCeEEEEECCeeccCCCCceE--EE--eCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEE
Q psy2442 30 FYCIARGDPIPVIQWRKNGKRVSGTQSRYM--VQ--EFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLT 103 (111)
Q Consensus 30 l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~--~~--~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~ 103 (111)
+.|.+.|.|.|.+.|+++|..+... .+.. +. ........|.+..+.. .|.|.|.|.+.|..|.. ...+.+.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~YtC~A~N~~G~~-~~~~~~~ 77 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNES-EYICTKIHVINNTEYHGCLQLDNPTH-LNNGIYTLVAKNEYGED-EKNVSAH 77 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCC-cceeeeeEeecccceEEEEEECCCCc-ccCEEEEEEEEcCCccc-ceEEEee
Confidence 6788999999999999999998643 2221 11 1111234589999998 99999999999999975 6666543
No 68
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.49 E-value=8e-13 Score=63.12 Aligned_cols=67 Identities=22% Similarity=0.429 Sum_probs=52.4
Q ss_pred CeeEEcCcceeeecCCcEEEEEEEeccCCC-eEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442 11 PEITLRPRNQAVKAGGITSFYCIARGDPIP-VIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE 89 (111)
Q Consensus 11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~ 89 (111)
|.+...|....+..|++++|.|.+.+.|.+ .+.|++++..+.. ....|.+.++ . .|+|.|.|.+.
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~------------~~~~l~i~~~-~-~dsG~Y~C~a~ 66 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET------------TTNSYRIRAA-N-NDSGEYRCQTQ 66 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec------------cCCeEEEeec-c-cCCEEeEEECC
Confidence 345566777789999999999999887754 6999999987632 2233777777 7 99999999998
Q ss_pred eC
Q psy2442 90 NG 91 (111)
Q Consensus 90 ~~ 91 (111)
|.
T Consensus 67 ~~ 68 (78)
T cd05752 67 GS 68 (78)
T ss_pred CC
Confidence 75
No 69
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.49 E-value=1.9e-12 Score=63.57 Aligned_cols=78 Identities=28% Similarity=0.425 Sum_probs=53.5
Q ss_pred CCcEEEEEEEeccCCCeEEEEECC----eeccCC-CCceEEEeC------CCCCeEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442 25 GGITSFYCIARGDPIPVIQWRKNG----KRVSGT-QSRYMVQEF------PPGGSLLRIEPVRHARDDAVYECVAENGVG 93 (111)
Q Consensus 25 g~~~~l~c~~~~~~~~~~~w~~~~----~~~~~~-~~~~~~~~~------~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~ 93 (111)
|+.+.|.|.+.+.|.|.+.|++.+ ..+... ......... ......|.|.++.. .|+|.|.|.+.|..|
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~G 79 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSF-DDAGEYTCLAGNSIG 79 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEecccc-ccCcEEEEEeecccC
Confidence 678999999999999999999863 222111 111111110 01223588899998 999999999999999
Q ss_pred ceEeeEEEEEE
Q psy2442 94 DAVSAEASLTV 104 (111)
Q Consensus 94 ~~~~~~~~l~~ 104 (111)
.. .....|.|
T Consensus 80 ~~-~~sa~L~V 89 (90)
T cd04974 80 PS-HHSAWLTV 89 (90)
T ss_pred cc-cCCEEEEe
Confidence 74 66666654
No 70
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.48 E-value=2.7e-12 Score=61.22 Aligned_cols=71 Identities=27% Similarity=0.492 Sum_probs=48.4
Q ss_pred EEEEEEEeccCCCeEEEEECCeeccCC-CCceEEEeCCCCCeEEEEccCCCC---CCCeEEEEEeeeCCCceEeeEEE
Q psy2442 28 TSFYCIARGDPIPVIQWRKNGKRVSGT-QSRYMVQEFPPGGSLLRIEPVRHA---RDDAVYECVAENGVGDAVSAEAS 101 (111)
Q Consensus 28 ~~l~c~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~---~d~g~y~c~~~~~~~~~~~~~~~ 101 (111)
+.|.|.+.|.|.|.+.|++++..+... ..++.... ....|.+..+... .|.|.|.|.+.|..|...+..+.
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~---~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~ 75 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKP---NTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIV 75 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeC---CCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEE
Confidence 468999999999999999999877322 12333322 2344666655420 37899999999999875444443
No 71
>KOG3513|consensus
Probab=99.48 E-value=2.2e-12 Score=84.47 Aligned_cols=98 Identities=32% Similarity=0.606 Sum_probs=82.2
Q ss_pred eeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCC--CceEEEeCCCCCeEEEEccCCCCCC
Q psy2442 3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQ--SRYMVQEFPPGGSLLRIEPVRHARD 80 (111)
Q Consensus 3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~d 80 (111)
.+|.|+.+|++.+.++...+..|+.+.+.|.+.|.|.|.+.|+++|..+.... .++.+. ...|.|.+++. .|
T Consensus 324 ~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~-----~g~L~is~v~~-~d 397 (1051)
T KOG3513|consen 324 GHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKID-----DGTLIISNVQE-SD 397 (1051)
T ss_pred EEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEe-----CCEEEEEeccc-cc
Confidence 57889999999999999999999999999999999999999999999886431 235553 34599999998 99
Q ss_pred CeEEEEEeeeCCCceEeeEEEEEEecC
Q psy2442 81 DAVYECVAENGVGDAVSAEASLTVYEG 107 (111)
Q Consensus 81 ~g~y~c~~~~~~~~~~~~~~~l~~~~~ 107 (111)
+|.|.|.+.|..|.. .....|.|...
T Consensus 398 sg~YQC~A~Nk~G~i-~anA~L~V~a~ 423 (1051)
T KOG3513|consen 398 SGVYQCIAENKYGTI-YANAELKVLAS 423 (1051)
T ss_pred CeEEEeeeecccceE-eeeeEEEEEcc
Confidence 999999999999874 66777776543
No 72
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.47 E-value=2.1e-12 Score=62.14 Aligned_cols=74 Identities=30% Similarity=0.463 Sum_probs=53.4
Q ss_pred CCcEEEEEEEeccCCCeEEEEECCee----ccCCC---CceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEe
Q psy2442 25 GGITSFYCIARGDPIPVIQWRKNGKR----VSGTQ---SRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVS 97 (111)
Q Consensus 25 g~~~~l~c~~~~~~~~~~~w~~~~~~----~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~ 97 (111)
|+.+.|.|.+.+.|.|.+.|++.+.. ..... .++... ....|.|.++.. .|+|.|.|.+.|..|.. .
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~----~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~-~ 74 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVT----NIGQLVIYNAQP-QDAGLYTCTARNSGGLL-R 74 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEc----cccEEEEccCCc-ccCEEEEEEEecCCceE-E
Confidence 67899999999999999999987321 11110 111111 234589999998 99999999999999874 7
Q ss_pred eEEEEEE
Q psy2442 98 AEASLTV 104 (111)
Q Consensus 98 ~~~~l~~ 104 (111)
..+.|.|
T Consensus 75 ~~~~l~v 81 (81)
T cd05765 75 ANFPLSV 81 (81)
T ss_pred EEEEEeC
Confidence 7776653
No 73
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.47 E-value=3.5e-12 Score=62.47 Aligned_cols=82 Identities=22% Similarity=0.304 Sum_probs=59.2
Q ss_pred CcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCC---CceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442 17 PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQ---SRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVG 93 (111)
Q Consensus 17 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~ 93 (111)
++.+.+..|+.+.|.|...+ +.+.+.|++++..+.... .++... ...|.|.++.. .|+|.|.|.+.+..+
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~-----~~~L~I~~~~~-~D~G~Y~C~a~~~~~ 75 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT-----EDGLLIRSVSP-ADAGVYTCQSVEHGF 75 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc-----CCCEEEccCCH-HHCEEEEEEEecCcc
Confidence 34467889999999999876 777999999987764321 233222 22388999998 999999999987655
Q ss_pred ceEeeEEEEEEe
Q psy2442 94 DAVSAEASLTVY 105 (111)
Q Consensus 94 ~~~~~~~~l~~~ 105 (111)
......+.+.|.
T Consensus 76 ~~~~~~~~l~V~ 87 (89)
T cd04979 76 KQTLATYSLNVL 87 (89)
T ss_pred ceeEeEEEEEEe
Confidence 434556666654
No 74
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.47 E-value=6.2e-12 Score=61.83 Aligned_cols=79 Identities=33% Similarity=0.604 Sum_probs=55.4
Q ss_pred CeeEEcCcceeee---cCCcEEEEEEEeccCCCeEEEEECCeeccC-CCCceEEEeCCCCCeEEEEccCC-CCCCCeEEE
Q psy2442 11 PEITLRPRNQAVK---AGGITSFYCIARGDPIPVIQWRKNGKRVSG-TQSRYMVQEFPPGGSLLRIEPVR-HARDDAVYE 85 (111)
Q Consensus 11 p~~~~~~~~~~~~---~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~-~~~d~g~y~ 85 (111)
|.+...+..+.+. .++.+.|.|.+.+.|.+.+.|++++..+.. ...++... ...|.+.++. . .|+|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~-----~~~L~i~~~~~~-~d~G~Y~ 75 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLV-----GGNLVISNPSKA-KDAGRYQ 75 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEE-----CCEEEEecCCcc-CCCEEEE
Confidence 4455555554433 346799999999999999999999988742 22333332 2336776654 4 7999999
Q ss_pred EEeeeCCCce
Q psy2442 86 CVAENGVGDA 95 (111)
Q Consensus 86 c~~~~~~~~~ 95 (111)
|.+.|..|..
T Consensus 76 C~a~N~~G~~ 85 (91)
T cd04967 76 CLASNIVGTV 85 (91)
T ss_pred EEEEcCCCEE
Confidence 9999998864
No 75
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.47 E-value=1.4e-11 Score=61.06 Aligned_cols=90 Identities=27% Similarity=0.383 Sum_probs=65.8
Q ss_pred CCeeEEcCcceeeecCCcEEEEEEEeccCCC-eEEEEECCeeccCC-CCceEEEeCC---CCCeEEEEccCCCCCC-CeE
Q psy2442 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIP-VIQWRKNGKRVSGT-QSRYMVQEFP---PGGSLLRIEPVRHARD-DAV 83 (111)
Q Consensus 10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~-~~~~~~~~~~---~~~~~l~~~~~~~~~d-~g~ 83 (111)
||.+ ..+....+..|+++.|.|.+.+.|.| .+.|...+..+... ..++.+.... +..+.|.|.++.. .| .|.
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~-~d~~g~ 79 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIME-ADFQTH 79 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCcc-ccCCcE
Confidence 4554 56666788899999999999887777 67898887766443 3566655422 2345599999877 67 589
Q ss_pred EEEEeeeCCCceEeeEEEE
Q psy2442 84 YECVAENGVGDAVSAEASL 102 (111)
Q Consensus 84 y~c~~~~~~~~~~~~~~~l 102 (111)
|.|.+.|.+|.. ...+.|
T Consensus 80 Y~C~a~N~~G~d-~~~i~L 97 (98)
T cd05898 80 YNCTAWNSFGSG-TAIIQL 97 (98)
T ss_pred EEEEEEeCCccc-eEEEEe
Confidence 999999999975 555543
No 76
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.47 E-value=2.1e-12 Score=61.89 Aligned_cols=71 Identities=30% Similarity=0.463 Sum_probs=50.3
Q ss_pred EEEEEEEeccCCCeEEEEECCeeccC-------CCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEE
Q psy2442 28 TSFYCIARGDPIPVIQWRKNGKRVSG-------TQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEA 100 (111)
Q Consensus 28 ~~l~c~~~~~~~~~~~w~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~ 100 (111)
++|.|.+.|.|.|.+.|++.+..... ...++... ....|.|..+.. .|+|.|.|.+.|..|...+...
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~----~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~s~~~ 75 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL----SNGSLLIKHVLE-EDSGYYLCKVSNDVGADASKSM 75 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEe----cCCeEEECcCCc-ccCEEEEEEEEeCCCCCCceEE
Confidence 46899999999999999986432110 12333332 234588999998 9999999999999886544454
Q ss_pred EEE
Q psy2442 101 SLT 103 (111)
Q Consensus 101 ~l~ 103 (111)
.|.
T Consensus 76 ~l~ 78 (79)
T cd05734 76 VLT 78 (79)
T ss_pred EEe
Confidence 443
No 77
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.46 E-value=9.3e-12 Score=60.27 Aligned_cols=81 Identities=30% Similarity=0.459 Sum_probs=58.8
Q ss_pred eeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeE
Q psy2442 20 QAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAE 99 (111)
Q Consensus 20 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~ 99 (111)
+.+..|+.+.|.|.+.+.|.+.+.|++++..+... ..+...........|.+.++.. .|.|.|.|.+.|..|.. ...
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~-~d~g~Y~C~~~n~~g~~-~~~ 80 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKE-HRIGGYKVRKKKWTLILESVVP-SDSGKYTCIVENKYGSI-NHT 80 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECccc-CceeEEEccCcEEEEEEeECCc-ccCEEEEEEEEECCceE-EEE
Confidence 45667999999999999888899999998876532 2222111111234588889998 99999999999988864 655
Q ss_pred EEEE
Q psy2442 100 ASLT 103 (111)
Q Consensus 100 ~~l~ 103 (111)
+.|.
T Consensus 81 ~~l~ 84 (85)
T cd05729 81 YKVD 84 (85)
T ss_pred EEEe
Confidence 5553
No 78
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.45 E-value=7.5e-12 Score=61.91 Aligned_cols=72 Identities=18% Similarity=0.393 Sum_probs=54.2
Q ss_pred cceeeecCCcEEEEEEEeccCCCeEEEEECCeecc-------CCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeee
Q psy2442 18 RNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVS-------GTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAEN 90 (111)
Q Consensus 18 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~ 90 (111)
.+..+..|+++.|.|.+.+.+.+.+.|++.+..+. ....++...........|.|.++.. +|.|.|.|.+..
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~-~D~G~YtC~~~t 83 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQL-SDEGEYTCSIFT 83 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCc-ccCEEEEEEEEe
Confidence 45678899999999999999999999998775321 1124444333222335699999999 999999999876
No 79
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.45 E-value=7.7e-12 Score=59.64 Aligned_cols=70 Identities=29% Similarity=0.562 Sum_probs=48.4
Q ss_pred EEEEEEEeccCCCeEEEEECCeecc-CCCCceEEEeCCCCCeEEEEccCC---CCCCCeEEEEEeeeCCCceEeeEE
Q psy2442 28 TSFYCIARGDPIPVIQWRKNGKRVS-GTQSRYMVQEFPPGGSLLRIEPVR---HARDDAVYECVAENGVGDAVSAEA 100 (111)
Q Consensus 28 ~~l~c~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~---~~~d~g~y~c~~~~~~~~~~~~~~ 100 (111)
+.|.|.+.|.|.|.+.|++++..+. ....++.... ....|.+..+. ...|.|.|.|.+.|..|...+..+
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~---~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~ 74 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRR---RSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKI 74 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeC---CCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEE
Confidence 4689999999999999999998763 2224444322 23447776543 203689999999999987544443
No 80
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.45 E-value=3.6e-12 Score=60.80 Aligned_cols=69 Identities=28% Similarity=0.577 Sum_probs=48.8
Q ss_pred EEEEEEEeccCCCeEEEEECCeeccCC-CCceEEEeCCCCCeEEEEccCC----CCCCCeEEEEEeeeCCCceEeeEE
Q psy2442 28 TSFYCIARGDPIPVIQWRKNGKRVSGT-QSRYMVQEFPPGGSLLRIEPVR----HARDDAVYECVAENGVGDAVSAEA 100 (111)
Q Consensus 28 ~~l~c~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~----~~~d~g~y~c~~~~~~~~~~~~~~ 100 (111)
+.|.|.+.|.|.|.+.|++++..+... ..++.... ....|.+..+. . .|+|.|.|.+.|..|...+..+
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~---~~g~L~i~~~~~~~~~-~d~G~Y~C~A~N~~G~~~s~~~ 74 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKP---DSGTLVIDNMNGGRAE-DYEGEYQCYASNELGTAISNEI 74 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeC---CCCEEEEeccCCCCCc-CCCEEEEEEEEcCCCcEEcccc
Confidence 468999999999999999999887432 23333322 23447777653 3 5899999999999987544343
No 81
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.45 E-value=7.1e-12 Score=61.49 Aligned_cols=78 Identities=29% Similarity=0.457 Sum_probs=53.7
Q ss_pred CCcEEEEEEEeccCCCeEEEEEC----CeeccCCC-CceEEEeCC------CCCeEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442 25 GGITSFYCIARGDPIPVIQWRKN----GKRVSGTQ-SRYMVQEFP------PGGSLLRIEPVRHARDDAVYECVAENGVG 93 (111)
Q Consensus 25 g~~~~l~c~~~~~~~~~~~w~~~----~~~~~~~~-~~~~~~~~~------~~~~~l~~~~~~~~~d~g~y~c~~~~~~~ 93 (111)
|+.+.|.|.+.+.|.|.+.|++. +..+.... ......... .....|.|.++.. .|+|.|.|.+.|..|
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~G 79 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTF-EDAGEYTCLAGNSIG 79 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCH-HHCEEEEEEEEeCCC
Confidence 67899999999999999999984 33332111 111111100 0124599999998 999999999999998
Q ss_pred ceEeeEEEEEE
Q psy2442 94 DAVSAEASLTV 104 (111)
Q Consensus 94 ~~~~~~~~l~~ 104 (111)
.. .....|.|
T Consensus 80 ~~-~~~a~L~V 89 (90)
T cd05858 80 IS-HHSAWLTV 89 (90)
T ss_pred cc-cceEEEEE
Confidence 75 56665554
No 82
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.44 E-value=1.1e-11 Score=60.11 Aligned_cols=80 Identities=21% Similarity=0.347 Sum_probs=54.3
Q ss_pred CCcEEEEEEEeccCCCeEEEEECCeeccCCCCc-eEEE-eCCCCCeEEEEccCCCCCCCeEEEEEeeeCCC-ceEeeEEE
Q psy2442 25 GGITSFYCIARGDPIPVIQWRKNGKRVSGTQSR-YMVQ-EFPPGGSLLRIEPVRHARDDAVYECVAENGVG-DAVSAEAS 101 (111)
Q Consensus 25 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~-~~~~~~~~ 101 (111)
|++++|.|.+.+.+.+.+.|+..+......... .... ........|.|.+++. .|+|.|.|.+.|..+ ......+.
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~-~DsG~Y~C~a~n~~~~~~~~~sv~ 79 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATV-EDSGTYECAAHESTQDQKAFKKVN 79 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCc-CCCEEEEEEEEECccCcceeEEEE
Confidence 688999999999888899999876643221111 0111 0011234599999998 999999999998764 22366667
Q ss_pred EEEe
Q psy2442 102 LTVY 105 (111)
Q Consensus 102 l~~~ 105 (111)
|.|.
T Consensus 80 i~V~ 83 (84)
T cd05861 80 ITVH 83 (84)
T ss_pred EEEe
Confidence 7664
No 83
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.44 E-value=5.2e-12 Score=59.86 Aligned_cols=66 Identities=26% Similarity=0.452 Sum_probs=49.6
Q ss_pred EEEEEEEec-cCCCeEEEEECCeeccCCCCc--eEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCce
Q psy2442 28 TSFYCIARG-DPIPVIQWRKNGKRVSGTQSR--YMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDA 95 (111)
Q Consensus 28 ~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~ 95 (111)
+.|.|.+.+ .|.+.+.|++++..+...... +.... ......|.|..+.. .|.|.|.|.+.|..|..
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~-~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~ 69 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRN-KKKNSELQINKAKL-ADSGEYTCVVENILGND 69 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEe-cCceEEEEEccCCc-ccCeEEEEEEEEcCCce
Confidence 468999999 898999999999887643211 11221 11345589999998 99999999999999864
No 84
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.43 E-value=1.1e-11 Score=60.15 Aligned_cols=69 Identities=20% Similarity=0.467 Sum_probs=54.4
Q ss_pred CcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442 17 PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGV 92 (111)
Q Consensus 17 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~ 92 (111)
|....+..|+++.|.|...+ +.+.+.|+++|..+.....++.+. . ..|.|.+++. .|+|.|.|.+.+..
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~----~-~~L~I~nv~~-~DsG~Y~C~a~e~~ 71 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLY----R-DGLLIFNASE-ADAGRYQCLSVEKS 71 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEE----C-CcEEEeCCCH-HHCEEEEEEEEecc
Confidence 45567889999999999754 567899999999987543455443 2 2388999998 99999999998764
No 85
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.43 E-value=7.8e-12 Score=60.71 Aligned_cols=76 Identities=29% Similarity=0.509 Sum_probs=56.8
Q ss_pred EcCcceeeecCCcEEEEEEEec-cCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442 15 LRPRNQAVKAGGITSFYCIARG-DPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVG 93 (111)
Q Consensus 15 ~~~~~~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~ 93 (111)
..+..+.+..|++++|.|...+ .+.+.+.|++.+..+.. +. .. ....|.|..+.. +|+|.|.|.+.|..|
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~---~~--~~---~~~~L~I~~v~~-~DsG~Y~C~a~n~~g 76 (85)
T cd05754 6 EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPS---RA--MD---FNGILTIRNVQL-SDAGTYVCTGSNMLD 76 (85)
T ss_pred cCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCC---cc--cc---cCCEEEECCCCH-HHCEEEEEEEeccCC
Confidence 3455668889999999999864 67779999998765432 11 11 234599999998 999999999999887
Q ss_pred ceEeeEE
Q psy2442 94 DAVSAEA 100 (111)
Q Consensus 94 ~~~~~~~ 100 (111)
.. ....
