Query psy2443
Match_columns 77
No_of_seqs 150 out of 1020
Neff 10.7
Searched_HMMs 46136
Date Sat Aug 17 01:03:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2443.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2443hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14604 SH3_9: Variant SH3 do 99.8 7.5E-19 1.6E-23 77.1 5.6 49 23-71 1-49 (49)
2 PF07653 SH3_2: Variant SH3 do 99.7 1.8E-17 3.9E-22 74.4 6.0 54 20-73 1-55 (55)
3 KOG1118|consensus 99.7 2.9E-17 6.4E-22 93.5 4.1 61 17-77 305-365 (366)
4 KOG0162|consensus 99.6 3.8E-16 8.1E-21 97.2 5.0 57 17-73 1050-1106(1106)
5 KOG2070|consensus 99.6 1.6E-16 3.5E-21 95.3 2.6 55 20-74 19-73 (661)
6 PF00018 SH3_1: SH3 domain; I 99.6 1.7E-15 3.6E-20 66.2 4.9 46 22-67 1-48 (48)
7 KOG1029|consensus 99.6 1.2E-15 2.6E-20 95.3 3.6 59 15-73 1050-1108(1118)
8 smart00326 SH3 Src homology 3 99.6 3.6E-14 7.8E-19 63.6 6.6 55 19-73 3-58 (58)
9 KOG2199|consensus 99.6 6E-16 1.3E-20 90.7 0.8 56 18-73 215-270 (462)
10 KOG4225|consensus 99.5 4.5E-14 9.7E-19 83.7 6.1 56 20-75 232-287 (489)
11 cd00174 SH3 Src homology 3 dom 99.5 1E-13 2.2E-18 61.3 5.9 51 21-71 2-53 (54)
12 KOG4226|consensus 99.5 8.3E-14 1.8E-18 78.9 5.9 55 20-74 109-163 (379)
13 KOG4348|consensus 99.4 3.9E-14 8.5E-19 84.3 1.3 60 15-74 97-156 (627)
14 KOG4226|consensus 99.4 4.9E-13 1.1E-17 75.8 3.3 58 19-76 192-252 (379)
15 KOG2996|consensus 99.3 1.3E-12 2.8E-17 80.3 3.2 54 20-73 807-862 (865)
16 KOG2856|consensus 99.3 3.7E-13 8E-18 78.7 0.1 55 19-73 415-471 (472)
17 KOG4348|consensus 99.3 4.6E-12 9.9E-17 75.7 3.3 56 19-74 262-319 (627)
18 KOG4225|consensus 99.3 5.5E-12 1.2E-16 75.1 3.6 53 20-72 434-488 (489)
19 KOG4792|consensus 99.2 1.8E-12 3.9E-17 71.8 0.1 57 19-75 125-182 (293)
20 KOG2546|consensus 99.2 1.3E-11 2.9E-16 73.3 2.1 56 20-75 425-480 (483)
21 KOG1029|consensus 99.2 1.4E-11 3E-16 77.7 2.3 57 18-74 693-751 (1118)
22 KOG1264|consensus 99.1 2E-11 4.3E-16 77.5 1.6 57 19-75 775-832 (1267)
23 KOG0515|consensus 99.1 7.5E-11 1.6E-15 72.1 2.1 56 19-74 684-742 (752)
24 KOG1702|consensus 99.0 2.3E-09 5E-14 58.9 5.1 56 18-73 207-264 (264)
25 KOG3655|consensus 98.9 2.7E-10 5.8E-15 68.5 0.6 56 18-73 427-483 (484)
26 KOG1843|consensus 98.9 1.5E-09 3.3E-14 64.5 3.2 55 18-72 416-472 (473)
27 KOG3601|consensus 98.9 1.5E-09 3.3E-14 59.6 2.4 56 17-72 162-217 (222)
28 KOG3523|consensus 98.9 1.1E-10 2.5E-15 71.9 -2.2 59 17-75 607-667 (695)
29 KOG3875|consensus 98.8 3.1E-10 6.8E-15 65.4 -1.2 56 20-75 270-332 (362)
30 KOG4278|consensus 98.8 1.3E-08 2.9E-13 64.3 4.4 55 20-75 92-148 (1157)
31 KOG4773|consensus 98.7 2.8E-09 6E-14 62.3 -0.7 58 20-77 177-234 (386)
32 KOG3632|consensus 98.5 1.8E-07 3.9E-12 61.0 3.6 57 18-74 1138-1203(1335)
33 KOG3557|consensus 98.5 4.4E-08 9.6E-13 61.2 0.7 55 19-74 501-556 (721)
34 KOG4792|consensus 98.5 1E-06 2.2E-11 49.5 5.7 54 20-73 229-284 (293)
35 KOG2528|consensus 98.4 8.4E-08 1.8E-12 57.8 0.8 55 20-74 4-60 (490)
36 KOG4429|consensus 98.3 7.2E-08 1.6E-12 55.8 -1.7 54 20-73 365-418 (421)
37 KOG2222|consensus 98.2 9.6E-08 2.1E-12 58.6 -2.0 54 19-72 549-602 (848)
38 KOG3775|consensus 98.2 1.3E-06 2.8E-11 52.1 2.4 55 20-74 264-320 (482)
39 KOG1451|consensus 98.1 5.6E-06 1.2E-10 52.0 4.3 54 20-73 758-812 (812)
40 KOG0609|consensus 98.0 8E-07 1.7E-11 54.8 -0.2 54 19-72 215-280 (542)
41 KOG0197|consensus 98.0 1.5E-06 3.3E-11 53.2 0.8 56 18-73 11-69 (468)
42 KOG3725|consensus 97.9 1.6E-06 3.4E-11 49.6 -0.6 56 18-73 317-374 (375)
43 KOG3771|consensus 97.9 1.4E-05 3E-10 48.8 2.8 54 18-71 400-454 (460)
44 KOG4575|consensus 97.8 8.7E-05 1.9E-09 47.2 5.1 54 20-73 10-65 (874)
45 KOG3601|consensus 97.5 9.2E-06 2E-10 45.1 -1.8 51 21-71 3-54 (222)
46 PF08239 SH3_3: Bacterial SH3 97.4 0.0014 3.1E-08 28.8 5.1 37 35-71 17-55 (55)
47 PF14603 hSH3: Helically-exten 97.3 0.00039 8.5E-09 33.6 3.1 42 31-72 29-71 (89)
48 KOG3632|consensus 97.2 0.0017 3.6E-08 43.6 5.8 59 17-75 446-512 (1335)
49 KOG3812|consensus 97.0 0.00042 9E-09 41.4 1.4 47 21-67 61-117 (475)
50 KOG3565|consensus 96.9 0.00012 2.7E-09 46.8 -1.0 58 17-74 577-637 (640)
51 KOG0199|consensus 96.9 0.0023 5E-08 42.0 4.4 48 24-71 380-430 (1039)
52 smart00287 SH3b Bacterial SH3 96.8 0.0079 1.7E-07 27.0 4.8 37 34-70 24-61 (63)
53 PRK10884 SH3 domain-containing 96.7 0.0037 8E-08 35.0 3.8 39 35-73 48-88 (206)
54 KOG2996|consensus 96.4 0.0024 5.2E-08 40.8 1.8 45 33-77 625-672 (865)
55 KOG0040|consensus 95.3 8.7E-05 1.9E-09 51.2 -7.9 54 21-74 971-1024(2399)
56 PF06347 SH3_4: Bacterial SH3 95.1 0.11 2.4E-06 22.7 7.2 36 34-70 18-53 (55)
57 PRK13914 invasion associated s 95.1 0.079 1.7E-06 33.4 4.8 38 35-72 103-141 (481)
58 COG3103 SH3 domain protein [Si 94.3 0.19 4.1E-06 28.4 4.6 38 35-72 48-87 (205)
59 PF12913 SH3_6: SH3 domain of 92.7 0.44 9.6E-06 21.2 4.7 34 34-67 20-54 (54)
60 smart00743 Agenet Tudor-like d 92.1 0.36 7.8E-06 21.5 3.1 22 36-57 2-23 (61)
61 KOG3705|consensus 92.1 0.23 4.9E-06 31.0 3.0 53 20-72 511-565 (580)
62 PF11302 DUF3104: Protein of u 87.6 1.1 2.4E-05 21.3 2.8 24 34-57 3-32 (75)
63 KOG4384|consensus 81.7 2 4.4E-05 26.3 2.7 54 20-73 138-193 (361)
64 KOG3580|consensus 80.4 3.7 8E-05 27.4 3.6 49 20-68 506-563 (1027)
