RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2442
(111 letters)
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 118 bits (298), Expect = 3e-35
Identities = 73/102 (71%), Positives = 84/102 (82%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
PPEI +P+NQ V+ GG+ SFYC ARGDP P I WRKNGK+VSGTQSRY V E P G S+
Sbjct: 6 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISI 65
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
LRIEPVR RDDA YECVAENGVGDAVSA+A+LT+YEG++ P
Sbjct: 66 LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTP 107
Score = 86.0 bits (213), Expect = 2e-22
Identities = 34/97 (35%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P IT P + ++ G C A G+P P I W KN +V + RY + G
Sbjct: 110 FPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSL----KDGF- 164
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L+IE R D YECVAEN +G S +L V
Sbjct: 165 LQIENSR-EEDQGKYECVAENSMGTEHSKATNLYVKV 200
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 105 bits (264), Expect = 3e-30
Identities = 30/101 (29%), Positives = 41/101 (40%), Gaps = 4/101 (3%)
Query: 6 RFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPP 65
+ P IT + +F C P P I W +N + +RY ++
Sbjct: 3 KLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIR---E 59
Query: 66 GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
G LL I V DD +Y C A NGVG AV + +L V
Sbjct: 60 NGQLLTILSVE-DSDDGIYCCTANNGVGGAVESCGALQVKM 99
Score = 89.4 bits (222), Expect = 7e-24
Identities = 33/95 (34%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P+IT P N + G C G+P P + W K + SR V E GS
Sbjct: 100 KPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALR-ENSRIAVLE---SGS- 154
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
LRI V+ D Y CVA+N +G A S L V
Sbjct: 155 LRIHNVQKE-DAGQYRCVAKNSLGTAYSKLVKLEV 188
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 106 bits (265), Expect = 4e-30
Identities = 46/102 (45%), Positives = 61/102 (59%), Gaps = 2/102 (1%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
PP T P +Q +GG+ SF C A GDP P I W K GK+VS Q +++ GS+
Sbjct: 6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVS-NQRFEVIEFDDGSGSV 64
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
LRI+P+R RD+A+YECVA N VG +S LTV ++ P
Sbjct: 65 LRIQPLRTPRDEAIYECVASNNVG-EISVSTRLTVLREDQIP 105
Score = 96.0 bits (239), Expect = 2e-26
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS- 68
P I + P+ + V+ + C A G+P P I W K+ V + + +++
Sbjct: 108 FPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIG 167
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
L+IE + D YECVA N G SA A+L V +
Sbjct: 168 ALQIEQSEES-DQGKYECVATNSAGTRYSAPANLYVRGTKHHH 209
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 101 bits (254), Expect = 1e-29
Identities = 41/99 (41%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP-PGGS 68
PP I P + V G + C A G P P I+W K G+RV + P GS
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 69 L--LRIEPVRHARDDA-VYECVAENGVGDAVSAEASLTV 104
L LRI R +R D VY CVA N +G+AVS +ASL V
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 106 bits (265), Expect = 2e-29
Identities = 42/102 (41%), Positives = 62/102 (60%), Gaps = 2/102 (1%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
PP P++Q +GG+ SF C A GDP P + W K GK+V+ +Q ++ G++
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVN-SQRFETIEFDESAGAV 64
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
LRI+P+R RD+ VYECVA+N VG ++ A LTV ++ P
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVG-EITVHAKLTVLREDQLP 105
Score = 91.0 bits (226), Expect = 1e-23
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P I + P+ + V+ + C A G+P P I W K+ V + S +++ G
Sbjct: 108 FPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGA-- 165
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
L+IE D YECVA N G S+ A+L V P
Sbjct: 166 LQIESSE-ETDQGKYECVATNSAGVRYSSPANLYVRVQNVAP 206
Score = 82.2 bits (203), Expect = 2e-20
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P ++ P + + GG + C+A G P+P ++W + + ++ P G ++
Sbjct: 205 APRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDD------MPVGRNV 258
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L + +D A Y CVA + +G A A +TV
Sbjct: 259 LEL---TDVKDSANYTCVAMSSLGVI-EAVAQITVKS 291
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 99.5 bits (248), Expect = 6e-28
Identities = 24/97 (24%), Positives = 32/97 (32%), Gaps = 1/97 (1%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
++ P V G C G P IQW K+G V Y+
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L ++ V D Y C E+G +S LTV
Sbjct: 62 LSLKSVER-SDAGRYWCQVEDGGETEISQPVWLTVEG 97
Score = 80.2 bits (198), Expect = 2e-20
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 13/96 (13%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGTQSRYMVQEFPPGGS 68
P T+ P++ AV C A G P PV I W + ++ G P S
Sbjct: 98 VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP---------APSPS 148
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
+L + V ++ C A N G A S A++ +
Sbjct: 149 VLNVTGV---TQSTMFSCEAHNLKGLASSRTATVHL 181
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 96.3 bits (240), Expect = 1e-27
Identities = 37/97 (38%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
PP I P NQ + G C A GDP+PVI W K G G R +QE G+
Sbjct: 8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQE---QGT- 63
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L+I+ +R D Y CVA + G S A L V E
Sbjct: 64 LQIKNLR-ISDTGTYTCVATSSSG-ETSWSAVLDVTE 98
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 96.4 bits (240), Expect = 1e-26
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 3/97 (3%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
++T+ + G F C A G+P + + G+++ + R +VQ+
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKII-STQRVVVQKEGVRSR- 59
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L I D +Y C A + G A L +Y+
Sbjct: 60 LTIYNAN-IEDAGIYRCQATDAKGQTQEATVVLEIYQ 95
Score = 76.4 bits (188), Expect = 7e-19
Identities = 14/95 (14%), Positives = 25/95 (26%), Gaps = 5/95 (5%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
Q K G C P P + W + + V+ +
Sbjct: 96 KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRF--AMLANNN- 152
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
L+I + + D+ +Y C + V
Sbjct: 153 LQILNINKS-DEGIYRCEGRVEAR-GEIDFRDIIV 185
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 93.2 bits (232), Expect = 3e-26
Identities = 31/102 (30%), Positives = 42/102 (41%), Gaps = 3/102 (2%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P P + V+ G + C G P P + W+ +GK V S + + G
Sbjct: 9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVR-PDSAHKMLVRENGVHS 67
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
L IEPV +RD +Y C+A N G S L V E P
Sbjct: 68 LIIEPVT-SRDAGIYTCIATNRAGQN-SFSLELVVAAKESGP 107
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 95.3 bits (237), Expect = 3e-26
Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 3/99 (3%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDP-IPVIQWRK-NGKRVSGTQSRYMVQEFPPGG 67
++ + P + G F C GD I W NG+++S Q R V
Sbjct: 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61
Query: 68 SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
S L I D +Y+CV G A ++ +++
Sbjct: 62 STLTIYNAN-IDDAGIYKCVVTAEDGTQSEATVNVKIFQ 99
Score = 77.6 bits (191), Expect = 3e-19
Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 7/96 (7%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQS-RYMVQEFPPGGS 68
P Q K G C P I W+ G+ V + R++V +
Sbjct: 100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLS----NN 155
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
L+I ++ D+ Y C + V
Sbjct: 156 YLQIRGIK-KTDEGTYRCEGRILAR-GEINFKDIQV 189
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 91.6 bits (228), Expect = 1e-25
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
I +PR+ V G F C G+P+P + W + G+ +S T +R+ V +
Sbjct: 14 AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLS-TSARHQVTTTKYKST- 71
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
I V+ A D+ Y V EN G AE +LT+ +
Sbjct: 72 FEISSVQ-ASDEGNYSVVVENSEG-KQEAEFTLTIQK 106
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 93.6 bits (233), Expect = 1e-25
Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P RN V+ + C G P P+++W + GK + +Y +QEF G
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEE 109
L I V D VY+ A N G +VS ASL V +
Sbjct: 64 LIIASVT-DDDATVYQVRATNQGG-SVSGTASLEVEVPAK 101
Score = 83.6 bits (207), Expect = 1e-21
Identities = 22/99 (22%), Positives = 30/99 (30%), Gaps = 3/99 (3%)
Query: 8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
+ P+ G + S G P PVI W+K + Y V
Sbjct: 102 IHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN-GHYQVIVTRSFT 160
Query: 68 SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
SL+ V D Y A+N G L V +
Sbjct: 161 SLVFPNGVERK-DAGFYVVCAKNRFGID-QKTVELDVAD 197
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 93.8 bits (233), Expect = 2e-25
Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG-S 68
P I P + VK + C G P P I+W K+G+ VS + + +F G
Sbjct: 9 SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
R + +D Y CVA+N VG AVS ASL +
Sbjct: 69 FYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI 104
Score = 84.5 bits (209), Expect = 1e-21
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 7/102 (6%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCI-ARGDPIPVIQWRKNGKRVSGTQSRYMVQE----FP 64
+ + P++ V G C +G P P + W K+G + ++
Sbjct: 108 RDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIV 167
Query: 65 PGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
GG+L I V D+ Y+C+A+N VG S+ A L V
Sbjct: 168 DGGNL-LISNVE-PIDEGNYKCIAQNLVGTRESSYAKLIVQV 207
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 90.9 bits (226), Expect = 2e-25
Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 2/102 (1%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P ++ ++ + G +F C G+P P I W K+GK++S Y +Q G
Sbjct: 8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 67
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
L DD Y +A N G S L V P
Sbjct: 68 LHTTASTLD-DDGNYTIMAANPQGRI-SCTGRLMVQAVNSGP 107
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 90.5 bits (225), Expect = 2e-25
Identities = 30/101 (29%), Positives = 39/101 (38%), Gaps = 3/101 (2%)
Query: 8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
+ PP P N ++ G G P P + W NG+ V M+ G
Sbjct: 3 MGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVS-EKGL 61
Query: 68 SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGE 108
L E VR A D Y CVA+N G+A + L V E
Sbjct: 62 HSLIFEVVR-ASDAGAYACVAKNRAGEA-TFTVQLDVLAKE 100
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 92.5 bits (230), Expect = 4e-25
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 2/102 (1%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P T ++ V G +F G P+P + W ++G+ +S + + F G +
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
L I V + Y A NG G ++ A L V P
Sbjct: 65 LTIPAVT-KANSGRYSLKATNGSG-QATSTAELLVKAETAPP 104
Score = 83.2 bits (206), Expect = 2e-21
Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 4/95 (4%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
PP R ++ V+ G G P PV+++ ++G + + + QE
Sbjct: 103 PPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQE--GDLYS 160
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
L I D Y A N VG A ++ A L V
Sbjct: 161 LLIAEAYPE-DSGTYSVNATNSVGRA-TSTAELLV 193
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 89.8 bits (223), Expect = 6e-25
Identities = 35/97 (36%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
PP I P NQ V G C+A G P+P I WRK+G VS SR E G
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLE---NGV- 63
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L+I + D Y C+A G+A + A + V E
Sbjct: 64 LQIRYAK-LGDTGRYTCIASTPSGEA-TWSAYIEVQE 98
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 89.8 bits (223), Expect = 6e-25
Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 2/105 (1%)
Query: 2 YRKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQ 61
+ P +P+++ V G C P P + W++N + V R +
Sbjct: 7 HHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLY 66
Query: 62 EFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
+ G L I+ V +D Y A N G + L V
Sbjct: 67 QDNTGRVTLLIKDVN-KKDAGWYTVSAVNEAG-VTTCNTRLDVTA 109
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 92.3 bits (229), Expect = 8e-25
Identities = 25/97 (25%), Positives = 34/97 (35%), Gaps = 12/97 (12%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
+IT+ P ++AV AG C A G P QW K K + + S
Sbjct: 18 GSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNT-----------SE 66
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L V +D Y C N S + L V +
Sbjct: 67 LIFNAVH-VKDAGFYVCRVNNNFTFEFSQWSQLDVCD 102
Score = 79.9 bits (197), Expect = 5e-20
Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 12/97 (12%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
+I + P +Q + G C+A G PIP QW KN ++ L
Sbjct: 118 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-----------TKKL 166
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
+ V Y C N S + + + E
Sbjct: 167 YMVPYVD-LEHQGTYWCHVYNDRDSQDSKKVEIIIDE 202
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 89.3 bits (222), Expect = 8e-25
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 6/102 (5%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P IT NQ G C A G+P P I W K+ + + S +++ G
Sbjct: 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVED-SGIVLK---DGNRN 65
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
L I VR D+ +Y C A + +G EA + +EK
Sbjct: 66 LTIRRVRKE-DEGLYTCQACSVLG-CAKVEAFFIIEGAQEKT 105
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 91.4 bits (227), Expect = 1e-24
Identities = 43/103 (41%), Positives = 53/103 (51%), Gaps = 10/103 (9%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVS----GTQSRYMVQEFPP 65
PP I P + V G + C A G P P I+W K G+RV +S M+ P
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLL---P 65
Query: 66 GGSL--LRIEPVRHARDDA-VYECVAENGVGDAVSAEASLTVY 105
GSL LRI R +R D VY CVA N +G+AVS +ASL V
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVA 108
Score = 85.6 bits (212), Expect = 3e-22
Identities = 31/98 (31%), Positives = 38/98 (38%), Gaps = 7/98 (7%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
+ P + V G C RG P P I W+K+G + R + GG
Sbjct: 111 RDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITI----RGGK 166
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L I R D Y CV N VG+ S A LTV E
Sbjct: 167 L-MITYTR-KSDAGKYVCVGTNMVGERESEVAELTVLE 202
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 87.9 bits (218), Expect = 2e-24
Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 13/100 (13%)
Query: 8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
L+ ++ + P AV GG + C P P I W K+G + P
Sbjct: 8 LEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLP-----------LPPS 56
Query: 68 SLLRIEPVRHARDDAVYECVAENGVGDA-VSAEASLTVYE 106
+L + + D Y CVA + S S+++ E
Sbjct: 57 PVLILPEIGPQ-DQGTYSCVATHSSHGPQESRAVSISIIE 95
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 87.7 bits (218), Expect = 2e-24
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P I ++ V + + F A G+P P W K+GK + TQ GG
Sbjct: 6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAI--TQGGKYKLSEDKGGFF 63
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
L I D +Y C +N G +VS+ LT+
Sbjct: 64 LEIHKTD-TSDSGLYTCTVKNSAG-SVSSSCKLTI 96
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 87.0 bits (216), Expect = 5e-24
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P + ++ AV G C RG P+P I W NG+ + +S G +
Sbjct: 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCE-----AGVAE 65
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
L I+ D Y C+AEN +G VS A +TV+
Sbjct: 66 LHIQDAL-PEDHGTYTCLAENALG-QVSCSAWVTVH 99
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 93.1 bits (231), Expect = 5e-24
Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 1/104 (0%)
Query: 3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQE 62
+ P ++ KAG +T YC+ +P+ + KNGK V+G + +
Sbjct: 205 DNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRH 264
Query: 63 FPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
G L + D+ VY C +NGVG LTV
Sbjct: 265 NRTSGKRLLFKTTL-PEDEGVYTCEVDNGVGKPQKHSLKLTVVS 307
Score = 82.3 bits (203), Expect = 5e-20
Identities = 30/102 (29%), Positives = 41/102 (40%), Gaps = 10/102 (9%)
Query: 4 KVRFLDPPEITLRPRNQ-AVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQE 62
K+ + P+ +P VK G + C G P P + W N K +SG R V
Sbjct: 302 KLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSG--GRATVT- 358
Query: 63 FPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
S L I+ V++ D Y C A N GD E + V
Sbjct: 359 ----DSGLVIKGVKNG-DKGYYGCRATNEHGD-KYFETLVQV 394
Score = 78.8 bits (194), Expect = 9e-19
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGTQSRYMVQEFPPGGS 68
P + +P + T CI G+ V W+K+GK + + ++ GS
Sbjct: 6 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALR--KDEGS 63
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
L + + D+ Y+C AE G A S S
Sbjct: 64 L-VFLRPQAS-DEGHYQCFAETPAGVASSRVISFRK 97
Score = 68.0 bits (166), Expect = 6e-15
Identities = 20/110 (18%), Positives = 29/110 (26%), Gaps = 13/110 (11%)
Query: 4 KVRFLDPPEITLRPRNQAVKAGGITSFYC-IARGDPIPVIQWRKNGK------RVSGTQS 56
R + + G C + P P+I W+K V+
Sbjct: 94 SFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDR 153
Query: 57 RYMVQEFPPGGSLLRIEPVR--HARDDAVYECVAENGVGDAVSAEASLTV 104
R P G+L V D Y C A+N D +
Sbjct: 154 RITAG---PDGNL-YFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEI 199
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 89.1 bits (221), Expect = 8e-24
Identities = 27/98 (27%), Positives = 36/98 (36%), Gaps = 4/98 (4%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVS---GTQSRYMVQEFPPG 66
P+IT R++ G YC + G P P WRK V S
Sbjct: 92 APDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKEN 151
Query: 67 GSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
+ L I ++ D YEC A N +G + S L V
Sbjct: 152 YTELNIVNLQITEDPGEYECNATNSIG-SASVSTVLRV 188
Score = 73.7 bits (181), Expect = 8e-18
Identities = 19/100 (19%), Positives = 29/100 (29%), Gaps = 12/100 (12%)
Query: 9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQ--WRKNGKRVSGTQSRYMVQEFPPG 66
+ P I + + C ++ W KNG ++ T+
Sbjct: 2 NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA-------S 54
Query: 67 GSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
RI R A D Y CV A A++ V
Sbjct: 55 NMEYRINKPR-AEDSGEYHCVYHFVSA--PKANATIEVKA 91
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 85.9 bits (213), Expect = 1e-23
Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 12/97 (12%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
+I + P +Q + G C+A G PIP QW KN ++ + L
Sbjct: 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK-----------L 51
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
+ V Y C N S + + + E
Sbjct: 52 YMVPYVD-LEHQGTYWCHVYNDRDSQDSKKVEIIIDE 87
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 85.8 bits (213), Expect = 2e-23
Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
PP + +Q+V+ G +G+P PV+ W +N + V Q R+ + G
Sbjct: 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEA-EGGLCR 63
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGE 108
LRI D Y C A N G EA L V GE
Sbjct: 64 LRILAAE-RGDAGFYTCKAVNEYGAR-QCEARLEV-RGE 99
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 90.2 bits (224), Expect = 2e-23
Identities = 25/97 (25%), Positives = 35/97 (36%), Gaps = 4/97 (4%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
PP L+P + + G +F C G I W K+ + + Y + +
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIR-PGGNYKMTLVENTAT- 62