T Consensus 77 ~~-~~~~ 82 (85)
T cd05754 77 TD-EATA 82 (85)
T ss_pred eE-eEEE
Confidence 64 4433
No 86
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.39 E-value=1.1e-11 Score=59.94 Aligned_cols=73 Identities=23% Similarity=0.312 Sum_probs=53.3
Q ss_pred eeeecCCcEEEEEEEec-cCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEee
Q psy2442 20 QAVKAGGITSFYCIARG-DPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSA 98 (111)
Q Consensus 20 ~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~ 98 (111)
..+.+|+.++|.|.... .+...+.|++++..+... . ....|.|..+.. +|+|.|.|.+.+..+...+.
T Consensus 9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~--~--------~~~~l~I~~~~~-~dsG~Y~C~~~~~~~~~~s~ 77 (83)
T cd05753 9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS--H--------SNSNLSIPQATL-SDSGSYHCSGIIGSYDYSSE 77 (83)
T ss_pred ceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc--C--------CCceEEECccCH-HHCEEEEEEEEeCCceecCC
Confidence 36789999999999754 455579999998765321 0 234488999998 99999999999987643344
Q ss_pred EEEEE
Q psy2442 99 EASLT 103 (111)
Q Consensus 99 ~~~l~ 103 (111)
.+.|.
T Consensus 78 ~~~i~ 82 (83)
T cd05753 78 PVSIT 82 (83)
T ss_pred CEEEE
Confidence 44443
No 87
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.38 E-value=5.5e-11 Score=58.88 Aligned_cols=73 Identities=18% Similarity=0.277 Sum_probs=53.5
Q ss_pred cceeeecCCcEEEEEEEeccCCCeEEEEECCeec-------cCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeee
Q psy2442 18 RNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRV-------SGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAEN 90 (111)
Q Consensus 18 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~ 90 (111)
+++.+.+|+++.|.|...+.+.+.+.|++.+... .....++...........|.|.++.. +|+|.|.|.+..
T Consensus 5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~-~DsG~Y~C~~~t 83 (95)
T cd07701 5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSL-SDEGQYTCSLFT 83 (95)
T ss_pred ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCc-ccCEEEEEEeEe
Confidence 4578899999999999999998999998643221 11224555432222345699999998 999999999887
Q ss_pred C
Q psy2442 91 G 91 (111)
Q Consensus 91 ~ 91 (111)
.
T Consensus 84 ~ 84 (95)
T cd07701 84 M 84 (95)
T ss_pred e
Confidence 4
No 88
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.36 E-value=1.9e-11 Score=59.20 Aligned_cols=78 Identities=23% Similarity=0.354 Sum_probs=53.3
Q ss_pred CCcEEEEEEEecc--CCCeEEEEECCeeccCCCC---ceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeE
Q psy2442 25 GGITSFYCIARGD--PIPVIQWRKNGKRVSGTQS---RYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAE 99 (111)
Q Consensus 25 g~~~~l~c~~~~~--~~~~~~w~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~ 99 (111)
|+++.|.|.+.+. +.+.+.|...+........ +............|.|.+++. .|+|.|.|.+.|..+.. +..
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~-~DsG~Y~C~a~n~~~~~-~~s 78 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATL-KDSGTYTCAASSGTMDQ-KES 78 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCCh-hhCEEEEEEEccCCCce-EEE
Confidence 6789999999998 7779999887665432100 100000001234599999998 99999999999998764 555
Q ss_pred EEEEE
Q psy2442 100 ASLTV 104 (111)
Q Consensus 100 ~~l~~ 104 (111)
..+.+
T Consensus 79 ~~v~v 83 (84)
T cd05742 79 TKVNI 83 (84)
T ss_pred EEEEE
Confidence 55543
No 89
>KOG3513|consensus
Probab=99.35 E-value=2.3e-11 Score=79.83 Aligned_cols=99 Identities=27% Similarity=0.506 Sum_probs=77.0
Q ss_pred ceeEEecC-CCeeEEcCcc--eeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCC
Q psy2442 2 YRKVRFLD-PPEITLRPRN--QAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHA 78 (111)
Q Consensus 2 ~~~l~v~~-~p~~~~~~~~--~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (111)
.|.|.|.. +|.+...+.. +.+..|.++.+.|...+.|.+.+.|.+++..+ ....|+.+. ....|.|.++++
T Consensus 415 nA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~-~~~~r~~i~----edGtL~I~n~t~- 488 (1051)
T KOG3513|consen 415 NAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKL-LQSGRIRIL----EDGTLEISNVTR- 488 (1051)
T ss_pred eeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCccc-ccCceEEEC----CCCcEEecccCc-
Confidence 36677764 4776655433 35668999999999999999999999998843 344777776 345599999999
Q ss_pred CCCeEEEEEeeeCCCceEeeEEEEEEecC
Q psy2442 79 RDDAVYECVAENGVGDAVSAEASLTVYEG 107 (111)
Q Consensus 79 ~d~g~y~c~~~~~~~~~~~~~~~l~~~~~ 107 (111)
.|+|.|.|.+.|.+|.. .....|.|..+
T Consensus 489 ~DaG~YtC~A~N~~G~a-~~~~~L~Vkd~ 516 (1051)
T KOG3513|consen 489 SDAGKYTCVAENKLGKA-ESTGNLIVKDA 516 (1051)
T ss_pred ccCcEEEEEEEcccCcc-ceEEEEEEecC
Confidence 99999999999999985 66677766544
No 90
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.33 E-value=7.8e-11 Score=56.01 Aligned_cols=66 Identities=21% Similarity=0.453 Sum_probs=47.5
Q ss_pred EEEEEEEec-cCCCeEEEEECCeeccCC---CCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCce
Q psy2442 28 TSFYCIARG-DPIPVIQWRKNGKRVSGT---QSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDA 95 (111)
Q Consensus 28 ~~l~c~~~~-~~~~~~~w~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~ 95 (111)
+.|.|.+.+ .|.+.+.|++++..+... ..++.... ......|.|.++.. .|+|.|.|.+.|..|..
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~-~~~~~~L~I~~~~~-~DsG~Y~C~a~N~~g~~ 70 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRK-KKKSSELQISKASL-ADNGEYKCMVSSKLGND 70 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEe-CCcEEEEEECcCCc-ccCEEEEEEEEeCCCce
Confidence 468999764 577799999998887532 12222222 11335589999998 99999999999998863
No 91
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.29 E-value=2.7e-10 Score=56.40 Aligned_cols=74 Identities=18% Similarity=0.362 Sum_probs=52.1
Q ss_pred cceeeecCCcEEEEEEEeccCCCeEEEEECCeec---c----CCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeee
Q psy2442 18 RNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRV---S----GTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAEN 90 (111)
Q Consensus 18 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~---~----~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~ 90 (111)
+.+.+..|++++|.|...+.+.+.+.|++.+... . ....++...........|.|.+++. .|+|.|.|.+.+
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~-~DsG~Y~C~~~~ 83 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSL-SDEGRYTCSLYT 83 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCc-ccCEEEEEEEec
Confidence 4467889999999999988777899998643221 0 1124554432221334589999998 999999999887
Q ss_pred CC
Q psy2442 91 GV 92 (111)
Q Consensus 91 ~~ 92 (111)
..
T Consensus 84 ~~ 85 (95)
T cd05717 84 MP 85 (95)
T ss_pred CC
Confidence 54
No 92
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.28 E-value=1.6e-10 Score=52.46 Aligned_cols=63 Identities=40% Similarity=0.726 Sum_probs=48.0
Q ss_pred cCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442 24 AGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVG 93 (111)
Q Consensus 24 ~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~ 93 (111)
.|+++.|.|...+.+.+.+.|++++..+.. ...... ....|.+.++.. .|.|.|.|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~---~~~~~~---~~~~L~i~~~~~-~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE---SNRLSA---SGSTLTIKSVSL-EDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCC---CCEEec---CCcEEEEeeCCc-ccCEEEEEEEecCCC
Confidence 478899999988888889999998887751 111211 344588999998 999999999987643
No 93
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.27 E-value=4.9e-11 Score=58.73 Aligned_cols=72 Identities=18% Similarity=0.154 Sum_probs=55.9
Q ss_pred CcceeeecCCcEEEEEE-EeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCe-EEEEEeeeCCC
Q psy2442 17 PRNQAVKAGGITSFYCI-ARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDA-VYECVAENGVG 93 (111)
Q Consensus 17 ~~~~~~~~g~~~~l~c~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g-~y~c~~~~~~~ 93 (111)
.+.+.+.+|+.+.|.|. ..+.|.|.+.|+..+......+.|+... ....|.|.++.. .|.| .|.|.+.|...
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~----~~GnL~fs~v~~-~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMG----QNGNLYFANVEE-QDSHPDYICHAHFPGL 83 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEEC----CCceEEEEEEeh-hhCCCCeEEEEEcccc
Confidence 35578889999999997 6899999999998765543334555443 235599999998 9999 79999998753
No 94
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.25 E-value=1.2e-10 Score=57.41 Aligned_cols=72 Identities=21% Similarity=0.248 Sum_probs=53.5
Q ss_pred cceeeecCCcEEEEEE-EeccCCCeEEEEECCeecc-CCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442 18 RNQAVKAGGITSFYCI-ARGDPIPVIQWRKNGKRVS-GTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVG 93 (111)
Q Consensus 18 ~~~~~~~g~~~~l~c~-~~~~~~~~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~ 93 (111)
....+.+|+.+.|.|. ..+.|.+.+.|++++.... ..+.+..... ....|.+.++.. .|+|.|.|.+.|...
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~---~~G~L~fs~v~~-~D~g~Y~C~A~n~~~ 84 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQ---TNGNLYIAKVEA-SDRGNYSCFVSSPSS 84 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeC---CCCcEEEeecCH-hhCceeEEEEEeccc
Confidence 3456888999999997 5677888999999976542 1223333322 234599999998 999999999999764
No 95
>KOG4221|consensus
Probab=99.24 E-value=4.1e-10 Score=74.84 Aligned_cols=101 Identities=29% Similarity=0.491 Sum_probs=73.7
Q ss_pred eeEEecCCC------eeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCC
Q psy2442 3 RKVRFLDPP------EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVR 76 (111)
Q Consensus 3 ~~l~v~~~p------~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 76 (111)
+.|+|...+ .|...+....+..|+.++|.|.+.+.+.|.+.|.+++..+.-.+.++.+. ....|.+.+++
T Consensus 224 a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~----g~~slliS~a~ 299 (1381)
T KOG4221|consen 224 AELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLV----GGSSLLISNAT 299 (1381)
T ss_pred eEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEe----cccceEEeccc
Confidence 455555332 34455666788899999999999999999999999999987654455444 34558899999
Q ss_pred CCCCCeEEEEEeeeCCCceEeeEEEEEEecCCC
Q psy2442 77 HARDDAVYECVAENGVGDAVSAEASLTVYEGEE 109 (111)
Q Consensus 77 ~~~d~g~y~c~~~~~~~~~~~~~~~l~~~~~~~ 109 (111)
. .|+|.|.|.+.|.-.. ......+.|..+|.
T Consensus 300 ~-~dSg~YtC~Atn~~D~-idasaev~V~a~P~ 330 (1381)
T KOG4221|consen 300 D-DDSGKYTCRATNTNDS-IDASAEVTVLAPPG 330 (1381)
T ss_pred c-ccCceEEEEecCCCcc-cccceEEEEEcCCC
Confidence 8 9999999999984332 13444555555553
No 96
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.24 E-value=4.9e-10 Score=53.47 Aligned_cols=79 Identities=34% Similarity=0.648 Sum_probs=55.4
Q ss_pred CeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeee
Q psy2442 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAEN 90 (111)
Q Consensus 11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~ 90 (111)
|.+...+ ..+..|+.+.|.|...+.+...+.|++++..+... ... +.+..+.. .|.|.|.|.+.+
T Consensus 2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~-----------~~~-~~~~~~~~-~~~g~y~C~~~~ 66 (80)
T PF13895_consen 2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS-----------QNG-LFIPNVSP-EDSGNYTCRASN 66 (80)
T ss_dssp -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEE-----------SSE-EEESSEEG-GGTEEEEEEEEE
T ss_pred cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeee-----------eee-eeeeeecc-ccCEEEEEEEEe
Confidence 4444334 45788999999999998888899999987665421 111 55566776 899999999998
Q ss_pred CCCceEeeEEEEEE
Q psy2442 91 GVGDAVSAEASLTV 104 (111)
Q Consensus 91 ~~~~~~~~~~~l~~ 104 (111)
..+...+..+.|.|
T Consensus 67 ~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 67 GSGSNTSTSVNVTV 80 (80)
T ss_dssp TTEEEEEEEEEEEE
T ss_pred CCCCeEeeeEEeeC
Confidence 65443355555543
No 97
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=99.23 E-value=1.6e-09 Score=53.53 Aligned_cols=73 Identities=18% Similarity=0.292 Sum_probs=54.8
Q ss_pred cceeeecCCcEEEEEEEeccCCCeEEEEECCeecc-------CCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeee
Q psy2442 18 RNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVS-------GTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAEN 90 (111)
Q Consensus 18 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~ 90 (111)
+++.+..|+++.|.|.........+.|++.+..+. ....|+......+....|.|..++. .|+|.|.|.+..
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~-~D~G~Y~Cqv~t 83 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSL-SDEGRYFCQLYT 83 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCc-ccCEEEEEEEEc
Confidence 34688899999999999887777788987664431 2346776654333445699999998 999999999875
Q ss_pred C
Q psy2442 91 G 91 (111)
Q Consensus 91 ~ 91 (111)
.
T Consensus 84 ~ 84 (95)
T cd05881 84 D 84 (95)
T ss_pred c
Confidence 3
No 98
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.22 E-value=5.6e-10 Score=54.92 Aligned_cols=73 Identities=23% Similarity=0.339 Sum_probs=53.5
Q ss_pred eeeecCCcEEEEEEEecc-----CCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCc
Q psy2442 20 QAVKAGGITSFYCIARGD-----PIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGD 94 (111)
Q Consensus 20 ~~~~~g~~~~l~c~~~~~-----~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~ 94 (111)
..+..|+...|.|...+. +.|.+.|++++..+.... + ... ....|.|..+.. .|+|.|.|.+.|..+.
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~-~-~~~----~~~~L~I~~v~~-~DsG~YtC~~~n~~~~ 77 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDR-K-RFV----KGSKLLIQNVTE-EDAGNYTCKLTFTHNG 77 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCc-c-EEe----cCCEEEEeeCCh-hhCEEEEEEEEecCCC
Confidence 356689999999986432 467999999999886532 2 221 233489999998 9999999999998765
Q ss_pred eEeeEE
Q psy2442 95 AVSAEA 100 (111)
Q Consensus 95 ~~~~~~ 100 (111)
. ...+
T Consensus 78 ~-~~~~ 82 (92)
T cd05757 78 K-QYNV 82 (92)
T ss_pred E-EEEE
Confidence 3 4443
No 99
>smart00409 IG Immunoglobulin.
Probab=99.20 E-value=7.3e-09 Score=49.59 Aligned_cols=82 Identities=34% Similarity=0.581 Sum_probs=59.3
Q ss_pred ceeeecCCcEEEEEEEeccCCCeEEEEEC-CeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEe
Q psy2442 19 NQAVKAGGITSFYCIARGDPIPVIQWRKN-GKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVS 97 (111)
Q Consensus 19 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~ 97 (111)
.+.+..|+.+.|.|...+.+.+.+.|++. +..+.. ..++...... ....|.+..+.. .|.|.|.|.+.+..+.. .
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~-~~~~~~~~~~-~~~~l~i~~~~~-~d~G~Y~C~v~~~~~~~-~ 78 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAE-SGRFSVSRSG-SNSTLTISNVTP-EDSGTYTCAATNSSGSA-S 78 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCC-CCcEEEEEcC-CeeEEEEEeecc-ccCeEEEEEEEcCCCeE-E
Confidence 35677899999999998887779999998 666542 2444444322 235589999998 99999999999876653 4
Q ss_pred eEEEEEE
Q psy2442 98 AEASLTV 104 (111)
Q Consensus 98 ~~~~l~~ 104 (111)
..+.|.|
T Consensus 79 ~~~~l~V 85 (86)
T smart00409 79 STTTLTV 85 (86)
T ss_pred EEEEEEE
Confidence 4455543
No 100
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.20 E-value=7.3e-09 Score=49.59 Aligned_cols=82 Identities=34% Similarity=0.581 Sum_probs=59.3
Q ss_pred ceeeecCCcEEEEEEEeccCCCeEEEEEC-CeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEe
Q psy2442 19 NQAVKAGGITSFYCIARGDPIPVIQWRKN-GKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVS 97 (111)
Q Consensus 19 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~ 97 (111)
.+.+..|+.+.|.|...+.+.+.+.|++. +..+.. ..++...... ....|.+..+.. .|.|.|.|.+.+..+.. .
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~-~~~~~~~~~~-~~~~l~i~~~~~-~d~G~Y~C~v~~~~~~~-~ 78 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAE-SGRFSVSRSG-SNSTLTISNVTP-EDSGTYTCAATNSSGSA-S 78 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCC-CCcEEEEEcC-CeeEEEEEeecc-ccCeEEEEEEEcCCCeE-E
Confidence 35677899999999998887779999998 666542 2444444322 235589999998 99999999999876653 4
Q ss_pred eEEEEEE
Q psy2442 98 AEASLTV 104 (111)
Q Consensus 98 ~~~~l~~ 104 (111)
..+.|.|
T Consensus 79 ~~~~l~V 85 (86)
T smart00410 79 STTTLTV 85 (86)
T ss_pred EEEEEEE
Confidence 4455543
No 101
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.18 E-value=1.9e-09 Score=52.93 Aligned_cols=79 Identities=20% Similarity=0.311 Sum_probs=52.9
Q ss_pred eeeecCCcEEEEEEEeccCCCeEEEEECCe--eccC---CCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeee-CCC
Q psy2442 20 QAVKAGGITSFYCIARGDPIPVIQWRKNGK--RVSG---TQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAEN-GVG 93 (111)
Q Consensus 20 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~--~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~-~~~ 93 (111)
+....|+++.|.|.. +.|.+.+.|++.+. .... ...++.. ....|.|.++.. .|+|.|.|.+.+ ..+
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~-----~~~~L~I~~~~~-~DsG~Y~C~a~~~~~~ 78 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH-----TERGLLLRSLQR-SDAGVYTCTAVEHSFS 78 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE-----ecCeEEEeeCCh-hHCEEEEEEEEccCCe
Confidence 456789999999996 47778999998432 2111 1123332 223388999998 999999999975 444
Q ss_pred ceEeeEEEEEEec
Q psy2442 94 DAVSAEASLTVYE 106 (111)
Q Consensus 94 ~~~~~~~~l~~~~ 106 (111)
.. ...+.|.|.+
T Consensus 79 ~~-~~~~~l~v~~ 90 (91)
T cd05871 79 QT-LAKYTLHVIE 90 (91)
T ss_pred EE-EEEEEEEEec
Confidence 33 4466666643
No 102
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.14 E-value=5.4e-09 Score=59.39 Aligned_cols=68 Identities=24% Similarity=0.357 Sum_probs=52.5
Q ss_pred eeeecCCcEEEEEEEec-----cCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442 20 QAVKAGGITSFYCIARG-----DPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGV 92 (111)
Q Consensus 20 ~~~~~g~~~~l~c~~~~-----~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~ 92 (111)
..+..|+.+.|.|...+ .|.|.+.|++++..+... .++.... ....|.|.++.. .|+|.|.|.+....
T Consensus 139 ~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~-~r~~~~~---~~~~L~I~~V~~-~DsG~YtC~a~~~~ 211 (227)
T PHA02826 139 YQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYT-DRIQLRN---NNSTLVIKSATH-DDSGIYTCNLRFNK 211 (227)
T ss_pred ceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCC-CCEEEeC---CCCEEEECcCCH-HhCEEEEEEEEEeE
Confidence 45678999999999753 356799999999988643 4554432 334699999998 99999999988753
No 103
>KOG4222|consensus
Probab=99.14 E-value=1.5e-10 Score=76.38 Aligned_cols=101 Identities=34% Similarity=0.573 Sum_probs=83.9
Q ss_pred ceeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCC
Q psy2442 2 YRKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDD 81 (111)
Q Consensus 2 ~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~ 81 (111)
.++|.|+.+|.+...++...+..|..+.++|.+.|.|.|.+.|.+.+..+.. .++.+.. ....+.+.+... .|+
T Consensus 217 ~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~--~ry~i~~---d~qtl~i~r~tp-~de 290 (1281)
T KOG4222|consen 217 PARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPR--SRYSILD---DTQTLRIDRVTP-TDE 290 (1281)
T ss_pred cceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCCCCc--cceeeee---ccccccccccCC-Ccc
Confidence 4789999999999999999999999999999999999999999997777764 4555543 334588888887 999
Q ss_pred eEEEEEeeeCCCceEeeEEEEEEecCCC
Q psy2442 82 AVYECVAENGVGDAVSAEASLTVYEGEE 109 (111)
Q Consensus 82 g~y~c~~~~~~~~~~~~~~~l~~~~~~~ 109 (111)
|.|.|.+.|..|.. ...-.+.|..+|+
T Consensus 291 g~y~C~a~n~vG~l-~asa~ltV~apP~ 317 (1281)
T KOG4222|consen 291 GTYVCPAENLVGGL-EASATLTVQAPPS 317 (1281)
T ss_pred cceeeecccccccc-ccccceEEecCcc
Confidence 99999999998874 6677777777664
No 104
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.13 E-value=1.1e-09 Score=53.97 Aligned_cols=74 Identities=19% Similarity=0.324 Sum_probs=50.4
Q ss_pred eeeecCCcEEEEEEEeccCCCeEEEEECCeec-cCC------------CCceEEEe--CCCCCeEEEEccCCCCCCCeEE
Q psy2442 20 QAVKAGGITSFYCIARGDPIPVIQWRKNGKRV-SGT------------QSRYMVQE--FPPGGSLLRIEPVRHARDDAVY 84 (111)
Q Consensus 20 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~-~~~------------~~~~~~~~--~~~~~~~l~~~~~~~~~d~g~y 84 (111)
+.+..|++++|.|...+.+.+.+.|++.++.. ... ..++.... .......|.|.++.. +|+|.|
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~-sDsgtY 80 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKI-EDSDTY 80 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCH-HHCEEE
Confidence 35678999999999988888899999665322 111 11221111 011224599999998 999999
Q ss_pred EEEeeeCCCc
Q psy2442 85 ECVAENGVGD 94 (111)
Q Consensus 85 ~c~~~~~~~~ 94 (111)
.|.+.|..+.