65 PRK13545 tagH teichoic acids e 66.2 12 0.00027 24.5 3.5 38 37-74 372-415 (549)
66 PF05641 Agenet: Agenet domain 63.0 14 0.00031 16.8 3.1 21 37-57 1-24 (68)
67 COG3807 Uncharacterized protei 49.0 32 0.00069 18.9 2.7 23 45-67 136-158 (171)
68 KOG1314|consensus 48.4 29 0.00062 21.8 2.8 38 31-69 330-378 (414)
69 smart00333 TUDOR Tudor domain. 42.3 31 0.00068 14.6 3.2 20 37-57 3-22 (57)
70 PF07828 PA-IL: PA-IL-like pro 34.8 64 0.0014 16.9 2.5 17 32-48 15-31 (121)
71 KOG3416|consensus 33.1 28 0.0006 18.4 1.0 15 35-49 60-74 (134)
72 PF04648 MF_alpha: Yeast matin 32.8 18 0.0004 11.1 0.2 7 35-41 4-10 (13)
73 PF13621 Cupin_8: Cupin-like d 31.7 71 0.0015 17.9 2.6 22 32-57 208-229 (251)
74 PRK02749 photosystem I reactio 28.7 51 0.0011 15.5 1.4 19 36-55 2-20 (71)
75 PRK09570 rpoH DNA-directed RNA 25.1 87 0.0019 15.1 1.9 17 34-50 49-65 (79)
76 KOG2130|consensus 25.0 1.9E+02 0.0041 18.2 4.4 24 32-59 262-285 (407)
77 CHL00125 psaE photosystem I su 24.6 76 0.0016 14.6 1.5 18 37-55 2-19 (64)
78 PF01191 RNA_pol_Rpb5_C: RNA p 23.7 62 0.0013 15.4 1.3 16 35-50 47-62 (74)
79 COG4598 HisP ABC-type histidin 23.6 1E+02 0.0022 17.9 2.2 21 32-52 24-44 (256)
80 PF14898 DUF4491: Domain of un 22.6 24 0.00052 17.6 -0.3 9 61-69 83-91 (94)
81 PF03894 XFP: D-xylulose 5-pho 22.2 1.9 4.1E-05 23.9 -4.5 36 32-67 52-89 (179)
82 CHL00141 rpl24 ribosomal prote 21.7 1.2E+02 0.0025 14.7 2.2 18 34-51 6-23 (83)
83 COG4297 Uncharacterized protei 21.4 1.6E+02 0.0034 16.1 2.9 19 27-45 79-97 (163)
No 1
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.78 E-value=7.5e-19 Score=77.12 Aligned_cols=49 Identities=51% Similarity=1.085 Sum_probs=44.5
Q ss_pred EEeccCCCCCCeeEecCCCEEEEEEeCCCCeEEEEeCCcEEEEcCCCeE
Q psy2443 23 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 71 (77)
Q Consensus 23 ~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~w~~~~~~g~~G~~P~~~~~ 71 (77)
|+|+|.+...++|+|++||++.++...+.+||.++..|+.|+||++||+
T Consensus 1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRNTGRTGLFPANYVE 49 (49)
T ss_dssp ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEETTEEEEEEGGGEE
T ss_pred CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEECCEEEEECHHhCC
Confidence 6899999999999999999999999988999999999999999999985
No 2
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=99.74 E-value=1.8e-17 Score=74.39 Aligned_cols=54 Identities=41% Similarity=0.941 Sum_probs=47.6
Q ss_pred EEEEEeccCCCCCCeeEecCCCEEEEE-EeCCCCeEEEEeCCcEEEEcCCCeEEc
Q psy2443 20 CCTALYDFEPENPGELGFKEGDTITLM-NRVDENWYEGSLNGRTGYFPVTYVQVV 73 (77)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~g~~~~v~-~~~~~~w~~~~~~g~~G~~P~~~~~~~ 73 (77)
+++|+++|.+....+|+|++||++.++ +....+||.++..|+.||||.+|++++
T Consensus 1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~~~ 55 (55)
T PF07653_consen 1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVEEI 55 (55)
T ss_dssp EEEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEEEH
T ss_pred CEEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEEEC
Confidence 478999999999999999999999999 777779999999999999999999864
No 3
>KOG1118|consensus
Probab=99.69 E-value=2.9e-17 Score=93.52 Aligned_cols=61 Identities=70% Similarity=1.357 Sum_probs=57.1
Q ss_pred CCCEEEEEeccCCCCCCeeEecCCCEEEEEEeCCCCeEEEEeCCcEEEEcCCCeEEccCCC
Q psy2443 17 KAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVPLP 77 (77)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~w~~~~~~g~~G~~P~~~~~~~~~~~ 77 (77)
..+.|+++|+|++.+..+|.|+.||+|.+....+.+||.|+..|..|+||.+||+.+.++|
T Consensus 305 ~~p~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~~g~sG~FPvnYv~vlvpl~ 365 (366)
T KOG1118|consen 305 DQPCCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEKHGESGMFPVNYVEVLVPLP 365 (366)
T ss_pred cchhheeeeccCCCCCCccCcccCceeeehhhcCcchhhheecCccCccccceeEEeccCC
Confidence 3457999999999999999999999999999999999999999999999999999998875
No 4
>KOG0162|consensus
Probab=99.64 E-value=3.8e-16 Score=97.23 Aligned_cols=57 Identities=44% Similarity=0.880 Sum_probs=53.2
Q ss_pred CCCEEEEEeccCCCCCCeeEecCCCEEEEEEeCCCCeEEEEeCCcEEEEcCCCeEEc
Q psy2443 17 KAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 73 (77)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~w~~~~~~g~~G~~P~~~~~~~ 73 (77)
..+.|.|+|+|.+++.+||+|++||+|.++.++..|||.++..|++||||.+|+.++
T Consensus 1050 k~p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk~~~keG~~P~~Yv~~~ 1106 (1106)
T KOG0162|consen 1050 KNPVCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGKLNGKEGLFPGNYVTEY 1106 (1106)
T ss_pred CCcceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhccCCccccccccccccC
Confidence 346899999999999999999999999999999999999999999999999999763
No 5
>KOG2070|consensus
Probab=99.63 E-value=1.6e-16 Score=95.26 Aligned_cols=55 Identities=42% Similarity=0.852 Sum_probs=52.1
Q ss_pred EEEEEeccCCCCCCeeEecCCCEEEEEEeCCCCeEEEEeCCcEEEEcCCCeEEcc
Q psy2443 20 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVV 74 (77)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~w~~~~~~g~~G~~P~~~~~~~~ 74 (77)
.++|-|.|.+.+.++|+|.+||+|.|.+..+.|||.|+..|+.||||++||.++.