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L + V D Y C A N G S A L V E
Sbjct: 63 LTVLKVTKG-DAGQYTCYASNVAGKD-SCSAQLGVQE 97
Score = 85.6 bits (212), Expect = 9e-22
Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 4/101 (3%)
Query: 4 KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF 63
++ +PP +P G C +G P + W K+ + + + ++ E
Sbjct: 186 SLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSE- 244
Query: 64 PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
+ + I V A D Y+C A N VG + S+T+
Sbjct: 245 -NFLTSIHILNVDSA-DIGEYQCKASNDVGSY-TCVGSITL 282
Score = 82.1 bits (203), Expect = 2e-20
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 5/104 (4%)
Query: 4 KVRFLDPPEITLRPR-NQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQE 62
++ +PP + ++ VK T + C G P + W K+ + S++ +
Sbjct: 92 QLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQ-ESSKFRMSF 150
Query: 63 FPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L + + D Y C A N G + S+ SL V E
Sbjct: 151 VESVAV-LEMYNLS-VEDSGDYTCEAHNAAG-SASSSTSLKVKE 191
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 88.7 bits (220), Expect = 8e-23
Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P RN V+ + C G P P+++W + GK + +Y +QEF G
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L I V D VY+ A N G +VS ASL V
Sbjct: 64 LIIASVTDD-DATVYQVRATNQGG-SVSGTASLEVEV 98
Score = 74.4 bits (183), Expect = 2e-17
Identities = 22/99 (22%), Positives = 31/99 (31%), Gaps = 3/99 (3%)
Query: 8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
+ P+ G + S G P PVI W+K + Y V
Sbjct: 102 IHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN-GHYQVIVTRSFT 160
Query: 68 SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
SL+ V +D Y A+N G L V +
Sbjct: 161 SLVFPNGVER-KDAGFYVVCAKNRFGID-QKTVELDVAD 197
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 85.7 bits (212), Expect = 8e-23
Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 3/108 (2%)
Query: 4 KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF 63
+ + P T + V G F C G P P + W K+ V + + +
Sbjct: 35 EEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKES-RHFQIDYD 93
Query: 64 PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
G L I V DDA Y C A N +G+A + A L V ++
Sbjct: 94 EEGNCSLTISEVC-GDDDAKYTCKAVNSLGEA-TCTAELLVETMGKEG 139
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 88.3 bits (219), Expect = 1e-22
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
++T+ + G F C A G+P + + G+++ T R +VQ+ S
Sbjct: 4 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIIST-QRVVVQK-EGVRSR 61
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L I D +Y C A + G A L +Y+
Sbjct: 62 LTIYNANIE-DAGIYRCQATDAKGQTQEATVVLEIYQ 97
Score = 84.5 bits (209), Expect = 2e-21
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 10 PPEITL--RPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
PP I++ + N + G +F C A G P P I W +NGK + +Y+++
Sbjct: 192 PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN-EKYILKG---SN 247
Query: 68 SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
+ L + + ++ D Y C A N G+ +A L V+
Sbjct: 248 TELTVRNIINS-DGGPYVCRATNKAGED-EKQAFLQVFV 284
Score = 77.9 bits (192), Expect = 8e-19
Identities = 14/102 (13%), Positives = 29/102 (28%), Gaps = 6/102 (5%)
Query: 4 KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQS-RYMVQE 62
+ Q K G C P P + W + + V+ R+ +
Sbjct: 92 VLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA 151
Query: 63 FPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
+ L+I + D+ +Y C + + +
Sbjct: 152 ---NNN-LQILNIN-KSDEGIYRCEGRVEARGEIDFRDIIVI 188
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 83.1 bits (206), Expect = 1e-22
Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
PP+I P + ++ G + + C G+P P + W G+++ + E +
Sbjct: 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTT 64
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
L I V+ +D +Y N G SA ++ +
Sbjct: 65 LIIMDVQ-KQDGGLYTLSLGNEFGSD-SATVNIHI 97
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 83.3 bits (206), Expect = 2e-22
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
Query: 6 RFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPP 65
+ + ++ R AV A F C A G+P+P ++W KNGK + R +
Sbjct: 6 YWTNTEKM--EKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK-QEHRIGGYKVRN 62
Query: 66 GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
L +E V + D Y CV EN G +++ L V
Sbjct: 63 QHWSLIMESVVPS-DKGNYTCVVENEYG-SINHTYHLDV 99
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 83.2 bits (206), Expect = 2e-22
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
PP PR V +G C+ G+P PV+ W K G++++ ++ +
Sbjct: 13 PPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPAD--GAEHG 70
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L + D VY C A N G+A A A++TV E
Sbjct: 71 LLLTAAL-PTDAGVYVCRARNAAGEA-YAAAAVTVLE 105
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 88.7 bits (220), Expect = 2e-22
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 7/105 (6%)
Query: 4 KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQ--SRYMVQ 61
KV P + + G C GDP+P I W+KN + ++ SR +V
Sbjct: 115 KVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVL 174
Query: 62 EFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
P G+ L+I ++ D VY C A N EA + +
Sbjct: 175 ---PSGA-LQISRLQ-PGDSGVYRCSARNPASTRTGNEAEVRILS 214
Score = 86.8 bits (215), Expect = 1e-21
Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 7/102 (6%)
Query: 5 VRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP 64
+ L PP P N F C G P+P + W KNG V + +
Sbjct: 307 LTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVI-PSDYFQIVG-- 363
Query: 65 PGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
GS LRI V + D+ Y+CVAEN G+ + A L V +
Sbjct: 364 --GSNLRILGVVKS-DEGFYQCVAENEAGN-AQSSAQLIVPK 401
Score = 83.0 bits (205), Expect = 3e-20
Identities = 26/97 (26%), Positives = 32/97 (32%), Gaps = 6/97 (6%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
RP N G C G P P W + + + +Y + GGS
Sbjct: 221 QLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLL----GGSN 276
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L I V D Y CV +SA A LTV
Sbjct: 277 LLISNVT-DDDSGTYTCVVTYKNE-NISASAELTVLV 311
Score = 78.7 bits (194), Expect = 1e-18
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 9/103 (8%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGD-PIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
P + GG C A D +PVI+W+K+G ++ Q P GS
Sbjct: 21 SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQL--PNGS 78
Query: 69 LLRIEPVRHAR----DDAVYECVAENG-VGDAVSAEASLTVYE 106
L I+ + H+R D+ +Y+C A G G +S A + V
Sbjct: 79 -LLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAG 120
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 86.1 bits (213), Expect = 3e-22
Identities = 29/106 (27%), Positives = 41/106 (38%), Gaps = 5/106 (4%)
Query: 6 RFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPP 65
+ P + + AV A F C A G+P P I W KNG+ + R +
Sbjct: 13 YWTRPERM--DKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFR-GEHRIGGIKLRH 69
Query: 66 GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
L +E V + D Y CV EN G ++ +L V E
Sbjct: 70 QQWSLVMESVVPS-DRGNYTCVVENKFG-SIRQTYTLDVLERSPHR 113
Score = 78.4 bits (193), Expect = 3e-19
Identities = 27/112 (24%), Positives = 36/112 (32%), Gaps = 12/112 (10%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGK----------RVSGTQSRYM 59
P P NQ G F+C D P IQW K+ + T +
Sbjct: 114 PILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSW 173
Query: 60 VQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
+ E LR+ V D Y C A N +G A L+V+
Sbjct: 174 ISESVEADVRLRLANVSER-DGGEYLCRATNFIGVA-EKAFWLSVHGPRAAE 223
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 89.0 bits (220), Expect = 3e-22
Identities = 30/108 (27%), Positives = 41/108 (37%), Gaps = 6/108 (5%)
Query: 4 KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF 63
V P IT NQ G C A G+P P I W K+ + + +
Sbjct: 660 TVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD-- 717
Query: 64 PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
G L I VR D+ +Y C A + +G A EA + +EK
Sbjct: 718 --GNRNLTIRRVRKE-DEGLYTCQACSVLGCA-KVEAFFIIEGAQEKT 761
Score = 70.2 bits (171), Expect = 1e-15
Identities = 26/107 (24%), Positives = 36/107 (33%), Gaps = 12/107 (11%)
Query: 4 KVRFLDPPEITL---RPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMV 60
VR + P + G G P P I+W KNG + S + +
Sbjct: 321 FVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLE---SNHTI 377
Query: 61 QEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAV-SAEASLTVYE 106
+ G +L I V RD Y + N + S SL VY
Sbjct: 378 KA----GHVLTIMEVS-ERDTGNYTVILTNPISKEKQSHVVSLVVYV 419
Score = 61.3 bits (148), Expect = 2e-12
Identities = 19/105 (18%), Positives = 31/105 (29%), Gaps = 10/105 (9%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRK--------NGKRVSGTQSRYMVQ 61
+ + G C AR + I + + K V+
Sbjct: 224 YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS 283
Query: 62 EFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
E S L I+ V D +Y C A +G+ + V+E
Sbjct: 284 EMKKFLSTLTIDGVT-RSDQGLYTCAASSGLMTK-KNSTFVRVHE 326
Score = 60.5 bits (146), Expect = 3e-12
Identities = 18/99 (18%), Positives = 26/99 (26%), Gaps = 5/99 (5%)
Query: 8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
LD P ++++ +KA C RG W N +
Sbjct: 29 LDLPRLSIQKDILTIKANTTLQITC--RGQRDLDWLWPNNQSGSE-QRVEVTECSDGLFC 85
Query: 68 SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L I V D Y+C A + Y
Sbjct: 86 KTLTIPKVI-GNDTGAYKCFYRETDL-ASVIYVYVQDYR 122
Score = 58.2 bits (140), Expect = 2e-11
Identities = 22/124 (17%), Positives = 35/124 (28%), Gaps = 21/124 (16%)
Query: 4 KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQ-------- 55
PEITL+P Q S +C A + W K G +
Sbjct: 544 SFHVTRGPEITLQPDMQ-PTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPV 602
Query: 56 ----------SRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDA-VSAEASLTV 104
+ M ++ ++ +D Y C+A++ LTV
Sbjct: 603 CKNLDTLWKLNATMFSNSTNDILIMELKNAS-LQDQGDYVCLAQDRKTKKRHCVVRQLTV 661
Query: 105 YEGE 108
E
Sbjct: 662 LERV 665
Score = 50.1 bits (119), Expect = 1e-08
Identities = 23/141 (16%), Positives = 36/141 (25%), Gaps = 37/141 (26%)
Query: 4 KVRFLDPPEITLRPRNQ---AVKAGGITSFYCIARGDPIP-VIQWRKNGKRVSGTQSRYM 59
+ PP+I + + + G + C P P I W + +
Sbjct: 414 SLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQA 473
Query: 60 VQEFPP-------------------------------GGSLLRIEPVRHARDDAVYECVA 88
V P ++ + A A+Y+C A
Sbjct: 474 VSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQA-ANVSALYKCEA 532
Query: 89 ENGVGDAVSAEASLTVYEGEE 109
N VG S V G E
Sbjct: 533 VNKVGR-GERVISFHVTRGPE 552
Score = 48.2 bits (114), Expect = 5e-08
Identities = 9/105 (8%), Positives = 20/105 (19%), Gaps = 5/105 (4%)
Query: 7 FLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG 66
F+ C+ + V + ++ + +
Sbjct: 125 FIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWD---S 181
Query: 67 GSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
I + C A+ S + V G
Sbjct: 182 KKGFTIPSYM-ISYAGMVFCEAKINDESYQS-IMYIVVVVGYRIY 224
Score = 25.1 bits (54), Expect = 7.2
Identities = 4/22 (18%), Positives = 8/22 (36%), Gaps = 1/22 (4%)
Query: 83 VYECVAENGVGDAVSAEASLTV 104
++ CV + SL +
Sbjct: 11 LWLCVETRAASVGLP-SVSLDL 31
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 85.1 bits (211), Expect = 3e-22
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P I ++ K G C G P+P I+W + GK + ++ M +
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSD--GRTHT 64
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L + D+ VY C+A N VG+ + L +
Sbjct: 65 LTVMTEE-QEDEGVYTCIATNEVGEV-ETSSKLLLQA 99
Score = 76.3 bits (188), Expect = 9e-19
Identities = 16/106 (15%), Positives = 32/106 (30%), Gaps = 6/106 (5%)
Query: 4 KVRFLDPPEITLR---PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMV 60
K+ P+ G + + G P+P + W K + S +
Sbjct: 94 KLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLL--QNSENIT 151
Query: 61 QEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
E + L ++ V+ Y+ N G A + + +
Sbjct: 152 IENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTV-DAILDVEIQD 196
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 88.7 bits (220), Expect = 4e-22
Identities = 25/97 (25%), Positives = 35/97 (36%), Gaps = 4/97 (4%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
PP L+P + + G +F C G I W K+ + + + M +
Sbjct: 197 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVEN--TAT 254
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L + V D Y C A N G S A L V E
Sbjct: 255 LTVLKVT-KGDAGQYTCYASNVAGKD-SCSAQLGVQE 289
Score = 83.3 bits (206), Expect = 2e-20
Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 4/104 (3%)
Query: 8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
++PP + G + C G P I W K ++ + Y +Q
Sbjct: 3 MEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLR-SAPAYKMQFKNNVA 61
Query: 68 SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
S L I V H+ D Y C AEN VG S A L + E + P
Sbjct: 62 S-LVINKVDHS-DVGEYTCKAENSVGAVAS-SAVLVIKERKLPP 102
Score = 82.5 bits (204), Expect = 5e-20
Identities = 15/99 (15%), Positives = 28/99 (28%), Gaps = 3/99 (3%)
Query: 8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
PP + + + G G + W K+ + +
Sbjct: 475 KAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIA 534
Query: 68 SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
+ L+ + Y C +N G A+L+V E
Sbjct: 535 T-LQFSRAE-PANAGKYTCQIKNEAGTQ-ECFATLSVLE 570
Score = 80.2 bits (198), Expect = 3e-19
Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 5/104 (4%)
Query: 4 KVRFLDPPEITLRPR-NQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQE 62
++ +PP + ++ VK T + C G P + W K+ + S++ +
Sbjct: 284 QLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQ-ESSKFRMSF 342
Query: 63 FPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L + + D Y C A N G A S+ SL V E
Sbjct: 343 VESVAV-LEMYNLSVE-DSGDYTCEAHNAAGSA-SSSTSLKVKE 383
Score = 80.2 bits (198), Expect = 4e-19
Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 4/103 (3%)
Query: 4 KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF 63
++ +PP +P G C +G P + W K+ + + + +Y +
Sbjct: 378 SLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELR-SGKKYKIMSE 436
Query: 64 PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
S + I V + D Y+C A N VG + S+T+
Sbjct: 437 NFLTS-IHILNVD-SADIGEYQCKASNDVGSD-TCVGSITLKA 476
Score = 78.7 bits (194), Expect = 1e-18
Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 4/102 (3%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
PP + ++ G +F C G + W K+G+ + + +
Sbjct: 101 PPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLK-DDANLQTSFIHNVAT- 158
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
L+I Y C A N +G A S+ A LT+ E E P
Sbjct: 159 LQILQTD-QSHVGQYNCSASNPLGTA-SSSAKLTLSEHEVPP 198
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 84.4 bits (209), Expect = 4e-22
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 10 PPEITL--RPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
PP I++ + N + G +F C A G P P I W +NGK + +Y+++
Sbjct: 96 PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN-EKYILK---GSN 151
Query: 68 SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
+ L + + D Y C A N G+ +A L V+
Sbjct: 152 TELTVRNII-NSDGGPYVCRATNKAGED-EKQAFLQVF 187
Score = 71.7 bits (176), Expect = 4e-17
Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 6/98 (6%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQS-RYMVQEFPPGGS 68
Q K G C P P + W + + V+ R+ + +
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA---NNN 58
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L+I + D+ +Y C + + +
Sbjct: 59 -LQILNIN-KSDEGIYRCEGRVEARGEIDFRDIIVIVN 94
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 87.6 bits (217), Expect = 6e-22
Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 5/103 (4%)
Query: 4 KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF 63
VR P P+N + G C A G+P P +QW NG+ + +
Sbjct: 306 SVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNRE-- 363
Query: 64 PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
G + + AVY+C N G + A A ++V +
Sbjct: 364 -VAGDTIIFRDTQ-ISSRAVYQCNTSNEHG-YLLANAFVSVLD 403
Score = 81.5 bits (201), Expect = 8e-20
Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 4/100 (4%)
Query: 10 PPEITLRP-RNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
PP IT + ++ V C A+G+P P W +N + + V G+
Sbjct: 16 PPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFN-IAKDPRVSMRRRSGT 74
Query: 69 L--LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L R + Y+C A N G A+S L V +
Sbjct: 75 LVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSK 114
Score = 79.9 bits (197), Expect = 3e-19
Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 10/105 (9%)
Query: 2 YRKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQ 61
R F+ P +Q V G CIA G P P I W K G + ++++
Sbjct: 217 ERTPSFMYPQG---TASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFEN- 272
Query: 62 EFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
LRI V D Y C+A N +G + S+ V
Sbjct: 273 ----FNKALRITNV-SEEDSGEYFCLASNKMGS-IRHTISVRVKA 311
Score = 65.3 bits (159), Expect = 6e-14
Identities = 18/103 (17%), Positives = 27/103 (26%), Gaps = 6/103 (5%)
Query: 4 KVRFLDPPEITLRPR-NQAVKAGGITSFYC-IARGDPIPVIQWRKNGKRVSGTQSRYMVQ 61
+++ P V+ G + C G P PVI W + R
Sbjct: 109 RLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQG 168
Query: 62 EFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
G L V Y C A + + T+
Sbjct: 169 ---HNGD-LYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTL 207
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 85.7 bits (212), Expect = 1e-21
Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 3/98 (3%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDP-IPVIQWRK-NGKRVSGTQSRYMVQEFPPGGS 68
++ + P + G F C GD I W NG+++S Q R V S
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L I D +Y+CV G A ++ +++
Sbjct: 63 TLTIYNANID-DAGIYKCVVTAEDGTQSEATVNVKIFQ 99
Score = 83.8 bits (207), Expect = 5e-21
Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 4/99 (4%)
Query: 10 PPEITLRPR--NQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
PP + R N G + C A G P P + W K+G+ + + F
Sbjct: 194 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS 253
Query: 68 SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
S L I V D+A Y C+AEN G+ A L V+
Sbjct: 254 SELTIRNV-DKNDEAEYVCIAENKAGEQ-DASIHLKVFA 290
Score = 76.8 bits (189), Expect = 2e-18
Identities = 16/99 (16%), Positives = 28/99 (28%), Gaps = 7/99 (7%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P Q K G C P I W+ G+ V + + +
Sbjct: 100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVL---SNNY 156
Query: 70 LRIEPVRHARDDA-VYECVAENGVGDAV-SAEASLTVYE 106
L+I ++ + D Y C + + + V
Sbjct: 157 LQIRGIK--KTDEGTYRCEGRILARGEINFKDIQVIVNV 193
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 83.7 bits (207), Expect = 1e-21
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 6/97 (6%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
+ + N + G +F C A G P P I W +NGK + + + +
Sbjct: 4 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK----GSNTE 59
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L + + D Y C A N G+ +A L V+
Sbjct: 60 LTVRNII-NSDGGPYVCRATNKAGED-EKQAFLQVFV 94
Score = 79.1 bits (195), Expect = 7e-20
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 10/107 (9%)
Query: 4 KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQS------R 57
++ P I + +N+ G + C A G+PIP I W++ + T+ R
Sbjct: 89 FLQVFVQPHII-QLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGR 147
Query: 58 YMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