T Consensus 81 ~C~v~~~~~~ 90 (94)
T cd07690 81 ICEVEDKKEE 90 (94)
T ss_pred EEEECCccce
Confidence 9999886543
No 105
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.12 E-value=2.9e-09 Score=51.78 Aligned_cols=79 Identities=30% Similarity=0.332 Sum_probs=51.3
Q ss_pred CCcEEEEEEEeccCCC--eEEEEECCeeccCC--CC--ceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEee
Q psy2442 25 GGITSFYCIARGDPIP--VIQWRKNGKRVSGT--QS--RYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSA 98 (111)
Q Consensus 25 g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~--~~--~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~ 98 (111)
|+++.|.|.+.+.+.+ .+.|...+...... .. +............|.|.++.. .|+|.|.|.+.|..+.. ..
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~-~DsG~Y~C~a~n~~~~~-~~ 78 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTL-SDLGRYTCTASSGQMIA-KN 78 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCc-ccCEEEEEEEeecceEe-cc
Confidence 6789999999876544 77998776543110 01 111100001234599999998 99999999999987753 55
Q ss_pred EEEEEEe
Q psy2442 99 EASLTVY 105 (111)
Q Consensus 99 ~~~l~~~ 105 (111)
...|.|.
T Consensus 79 ~t~~~V~ 85 (86)
T cd05862 79 STIVIVH 85 (86)
T ss_pred cEEEEEe
Confidence 6666554
No 106
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.09 E-value=4.4e-10 Score=51.57 Aligned_cols=62 Identities=27% Similarity=0.485 Sum_probs=42.8
Q ss_pred CCcEEEEEEE-eccCCCeEEEEECCeeccCCCCceEEEeCCCCC-eEEEEccCCCCCCCeEEEEEe
Q psy2442 25 GGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG-SLLRIEPVRHARDDAVYECVA 88 (111)
Q Consensus 25 g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~d~g~y~c~~ 88 (111)
|+++.|.|.+ .+.+...+.|++++...... ............ ..|.|.++.. .|+|.|.|.+
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEG-STTNRSTNSVSSTSRLTISNVTP-EDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEE-EEEEEEETTTEEEEEEEESSCTG-GGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCc-ceeEeecccceeeeEEEEccCCH-HHCEEEEEEC
Confidence 7889999999 66677799999988765432 111111111011 1289999998 9999999975
No 107
>KOG4194|consensus
Probab=99.06 E-value=1.9e-09 Score=67.95 Aligned_cols=96 Identities=25% Similarity=0.470 Sum_probs=73.2
Q ss_pred ceeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCC-CeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCC
Q psy2442 2 YRKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPI-PVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARD 80 (111)
Q Consensus 2 ~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d 80 (111)
.|.|.|...|.+..+..+..+..|+++.+.|.+.+.+. |.+.|+++++.+.-. ++..... ....+.+.+... .|
T Consensus 698 nAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t-~rh~f~d---~dQllvv~~~~~-~d 772 (873)
T KOG4194|consen 698 NATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILIT-ERHTFPD---GDQLLVVKENLV-ED 772 (873)
T ss_pred ceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCccccccCCCCceEEe-ecccCCC---CCeEEEEEehhh-hh
Confidence 47889999998888888889999999999999999887 899999988876422 2222221 445577777776 99
Q ss_pred CeEEEEEeeeCCCceEeeEEEEE
Q psy2442 81 DAVYECVAENGVGDAVSAEASLT 103 (111)
Q Consensus 81 ~g~y~c~~~~~~~~~~~~~~~l~ 103 (111)
+|.|.|.+.+..|.. ...+.+.
T Consensus 773 aG~yTcem~~~~~~~-~~~i~l~ 794 (873)
T KOG4194|consen 773 AGIYTCEMSNTLGTE-RIHICLL 794 (873)
T ss_pred cceEEEEEEeeccce-eeEEEEE
Confidence 999999999988865 3444333
No 108
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=99.04 E-value=1e-08 Score=52.04 Aligned_cols=75 Identities=20% Similarity=0.331 Sum_probs=52.3
Q ss_pred EcCcceeeecCCcEEEEEEEeccCCCeEEEEECCe--ecc---------------CCCCceEEEeCCCCCeEEEEccCCC
Q psy2442 15 LRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGK--RVS---------------GTQSRYMVQEFPPGGSLLRIEPVRH 77 (111)
Q Consensus 15 ~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~--~~~---------------~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (111)
+.+..+.+.+|++++|.|...+ ....+.|++... .+. ....++...........|.|.+++.
T Consensus 3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~ 81 (110)
T cd05899 3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP 81 (110)
T ss_pred ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh
Confidence 4566678999999999999877 666899998532 110 0113444332222345599999998
Q ss_pred CCCCeEEEEEeeeC
Q psy2442 78 ARDDAVYECVAENG 91 (111)
Q Consensus 78 ~~d~g~y~c~~~~~ 91 (111)
+|+|.|.|.+.+.
T Consensus 82 -~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 82 -EDSAVYLCASSLG 94 (110)
T ss_pred -hhCEEEEEEeeCC
Confidence 9999999998764
No 109
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.03 E-value=8.7e-09 Score=50.87 Aligned_cols=70 Identities=16% Similarity=0.266 Sum_probs=50.7
Q ss_pred eeecCCcEEEEEEE-ec----cCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCc
Q psy2442 21 AVKAGGITSFYCIA-RG----DPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGD 94 (111)
Q Consensus 21 ~~~~g~~~~l~c~~-~~----~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~ 94 (111)
.+..|....+.|+- .+ ...+.+.|++++..+.....++.... ....|.+..+.. +|.|.|.|.+.+..+.
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~---~~~~L~I~~v~~-~D~G~YtC~~~~~~~g 80 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLK---GSTYLHIIDVSL-NDSGYYTCKLQFTHEG 80 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecC---CCCEEEEEEcCh-hhCEEEEEEEEEeeCC
Confidence 45568888999973 22 34568999999998864433433322 234599999998 9999999999997654
No 110
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.01 E-value=6.8e-08 Score=48.01 Aligned_cols=84 Identities=19% Similarity=0.223 Sum_probs=61.5
Q ss_pred ceeeecCCcEEEEEEEeccCCCe-EEEEECCeeccCCCCceEEEeCC---CCCeEEEEccCCCCCCCeEEEEEeeeCCCc
Q psy2442 19 NQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGTQSRYMVQEFP---PGGSLLRIEPVRHARDDAVYECVAENGVGD 94 (111)
Q Consensus 19 ~~~~~~g~~~~l~c~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~ 94 (111)
.+.+..|+.+.|.|.....|.|. +.|.+.+..+............. +..+.|.+.++.. .|.|.|.|.+.|....
T Consensus 12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~-~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKG-TEGGTYTFLVSNSDAS 90 (101)
T ss_pred eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecCh-hhCcEEEEEEECCCCe
Confidence 35788999999999999999996 99998877664332222111110 1224599999998 9999999999998876
Q ss_pred eEeeEEEEEE
Q psy2442 95 AVSAEASLTV 104 (111)
Q Consensus 95 ~~~~~~~l~~ 104 (111)
. +..+.|.+
T Consensus 91 ~-s~tF~l~v 99 (101)
T cd05860 91 A-SVTFNVYV 99 (101)
T ss_pred E-EEEEEEEE
Confidence 4 66666665
No 111
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.00 E-value=7.5e-08 Score=57.64 Aligned_cols=79 Identities=22% Similarity=0.259 Sum_probs=56.1
Q ss_pred EcCcceeeecCCcEEEEEEEeccCCC---eEEEEECCeeccCCC----CceEEEeCC-------CCCeEEEEccCCCCCC
Q psy2442 15 LRPRNQAVKAGGITSFYCIARGDPIP---VIQWRKNGKRVSGTQ----SRYMVQEFP-------PGGSLLRIEPVRHARD 80 (111)
Q Consensus 15 ~~~~~~~~~~g~~~~l~c~~~~~~~~---~~~w~~~~~~~~~~~----~~~~~~~~~-------~~~~~l~~~~~~~~~d 80 (111)
..+....+..|+.+.|.|.+.+.|.+ .+.|.++|..+.... .++...... .....|.|.++.. .|
T Consensus 225 ~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~-~D 303 (326)
T PHA02785 225 QLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKE-ED 303 (326)
T ss_pred cCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcch-hc
Confidence 34556677789999999999987764 799999998774321 122221100 0124589999998 99
Q ss_pred CeEEEEEeeeCCCc
Q psy2442 81 DAVYECVAENGVGD 94 (111)
Q Consensus 81 ~g~y~c~~~~~~~~ 94 (111)
.|.|.|.+.|..+.
T Consensus 304 ~G~Y~C~A~n~~~~ 317 (326)
T PHA02785 304 ATTFTCMAFTIPSI 317 (326)
T ss_pred CeeeEEEEEeccCc
Confidence 99999999997754
No 112
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.99 E-value=1.8e-08 Score=50.97 Aligned_cols=76 Identities=18% Similarity=0.274 Sum_probs=53.5
Q ss_pred EcCcceeeecCCcEEEEEEEeccCCCeEEEEECCee--c----c-------CCCCceEEEeCC-CCCeEEEEccCCCCCC
Q psy2442 15 LRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKR--V----S-------GTQSRYMVQEFP-PGGSLLRIEPVRHARD 80 (111)
Q Consensus 15 ~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~--~----~-------~~~~~~~~~~~~-~~~~~l~~~~~~~~~d 80 (111)
+.+..+.+..|++++|.|.....+...+.|++.... . . ....++.+.... .....|.|.+++. +|
T Consensus 3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~-~D 81 (109)
T cd04983 3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQL-SD 81 (109)
T ss_pred ecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCH-HH
Confidence 455667889999999999988777778999975321 0 0 112455443221 1345599999998 99
Q ss_pred CeEEEEEeeeC
Q psy2442 81 DAVYECVAENG 91 (111)
Q Consensus 81 ~g~y~c~~~~~ 91 (111)
+|.|.|.+.+.
T Consensus 82 sG~Y~C~~~~~ 92 (109)
T cd04983 82 SAVYFCALSES 92 (109)
T ss_pred CEEEEEEEecC
Confidence 99999998864
No 113
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.98 E-value=1.9e-08 Score=50.10 Aligned_cols=78 Identities=21% Similarity=0.248 Sum_probs=52.1
Q ss_pred ceeeecCCcEEEEEEEe-----------ccCCCeEEEEECCeeccCCC------CceEEEeCCCCCeEEEEccCCCCCCC
Q psy2442 19 NQAVKAGGITSFYCIAR-----------GDPIPVIQWRKNGKRVSGTQ------SRYMVQEFPPGGSLLRIEPVRHARDD 81 (111)
Q Consensus 19 ~~~~~~g~~~~l~c~~~-----------~~~~~~~~w~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~d~ 81 (111)
...+.+|+.+.|.|... ......+.|++++....... .|+.. ....|.|.++.. +|+
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~-----~~~~Lwf~Pa~~-eDS 82 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSK-----EEDSIWFRPAEL-QDS 82 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEE-----eCCEEEEEeCCh-hhC
Confidence 35678999999999962 11233789999975543221 13322 334488889998 999
Q ss_pred eEEEEEeeeCCCceEeeEEEEE
Q psy2442 82 AVYECVAENGVGDAVSAEASLT 103 (111)
Q Consensus 82 g~y~c~~~~~~~~~~~~~~~l~ 103 (111)
|.|.|.+.|.... ....+.|.
T Consensus 83 G~Y~C~~rN~t~C-~~~~i~l~ 103 (104)
T cd05896 83 GLYTCVLRNSTYC-MKVSMSLT 103 (104)
T ss_pred eEEEEEECCCCcc-eEEEEEEE
Confidence 9999999987643 24444443
No 114
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.96 E-value=3.8e-08 Score=49.64 Aligned_cols=76 Identities=25% Similarity=0.329 Sum_probs=51.0
Q ss_pred EEcCcceeeecCCcEEEEEEEeccC-CCeEEEEECCe--ec---c--------CCCCceEEEeCCCCCeEEEEccCCCCC
Q psy2442 14 TLRPRNQAVKAGGITSFYCIARGDP-IPVIQWRKNGK--RV---S--------GTQSRYMVQEFPPGGSLLRIEPVRHAR 79 (111)
Q Consensus 14 ~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~~--~~---~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (111)
.+.+..+.+..|++++|.|...+.. ...+.|++... .. . ....++.... ......|.|.+++. +
T Consensus 4 ~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~~~~-~ 81 (106)
T cd04980 4 TQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSG-SGTDFTLTISRVEP-E 81 (106)
T ss_pred EECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEec-cCCEEEEEECCCCh-H
Confidence 4566667889999999999986654 45799987531 11 0 0012343322 11334589999998 9
Q ss_pred CCeEEEEEeeeC
Q psy2442 80 DDAVYECVAENG 91 (111)
Q Consensus 80 d~g~y~c~~~~~ 91 (111)
|+|.|.|.+.+.
T Consensus 82 Dsg~Y~Ca~~~~ 93 (106)
T cd04980 82 DAAVYYCQQYGT 93 (106)
T ss_pred HCEEEEEEEeCC
Confidence 999999998653
No 115
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.93 E-value=3.5e-08 Score=48.50 Aligned_cols=73 Identities=15% Similarity=0.270 Sum_probs=50.3
Q ss_pred CeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeee
Q psy2442 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAEN 90 (111)
Q Consensus 11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~ 90 (111)
|.+...+. ..+..|++++|.|... .+...+.|+++|...... .. ........|.+.++.. +|+|.|.|...+
T Consensus 3 P~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~--~~---~~~~~~~~f~i~~v~~-~~~G~Y~C~~~~ 74 (91)
T cd05751 3 PSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK--KP---PEPQNKAKFFIPSMKR-EHAGRYRCYYRS 74 (91)
T ss_pred CEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc--cc---CCCceeEEEEccCCCh-hHCEEEEEEEEC
Confidence 44444444 3678999999999875 455688899987754321 00 0011334588999998 999999999887
Q ss_pred C
Q psy2442 91 G 91 (111)
Q Consensus 91 ~ 91 (111)
.
T Consensus 75 ~ 75 (91)
T cd05751 75 G 75 (91)
T ss_pred C
Confidence 5
No 116
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.90 E-value=9.8e-08 Score=46.19 Aligned_cols=64 Identities=23% Similarity=0.408 Sum_probs=48.9
Q ss_pred cceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442 18 RNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE 89 (111)
Q Consensus 18 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~ 89 (111)
+...+..|+.+.|.|...+. .+.+.|+.++..+... .++... ... +.|..+.. .|+|.|.|.+.
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~-~r~~~~----~~G-LlI~~~~~-~dsG~Y~C~s~ 67 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQ-FSYRVG----TDG-LLILVTSP-EHSGTYRCYSE 67 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCC-cceEEe----CCC-CEEEECCH-hhCEEEEEEEe
Confidence 34678899999999998775 5599999999987543 454443 222 66788887 99999999975
No 117
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.88 E-value=9e-08 Score=45.77 Aligned_cols=65 Identities=18% Similarity=0.368 Sum_probs=43.3
Q ss_pred EEEEEEEe-ccCCCeEEEEECCeeccCCCCceEEEeCC-CCCeEEEEccCCCCCCCeEEEEEeeeCCCc
Q psy2442 28 TSFYCIAR-GDPIPVIQWRKNGKRVSGTQSRYMVQEFP-PGGSLLRIEPVRHARDDAVYECVAENGVGD 94 (111)
Q Consensus 28 ~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~ 94 (111)
+.|.|... +.|++.+.||+++..+...... ...... ...+.|.+..... .|.+.|.|.+.|..+.
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~-~~~~~~~t~~s~L~~~~~~~-Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQ-QENGKTVSVSNTIRFPVDRK-DDGAILSCEASHPALV 68 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCccc-ccCCceEEEEEEEEEEeeec-cCCcEEEEEEEChhhC
Confidence 67899964 5777899999999998542110 000000 0223477777776 7888999999998754
No 118
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.88 E-value=2.8e-07 Score=46.48 Aligned_cols=80 Identities=23% Similarity=0.355 Sum_probs=51.5
Q ss_pred cCCcEEEEEEEeccC------CCeEEEEECCee-------c-c---------CCCCceEEEeCCCCCeEEEEccCCCCCC
Q psy2442 24 AGGITSFYCIARGDP------IPVIQWRKNGKR-------V-S---------GTQSRYMVQEFPPGGSLLRIEPVRHARD 80 (111)
Q Consensus 24 ~g~~~~l~c~~~~~~------~~~~~w~~~~~~-------~-~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~d 80 (111)
.|++++|.|.....+ ...+.|++.... + . .-..|+...........|.|.+++. .|
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~-~D 79 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRL-ED 79 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCCh-HH
Confidence 478999999876552 346899985311 0 0 0013433322112345599999998 99
Q ss_pred CeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442 81 DAVYECVAENGVGDAVSAEASLTVY 105 (111)
Q Consensus 81 ~g~y~c~~~~~~~~~~~~~~~l~~~ 105 (111)
+|.|.|.+.+..+.. ...+.|.|.
T Consensus 80 sG~Y~C~v~~~~~~~-~~~~~l~v~ 103 (106)
T cd05877 80 YGRYRCEVIDGLEDE-SVVVALRLR 103 (106)
T ss_pred CEEEEEEEEecccce-EEEEEEEEE
Confidence 999999998877653 566666553
No 119
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.84 E-value=7.3e-08 Score=49.38 Aligned_cols=75 Identities=17% Similarity=0.303 Sum_probs=50.8
Q ss_pred EcCcceeeecCCcEEEEEEEec--cCCCeEEEEECC--eecc----------------CCCCceEEEeCCC-CCeEEEEc
Q psy2442 15 LRPRNQAVKAGGITSFYCIARG--DPIPVIQWRKNG--KRVS----------------GTQSRYMVQEFPP-GGSLLRIE 73 (111)
Q Consensus 15 ~~~~~~~~~~g~~~~l~c~~~~--~~~~~~~w~~~~--~~~~----------------~~~~~~~~~~~~~-~~~~l~~~ 73 (111)
+.+..+.+..|++++|.|...+ .+...+.|++.. ..+. ....++....... ....|.|.
T Consensus 3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 82 (116)
T cd04982 3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQ 82 (116)
T ss_pred CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEE
Confidence 3455577889999999999877 566689999852 1110 0123444432221 23458999
Q ss_pred cCCCCCCCeEEEEEeee
Q psy2442 74 PVRHARDDAVYECVAEN 90 (111)
Q Consensus 74 ~~~~~~d~g~y~c~~~~ 90 (111)
+++. .|+|.|.|.+..
T Consensus 83 ~~~~-~Dsg~Y~C~~~~ 98 (116)
T cd04982 83 NLEK-EDSATYYCAYWE 98 (116)
T ss_pred ECCH-HHCEEEEEEEec
Confidence 9998 999999998764
No 120
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.84 E-value=2e-08 Score=47.17 Aligned_cols=73 Identities=27% Similarity=0.551 Sum_probs=45.1
Q ss_pred CeeEEcCcceeeecCCcEEEEEEEeccC-CCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442 11 PEITLRPRNQAVKAGGITSFYCIARGDP-IPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE 89 (111)
Q Consensus 11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~ 89 (111)
|.+...+.......+. +.|.|.+.+.+ .+.+.|+ ........ ....... ....|.+..+.. .|.|.|.|.+.
T Consensus 2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~~-~~~~~~~---~~~~L~i~~v~~-~~~g~y~C~a~ 74 (75)
T PF13927_consen 2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFNS-NSRGSSS---SNSTLTISNVTR-SDNGTYTCIAS 74 (75)
T ss_dssp SEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEEE-EEEEEEE---EEEEEEESSCCG-GGTEEEEEEEE
T ss_pred CEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCceee-eeeeccc---eeeEEEEccCCH-HhCcEEEEEEE
Confidence 5555555543333333 99999998877 6689999 11111000 0101111 345588999998 99999999987
Q ss_pred e
Q psy2442 90 N 90 (111)
Q Consensus 90 ~ 90 (111)
|
T Consensus 75 N 75 (75)
T PF13927_consen 75 N 75 (75)
T ss_dssp E
T ss_pred C
Confidence 6
No 121
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.83 E-value=1e-07 Score=46.78 Aligned_cols=73 Identities=16% Similarity=0.177 Sum_probs=48.5
Q ss_pred CCcEEEEEEEeccCCCeEEEEECCeeccC-----------------CCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEE
Q psy2442 25 GGITSFYCIARGDPIPVIQWRKNGKRVSG-----------------TQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECV 87 (111)
Q Consensus 25 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~-----------------~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~ 87 (111)
|++++|.|.........+.|++....... -..|+... ....|.|.++.. .|+|.|.|.