T Consensus 19 vvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGTlng~TGWFPsnYV~eik 73 (661)
T KOG2070|consen 19 VVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGTLNGRTGWFPSNYVREIK 73 (661)
T ss_pred EEEEEeecccCCCceeccccCCEEEEEEeccCcceeccccCccCccchHHHHHHh
Confidence 5899999999999999999999999999999999999999999999999998764
No 6
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=99.62 E-value=1.7e-15 Score=66.23 Aligned_cols=46 Identities=41% Similarity=0.954 Sum_probs=41.2
Q ss_pred EEEeccCCCCCCeeEecCCCEEEEEEeCCCCeEEEEeC--CcEEEEcC
Q psy2443 22 TALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLN--GRTGYFPV 67 (77)
Q Consensus 22 ~~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~w~~~~~~--g~~G~~P~ 67 (77)
+|+|+|.+...++|+|.+||.+.|+...+.+||.++.. ++.|+||+
T Consensus 1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~ 48 (48)
T PF00018_consen 1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS 48 (48)
T ss_dssp EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence 58999999999999999999999999998899999943 68999995
No 7
>KOG1029|consensus
Probab=99.58 E-value=1.2e-15 Score=95.33 Aligned_cols=59 Identities=39% Similarity=0.793 Sum_probs=53.4
Q ss_pred CCCCCEEEEEeccCCCCCCeeEecCCCEEEEEEeCCCCeEEEEeCCcEEEEcCCCeEEc
Q psy2443 15 VNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 73 (77)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~w~~~~~~g~~G~~P~~~~~~~ 73 (77)
......+.++|||.+++.++|+|.+||+|.|+.+++..||.|...|..|+||+|||..+
T Consensus 1050 ~~~v~qviamYdY~AqndDELsF~kgdiI~VlnkdepeWW~Ge~ng~sGLFPSNYV~k~ 1108 (1118)
T KOG1029|consen 1050 TRPVCQVIAMYDYEAQNDDELSFKKGDIINVLNKDEPEWWSGERNGKSGLFPSNYVQKQ 1108 (1118)
T ss_pred CCccceeEEeeccccCCcccccccCCCEEEecCCCChhhhcccccCccccCcccccccc
Confidence 33345688999999999999999999999999999999999999999999999999654
No 8
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=99.56 E-value=3.6e-14 Score=63.58 Aligned_cols=55 Identities=44% Similarity=1.009 Sum_probs=49.5
Q ss_pred CEEEEEeccCCCCCCeeEecCCCEEEEEEeCCCCeEEEEeC-CcEEEEcCCCeEEc
Q psy2443 19 PCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLN-GRTGYFPVTYVQVV 73 (77)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~w~~~~~~-g~~G~~P~~~~~~~ 73 (77)
..++++++|.+....+|+|.+||.+.++.....+||.++.. ++.|+||.+|++.+
T Consensus 3 ~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~~ 58 (58)
T smart00326 3 PQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEEI 58 (58)
T ss_pred cEEEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEEC
Confidence 35889999999999999999999999999888899999955 99999999998753
No 9
>KOG2199|consensus
Probab=99.56 E-value=6e-16 Score=90.67 Aligned_cols=56 Identities=39% Similarity=0.737 Sum_probs=52.3
Q ss_pred CCEEEEEeccCCCCCCeeEecCCCEEEEEEeCCCCeEEEEeCCcEEEEcCCCeEEc
Q psy2443 18 APCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 73 (77)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~w~~~~~~g~~G~~P~~~~~~~ 73 (77)
...++|+|||++.+..||+|+.||+|.|++..+..||.|...+..|+||++||...
T Consensus 215 ~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~~~~~GlFPsnfVT~~ 270 (462)
T KOG2199|consen 215 VRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGENHRGIGLFPSNFVTAD 270 (462)
T ss_pred chhhhhhhcccccCCCccceecCcEEEEcccCCcchhccccCCcccccchhhhhhh
Confidence 44699999999999999999999999999999999999999999999999999763
No 10
>KOG4225|consensus
Probab=99.52 E-value=4.5e-14 Score=83.69 Aligned_cols=56 Identities=46% Similarity=1.048 Sum_probs=53.4
Q ss_pred EEEEEeccCCCCCCeeEecCCCEEEEEEeCCCCeEEEEeCCcEEEEcCCCeEEccC
Q psy2443 20 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVP 75 (77)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~w~~~~~~g~~G~~P~~~~~~~~~ 75 (77)
.++|+|+|.++...||.|.+||+|.|+.+.+..|+.|+..|+.|+||++||+.+..
T Consensus 232 ~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~~~ 287 (489)
T KOG4225|consen 232 AARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEILTP 287 (489)
T ss_pred hhhheeccccCCccccccCCCCEEEEEeeccCceeeeeecceecceechheeecCc
Confidence 48999999999999999999999999999999999999999999999999998865
No 11
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=99.52 E-value=1e-13 Score=61.32 Aligned_cols=51 Identities=45% Similarity=1.032 Sum_probs=46.3
Q ss_pred EEEEeccCCCCCCeeEecCCCEEEEEEeCCCCeEEEEeCC-cEEEEcCCCeE
Q psy2443 21 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNG-RTGYFPVTYVQ 71 (77)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~w~~~~~~g-~~G~~P~~~~~ 71 (77)
++++++|.+....+|+|.+||.+.++.....+||.++..+ +.||||.+|++
T Consensus 2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~ 53 (54)
T cd00174 2 VRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVE 53 (54)
T ss_pred EEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCc
Confidence 6789999999999999999999999998778999999655 99999999875
No 12
>KOG4226|consensus
Probab=99.50 E-value=8.3e-14 Score=78.89 Aligned_cols=55 Identities=31% Similarity=0.729 Sum_probs=51.5
Q ss_pred EEEEEeccCCCCCCeeEecCCCEEEEEEeCCCCeEEEEeCCcEEEEcCCCeEEcc
Q psy2443 20 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVV 74 (77)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~w~~~~~~g~~G~~P~~~~~~~~ 74 (77)
.+.+.|.|.+...+||++.+|..+.|+++...|||+|...|+.||||++|+.+..