V+ S L I+ V+ + D Y+C A + +G L +
Sbjct: 148 IEVKGQHGSSS-LHIKDVKLS-DSGRYDCEAASRIGGH-QKSMYLDI 191
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 83.0 bits (205), Expect = 2e-21
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P +I ++ ++ G + C A G+P+P I+WRK + + T E G++
Sbjct: 113 PADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPST------AEISTSGAV 166
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
L+I ++ D+ +YEC AEN G +A + V
Sbjct: 167 LKIFNIQ-LEDEGIYECEAENIRG-KDKHQARIYVQ 200
Score = 55.7 bits (134), Expect = 6e-11
Identities = 19/101 (18%), Positives = 26/101 (25%), Gaps = 9/101 (8%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQS--RYMVQEFPP 65
P VK G C +W N V T R++ Q
Sbjct: 8 DPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQ---T 64
Query: 66 GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
G+L I V A D Y C + + +
Sbjct: 65 NGNL-YIANVE-ASDKGNYSCFVSSPSITKSVFSKFIPLIP 103
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 83.8 bits (207), Expect = 2e-21
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 5/106 (4%)
Query: 6 RFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPP 65
+ + ++ R AV A F C A G+P+P ++W KNGK + R +
Sbjct: 17 YWTNTEKM--EKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK-QEHRIGGYKVRN 73
Query: 66 GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
L +E V + D Y CV EN G +++ L V E
Sbjct: 74 QHWSLIMESVVPS-DKGNYTCVVENEYG-SINHTYHLDVVERSRHR 117
Score = 78.4 bits (193), Expect = 2e-19
Identities = 27/111 (24%), Positives = 38/111 (34%), Gaps = 11/111 (9%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP----- 64
P P N + GG F C D P IQW K+ ++ +
Sbjct: 118 PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHS 177
Query: 65 ----PGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
+L + V A D Y C N +G A + A LTV ++ P
Sbjct: 178 GINSSNAEVLALFNVTEA-DAGEYICKVSNYIGQA-NQSAWLTVLPKQQAP 226
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 80.4 bits (199), Expect = 3e-21
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 4/102 (3%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P+I P +Q V+AG + G W K K++ + V E GS
Sbjct: 7 GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQES-EHMKV-ENSENGSK 64
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
L I R Y + EN +G A+ +LTV + + P
Sbjct: 65 LTILAAR-QEHCGCYTLLVENKLGSR-QAQVNLTVVDKPDPP 104
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 85.2 bits (211), Expect = 4e-21
Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 2/99 (2%)
Query: 8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
P+ G + C + +P I WR++ + + +
Sbjct: 98 EYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRK 157
Query: 68 SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
+L I P D Y C A N +G E L + +
Sbjct: 158 MILEIAPTS-DNDFGRYNCTATNHIG-TRFQEYILALAD 194
Score = 75.2 bits (185), Expect = 1e-17
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 10/100 (10%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQS------RYMVQEFP 64
P I + +N+ G + C A G+PIP I W++ + T+ R V+
Sbjct: 2 PHII-QLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 65 PGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
S L I+ V+ D Y+C A + +G L +
Sbjct: 61 GSSS-LHIKDVK-LSDSGRYDCEAASRIGGH-QKSMYLDI 97
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 84.9 bits (210), Expect = 4e-21
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 4 KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF 63
++ P+ + G + C+A G P P ++W ++G+ ++ +Q+R V
Sbjct: 288 RIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLA-SQNRIEVS-- 344
Query: 64 PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
G LR + D +Y+CVAEN G V A A LTV
Sbjct: 345 ---GGELRFSKLVLE-DSGMYQCVAENKHGT-VYASAELTV 380
Score = 84.1 bits (208), Expect = 8e-21
Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 7/98 (7%)
Query: 10 PPEITLRPRNQAVKAGGIT---SFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG 66
P +P + G + C AR +P +W+ NG +
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRL---VA 60
Query: 67 GSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
G L+ PV+ A+D Y+CVA N G VS EASL
Sbjct: 61 GDLVISNPVK-AKDAGSYQCVATNARGTVVSREASLRF 97
Score = 77.6 bits (191), Expect = 2e-18
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 10/97 (10%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P P + G + + C A G+P+P I+WRK + L
Sbjct: 207 PSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSS--------EPL 258
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L I+ V D+ YEC AEN G + + + ++
Sbjct: 259 LHIQNVD-FEDEGTYECEAENIKG-RDTYQGRIIIHA 293
Score = 54.5 bits (131), Expect = 3e-10
Identities = 22/109 (20%), Positives = 35/109 (32%), Gaps = 13/109 (11%)
Query: 4 KVRFLDPPEITLRPR-NQAVKAGGITSFYCIA-RGDPIPVIQWRKNGKR--VSGTQSRYM 59
+RF E + R + G F C P +W N + R++
Sbjct: 94 SLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFV 153
Query: 60 VQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDA----VSAEASLTV 104
Q G+ L I A D Y C A + + S + L++
Sbjct: 154 SQ---TTGN-LYIAKTE-ASDLGNYSCFATSHIDFITKSVFSKFSQLSL 197
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 82.2 bits (203), Expect = 5e-21
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 3/97 (3%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
+ P ++ G + C GDP P + W KN K ++ T ++ +
Sbjct: 117 ARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQT-DHCNLKFEAGRTAY 175
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
I V D Y V +N G +++ +++V+
Sbjct: 176 FTINGVS-TADSGKYGLVVKNKYGSE-TSDFTVSVFI 210
Score = 57.2 bits (138), Expect = 2e-11
Identities = 13/86 (15%), Positives = 22/86 (25%), Gaps = 4/86 (4%)
Query: 26 GITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYE 85
GI + + + W NG + S + L+I D Y
Sbjct: 19 GIQLYSFVTYYVEDLKVNWSHNGSAIR--YSDRVKTGVTGEQIWLQINEPT-PNDKGKYV 75
Query: 86 CVAENGVGDAVSAEASLTVYEGEEKP 111
+G L+ +E
Sbjct: 76 MELFDGKT-GHQKTVDLSGQAYDEAY 100
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 84.9 bits (210), Expect = 5e-21
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Query: 4 KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF 63
++ F P + V + C A G P P +W KNG + T+ R ++
Sbjct: 289 QLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLL-TRDRIQIE-- 345
Query: 64 PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
L I V D +Y+CVAEN G + A L+V
Sbjct: 346 ---QGTLNITIVN-LSDAGMYQCVAENKHGVI-FSSAELSV 381
Score = 81.4 bits (201), Expect = 8e-20
Identities = 27/98 (27%), Positives = 35/98 (35%), Gaps = 7/98 (7%)
Query: 10 PPEITLRPRNQAVKA---GGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG 66
P P + C +G+P P I+W+ NG V
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSV---VD 61
Query: 67 GSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
GSLL I +D Y+C+A N G VS EA L
Sbjct: 62 GSLL-INNPNKTQDAGTYQCIATNSFGTIVSREAKLQF 98
Score = 76.8 bits (189), Expect = 4e-18
Identities = 27/97 (27%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P P + G C A G+P+P I WR+ + ++R +
Sbjct: 205 PKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRH-----KSNGI 259
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L I + D YECVAEN G A+ LT Y
Sbjct: 260 LEIPNFQ-QEDAGSYECVAENSRG-KNVAKGQLTFYA 294
Score = 61.4 bits (149), Expect = 1e-12
Identities = 21/103 (20%), Positives = 30/103 (29%), Gaps = 7/103 (6%)
Query: 4 KVRFLDPPEITLRPR-NQAVKAGGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQSRYMVQ 61
K++F R R +V+ G C W N R++ Q
Sbjct: 95 KLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQ 154
Query: 62 EFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
G+ L I V D Y CV N V + +
Sbjct: 155 ---ETGN-LYIAKVE-KSDVGNYTCVVTNTVTNHKVLGPPTPL 192
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 83.8 bits (207), Expect = 8e-21
Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 3/97 (3%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
+ P ++ G + C GDP P + W KN K ++ ++ +
Sbjct: 222 ARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASD-DHCNLKFEAGRTAY 280
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
I V D Y V +N G +++ +++V+
Sbjct: 281 FTINGVS-TADSGKYGLVVKNKYGSE-TSDFTVSVFI 315
Score = 71.1 bits (174), Expect = 3e-16
Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 8/101 (7%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARG-DPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
P + V C I W K+ + +S ++ +F G
Sbjct: 7 GPHFVEYLSWE-VTGECNVLLKCKVANIKKETHIVWYKDEREIS-VDEKH---DFKDGIC 61
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEE 109
L I +D +YE + ++ G + L +E
Sbjct: 62 TLLITEFS-KKDAGIYEVILKDDRGKD-KSRLKLVDEAFKE 100
Score = 59.5 bits (144), Expect = 5e-12
Identities = 15/118 (12%), Positives = 29/118 (24%), Gaps = 14/118 (11%)
Query: 4 KVRFLDPPEITLRPRNQAVKAG----------GITSFYCIARGDPIPVIQWRKNGKRVSG 53
K+ E+ + + + GI + + + W NG +
Sbjct: 92 KLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIR- 150
Query: 54 TQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
S + L+I D Y +G L+ +E
Sbjct: 151 -YSDRVKTGVTGEQIWLQINEPT-PNDKGKYVMELFDGKT-GHQKTVDLSGQAYDEAY 205
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 78.1 bits (193), Expect = 2e-20
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 3/97 (3%)
Query: 8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
++ P+I R ++Q V G F G P P +W KNG ++ + Y
Sbjct: 3 MEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWP-EDNV 61
Query: 68 SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
L I V D A A N G+ S+ A L V
Sbjct: 62 CELVIRDVT-GEDSASIMVKAINIAGET-SSHAFLLV 96
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 81.0 bits (200), Expect = 2e-20
Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 3/108 (2%)
Query: 4 KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF 63
+ + P++ P G + C P I W ++G+ + + +
Sbjct: 13 RGSHMYAPKLQG-PVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYN 71
Query: 64 PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
P S L + P D Y C A N +G S E L + P
Sbjct: 72 TPSASYLEVTPDS-ENDFGNYNCTAVNRIGQE-SLEFILVQADTPSSP 117
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 83.1 bits (205), Expect = 3e-20
Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 14/101 (13%)
Query: 4 KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF 63
+ P + P Q V G F C G+PI + W K+GK +
Sbjct: 301 VLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIG----------- 349
Query: 64 PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
S+LRIE V+ D +Y+C N A A A L +
Sbjct: 350 -HSESVLRIESVKKE-DKGMYQCFVRNDRESA-EASAELKL 387
Score = 79.2 bits (195), Expect = 6e-19
Identities = 25/97 (25%), Positives = 34/97 (35%), Gaps = 2/97 (2%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P L + + S C A+G P P +W K + + Q+ +
Sbjct: 212 PRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGT 271
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L I+ D Y CV N VG S E LTV
Sbjct: 272 LIIKDAV-VEDSGKYLCVVNNSVGG-ESVETVLTVTA 306
Score = 73.4 bits (180), Expect = 6e-17
Identities = 23/100 (23%), Positives = 32/100 (32%), Gaps = 7/100 (7%)
Query: 10 PPEITLRPRNQ-AVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
P P N+ C A G+P+P I W ++ G G
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQI--SSDGK 60
Query: 69 L----LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
L R E R VY C+A N G +S + +
Sbjct: 61 LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRA 100
Score = 56.9 bits (137), Expect = 5e-11
Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 11/108 (10%)
Query: 4 KVRFLDPPEITLRPRNQAVKAGGITSFYCIAR---GDPIPVIQWRKNGKRV----SGTQS 56
VR + + V G C+ D + V+ W + + +
Sbjct: 97 HVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDG 156
Query: 57 RYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
+Y+V P G L I V Y+C ++ + A+
Sbjct: 157 KYLVL---PSGEL-HIREVGPEDGYKSYQCRTKHRLTGETRLSATKGR 200
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 79.9 bits (197), Expect = 3e-20
Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 11/102 (10%)
Query: 4 KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGTQSRYMVQE 62
V P P ++ V A + C A+G P PV + W ++ ++
Sbjct: 100 YVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH----- 154
Query: 63 FPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
P SL V + + C A N G S A++TV
Sbjct: 155 -GPQRSLH----VPGLNKTSSFSCEAHNAKGVTTSRTATITV 191
Score = 78.0 bits (192), Expect = 2e-19
Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 9/106 (8%)
Query: 9 DPPEITLRPRNQAVKAGGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQSRYM-------V 60
+ P N G + C P + W ++G+ + S
Sbjct: 1 EESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDE 60
Query: 61 QEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
Q+ S LRI ++ + D Y+C+ G VS + +
Sbjct: 61 QDDWIVVSQLRITSLQLS-DTGQYQCLVFLGHQTFVSQPGYVGLEG 105
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 83.1 bits (205), Expect = 3e-20
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP--- 64
DPP I + + ++ G C+A G+P P I W +GK+++ RY V ++
Sbjct: 427 FDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIA-NNDRYQVGQYVTVN 485
Query: 65 -PGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
S L I V A D +Y+C+A++ VG A A L VY
Sbjct: 486 GDVVSYLNITSVH-ANDGGLYKCIAKSKVGVA-EHSAKLNVYG 526
Score = 81.5 bits (201), Expect = 1e-19
Identities = 27/103 (26%), Positives = 40/103 (38%), Gaps = 6/103 (5%)
Query: 4 KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF 63
K+ P I + +A+ AG C G PI I W ++ + + + V
Sbjct: 521 KLNVYGLPYIR-QMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALP-INRKQKVFP- 577
Query: 64 PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
G+ L IE V D A Y CVA+N G + + V
Sbjct: 578 --NGT-LIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMV 617
Score = 80.8 bits (199), Expect = 2e-19
Identities = 29/107 (27%), Positives = 41/107 (38%), Gaps = 14/107 (13%)
Query: 5 VRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP 64
+ P + P Q V G F C G+PI + W K+GK +
Sbjct: 338 LTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIG------------ 385
Query: 65 PGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
S+LRIE V+ D +Y+C N A A A L + + P
Sbjct: 386 HSESVLRIESVK-KEDKGMYQCFVRNDRESA-EASAELKLGGRFDPP 430
Score = 78.4 bits (193), Expect = 1e-18
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
Query: 9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP--PG 66
PP L P ++A G C A G P P + W+K G +
Sbjct: 713 VPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEE 772
Query: 67 GSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
G+ L ++ ++ ++ Y C A NG+G +SA ++V
Sbjct: 773 GT-LHVDNIQK-TNEGYYLCEAINGIGSGLSAVIMISV 808
Score = 77.3 bits (190), Expect = 4e-18
Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 3/98 (3%)
Query: 10 PPEITLRPR-NQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
P ++L + + C A+G P+PV +W K + + Q+ +
Sbjct: 247 PKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSG 306
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L I+ D Y CV N VG S E LTV
Sbjct: 307 TLIIKDAV-VEDSGKYLCVVNNSVGGE-SVETVLTVTA 342
Score = 70.3 bits (172), Expect = 1e-15
Identities = 25/103 (24%), Positives = 33/103 (32%), Gaps = 9/103 (8%)
Query: 10 PPEITLRPRN-QAVKAGGITSFYCIARGDPIPVIQW-RKNGKRVSGTQSRYMVQEFPPGG 67
P P N C A G+P+P I W R +G V + G
Sbjct: 38 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQIS---SDG 94
Query: 68 SL----LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L R E R VY C+A N G +S + +
Sbjct: 95 KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVV 137
Score = 68.0 bits (166), Expect = 6e-15
Identities = 24/98 (24%), Positives = 34/98 (34%), Gaps = 4/98 (4%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGTQSRYMVQEFPPGGS 68
P I + G + +C G +P+ I W +G+ +S GS
Sbjct: 619 PRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDL-GITTSRVGRRGS 677
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
+L IE V A + C A N G L VY
Sbjct: 678 VLTIEAVE-ASHAGNFTCHARNLAG-HQQFTTPLNVYV 713
Score = 61.9 bits (150), Expect = 1e-12
Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 11/108 (10%)
Query: 4 KVRFLDPPEITLRPRNQAVKAGGITSFYCIA---RGDPIPVIQWRKNGKRV----SGTQS 56
VR + + V G C+ D + V+ W + + +
Sbjct: 132 HVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDG 191
Query: 57 RYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
+Y+V P G L I V Y+C ++ + A+
Sbjct: 192 KYLVL---PSGEL-HIREVGPEDGYKSYQCRTKHRLTGETRLSATKGR 235
Score = 27.2 bits (60), Expect = 1.4
Identities = 6/39 (15%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 70 LRIEPVRHARDDAVYECVAENGVG-DAVSAEASLTVYEG 107
+ + R + ++ VA G ++A +G
Sbjct: 1 MNMPNER-LKWLMLFAAVALIACGSQTLAANPPDADQKG 38
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 77.4 bits (190), Expect = 4e-20
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 9/102 (8%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVI--QWRKNGKRVSGTQSRYMVQEFPPGG- 67
P+IT++P Q+ G SF C A + W + + + + GG
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 68 -----SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
++LR+ V + Y+CV N G + S A LT+
Sbjct: 71 LMEYTTILRLRNVEFT-SEGXYQCVISNHFGSSYSVXAXLTI 111
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 76.6 bits (189), Expect = 7e-20
Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 4/99 (4%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P ITLR R+ V G T F + P ++W NG + + + G
Sbjct: 8 APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTS--GVLT 65
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGE 108
L I D Y V N G+A S A+L V G+
Sbjct: 66 LEILDCH-TDDSGTYRAVCTNYKGEA-SDYATLDVTGGD 102
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 77.4 bits (190), Expect = 1e-19
Identities = 23/106 (21%), Positives = 32/106 (30%), Gaps = 13/106 (12%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQS-----------RY 58
P +Q GG +C A G P+P IQW G+ + S
Sbjct: 21 MAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHI 80
Query: 59 MVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
S + I+ + D YEC A N + V
Sbjct: 81 HATYHQHAASTISIDTLV-EEDTGTYECRASNDPD-RNHLTRAPRV 124
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 79.6 bits (196), Expect = 2e-19
Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 3/104 (2%)
Query: 4 KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGK-RVSGTQSRYMVQE 62
+PP+I L P G C A + K G ++ +
Sbjct: 180 NRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDN 239
Query: 63 FPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
+ L + V +D +Y CVA N VG +A + V E
Sbjct: 240 YYKKVRALSLNAVD-FQDAGIYSCVASNDVGTR-TATMNFQVVE 281
Score = 66.5 bits (162), Expect = 1e-14
Identities = 17/109 (15%), Positives = 28/109 (25%), Gaps = 7/109 (6%)
Query: 5 VRFLDPPEI-TLRPRNQAVKAGGITSFYCIARG-DPIPVIQWRKNGKRVSGTQSRYMVQE 62
+ DP L + V G C+ + + G R ++ Y
Sbjct: 83 LYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFF-- 140
Query: 63 FPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
I + D Y C ++ S L V +P
Sbjct: 141 --SPWRGFIIRKAK-VLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEP 186
Score = 55.7 bits (134), Expect = 9e-11
Identities = 15/97 (15%), Positives = 24/97 (24%), Gaps = 13/97 (13%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P I V+ G + C++ G ++W GS
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVSNGS----VEWDGPISPYWTLDPE-------SPGST 52
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L ++ Y C S L V +
Sbjct: 53 LTTRNAT-FKNTGTYRCTELEDPMAG-STTIHLYVKD 87
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 75.7 bits (186), Expect = 3e-19
Identities = 27/100 (27%), Positives = 34/100 (34%), Gaps = 7/100 (7%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIP-VIQWRKNGKRV-SGTQSRYMVQEFPPGG 67
PP I+ + Q G C R P P I W + SGT RY V+