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~----~~~sL~I~~l~~-~DsG~Y~c~ 75 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIY----PNGSLLIQNLTK-EDSGTYTLQ 75 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEc----CCceEEEccCCc-hhcEEEEEE
Confidence 68899999877655558899876432210 01233332 225599999998 999999999
Q ss_pred eeeCCCceEeeEEEE
Q psy2442 88 AENGVGDAVSAEASL 102 (111)
Q Consensus 88 ~~~~~~~~~~~~~~l 102 (111)
+....+......+.|
T Consensus 76 v~~~~~~~~~~~~~l 90 (92)
T cd05741 76 IISTNGVTENAKFFL 90 (92)
T ss_pred EEcCCCcEEEEEEEE
Confidence 988765443445444
No 122
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.81 E-value=3.4e-07 Score=46.14 Aligned_cols=79 Identities=15% Similarity=0.121 Sum_probs=50.3
Q ss_pred ceeeecCCcEEEEEEEeccCCCeEEEEECCeec---------cC---------CCCceEEEeCCCCCeEEEEccCCCCCC
Q psy2442 19 NQAVKAGGITSFYCIARGDPIPVIQWRKNGKRV---------SG---------TQSRYMVQEFPPGGSLLRIEPVRHARD 80 (111)
Q Consensus 19 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~---------~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~d 80 (111)
...+..|+.+.|.|.........+.|+++.... .. ...|..+. ....|.|.++.. .|
T Consensus 7 p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~----~ngSL~I~~v~~-~D 81 (105)
T cd05774 7 PPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIY----PNGSLLIQNVTQ-KD 81 (105)
T ss_pred CCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEe----CCCcEEEecCCc-cc
Confidence 346778999999997655444488999863211 00 11233322 223489999998 99
Q ss_pred CeEEEEEeeeCCCceEeeEEEE
Q psy2442 81 DAVYECVAENGVGDAVSAEASL 102 (111)
Q Consensus 81 ~g~y~c~~~~~~~~~~~~~~~l 102 (111)
.|.|.|.+.+.-.......+.+
T Consensus 82 ~G~Y~~~v~~~~~~~~~~~v~l 103 (105)
T cd05774 82 TGFYTLQTITTNFQVEQATVHL 103 (105)
T ss_pred CEEEEEEEEeCCccEEEEEEEE
Confidence 9999999988653322444433
No 123
>PHA02785 IL-beta-binding protein; Provisional
Probab=98.81 E-value=1.2e-07 Score=56.75 Aligned_cols=76 Identities=22% Similarity=0.300 Sum_probs=53.8
Q ss_pred eeecCCcEEEEEEE-----eccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCce
Q psy2442 21 AVKAGGITSFYCIA-----RGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDA 95 (111)
Q Consensus 21 ~~~~g~~~~l~c~~-----~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~ 95 (111)
-+..|+.+.+.|.. .+.|.+.+.|++++... .+..... ....+.+.++.. +|+|.|.|.+.|..+..
T Consensus 37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~----~~~~~~~---~g~~l~i~~~~~-~DsG~Y~C~a~N~~g~~ 108 (326)
T PHA02785 37 MELENEPVILPCPQINTLSSGYNILDILWEKRGADN----DRIIPID---NGSNMLILNPTQ-SDSGIYICITKNETYCD 108 (326)
T ss_pred hhhcCCCEEEECCCccccccCCCCceEEEEECCCcc----ceEEEcc---CCceEEEcccCc-ccCeEEEEEEECCCcce
Confidence 45679999999996 57777899999987532 1211111 223366788887 99999999999987753
Q ss_pred EeeEEEEEEe
Q psy2442 96 VSAEASLTVY 105 (111)
Q Consensus 96 ~~~~~~l~~~ 105 (111)
...+.|.|.
T Consensus 109 -~~s~~L~V~ 117 (326)
T PHA02785 109 -MMSLNLTIV 117 (326)
T ss_pred -EEEEEEEEE
Confidence 556666554
No 124
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.81 E-value=4.6e-07 Score=46.17 Aligned_cols=80 Identities=21% Similarity=0.373 Sum_probs=50.8
Q ss_pred cCCcEEEEEEEeccC------------CCeEEEEECCe--ec------------c-CCCCceEEEeC--CCCCeEEEEcc
Q psy2442 24 AGGITSFYCIARGDP------------IPVIQWRKNGK--RV------------S-GTQSRYMVQEF--PPGGSLLRIEP 74 (111)
Q Consensus 24 ~g~~~~l~c~~~~~~------------~~~~~w~~~~~--~~------------~-~~~~~~~~~~~--~~~~~~l~~~~ 74 (111)
.|++++|.|...... .+.+.|++... .. . .-..|+.+... ......|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 378999999876432 35889997521 10 0 00124444321 11345699999
Q ss_pred CCCCCCCeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442 75 VRHARDDAVYECVAENGVGDAVSAEASLTVY 105 (111)
Q Consensus 75 ~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~ 105 (111)
+.. +|+|.|.|.+.+..... ...+.|.|.
T Consensus 81 l~~-sDsG~Y~C~V~~g~~~~-~~~v~l~v~ 109 (112)
T cd05900 81 LRS-NDSGTYRCEVMHGIEDN-YDTVEVQVK 109 (112)
T ss_pred ccc-ccCEEEEEEEecCCCCc-eeEEEEEEE
Confidence 998 99999999998766543 555555554
No 125
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.80 E-value=1.9e-07 Score=53.21 Aligned_cols=87 Identities=17% Similarity=0.211 Sum_probs=57.1
Q ss_pred cceeeecCCcEEEEEEEecc-----------CCCeEEEEECCeec--cCCCCc--eE-EEeC--CCCCeEEEEccCCCCC
Q psy2442 18 RNQAVKAGGITSFYCIARGD-----------PIPVIQWRKNGKRV--SGTQSR--YM-VQEF--PPGGSLLRIEPVRHAR 79 (111)
Q Consensus 18 ~~~~~~~g~~~~l~c~~~~~-----------~~~~~~w~~~~~~~--~~~~~~--~~-~~~~--~~~~~~l~~~~~~~~~ 79 (111)
..+.+.+|+.+.|.|.+.+. ..+.+.|++.+... .....+ .. +... ......|.|.++.. .
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~-~ 108 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVIN-I 108 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCCh-H
Confidence 34677899999999997653 34588999987542 111111 00 0000 00234599999998 9
Q ss_pred CCeEEEEEeeeCCCceEeeEEEEEEec
Q psy2442 80 DDAVYECVAENGVGDAVSAEASLTVYE 106 (111)
Q Consensus 80 d~g~y~c~~~~~~~~~~~~~~~l~~~~ 106 (111)
|+|.|.|.+.|..+.. ...+.|.|..
T Consensus 109 DsG~Y~C~a~N~~~~~-~~~i~L~V~~ 134 (227)
T PHA02826 109 DEGIYICTISSGNICE-ESTIRLTFDS 134 (227)
T ss_pred HCEEEEEEEEECCcce-EEEEEEEEec
Confidence 9999999999977653 6666666643
No 126
>KOG4222|consensus
Probab=98.79 E-value=3.2e-08 Score=65.95 Aligned_cols=93 Identities=32% Similarity=0.527 Sum_probs=70.5
Q ss_pred eeEEcCcceeeecCCcEEEEEE-EeccCCCeEEEEECCeeccCCC-CceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442 12 EITLRPRNQAVKAGGITSFYCI-ARGDPIPVIQWRKNGKRVSGTQ-SRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE 89 (111)
Q Consensus 12 ~~~~~~~~~~~~~g~~~~l~c~-~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~ 89 (111)
.+...+..+.+..|..+++.|. ..+.+.+.+.|.++|..+.-.. ..+.+. +...|.|.++.+ .|.|.|.|.+.
T Consensus 133 dfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~li----sgG~LlIsnvrk-sD~GtY~CVat 207 (1281)
T KOG4222|consen 133 DFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALI----SGGNLLISNVRK-SDEGTYACVAT 207 (1281)
T ss_pred hcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEe----cCCcEEEecccc-CCCceeeeeec
Confidence 3344556667788999999998 4678888999999999886222 333333 445589999999 99999999999
Q ss_pred eCCCceEeeEEEEEEecCCC
Q psy2442 90 NGVGDAVSAEASLTVYEGEE 109 (111)
Q Consensus 90 ~~~~~~~~~~~~l~~~~~~~ 109 (111)
|..|...+..-.+++.+.|.
T Consensus 208 NmvG~ReS~~A~lsv~e~P~ 227 (1281)
T KOG4222|consen 208 NMVGERESIPARLSVQEKPW 227 (1281)
T ss_pred ccccccccccceeeeccCCc
Confidence 99987556677787777663
No 127
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.78 E-value=3.7e-07 Score=43.90 Aligned_cols=63 Identities=27% Similarity=0.473 Sum_probs=39.8
Q ss_pred EEEEEEEec-cCCCeEEEEECCeeccCCCCceEEEeCCCC----CeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442 28 TSFYCIARG-DPIPVIQWRKNGKRVSGTQSRYMVQEFPPG----GSLLRIEPVRHARDDAVYECVAENGV 92 (111)
Q Consensus 28 ~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~d~g~y~c~~~~~~ 92 (111)
+.|.|.+.+ .|.+.+.|++++..+........... ++. .+.|.+..... .|.+.|.|.+.|..
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~-~~~~~y~C~a~n~~ 69 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLK-DGKRETTVSTLPITPSDH-DTGRTFTCRARNEA 69 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEec-CCCeEEEEEEEEEeCcee-cCCCEEEEEEcCcc
Confidence 578999987 57779999999987753211111111 101 12355655554 57789999998864
No 128
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.78 E-value=2.6e-07 Score=45.95 Aligned_cols=68 Identities=18% Similarity=0.321 Sum_probs=45.9
Q ss_pred eeecCCcEEEEEEEecc--CCCeEEEEECCe--ecc-----------CCCCceEEEeCCCCCeEEEEccCCCCCCCeEEE
Q psy2442 21 AVKAGGITSFYCIARGD--PIPVIQWRKNGK--RVS-----------GTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYE 85 (111)
Q Consensus 21 ~~~~g~~~~l~c~~~~~--~~~~~~w~~~~~--~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~ 85 (111)
.+..|++++|.|..... ....+.|++... .+. ....++...... ....|.|.+++. +|+|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~-~~~~L~I~~~~~-~Dsg~Y~ 79 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSG-NTASLTISGAQT-EDEADYY 79 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccC-CEEEEEECCCCh-hhCEEEE
Confidence 46789999999997664 445799987532 111 001244433222 345589999998 9999999
Q ss_pred EEeee
Q psy2442 86 CVAEN 90 (111)
Q Consensus 86 c~~~~ 90 (111)
|.+.+
T Consensus 80 C~~~~ 84 (98)
T cd04984 80 CQVWD 84 (98)
T ss_pred EEEcc
Confidence 99865
No 129
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.76 E-value=4.2e-07 Score=43.84 Aligned_cols=74 Identities=14% Similarity=0.355 Sum_probs=49.8
Q ss_pred eeecCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEee
Q psy2442 21 AVKAGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSA 98 (111)
Q Consensus 21 ~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~ 98 (111)
.+..|++++|.|.....+.| .+.|...+...-.... .....|.+..+.. .|+|.+.|.+....... ..
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~--------~~~ktL~~~qv~~-qdSG~WtC~V~~~~k~~-~~ 79 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILN--------QDKKTLNLVQLGP-NDSGTWDCIVSVNSSEK-TL 79 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCccceecc--------CCccEEEeceeCc-ccCCEEEEEEEECceEE-EE
Confidence 57789999999998654444 8999876554211100 0445588899998 99999999997653222 44
Q ss_pred EEEEEE
Q psy2442 99 EASLTV 104 (111)
Q Consensus 99 ~~~l~~ 104 (111)
.+.+.|
T Consensus 80 ~~~V~V 85 (88)
T cd07694 80 KLDIKV 85 (88)
T ss_pred EeeEEE
Confidence 445544
No 130
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.75 E-value=1.3e-06 Score=44.10 Aligned_cols=80 Identities=28% Similarity=0.422 Sum_probs=50.5
Q ss_pred cCCcEEEEEEEeccC------CCeEEEEECC-----ee-c-c-CC---------CCceEEEeCCCCCeEEEEccCCCCCC
Q psy2442 24 AGGITSFYCIARGDP------IPVIQWRKNG-----KR-V-S-GT---------QSRYMVQEFPPGGSLLRIEPVRHARD 80 (111)
Q Consensus 24 ~g~~~~l~c~~~~~~------~~~~~w~~~~-----~~-~-~-~~---------~~~~~~~~~~~~~~~l~~~~~~~~~d 80 (111)
.|+.++|.|.....+ ...+.|++.. .. + . .. ..+............|.|.+++. .|
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~-sD 79 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRL-ED 79 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCH-HH
Confidence 488999999976543 4588999862 10 0 0 00 01111111112345599999998 99
Q ss_pred CeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442 81 DAVYECVAENGVGDAVSAEASLTVY 105 (111)
Q Consensus 81 ~g~y~c~~~~~~~~~~~~~~~l~~~ 105 (111)
+|.|.|.+.+..+.. ...+.|.|.
T Consensus 80 ~G~Y~C~v~~~~~~~-~~~v~L~V~ 103 (106)
T cd05714 80 SGRYRCEVIDGIEDE-QDTVELEVR 103 (106)
T ss_pred CEEEEEEEEcCCCce-EEEEEEEEE
Confidence 999999999875543 666666654
No 131
>KOG4221|consensus
Probab=98.73 E-value=5.3e-07 Score=60.88 Aligned_cols=85 Identities=27% Similarity=0.518 Sum_probs=68.1
Q ss_pred eeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCe
Q psy2442 3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDA 82 (111)
Q Consensus 3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g 82 (111)
+.|.+...+.+...+....+..|+++.|.|.+.+.+-+.+.|.++...+... .++... -...|.|..+.. +|.|
T Consensus 133 a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~-~r~i~l----psG~L~I~~~qp-~d~g 206 (1381)
T KOG4221|consen 133 AKVALAGLADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLD-SRVIVL----PSGALEISGLQP-SDTG 206 (1381)
T ss_pred EEEEecccCccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCC-CcEEEc----CCCcEEeccccc-CCCc
Confidence 4556666677777777778999999999999999888899999999877654 355544 334489999998 9999
Q ss_pred EEEEEeeeCCC
Q psy2442 83 VYECVAENGVG 93 (111)
Q Consensus 83 ~y~c~~~~~~~ 93 (111)
.|.|.+.+..-
T Consensus 207 ~yrc~vt~g~~ 217 (1381)
T KOG4221|consen 207 EYRCVVTGGAS 217 (1381)
T ss_pred eEEEEEecCCc
Confidence 99999988653
No 132
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.73 E-value=2e-07 Score=46.32 Aligned_cols=78 Identities=18% Similarity=0.235 Sum_probs=51.1
Q ss_pred ecCCcEEEEEEEec-cCCCeEEEEECCeecc--C-----C-----C----CceEEEeCCCCCeEEEEccCCCCCCCeEEE
Q psy2442 23 KAGGITSFYCIARG-DPIPVIQWRKNGKRVS--G-----T-----Q----SRYMVQEFPPGGSLLRIEPVRHARDDAVYE 85 (111)
Q Consensus 23 ~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~--~-----~-----~----~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~ 85 (111)
..|++++|.|.... .....+.|++...... . . . .|+.+ ......|.|.+++. +|+|.|.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~---~~~~~sL~I~~~~~-~DsG~Y~ 77 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNF---SQNDYSLQISNLKM-EDAGSYR 77 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEe---cCCceeEEECCCch-HHCEEEE
Confidence 36899999998754 3344788987643221 0 0 0 12222 11335599999998 9999999
Q ss_pred EEeeeCCCceEeeEEEEEE
Q psy2442 86 CVAENGVGDAVSAEASLTV 104 (111)
Q Consensus 86 c~~~~~~~~~~~~~~~l~~ 104 (111)
|.+....+......+.|.|
T Consensus 78 c~v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 78 AEINTKNGVTITKEFTLHI 96 (97)
T ss_pred EEEEcCCCCeEEEEEEEEe
Confidence 9998876654566666655
No 133
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.71 E-value=1.3e-06 Score=43.27 Aligned_cols=77 Identities=18% Similarity=0.230 Sum_probs=47.0
Q ss_pred CcEEEEEEEeccC---CCeEEEEECCee-------c--------cC-CCCceEEEeCCCCCeEEEEccCCCCCCCeEEEE
Q psy2442 26 GITSFYCIARGDP---IPVIQWRKNGKR-------V--------SG-TQSRYMVQEFPPGGSLLRIEPVRHARDDAVYEC 86 (111)
Q Consensus 26 ~~~~l~c~~~~~~---~~~~~w~~~~~~-------~--------~~-~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c 86 (111)
++++|.|...... ...+.|++.... . .. ...|..+.........|.|.++.. .|+|.|.|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~-~D~G~Y~C 79 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRL-EDEGNYIC 79 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCc-ccCEEEEE
Confidence 4678999876644 236889885431 0 00 012222222111234599999998 99999999
Q ss_pred Eeee-CCCceEeeEEEEEE
Q psy2442 87 VAEN-GVGDAVSAEASLTV 104 (111)
Q Consensus 87 ~~~~-~~~~~~~~~~~l~~ 104 (111)
.+.. ..|. ....+.|.|
T Consensus 80 ~v~~~~~g~-~~~~~~l~V 97 (98)
T cd05718 80 EFATFPQGN-RQKVTTLTV 97 (98)
T ss_pred EEEeCCCCc-EEEEEEEEe
Confidence 9875 4555 366666655
No 134
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.71 E-value=3.3e-07 Score=46.01 Aligned_cols=71 Identities=21% Similarity=0.345 Sum_probs=48.1
Q ss_pred eeecCCcEEEEEEEecc-CCCeEEEEECCee--cc--------------CCCCceEEEeCCC-CCeEEEEccCCCCCCCe
Q psy2442 21 AVKAGGITSFYCIARGD-PIPVIQWRKNGKR--VS--------------GTQSRYMVQEFPP-GGSLLRIEPVRHARDDA 82 (111)
Q Consensus 21 ~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~~--~~--------------~~~~~~~~~~~~~-~~~~l~~~~~~~~~d~g 82 (111)
.+..|++++|.|..... ....+.|++.... .. ....++....... ....|.|.+++. .|+|
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~-~D~G 80 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQP-EDSA 80 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCH-HHCE
Confidence 46789999999998876 5568999985331 00 0123443332211 234589999998 9999
Q ss_pred EEEEEeeeCC
Q psy2442 83 VYECVAENGV 92 (111)
Q Consensus 83 ~y~c~~~~~~ 92 (111)
.|.|.+.+..
T Consensus 81 ~Y~C~v~~~~ 90 (105)
T cd00099 81 VYYCAVSLSG 90 (105)
T ss_pred EEEEEEecCC
Confidence 9999988754
No 135
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.69 E-value=9.5e-07 Score=42.44 Aligned_cols=78 Identities=18% Similarity=0.279 Sum_probs=46.3
Q ss_pred EEEEEEEec-cCCCeEEEEECCeeccCCCCceEEE-eCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442 28 TSFYCIARG-DPIPVIQWRKNGKRVSGTQSRYMVQ-EFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105 (111)
Q Consensus 28 ~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~ 105 (111)
+.|.|.+.+ .|.+.+.|++++..+.......... ......+.|.+..-.. .|...|.|.+.|..-........|.|.
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~e-DdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKE-DDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchh-hCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 578999766 5666999999999886431110000 0000223366655543 455579999998653334556666665
Q ss_pred c
Q psy2442 106 E 106 (111)
Q Consensus 106 ~ 106 (111)
+
T Consensus 81 y 81 (82)
T cd05883 81 Y 81 (82)
T ss_pred E
Confidence 3
No 136
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.68 E-value=3.9e-06 Score=43.09 Aligned_cols=75 Identities=15% Similarity=0.212 Sum_probs=48.4
Q ss_pred cceeeecCCcEEEEEEEeccC----CCeEEEEE---------------CCeeccCC----CCceEEEeCC-CCCeEEEEc
Q psy2442 18 RNQAVKAGGITSFYCIARGDP----IPVIQWRK---------------NGKRVSGT----QSRYMVQEFP-PGGSLLRIE 73 (111)
Q Consensus 18 ~~~~~~~g~~~~l~c~~~~~~----~~~~~w~~---------------~~~~~~~~----~~~~~~~~~~-~~~~~l~~~ 73 (111)
..+.+..|+.+.|.|...... ...+.|.. +|...... ..|..+.... .....+.|.