T Consensus 109 ~AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~~ng~VGWFPSNYv~E~~ 163 (379)
T KOG4226|consen 109 PAVVKFNYVAEREDELSLTKGTRVTVMEKSSDGWWRGSYNGQVGWFPSNYVTEEV 163 (379)
T ss_pred ceEEEEeeccccccccccccCcEEEEEEeccCcceecccCCeeccccccceehhc
Confidence 4778899999999999999999999999999999999999999999999998754
No 13
>KOG4348|consensus
Probab=99.42 E-value=3.9e-14 Score=84.33 Aligned_cols=60 Identities=37% Similarity=0.816 Sum_probs=55.2
Q ss_pred CCCCCEEEEEeccCCCCCCeeEecCCCEEEEEEeCCCCeEEEEeCCcEEEEcCCCeEEcc
Q psy2443 15 VNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVV 74 (77)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~w~~~~~~g~~G~~P~~~~~~~~ 74 (77)
......|++.|.|..++.++|.|+.||+|.++.+...|||.|...|..|+||+|++.++.
T Consensus 97 q~~~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~Lngk~GmFPsNFVkel~ 156 (627)
T KOG4348|consen 97 QPQARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWKGKLNGKVGMFPSNFVKELP 156 (627)
T ss_pred CccceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhhceecCcccccchhhceecC
Confidence 344567999999999999999999999999999999999999999999999999998864
No 14
>KOG4226|consensus
Probab=99.37 E-value=4.9e-13 Score=75.81 Aligned_cols=58 Identities=29% Similarity=0.664 Sum_probs=52.1
Q ss_pred CEEEEEeccCCCCCCeeEecCCCEEEEEEeC--CCCeEEEE-eCCcEEEEcCCCeEEccCC
Q psy2443 19 PCCTALYDFEPENPGELGFKEGDTITLMNRV--DENWYEGS-LNGRTGYFPVTYVQVVVPL 76 (77)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~--~~~w~~~~-~~g~~G~~P~~~~~~~~~~ 76 (77)
..+.++|.|.+.+..||+|++||.+.|+++- ++.||.++ ..|+.|++|.+|+..+.+-
T Consensus 192 ~vVvaLYsFsssndeELsFeKGerleivd~Pe~DPdWwkarn~~G~vGLVPrNYv~vl~d~ 252 (379)
T KOG4226|consen 192 HVVVALYSFSSSNDEELSFEKGERLEIVDKPENDPDWWKARNARGQVGLVPRNYVVVLSDG 252 (379)
T ss_pred EEEEEEecccCCChhhcccccCceeEeccCCCCCchHHhhcccCCccceeecceEEEeccC
Confidence 3578999999999999999999999999864 66899999 8999999999999998764
No 15
>KOG2996|consensus
Probab=99.32 E-value=1.3e-12 Score=80.31 Aligned_cols=54 Identities=43% Similarity=0.884 Sum_probs=48.1
Q ss_pred EEEEEeccCCCCCCeeEecCCCEEEEEEeC--CCCeEEEEeCCcEEEEcCCCeEEc
Q psy2443 20 CCTALYDFEPENPGELGFKEGDTITLMNRV--DENWYEGSLNGRTGYFPVTYVQVV 73 (77)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~--~~~w~~~~~~g~~G~~P~~~~~~~ 73 (77)
.+++-|||.+.+-.+|+|+.||++.++.+. +.|||+|+..|+.||||++||++-
T Consensus 807 ~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevngrvGwFPstYVee~ 862 (865)
T KOG2996|consen 807 TAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNGRVGWFPSTYVEED 862 (865)
T ss_pred eeeeccccCCCchhhcccccCCEEEEehhccccCceecceecCccccccccccccc
Confidence 466778898889999999999999999865 569999999999999999999864
No 16
>KOG2856|consensus
Probab=99.30 E-value=3.7e-13 Score=78.69 Aligned_cols=55 Identities=35% Similarity=0.794 Sum_probs=48.8
Q ss_pred CEEEEEeccCCCCCCeeEecCCCEEEEEEeC-CCCeEEEEeC-CcEEEEcCCCeEEc
Q psy2443 19 PCCTALYDFEPENPGELGFKEGDTITLMNRV-DENWYEGSLN-GRTGYFPVTYVQVV 73 (77)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~-~~~w~~~~~~-g~~G~~P~~~~~~~ 73 (77)
..+++||||.++..++|+|+.||.+..+.+. ..||..|+.. |+.|++|++||+.+
T Consensus 415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~ 471 (472)
T KOG2856|consen 415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI 471 (472)
T ss_pred eeEEeeeccCcccccchhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence 3589999999999999999999999887765 5699999965 99999999999864
No 17
>KOG4348|consensus
Probab=99.26 E-value=4.6e-12 Score=75.73 Aligned_cols=56 Identities=41% Similarity=0.892 Sum_probs=50.6
Q ss_pred CEEEEEeccCCCCCCeeEecCCCEEEEEEeC--CCCeEEEEeCCcEEEEcCCCeEEcc
Q psy2443 19 PCCTALYDFEPENPGELGFKEGDTITLMNRV--DENWYEGSLNGRTGYFPVTYVQVVV 74 (77)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~--~~~w~~~~~~g~~G~~P~~~~~~~~ 74 (77)
-+|+++|-|++++.++|.|+.||++.++.+. +-|||.|...|+.|.||-|+++.+.
T Consensus 262 eycrv~F~Ye~qndDELt~KEgdil~lItK~cgdaGWweGELnGk~GvFPDNFv~lv~ 319 (627)
T KOG4348|consen 262 EYCRVKFVYEPQNDDELTLKEGDILILITKNCGDAGWWEGELNGKKGVFPDNFVELVQ 319 (627)
T ss_pred hheeeeeeecCCCccceeeccccEEEEecccccccceeeeeecCccccCCchhhhhcC
Confidence 3799999999999999999999999888875 4589999999999999999997664
No 18
>KOG4225|consensus
Probab=99.26 E-value=5.5e-12 Score=75.05 Aligned_cols=53 Identities=40% Similarity=0.847 Sum_probs=49.8
Q ss_pred EEEEEeccCCCCCCeeEecCCCEEEEEEeCCCCeEEEE--eCCcEEEEcCCCeEE
Q psy2443 20 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS--LNGRTGYFPVTYVQV 72 (77)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~w~~~~--~~g~~G~~P~~~~~~ 72 (77)
.++|+|.|..++.++|.|..||+|.|+++++.||+.|. +.|..|.||.+||+.