Sbjct: 14 PPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE 72
Query: 68 ---SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
S L I + A +Y C A N G + L
Sbjct: 73 GVISTLTISNIVRADFQTIYNCTAWNSFGSD-TEIIRLKE 111
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 74.3 bits (183), Expect = 4e-19
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 6/96 (6%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P+I R +KAG + G P P W + +V + +
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALA-PELLV-DAKSSTTS 59
Query: 70 LRIEPVRHARDDA-VYECVAENGVGDAVSAEASLTV 104
+ + R D+ Y+ +N +G+ A + V
Sbjct: 60 IFFPSAK--RADSGNYKLKVKNELGED-EAIFEVIV 92
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 78.5 bits (193), Expect = 7e-19
Identities = 30/110 (27%), Positives = 41/110 (37%), Gaps = 5/110 (4%)
Query: 2 YRKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQ 61
+ P + + AV A F C A G+P P I W KNG+ G ++
Sbjct: 117 TGAPYWTRPER--MDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIK 174
Query: 62 EFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
S L +E V D Y CV EN G ++ +L V E
Sbjct: 175 LRHQQWS-LVMESVV-PSDRGNYTCVVENKFG-SIRQTYTLDVLERSPHR 221
Score = 76.6 bits (188), Expect = 4e-18
Identities = 31/112 (27%), Positives = 41/112 (36%), Gaps = 13/112 (11%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRK----NGKRVSGTQSRYMVQEFPP 65
P P NQ G F+C D P IQW K NG +V + Y+
Sbjct: 222 PILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTA 281
Query: 66 GG-------SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEK 110
G +L + V D Y C+A N +G + A L V EE+
Sbjct: 282 GANTTDKELEVLSLHNVTFE-DAGEYTCLAGNSIGFS-HHSAWLVVLPAEEE 331
Score = 66.9 bits (163), Expect = 1e-14
Identities = 17/96 (17%), Positives = 26/96 (27%), Gaps = 8/96 (8%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
P + +G C G P+ W K+G + R +V G
Sbjct: 8 PGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLV-PSERVLV-----GPQ 61
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
L++ H D Y C +T
Sbjct: 62 RLQVLNASHE-DSGAYSCRQRLTQRVLCHFSVRVTD 96
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 77.7 bits (191), Expect = 1e-18
Identities = 21/98 (21%), Positives = 30/98 (30%), Gaps = 3/98 (3%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVI-QWRKNGKRVSGTQSRYMVQEFPPGGS 68
PP +TL P G C A + + N +++ Q
Sbjct: 186 PPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVL 245
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L ++ V + Y CVA N G S V E
Sbjct: 246 TLNLDQVD-FQHAGNYSCVASNVQG-KHSTSMFFRVVE 281
Score = 62.3 bits (151), Expect = 5e-13
Identities = 17/109 (15%), Positives = 27/109 (24%), Gaps = 7/109 (6%)
Query: 5 VRFLDPPEITLR-PRNQAVKAGGITSFYCIARG-DPIPVIQWRKNGKRVSGTQSRYMVQE 62
+ DP + V C+ + + R + Y
Sbjct: 83 LYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSF-- 140
Query: 63 FPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
P G I + Y+C A G +S L V + P
Sbjct: 141 SPWHG--FTIHRAK-FIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGP 186
Score = 50.0 bits (119), Expect = 1e-08
Identities = 17/97 (17%), Positives = 25/97 (25%), Gaps = 13/97 (13%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P I VK G + C+ G ++W S S+
Sbjct: 4 IPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSPHWTLYSD-------GSSSI 52
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L ++ Y C SA L V +
Sbjct: 53 LSTNNAT-FQNTGTYRCTEPGDPLGG-SAAIHLYVKD 87
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 76.2 bits (187), Expect = 1e-18
Identities = 27/111 (24%), Positives = 37/111 (33%), Gaps = 9/111 (8%)
Query: 4 KVRFLDPPEITLRPRNQAVKAGGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQSRYMVQE 62
+ L PP +V G C G P W K+G + ++
Sbjct: 98 HLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAF 157
Query: 63 ------FPPGGSLLRIEPVRHARDDAVYECVAENGVGDAV-SAEASLTVYE 106
P L +PV A D Y C A+NG G A+ S A + E
Sbjct: 158 MNSSFTIDPKSGDLIFDPVT-AFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207
Score = 65.8 bits (160), Expect = 1e-14
Identities = 15/103 (14%), Positives = 25/103 (24%), Gaps = 8/103 (7%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG---- 66
+ + V C G P ++W+ + P
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 67 --GSLLRIEPVRHARDDAVYECVAENGVGDAVS-AEASLTVYE 106
S + V +D+ Y C+ G LTV
Sbjct: 62 FSSSGITFSSVT-RKDNGEYTCMVSEEGGQNYGEVSIHLTVLV 103
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 75.8 bits (186), Expect = 2e-18
Identities = 22/107 (20%), Positives = 31/107 (28%), Gaps = 8/107 (7%)
Query: 4 KVRFLDPPEITLRPRNQAVKAGGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQSRYMVQE 62
K+ L PP + G C G P W K+G +
Sbjct: 101 KLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFS 160
Query: 63 -----FPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
P L +P+ A D Y C A NG G ++ +
Sbjct: 161 NSSYVLNPTTGELVFDPLS-ASDTGEYSCEARNGYGTP-MTSNAVRM 205
Score = 65.8 bits (160), Expect = 9e-15
Identities = 11/104 (10%), Positives = 25/104 (24%), Gaps = 8/104 (7%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG--- 66
+ + C G P ++W+ + +
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 67 ---GSLLRIEPVRHARDDAVYECVAENGVGDAV-SAEASLTVYE 106
+ + + V D Y C+ G++ + L V
Sbjct: 64 TFLPTGITFKSVTRE-DTGTYTCMVSEEGGNSYGEVKVKLIVLV 106
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 73.1 bits (179), Expect = 9e-18
Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 8/106 (7%)
Query: 5 VRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRV-----SGTQSRY 58
++ PP + ++ + G C + P W K +G++SR+
Sbjct: 78 IQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRF 137
Query: 59 MVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
V G S L IE + D Y C + G A +L V
Sbjct: 138 FVSS-SQGRSELHIENLNMEADPGQYRCNGTSSKGSD-QAIITLRV 181
Score = 48.5 bits (115), Expect = 3e-08
Identities = 12/90 (13%), Positives = 18/90 (20%), Gaps = 16/90 (17%)
Query: 19 NQAVKAGGITSFYCIARGDPIPVIQ--WRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVR 76
G C V W K G + E G +
Sbjct: 7 TTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLK---------EDALPGQKTEFKVDS 57
Query: 77 HARDDAVYECVAENGVGDAVSAEASLTVYE 106
Y CV A++ ++
Sbjct: 58 DD-QWGEYSCVFLP----EPMGTANIQLHG 82
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 70.9 bits (174), Expect = 1e-17
Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 9/98 (9%)
Query: 9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
+ + V G + C R D I W ++G +++ +R + G
Sbjct: 2 SSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLA-ESNRTRI-----TGE 54
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
+ ++ A D +Y CV + G + S+ V +
Sbjct: 55 EVEVQDSVPA-DSGLYACVTSSPSGSD-TTYFSVNVSD 90
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 73.2 bits (179), Expect = 1e-17
Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 8/104 (7%)
Query: 5 VRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP 64
+ L+ N VK + C++ D IQW N + + T R
Sbjct: 105 HVHQPVTQPFLQVTNTTVKELDSVTLTCLS-NDIGANIQWLFNSQSLQLT-ERM---TLS 159
Query: 65 PGGSLLRIEPVRHARDDA-VYECVAENGVGDAVSAEASLTVYEG 107
S+LRI+P++ R+DA Y+C N V S L +
Sbjct: 160 QNNSILRIDPIK--REDAGEYQCEISNPVSVRRSNSIKLDIIFD 201
Score = 40.0 bits (93), Expect = 3e-05
Identities = 17/115 (14%), Positives = 30/115 (26%), Gaps = 17/115 (14%)
Query: 12 EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKR---------VSGTQSRYMVQE 62
E+T+ V + W K V + + Q
Sbjct: 1 EVTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQA 60
Query: 63 F------PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
+ GSLL + + +D VY + A V++ +P
Sbjct: 61 YSGREIIYSNGSLL-FQMIT-MKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQP 113
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 75.0 bits (184), Expect = 3e-17
Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 8/103 (7%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P ++ V+ +F C + W NG+ + + + G
Sbjct: 467 PKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYL-WWVNGQSLPVSPRLQLS----NGNRT 521
Query: 70 LRIEPVRHARDDA-VYECVAENGVGDAVSAEASLTVYEGEEKP 111
L + V R+DA Y C +N V S +L V G + P
Sbjct: 522 LTLFNVT--RNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTP 562
Score = 73.5 bits (180), Expect = 8e-17
Identities = 22/102 (21%), Positives = 32/102 (31%), Gaps = 15/102 (14%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P + T+ P + G S C A +P W +G TQ
Sbjct: 381 PDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQE------------- 427
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
L I + ++ +Y C A N S T+ E P
Sbjct: 428 LFISNI-TEKNSGLYTCQANNSAS-GHSRTTVKTITVSAELP 467
Score = 73.1 bits (179), Expect = 1e-16
Identities = 18/108 (16%), Positives = 28/108 (25%), Gaps = 6/108 (5%)
Query: 4 KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF 63
V P + V+ + C + W N + +
Sbjct: 283 TVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQ-----L 337
Query: 64 PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
L + V D YEC +N + S L V G + P
Sbjct: 338 SNDNRTLTLLSVT-RNDVGPYECGIQNELSVDHSDPVILNVLYGPDDP 384
Score = 72.7 bits (178), Expect = 2e-16
Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 8/103 (7%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P ++ V+ +F C W N + + + + G
Sbjct: 111 PKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLS----NGNRT 165
Query: 70 LRIEPVRHARDDA-VYECVAENGVGDAVSAEASLTVYEGEEKP 111
L + V R+D Y+C +N V S L V G + P
Sbjct: 166 LTLFNVT--RNDTASYKCETQNPVSARRSDSVILNVLYGPDAP 206
Score = 70.4 bits (172), Expect = 1e-15
Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 15/95 (15%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P + P + + +G + C + +P P WR NG TQ
Sbjct: 559 PDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQV------------- 605
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
L I + ++ Y C N + ++
Sbjct: 606 LFIAKIT-PNNNGTYACFVSNLATGR-NNSIVKSI 638
Score = 63.8 bits (155), Expect = 2e-13
Identities = 24/103 (23%), Positives = 35/103 (33%), Gaps = 15/103 (14%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P T+ P N + ++G + C A +P W NG TQ
Sbjct: 203 PDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQE------------- 249
Query: 70 LRIEPVRHARDDAVYECVAENGVG-DAVSAEASLTVYEGEEKP 111
L I + + Y C A N + ++TVY KP
Sbjct: 250 LFIPNIT-VNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKP 291
Score = 48.4 bits (115), Expect = 5e-08
Identities = 19/118 (16%), Positives = 28/118 (23%), Gaps = 23/118 (19%)
Query: 12 EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQ---------------- 55
++T+ V G + W K + Q
Sbjct: 1 KLTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPA 60
Query: 56 --SRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
R ++ P SLL I+ + D Y A VY KP
Sbjct: 61 YSGREIIY---PNASLL-IQNIIQ-NDTGFYTLHVIKSDLVNEEATGQFRVYPELPKP 113
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 69.0 bits (169), Expect = 9e-17
Identities = 16/97 (16%), Positives = 29/97 (29%), Gaps = 7/97 (7%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
I + V+ G +F C + W + + + P G +
Sbjct: 13 RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLH-ANELNEIDAQPGGYHV 71
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L + + +D A + A A+L V E
Sbjct: 72 LTLRQLA-LKDSGTIYFEAGD-----QRASAALRVTE 102
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 71.3 bits (174), Expect = 1e-16
Identities = 15/104 (14%), Positives = 29/104 (27%), Gaps = 7/104 (6%)
Query: 4 KVRFLDPPEITLRPRNQAVKAGGITSFYCIAR-GDPIPVIQWRKNGKRVSGTQSRYMVQE 62
+ L P T + + + G C + G +W+K +
Sbjct: 115 LLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMT 174
Query: 63 FPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
++ ++ + Y C +N VG L V
Sbjct: 175 ----SPVISVKNAS-SEYSGTYSCTVQNRVGSD-QCMLRLDVVP 212
Score = 41.2 bits (96), Expect = 1e-05
Identities = 15/121 (12%), Positives = 31/121 (25%), Gaps = 28/121 (23%)
Query: 12 EITLRPRNQAVKAGGITSFYCIARGDPIP----VIQWRKNGKRVSGTQSRYMVQ------ 61
IT + G C P I+W + ++
Sbjct: 2 SITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIY 61
Query: 62 ----------------EFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
+ G + + + ++ + D Y+C + G + + LTV
Sbjct: 62 DNYYPDLKGRVHFTSNDVKSGDASINVTNLQLS-DIGTYQCKVKKAPG-VANKKFLLTVL 119
Query: 106 E 106
Sbjct: 120 V 120
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 70.8 bits (173), Expect = 1e-16
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 1/87 (1%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQW-RKNGKRVSGTQSRYMVQEFPPGGS 68
P +++ + + C P P +QW G + T + V + G
Sbjct: 104 PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSL 163
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDA 95
+ ++ CV +N +A
Sbjct: 164 SVAVDLSLPKPWHLPVTCVGKNDKEEA 190
Score = 39.6 bits (92), Expect = 4e-05
Identities = 17/109 (15%), Positives = 31/109 (28%), Gaps = 24/109 (22%)
Query: 2 YRKVRFLDPPEIT---LRPRNQAVKAGGITSFYCIARGDPIP-VIQWRKNGKRVSGTQSR 57
+R+V E++ L P + V G + I P ++
Sbjct: 15 WRRVSLGPEIEVSWFKLGPGEEQVLIGRMH-HDVIFIEWPFRGFFDIHRSANTFF----- 68
Query: 58 YMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L + D Y C + G V+ + L+V +
Sbjct: 69 ------------LVVTAAN-ISHDGNYLCRMKLGET-EVTKQEHLSVVK 103
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 72.0 bits (176), Expect = 1e-16
Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 5/101 (4%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGK---RVSGTQSRYMVQEFPPG 66
+++ V+ G + CI G+ + +W K R+ + +++
Sbjct: 181 SINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHI 240
Query: 67 GSLLRIEPVRHARDDAVYECVAENGVGDA-VSAEASLTVYE 106
S+L I D Y C V D ++TV E
Sbjct: 241 RSILHIPSAELE-DSGTYTCNVTESVNDHQDEKAINITVVE 280
Score = 48.5 bits (115), Expect = 3e-08
Identities = 11/94 (11%), Positives = 24/94 (25%), Gaps = 8/94 (8%)
Query: 12 EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR 71
+T + C + W + + ++ F S+L
Sbjct: 2 VVTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQEMAKAQDGTF---SSVLT 54
Query: 72 IEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
+ + D Y C + G L ++
Sbjct: 55 LTNL-TGLDTGEYFCTHNDSRGLETDERKRLYIF 87
Score = 35.1 bits (80), Expect = 0.002
Identities = 14/106 (13%), Positives = 25/106 (23%), Gaps = 17/106 (16%)
Query: 5 VRFLDPPEITLR----PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMV 60
+ DP L + + C DP V+ + V+
Sbjct: 86 IFVPDPTVGFLPNDAEELFIFLTEITEITIPCRV-TDPQLVVTLHEKKGDVALPVPYDHQ 144
Query: 61 QEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
+ F +D Y C G + S + +
Sbjct: 145 RGF------------SGIFEDRSYICKTTIGDREVDSDAYYVYRLQ 178
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 72.8 bits (178), Expect = 2e-16
Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 6/107 (5%)
Query: 4 KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGT---QSRYM 59
+ F P +++ + ++ G + C + V W++ + S +
Sbjct: 205 RPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHH 264
Query: 60 VQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
+ L I R D V+ C A N G A + +L V +
Sbjct: 265 GDFNYERQATLTISSAR-VNDSGVFMCYANNTFGSA-NVTTTLEVVD 309
Score = 64.3 bits (156), Expect = 1e-13
Identities = 16/107 (14%), Positives = 32/107 (29%), Gaps = 4/107 (3%)
Query: 5 VRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP 64
V DP ++ L R+ K T C + + + R++
Sbjct: 109 VFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPD--- 165
Query: 65 PGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
+ + I+ V+ A C + +S + L V +
Sbjct: 166 -PKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAV 211
Score = 63.9 bits (155), Expect = 2e-13
Identities = 25/107 (23%), Positives = 32/107 (29%), Gaps = 18/107 (16%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRK-------NGKRVSGTQSRYMVQE 62
PEI R C+A G P P I W V + +
Sbjct: 412 KPEILTYDRLVNG------MLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSS 465
Query: 63 FPPGGSL---LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
PP G L I+ + + EC A N VG SA +
Sbjct: 466 GPPFGKLVVQSSIDSSA-FKHNGTVECKAYNDVG-KTSAYFNFAFKG 510
Score = 63.9 bits (155), Expect = 2e-13
Identities = 17/110 (15%), Positives = 31/110 (28%), Gaps = 9/110 (8%)
Query: 4 KVRFLDPPEITLRPR---NQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGTQSRYM 59
+ +D I + P V G P P QW + + Y
Sbjct: 304 TLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYP 363
Query: 60 VQE---FPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
E S L + ++ + Y + N +A + ++ V
Sbjct: 364 KSENESNIRYVSELHLTRLK-GTEGGTYTFLVSNSDVNA-AIAFNVYVNT 411
Score = 48.9 bits (116), Expect = 3e-08
Identities = 16/116 (13%), Positives = 31/116 (26%), Gaps = 26/116 (22%)
Query: 5 VRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP 64
PP I + V+ G C G ++W +
Sbjct: 31 PGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPGF----VKWTFEILDETNE---------- 76
Query: 65 PGGSLLRIEPVRHARDDAVYECVAENGVGDAVS-----------AEASLTVYEGEE 109
+ E A + Y C ++G+ +++ + SL E +
Sbjct: 77 NKQNEWITEKAE-ATNTGKYTCTNKHGLSNSIYVFVRDPAKLFLVDRSLYGKEDND 131
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 67.1 bits (164), Expect = 3e-16
Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 11/97 (11%)
Query: 10 PPEITLR-PRNQAVKAGGITSFYCIAR-GDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
P +T+ R+Q+V+ G +F C A+ P + W + +++ G
Sbjct: 9 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMD------FNG 62
Query: 68 SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
L I V+ D Y C N A+L V
Sbjct: 63 IL-TIRNVQ-PSDAGTYVCTGSNMFA-MDQGTATLHV 96
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 71.3 bits (174), Expect = 4e-16
Identities = 19/106 (17%), Positives = 28/106 (26%), Gaps = 5/106 (4%)
Query: 1 MYRKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMV 60
+ P + ++ N +V G C G + W S T +
Sbjct: 149 AHMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGG 208
Query: 61 QEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
P L + C AEN VG A + V
Sbjct: 209 L---PSLGLTLANVTSDL-NRKNVTCWAENDVGRA-EVSVQVNVSF 249
Score = 62.4 bits (151), Expect = 6e-13
Identities = 17/101 (16%), Positives = 28/101 (27%), Gaps = 7/101 (6%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL- 69
+ G P P ++W NG ++ T + P
Sbjct: 247 VSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 306
Query: 70 ----LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
LR+ H ++ Y +A N G SA +
Sbjct: 307 RHGCLRLNQPTHV-NNGNYTLLAANPFG-QASASIMAAFMD 345
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 66.4 bits (162), Expect = 6e-16
Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 9/101 (8%)
Query: 4 KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF 63
P + + + V G + C R D I W ++G ++ +R +
Sbjct: 3 LPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLV-ESNRTRI--- 57
Query: 64 PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
G + + A D +Y CV + G + S+ V
Sbjct: 58 --TGEEVEVRDSIPA-DSGLYACVTSSPSGSD-TTYFSVNV 94
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 70.5 bits (172), Expect = 8e-16
Identities = 14/105 (13%), Positives = 25/105 (23%), Gaps = 10/105 (9%)
Query: 4 KVRFLDPPEITLRPRNQ--AVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQ 61
V ++ I ++ + F + P W + K Q
Sbjct: 318 LVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQK----- 372
Query: 62 EFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
G + H Y AEN + +L +
Sbjct: 373 -GLDNGYSISKFCN-HKHQPGEYIFHAENDDA-QFTKMFTLNIRS 414
Score = 68.5 bits (167), Expect = 4e-15
Identities = 5/97 (5%), Positives = 20/97 (20%), Gaps = 5/97 (5%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
V + + W ++ + G
Sbjct: 48 SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNR---GVVS 104
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
+ I + Y ++ + + ++++
Sbjct: 105 MVILKMTE-TQAGEYLLFIQSEATNY-TILFTVSIRN 139
Score = 63.2 bits (153), Expect = 3e-13
Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%)