T Consensus 6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~ 85 (116)
T cd05879 6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH 85 (116)
T ss_pred ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence 346788999999999986533 23788932 22222101 1244333211 133558999
Q ss_pred cCCCCCCCeEEEEEeeeCCC
Q psy2442 74 PVRHARDDAVYECVAENGVG 93 (111)
Q Consensus 74 ~~~~~~d~g~y~c~~~~~~~ 93 (111)
+++. +|.|.|.|.+.|.-+
T Consensus 86 nv~~-sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 86 NLDY-TDNGTFTCDVKNPPD 104 (116)
T ss_pred cCCc-ccCEEEEEEEEcCCC
Confidence 9998 999999999998654
No 137
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.65 E-value=2.8e-06 Score=44.93 Aligned_cols=48 Identities=13% Similarity=0.265 Sum_probs=36.9
Q ss_pred eeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCC--eEEEEECCee
Q psy2442 3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIP--VIQWRKNGKR 50 (111)
Q Consensus 3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~ 50 (111)
.+|.|..+|.+...+.......|+.+.|.|.+.+..++ .+.|++++..
T Consensus 31 ~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~ 80 (139)
T cd05771 31 IQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG 80 (139)
T ss_pred EEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence 56788888888766655555578899999999986443 7899998754
No 138
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.64 E-value=1e-06 Score=45.16 Aligned_cols=76 Identities=22% Similarity=0.282 Sum_probs=51.0
Q ss_pred EEcCcceeeecCCcEEEEEEEecc-CCCeEEEEECCe--ec---c--------CCCCceEEEeC-CCCCeEEEEccCCCC
Q psy2442 14 TLRPRNQAVKAGGITSFYCIARGD-PIPVIQWRKNGK--RV---S--------GTQSRYMVQEF-PPGGSLLRIEPVRHA 78 (111)
Q Consensus 14 ~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~--~~---~--------~~~~~~~~~~~-~~~~~~l~~~~~~~~ 78 (111)
.+.+..+.+..|++++|.|..... ....+.|++... .+ . ....|+..... ......|.|.++..
T Consensus 3 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~- 81 (116)
T cd07706 3 TQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQL- 81 (116)
T ss_pred EEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCH-
Confidence 355666789999999999987653 345789997421 10 0 11245554321 11334589999998
Q ss_pred CCCeEEEEEeee
Q psy2442 79 RDDAVYECVAEN 90 (111)
Q Consensus 79 ~d~g~y~c~~~~ 90 (111)
+|+|.|.|.+..
T Consensus 82 ~Dsg~Y~C~~~~ 93 (116)
T cd07706 82 EDSAKYFCALST 93 (116)
T ss_pred HHCEEEEEEEEC
Confidence 999999999875
No 139
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.60 E-value=1.3e-06 Score=43.17 Aligned_cols=74 Identities=15% Similarity=0.237 Sum_probs=47.0
Q ss_pred CeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE 89 (111)
Q Consensus 11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~ 89 (111)
|.+...+. ..+..|++++|.|.... ..-.+.|++.+...... .............|.|..++. .|+|.|.|...
T Consensus 2 P~l~a~p~-~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~--~~~~~~~~~~~a~f~I~~~~~-~~~G~Y~C~~~ 75 (94)
T cd05711 2 PFLSAHPS-PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVL--HLYEKHHGGFQASFPLGPVTP-AHAGTYRCYGS 75 (94)
T ss_pred CEEEecCC-CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCce--ecccccCCeEEEEEEecCCCc-ccCEEEEEEEE
Confidence 44444443 47789999999997655 44478899987653210 000000000223488999998 99999999864
No 140
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.57 E-value=2.9e-06 Score=42.91 Aligned_cols=69 Identities=20% Similarity=0.348 Sum_probs=44.7
Q ss_pred eeecCCcEEEEEEEecc-CCCeEEEEECCee-----c------cC----------CCCceEEEe-CCCCCeEEEEccCCC
Q psy2442 21 AVKAGGITSFYCIARGD-PIPVIQWRKNGKR-----V------SG----------TQSRYMVQE-FPPGGSLLRIEPVRH 77 (111)
Q Consensus 21 ~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~~-----~------~~----------~~~~~~~~~-~~~~~~~l~~~~~~~ 77 (111)
.+..|++++|.|..... ....+.|++.... + .. ...++.... .......|.|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 57789999999998653 3347999975332 0 00 012343321 111234589999998
Q ss_pred CCCCeEEEEEeee
Q psy2442 78 ARDDAVYECVAEN 90 (111)
Q Consensus 78 ~~d~g~y~c~~~~ 90 (111)
+|+|.|.|...+
T Consensus 82 -~Dsg~YyCa~~~ 93 (107)
T cd07700 82 -EDSGTYFCMTVG 93 (107)
T ss_pred -HHCEEEEEeEcC
Confidence 999999998753
No 141
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.57 E-value=8.3e-06 Score=41.48 Aligned_cols=80 Identities=28% Similarity=0.431 Sum_probs=50.2
Q ss_pred cCCcEEEEEEEeccC----------CCeEEEEECC--eecc-----C--------CCCceEEEe--CCCCCeEEEEccCC
Q psy2442 24 AGGITSFYCIARGDP----------IPVIQWRKNG--KRVS-----G--------TQSRYMVQE--FPPGGSLLRIEPVR 76 (111)
Q Consensus 24 ~g~~~~l~c~~~~~~----------~~~~~w~~~~--~~~~-----~--------~~~~~~~~~--~~~~~~~l~~~~~~ 76 (111)
.|++++|.|.....+ ...+.|++.. .... . -..|+.+.. .......|.|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 378999999986543 2468999852 1110 0 012333321 11234559999999
Q ss_pred CCCCCeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442 77 HARDDAVYECVAENGVGDAVSAEASLTVY 105 (111)
Q Consensus 77 ~~~d~g~y~c~~~~~~~~~~~~~~~l~~~ 105 (111)
. +|+|.|.|.+....... ...+.|.|.
T Consensus 81 ~-sD~G~Y~C~v~~~~~~~-~~~v~l~V~ 107 (110)
T cd05878 81 S-SDSGVYRCEVMHGIEDE-QDTVPLEVT 107 (110)
T ss_pred h-hhCEEEEEEEEeCCCcc-eEEEEEEEE
Confidence 8 99999999998755443 566666654
No 142
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.56 E-value=4.6e-06 Score=41.42 Aligned_cols=78 Identities=22% Similarity=0.318 Sum_probs=47.3
Q ss_pred CCcEEEEEEEeccCCC-eEEEEECCee----c---cC---------CCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEE
Q psy2442 25 GGITSFYCIARGDPIP-VIQWRKNGKR----V---SG---------TQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECV 87 (111)
Q Consensus 25 g~~~~l~c~~~~~~~~-~~~w~~~~~~----~---~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~ 87 (111)
|++++|.|........ .+.|++.... + .. -..++...........|.|.++.. +|+|.|.|.
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~-~D~G~Y~C~ 79 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTL-EDEGCYKCI 79 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCce-eeeEEEEEE
Confidence 6789999986544332 5889874221 0 00 012222222222345599999998 999999999
Q ss_pred eee-CCCceEeeEEEEEE
Q psy2442 88 AEN-GVGDAVSAEASLTV 104 (111)
Q Consensus 88 ~~~-~~~~~~~~~~~l~~ 104 (111)
... +.|. .+..+.|.|
T Consensus 80 ~~~~p~g~-~~~~~~L~v 96 (97)
T cd05846 80 FNTFPDGS-KSGTMCLTV 96 (97)
T ss_pred EEeCCCCC-eeeEEEEEE
Confidence 875 4454 466666655
No 143
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.55 E-value=1e-05 Score=41.51 Aligned_cols=76 Identities=16% Similarity=0.258 Sum_probs=47.1
Q ss_pred CcceeeecCCcEEEEEEEeccC----CCeEEEEECCe------ec--c-C------CC----CceEEEeCC-CCCeEEEE
Q psy2442 17 PRNQAVKAGGITSFYCIARGDP----IPVIQWRKNGK------RV--S-G------TQ----SRYMVQEFP-PGGSLLRI 72 (111)
Q Consensus 17 ~~~~~~~~g~~~~l~c~~~~~~----~~~~~w~~~~~------~~--~-~------~~----~~~~~~~~~-~~~~~l~~ 72 (111)
+..+.+..|+.++|.|...... ...+.|++... .+ . . .. .|+.+.... .....|.|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 4456788999999999876432 13688975321 10 0 0 01 122222111 12245899
Q ss_pred ccCCCCCCCeEEEEEeeeCCC
Q psy2442 73 EPVRHARDDAVYECVAENGVG 93 (111)
Q Consensus 73 ~~~~~~~d~g~y~c~~~~~~~ 93 (111)
.+++. +|+|.|.|.+.|.-.
T Consensus 85 ~~v~~-~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 85 HNLQF-TDNGTYTCDVKNPPD 104 (116)
T ss_pred eeCCc-ccCEEEEEEEEeCCC
Confidence 99998 999999999987543
No 144
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.54 E-value=7.6e-06 Score=40.76 Aligned_cols=78 Identities=22% Similarity=0.281 Sum_probs=47.1
Q ss_pred CCcEEEEEEEeccC---CCeEEEEECCeec-----------cC-----CCCceEEEeC--CCCCeEEEEccCCCCCCCeE
Q psy2442 25 GGITSFYCIARGDP---IPVIQWRKNGKRV-----------SG-----TQSRYMVQEF--PPGGSLLRIEPVRHARDDAV 83 (111)
Q Consensus 25 g~~~~l~c~~~~~~---~~~~~w~~~~~~~-----------~~-----~~~~~~~~~~--~~~~~~l~~~~~~~~~d~g~ 83 (111)
|++++|.|...... ...+.|++..... .. -..|+..... ......|.|.+++. .|+|.
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~-~D~G~ 79 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRA-SDEGL 79 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCCh-hhCEE
Confidence 67889999875322 1257787754211 00 0123333211 11235599999998 99999
Q ss_pred EEEEeeeCCCceEeeEEEEEE
Q psy2442 84 YECVAENGVGDAVSAEASLTV 104 (111)
Q Consensus 84 y~c~~~~~~~~~~~~~~~l~~ 104 (111)
|.|.+.+..+. ....+.|.|
T Consensus 80 Y~C~v~~~~~~-~~~~i~l~v 99 (100)
T cd05713 80 YTCFFQSDGFY-EEATVELKV 99 (100)
T ss_pred EEEEEecCCcE-EEEEEEEEE
Confidence 99999886654 366666654
No 145
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.50 E-value=5.1e-06 Score=42.01 Aligned_cols=76 Identities=14% Similarity=0.278 Sum_probs=50.6
Q ss_pred EcCcceeeecCCcEEEEEEEe-ccCCCeEEEEECCe-----ecc-------------CCCCceEEEeCC-CCCeEEEEcc
Q psy2442 15 LRPRNQAVKAGGITSFYCIAR-GDPIPVIQWRKNGK-----RVS-------------GTQSRYMVQEFP-PGGSLLRIEP 74 (111)
Q Consensus 15 ~~~~~~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~-----~~~-------------~~~~~~~~~~~~-~~~~~l~~~~ 74 (111)
..+..+.+..|+++.|.|... ......+.|++... .+. ....++.+.... .....|.|.+
T Consensus 6 ~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~ 85 (114)
T PF07686_consen 6 QPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKN 85 (114)
T ss_dssp EEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESS
T ss_pred EeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECC
Confidence 345567889999999999988 44555889987322 110 012233333221 1234599999
Q ss_pred CCCCCCCeEEEEEeeeC
Q psy2442 75 VRHARDDAVYECVAENG 91 (111)
Q Consensus 75 ~~~~~d~g~y~c~~~~~ 91 (111)
+.. .|+|.|.|.+...
T Consensus 86 l~~-~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 86 LQP-SDSGTYFCQVSTS 101 (114)
T ss_dssp ESG-GGEEEEEEEEEES
T ss_pred CCc-CcCEEEEEEEEEC
Confidence 998 9999999998876
No 146
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.46 E-value=7.7e-06 Score=42.16 Aligned_cols=75 Identities=19% Similarity=0.143 Sum_probs=48.0
Q ss_pred cCcceeeecCCcEEEEEEEeccC------CCeEEEEECCeec--------cC--------CCCceEEEeC-CCCCeEEEE
Q psy2442 16 RPRNQAVKAGGITSFYCIARGDP------IPVIQWRKNGKRV--------SG--------TQSRYMVQEF-PPGGSLLRI 72 (111)
Q Consensus 16 ~~~~~~~~~g~~~~l~c~~~~~~------~~~~~w~~~~~~~--------~~--------~~~~~~~~~~-~~~~~~l~~ 72 (111)
.|..+.+..|+.++|.|...... ...+.|++..... .. -..|+..... ......|.|
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I 84 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI 84 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence 45567889999999999764321 2368999753210 00 0124444211 113345899
Q ss_pred ccCCCCCCCeEEEEEeeeC
Q psy2442 73 EPVRHARDDAVYECVAENG 91 (111)
Q Consensus 73 ~~~~~~~d~g~y~c~~~~~ 91 (111)
.+++. +|+|.|.|.+...
T Consensus 85 ~~l~~-~Dsg~Y~C~~~~~ 102 (119)
T cd05712 85 SDAQP-EDSGKYFFRVELG 102 (119)
T ss_pred ccCCh-hhCeEEEEEEEcC
Confidence 99998 9999999988653
No 147
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.43 E-value=9.3e-06 Score=40.31 Aligned_cols=71 Identities=20% Similarity=0.253 Sum_probs=46.8
Q ss_pred eeeecCCcEEEEEEEec-cCCCeEEEEECCeec------------cCCCCceEEEeCC-CCCeEEEEccCCCCCCCeEEE
Q psy2442 20 QAVKAGGITSFYCIARG-DPIPVIQWRKNGKRV------------SGTQSRYMVQEFP-PGGSLLRIEPVRHARDDAVYE 85 (111)
Q Consensus 20 ~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~------------~~~~~~~~~~~~~-~~~~~l~~~~~~~~~d~g~y~ 85 (111)
+.+..|++++|.|.... .....+.|++..... .....++.+.... .....|.|.++.. +|+|.|.
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-~DsG~Y~ 80 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRK-EDAGWYW 80 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCH-HHCEEEE
Confidence 35778999999998765 234578898764211 0112344443221 2334589999998 9999999
Q ss_pred EEeeeC
Q psy2442 86 CVAENG 91 (111)
Q Consensus 86 c~~~~~ 91 (111)
|.+...
T Consensus 81 C~~~~~ 86 (98)
T cd05716 81 CGVGDD 86 (98)
T ss_pred EEcccC
Confidence 987664
No 148
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.41 E-value=4e-06 Score=42.20 Aligned_cols=68 Identities=13% Similarity=0.272 Sum_probs=44.4
Q ss_pred eeecCCcEEEEEEEeccCCCeEEEEECCee----c------cCC-----------CCceEEEeCCCCCeEEEEccCCCCC
Q psy2442 21 AVKAGGITSFYCIARGDPIPVIQWRKNGKR----V------SGT-----------QSRYMVQEFPPGGSLLRIEPVRHAR 79 (111)
Q Consensus 21 ~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~----~------~~~-----------~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (111)
.+..|++++|.|.........+.|++.... + ... ..++.... +.....|.|.+++. +
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~-~~~~~~L~I~~~~~-s 79 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSR-SSNSFVLTLKNFQK-E 79 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEe-cCCEEEEEECCCCH-H
Confidence 367899999999876554557899975422 1 000 12232222 11334589999998 9
Q ss_pred CCeEEEEEeee
Q psy2442 80 DDAVYECVAEN 90 (111)
Q Consensus 80 d~g~y~c~~~~ 90 (111)
|+|.|.|.+.+
T Consensus 80 DsgtY~Ca~~~ 90 (104)
T cd05720 80 NEGYYFCSVAS 90 (104)
T ss_pred HCEEEEEEEcc
Confidence 99999998753
No 149
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.39 E-value=1.3e-05 Score=40.06 Aligned_cols=75 Identities=13% Similarity=0.167 Sum_probs=46.4
Q ss_pred cCcceeeecCCcEEEEEEEec-cCCCe--EEEEECCeeccCCCCceEEE--eCCCCCeEEEEccCCCCCCCe-EEEEEee
Q psy2442 16 RPRNQAVKAGGITSFYCIARG-DPIPV--IQWRKNGKRVSGTQSRYMVQ--EFPPGGSLLRIEPVRHARDDA-VYECVAE 89 (111)
Q Consensus 16 ~~~~~~~~~g~~~~l~c~~~~-~~~~~--~~w~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~d~g-~y~c~~~ 89 (111)
.+....+.+|+.++|.|.+.+ .|.+. +.|++++..+... .+... ........+.+... + .|.| .|.|.+.
T Consensus 7 ~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~--~~~~~~~~~~~~~stlt~~~~-r-~D~g~~~sC~A~ 82 (100)
T cd05755 7 SPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQ--PFGDNTKSPVNAPATITITVD-R-EDHGANFSCETE 82 (100)
T ss_pred ecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccc--eeccccCCCceeEEEEEEecc-h-hhCCcEEEEEEE
Confidence 333345679999999999877 45555 6999999988542 11110 00002233555433 4 5666 8999999
Q ss_pred eCCCc
Q psy2442 90 NGVGD 94 (111)
Q Consensus 90 ~~~~~ 94 (111)
+.+..
T Consensus 83 l~l~~ 87 (100)
T cd05755 83 LDLRP 87 (100)
T ss_pred eccCc
Confidence 87643
No 150
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.37 E-value=2.1e-05 Score=40.36 Aligned_cols=76 Identities=17% Similarity=0.283 Sum_probs=47.2
Q ss_pred CcceeeecCCcEEEEEEEeccC----CCeEEEEEC----Cee--c---cC-----CC----CceEEEeC-CCCCeEEEEc
Q psy2442 17 PRNQAVKAGGITSFYCIARGDP----IPVIQWRKN----GKR--V---SG-----TQ----SRYMVQEF-PPGGSLLRIE 73 (111)
Q Consensus 17 ~~~~~~~~g~~~~l~c~~~~~~----~~~~~w~~~----~~~--~---~~-----~~----~~~~~~~~-~~~~~~l~~~ 73 (111)
+..+.+..|++++|.|.....+ ...+.|+.. +.. + .. .. .|+.+... ......|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 4557888999999999975432 236899742 111 1 00 01 12222111 1123449999
Q ss_pred cCCCCCCCeEEEEEeeeCCC
Q psy2442 74 PVRHARDDAVYECVAENGVG 93 (111)
Q Consensus 74 ~~~~~~d~g~y~c~~~~~~~ 93 (111)
+++. .|+|.|.|.+.|.-.
T Consensus 85 ~v~~-~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 85 QLQP-TDNGTYTCQVKNPPD 103 (115)
T ss_pred eCCh-hhCEEEEEEEEeCCC
Confidence 9998 999999999998654
No 151
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.33 E-value=6.4e-06 Score=40.57 Aligned_cols=70 Identities=26% Similarity=0.434 Sum_probs=43.2
Q ss_pred ecCCcEEEEEEEecc-CC-CeEEEEECCeeccCCCCceEEEeCCCCC----eEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442 23 KAGGITSFYCIARGD-PI-PVIQWRKNGKRVSGTQSRYMVQEFPPGG----SLLRIEPVRHARDDAVYECVAENGVG 93 (111)
Q Consensus 23 ~~g~~~~l~c~~~~~-~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~d~g~y~c~~~~~~~ 93 (111)
..|+.+.|.|.+.+. |. ..+.|+++|..+.............+.. ..|.+..... .+.+.|.|.+.+...
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~-~~~~~y~C~v~h~~~ 86 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDW-NSGDTYTCVVTHESL 86 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHh-CCCCCEEEEEEeCCC
Confidence 468899999999997 43 4799999988875432101111111011 2244444433 488999999988653
No 152
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.30 E-value=4.7e-05 Score=37.51 Aligned_cols=67 Identities=19% Similarity=0.214 Sum_probs=39.0
Q ss_pred CCcEEEEEEEeccCCC--eEEEEECCeeccCCCCceEEE-eCCCCCeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442 25 GGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYMVQ-EFPPGGSLLRIEPVRHARDDAVYECVAENGV 92 (111)
Q Consensus 25 g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~ 92 (111)
++.+.|.|.+.+..++ .+.|++++............. ..++.........+.. .+...|.|.+.+..
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~-~~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPP-EDKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECC-CCCCEEEEEEEeCC
Confidence 6789999999996554 789999986332111100111 1111111122334555 67789999988754
No 153
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.25 E-value=6.6e-05 Score=37.26 Aligned_cols=77 Identities=19% Similarity=0.312 Sum_probs=46.8
Q ss_pred CcEEEEEEEeccCC-CeEEEEECCe----ecc------------CCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442 26 GITSFYCIARGDPI-PVIQWRKNGK----RVS------------GTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA 88 (111)
Q Consensus 26 ~~~~l~c~~~~~~~-~~~~w~~~~~----~~~------------~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~ 88 (111)
+.++|.|....... ..+.|.+... .+. .-..|..+.........+.|.++.. .|+|.|.|.+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~-~D~G~Y~C~v 79 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGF-SDIGVYICKA 79 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCc-cccEEEEEEE
Confidence 35788888754332 2678876421 110 0012333322122345599999998 9999999998
Q ss_pred ee-CCCceEeeEEEEEE
Q psy2442 89 EN-GVGDAVSAEASLTV 104 (111)
Q Consensus 89 ~~-~~~~~~~~~~~l~~ 104 (111)
.. +.|. .+....|.|
T Consensus 80 ~tfP~G~-~~~~~~l~~ 95 (96)
T cd05887 80 VTFPLGN-TQSSTTVTV 95 (96)
T ss_pred EeCCCCC-eeEEEEEEE
Confidence 76 5665 477777765
No 154
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.25 E-value=8.9e-05 Score=40.85 Aligned_cols=85 Identities=18% Similarity=0.228 Sum_probs=54.4
Q ss_pred eeeecCCcEEEEEEEe-ccCCCeEEEEECCeecc----------C-CCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEE
Q psy2442 20 QAVKAGGITSFYCIAR-GDPIPVIQWRKNGKRVS----------G-TQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECV 87 (111)
Q Consensus 20 ~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~----------~-~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~ 87 (111)
+.+.+|+.++|.|... +...+.+.|++....+. . -..|+...........+.|.++.. .|+|.|.|.