T Consensus 434 ~yrAly~Y~pqnedeLEl~egDii~VmeKcddgWfvGts~rtg~fGtFPgnyV~~ 488 (489)
T KOG4225|consen 434 KYRALYSYRPQNEDELELREGDIIDVMEKCDDGWFVGTSRRTGKFGTFPGNYVKR 488 (489)
T ss_pred cceeccccCCCCchhheeccCCEEeeeecccCcceeccceecccccccCcccccc
Confidence 37999999999999999999999999999999999994 889999999999975
No 19
>KOG4792|consensus
Probab=99.22 E-value=1.8e-12 Score=71.84 Aligned_cols=57 Identities=30% Similarity=0.723 Sum_probs=51.8
Q ss_pred CEEEEEeccCCCCCCeeEecCCCEEEEEEeCCCCeEEEE-eCCcEEEEcCCCeEEccC
Q psy2443 19 PCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS-LNGRTGYFPVTYVQVVVP 75 (77)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~w~~~~-~~g~~G~~P~~~~~~~~~ 75 (77)
-.++++|+|.+.....|.|++|+++.|+++.+..||.++ ..|+.|++|..||+...+
T Consensus 125 ~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~~~~ 182 (293)
T KOG4792|consen 125 EYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEKYRP 182 (293)
T ss_pred hheeeeeccCCCccccCCcccCcEEEEecCcHHHhhhhhccCCcccceechHHHhhhh
Confidence 357889999999999999999999999999999999999 889999999999987543
No 20
>KOG2546|consensus
Probab=99.17 E-value=1.3e-11 Score=73.27 Aligned_cols=56 Identities=36% Similarity=0.776 Sum_probs=52.3
Q ss_pred EEEEEeccCCCCCCeeEecCCCEEEEEEeCCCCeEEEEeCCcEEEEcCCCeEEccC
Q psy2443 20 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVP 75 (77)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~w~~~~~~g~~G~~P~~~~~~~~~ 75 (77)
.++++|||.+...++|+|..|-+|.++++.+++||++...|..|+||.+||+.+.+
T Consensus 425 kVv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~~~VTglFpgnyve~~~~ 480 (483)
T KOG2546|consen 425 KVVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQDGVTGLFPGNYVEPLKA 480 (483)
T ss_pred HHHhhcccccccccccccccccEEEEEEecCCcchhheecCcceeccCcccccccc
Confidence 46789999999999999999999999999999999999999999999999988754
No 21
>KOG1029|consensus
Probab=99.17 E-value=1.4e-11 Score=77.67 Aligned_cols=57 Identities=35% Similarity=0.744 Sum_probs=50.9
Q ss_pred CCEEEEEeccCCCCCCeeEecCCCEEEEEEeC--CCCeEEEEeCCcEEEEcCCCeEEcc
Q psy2443 18 APCCTALYDFEPENPGELGFKEGDTITLMNRV--DENWYEGSLNGRTGYFPVTYVQVVV 74 (77)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~--~~~w~~~~~~g~~G~~P~~~~~~~~ 74 (77)
...|+|+|.|++.+.++++|..||+|.|-.+. ..||..|...|+.||||.+||+.|.
T Consensus 693 ~vkyrAly~FeaRs~dEisf~pGDII~V~esq~aEPGWlaGel~gktGWFPenyvEki~ 751 (1118)
T KOG1029|consen 693 TVKYRALYPFEARSHDEISFEPGDIIIVFESQAAEPGWLAGELRGKTGWFPENYVEKIP 751 (1118)
T ss_pred eEEEeeecccccCCcccccccCCCEEEEehhccCCcccccceeccccCcCcHHHHhhcc
Confidence 34699999999999999999999999887654 6799999999999999999998774
No 22
>KOG1264|consensus
Probab=99.12 E-value=2e-11 Score=77.53 Aligned_cols=57 Identities=32% Similarity=0.723 Sum_probs=51.6
Q ss_pred CEEEEEeccCCCCCCeeEecCCCEEEEEEeCCCCeEEEEeCCc-EEEEcCCCeEEccC
Q psy2443 19 PCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGR-TGYFPVTYVQVVVP 75 (77)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~w~~~~~~g~-~G~~P~~~~~~~~~ 75 (77)
..++|+|+|.+...+||+|-++-+|..+++.+.+||.|...|+ .+|||++||++|..
T Consensus 775 vt~kAL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~~ 832 (1267)
T KOG1264|consen 775 VTVKALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEIST 832 (1267)
T ss_pred hhhhhhhccccCCcccccccccceeEeeeccCCceeecccccceeeeccHHHhhhhcc
Confidence 3589999999999999999999999999999889999998764 69999999998753
No 23
>KOG0515|consensus
Probab=99.06 E-value=7.5e-11 Score=72.11 Aligned_cols=56 Identities=36% Similarity=0.723 Sum_probs=49.5
Q ss_pred CEEEEEeccCCCCCCeeEecCCCEEEEEEeC---CCCeEEEEeCCcEEEEcCCCeEEcc
Q psy2443 19 PCCTALYDFEPENPGELGFKEGDTITLMNRV---DENWYEGSLNGRTGYFPVTYVQVVV 74 (77)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~---~~~w~~~~~~g~~G~~P~~~~~~~~ 74 (77)
..+.|+|||+++..+||+|..||.+.|++++ +..||.++..|++|+||.+|+..+.
T Consensus 684 G~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnylgLyP 742 (752)
T KOG0515|consen 684 GVVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYLGLYP 742 (752)
T ss_pred ceeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhhhcCc
Confidence 3588999999999999999999999999974 3469999999999999999987654
No 24
>KOG1702|consensus
Probab=98.96 E-value=2.3e-09 Score=58.86 Aligned_cols=56 Identities=30% Similarity=0.713 Sum_probs=50.0
Q ss_pred CCEEEEEeccCCCCCCeeEecCCCEEEEEEeCCCCeEEEE--eCCcEEEEcCCCeEEc
Q psy2443 18 APCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS--LNGRTGYFPVTYVQVV 73 (77)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~w~~~~--~~g~~G~~P~~~~~~~ 73 (77)
....+++|||.++..++++|.-||.|......+.||..+. ..|..|..|++|++.+
T Consensus 207 gktyra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~v 264 (264)
T KOG1702|consen 207 GKTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEFV 264 (264)
T ss_pred CccchhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheeeC
Confidence 4568999999999999999999999988888888988887 7899999999999753
No 25
>KOG3655|consensus
Probab=98.92 E-value=2.7e-10 Score=68.50 Aligned_cols=56 Identities=38% Similarity=0.857 Sum_probs=51.1
Q ss_pred CCEEEEEeccCCCCCCeeEecCCCEEEEEEeCCCCeEEEE-eCCcEEEEcCCCeEEc
Q psy2443 18 APCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS-LNGRTGYFPVTYVQVV 73 (77)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~w~~~~-~~g~~G~~P~~~~~~~ 73 (77)
...++|+|+|++.+..+++|..++.|.++...+.|||.|. -+|..|+||+|||+.+
T Consensus 427 ~q~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li 483 (484)
T KOG3655|consen 427 PQTARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELI 483 (484)
T ss_pred CCCccccccccccCCcccccCCccccccccccCCccccccCCCCCcCcccccccccC
Confidence 3468999999999999999999999999999899999999 7889999999999765
No 26
>KOG1843|consensus
Probab=98.90 E-value=1.5e-09 Score=64.51 Aligned_cols=55 Identities=42% Similarity=0.895 Sum_probs=49.2
Q ss_pred CCEEEEEeccCCCCCCeeEecCCCEEEEEEeC--CCCeEEEEeCCcEEEEcCCCeEE
Q psy2443 18 APCCTALYDFEPENPGELGFKEGDTITLMNRV--DENWYEGSLNGRTGYFPVTYVQV 72 (77)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~--~~~w~~~~~~g~~G~~P~~~~~~ 72 (77)
...+.++|+|.+.....+.|++||+|.++.+. ...||.++.++++|+||++|++.