Query: 4 KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRV-SGTQSRYMVQE 62
V + TLR K + CI+ P P+++W + S +
Sbjct: 134 TVSIRNTLLYTLRRPYF-RKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESP---- 188
Query: 63 FPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
+ + E V H C A N +G + ++ + +
Sbjct: 189 ----AVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQ 228
Score = 62.4 bits (151), Expect = 6e-13
Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 14/104 (13%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG-- 66
+K G C A + + W K + + + + +
Sbjct: 227 NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEG-NYFEMSTYSTNRT 285
Query: 67 ---GSLLRIEPVRHARDDA-VYECVAENGVGDAVSAEASLTVYE 106
+ V R+D Y C + + A +T+ E
Sbjct: 286 MIRILFAFVSSVA--RNDTGYYTCSSSKHPSQS----ALVTIVE 323
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 65.9 bits (161), Expect = 9e-16
Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 11/105 (10%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGT---QSRYMVQEFPPG 66
P IT ++ + +G+P P +QW NG ++ + ++ V
Sbjct: 4 APTIT---FLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60
Query: 67 GSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
L+++ H ++ Y +A+N G + S P
Sbjct: 61 HGCLQLDNPTHM-NNGDYTLIAKNEYGKD-EKQISAHF---MGWP 100
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 69.3 bits (169), Expect = 3e-15
Identities = 14/105 (13%), Positives = 24/105 (22%), Gaps = 10/105 (9%)
Query: 4 KVRFLDPPEITL--RPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQ 61
V ++ I + + F + P W + K Q
Sbjct: 318 LVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL--- 374
Query: 62 EFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
G + H Y AEN + +L +
Sbjct: 375 ---DNGYSISKFCN-HKHQPGEYIFHAENDDAQF-TKMFTLNIRR 414
Score = 65.5 bits (159), Expect = 5e-14
Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 8/98 (8%)
Query: 9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
+ TLR K + CI+ P P+++W + +
Sbjct: 139 NTLLYTLRRPYF-RKMENQDALVCISESVPEPIVEWVLCDSQGESCKE-------ESPAV 190
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
+ + E V H C A N +G + ++ + +
Sbjct: 191 VKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQ 228
Score = 65.5 bits (159), Expect = 5e-14
Identities = 5/97 (5%), Positives = 20/97 (20%), Gaps = 5/97 (5%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
V + + W ++ + G
Sbjct: 48 SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNR---GVVS 104
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
+ I + Y ++ + + ++++
Sbjct: 105 MVILKMTET-QAGEYLLFIQSEATNY-TILFTVSIRN 139
Score = 56.6 bits (136), Expect = 6e-11
Identities = 18/107 (16%), Positives = 28/107 (26%), Gaps = 12/107 (11%)
Query: 5 VRFLDPPEITLRPRNQAVKAGGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQ----SRYM 59
+ P+ TL +K G C A + + W K + S Y
Sbjct: 224 IDLNQTPQTTLPQL--FLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYS 281
Query: 60 VQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
+ V D Y C + A +T+ E
Sbjct: 282 TNRTMIRILFAFVSSVA-RNDTGYYTCSSSKHPS----QSALVTIVE 323
Score = 56.2 bits (135), Expect = 9e-11
Identities = 15/106 (14%), Positives = 30/106 (28%), Gaps = 17/106 (16%)
Query: 9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKR--------VSGTQSRYMV 60
P++ + + C + G P+P W+K + G +R
Sbjct: 414 RKPQV--------LAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKAN 465
Query: 61 QEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
++ + A + +C A N +G L
Sbjct: 466 RKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLG-TSCETILLNSPG 510
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 64.7 bits (158), Expect = 4e-15
Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 10/101 (9%)
Query: 10 PPEITLRPRNQ---AVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG 66
PP+I L + K G + +G P P + W K G + SR V
Sbjct: 21 PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDT--SRVHV-RTSDF 77
Query: 67 GSLLRIEPVRHARDDA-VYECVAENGVGDAVSAEASLTVYE 106
++ + R D+ YE + +A + V E
Sbjct: 78 DTVFFVRQAA--RSDSGEYELSVQIENMKD-TATIRIRVVE 115
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 67.1 bits (163), Expect = 8e-15
Identities = 18/107 (16%), Positives = 32/107 (29%), Gaps = 4/107 (3%)
Query: 5 VRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP 64
V DP ++ L K C + + + T ++ P
Sbjct: 86 VFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVP--NP 143
Query: 65 PGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
G + I+ V+ A C A+ S + +L V E +
Sbjct: 144 KAG--ITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAI 188
Score = 65.9 bits (160), Expect = 2e-14
Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 8/103 (7%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVS-----GTQSRYMVQEF 63
P +++ + +K G + C + V W K + S +
Sbjct: 188 IPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFN 247
Query: 64 PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L I R D V+ C A N G + + +L V E
Sbjct: 248 YERQETLTISSAR-VDDSGVFMCYANNTFG-SANVTTTLKVVE 288
Score = 38.9 bits (90), Expect = 8e-05
Identities = 16/90 (17%), Positives = 26/90 (28%), Gaps = 14/90 (15%)
Query: 8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
PP I V+AG S CI ++W +++
Sbjct: 10 PSPPSIHPAQSELIVEAGDTLSLTCIDPDF----VRWTFKTYFNEMVENK---------K 56
Query: 68 SLLRIEPVRHARDDAVYECVAENGVGDAVS 97
+ E A Y C NG+ ++
Sbjct: 57 NEWIQEKA-EATRTGTYTCSNSNGLTSSIY 85
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 67.4 bits (165), Expect = 9e-15
Identities = 28/97 (28%), Positives = 37/97 (38%), Gaps = 8/97 (8%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRK-NGKRVS-GTQSRYMVQEFPPGG 67
+ + V G F C A GDP P I W VS + R V P G
Sbjct: 385 ARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVF---PDG 441
Query: 68 SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
+ L + + D+ Y C+A N G+ S A L V
Sbjct: 442 T-LEVRYAQVQ-DNGTYLCIAANAGGND-SMPAHLHV 475
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 63.7 bits (155), Expect = 1e-14
Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 7/99 (7%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMV--QEFPPGG 67
PP + + + RG+P P + W NG+ + ++ ++ QE
Sbjct: 8 PPRVVSLEEPELRL---EHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISE 64
Query: 68 SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L H ++ Y +A+N +G A + + +
Sbjct: 65 GCLLFNKPTH-YNNGNYTLIAKNPLGTA-NQTINGHFLK 101
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 67.0 bits (163), Expect = 1e-14
Identities = 18/106 (16%), Positives = 27/106 (25%), Gaps = 15/106 (14%)
Query: 10 PPEITLRPRNQAVKAG-------GITSFYCIARGDPIPVIQWRKNGKR--VSGTQSRYMV 60
+ + G ++ A P + W KN V G + M
Sbjct: 18 CRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMW 77
Query: 61 QEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
+ L + P D Y C N L V+E
Sbjct: 78 AQ----DGALWLLPALQ-EDSGTYVCTTRNASY-CDKMSIELRVFE 117
Score = 64.3 bits (156), Expect = 1e-13
Identities = 17/115 (14%), Positives = 33/115 (28%), Gaps = 12/115 (10%)
Query: 4 KVRFLDPPEITLRPRNQAVKAGGITSFYC-----IARGDPIPVIQWRKNGKRVSGTQSRY 58
+V + Q + C R IQW K+ + ++
Sbjct: 114 RVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKF 173
Query: 59 MVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDA---VSAEASLTVYEGEEK 110
+ G + L + V D Y CV ++ L + + +E+
Sbjct: 174 LSVR---GTTHLLVHDVALE-DAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEE 224
Score = 58.2 bits (140), Expect = 2e-11
Identities = 19/111 (17%), Positives = 30/111 (27%), Gaps = 21/111 (18%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIAR---GDPIPVIQWRKNGKRV-----------SGTQ 55
P I + + G + C G P+ + W G +
Sbjct: 226 IPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPR 285
Query: 56 SRYMVQEFPPGGSLLRIEPVRHARDDA--VYECVAENGVGDAVSAEASLTV 104
Y L +PV R+D ++CV N + TV
Sbjct: 286 QEYSENNENYIEVPLIFDPVT--REDLHMDFKCVVHNTLS---FQTLRTTV 331
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 62.7 bits (153), Expect = 2e-14
Identities = 26/102 (25%), Positives = 33/102 (32%), Gaps = 9/102 (8%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P I +Q V G C PV W K+ K + +Q +V E ++
Sbjct: 8 PAAIIKPLEDQWVAPGEDVELRCELSRAGTPV-HWLKDRKAIRKSQKYDVVCE--GTMAM 64
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
L I D Y C E ASL V E P
Sbjct: 65 LVIRGASLK-DAGEYTCEVEASKS-----TASLHVEEKASGP 100
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 66.3 bits (161), Expect = 2e-14
Identities = 19/107 (17%), Positives = 31/107 (28%), Gaps = 14/107 (13%)
Query: 10 PPEITLRPRNQ--AVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP--- 64
P I + P N+ V G C G + W+ NG + +
Sbjct: 208 RPVI-VSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVEN 266
Query: 65 -------PGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
++L I + + C A+N G +A L
Sbjct: 267 PANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGID-AAYIQLIY 312
Score = 58.2 bits (140), Expect = 2e-11
Identities = 20/105 (19%), Positives = 30/105 (28%), Gaps = 15/105 (14%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKR--VSGTQSRYMVQEFPPG 66
I + N+ C + I W K+ + VS Q+ + Q
Sbjct: 11 EKIILVSSANEID------VRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH---- 60
Query: 67 GSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
L P + D Y CV N + + S E E
Sbjct: 61 KEKLWFVPAKV-EDSGHYYCVVRNSSYC-LRIKISAKFVENEPNL 103
Score = 53.2 bits (127), Expect = 1e-09
Identities = 14/107 (13%), Positives = 26/107 (24%), Gaps = 15/107 (14%)
Query: 9 DPPEITLRPRNQAVKAGGITSFYC------IARGDPIPVIQWRKNGKRVSGTQSRYMVQE 62
+ Q + G C + +P +QW K+ K + +
Sbjct: 102 NLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSG-- 159
Query: 63 FPPGGSLLRIEPVRHARDDAVYECVAENGVGDA---VSAEASLTVYE 106
L + V + Y C A ++ E
Sbjct: 160 ---VKDRLIVMNVA-EKHRGNYTCHASYTYLGKQYPITRVIEFITLE 202
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 63.1 bits (153), Expect = 2e-14
Identities = 17/113 (15%), Positives = 32/113 (28%), Gaps = 12/113 (10%)
Query: 9 DPPEITLRPRNQAVKAGGITSFYCIARGDPI---PVIQWRKNGKRVSGTQSRYMVQEFPP 65
+P+ VK G +F + + + P I+W K +++ +Q
Sbjct: 6 SGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKET 65
Query: 66 GGSL-------LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
++I + Y C S L V+E
Sbjct: 66 FERHSRVYTFEMQIIKAK-DNFAGNYRCEVTYKDKF-DSCSFDLEVHESTGTT 116
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 62.8 bits (152), Expect = 3e-14
Identities = 25/131 (19%), Positives = 41/131 (31%), Gaps = 36/131 (27%)
Query: 9 DPPEITL-----RPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQ-- 61
+PP+I L P V AG GDP P + W+K + + +R
Sbjct: 12 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAP 71
Query: 62 -------------------------EFPPGGSLLRIEPVRHARDDA-VYECVAENGVGDA 95
E S+ +E ++D VY +N VG+
Sbjct: 72 EDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAE--KEDEGVYTVTVKNPVGED 129
Query: 96 VSAEASLTVYE 106
++ V +
Sbjct: 130 -QVNLTVKVID 139
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 65.5 bits (160), Expect = 4e-14
Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 6/99 (6%)
Query: 9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRK-NGKRVSGTQSRYMVQEFPPGG 67
P I P + V G C A + + W NG ++ + + G
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDG- 397
Query: 68 SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L V D +Y C+ N VG+ +A A+L V
Sbjct: 398 -TLNFTNVTVQ-DTGMYTCMVSNSVGNT-TASATLNVTG 433
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 61.6 bits (149), Expect = 6e-14
Identities = 22/109 (20%), Positives = 36/109 (33%), Gaps = 13/109 (11%)
Query: 9 DPPEI-TLRPRNQAVKAGGITSFYCIARGDPI---PVIQWRKNGKR--VSGTQSRYMVQE 62
DP + +RP++ V GG +F G + PV++W K S + +
Sbjct: 2 DPIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHD 61
Query: 63 -----FPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L I + Y C + +LTV+E
Sbjct: 62 SYDRASKVYLFELHITDAQ-PAFTGSYRCEVSTKDKFD-CSNFNLTVHE 108
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 65.2 bits (159), Expect = 6e-14
Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRK-NGKRVSGTQSRYMVQEFPPGG 67
P I PR+ + G + C P+ ++W NG +S + G
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDGT 408
Query: 68 SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
L V + D VY C+ N G++ +A A L V
Sbjct: 409 --LNFSHVLLS-DTGVYTCMVTNVAGNS-NASAYLNV 441
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 64.7 bits (157), Expect = 7e-14
Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 4/101 (3%)
Query: 8 LDPPEITLRPRNQAVKAGGITSFYCIAR-GDPIPVIQWRKNGKRVSGTQSRYMVQE-FPP 65
L P+ T + + + C++ G P I W + + T
Sbjct: 115 LAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVT 174
Query: 66 GGSLLRIEPVRHARDDAVYECVAENGVGDA-VSAEASLTVY 105
SL + P D C E+ + +LTVY
Sbjct: 175 VTSLWILVPSSQV-DGKNVTCKVEHESFEKPQLLTVNLTVY 214
Score = 59.7 bits (144), Expect = 4e-12
Identities = 21/102 (20%), Positives = 31/102 (30%), Gaps = 14/102 (13%)
Query: 5 VRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGTQSRYMVQEF 63
V + I+ N + C AR +P P W +
Sbjct: 213 VYYPPEVSIS-GYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQ----- 266
Query: 64 PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
G+ L I PV + C N +G + +A LTV
Sbjct: 267 ---GAQLLIRPVD-KPINTTLICNVTNALG---ARQAELTVQ 301
Score = 52.0 bits (124), Expect = 2e-09
Identities = 19/110 (17%), Positives = 32/110 (29%), Gaps = 22/110 (20%)
Query: 17 PRNQAVKAGGITSFYCIARGDPIPV-----IQWRKNGKRVS------------GTQSRYM 59
P G + C + + V + W ++G+ S R
Sbjct: 7 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLE 66
Query: 60 VQEFPPGGSL----LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
G L LR+ +R D+ Y C+ + S + L V
Sbjct: 67 FVAARLGAELRNASLRMFGLRVE-DEGNYTCLFVTFPQGSRSVDIWLRVL 115
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 60.8 bits (148), Expect = 1e-13
Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 8/98 (8%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
+I +Q V G C + +W KNG V + +VQ+
Sbjct: 7 GLKILTPLTDQTVNLGKEICLKCEISENIPG--KWTKNGLPVQESDRLKVVQKG--RIHK 62
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEG 107
L I D+ Y + V+ A + V G
Sbjct: 63 LVIANALTE-DEGDYVFAPDAY---NVTLPAKVHVISG 96
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 60.4 bits (147), Expect = 1e-13
Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
Query: 13 ITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGTQSRYMVQEFPPGGSLLR 71
++ + + + GG + C + W +++ + +Y + + G ++L
Sbjct: 4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENS-EKYEI-TYEDGVAILY 61
Query: 72 IEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
++ + DD Y C N G+ S+ A L V
Sbjct: 62 VKDIT-KLDDGTYRCKVVNDYGED-SSYAELFV 92
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 64.0 bits (155), Expect = 1e-13
Identities = 16/100 (16%), Positives = 26/100 (26%), Gaps = 11/100 (11%)
Query: 10 PPEITLRP-RNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGTQSRYMVQEFPPGG 67
PE+T+ C A +P W +
Sbjct: 231 EPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVE-------AQNR 283
Query: 68 SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEG 107
+L P+ Y C A N +G S + + + E
Sbjct: 284 TLFFKGPIN-YSLAGTYICEATNPIGTR-SGQVEVNITEA 321
Score = 52.8 bits (126), Expect = 1e-09
Identities = 17/108 (15%), Positives = 30/108 (27%), Gaps = 8/108 (7%)
Query: 4 KVRFLDPPEITLRP-----RNQAVKAGGITSFYCIAR-GDPIPVIQWRKNGKRVSGTQSR 57
+ + P + R + + + C + G P V+ W K + Q
Sbjct: 124 NLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEI 183
Query: 58 YMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
S R+ P R A C+ + +L V
Sbjct: 184 RNPNGTVTVISRYRLVPSREA-HQQSLACIVNYHMDR-FKESLTLNVQ 229
Score = 49.4 bits (117), Expect = 2e-08
Identities = 16/118 (13%), Positives = 33/118 (27%), Gaps = 21/118 (17%)
Query: 9 DPPEITLRPRNQAVKAGGITSFYCIARG----DPIPVIQWRKNG---------------- 48
DP ++ + G +C I + W+K+
Sbjct: 13 DPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGV 72
Query: 49 KRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
++ + R +R+ + D+ VY C ++ +LTV
Sbjct: 73 SVLAPYRERVEFLRPSFTDGTIRLSRLE-LEDEGVYICEFATFPTGNRESQLNLTVMA 129
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 63.5 bits (154), Expect = 2e-13
Identities = 15/96 (15%), Positives = 28/96 (29%), Gaps = 8/96 (8%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGD-PIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
P + V C I W K+ + +S ++ ++ G
Sbjct: 222 GPHFV-EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVD-EKHDFKD---GIC 276
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
L I D +YE + ++ G + L
Sbjct: 277 TLLITEFSKK-DAGIYEVILKDDRGKD-KSRLKLVD 310
Score = 59.2 bits (143), Expect = 6e-12
Identities = 12/103 (11%), Positives = 31/103 (30%), Gaps = 5/103 (4%)
Query: 10 PPEITLRPRNQAVKAGGITSFYC-IARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
P + G F+ + + + N K + M + G
Sbjct: 107 PTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGII 166
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
+ +E ++ D+ Y ++G + +++ + K
Sbjct: 167 EMFMEKLQ-DEDEGTYTFQLQDGKA---TNHSTVVLVGDVFKK 205
Score = 56.9 bits (137), Expect = 4e-11
Identities = 15/89 (16%), Positives = 25/89 (28%), Gaps = 4/89 (4%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P N +F C P W K+ + R V+ +
Sbjct: 3 DPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDS-PRLEVESKG-NKTK 59
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSA 98
+ + + D +Y C + G A S
Sbjct: 60 MTFKDLG-MDDLGIYSCDVTDTDGIASSY 87
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 60.1 bits (146), Expect = 2e-13
Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 7/97 (7%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
E+ + VKA F C + + +W KNG V ++ +
Sbjct: 8 QLEVLQDIADLTVKAAEQAVFKCEVSDEKVTG-KWYKNGVEVRPSKRITISHV--GRFHK 64
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L I+ VR D+ Y V + A+S A L E
Sbjct: 65 LVIDDVRPE-DEGDYTFVPDGY---ALSLSAKLNFLE 97
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 60.0 bits (146), Expect = 2e-13
Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 8/102 (7%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
+T + + G C + ++W KNG+ + +
Sbjct: 7 GIMVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHI 65
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
L IE A D A Y + G + A L+V + + P
Sbjct: 66 LIIEGATKA-DAAEYSVMTTGG-----QSSAKLSV-DLKSGP 100
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 63.7 bits (154), Expect = 2e-13
Identities = 21/114 (18%), Positives = 29/114 (25%), Gaps = 12/114 (10%)
Query: 4 KVRFLDPPEITLRPRNQAVKAGGITSFYC-IARGDPIPVIQWRKNGKRVSGTQSRYMVQE 62
+ PP YC I I W KN + + ++Y
Sbjct: 122 RSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYS--- 178
Query: 63 FPPGGSLLRIEPVRHARDDAVYECVAENGVGDA-----VSAEASLTVYEGEEKP 111
G L I D Y+C VS LTV ++
Sbjct: 179 --QSGQNLIIHNPELE-DSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHR 229
Score = 61.8 bits (149), Expect = 1e-12
Identities = 15/103 (14%), Positives = 25/103 (24%), Gaps = 8/103 (7%)
Query: 9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIP----VIQWRKNGKRVSGTQSRYMVQEFP 64
D + V G + C A + +I W + G
Sbjct: 227 DHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTS 286
Query: 65 ---PGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
+ L E V Y C N D + ++ +
Sbjct: 287 SGGITEATLYFENVTEEYIGNTYTCRGHNYYFDK-TLTTTVVL 328
Score = 56.0 bits (134), Expect = 9e-11
Identities = 21/114 (18%), Positives = 30/114 (26%), Gaps = 16/114 (14%)
Query: 2 YRKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPI---------PVIQWRKNGKRVS 52
+ ++L+P + N G S C D + V+ W K GK
Sbjct: 21 AKDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRR 80
Query: 53 GTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
R G L I Y C GD V + +
Sbjct: 81 PLNRRV------KNGDLW-IANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRK 127