T Consensus 25 v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~-sDeGcY~C~ 103 (189)
T PHA02987 25 ITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSL-KDNGCYTCI 103 (189)
T ss_pred EEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCCh-hhCeEEEEE
Confidence 5688999999999974 55566899998633221 0 012443222222345599999998 999999998
Q ss_pred eee-CCCceEeeEEEEEEe
Q psy2442 88 AEN-GVGDAVSAEASLTVY 105 (111)
Q Consensus 88 ~~~-~~~~~~~~~~~l~~~ 105 (111)
..- +.|...+....|.|.
T Consensus 104 F~tfp~G~~~~gt~CLtVt 122 (189)
T PHA02987 104 FNTLLSKNNEKGVVCLNVT 122 (189)
T ss_pred EEecCCCCCceeEEEEEEE
Confidence 765 445223555555544
No 155
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.22 E-value=4.1e-05 Score=39.38 Aligned_cols=73 Identities=19% Similarity=0.331 Sum_probs=46.5
Q ss_pred CcceeeecCCcEEEEEEEeccC--CCeEEEEECCe--ec------cC----------CCCceEEEeCC-CCCeEEEEccC
Q psy2442 17 PRNQAVKAGGITSFYCIARGDP--IPVIQWRKNGK--RV------SG----------TQSRYMVQEFP-PGGSLLRIEPV 75 (111)
Q Consensus 17 ~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~--~~------~~----------~~~~~~~~~~~-~~~~~l~~~~~ 75 (111)
+..+.+..|++++|.|...... ...+.|++... .+ .. ...++...... .....|.|.++
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 83 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL 83 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence 4456788999999999875433 34689987422 11 00 01234333211 12235899999
Q ss_pred CCCCCCeEEEEEeee
Q psy2442 76 RHARDDAVYECVAEN 90 (111)
Q Consensus 76 ~~~~d~g~y~c~~~~ 90 (111)
.. +|+|.|.|....
T Consensus 84 ~~-~Dsa~YyCa~~~ 97 (117)
T cd04981 84 TP-EDTAVYYCARGL 97 (117)
T ss_pred CH-HHCEEEEEEEEc
Confidence 98 999999998754
No 156
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.21 E-value=9.1e-05 Score=37.00 Aligned_cols=36 Identities=28% Similarity=0.425 Sum_probs=27.9
Q ss_pred CeEEEEccCCCCCCCeEEEEEeee-CCCceEeeEEEEEE
Q psy2442 67 GSLLRIEPVRHARDDAVYECVAEN-GVGDAVSAEASLTV 104 (111)
Q Consensus 67 ~~~l~~~~~~~~~d~g~y~c~~~~-~~~~~~~~~~~l~~ 104 (111)
...|.|.++.. +|+|.|.|.+.+ +.|. .+..+.|.|
T Consensus 63 ~~sL~I~nv~~-sD~GtY~C~v~~~p~g~-~~~~~~L~V 99 (100)
T cd05888 63 DGALILRNAVQ-ADEGKYKCRVITFPAGN-FEAELVLTV 99 (100)
T ss_pred ceEEEEecCcc-ccceEEEEEEEeCCCCC-eeeEEEEEe
Confidence 34599999998 999999999987 4555 366666655
No 157
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.20 E-value=7.7e-05 Score=35.86 Aligned_cols=63 Identities=24% Similarity=0.384 Sum_probs=37.0
Q ss_pred EEEEEEEecc-CCCeEEEEECCeeccCCCCceEEEeCCCC----CeEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442 28 TSFYCIARGD-PIPVIQWRKNGKRVSGTQSRYMVQEFPPG----GSLLRIEPVRHARDDAVYECVAENGVG 93 (111)
Q Consensus 28 ~~l~c~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~d~g~y~c~~~~~~~ 93 (111)
+.|.|.+.+. |.+.+.|++++..+... . ......... ...+.+..... .+.+.|.|.+.+...
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~-~-~~~~~~~~~~~~~~s~l~~~~~~~-d~g~~~~C~v~h~~l 69 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGV-K-LKEEDENGKTFTVTSSLRFQVDRE-DDGAPIICRVDHPAL 69 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCc-e-eeEecCCCCEEEEEEEEEEEcchh-hCCCEEEEEEeChhc
Confidence 5789998765 67799999999887532 1 111111101 11233333332 344689999998653
No 158
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.18 E-value=0.00012 Score=37.27 Aligned_cols=79 Identities=24% Similarity=0.386 Sum_probs=48.5
Q ss_pred CCcEEEEEEEeccC-------CCeEEEEECC-----eec----c---------CCCCceEEEeCC--CCCeEEEEccCCC
Q psy2442 25 GGITSFYCIARGDP-------IPVIQWRKNG-----KRV----S---------GTQSRYMVQEFP--PGGSLLRIEPVRH 77 (111)
Q Consensus 25 g~~~~l~c~~~~~~-------~~~~~w~~~~-----~~~----~---------~~~~~~~~~~~~--~~~~~l~~~~~~~ 77 (111)
|.++.|.|.....| .+.+.|.+.. ... . .-..|..+...+ .....|.|.++..
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 67888999854322 3578898641 111 0 012344443211 1345699999998
Q ss_pred CCCCeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442 78 ARDDAVYECVAENGVGDAVSAEASLTVY 105 (111)
Q Consensus 78 ~~d~g~y~c~~~~~~~~~~~~~~~l~~~ 105 (111)
+|+|.|.|.+...... ....+.|.|.
T Consensus 82 -~D~G~Y~C~v~~g~~~-~~~~v~L~V~ 107 (110)
T cd05902 82 -SDSGTYRCEVVLGIND-EQDTVPLEVT 107 (110)
T ss_pred -HHCEEEEEEEEECCcc-cEEEEEEEEE
Confidence 9999999999885544 3666666654
No 159
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.16 E-value=0.00012 Score=36.55 Aligned_cols=36 Identities=22% Similarity=0.433 Sum_probs=29.1
Q ss_pred CeEEEEccCCCCCCCeEEEEEeee-CCCceEeeEEEEEE
Q psy2442 67 GSLLRIEPVRHARDDAVYECVAEN-GVGDAVSAEASLTV 104 (111)
Q Consensus 67 ~~~l~~~~~~~~~d~g~y~c~~~~-~~~~~~~~~~~l~~ 104 (111)
...+.|.++.. .|+|.|.|.+.+ +.|. .+..+.|.|
T Consensus 62 daSi~i~nl~~-~D~G~Y~C~v~t~P~g~-~~~~~~L~V 98 (99)
T cd05886 62 DGTISLSRLEL-EDEGVYICEFATFPTGN-RESQLNLTV 98 (99)
T ss_pred cceEEEcCCcc-ccCEEEEEEEEeCCCCC-eEEEEEEEE
Confidence 35589999998 999999999999 5665 477777765
No 160
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.09 E-value=0.00021 Score=36.77 Aligned_cols=38 Identities=34% Similarity=0.559 Sum_probs=29.5
Q ss_pred CCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442 66 GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105 (111)
Q Consensus 66 ~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~ 105 (111)
....|.|.++.. +|.|.|.|.+.+..... ...+.|.|.
T Consensus 77 g~asL~i~~v~~-sD~G~Y~C~V~~g~~~~-~~~v~L~V~ 114 (117)
T cd05901 77 GDASLTIVKLRA-SDAGVYRCEVMHGIEDT-QDTVSLDVS 114 (117)
T ss_pred CceEEEEccccc-ccCEEEEEEEEECCccc-EEEEEEEEE
Confidence 345699999998 99999999998876653 566666654
No 161
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=98.08 E-value=0.00017 Score=35.59 Aligned_cols=67 Identities=18% Similarity=0.233 Sum_probs=40.0
Q ss_pred ecCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCceEEEeCCCCC-eEEEEccCCCCCCCeEEEEEeeeC
Q psy2442 23 KAGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYMVQEFPPGG-SLLRIEPVRHARDDAVYECVAENG 91 (111)
Q Consensus 23 ~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~d~g~y~c~~~~~ 91 (111)
..|+..+|.|.+.+..++ .+.|.++|..+. .........+.+.. .......+.. .+...|.|.+...
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~-~~~~~ysC~V~H~ 82 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTP-TKGDEYACRVRHN 82 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECC-CCCCeEEEEEEEC
Confidence 456677999999997665 579999999875 21111111111111 1122223445 6677899998774
No 162
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.02 E-value=0.00022 Score=34.43 Aligned_cols=63 Identities=25% Similarity=0.442 Sum_probs=38.1
Q ss_pred EEEEEEEecc-CCCeEEEEECCeeccCCCCceEEEeCCCCC-----eEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442 28 TSFYCIARGD-PIPVIQWRKNGKRVSGTQSRYMVQEFPPGG-----SLLRIEPVRHARDDAVYECVAENGVG 93 (111)
Q Consensus 28 ~~l~c~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~d~g~y~c~~~~~~~ 93 (111)
+.|.|.+.+. |.+.+.|+++|..+.... . ......... ..+.+..... .+...|.|.+.+...
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~-~-~~~~~~~~~t~~~~s~l~~~~~~~-d~g~~~tC~v~h~~l 70 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAP-T-SVLEDGNGKTFTVSSSVEFQVTRE-DDGAEITCSVGHESL 70 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcc-e-eEEECCCCCEEEEEEEEEEEecch-hCCCEEEEEEECccc
Confidence 5789998775 667999999998875421 1 111111111 2233333333 455789999998653
No 163
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.01 E-value=8.9e-05 Score=33.50 Aligned_cols=63 Identities=35% Similarity=0.613 Sum_probs=40.6
Q ss_pred EEEEEEeccCCCeEEEEECCeeccCCCCc--eEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442 29 SFYCIARGDPIPVIQWRKNGKRVSGTQSR--YMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGV 92 (111)
Q Consensus 29 ~l~c~~~~~~~~~~~w~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~ 92 (111)
.+.|...+.+...+.|++.+......... ............+.+..+.. .|.|.|.|.+.+..
T Consensus 2 ~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~C~~~~~~ 66 (74)
T cd00096 2 TLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTL-EDSGTYTCVASNSA 66 (74)
T ss_pred EEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCc-ccCcEEEEEEecCc
Confidence 67899888666689999987765422110 00000001334488888887 89999999987754
No 164
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.97 E-value=0.0002 Score=34.84 Aligned_cols=68 Identities=22% Similarity=0.344 Sum_probs=38.5
Q ss_pred CCcEEEEEEE-eccCCCeEEEEECCeeccCCCCceEEEeCCC---CCeEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442 25 GGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQSRYMVQEFPP---GGSLLRIEPVRHARDDAVYECVAENGVG 93 (111)
Q Consensus 25 g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~d~g~y~c~~~~~~~ 93 (111)
|+.+.+.|.+ .+.|.+.+.|+.++................+ ..+.|.+..-.. .+...+.|.+.+..-
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~-~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTRE-DHGKTLTCRASHPAL 85 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGG-GTTEEEEEEEEETTC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChH-HCCeEEEEEEECCcc
Confidence 6799999975 5577789999998877621100111111110 112355544332 355679999988653
No 165
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.93 E-value=0.00027 Score=34.15 Aligned_cols=63 Identities=21% Similarity=0.332 Sum_probs=36.3
Q ss_pred EEEEEEEec-cCCCeEEEEECCeeccCCCCceEEEeCCC----CCeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442 28 TSFYCIARG-DPIPVIQWRKNGKRVSGTQSRYMVQEFPP----GGSLLRIEPVRHARDDAVYECVAENGV 92 (111)
Q Consensus 28 ~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~d~g~y~c~~~~~~ 92 (111)
++|.|.+.+ .|...+.|+++|..+... .........+ ....+.+..... .+...|.|.+.+..
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~-~~~~~~~~~~~t~~~~s~L~~~~~~~-d~g~~ytC~v~h~~ 69 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDV-KYLKEEDANRKTFTVSSTLDFRVDRS-DDGVAIICRVDHES 69 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCc-eeeEeeCCCCCEEEEEEEEEEEcccc-cCCCEEEEEEechh
Confidence 578999887 455589999999987532 1111111110 112244443333 34568999998854
No 166
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.93 E-value=0.00015 Score=34.35 Aligned_cols=59 Identities=19% Similarity=0.384 Sum_probs=35.2
Q ss_pred EEEEEEEeccCCC--eEEEEECCe--e---cc------------CCCCceEEEeCC-CCCeEEEEccCCCCCCCeEEEEE
Q psy2442 28 TSFYCIARGDPIP--VIQWRKNGK--R---VS------------GTQSRYMVQEFP-PGGSLLRIEPVRHARDDAVYECV 87 (111)
Q Consensus 28 ~~l~c~~~~~~~~--~~~w~~~~~--~---~~------------~~~~~~~~~~~~-~~~~~l~~~~~~~~~d~g~y~c~ 87 (111)
+.|.|........ .+.|++... . +. ....|+...... .....|.|.+++. +|+|.|.|.
T Consensus 2 v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~ 80 (81)
T smart00406 2 VTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRV-EDTGTYYCA 80 (81)
T ss_pred EEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCH-HHCEEEEEc
Confidence 5678876654433 677876431 0 00 112344443321 2335589999998 999999996
No 167
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.89 E-value=0.00049 Score=34.05 Aligned_cols=69 Identities=17% Similarity=0.237 Sum_probs=39.8
Q ss_pred ecCCcEEEEEEEeccCCC--eEEEEECCeeccCCCC-ceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442 23 KAGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQS-RYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGV 92 (111)
Q Consensus 23 ~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~ 92 (111)
..++..+|.|.+.+..++ .+.|+++|..+..... .......++.........+.. .+...|.|.+....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~-~~~~~ysC~V~H~~ 83 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTP-SRGDTYTCVVEHSS 83 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcC-CCCCEEEEEEEeCC
Confidence 357889999999996655 6799999988643211 111111111111122223344 55568999988754
No 168
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.88 E-value=0.00058 Score=34.87 Aligned_cols=68 Identities=22% Similarity=0.363 Sum_probs=39.8
Q ss_pred eecCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCceEEEeCCC-C---CeEEEEccCCCCCCCe-EEEEEeeeCC
Q psy2442 22 VKAGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYMVQEFPP-G---GSLLRIEPVRHARDDA-VYECVAENGV 92 (111)
Q Consensus 22 ~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~-~---~~~l~~~~~~~~~d~g-~y~c~~~~~~ 92 (111)
...|+.++|.|.+.+..++ .+.|+++|..+........ ...++ . .+.+.+.. .. .|.+ .|.|.+.+..
T Consensus 18 ~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~-p~~d~~ty~~~S~L~~~~-~~-~d~~~~ytC~V~H~~ 92 (111)
T cd05772 18 ANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNIT-PEGDSVSYNVTSTVQVKL-TE-DDVHSQVTCEVQHRT 92 (111)
T ss_pred cCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccccee-eCCCCCcEEEEEEEEEEC-cc-ccccCceEEEEEeCC
Confidence 4468889999999886554 7899999998753211111 11111 0 11133333 22 4443 5999988754
No 169
>KOG3515|consensus
Probab=97.76 E-value=5.3e-05 Score=49.72 Aligned_cols=90 Identities=18% Similarity=0.195 Sum_probs=60.3
Q ss_pred CeeEEcCcceeeecCCcEEEEEEEeccCCC-eEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442 11 PEITLRPRNQAVKAGGITSFYCIARGDPIP-VIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE 89 (111)
Q Consensus 11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~ 89 (111)
|.+........+..|+.+.|.|.+.+.|+. .+.|++.+.... .++... ....|.+....+ ...+.|.|.+.
T Consensus 8 pv~~~~~l~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~---~~~~~~----~~~~~~~~~~~~-~~~~~~~c~a~ 79 (741)
T KOG3515|consen 8 PVCESSSLTVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH---GRYATI----ADPTLVTTGDVR-DTVAELNCRAF 79 (741)
T ss_pred ccccCCCCChhhccCCcceeeeecCCCCCCcceEEEecCcccc---cccccc----cCCceeeecchh-hhhhhhhhhhc
Confidence 333333333477889999999998876655 799999877654 333332 334466666666 66788999999
Q ss_pred eCCCceEeeEEEEEEecCC
Q psy2442 90 NGVGDAVSAEASLTVYEGE 108 (111)
Q Consensus 90 ~~~~~~~~~~~~l~~~~~~ 108 (111)
|..+........+.+.+++
T Consensus 80 ns~~~~~~~~~~l~v~~~p 98 (741)
T KOG3515|consen 80 NSVGMPSRCPMILDVDYPP 98 (741)
T ss_pred ccccCceecceeeccccCc
Confidence 9876554556666555544
No 170
>PHA03376 BARF1; Provisional
Probab=97.73 E-value=0.0018 Score=36.07 Aligned_cols=71 Identities=15% Similarity=0.200 Sum_probs=45.2
Q ss_pred ceeeecCCcEEEEEEEeccC-CC--eEEEEECCee----c-c-----------CCCCceEEEeCCCCCeEEEEccCCCCC
Q psy2442 19 NQAVKAGGITSFYCIARGDP-IP--VIQWRKNGKR----V-S-----------GTQSRYMVQEFPPGGSLLRIEPVRHAR 79 (111)
Q Consensus 19 ~~~~~~g~~~~l~c~~~~~~-~~--~~~w~~~~~~----~-~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (111)
.+.+..|+.+.|.|...... .. .+.|++.+.. . . ....++.+.... ..-.|.|.++.. +
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~-gnvsLvI~~l~l-S 97 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA-NTFFLVVTAANI-S 97 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecC-CeEEEEEEeeee-c
Confidence 46777899999999976322 22 6789985321 0 0 111233332222 334488889998 9
Q ss_pred CCeEEEEEeeeC
Q psy2442 80 DDAVYECVAENG 91 (111)
Q Consensus 80 d~g~y~c~~~~~ 91 (111)
|.|.|.|.....
T Consensus 98 DdGtY~C~fQkg 109 (221)
T PHA03376 98 HDGNYLCRMKLG 109 (221)
T ss_pred CCceEEEEEEcC
Confidence 999999997753
No 171
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.71 E-value=0.0011 Score=32.86 Aligned_cols=68 Identities=18% Similarity=0.242 Sum_probs=37.7
Q ss_pred cCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCceEEEeCCCCC-eEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442 24 AGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYMVQEFPPGG-SLLRIEPVRHARDDAVYECVAENGV 92 (111)
Q Consensus 24 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~d~g~y~c~~~~~~ 92 (111)
.++..+|.|.+.+..+. .+.|.++|..+...........+.+.. .......+.. .+...|.|.+....
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~-~~~~~ytC~V~H~~ 84 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTP-EEGDIYSCIVEHWG 84 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEEC-CCCCeEEEEEEeCC
Confidence 35567999999996655 679999998864321111111111111 1111123333 45568999987753
No 172
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.66 E-value=0.00094 Score=33.55 Aligned_cols=32 Identities=19% Similarity=0.533 Sum_probs=25.2
Q ss_pred eeecCCcEEEEEEEeccCCC--eEEEEECCeecc
Q psy2442 21 AVKAGGITSFYCIARGDPIP--VIQWRKNGKRVS 52 (111)
Q Consensus 21 ~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~ 52 (111)
.+..++.++|.|.+.+..++ .+.|.++|....
T Consensus 12 ~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~ 45 (102)
T cd05768 12 ELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLS 45 (102)
T ss_pred HhCcCCceEEEEEEeeEeCCCCEEEEEECCEECC
Confidence 34457889999999997665 569999998764
No 173
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=97.63 E-value=0.00021 Score=37.78 Aligned_cols=38 Identities=21% Similarity=0.292 Sum_probs=30.3
Q ss_pred EEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEEecCCC
Q psy2442 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEE 109 (111)
Q Consensus 70 l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~~~~~ 109 (111)
|.|.+++. .|+|.|.|.+.+..+.. ...+.|.+..+|.
T Consensus 3 L~i~~v~~-~D~G~Y~C~~~~~~~~~-~~~~~l~v~~~P~ 40 (139)
T cd05771 3 LTLPGLTV-HDEGTYICSVSTPPHQA-QQIIQLSVSEPPR 40 (139)
T ss_pred EEECCCCH-HHCEEEEEEEEccCcce-eeEEEEEEecCCc
Confidence 78889998 99999999998876663 6677777766653
No 174
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.61 E-value=0.00083 Score=33.59 Aligned_cols=32 Identities=22% Similarity=0.495 Sum_probs=24.7
Q ss_pred eeecCCcEEEEEEEeccCCC--eEEEEECCeecc
Q psy2442 21 AVKAGGITSFYCIARGDPIP--VIQWRKNGKRVS 52 (111)
Q Consensus 21 ~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~ 52 (111)
....++.++|.|.+.+..+. .+.|+++|..+.