T Consensus 416 ~n~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPanyv~~ 472 (473)
T KOG1843|consen 416 PNIATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPANYVSL 472 (473)
T ss_pred cceeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhccccccccccceecc
Confidence 33689999999999999999999999998876 34799999999999999999864
No 27
>KOG3601|consensus
Probab=98.87 E-value=1.5e-09 Score=59.61 Aligned_cols=56 Identities=39% Similarity=0.791 Sum_probs=51.3
Q ss_pred CCCEEEEEeccCCCCCCeeEecCCCEEEEEEeCCCCeEEEEeCCcEEEEcCCCeEE
Q psy2443 17 KAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQV 72 (77)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~w~~~~~~g~~G~~P~~~~~~ 72 (77)
...+..++|+|......++.+..|+.+.++...+..||.|...|+.|+||++|+..
T Consensus 162 ~~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~lg~agiFpagyv~p 217 (222)
T KOG3601|consen 162 TNYYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSKLGRAGIFPAGYVAP 217 (222)
T ss_pred cchhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhccccCceeeecCccccc
Confidence 34568899999999999999999999999999999999999999999999999864
No 28
>KOG3523|consensus
Probab=98.86 E-value=1.1e-10 Score=71.89 Aligned_cols=59 Identities=24% Similarity=0.675 Sum_probs=53.3
Q ss_pred CCCEEEEEeccCCCCCCeeEecCCCEEEEEEeCCCCeEEEE--eCCcEEEEcCCCeEEccC
Q psy2443 17 KAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS--LNGRTGYFPVTYVQVVVP 75 (77)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~w~~~~--~~g~~G~~P~~~~~~~~~ 75 (77)
.++++.+...|.+..+++|+++.+|++.|+++...||+.|. .+|..||||.+|+++|..
T Consensus 607 dcpQv~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~ 667 (695)
T KOG3523|consen 607 DCPQVQCVHSYKAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEITN 667 (695)
T ss_pred CCChhheeeccccCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHhcC
Confidence 35678888999999999999999999999999999999998 689999999999988754
No 29
>KOG3875|consensus
Probab=98.82 E-value=3.1e-10 Score=65.38 Aligned_cols=56 Identities=32% Similarity=0.577 Sum_probs=46.7
Q ss_pred EEEEEeccCCCCCCeeEecCCCEEEEEEeC-----CCCeEEEE-e-CCcEEEEcCCCeEEccC
Q psy2443 20 CCTALYDFEPENPGELGFKEGDTITLMNRV-----DENWYEGS-L-NGRTGYFPVTYVQVVVP 75 (77)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~-----~~~w~~~~-~-~g~~G~~P~~~~~~~~~ 75 (77)
.|+|+|||.+.++.|++|++||.+.|..++ +..||..+ . .+..|+||.+||+.+..
T Consensus 270 ~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~r 332 (362)
T KOG3875|consen 270 FARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGR 332 (362)
T ss_pred HHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhc
Confidence 589999999999999999999999988764 23478776 4 56789999999987753
No 30
>KOG4278|consensus
Probab=98.76 E-value=1.3e-08 Score=64.26 Aligned_cols=55 Identities=27% Similarity=0.608 Sum_probs=47.1
Q ss_pred EEEEEeccCCCCCCeeEecCCCEEEEEEeCCC-CeEEEE-eCCcEEEEcCCCeEEccC
Q psy2443 20 CCTALYDFEPENPGELGFKEGDTITLMNRVDE-NWYEGS-LNGRTGYFPVTYVQVVVP 75 (77)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~~~-~w~~~~-~~g~~G~~P~~~~~~~~~ 75 (77)
.++|+|||.+.....|++.+|+.+.|+.-..+ .|..++ ..|+ ||+|++|+..+..
T Consensus 92 LFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartKNGq-GWVPSNyItPvNS 148 (1157)
T KOG4278|consen 92 LFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQ-GWVPSNYITPVNS 148 (1157)
T ss_pred eeEeeeeeeccccceeeeecCceEEEeeecCCCcceeecccCCC-ccccccccccccc
Confidence 58999999999999999999999999998744 588888 4555 9999999987643
No 31
>KOG4773|consensus
Probab=98.66 E-value=2.8e-09 Score=62.30 Aligned_cols=58 Identities=31% Similarity=0.608 Sum_probs=52.7
Q ss_pred EEEEEeccCCCCCCeeEecCCCEEEEEEeCCCCeEEEEeCCcEEEEcCCCeEEccCCC
Q psy2443 20 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVPLP 77 (77)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~w~~~~~~g~~G~~P~~~~~~~~~~~ 77 (77)
...++++|.+....||.|..|+++.++.+++.+||.|+..+..||+|.+|+..+.++|
T Consensus 177 ~~~a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk~R~~~g~yp~sF~~~ld~fp 234 (386)
T KOG4773|consen 177 RAEASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGKVRGLTGYYPDSFVKQLDDFP 234 (386)
T ss_pred HHHhhccCCCCccceeeeehhhHHHHHhhcccceeeeeeccccccccHHhhhhhccCc
Confidence 4677899999999999999999999999999999999999999999999998776554
No 32
>KOG3632|consensus
Probab=98.48 E-value=1.8e-07 Score=61.00 Aligned_cols=57 Identities=35% Similarity=0.652 Sum_probs=48.0
Q ss_pred CCEEEEEeccCCC--------CCCeeEecCCCEEEEEEeC-CCCeEEEEeCCcEEEEcCCCeEEcc
Q psy2443 18 APCCTALYDFEPE--------NPGELGFKEGDTITLMNRV-DENWYEGSLNGRTGYFPVTYVQVVV 74 (77)
Q Consensus 18 ~~~~~~~~~~~~~--------~~~~l~~~~g~~~~v~~~~-~~~w~~~~~~g~~G~~P~~~~~~~~ 74 (77)
...++|+|||+.. ...||.|++|++|.|+.+. ..|++.++..|+.|+||.|+|.++.
T Consensus 1138 arifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~ngr~GlIPcNmvae~~ 1203 (1335)
T KOG3632|consen 1138 ARIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELNGRRGLIPCNMVAEQP 1203 (1335)
T ss_pred ceeeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeeccccccccccccccccccc
Confidence 3468999999863 2458999999999998854 5689999999999999999998863
No 33
>KOG3557|consensus
Probab=98.46 E-value=4.4e-08 Score=61.16 Aligned_cols=55 Identities=27% Similarity=0.643 Sum_probs=48.3
Q ss_pred CEEEEEeccCCCCCCeeEecCCCEEEEEEeCCCCeEEEE-eCCcEEEEcCCCeEEcc
Q psy2443 19 PCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS-LNGRTGYFPVTYVQVVV 74 (77)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~w~~~~-~~g~~G~~P~~~~~~~~ 74 (77)
..+.++|||.+.+..+|++.+||++.|+.+ ...||.++ ..|+.|++|.+.+..+.