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 60.1 bits (146), Expect = 2e-13
Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 9/98 (9%)
Query: 10 PPEITLRPRNQAVKAGGITSFYC-IARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
IT R + V G SF C ++ W GK V + SR+
Sbjct: 8 HVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVG-SSSRFQA-TRQGRKY 65
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
+L + + D ++++ASL V E
Sbjct: 66 ILVVREAAPS-DAGEVVFSVRG-----LTSKASLIVRE 97
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 62.3 bits (151), Expect = 2e-13
Identities = 15/96 (15%), Positives = 29/96 (30%), Gaps = 8/96 (8%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGD-PIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
P + V C I W K+ + +S + ++ ++ G
Sbjct: 117 GPHFV-EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE-KHDFKD---GIC 171
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
L I D +YE + ++ G + L
Sbjct: 172 TLLITEFSKK-DAGIYEVILKDDRGKD-KSRLKLVD 205
Score = 61.5 bits (149), Expect = 4e-13
Identities = 12/99 (12%), Positives = 31/99 (31%), Gaps = 5/99 (5%)
Query: 14 TLRPRNQAVKAGGITSFY-CIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRI 72
T + G F+ + + + N K + M + G + +
Sbjct: 6 TKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFM 65
Query: 73 EPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
E ++ D+ Y ++G + +++ + K
Sbjct: 66 EKLQ-DEDEGTYTFQLQDGKA---TNHSTVVLVGDVFKK 100
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 60.3 bits (146), Expect = 2e-13
Identities = 18/102 (17%), Positives = 29/102 (28%), Gaps = 10/102 (9%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYM-----VQEFP 64
P + G P P ++W NG ++ T +
Sbjct: 3 MPASV---QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANET 59
Query: 65 PGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
LR+ H ++ Y +A N G A SA +
Sbjct: 60 VRHGCLRLNQPTH-VNNGNYTLLAANPFGQA-SASIMAAFMD 99
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 59.6 bits (145), Expect = 3e-13
Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 9/102 (8%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P ++ V GG + C+ PV +W + + QE
Sbjct: 8 PVRFQEALKDLEVLEGGAATLRCVLSSVAAPV-KWCYGNNVLRPGDKYSLRQEG--AMLE 64
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
L + +R +D Y C + + A+LTV P
Sbjct: 65 LVVRNLR-PQDSGRYSCSFGD-----QTTSATLTVTALPSGP 100
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 59.3 bits (144), Expect = 4e-13
Identities = 22/101 (21%), Positives = 30/101 (29%), Gaps = 9/101 (8%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P I +Q V G + + W KNG ++ S F G
Sbjct: 8 PVLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKR 66
Query: 70 --LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGE 108
L V D Y+ + G EA L V E +
Sbjct: 67 HILIFSDVVQE-DRGRYQVITNGG-----QCEAELIVEEKQ 101
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 57.7 bits (140), Expect = 1e-12
Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 9/97 (9%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
+ +PR+ V AG F + V +W++ G +S + + E
Sbjct: 8 VSAFSKKPRSVEVAAGSPAVFEAETERAGVKV-RWQRGGSDISASNKYGLATE--GTRHT 64
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L + V A D Y +A + + L V E
Sbjct: 65 LTVREVGPA-DQGSYAVIAGS-----SKVKFDLKVIE 95
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 60.8 bits (147), Expect = 1e-12
Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 21/100 (21%)
Query: 8 LDPPEITLR--PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPP 65
L P + R P N + C A G+P+P ++ K+G V
Sbjct: 181 LYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVT---- 236
Query: 66 GGSLLRIEPVRHARDDA-VYECVAENGVGDAVSAEASLTV 104
RD Y C A + G+ V+ E ++ V
Sbjct: 237 -------------RDLEGTYLCRARSTQGE-VTREVTVNV 262
Score = 43.1 bits (101), Expect = 3e-06
Identities = 17/109 (15%), Positives = 26/109 (23%), Gaps = 18/109 (16%)
Query: 2 YRKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQ 61
+ V P + V G + C A P + NG
Sbjct: 90 LQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAH----PRAKVTLNGVPAQ--------- 136
Query: 62 EFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAV---SAEASLTVYEG 107
P G + + + C A V + + L V G
Sbjct: 137 --PLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYG 183
Score = 37.3 bits (86), Expect = 4e-04
Identities = 10/100 (10%), Positives = 28/100 (28%), Gaps = 11/100 (11%)
Query: 9 DPPEITLRPRNQAVKAGGITSFYCIARGD---PIPVIQWRKNGKRVSGTQSRYMVQEFPP 65
PP++ + ++ + C G + +R++ T + +
Sbjct: 5 TPPQLVS---PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTY--GNDSFS 59
Query: 66 GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
+ + + C G ++T+Y
Sbjct: 60 AKASVSVTAEDE--GTQRLTCAVILGNQS-QETLQTVTIY 96
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 61.0 bits (147), Expect = 2e-12
Identities = 12/103 (11%), Positives = 28/103 (27%), Gaps = 17/103 (16%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGD-PIPV---IQWRKNGKRVSGTQSRYMVQEFPP 65
++++ + AG + GD P+P W K+ + +
Sbjct: 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTAT-------- 53
Query: 66 GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGE 108
L + + Y+ ++ + E E
Sbjct: 54 ----LTVADATSE-NAGSYKVTVQDTDTMTSVESEVFLMEEAE 91
Score = 53.3 bits (127), Expect = 9e-10
Identities = 15/108 (13%), Positives = 29/108 (26%), Gaps = 23/108 (21%)
Query: 5 VRFLDPPEITLRPRNQAVKAGGITSFYC---IARGDPIPVI-----QWRKNGKRVSGTQS 56
+ + P++ V + + + G W K + TQ
Sbjct: 87 MEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQD 146
Query: 57 RYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
+ I+ A + VY D+ +A AS +
Sbjct: 147 -------------ITIQEFT-ADKNGVYTVKVWGESEDS-AASASTKI 179
Score = 29.0 bits (64), Expect = 0.28
Identities = 21/117 (17%), Positives = 43/117 (36%), Gaps = 21/117 (17%)
Query: 9 DPPEITLRPRNQAVKAGGITS-FYCIARGDPIPVIQW----RKNGK---RVSGTQSRYMV 60
T+ N+ ++ + G P I++ ++ G+ + G++ +
Sbjct: 190 VVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEAL 249
Query: 61 QEFP--PGGSLLRIEPVRHARDDAVYECVAENG---------VGDAVSAEASLTVYE 106
+ F P G L E + D A + CVA+ V + S + S+ V +
Sbjct: 250 EGFSITPDGHLF-KESATYD-DTAKFWCVAKLYQQIEDETVEVAASTSRKCSMEVVK 304
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 57.8 bits (140), Expect = 2e-12
Identities = 19/102 (18%), Positives = 30/102 (29%), Gaps = 10/102 (9%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P + T RN+ G C ++W K + + R+ +
Sbjct: 19 PIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDG-DRHSL-RQDGARCE 74
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
L+I + D Y C+ A LTV P
Sbjct: 75 LQIRGLVAE-DAGEYLCMCGK-----ERTSAMLTVRAMPSGP 110
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 59.5 bits (143), Expect = 4e-12
Identities = 16/117 (13%), Positives = 30/117 (25%), Gaps = 23/117 (19%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGK----------RVSGTQSRYM 59
V G + C + W + ++++
Sbjct: 136 NNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFG 195
Query: 60 VQEFPP---------GGSLLRIEPVRHARDDA-VYECVAENGVGDAVSAEASLTVYE 106
+ F G L I + DA C G G+ + A+ S T+ +
Sbjct: 196 ITWFSSEIAGRASFSGARNLVIRAAK--ITDAGRVWCELATGQGE-LDADRSSTILK 249
Score = 38.7 bits (89), Expect = 1e-04
Identities = 20/122 (16%), Positives = 27/122 (22%), Gaps = 31/122 (25%)
Query: 13 ITLRPRNQAVKAGGITSFYC---IARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
+ V AGG C +A PVI W K T+ + G
Sbjct: 5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLG 64
Query: 70 ---------------------------LRIEPVRHARDDAVYECVAENGVGDAVSAEASL 102
LR+ V D Y C +
Sbjct: 65 FVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQ-DGGRYWCQVAQWSIRTEFGLDAK 123
Query: 103 TV 104
+V
Sbjct: 124 SV 125
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 57.0 bits (138), Expect = 4e-12
Identities = 20/98 (20%), Positives = 30/98 (30%), Gaps = 9/98 (9%)
Query: 10 PPEITLR-PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
+ V G D ++W KNG+ + + S+Y+ +
Sbjct: 15 STAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFES-IGAKR 72
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L I DDA Y+CV L V E
Sbjct: 73 TLTISQCS-LADDAAYQCVVGG-----EKCSTELFVKE 104
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 56.6 bits (137), Expect = 5e-12
Identities = 24/103 (23%), Positives = 31/103 (30%), Gaps = 11/103 (10%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
T N V+ G F C P + WRK + + QE G +L
Sbjct: 8 ANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQE---GLTL 63
Query: 70 -LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
L I + A D Y C + A L V P
Sbjct: 64 RLTISALEKA-DSDTYTCDIGQ-----AQSRAQLLVQGRRSGP 100
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 58.6 bits (141), Expect = 6e-12
Identities = 18/101 (17%), Positives = 29/101 (28%), Gaps = 8/101 (7%)
Query: 12 EITLRPRNQA-VKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
+I P ++ + G S C G P WR + S L
Sbjct: 2 KIETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGK-----VTNEGTTSTL 56
Query: 71 RIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
+ PV ++ Y C A + +Y + P
Sbjct: 57 TMNPVS-FGNEHSYLCTATCESRKL-EKGIQVEIYSFPKDP 95
Score = 45.5 bits (107), Expect = 3e-07
Identities = 16/113 (14%), Positives = 29/113 (25%), Gaps = 12/113 (10%)
Query: 4 KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGD---PIPVIQWRKNGKRVSGTQS--RY 58
+V P+ + ++AG + C I K + +
Sbjct: 85 QVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDA 144
Query: 59 MVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDA------VSAEASLTVY 105
+ + PV V C A+ + + A L VY
Sbjct: 145 DRKSLETKSLEVTFTPVIE-DIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVY 196
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 56.2 bits (136), Expect = 6e-12
Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 10/97 (10%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P T + + G + C + ++W+K + + +
Sbjct: 8 PARFTQDLKTKEASEGATATLQCEL--SKVAPVEWKKGPETL--RDGGRYSLKQDGTRCE 63
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L+I + A D Y C+ A+LTV
Sbjct: 64 LQIHDLSVA-DAGEYSCMCGQ-----ERTSATLTVRA 94
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 59.5 bits (143), Expect = 6e-12
Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 19/105 (18%)
Query: 4 KVRFLDPPEITLR--PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQ 61
++R L P + R P N + C A G+P+P ++ K+G V
Sbjct: 362 ELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVT 421
Query: 62 EFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
+ Y C A + G V+ E ++ V
Sbjct: 422 R----------------DLEGTYLCRARSTQG-EVTREVTVNVLS 449
Score = 46.4 bits (109), Expect = 3e-07
Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 11/94 (11%)
Query: 12 EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR 71
+ ++ P + GG C D ++ + G +
Sbjct: 1 QTSVSPSKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLP---------GNNRKV 51
Query: 72 IEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
E ++D+ C + +A+ LTVY
Sbjct: 52 YELSN-VQEDSQPMCYSNCP-DGQSTAKTFLTVY 83
Score = 42.9 bits (100), Expect = 4e-06
Identities = 13/104 (12%), Positives = 23/104 (22%), Gaps = 20/104 (19%)
Query: 5 VRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP 64
V P + V G + C A +
Sbjct: 278 VTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQP--------------L 323
Query: 65 PGGSLLRIEPVRHARDDA-VYECVAENGVGDAV---SAEASLTV 104
+ L ++ D+ + C A V + + L V
Sbjct: 324 GPRAQLLLKATP--EDNGRSFSCSATLEVAGQLIHKNQTRELRV 365
Score = 42.9 bits (100), Expect = 4e-06
Identities = 12/87 (13%), Positives = 21/87 (24%), Gaps = 9/87 (10%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARG---DPIPVIQWRKNGKRVSGTQSRYMVQEFPPG 66
P + L P G + C G + + K + + P
Sbjct: 86 PERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVG-----EPA 140
Query: 67 GSLLRIEPVRHARDDAVYECVAENGVG 93
+ R A + C E +
Sbjct: 141 EVTTTVLVRR-DHHGANFSCRTELDLR 166
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 56.9 bits (137), Expect = 1e-11
Identities = 12/94 (12%), Positives = 25/94 (26%), Gaps = 15/94 (15%)
Query: 12 EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR 71
+T + + G + + P +Q R + GG L
Sbjct: 100 GLTANS-DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI------------QGGKTLS 146
Query: 72 IEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
+ + +D + C V + + V
Sbjct: 147 VSQLE-LQDSGTWTCTVLQNQK-KVEFKIDIVVL 178
Score = 44.2 bits (104), Expect = 1e-06
Identities = 14/108 (12%), Positives = 30/108 (27%), Gaps = 22/108 (20%)
Query: 22 VKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQ---------------EFPPG 66
K G C A W+ + + + + G
Sbjct: 7 GKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 66
Query: 67 GSLLRIEPVRHARDDAVYECVAENGVGDA------VSAEASLTVYEGE 108
L I+ ++ D Y C E+ + ++A + + +G+
Sbjct: 67 NFPLIIKNLKIE-DSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQ 113
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 57.6 bits (138), Expect = 1e-11
Identities = 14/98 (14%), Positives = 24/98 (24%), Gaps = 6/98 (6%)
Query: 9 DPPEITLRPRNQAVKAGGIT-SFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
+ + V G T C P I W+ N K + G + +
Sbjct: 111 NEEMGGITQTPYKVSISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGS---DE 165
Query: 68 SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
L ++ Y C + + L
Sbjct: 166 DHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRAR 203
Score = 36.0 bits (82), Expect = 8e-04
Identities = 8/72 (11%), Positives = 17/72 (23%), Gaps = 12/72 (16%)
Query: 36 GDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDA-VYECVAENGVGD 94
I W K+GK + + +D +Y+C
Sbjct: 26 DAEAKNITWFKDGKMIGFLTED---------KKKWNLGSNA--KDPRGMYQCKGSQNKSK 74
Query: 95 AVSAEASLTVYE 106
+ + +
Sbjct: 75 PLQVYYRMGSAD 86
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 54.6 bits (132), Expect = 2e-11
Identities = 15/97 (15%), Positives = 27/97 (27%), Gaps = 9/97 (9%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
E+ V G F +P QW+ G+ ++ + +
Sbjct: 5 LIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLA-ASPDCEI-IEDGKKHI 61
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L + + A N + A+L V E
Sbjct: 62 LILHNCQLG-MTGEVSFQAAN-----TKSAANLKVKE 92
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 57.5 bits (139), Expect = 3e-11
Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 5/91 (5%)
Query: 16 RPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPV 75
+ G + C + + + + ++V S V G L + V
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSV--RNGD-LFFKKV 308
Query: 76 RHARDDAVYECVAENGVGDAVSAEASLTVYE 106
+ D VY C A + + L VY
Sbjct: 309 QVE-DGGVYTCYAMGETFNE-TLSVELKVYN 337
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 55.1 bits (132), Expect = 3e-11
Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 10/98 (10%)
Query: 17 PRNQAVKAGGITSFYCIARGDPIPVIQWR--------KNGKRVSGTQSRYMVQEFPPGGS 68
+ G C AR + I + ++ K V+ E S
Sbjct: 15 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 74
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L I+ V + D +Y C A +G+ + V+E
Sbjct: 75 TLTIDGVTRS-DQGLYTCAASSGLM-TKKNSTFVRVHE 110
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 57.2 bits (137), Expect = 4e-11
Identities = 17/111 (15%), Positives = 30/111 (27%), Gaps = 16/111 (14%)
Query: 9 DPPEITLRPRNQ---AVKAGGITSFYCIAR----GDPIPVIQWRKNGKRVSGTQSRYMVQ 61
P + P + + G C D + W +GK+ +
Sbjct: 222 AVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTIN 281
Query: 62 EFPP--------GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
E +L I+ V Y C A + G+ + A +
Sbjct: 282 ESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEV-AKAAKVKQ 331
Score = 53.7 bits (128), Expect = 6e-10
Identities = 17/106 (16%), Positives = 29/106 (27%), Gaps = 15/106 (14%)
Query: 9 DPPEITLRPRNQAVKAGGITSFYCI-----ARGDPIPVIQWRKNGKRVSGTQSRYMVQEF 63
P ++ GI C P I W ++ +
Sbjct: 119 CFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVI----- 173
Query: 64 PPGGSLLRIEPVRHARDDAVYECVA---ENGVGDAVSAEASLTVYE 106
P G L + ++ Y CV ENG ++ ++ V
Sbjct: 174 -PEGMNLSFLIALIS-NNGNYTCVVTYPENGRTFHLTRTLTVKVVG 217
Score = 46.4 bits (109), Expect = 3e-07
Identities = 10/85 (11%), Positives = 17/85 (20%), Gaps = 5/85 (5%)
Query: 25 GGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP---PGGSLLRIEPVRHARDD 81
F + W + + +L P D
Sbjct: 33 EHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTL-LNDT 91
Query: 82 AVYECVAENGVGDAVSAEASLTVYE 106
Y C+ N + L V +
Sbjct: 92 GNYTCMLRNTTYCS-KVAFPLEVVQ 115
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 55.3 bits (133), Expect = 5e-11
Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 12/99 (12%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIAR-GDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
+ L+ + V G C + + + K+G+ + +
Sbjct: 85 SDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALK----------YWYENH 134
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEG 107
+ I D Y C + D S ++TV +
Sbjct: 135 NISITNATVE-DSGTYYCTGKVWQLDYESEPLNITVIKA 172
Score = 44.5 bits (105), Expect = 7e-07
Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 17/96 (17%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P+++L P + G + C +W NG T S
Sbjct: 5 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSS------------ 52
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
L I + D Y+C + S L V+
Sbjct: 53 LNIVNAKF-EDSGEYKCQHQQVNE---SEPVYLEVF 84
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 56.3 bits (135), Expect = 7e-11
Identities = 12/100 (12%), Positives = 27/100 (27%), Gaps = 15/100 (15%)
Query: 12 EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR 71
+T + + G + + P +Q R + GG L
Sbjct: 99 GLTANS-DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI------------QGGKTLS 145
Query: 72 IEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
+ + +D + C V + + V ++
Sbjct: 146 VSQLE-LQDSGTWTCTVLQNQK-KVEFKIDIVVLAFQKAS 183
Score = 44.4 bits (104), Expect = 1e-06
Identities = 15/108 (13%), Positives = 31/108 (28%), Gaps = 22/108 (20%)
Query: 22 VKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPP---------------G 66
K G C A W+ + + + + P G
Sbjct: 6 GKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 65
Query: 67 GSLLRIEPVRHARDDAVYECVAENGVGDA------VSAEASLTVYEGE 108
L I+ ++ D Y C E+ + ++A + + +G+
Sbjct: 66 NFPLIIKNLKIE-DSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQ 112
Score = 34.8 bits (79), Expect = 0.003
Identities = 14/103 (13%), Positives = 27/103 (26%), Gaps = 6/103 (5%)
Query: 13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQS----RYMVQEFPPGGS 68
L + + G + I + K VS + + + + P
Sbjct: 198 FPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHL 257
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
L ++A E G + E +L V +
Sbjct: 258 TLPQALPQYA-GSGNLTLALEAKTGK-LHQEVNLVVMRATQLQ 298
Score = 32.8 bits (74), Expect = 0.014
Identities = 9/73 (12%), Positives = 23/73 (31%), Gaps = 14/73 (19%)
Query: 32 CIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENG 91
C G P + + S+ + V + + +++C+ +
Sbjct: 303 CEVWGPTSPKLMLSLKLENKEAKVSKR-----------EKAVWVLNP-EAGMWQCLLSD- 349
Query: 92 VGDAVSAEASLTV 104
V E+++ V
Sbjct: 350 -SGQVLLESNIKV 361
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 56.0 bits (135), Expect = 1e-10
Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 4/96 (4%)
Query: 9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
P ++P V G +FYC PV+ W K+ + + QS ++ +
Sbjct: 481 AQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELK--QSVKYMKRYNGNDY 538
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
L I V+ D Y A+N G L V
Sbjct: 539 GLTINRVKGD-DKGEYTVRAKNSYGTK-EEIVFLNV 572
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 53.5 bits (128), Expect = 1e-10
Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 10/103 (9%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGK-------RVSGTQSRYMVQEF 63