T Consensus 13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~ 46 (100)
T cd07699 13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVS 46 (100)
T ss_pred HHccCCCcEEEEEEEeEECCCCEEEEEECCEECc
Confidence 34457789999999886543 689999998874
No 175
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.60 E-value=0.0012 Score=31.68 Aligned_cols=65 Identities=22% Similarity=0.318 Sum_probs=38.7
Q ss_pred cCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCceEEE-eCCCCC---eEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442 24 AGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYMVQ-EFPPGG---SLLRIEPVRHARDDAVYECVAENGV 92 (111)
Q Consensus 24 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~-~~~~~~---~~l~~~~~~~~~d~g~y~c~~~~~~ 92 (111)
.++.+.|.|.+.+..+. .+.|++++..+.......... ..++.. ..+.+. . .+...|.|.+....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~-~~~~~ysC~V~H~~ 77 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---W-NSGDEYSCRVTHES 77 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---T-TTTGGEEEEEEETT
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---C-CCCCEEEEEEEECC
Confidence 48899999999986555 588999998875321111111 111111 113333 3 45557999988754
No 176
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.60 E-value=0.0017 Score=32.25 Aligned_cols=32 Identities=13% Similarity=0.337 Sum_probs=24.3
Q ss_pred eeecCCcEEEEEEEeccCCC--eEEEEECCeecc
Q psy2442 21 AVKAGGITSFYCIARGDPIP--VIQWRKNGKRVS 52 (111)
Q Consensus 21 ~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~ 52 (111)
....+..++|.|.+.+..++ .+.|.++|....
T Consensus 12 e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~ 45 (96)
T cd07697 12 EIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSI 45 (96)
T ss_pred HHccCCCEEEEEEEEEEeCCCeEEEEEECCEECc
Confidence 33445678999999996655 578999998764
No 177
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.57 E-value=0.0015 Score=30.78 Aligned_cols=64 Identities=19% Similarity=0.346 Sum_probs=35.1
Q ss_pred EEEEEEEeccCCC--eEEEEECCeeccCCCCceEEEe-CCCC---CeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442 28 TSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYMVQE-FPPG---GSLLRIEPVRHARDDAVYECVAENGV 92 (111)
Q Consensus 28 ~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~-~~~~---~~~l~~~~~~~~~d~g~y~c~~~~~~ 92 (111)
++|.|.+.+..++ .+.|+++|..+........... .++. ...|.+..... .+...|.|.+.+..
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~-~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTW-ESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccC-CCCCEEEEEEEEcC
Confidence 5799999986444 7899999886432101110111 1111 12244444343 45578999987643
No 178
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.56 E-value=0.0021 Score=31.98 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=24.9
Q ss_pred CeEEEEccCCCCCCCeEEEEEeee-CCCceEeeEEE
Q psy2442 67 GSLLRIEPVRHARDDAVYECVAEN-GVGDAVSAEAS 101 (111)
Q Consensus 67 ~~~l~~~~~~~~~d~g~y~c~~~~-~~~~~~~~~~~ 101 (111)
...+.|.++.. .|+|.|.|.... +.|. .+..+.
T Consensus 59 d~sI~i~nvt~-~D~G~Y~C~~~t~P~g~-~~~~i~ 92 (96)
T cd05889 59 DMSLSFNNATE-EDVGLYCCSLVTYPQGS-WEKVIE 92 (96)
T ss_pred ccEEEEcCCCc-ccCEEEEEEEEeCCCCC-eEEEEE
Confidence 35589999998 999999999876 4565 355544
No 179
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.50 E-value=0.0025 Score=31.52 Aligned_cols=28 Identities=14% Similarity=0.427 Sum_probs=22.3
Q ss_pred cCCcEEEEEEEeccCCC--eEEEEECCeec
Q psy2442 24 AGGITSFYCIARGDPIP--VIQWRKNGKRV 51 (111)
Q Consensus 24 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~~ 51 (111)
..+.++|.|.+.+..+. .+.|.++|...
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~ 42 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVA 42 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEEC
Confidence 45668999999986554 67999998876
No 180
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.47 E-value=0.0033 Score=32.22 Aligned_cols=71 Identities=11% Similarity=0.142 Sum_probs=44.0
Q ss_pred ceeeecCCcEEEEEEEeccCCC---eEEEEECCeec--------------cCCCCceEEEeCC-CCCeEEEEccCCCCCC
Q psy2442 19 NQAVKAGGITSFYCIARGDPIP---VIQWRKNGKRV--------------SGTQSRYMVQEFP-PGGSLLRIEPVRHARD 80 (111)
Q Consensus 19 ~~~~~~g~~~~l~c~~~~~~~~---~~~w~~~~~~~--------------~~~~~~~~~~~~~-~~~~~l~~~~~~~~~d 80 (111)
...+..|..++|.|...+.... .+.|+++.... .....++...... ...-.|.+..++. +|
T Consensus 7 ~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a-~D 85 (115)
T cd05721 7 PVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRA-NQ 85 (115)
T ss_pred CeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCH-HH
Confidence 3567788999999998664433 57787642111 0111233333222 1234488999998 99
Q ss_pred CeEEEEEeee
Q psy2442 81 DAVYECVAEN 90 (111)
Q Consensus 81 ~g~y~c~~~~ 90 (111)
.+.|.|....
T Consensus 86 Ta~Y~Ca~e~ 95 (115)
T cd05721 86 TDIYFCKIEL 95 (115)
T ss_pred CeEEEEEeee
Confidence 9999997643
No 181
>PHA02633 hypothetical protein; Provisional
Probab=97.38 E-value=0.0017 Score=29.37 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=25.8
Q ss_pred EEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEEecC
Q psy2442 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEG 107 (111)
Q Consensus 70 l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~~~ 107 (111)
|.+.++.. +|+|.|.|...|..-. ....+.+.|...
T Consensus 20 Lwilpa~~-sDSGiYiC~~rn~t~c-~~~si~l~V~~~ 55 (63)
T PHA02633 20 MLILNPTQ-SDSGIYMCITKNETYS-DMMKFDLCICLR 55 (63)
T ss_pred EEEecccc-ccCcEEEEEEcCCCee-EEEEEEEEEeec
Confidence 56666665 8999999999876543 366677776543
No 182
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.38 E-value=0.0014 Score=32.61 Aligned_cols=31 Identities=6% Similarity=0.234 Sum_probs=23.8
Q ss_pred eeeecCCcEEEEEEEecc-CCC--eEEEEECCee
Q psy2442 20 QAVKAGGITSFYCIARGD-PIP--VIQWRKNGKR 50 (111)
Q Consensus 20 ~~~~~g~~~~l~c~~~~~-~~~--~~~w~~~~~~ 50 (111)
..+..++.++|.|.+.+. .++ .+.|.+++..
T Consensus 9 ~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~ 42 (96)
T cd07696 9 KQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGE 42 (96)
T ss_pred HHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeE
Confidence 345568999999999998 544 5799998643
No 183
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=97.22 E-value=0.0025 Score=32.06 Aligned_cols=46 Identities=17% Similarity=0.322 Sum_probs=34.3
Q ss_pred CceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442 56 SRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105 (111)
Q Consensus 56 ~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~ 105 (111)
.++.+.. ..-.|.|..++. +|+|.|...+.+..|......+.+.|.
T Consensus 62 ~r~~F~~---enlaLlIkaAq~-qDSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 62 NRFNFTS---ENLALLIKAAQP-QDSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp HHEEEET---TTTEEEESS-SG-GG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred ceEeeec---cCceEEEeecCc-ccCceEEEEEEcCCCcEEEEEEEEEee
Confidence 3555553 344589999998 999999999999999877778888765
No 184
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.19 E-value=0.0033 Score=28.84 Aligned_cols=52 Identities=25% Similarity=0.479 Sum_probs=33.2
Q ss_pred eecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeee
Q psy2442 22 VKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAEN 90 (111)
Q Consensus 22 ~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~ 90 (111)
...|.+++|.|+.... .+.|.+++......... +.+.+-. ++.|.|.|.+.+
T Consensus 4 sisGTtVtlTCP~~~~---~i~W~~n~~~~~g~~~~------------~~~~~~~--e~~G~Y~C~~~~ 55 (65)
T cd07692 4 SISGTTVTVTCPLSGD---DIKWKKNDQVSQGSDEK------------YLSLNHF--SSSGYYHCTADN 55 (65)
T ss_pred EEeccEEEEECCCCCC---CceEEeCCccCCCCCce------------EEeeccC--CCCceEEEEeCC
Confidence 3478999999976532 38999998665542111 2222222 568999998753
No 185
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.15 E-value=0.0085 Score=30.84 Aligned_cols=32 Identities=25% Similarity=0.549 Sum_probs=24.7
Q ss_pred eeecCCcEEEEEEEeccCCC--eEEEEECCeecc
Q psy2442 21 AVKAGGITSFYCIARGDPIP--VIQWRKNGKRVS 52 (111)
Q Consensus 21 ~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~ 52 (111)
....+..++|.|.+.+..+. .+.|.+++..+.
T Consensus 14 e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~ 47 (115)
T cd05769 14 EIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVT 47 (115)
T ss_pred HhccCCCcEEEEEEEeEeCCCcEEEEEECCEECC
Confidence 34456778999999986655 679999998764
No 186
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.98 E-value=0.012 Score=29.15 Aligned_cols=27 Identities=15% Similarity=0.366 Sum_probs=22.0
Q ss_pred cCCcEEEEEEEeccCCC--eEEEEECCee
Q psy2442 24 AGGITSFYCIARGDPIP--VIQWRKNGKR 50 (111)
Q Consensus 24 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~ 50 (111)
.++.++|.|.+.+..+. .+.|.++|..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~ 43 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS 43 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence 46678999999996655 5789999987
No 187
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.88 E-value=0.011 Score=27.43 Aligned_cols=49 Identities=22% Similarity=0.470 Sum_probs=30.5
Q ss_pred CCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeee
Q psy2442 25 GGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAEN 90 (111)
Q Consensus 25 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~ 90 (111)
.+.+.|.|.. ...+.|++ |..+... ....+.+-.... ...|.|.|...+
T Consensus 6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~-----------~~~tlnLGs~~~-DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKK-GKEILEV-----------SNTLLDLGSRIN-DPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecC----CCcEEEec-Ccccccc-----------cccEEeccCccc-CCCcceEecCcc
Confidence 4578899955 23689999 4444322 112244444444 668999998766
No 188
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=96.72 E-value=0.022 Score=28.27 Aligned_cols=62 Identities=15% Similarity=0.225 Sum_probs=34.1
Q ss_pred cEEEEEEEe-ccCCCeEEEEECCeeccCCCCceEEEeCCCC---CeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442 27 ITSFYCIAR-GDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG---GSLLRIEPVRHARDDAVYECVAENGV 92 (111)
Q Consensus 27 ~~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~d~g~y~c~~~~~~ 92 (111)
...+.|.+. +.|.+.+.|+.+..... ........++. .+.|.+..... .|...|.|.+.+..
T Consensus 17 ~~va~C~s~~gkPaa~IsW~~~~~g~~---~~~~~~~~~gt~tv~S~l~~~P~~~-d~Gk~ltC~v~h~a 82 (95)
T cd07703 17 VPVAKCVSANGRPPARISWSSTLGGNA---NTTSKENGDGTVTVTSEYSLVPTPE-ANGKEVTCKVEHET 82 (95)
T ss_pred cEEEEEEcCCCCCCcEEEEEcCCCCCe---eEEEEeCCCCCEEEEEEEEEecCHH-HCCCEEEEEEeCcc
Confidence 567899865 67888999998722111 11111111101 12355544433 34457999999865
No 189
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=96.63 E-value=0.026 Score=28.00 Aligned_cols=64 Identities=19% Similarity=0.295 Sum_probs=34.5
Q ss_pred CCcEEEEEEE-eccCCCeEEEEECCeeccCCCCceEEEeCCC---CCeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442 25 GGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQSRYMVQEFPP---GGSLLRIEPVRHARDDAVYECVAENGV 92 (111)
Q Consensus 25 g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~d~g~y~c~~~~~~ 92 (111)
.....+.|.+ .+.|.+.+.|+++..... ........++ ..+.|.+..... .+...|.|.+.+..
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~---~~~~~~~~~g~~tv~S~l~~~p~~~-d~G~~~tC~v~h~~ 82 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETTLGGEA---ETQSKENPNGTVTVTSEYRLVPSRE-ANGKELTCVVSHPT 82 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeCCCCcc---eeEeecCCCCCEEEEEEEEEecCHH-HCCCEEEEEEeCcc
Confidence 3456788997 578888999998611110 0000011010 112355544432 34457999998865
No 190
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.56 E-value=0.026 Score=28.30 Aligned_cols=36 Identities=25% Similarity=0.465 Sum_probs=25.0
Q ss_pred EcCcceeeecCCcEEEEEEEeccC-CC--eEEEEECCee
Q psy2442 15 LRPRNQAVKAGGITSFYCIARGDP-IP--VIQWRKNGKR 50 (111)
Q Consensus 15 ~~~~~~~~~~g~~~~l~c~~~~~~-~~--~~~w~~~~~~ 50 (111)
+.+.......++.++|.|.+.+.. +. .+.|..+|..
T Consensus 9 ~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~ 47 (99)
T cd04986 9 QRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK 47 (99)
T ss_pred ECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence 333333344678899999999865 32 6889988765
No 191
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=96.11 E-value=0.023 Score=33.31 Aligned_cols=50 Identities=12% Similarity=0.148 Sum_probs=35.5
Q ss_pred CCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442 38 PIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGV 92 (111)
Q Consensus 38 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~ 92 (111)
..|...|...+...-....+.+++ ....|.+.+... .++|.|.|......
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT----~TG~L~~~~F~e-smSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNIT----ETGKLMFKNFQE-SMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEc----cCceEEeecccc-ccCCceEEEEEEEe
Confidence 356888988755554443566665 334488999988 99999999977643
No 192
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=95.95 E-value=0.077 Score=26.51 Aligned_cols=66 Identities=23% Similarity=0.337 Sum_probs=37.8
Q ss_pred eeeecCCcEEE-EEEE-eccCCCeEEEEECCeeccC------CCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeC
Q psy2442 20 QAVKAGGITSF-YCIA-RGDPIPVIQWRKNGKRVSG------TQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENG 91 (111)
Q Consensus 20 ~~~~~g~~~~l-~c~~-~~~~~~~~~w~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~ 91 (111)
..+..|+.+.+ .|.+ .+.|.+.+.|+.+...... ....+. ..+.+.+..... .|.-.+.|.+.+.
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~T------V~S~~~l~p~r~-d~G~~vtC~V~H~ 83 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTT------VTSEYIWVPSRH-ANGHPLTCVVSHP 83 (97)
T ss_pred eEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEE------EEEEEEEEeCHH-HCCcEEEEEEeCc
Confidence 45667777777 7875 5678889999976332210 001111 112244444433 4455799999876
Q ss_pred C
Q psy2442 92 V 92 (111)
Q Consensus 92 ~ 92 (111)
.
T Consensus 84 a 84 (97)
T cd07704 84 A 84 (97)
T ss_pred c
Confidence 4
No 193
>KOG1480|consensus
Probab=95.93 E-value=0.0041 Score=41.47 Aligned_cols=83 Identities=25% Similarity=0.368 Sum_probs=54.9
Q ss_pred EcCcceeeecCCcEEEEEE-EeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442 15 LRPRNQAVKAGGITSFYCI-ARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVG 93 (111)
Q Consensus 15 ~~~~~~~~~~g~~~~l~c~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~ 93 (111)
..+....+..+..+.+.|. ..+.+...+.|++++..+... ..+... ....+.+..+.. .|.|.|.|.+.|..+
T Consensus 134 ~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd-~n~~~~----~d~~li~~~arl-sd~~nytc~a~ni~~ 207 (909)
T KOG1480|consen 134 QSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPD-ANVIRA----SDHNLIISQARL-SDSGNYTCEATNIVA 207 (909)
T ss_pred cChhhheecccccccccccCcccchhhhhhccccCCCCCcc-ccchhh----hcCCccccchhh-hhcccceeeeehhhc
Confidence 3344456777888888887 466777789999998877642 332222 223366777776 899999999999877
Q ss_pred ceEeeEEEEE
Q psy2442 94 DAVSAEASLT 103 (111)
Q Consensus 94 ~~~~~~~~l~ 103 (111)
........+.
T Consensus 208 ~r~~~~~~v~ 217 (909)
T KOG1480|consen 208 KRKSDPATVQ 217 (909)
T ss_pred cccccceEEE
Confidence 5333344333
No 194
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=94.86 E-value=0.21 Score=24.68 Aligned_cols=85 Identities=21% Similarity=0.297 Sum_probs=49.9
Q ss_pred eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442 13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGV 92 (111)
Q Consensus 13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~ 92 (111)
+...|....+..|+++.+.|...-..+..+.|...-.. ....... ....+.+.++. .| ....|...-.
T Consensus 6 v~v~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L~k-------~~~~~g~-~W~~f~LsnV~--~d-s~~~C~~~C~- 73 (91)
T PF03921_consen 6 VRVSPEEPVVPPGGSVWVNCSTSCPQPEKIGLETSLSK-------TELDSGP-QWKAFQLSNVT--ED-SSPLCFFNCS- 73 (91)
T ss_dssp EEEESSEEEEETTEEEEEEEEESSSS-SEEEEESSSEE-------EEEEEET-TEEEEEEEEE---SC-EEEEEEEEET-
T ss_pred EEEECCccEECCCCCEEEEEcCCCCCCCcceEEEecCC-------cccCCCC-cEEEEEEEccc--cC-CeEEEEEEcC-
Confidence 34566667889999999999986544445565543221 1111111 33447777776 33 5677887754
Q ss_pred CceEeeEEEEEEecCCC
Q psy2442 93 GDAVSAEASLTVYEGEE 109 (111)
Q Consensus 93 ~~~~~~~~~l~~~~~~~ 109 (111)
|........|.++.+|.
T Consensus 74 g~Q~~~~~~ItVY~~Pe 90 (91)
T PF03921_consen 74 GEQSSASANITVYKPPE 90 (91)
T ss_dssp TEEEEEEEEEEEEB--S
T ss_pred CeEEEeEEeeEEeCCCC
Confidence 33346778888887764
No 195
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=93.19 E-value=0.57 Score=23.57 Aligned_cols=67 Identities=15% Similarity=0.202 Sum_probs=37.2
Q ss_pred eeecCCcEEEEEEEecc-CC--CeEEEEECCeeccCCCCceEEE---eC-CCCCeEEEEccCCCCCCCe-EEEEEeeeC
Q psy2442 21 AVKAGGITSFYCIARGD-PI--PVIQWRKNGKRVSGTQSRYMVQ---EF-PPGGSLLRIEPVRHARDDA-VYECVAENG 91 (111)
Q Consensus 21 ~~~~g~~~~l~c~~~~~-~~--~~~~w~~~~~~~~~~~~~~~~~---~~-~~~~~~l~~~~~~~~~d~g-~y~c~~~~~ 91 (111)
....|..+++.|.+.+- |. ..+.|+++...+... .+... +. ......+.+.. .+ .|.| .|.|.+.-.
T Consensus 11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~--~f~~~~~~ks~~~~~~~vtftp-tr-eD~g~~fsC~A~L~ 85 (99)
T cd07689 11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSK--SFLEDMDKKSLETKSLEVTFTP-TI-EDIGKVLVCRAKLH 85 (99)
T ss_pred cccCCceEEEEEEecCcccCCceEEEEecCcceeccc--ccccccccCCCCCcceeEEEec-ch-hhCCcEEEEEEEEe
Confidence 34789999999998753 33 368898876654322 11100 00 00112233333 24 6776 899987643
No 196
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=93.13 E-value=0.29 Score=25.89 Aligned_cols=80 Identities=14% Similarity=0.293 Sum_probs=38.7
Q ss_pred eecCCcEEEEEEEecc-----CCCeEEEEECCeecc---CCCCceE--------EEeCCCCCeEEEEccCCCCCCCeEEE
Q psy2442 22 VKAGGITSFYCIARGD-----PIPVIQWRKNGKRVS---GTQSRYM--------VQEFPPGGSLLRIEPVRHARDDAVYE 85 (111)
Q Consensus 22 ~~~g~~~~l~c~~~~~-----~~~~~~w~~~~~~~~---~~~~~~~--------~~~~~~~~~~l~~~~~~~~~d~g~y~ 85 (111)
..-.+++.+.|.+... ..-.+.|...+..+. +...+.. +..-..+...|.+...+. -.|.|.
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a--~~GnYT 101 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDA--VEGNYT 101 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHH--H-EEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhc--cccceE
Confidence 3357899999998652 223578998877652 1111110 100000222355555443 379999
Q ss_pred EEeeeCCCceEeeEEEEEE
Q psy2442 86 CVAENGVGDAVSAEASLTV 104 (111)
Q Consensus 86 c~~~~~~~~~~~~~~~l~~ 104 (111)
|.+....... +..+.|..
T Consensus 102 CeVt~~~~eg-e~~i~Lk~ 119 (130)
T PF08204_consen 102 CEVTELSREG-ETTIELKY 119 (130)
T ss_dssp EEEEETTEEE-EEEEEEEE
T ss_pred EEEEecCCCc-eEEEEEEE
Confidence 9998765432 44444443
No 197
>KOG4597|consensus
Probab=91.12 E-value=0.84 Score=29.56 Aligned_cols=79 Identities=19% Similarity=0.162 Sum_probs=51.4
Q ss_pred eeeecCCcEEEEEEEeccCCCeEEEEEC---Ceec--cCC--CCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442 20 QAVKAGGITSFYCIARGDPIPVIQWRKN---GKRV--SGT--QSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGV 92 (111)
Q Consensus 20 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~---~~~~--~~~--~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~ 92 (111)
..+..+.+..++|...|.+.+.+.|.+. .... ... .++.... +.-.|.|-+... .|+|-|.|.+.+..