T Consensus 501 k~~~~~Ydf~arNs~ELsV~k~E~LEvl~d-~R~WW~~kn~~G~~GyvP~nIL~~~~ 556 (721)
T KOG3557|consen 501 KWVLVLYDFQARNSSELSVKKGEVLEVLDD-GRKWWKVKNGHGRAGYVPSNILAPLQ 556 (721)
T ss_pred eeeeeehhhhcccchhhhhhhhhhhhhhhc-cccceeccCccCCCCCcchhhhccCC
Confidence 368889999999999999999999998887 45799998 78999999999887664
No 34
>KOG4792|consensus
Probab=98.45 E-value=1e-06 Score=49.48 Aligned_cols=54 Identities=26% Similarity=0.481 Sum_probs=45.9
Q ss_pred EEEEEeccCCC--CCCeeEecCCCEEEEEEeCCCCeEEEEeCCcEEEEcCCCeEEc
Q psy2443 20 CCTALYDFEPE--NPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 73 (77)
Q Consensus 20 ~~~~~~~~~~~--~~~~l~~~~g~~~~v~~~~~~~w~~~~~~g~~G~~P~~~~~~~ 73 (77)
+++++++-... +...|.+++||++.|.+...+|.|.++++|+.|.||..||+.+
T Consensus 229 ~Arv~q~RVPnAYDkTaL~levGdiVkVTk~ninGqwegElnGk~G~fPfThvrf~ 284 (293)
T KOG4792|consen 229 YARVIQKRVPNAYDKTALALEVGDIVKVTKKNINGQWEGELNGKIGHFPFTHVRFT 284 (293)
T ss_pred heeeehhcCCCccChhhhhhhcCcEEEEEeeccCceeeeeecCccccccceeEEee
Confidence 57777765543 4567999999999999999999999999999999999999754
No 35
>KOG2528|consensus
Probab=98.40 E-value=8.4e-08 Score=57.82 Aligned_cols=55 Identities=38% Similarity=0.726 Sum_probs=49.3
Q ss_pred EEEEEeccCCCCCCeeEecCCCEEEEEEeC-CCCeEEEE-eCCcEEEEcCCCeEEcc
Q psy2443 20 CCTALYDFEPENPGELGFKEGDTITLMNRV-DENWYEGS-LNGRTGYFPVTYVQVVV 74 (77)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~-~~~w~~~~-~~g~~G~~P~~~~~~~~ 74 (77)
..+++|+|...+..+++...++++.+..+. ..+||.+. ..|..|.||++|++.++
T Consensus 4 k~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~ 60 (490)
T KOG2528|consen 4 KARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVTR 60 (490)
T ss_pred chhhhcchhhcccccccccccceeeecCcccccccccCCCccCccCCCcccceeeec
Confidence 478999999999999999999999988876 56899998 78999999999999875
No 36
>KOG4429|consensus
Probab=98.25 E-value=7.2e-08 Score=55.76 Aligned_cols=54 Identities=24% Similarity=0.327 Sum_probs=48.4
Q ss_pred EEEEEeccCCCCCCeeEecCCCEEEEEEeCCCCeEEEEeCCcEEEEcCCCeEEc
Q psy2443 20 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 73 (77)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~w~~~~~~g~~G~~P~~~~~~~ 73 (77)
.|.++|+|++...++|...+|++..+-.....+||.|+..|..|.|++.++++.
T Consensus 365 lcdafYSfqarqddel~~e~gditif~Ekkeeg~~f~rl~gd~~hf~Aa~iEea 418 (421)
T KOG4429|consen 365 LCDAFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCRLLGDFEHFHAAEIEEA 418 (421)
T ss_pred HhhhhhccccccccccCCcccceeeecCcccCCCceeeeccccCCCcHHHHHHh
Confidence 588999999999999999999998777777889999999999999999888653
No 37
>KOG2222|consensus
Probab=98.20 E-value=9.6e-08 Score=58.61 Aligned_cols=54 Identities=41% Similarity=0.778 Sum_probs=48.4
Q ss_pred CEEEEEeccCCCCCCeeEecCCCEEEEEEeCCCCeEEEEeCCcEEEEcCCCeEE
Q psy2443 19 PCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQV 72 (77)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~w~~~~~~g~~G~~P~~~~~~ 72 (77)
..++++.||.....++|.|+++|++.++.+-+.-.|.|+.+|-+||||+-+|+.
T Consensus 549 krakal~df~r~dddelgfrkndiitiisekdehcwvgelnglrgwfpakfvel 602 (848)
T KOG2222|consen 549 KRAKALHDFAREDDDELGFRKNDIITIISEKDEHCWVGELNGLRGWFPAKFVEL 602 (848)
T ss_pred HHHHHHhhhhhccccccccccccEEEEeecCCcceeeeccccccccchHHHHHH
Confidence 357889999999999999999999999998888899999999999999877753
No 38
>KOG3775|consensus
Probab=98.18 E-value=1.3e-06 Score=52.05 Aligned_cols=55 Identities=33% Similarity=0.680 Sum_probs=47.9
Q ss_pred EEEEEeccCCCCCCeeEecCCCEEEEEEeCCCCeEEEE--eCCcEEEEcCCCeEEcc
Q psy2443 20 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS--LNGRTGYFPVTYVQVVV 74 (77)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~w~~~~--~~g~~G~~P~~~~~~~~ 74 (77)
.-++++.|.....+||.|.+||.+.|....+..|..|. ..|+.|+||+.|+.++.
T Consensus 264 THR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd 320 (482)
T KOG3775|consen 264 THRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVD 320 (482)
T ss_pred hhhhhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecC
Confidence 35677889999999999999999988888788899987 78999999999987763
No 39
>KOG1451|consensus
Probab=98.12 E-value=5.6e-06 Score=52.00 Aligned_cols=54 Identities=31% Similarity=0.655 Sum_probs=46.6
Q ss_pred EEEEEeccCCCCCCeeEecCCCEEEEEE-eCCCCeEEEEeCCcEEEEcCCCeEEc
Q psy2443 20 CCTALYDFEPENPGELGFKEGDTITLMN-RVDENWYEGSLNGRTGYFPVTYVQVV 73 (77)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~g~~~~v~~-~~~~~w~~~~~~g~~G~~P~~~~~~~ 73 (77)
.+.++|...+....+++|..|.++.-.. ....||..|+..|+.|++|.+||+.+
T Consensus 758 k~k~lyAc~a~h~selsf~~gt~f~nv~~S~e~Gwl~GtLnGktglip~nyve~l 812 (812)
T KOG1451|consen 758 RVKTLYACTADHHSELSFEPGTIFTNVYESNEDGWLVGTLNGKTGLIPSNYVEPL 812 (812)
T ss_pred cccceeccCCCCcccccccCcceeeeecccCCCCceeeecCCCcccCcccccCcC
Confidence 5777888888889999999999987655 45779999999999999999999754
No 40
>KOG0609|consensus
Probab=98.05 E-value=8e-07 Score=54.75 Aligned_cols=54 Identities=28% Similarity=0.626 Sum_probs=43.9
Q ss_pred CEEEEEeccCCCCCC-------eeEecCCCEEEEEEeCCCCeEEEEeC-----CcEEEEcCCCeEE
Q psy2443 19 PCCTALYDFEPENPG-------ELGFKEGDTITLMNRVDENWYEGSLN-----GRTGYFPVTYVQV 72 (77)
Q Consensus 19 ~~~~~~~~~~~~~~~-------~l~~~~g~~~~v~~~~~~~w~~~~~~-----g~~G~~P~~~~~~ 72 (77)
.+++|+|||+..... .|.|++||++.|+.+.+..||+++.. +..|.+|+..+++
T Consensus 215 ~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qe 280 (542)
T KOG0609|consen 215 VFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQE 280 (542)
T ss_pred eeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHH
Confidence 578999999976543 58999999999999999999999843 3568999876543
No 41
>KOG0197|consensus
Probab=98.04 E-value=1.5e-06 Score=53.16 Aligned_cols=56 Identities=30% Similarity=0.746 Sum_probs=48.3
Q ss_pred CCEEEEEeccCCCCCCeeEecCCCE-EEEEEeCCCCeEEEE--eCCcEEEEcCCCeEEc
Q psy2443 18 APCCTALYDFEPENPGELGFKEGDT-ITLMNRVDENWYEGS--LNGRTGYFPVTYVQVV 73 (77)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~~g~~-~~v~~~~~~~w~~~~--~~g~~G~~P~~~~~~~ 73 (77)
...+.++|+|.+....+|+|.+|++ ..++...+..||..+ ..+..|++|.||+...