+T V+ G + C+ +QW S+Y +
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 64 PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
+ + V +D+ VY+C+ + + E + V
Sbjct: 62 SANQLSITVPNVT-LQDEGVYKCLHYS--DSVSTKEVKVIVLA 101
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 54.5 bits (131), Expect = 2e-10
Identities = 20/103 (19%), Positives = 32/103 (31%), Gaps = 13/103 (12%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGD-PIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
+ L+ ++ G + C A D + + + +NGK S
Sbjct: 82 RGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHW----------NS 131
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
L I + + Y C SA S+TV E P
Sbjct: 132 NLTILKTNIS-HNGTYHCSGMGKHRYT-SAGISVTVKELFPAP 172
Score = 48.0 bits (114), Expect = 5e-08
Identities = 14/100 (14%), Positives = 28/100 (28%), Gaps = 17/100 (17%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVI-----QWRKNGKRVSGTQSRYMVQEFP 64
P + + + G + + C + + K + G +
Sbjct: 171 APVLNASVTSP-LLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNT-------- 221
Query: 65 PGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
S +I R D +Y C A G+ + L +
Sbjct: 222 --SSEYQILTARRE-DSGLYWCEAATEDGNVLKRSPELEL 258
Score = 45.3 bits (107), Expect = 5e-07
Identities = 19/99 (19%), Positives = 28/99 (28%), Gaps = 19/99 (19%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIP-VIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
ITL+P +V + +C P QW NG +
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPS------------ 49
Query: 70 LRIEPVRHARDDA-VYECVAENGVGDAVSAEASLTVYEG 107
RI +D+ Y C S L ++ G
Sbjct: 50 YRITSAS--VNDSGEYRCQRGLS---GRSDPIQLEIHRG 83
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 52.5 bits (125), Expect = 1e-09
Identities = 21/106 (19%), Positives = 35/106 (33%), Gaps = 11/106 (10%)
Query: 10 PPEITLRP-RNQAVKAGGITSFYCIARGDPIPVIQWR--------KNGKRVSGTQSRYMV 60
++ L P + G C AR + I + ++ K V+
Sbjct: 104 IYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG 163
Query: 61 QEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
E S L I+ V D +Y C A +G+ + V+E
Sbjct: 164 SEMKKFLSTLTIDGVT-RSDQGLYTCAASSGLMT-KKNSTFVRVHE 207
Score = 33.2 bits (75), Expect = 0.009
Identities = 8/105 (7%), Positives = 15/105 (14%), Gaps = 4/105 (3%)
Query: 7 FLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG 66
F+ C+ + +
Sbjct: 6 FIASVSDQHGVVYITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKK 64
Query: 67 GSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
G I + C A+ S + V
Sbjct: 65 G--FTIPSYM-ISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYD 106
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 50.1 bits (120), Expect = 1e-09
Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 9/95 (9%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
+ R +AG + C + W K+GK++S + +
Sbjct: 11 FAKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAV--GCTRR 67
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
L ++ A + Y C A L V
Sbjct: 68 LVVQQAGQA-EAGEYSCEAGG-----QQLSFRLQV 96
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 51.5 bits (123), Expect = 3e-09
Identities = 16/106 (15%), Positives = 30/106 (28%), Gaps = 9/106 (8%)
Query: 5 VRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP 64
V+ P + C A G P + W + +V ++ +
Sbjct: 111 VKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKRE 170
Query: 65 PG----GSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
S LRI + ++ C + + A L + E
Sbjct: 171 EKLFNVTSTLRINT----TTNEIFYCTFRRLDPE-ENHTAELVIPE 211
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 51.7 bits (123), Expect = 4e-09
Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 2/93 (2%)
Query: 15 LRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG-SLLRIE 73
LR +N V AG +F C A G + + G V + + + +
Sbjct: 169 LRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVV 228
Query: 74 PVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
RD Y C+ G +S A L V E
Sbjct: 229 NTTK-RDAGKYRCMIRTEGGVGISNYAELVVKE 260
Score = 35.1 bits (80), Expect = 0.003
Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Query: 24 AGGITSFYCIARGDPIPVIQWRKNGKRVSG-TQSRYMVQEFPPGGSLLRIEPVR 76
G+ + Y P+ W +G ++ + F P + E +
Sbjct: 90 PPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVIT 143
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 50.2 bits (120), Expect = 5e-09
Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 12/93 (12%)
Query: 13 ITLRPRNQAVKAGGITSFYCIARGD-PIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR 71
+ L+ + + G C + D P+ + + +NGK F
Sbjct: 88 LVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQK----------FSHLDPTFS 137
Query: 72 IEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
I H+ Y C G S ++TV
Sbjct: 138 IPQANHS-HSGDYHCTGNIGYTLFSSKPVTITV 169
Score = 46.0 bits (109), Expect = 2e-07
Identities = 17/96 (17%), Positives = 22/96 (22%), Gaps = 17/96 (17%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
+ L P V + C P IQW NG +
Sbjct: 5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQP------------ 52
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
D Y C ++S LTV
Sbjct: 53 SYRFKAN-NNDSGEYTCQTGQT---SLSDPVHLTVL 84
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 50.3 bits (120), Expect = 5e-09
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 17/92 (18%)
Query: 32 CIARGDPIPVIQWRK-----------NGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARD 80
D I I+W K K + Y + G+ L+I+ ++ D
Sbjct: 23 SFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKL---FKNGT-LKIKHLK-TDD 77
Query: 81 DAVYECVAENGVG-DAVSAEASLTVYEGEEKP 111
+Y+ + G + + L + E KP
Sbjct: 78 QDIYKVSIYDTKGKNVLEKIFDLKIQERVSKP 109
Score = 45.6 bits (108), Expect = 3e-07
Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 15/82 (18%)
Query: 25 GGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVY 84
T+ C P + ++GK + +Q + A +
Sbjct: 115 CINTTLTCEVMNGTDPELNLYQDGKHLKLSQR-------------VITHKWT-TSLSAKF 160
Query: 85 ECVAENGVGDAVSAEASLTVYE 106
+C A N V S+ ++ E
Sbjct: 161 KCTAGNKVSKE-SSVEPVSCPE 181
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 48.2 bits (115), Expect = 8e-09
Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 11/99 (11%)
Query: 10 PPEIT--LRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
P I + C P W K+G++V ++ + +
Sbjct: 8 PVHILSPQDKVSLTFTTSERVVLTCELSRVDFPA-TWYKDGQKVEESELLVVKMD--GRK 64
Query: 68 SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L + + D +EC E VSA +TV +
Sbjct: 65 HRLILPEAKVQ-DSGEFECRTEG-----VSAFFGVTVQD 97
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 47.8 bits (114), Expect = 1e-08
Identities = 18/98 (18%), Positives = 28/98 (28%), Gaps = 10/98 (10%)
Query: 10 PPEITLR-PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
V GG F DP ++W KNG+ + + +
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHK--GCQR 63
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
+L I + DD+ Y A + L V
Sbjct: 64 ILFINNCQMT-DDSEYYVTAGD-----EKCSTELFVRS 95
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 49.1 bits (117), Expect = 1e-08
Identities = 15/104 (14%), Positives = 27/104 (25%), Gaps = 13/104 (12%)
Query: 5 VRFLDPPEITLRPRNQAVKAGGITSFYCIAR-GDPIPVIQWRKNGKRVSGTQSRYMVQEF 63
+ + PR K C + + + + +NGK
Sbjct: 84 LEVHIGWLLLQAPRWV-FKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHH------- 135
Query: 64 PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEG 107
S I D Y C G + S ++T+ +
Sbjct: 136 ---NSDFHIPKATLK-DSGSYFCRGLVGSKNVSSETVNITITQA 175
Score = 42.6 bits (100), Expect = 4e-06
Identities = 18/99 (18%), Positives = 25/99 (25%), Gaps = 17/99 (17%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGTQSRYMVQEFPPGGS 68
+ L P+ +V + C P QW N +S S
Sbjct: 7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASS----------- 55
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEG 107
I+ D Y C S L V+ G
Sbjct: 56 -YFIDAAT-VNDSGEYRCQTNLSTL---SDPVQLEVHIG 89
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 47.4 bits (113), Expect = 2e-08
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 12/101 (11%)
Query: 9 DPPEITLRPR---NQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPP 65
D + P A C P ++W K+G+ V +S ++ +
Sbjct: 9 DVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEV--VESPALLLQKED 65
Query: 66 GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
L + V+ D Y C ++ SA ++TV E
Sbjct: 66 TVRRLVLPAVQLE-DSGEYLCEIDD-----ESASFTVTVTE 100
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 47.6 bits (113), Expect = 2e-08
Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 12/96 (12%)
Query: 17 PRNQAVKAGGITSFYCIARGDPIPVIQWRKN-------GKRVSGTQSRYMVQEFPPGGSL 69
+N V GG C + +QW + + +R +
Sbjct: 13 TQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELS 72
Query: 70 LRIEPVRHARDDAVYEC-VAENGVGDAVSAEASLTV 104
+ + V D+ Y C + V +++A LTV
Sbjct: 73 ISVSDVSL-SDEGQYTCSLFTMPV---KTSKAYLTV 104
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 48.7 bits (115), Expect = 4e-08
Identities = 13/88 (14%), Positives = 20/88 (22%), Gaps = 7/88 (7%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIAR-GDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
P + G + C + + W SR+ G
Sbjct: 6 CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGM-----GR 60
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAV 96
L + V+ D Y C V
Sbjct: 61 RLLLRSVQL-HDSGNYSCYRAGRPAGTV 87
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 48.1 bits (113), Expect = 7e-08
Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 2/76 (2%)
Query: 21 AVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL-LRIEPVRHAR 79
+ + F C + GKR + R ++ GS + I +R
Sbjct: 242 GPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLR-KE 300
Query: 80 DDAVYECVAENGVGDA 95
D Y C A +
Sbjct: 301 DAGRYLCGAHSDGQLQ 316
Score = 44.2 bits (103), Expect = 1e-06
Identities = 15/88 (17%), Positives = 24/88 (27%), Gaps = 6/88 (6%)
Query: 29 SFYCIARGDPIPVIQWRKNGKRVSGTQSRY---MVQEFPPGGSL--LRIEPVRHARDDAV 83
F C +W G + +Q L L + V D+
Sbjct: 465 HFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVT-RADEGW 523
Query: 84 YECVAENGVGDAVSAEASLTVYEGEEKP 111
Y C + G +A + V E +
Sbjct: 524 YWCGVKQGHFYGETAAVYVAVEERKAAG 551
Score = 37.7 bits (86), Expect = 3e-04
Identities = 14/98 (14%), Positives = 27/98 (27%), Gaps = 18/98 (18%)
Query: 17 PRNQAVKAGGITSFYCIARGDPIPVIQW----------------RKNGKRVSGTQSRYMV 60
P AG + C I++ G + + R +
Sbjct: 338 PTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSL 397
Query: 61 QEFPPGGSL-LRIEPVRHARDDAVYECVAENGVGDAVS 97
E P G+ + + + +RD Y C+ +
Sbjct: 398 LEEPGNGTFTVILNQLT-SRDAGFYWCLTNGDTLWRTT 434
Score = 36.1 bits (82), Expect = 0.001
Identities = 18/118 (15%), Positives = 30/118 (25%), Gaps = 17/118 (14%)
Query: 9 DPPEITLRPRNQAVKAGGITSFYCI--ARGDPIPVIQWRKNGK-----------RVSGTQ 55
P + + V G + C +++ G
Sbjct: 111 QGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYT 170
Query: 56 SRYMVQEFPPGGSL--LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
R + G L + I +R D Y C A + A L V + E +
Sbjct: 171 GRIRLDIQGTGQLLFSVVINQLR-LSDAGQYLCQAGDDSNSN-KKNADLQVLKPEPEL 226
Score = 35.4 bits (80), Expect = 0.002
Identities = 11/68 (16%), Positives = 19/68 (27%), Gaps = 2/68 (2%)
Query: 30 FYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL-LRIEPVRHARDDAVYECVA 88
++C + G S R + FP G+ + I + D Y+C
Sbjct: 36 YWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQ-DDSGRYKCGL 94
Query: 89 ENGVGDAV 96
Sbjct: 95 GINSRGLS 102
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 46.7 bits (110), Expect = 7e-08
Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 10/109 (9%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN-------GKRVSGTQSRYMVQE 62
+ ++ V AGG C + +QW G++ + +R +
Sbjct: 38 QDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVT 97
Query: 63 FPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
P + I V D+ Y C +A++ +TV +KP
Sbjct: 98 STPHELSISISNVAL-ADEGEYTCSIFT--MPVRTAKSLVTVLGIPQKP 143
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 47.4 bits (112), Expect = 9e-08
Identities = 22/102 (21%), Positives = 32/102 (31%), Gaps = 10/102 (9%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARG-DPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG- 67
P+ T + + + C++ G P I W + + T V F G
Sbjct: 116 KPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQ---VPGFLSGTV 172
Query: 68 ---SLLRIEPVRHARDDAVYECVAEN-GVGDAVSAEASLTVY 105
SL + P D C E+ SLTVY
Sbjct: 173 TVTSLWILVPSSQV-DGKQVTCKVEHESFEKPQLLTVSLTVY 213
Score = 35.8 bits (82), Expect = 0.001
Identities = 18/110 (16%), Positives = 31/110 (28%), Gaps = 22/110 (20%)
Query: 17 PRNQAVKAGGITSFYCIARGDPIPV-----IQWRKNGK------------RVSGTQSRYM 59
P G + C + + V + W ++G+ R
Sbjct: 6 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLE 65
Query: 60 VQEFPPGGSL----LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
G L LR+ +R D+ Y C+ + S + L V
Sbjct: 66 FVAARLGAELRDASLRMFGLR-VEDEGSYTCLFVTFPQGSRSVDIWLRVL 114
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 47.2 bits (111), Expect = 1e-07
Identities = 21/103 (20%), Positives = 28/103 (27%), Gaps = 10/103 (9%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARG-DPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
P ++ AV G C D +QWR + QS G S
Sbjct: 7 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSD-------TGRS 59
Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
+L + CV G G L VY +
Sbjct: 60 VLTVRNAS-LSAAGTRVCVGSCG-GRTFQHTVQLLVYAFPNQL 100
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 47.0 bits (111), Expect = 1e-07
Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 16/98 (16%)
Query: 17 PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSR-----YMVQEFPPGGSLLR 71
R V G C ARG P+ + W+ + + R Y V S+LR
Sbjct: 110 TRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRTPEGLYQVT------SVLR 163
Query: 72 IEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEE 109
++P + + C+ N A + E
Sbjct: 164 LKP----QPSRNFSCMFWNAHM-KELTSAIIDPLSRME 196
Score = 41.6 bits (97), Expect = 9e-06
Identities = 18/106 (16%), Positives = 29/106 (27%), Gaps = 11/106 (10%)
Query: 13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRY------MVQEFPPG 66
+T V G S C ++ + + + +++E P
Sbjct: 5 VTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPL 64
Query: 67 GSL-LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
G I V+ RD Y C+ G LTV
Sbjct: 65 GKALFHIPSVQ-VRDSGQYRCLVICGAA---WDYKYLTVKVKASYM 106
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 45.3 bits (107), Expect = 3e-07
Identities = 16/108 (14%), Positives = 27/108 (25%), Gaps = 13/108 (12%)
Query: 5 VRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGTQSRYMVQEF 63
+ + PR K C + + + + +NGK
Sbjct: 84 LEVHIGWLLLQAPRWV-FKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHH------- 135
Query: 64 PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
S I D Y C G + S +T+ +G
Sbjct: 136 ---NSDFYIPKATLK-DSGSYFCRGLVGSKNVSSETVQITITQGLAVS 179
Score = 39.1 bits (91), Expect = 7e-05
Identities = 19/99 (19%), Positives = 28/99 (28%), Gaps = 19/99 (19%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
+ L P+ V + C P QW N +S S
Sbjct: 8 AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASS------------ 55
Query: 70 LRIEPVRHARDDA-VYECVAENGVGDAVSAEASLTVYEG 107
I+ DD+ Y C + +S L V+ G
Sbjct: 56 YFIDAAT--VDDSGEYRCQTQLST---LSDPVQLEVHIG 89
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 43.8 bits (103), Expect = 2e-06
Identities = 16/113 (14%), Positives = 30/113 (26%), Gaps = 15/113 (13%)
Query: 7 FLDPPEITLRPRNQAVKAGGITSFYCIAR-------GDPIPVIQWRKNGKRVSGTQSRYM 59
LDP P + V+ + C+ + I W+ N + Q +
Sbjct: 1 LLDPCGYIS-PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTII 59
Query: 60 VQEFPPGGSLLRIEPVRHARDDAVYECVAEN-GVGDAVSAEASLTVYEGEEKP 111
S + + + C G + ++ EKP
Sbjct: 60 ----NRTASSVTFTDIAS--LNIQLTCNILTFGQLEQNVYGITIISGLPPEKP 106
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 43.7 bits (102), Expect = 2e-06
Identities = 14/120 (11%), Positives = 37/120 (30%), Gaps = 23/120 (19%)
Query: 6 RFLDPPEITLRPRNQAVKAGGITSFYCI---ARGDPIPVIQWRKNGKRVSGTQ------- 55
R P +T+ V G C+ + + W + + ++
Sbjct: 1 RSQGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYS 60
Query: 56 ------SRY-----MVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
R+ +V + L ++ V+ D+ +Y C +++ + + +
Sbjct: 61 NLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQ-KADEGIYTCEIRLK-NESMVMKKPVEL 118
Score = 41.8 bits (97), Expect = 9e-06
Identities = 19/121 (15%), Positives = 37/121 (30%), Gaps = 27/121 (22%)
Query: 13 ITLRPRNQAVKAGGITSFYCIARGDP---IPVIQWRKNGK------RVSGTQSRYMVQEF 63
+ PR+ V+ G T C + + + W + V S +F
Sbjct: 121 LPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKF 180
Query: 64 PPGGSL----------------LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEG 107
G ++++ V+ + D +Y C G ++ L V +
Sbjct: 181 QSLGRFRNRVDLTGDISRNDGSIKLQTVKES-DQGIYTCSIYVGKLES-RKTIVLHVVQD 238
Query: 108 E 108
E
Sbjct: 239 E 239
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 42.8 bits (100), Expect = 4e-06
Identities = 12/96 (12%), Positives = 24/96 (25%), Gaps = 11/96 (11%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
P L+PR V+ GG C + +R +
Sbjct: 2 PFWADLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRG--------LRWLA 53
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
++ +R + C + A + +
Sbjct: 54 RQLVDIRE--PETQPVCFFRCA-RRTLQARGLIRTF 86
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 42.2 bits (98), Expect = 6e-06
Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 11/94 (11%)
Query: 12 EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR 71
+ ++ P + GG C D ++ + PG +
Sbjct: 1 QTSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELL---------LPGNNRKV 51
Query: 72 IEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
E ++D+ C + +A+ LTVY
Sbjct: 52 YELSN-VQEDSQPMCYSNCP-DGQSTAKTFLTVY 83
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 42.1 bits (98), Expect = 7e-06
Identities = 23/114 (20%), Positives = 38/114 (33%), Gaps = 19/114 (16%)
Query: 10 PPEITLRPRNQAV-KAGGITSFYCIAR-GDPIPVIQWRKNGKRVSGTQS------RYMVQ 61
E++ +V + C +R G+P P I W +NG+R+
Sbjct: 118 ATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRT 177
Query: 62 EFPPGG-----SLLRIEPVRHARDDAVYECVAENGV-----GDAVSAEASLTVY 105
G S L + + DA + C A + G S LT++
Sbjct: 178 VREASGLLSLTSTLYLRLRKDD-RDASFHCAAHYSLPEGRHGRLDSPTFHLTLH 230
Score = 37.9 bits (87), Expect = 2e-04
Identities = 18/108 (16%), Positives = 29/108 (26%), Gaps = 20/108 (18%)
Query: 17 PRNQAVKAGGITSFYCIARG-DPIPVIQWRKNGK-------------RVSGTQSRYMVQE 62
P V G C G +++W + + + +
Sbjct: 7 PPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRG 66
Query: 63 FPPGGSL-----LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
P L L + + D+ Y CV G A A L V+
Sbjct: 67 RSPPYQLDSQGRLVLAEAQ-VGDERDYVCVVRAGAAGTAEATARLNVF 113
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 41.4 bits (97), Expect = 7e-06
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 14/88 (15%)
Query: 33 IARGDPIPVIQWRKNGKRV---------SGTQSRYMVQEFPPGGSLLRIEPVRHARDDAV 83
+ P+ + W+K +V + + + V GS L I + + D+
Sbjct: 17 VPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGS-LTIYNLTSS-DEDE 74
Query: 84 YECVAENGVGDAVSAEASLTVYEGEEKP 111
YE + N + + L V E KP
Sbjct: 75 YEMESPNITD---TMKFFLYVLEMVSKP 99
Score = 32.2 bits (73), Expect = 0.019
Identities = 11/99 (11%), Positives = 22/99 (22%), Gaps = 23/99 (23%)
Query: 8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
+ P I N + C ++ + + +
Sbjct: 96 VSKPMIYWECSN--------ATLTCEVLEGTDVELKLYQGKEHLRS-------------L 134
Query: 68 SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
+ A ++C A N V S + E
Sbjct: 135 RQKTMSYQWT-NLRAPFKCKAVNRVSQE-SEMEVVNCPE 171
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 40.1 bits (93), Expect = 1e-05