T Consensus 206 w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vt----stcql~ic~ewq-~~a~w~tCs~rcg~ 280 (560)
T KOG4597|consen 206 WFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVT----STCQLVICNEWQ-ADAGWYTCSARCGA 280 (560)
T ss_pred hhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCccee----eeeeEEEcchhh-cCCCceeecccccc
Confidence 4566788899999999999999999653 1111 100 0111111 223377777776 89999999999988
Q ss_pred CceEeeEEEEEE
Q psy2442 93 GDAVSAEASLTV 104 (111)
Q Consensus 93 ~~~~~~~~~l~~ 104 (111)
|.. ...+.+.+
T Consensus 281 g~~-~rdv~c~s 291 (560)
T KOG4597|consen 281 GFL-RRDVPCSS 291 (560)
T ss_pred cee-eccceeee
Confidence 864 55555544
No 198
>PHA03042 CD47-like protein; Provisional
Probab=90.31 E-value=2.7 Score=25.34 Aligned_cols=61 Identities=18% Similarity=0.196 Sum_probs=38.0
Q ss_pred ecCCcEEEEEEEecc-----CCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442 23 KAGGITSFYCIARGD-----PIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVG 93 (111)
Q Consensus 23 ~~g~~~~l~c~~~~~-----~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~ 93 (111)
.-.+++.+.|..... ..-.+.|..++..+...+.. ....+.+.-.+ .-.|.|.|.+.+...
T Consensus 29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t--------n~aSL~~~f~~--~l~GNYTCEv~~l~n 94 (286)
T PHA03042 29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT--------NTSSLKFNFSK--NLSGNYTCEAINKFN 94 (286)
T ss_pred ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC--------cceEEEEeccc--cCCCceeEEEeeccc
Confidence 457899999997653 34468999887765321111 11224444333 457999999887543
No 199
>PHA03269 envelope glycoprotein C; Provisional
Probab=90.30 E-value=3.7 Score=26.96 Aligned_cols=50 Identities=22% Similarity=0.315 Sum_probs=35.9
Q ss_pred ceeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCC---eEEEEECCeeccC
Q psy2442 2 YRKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIP---VIQWRKNGKRVSG 53 (111)
Q Consensus 2 ~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~---~~~w~~~~~~~~~ 53 (111)
|.+|.++.+|.+...+ ..+..|+...-.|.+....++ .+.|+.++..+..
T Consensus 321 ~VtV~~yr~PsVsV~p--~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~ 373 (566)
T PHA03269 321 HITVMSYKRPNITVIG--DPVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGK 373 (566)
T ss_pred EEEEEEecCCCccccC--CccccCCCceEEEEeeeecCCCceEEEEEeCCcccCc
Confidence 3455666667554333 467899999999998776544 6889999888763
No 200
>PHA03052 Hypothetical protein; Provisional
Probab=90.02 E-value=1.2 Score=20.75 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=25.3
Q ss_pred cceeeecCCcEEEEEEEeccC---CCeEEEEECCeec
Q psy2442 18 RNQAVKAGGITSFYCIARGDP---IPVIQWRKNGKRV 51 (111)
Q Consensus 18 ~~~~~~~g~~~~l~c~~~~~~---~~~~~w~~~~~~~ 51 (111)
..+.+..|+.+++.|++.-.+ .+.+.|..++..+
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 557788999999999975332 3467888877665
No 201
>PHA03270 envelope glycoprotein C; Provisional
Probab=89.89 E-value=3.8 Score=26.44 Aligned_cols=49 Identities=27% Similarity=0.520 Sum_probs=35.4
Q ss_pred ceeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCC---eEEEEECCeecc
Q psy2442 2 YRKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIP---VIQWRKNGKRVS 52 (111)
Q Consensus 2 ~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~---~~~w~~~~~~~~ 52 (111)
|.+|..+-+|.+...+ ..+..|+...-.|.+....++ .+.|+.++....
T Consensus 213 ~VtV~~yr~Psvsv~~--~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~ 264 (466)
T PHA03270 213 WTRVRMFRRPSLSIRP--HAVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVF 264 (466)
T ss_pred EEEEEEecCCcccccC--CccccCCCceEEEEeeeecCCCceEEEEEeCCcccc
Confidence 3455556666654433 467899999999998776554 688999998774
No 202
>PHA02982 hypothetical protein; Provisional
Probab=89.39 E-value=2.8 Score=24.31 Aligned_cols=74 Identities=9% Similarity=0.236 Sum_probs=43.9
Q ss_pred ceeeecCCcEEEEEEEeccC-CCeEEEEECCeec-c----------C------CCCceEEEeCCCCCeEEEEccCCCCCC
Q psy2442 19 NQAVKAGGITSFYCIARGDP-IPVIQWRKNGKRV-S----------G------TQSRYMVQEFPPGGSLLRIEPVRHARD 80 (111)
Q Consensus 19 ~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~~~~-~----------~------~~~~~~~~~~~~~~~~l~~~~~~~~~d 80 (111)
.+....++.+.|.|...... ..+..|..+.... . . ...-+.....+...++|.+..+.. +.
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i-~N 111 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDP-QN 111 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCc-cc
Confidence 34566799999999843322 2256687643211 1 0 001111122223556799999998 88
Q ss_pred CeEEEEEeeeCCC
Q psy2442 81 DAVYECVAENGVG 93 (111)
Q Consensus 81 ~g~y~c~~~~~~~ 93 (111)
.|-|.|.+....+
T Consensus 112 ~GCYtc~~ks~~~ 124 (251)
T PHA02982 112 LGCFTCEAKDAEG 124 (251)
T ss_pred CCceEEEEecCCC
Confidence 9999999886443
No 203
>PHA03273 envelope glycoprotein C; Provisional
Probab=89.00 E-value=2.1 Score=27.74 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=34.8
Q ss_pred eeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCC---eEEEEECCeecc
Q psy2442 3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIP---VIQWRKNGKRVS 52 (111)
Q Consensus 3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~---~~~w~~~~~~~~ 52 (111)
.++..+-+|.+...+ ..+..|+...-.|.+....++ .+.|+.++....
T Consensus 230 VtV~~yr~Psvsv~~--~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~ 280 (486)
T PHA03273 230 VTVSTYNAPLVDLSV--HPSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVD 280 (486)
T ss_pred EEEEEecCCcccccC--CccccCCCceEEEEeeeecCCCceEEEEEeCCeecc
Confidence 344446666654433 467899999999998775554 689999999876
No 204
>KOG3515|consensus
Probab=86.43 E-value=2.2 Score=29.45 Aligned_cols=78 Identities=23% Similarity=0.165 Sum_probs=44.3
Q ss_pred ecCCcEEEEEEEeccC-CCeEEEEECCeeccCCC-CceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEE
Q psy2442 23 KAGGITSFYCIARGDP-IPVIQWRKNGKRVSGTQ-SRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEA 100 (111)
Q Consensus 23 ~~g~~~~l~c~~~~~~-~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~ 100 (111)
.+++.....-...+.+ .+.+.|...+-.+.... ..+.... ........++.+ .|.|.|.|.+.|.-|.. ...+
T Consensus 414 ~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~---~~~~~s~~~v~~-~d~g~y~~tatns~gg~-~~~~ 488 (741)
T KOG3515|consen 414 MEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGA---GAGLGSGVNVSR-SDGGSYGLTATNSPGGA-QAYL 488 (741)
T ss_pred ccCccccccCcccCCCcccchhheecceecccccCceEEeec---cccccccceeee-ccCCcceeeeccCCCce-eeEE
Confidence 3444443333333433 44788988777664322 2333332 222233456777 89999999999988775 5555
Q ss_pred EEEEe
Q psy2442 101 SLTVY 105 (111)
Q Consensus 101 ~l~~~ 105 (111)
.+.+.
T Consensus 489 ~~~~~ 493 (741)
T KOG3515|consen 489 LLGVH 493 (741)
T ss_pred eeccc
Confidence 54443
No 205
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=86.24 E-value=6.2 Score=24.68 Aligned_cols=21 Identities=14% Similarity=0.430 Sum_probs=17.7
Q ss_pred cEEEEEEEeccCCC--eEEEEEC
Q psy2442 27 ITSFYCIARGDPIP--VIQWRKN 47 (111)
Q Consensus 27 ~~~l~c~~~~~~~~--~~~w~~~ 47 (111)
.++|.|.+.|..+. .+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999998776 5689998
No 206
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=84.64 E-value=3.2 Score=19.98 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=13.8
Q ss_pred EEEccCCCCCCCeEEEEEee
Q psy2442 70 LRIEPVRHARDDAVYECVAE 89 (111)
Q Consensus 70 l~~~~~~~~~d~g~y~c~~~ 89 (111)
........ .|+|.+.|.+.
T Consensus 45 ~~~~~~~~-~d~G~w~C~a~ 63 (80)
T PF05790_consen 45 VSTFTPTT-EDSGTWVCTAS 63 (80)
T ss_dssp EEEESBTC-GGSEEEEEEEE
T ss_pred EEEecCCC-CCCEEEEEEEc
Confidence 34444555 89999999994
No 207
>PHA03376 BARF1; Provisional
Probab=84.09 E-value=2.1 Score=24.50 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=20.4
Q ss_pred CCcEEEEEEEeccCCCeEEEEECCe
Q psy2442 25 GGITSFYCIARGDPIPVIQWRKNGK 49 (111)
Q Consensus 25 g~~~~l~c~~~~~~~~~~~w~~~~~ 49 (111)
-+...+.|...+.|.|.++|..+..
T Consensus 139 ~~~~~i~C~sggfP~P~~~Wle~~~ 163 (221)
T PHA03376 139 FSVLTVTCTVNAFPHPHVQWLMPEG 163 (221)
T ss_pred CCeeEEEEecCCcCCchheeccccC
Confidence 4567889998889999999987644
No 208
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=78.52 E-value=6.4 Score=19.38 Aligned_cols=64 Identities=20% Similarity=0.429 Sum_probs=36.0
Q ss_pred ceeeecCCcEEEEEEEecc-----CCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEE
Q psy2442 19 NQAVKAGGITSFYCIARGD-----PIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECV 87 (111)
Q Consensus 19 ~~~~~~g~~~~l~c~~~~~-----~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~ 87 (111)
...+..|+.++..|..... ....+.|..++..+++ .++..... ..+...+..... .....|-|.
T Consensus 12 ~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~--~qy~~in~--~~SsVT~~~~~~-~~~~L~cC~ 80 (89)
T PF06328_consen 12 SPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPG--SQYRVIND--TVSSVTLPNLNP-TGATLFCCK 80 (89)
T ss_dssp SSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTC--GCEEEEST--TEEEEEESS--S-SEEEEEEEE
T ss_pred CCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECCh--hHcceeCC--eEEEEEEccCCC-CCceEEEEE
Confidence 3477899999999997532 3346889988886654 34443321 224466666554 333345554
No 209
>PHA03189 UL14 tegument protein; Provisional
Probab=71.31 E-value=22 Score=22.12 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=16.8
Q ss_pred CCCeEEEEEeeeCCCceEeeEEE
Q psy2442 79 RDDAVYECVAENGVGDAVSAEAS 101 (111)
Q Consensus 79 ~d~g~y~c~~~~~~~~~~~~~~~ 101 (111)
+.+|.|.|...|..+......+.
T Consensus 143 ~taG~Y~CvLrN~tHglv~~rf~ 165 (348)
T PHA03189 143 STAGMYECVLRNETHGLVLQRFV 165 (348)
T ss_pred cccceEEEEeccccceeeeEEee
Confidence 78999999999987654344443
No 210
>PHA03283 envelope glycoprotein E; Provisional
Probab=66.20 E-value=37 Score=22.86 Aligned_cols=37 Identities=19% Similarity=0.094 Sum_probs=28.3
Q ss_pred eEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEEec
Q psy2442 68 SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106 (111)
Q Consensus 68 ~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~~ 106 (111)
..+.|.++.. ++.|.|.....+..+ .....+.+.|..
T Consensus 134 ~~l~I~~at~-~~aGVYtly~r~d~~-~~~~vflvtVk~ 170 (542)
T PHA03283 134 SVLQIQRATP-NIAGVYTLHVSSDGM-MKHSVFFVTVKK 170 (542)
T ss_pred CeeEEEeccc-ccCeEEEEEecCCCc-eEEEEEEEEecC
Confidence 4488899998 999999999887655 335666777766
No 211
>COG5475 Uncharacterized small protein [Function unknown]
Probab=63.57 E-value=11 Score=16.88 Aligned_cols=15 Identities=40% Similarity=0.713 Sum_probs=12.2
Q ss_pred CCeEEEEEeeeCCCc
Q psy2442 80 DDAVYECVAENGVGD 94 (111)
Q Consensus 80 d~g~y~c~~~~~~~~ 94 (111)
..|.|.|...+..|.
T Consensus 27 s~Gmy~C~Wf~g~g~ 41 (60)
T COG5475 27 SDGMYECRWFDGYGV 41 (60)
T ss_pred cCCeEEEEEecCCCc
Confidence 349999999988764
No 212
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=54.18 E-value=4.2 Score=26.37 Aligned_cols=36 Identities=28% Similarity=0.250 Sum_probs=0.0
Q ss_pred EEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEEec
Q psy2442 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106 (111)
Q Consensus 70 l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~~ 106 (111)
|.|.+++. +|+|.|.....+.-+......+.+.|..
T Consensus 91 l~i~~a~~-~~~GvY~l~~~~~~~~~~~~~~~v~v~~ 126 (439)
T PF02480_consen 91 LSILNATE-QDSGVYTLYVRNDSGWAHQSVVFVTVKG 126 (439)
T ss_dssp -------------------------------------
T ss_pred eEEecccc-ccCeeEEEEecCCCCceEEEEEEEEEcC
Confidence 88899998 9999999988765544334455555554
No 213
>PHA03240 envelope glycoprotein M; Provisional
Probab=44.94 E-value=66 Score=19.07 Aligned_cols=27 Identities=11% Similarity=0.009 Sum_probs=16.6
Q ss_pred eeeecCCcEEEEEEEeccCCCeEEEEE
Q psy2442 20 QAVKAGGITSFYCIARGDPIPVIQWRK 46 (111)
Q Consensus 20 ~~~~~g~~~~l~c~~~~~~~~~~~w~~ 46 (111)
+....|+.++|.-.-.-.+...+.|+.
T Consensus 33 vt~r~G~nVTLga~~~lhpgq~v~Wy~ 59 (258)
T PHA03240 33 HTTREGDPLLLGGGHGLGAGQKAHWYK 59 (258)
T ss_pred cccccCCceeeCCcccCCCCCEEEEEe
Confidence 456678888875433223445788887
No 214
>PHA03286 envelope glycoprotein E; Provisional
Probab=39.39 E-value=1.2e+02 Score=20.38 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=29.2
Q ss_pred eEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442 68 SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105 (111)
Q Consensus 68 ~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~ 105 (111)
..+.+.++.. +.+|.|.....|..+......+.+.+.
T Consensus 127 ~~L~I~nAt~-qnaGiYtly~rnd~~~~~~~vflVtV~ 163 (492)
T PHA03286 127 KELTILNASS-QNAGIYIRYSRNGTRTAVMDVLVVWVS 163 (492)
T ss_pred CceEEeeccc-cccceEEEEEcCCCCcEEEEEEEEEEe
Confidence 4488889998 999999999988776655666777775
No 215
>PHA03282 envelope glycoprotein E; Provisional
Probab=36.97 E-value=1.3e+02 Score=20.31 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=18.2
Q ss_pred eEEEEccCCCCCCCeEEEEEeee
Q psy2442 68 SLLRIEPVRHARDDAVYECVAEN 90 (111)
Q Consensus 68 ~~l~~~~~~~~~d~g~y~c~~~~ 90 (111)
.++.|.++.. .|+|.|...+..
T Consensus 124 ~tl~l~~a~~-~DsG~Y~L~~~~ 145 (540)
T PHA03282 124 GTLVLREARE-TDSGMYVLSVSR 145 (540)
T ss_pred ceEEEeeccc-cCCceEEEEecC
Confidence 3488999998 999999998643
No 216
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=28.38 E-value=1.8e+02 Score=19.30 Aligned_cols=37 Identities=14% Similarity=0.184 Sum_probs=23.9
Q ss_pred eEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442 68 SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105 (111)
Q Consensus 68 ~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~ 105 (111)
..+.+.++.. .|.|.|.|.-.-.-.....+.+.+.++
T Consensus 81 Ysf~~~Nvs~-sdEGrYrCIFYLn~~EtyrH~I~vrVm 117 (500)
T PHA02914 81 YSFIEENIGE-HEDGDFKCIFYLGDNESHKHEILVRKA 117 (500)
T ss_pred eEEEecCccc-ccCCcEEEEEEeCCceeEEEEEEEEEc
Confidence 3377778888 999999997553322223556665554
No 217
>PHA03271 envelope glycoprotein C; Provisional
Probab=27.83 E-value=1.9e+02 Score=19.33 Aligned_cols=33 Identities=30% Similarity=0.494 Sum_probs=26.4
Q ss_pred eeeecCCcEEEEEEEeccCCC---eEEEEECCeecc
Q psy2442 20 QAVKAGGITSFYCIARGDPIP---VIQWRKNGKRVS 52 (111)
Q Consensus 20 ~~~~~g~~~~l~c~~~~~~~~---~~~w~~~~~~~~ 52 (111)
..+..|+...-.|.+....++ .+.|+.+|....
T Consensus 255 ~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~ 290 (490)
T PHA03271 255 PPVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIAT 290 (490)
T ss_pred CccccCCCceEEEEeeeecCCCceEEEEEeCCcccc
Confidence 357789999999998876554 688999988764
No 218
>KOG0613|consensus
Probab=26.36 E-value=1.1e+02 Score=23.29 Aligned_cols=75 Identities=11% Similarity=-0.016 Sum_probs=43.5
Q ss_pred eeeecCCcEEEEEEEeccCCCe-EEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCce
Q psy2442 20 QAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDA 95 (111)
Q Consensus 20 ~~~~~g~~~~l~c~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~ 95 (111)
+....+..+.+.|...+...+. +.|+.++.......................+..+.. .+.+.+.|.+.|..|..
T Consensus 344 v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~-~e~~~~~~~a~n~~g~~ 419 (1205)
T KOG0613|consen 344 VTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGP-GEGYFTRVPAVNKGGTE 419 (1205)
T ss_pred eccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCc-ccccccccceeccCCcc
Confidence 3445566778889888888774 888876554432211100000000111244455565 77888999999988764
No 219
>PHA00008 J DNA packaging protein
Probab=24.44 E-value=54 Score=11.87 Aligned_cols=11 Identities=18% Similarity=0.471 Sum_probs=7.4
Q ss_pred eEEEEECCeec
Q psy2442 41 VIQWRKNGKRV 51 (111)
Q Consensus 41 ~~~w~~~~~~~ 51 (111)
...||.+|.++
T Consensus 15 ARLWYVGGtQf 25 (26)
T PHA00008 15 ARLWYVGGTQF 25 (26)
T ss_pred eEEEEeccEEc
Confidence 45688877654
No 220
>PF15096 G6B: G6B family
Probab=24.10 E-value=41 Score=19.35 Aligned_cols=18 Identities=17% Similarity=0.492 Sum_probs=13.3
Q ss_pred eeecCCcEEEEEEEeccC
Q psy2442 21 AVKAGGITSFYCIARGDP 38 (111)
Q Consensus 21 ~~~~g~~~~l~c~~~~~~ 38 (111)
.-.+|+.+++.|.....+
T Consensus 7 eGrPGDRVnlSCvGVs~p 24 (224)
T PF15096_consen 7 EGRPGDRVNLSCVGVSHP 24 (224)
T ss_pred cCCCCCeeeeeeccCCCc
Confidence 446799999999865544
No 221
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=23.34 E-value=1.2e+02 Score=15.47 Aligned_cols=21 Identities=29% Similarity=0.763 Sum_probs=15.6
Q ss_pred cEEEEEE-EeccCCCeEEEEEC
Q psy2442 27 ITSFYCI-ARGDPIPVIQWRKN 47 (111)
Q Consensus 27 ~~~l~c~-~~~~~~~~~~w~~~ 47 (111)
.+.-.|. ..|.|++.+.|...
T Consensus 22 v~VA~CiSa~GrPpa~ItW~t~ 43 (98)
T cd05890 22 MLVATCVSANGKPPSVVRWDTR 43 (98)
T ss_pred EEEEEEEcCCCcCCcEeEEEcc
Confidence 3455788 57788889999854
No 222
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=21.72 E-value=54 Score=13.07 Aligned_cols=9 Identities=44% Similarity=0.870 Sum_probs=7.2
Q ss_pred CCCeEEEEE
Q psy2442 79 RDDAVYECV 87 (111)
Q Consensus 79 ~d~g~y~c~ 87 (111)
.+.|.|+|.
T Consensus 21 ~~dG~~yC~ 29 (36)
T PF11781_consen 21 SDDGFYYCD 29 (36)
T ss_pred ccCCEEEhh
Confidence 678899994
No 223
>PF13220 DUF4028: Protein of unknown function (DUF4028)
Probab=20.07 E-value=1.1e+02 Score=13.60 Aligned_cols=14 Identities=21% Similarity=0.534 Sum_probs=9.7
Q ss_pred CCeEEEEEeeeCCC
Q psy2442 80 DDAVYECVAENGVG 93 (111)
Q Consensus 80 d~g~y~c~~~~~~~ 93 (111)
.+..|.|.+.|.-|
T Consensus 9 ssnsflctvqnkng 22 (65)
T PF13220_consen 9 SSNSFLCTVQNKNG 22 (65)
T ss_pred CCCceEEEEecccH
Confidence 34578888887654
Done!