Identities = 17/95 (17%), Positives = 26/95 (27%), Gaps = 8/95 (8%)
Query: 9 DPPEITLRPRNQAVKAGGIT-SFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
+ IT P V G T C P I W+ N K + G + +
Sbjct: 6 EMGGITQTP--YKVSISGTTVILTC--PQYPGSEILWQHNDKNIGGDEDDKNIGS---DE 58
Query: 68 SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASL 102
L ++ Y C + + L
Sbjct: 59 DHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYL 93
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 40.7 bits (95), Expect = 2e-05
Identities = 10/86 (11%), Positives = 22/86 (25%), Gaps = 22/86 (25%)
Query: 8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
+ P I N + C ++ + + + + + M
Sbjct: 101 VSKPMIYWECSN--------ATLTCEVLEGTDVELKLYQGKEHLRSLRQKTM-------- 144
Query: 68 SLLRIEPVRHARDDAVYECVAENGVG 93
+ A ++C A N V
Sbjct: 145 ------SYQWTNLRAPFKCKAVNRVS 164
Score = 39.9 bits (93), Expect = 3e-05
Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 17/91 (18%)
Query: 32 CIARGDPIPVIQWRKNGKRVSGTQ---------SRYMVQEFPPGGSLLRIEPVRHARDDA 82
D I ++W + V+ + + + G L I+ + RDD+
Sbjct: 20 NFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEI---LANGDLK-IKNLT--RDDS 73
Query: 83 -VYECVAENGVG-DAVSAEASLTVYEGEEKP 111
Y + G ++ L + E KP
Sbjct: 74 GTYNVTVYSTNGTRILNKALDLRILEMVSKP 104
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 39.6 bits (92), Expect = 4e-05
Identities = 15/92 (16%), Positives = 24/92 (26%), Gaps = 15/92 (16%)
Query: 3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQSRYMVQ 61
R +R L ++T + C D +W G +
Sbjct: 103 RILRQLRNIQVTNHSQLF-QNMTCELHLTCSVEDADDNVSFRWEALGNTL---------- 151
Query: 62 EFPPGGSLLRIEPVRHARDDAVYECVAENGVG 93
L + + Y C+AEN V
Sbjct: 152 ---SSQPNLTVSWDPRISSEQDYTCIAENAVS 180
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 39.4 bits (91), Expect = 7e-05
Identities = 5/60 (8%), Positives = 25/60 (41%)
Query: 2 YRKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQ 61
+++ ++ + + P+++ + G +F C+++ + + N + ++
Sbjct: 190 VKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLIHLDGENVAIK 249
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 36.0 bits (83), Expect = 4e-04
Identities = 16/101 (15%), Positives = 28/101 (27%), Gaps = 13/101 (12%)
Query: 17 PRNQAVKAGGITSFYCIARGDPIPVIQ--WRKNGKRVSGTQSRYMVQ---------EFPP 65
N + + GG C V Q W + + ++ + P
Sbjct: 10 TGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGP 69
Query: 66 GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
G L ++ + D Y C+ + L V E
Sbjct: 70 GLGL-TLQSLTVN-DTGEYFCIYHTYPDGTYTGRIFLEVLE 108
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 36.3 bits (83), Expect = 6e-04
Identities = 16/100 (16%), Positives = 35/100 (35%), Gaps = 12/100 (12%)
Query: 12 EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR 71
E+ +RP+ AV+ G C + V + ++ + + +
Sbjct: 4 EVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLNKILLDE-----------QAQWK 52
Query: 72 IEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
V + D V +C G S ++++VY+ +
Sbjct: 53 HYLVSNISHDTVLQCHFTCS-GKQESMNSNVSVYQPPRQV 91
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 36.4 bits (83), Expect = 7e-04
Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 11/55 (20%)
Query: 37 DPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENG 91
D ++W KNG+ + ++ L ++ D Y C
Sbjct: 24 DSDENLKWEKNGQELPQKHDKH-----------LVLQDFSEVEDSGYYVCYTPAS 67
Score = 30.2 bits (67), Expect = 0.097
Identities = 13/96 (13%), Positives = 24/96 (25%), Gaps = 19/96 (19%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
+ + + G C G I+W K+G +S + +
Sbjct: 107 TNKAKNLVQVDGSRGDGSVLLTC---GLTDKTIKWLKDGSIISPLNAT---------KNT 154
Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
+ Y+C + L VY
Sbjct: 155 WNLGNNA-KDPRGTYQCQGAKETSN------PLQVY 183
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 35.7 bits (82), Expect = 0.001
Identities = 14/89 (15%), Positives = 26/89 (29%), Gaps = 12/89 (13%)
Query: 9 DPPEITLRPRNQAVKAGGITSFYCIARGD-PIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
T + + I C G P P + W +NG+ ++ + P
Sbjct: 105 KADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQD--PETE 162
Query: 68 -----SLLRIEPVRHARDDAVYECVAENG 91
S L + + C+ + G
Sbjct: 163 LYAVSSKLDFNMTTN----HSFMCLIKYG 187
Score = 31.5 bits (71), Expect = 0.031
Identities = 18/74 (24%), Positives = 24/74 (32%), Gaps = 10/74 (13%)
Query: 40 PVIQWRKNGKRV---SGTQSRYMVQ-----EFPPGGSL-LRIEPVRHARDDAVYECVAEN 90
I W+K K V + F +L + I +R D+ YECV
Sbjct: 28 TRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALR-PSDEGTYECVVLK 86
Query: 91 GVGDAVSAEASLTV 104
DA E V
Sbjct: 87 YEKDAFKREHLAEV 100
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 35.6 bits (81), Expect = 0.001
Identities = 12/98 (12%), Positives = 25/98 (25%), Gaps = 12/98 (12%)
Query: 7 FLDPPEITLRPRNQAVKAGGITSFYCIAR-------GDPIPVIQWRKNGKRVSGTQSRYM 59
LDP P + V+ + C+ + I W+ N + Q +
Sbjct: 2 LLDPCGYIS-PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTII 60
Query: 60 VQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVS 97
+ S + + + + V
Sbjct: 61 NR----TASSVTFTDIASLNIQLTCNILTFGQLEQNVY 94
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 34.8 bits (79), Expect = 0.001
Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 14/108 (12%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPI---PVIQWRKNGKRV---SGTQSRYMVQEF 63
+P + +V+ G G + P I+W K GK + S + +R+ +E
Sbjct: 12 TGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFK-GKWLELGSKSGARFSFKES 70
Query: 64 PPGGSL-----LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
S L I V D Y + S ++ V
Sbjct: 71 HNSASNVYTVELHIGKVV-LGDRGYYRLEVKAKDT-CDSCGFNIDVEA 116
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 35.7 bits (81), Expect = 0.002
Identities = 18/100 (18%), Positives = 30/100 (30%), Gaps = 9/100 (9%)
Query: 17 PRNQAVKAGGITSFYCIAR-----GDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR 71
V G + CI + DP P I WR + G + + + S++
Sbjct: 7 VSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQ--ESIIT 64
Query: 72 IEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
+ + H A C G + + L P
Sbjct: 65 LPHLNHT--QAFLSCSLNWGNSLQILDQVELRAGYPPAIP 102
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 34.5 bits (79), Expect = 0.003
Identities = 9/86 (10%), Positives = 20/86 (23%), Gaps = 22/86 (25%)
Query: 8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
+ P I N + C ++ + + +
Sbjct: 106 VSKPMIYWECSN--------ATLTCEVLEGTDVELKLYQGKEHLR-----------SLRQ 146
Query: 68 SLLRIEPVRHARDDAVYECVAENGVG 93
+ + A ++C A N V
Sbjct: 147 KTMSYQWTN---LRAPFKCKAVNRVS 169
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 33.4 bits (76), Expect = 0.005
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 2/77 (2%)
Query: 35 RGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGD 94
+++W + ++ + V+ P G+L I V+ D++ Y G+
Sbjct: 41 YTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGAL-YISKVQKE-DNSTYIMRVLKKTGN 98
Query: 95 AVSAEASLTVYEGEEKP 111
+ L V + KP
Sbjct: 99 EQEWKIKLQVLDPVPKP 115
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 33.5 bits (76), Expect = 0.006
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 7/90 (7%)
Query: 25 GGITSFYCIARGD-PIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAV 83
G C + G P P IQW N T +V + G L + R +
Sbjct: 133 DGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVAD---GVGLYAVAASVIMRGSSG 189
Query: 84 --YECVAENGVGDAVSAEASLTVYEGEEKP 111
C + + AS+++ + +
Sbjct: 190 EGVSCTIRSSLLGL-EKTASISIADPFFRS 218
>3gbl_A BETA2-microglobulin; immune response, immunoglobulin domain, MHC
I, secreted, immune system; 2.10A {Ctenopharyngodon
idella}
Length = 97
Score = 30.0 bits (68), Expect = 0.055
Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 16/89 (17%)
Query: 9 DPPEITLRPRNQAVKAGGITSFYCIARG-DPIPV-IQWRKNGKRVSGTQSRYMVQEFPPG 66
P+I + + G + C G P + I+ KNG+ ++ Q
Sbjct: 3 SSPKIQVYSHYP-GEYGKENTLICYVSGFHPPDISIELLKNGEVIADAQQ---TDLAFEK 58
Query: 67 G------SLLRIEPVRHARDDAVYECVAE 89
G + +P Y C
Sbjct: 59 GWQFHLTKSVSFKP----EKSDEYSCSVR 83
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune
system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
b.1.1.2
Length = 344
Score = 30.6 bits (69), Expect = 0.079
Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARG-DPIPV-IQWRKNGKRVSGTQSRYMVQEF 63
P++ P ++ S C+ +G P + ++W NG+ + ++ V +
Sbjct: 242 EPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDS 297
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 30.4 bits (67), Expect = 0.10
Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 15/101 (14%)
Query: 4 KVRFLDPPEITLRPRNQAVKAGG--ITSFYCIARG---DPIPVIQWRKNGKRVSGTQSRY 58
++ PP+++L P A A G C+ ++W G +Q
Sbjct: 285 ELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAE 344
Query: 59 MVQEFPPGG----------SLLRIEPVRHARDDAVYECVAE 89
+ L+ PV + A Y C
Sbjct: 345 GQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIH 385
>3o81_A Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like)
domain, histocompatibi antigen, MHC class I molecule
from B21 chicken, immune SYST; 2.00A {Gallus gallus}
Length = 119
Score = 28.9 bits (65), Expect = 0.19
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 9 DPPEITLRPRNQAVKAGGITSFYCIARG-DPIPV-IQWRKNGKRVSGTQS 56
P++ + R AG C A G P + I K+G + G Q
Sbjct: 23 LTPKVQVYSRFP-ASAGTKNVLNCFAAGFHPPKISITLMKDGVPMEGAQY 71
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 29.3 bits (64), Expect = 0.22
Identities = 13/88 (14%), Positives = 22/88 (25%), Gaps = 5/88 (5%)
Query: 8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKR-VSGTQSRYMVQ--EFP 64
L + G + C I W + V G+ +Q EF
Sbjct: 4 LKKDVYVVELDWYPDAPGEMVVLTC--DTPEEDGITWTLDQSSEVLGSGKTLTIQVKEFG 61
Query: 65 PGGSLLRIEPVRHARDDAVYECVAENGV 92
G + + E+G+
Sbjct: 62 DAGQYTCHKGGEVLSHSLLLLHKKEDGI 89
>1lk2_B Beta-2-microglobulin; class I MHC-peptide complex, high
resolution, anisotropic AN refinement, immune system;
HET: NAG FUC; 1.35A {Mus musculus} SCOP: b.1.1.2 PDB:
1bqh_B 1cd1_B 1fo0_L* 1fzj_B* 1fzm_B* 1fzo_B* 1g6r_L
1fzk_B* 1g7q_B* 1hoc_B 1inq_B 1juf_B 1k8d_B 1kbg_L*
1kj2_L* 1kj3_L 1kpu_B* 1kpv_B* 1ld9_B 1ldp_L* ...
Length = 99
Score = 28.1 bits (63), Expect = 0.26
Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 16/89 (17%)
Query: 9 DPPEITLRPRNQAVKAGGITSFYCIARG-DPIPV-IQWRKNGKRVSGTQSRYMVQEFPPG 66
P+I + R+ + G C P + IQ KNGK++ +
Sbjct: 3 KTPQIQVYSRHP-PENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEM---SDMSFSK 58
Query: 67 G------SLLRIEPVRHARDDAVYECVAE 89
+ P + Y C +
Sbjct: 59 DWSFYILAHTEFTP----TETDTYACRVK 83
>3p73_B Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like)
domain, histocompatibi antigen, immune system; HET:
16A; 1.32A {Gallus gallus} PDB: 3p77_B* 3bev_B 3bew_B
3jvg_C* 2yez_B 2yf5_B 2yf6_B 2yf1_B*
Length = 99
Score = 27.7 bits (62), Expect = 0.38
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARG-DPIPV-IQWRKNGKRVSGTQS 56
P++ + R AG C A G P + I K+G + G Q
Sbjct: 4 TPKVQVYSRFP-ASAGTKNVLNCFAAGFHPPKISITLMKDGVPMEGAQY 51
>2c9a_A Receptor-type tyrosine-protein phosphatase MU; glycoprotein,
hydrolase, immunoglobulin domain; HET: NAG MAN NDG FUL;
2.7A {Homo sapiens} SCOP: b.1.1.4 b.29.1.25
Length = 259
Score = 28.3 bits (62), Expect = 0.43
Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 8/94 (8%)
Query: 15 LRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQ----SRYMVQEFPPGGSLL 70
LR +N V AG +F C A G + + G V + F +++
Sbjct: 169 LRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVV 228
Query: 71 RIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
RD Y C+ G +S A L V
Sbjct: 229 NTTK----RDAGKYRCMIRTEGGVGISNYAELVV 258
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 0.59
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 99 EASLTVYEGEEKP 111
+ASL +Y + P
Sbjct: 26 QASLKLYADDSAP 38
>1k5n_B Beta-2-microglobulin, light chain; MHC(major histocompatibility
complex), HLA(human leukocyte A immune system; 1.09A
{Homo sapiens} SCOP: b.1.1.2 PDB: 1a9b_B 1b0g_B 1b0r_B
1bd2_B 1cg9_B 1a9e_B 1duy_B 1eey_B 1eez_B 1efx_B
1gzp_B* 1gzq_B* 1hhg_B 1hhh_B 1hhi_B 1hhj_B 1hhk_B
1i1f_B 1i1y_B 1duz_B* ...
Length = 100
Score = 27.3 bits (61), Expect = 0.67
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARG-DPIPV-IQWRKNGKRVSGTQS 56
P+I + R+ + G C G P + + KNG+R+ +
Sbjct: 5 TPKIQVYSRHP-AENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEH 52
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 0.84
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 6/29 (20%)
Query: 82 AVYECVAENGVGDAVSAEA--SLTVYEGE 108
A +E + G+ A + A SL GE
Sbjct: 1742 AAFEDLKSKGLIPADATFAGHSL----GE 1766
>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell
receptor, signalling, immune SY; 4.10A {Cricetulus
migratorius}
Length = 82
Score = 26.6 bits (58), Expect = 0.94
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 37 DPIPVIQWRKNGKRVSGTQSRYMVQE 62
D ++W KNG+ + +++V +
Sbjct: 24 DSDENLKWEKNGQELPQKHDKHLVLQ 49
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN
inhibitor, ATP-binding mutation, membrane,
nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A
{Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A*
Length = 327
Score = 26.9 bits (60), Expect = 1.2
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 52 SGTQSRYMVQEFPPGGSLL 70
G QS +V E+ P G L
Sbjct: 96 PGRQSLRLVMEYLPSGCLR 114
>1bii_B Beta-2 microglobulin, MHC class I H-2DD; complex (MHC I/peptide),
major histocompatibility complex class I DD,
transmembrane, glycoprotein; 2.40A {Mus musculus} SCOP:
b.1.1.2
Length = 119
Score = 26.3 bits (58), Expect = 1.6
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 9 DPPEITLRPRNQAVKAGGITSFYCIARG-DPIPV-IQWRKNGKRVSGTQS 56
P+I + R+ + G C P + IQ KNGK++ +
Sbjct: 23 KTPQIQVYSRHP-PENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEM 71
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 26.3 bits (58), Expect = 1.7
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 45 RKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
KR+ +R + LR+ +R D+ Y C+ + S + L V
Sbjct: 59 YSESKRLEFVAAR---LGAELRNASLRMFGLR-VEDEGNYTCLFVTFPQGSRSVDIWLRV 114
Query: 105 Y 105
Sbjct: 115 L 115
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP
binding, transferase-transfera inhibitor complex; HET:
046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A*
3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A*
3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A*
Length = 295
Score = 26.1 bits (58), Expect = 2.5
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 52 SGTQSRYMVQEFPPGGSLL 70
+G ++ ++ E+ P GSL
Sbjct: 83 AGRRNLKLIMEYLPYGSLR 101
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding,
tyrosine-protein kinase, proto-oncogene, phosphoprotein,
disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo
sapiens}
Length = 326
Score = 26.2 bits (58), Expect = 2.6
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 52 SGTQSRYMVQEFPPGGSLL 70
+G ++ ++ E+ P GSL
Sbjct: 114 AGRRNLKLIMEYLPYGSLR 132
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation,
cancer, PAN inhibitor, ATP-binding nucleotide-binding,
phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo
sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A*
Length = 318
Score = 26.1 bits (58), Expect = 2.6
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 52 SGTQSRYMVQEFPPGGSLL 70
+G S +V E+ P GSL
Sbjct: 105 AGAASLQLVMEYVPLGSLR 123
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 26.0 bits (57), Expect = 2.7
Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGK 49
P ++ + G S C + P K G+
Sbjct: 106 KPFLSADRG-LVLMPGENISLTCSSAHIPFDRFSLAKEGE 144
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus,
PP65, T cell receptor (TCR), immune response, public
response; 2.80A {Homo sapiens}
Length = 199
Score = 25.7 bits (56), Expect = 3.7
Identities = 17/75 (22%), Positives = 21/75 (28%), Gaps = 4/75 (5%)
Query: 38 PIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL-LRIEPVRHARDDAVYECVAENGVGDAV 96
P + NG + R G L I+ D A Y C G
Sbjct: 43 PEALFVMTLNGD--EKKKGRISATLNTKEGYSYLYIKGS-QPEDSATYLCARNTGNQFYF 99
Query: 97 SAEASLTVYEGEEKP 111
SLTV + P
Sbjct: 100 GTGTSLTVIPNIQNP 114
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase,
ATP binding, phosphoryla transferase; HET: ATP; 1.75A
{Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Length = 289
Score = 25.3 bits (56), Expect = 4.3
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 51 VSGTQSRYMVQEFPPGGSLL 70
+VQEF GSL
Sbjct: 81 CVCGDENILVQEFVKFGSLD 100
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 25.1 bits (55), Expect = 5.2
Identities = 3/26 (11%), Positives = 9/26 (34%)
Query: 86 CVAENGVGDAVSAEASLTVYEGEEKP 111
+ +GD + + ++ P
Sbjct: 3 SGSSGRIGDGSPSHPPILERTLDDVP 28
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain,
transferase-transferase inhibit complex; HET: PTR 0NT;
1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A*
3eyh_A*
Length = 302
Score = 25.0 bits (55), Expect = 6.0
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 52 SGTQSRYMVQEFPPGGSLL 70
G ++ EF P GSL
Sbjct: 95 DGGNGIKLIMEFLPSGSLK 113
>3jts_B Beta-2-microglobulin; alpha helix, beta sheet, beta barrel,
immune response, MHC I membrane, transmembrane, disease
mutation; 2.80A {Homo sapiens}
Length = 119
Score = 24.6 bits (54), Expect = 6.2
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVI--QWRKNGKRVSGTQS 56
P+I + R+ + G C G I KNG+R+ +
Sbjct: 22 QRTPKIQVYSRHP-AENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEH 71
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase
domain, multitargeted small M kinase inhibitor; HET:
ITI; 2.70A {Homo sapiens}
Length = 327
Score = 24.9 bits (55), Expect = 6.5
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 51 VSGTQSRYMVQEFPPGGSLL 70
+ T + ++ + P G LL
Sbjct: 85 ICLTSTVQLITQLMPFGCLL 104
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase;
2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A*
1u54_A* 3eqr_A* 3eqp_B*
Length = 291
Score = 24.9 bits (55), Expect = 7.1
Identities = 10/20 (50%), Positives = 10/20 (50%)
Query: 51 VSGTQSRYMVQEFPPGGSLL 70
V T MV E P GSLL
Sbjct: 89 VVLTPPMKMVTELAPLGSLL 108
>2ibl_A Fibritin; foldon, trimerization, bacteriophage T4, HELP molecule,
chaperone; 1.32A {Unidentified phage} PDB: 1ox3_A
Length = 130
Score = 24.3 bits (52), Expect = 9.1
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 42 IQWRKNGKRVSGTQSRY 58
I W KNG+ + G ++Y
Sbjct: 33 ISWIKNGEEILGADTQY 49
>3fdj_A DEGV family protein; GUT microbiome, structural genomics, PSI-2,
protein ST initiative, midwest center for structural
genomics, MCSG; HET: MSE P6G PG4; 1.80A {Eubacterium
eligens}
Length = 278
Score = 24.5 bits (54), Expect = 9.3
Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 9/41 (21%)
Query: 45 RKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYE 85
+NG RVS + +L I + A E
Sbjct: 166 AQNG-RVSKVVA--SA------AEVLGISVIGTASSHGTLE 197
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic hydrocar
catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida}
Length = 410
Score = 24.4 bits (54), Expect = 9.9
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 64 PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEA 100
G +E +A+ A VA +G VSA
Sbjct: 281 LRAGGRRSLETYMNAQRQA--AAVAAAILGKNVSAPQ 315
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.413
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,810,211
Number of extensions: 102477
Number of successful extensions: 1000
Number of sequences better than 10.0: 1
Number of HSP's gapped: 663
Number of HSP's successfully gapped: 370
Length of query: 111
Length of database: 6,701,793
Length adjustment: 75
Effective length of query: 36
Effective length of database: 4,607,718
Effective search space: 165877848
Effective search space used: 165877848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)