T Consensus 11 ~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~ 69 (468)
T KOG0197|consen 11 ETIVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARN 69 (468)
T ss_pred cceEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeecc
Confidence 3468999999999999999999999 777777778899987 4688899999999863
No 42
>KOG3725|consensus
Probab=97.91 E-value=1.6e-06 Score=49.59 Aligned_cols=56 Identities=27% Similarity=0.558 Sum_probs=48.6
Q ss_pred CCEEEEEeccCCCCCCeeEecCCCEEEEEEeC--CCCeEEEEeCCcEEEEcCCCeEEc
Q psy2443 18 APCCTALYDFEPENPGELGFKEGDTITLMNRV--DENWYEGSLNGRTGYFPVTYVQVV 73 (77)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~--~~~w~~~~~~g~~G~~P~~~~~~~ 73 (77)
...++++|||++....+|++-.+++|.|..-. +.+|..++..++.|-+|..|++.+
T Consensus 317 trkArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgErGnkkGKvPvtYlELL 374 (375)
T KOG3725|consen 317 TRKARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGERGNKKGKVPVTYLELL 374 (375)
T ss_pred ccceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhhhhcCCCCCcchhHHHhc
Confidence 44689999999999999999999999887754 567999999999999999998654
No 43
>KOG3771|consensus
Probab=97.87 E-value=1.4e-05 Score=48.76 Aligned_cols=54 Identities=26% Similarity=0.236 Sum_probs=43.1
Q ss_pred CCEEEEEeccCCCCCCeeEecCCCEEEEEEeC-CCCeEEEEeCCcEEEEcCCCeE
Q psy2443 18 APCCTALYDFEPENPGELGFKEGDTITLMNRV-DENWYEGSLNGRTGYFPVTYVQ 71 (77)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~-~~~w~~~~~~g~~G~~P~~~~~ 71 (77)
...+.++++|.+...++|+|..|+.|.|+... ...||.|+..|..+-++.+|+.
T Consensus 400 ~~~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~mg~ke~~~~~~~~ 454 (460)
T KOG3771|consen 400 LYKVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGWLMGVKESDWNGLFP 454 (460)
T ss_pred ccceeccccccccccccccccCCCEEEEecCCCccchhhHHHhhhccccccccee
Confidence 34688999999999999999999999998854 3468888877766655555554
No 44
>KOG4575|consensus
Probab=97.76 E-value=8.7e-05 Score=47.22 Aligned_cols=54 Identities=31% Similarity=0.572 Sum_probs=45.1
Q ss_pred EEEEEeccCCCCCCeeEecCCCEEEEEEeCCCCeEEEE--eCCcEEEEcCCCeEEc
Q psy2443 20 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS--LNGRTGYFPVTYVQVV 73 (77)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~w~~~~--~~g~~G~~P~~~~~~~ 73 (77)
.++|+|.+.++....|.|-.||++.++.-.+..||.+. .....|+||+++|..+
T Consensus 10 ~vrA~y~w~ge~eGdl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvhcL 65 (874)
T KOG4575|consen 10 MVRALYAWPGEREGDLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVHCL 65 (874)
T ss_pred eEEeeccCCCCcccccceecccceeEEeeccceeeeeeeecccccccCcccceeec
Confidence 58999999999999999999999988887666677766 3456799999999654
No 45
>KOG3601|consensus
Probab=97.47 E-value=9.2e-06 Score=45.08 Aligned_cols=51 Identities=33% Similarity=0.666 Sum_probs=43.6
Q ss_pred EEEEeccCCCCCCeeEecCCCEEEEEEeC-CCCeEEEEeCCcEEEEcCCCeE
Q psy2443 21 CTALYDFEPENPGELGFKEGDTITLMNRV-DENWYEGSLNGRTGYFPVTYVQ 71 (77)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~g~~~~v~~~~-~~~w~~~~~~g~~G~~P~~~~~ 71 (77)
+.++++|.+...+||+|.+|+.+.++... +..|+.....|..|++|.+|..
T Consensus 3 a~a~n~f~a~i~dELsFlkg~~lk~l~~~d~~nw~~ael~g~~g~~P~Nai~ 54 (222)
T KOG3601|consen 3 AVAKNDFLAGIRDELSFLKGDNLKILNMEDDINWYKAELDGPEGFIPKNAIR 54 (222)
T ss_pred hhhhhhhhhcCcccceeecCCceEecchHHhhhhhhHhhcCccccCcccccc
Confidence 45678899999999999999999888865 3468888999999999998874
No 46
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=97.39 E-value=0.0014 Score=28.75 Aligned_cols=37 Identities=22% Similarity=0.676 Sum_probs=30.1
Q ss_pred eEecCCCEEEEEEeCCCC-eEEEE-eCCcEEEEcCCCeE
Q psy2443 35 LGFKEGDTITLMNRVDEN-WYEGS-LNGRTGYFPVTYVQ 71 (77)
Q Consensus 35 l~~~~g~~~~v~~~~~~~-w~~~~-~~g~~G~~P~~~~~ 71 (77)
-.+..|+.+.++.....+ |++.+ .++..||+...|++
T Consensus 17 ~~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~ 55 (55)
T PF08239_consen 17 GQLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS 55 (55)
T ss_dssp EEEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred EEEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence 467899999998876554 99994 88899999998874
No 47
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=97.34 E-value=0.00039 Score=33.65 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=29.5
Q ss_pred CCCeeEecCCCEEEEEEeCCCCeEEEE-eCCcEEEEcCCCeEE
Q psy2443 31 NPGELGFKEGDTITLMNRVDENWYEGS-LNGRTGYFPVTYVQV 72 (77)
Q Consensus 31 ~~~~l~~~~g~~~~v~~~~~~~w~~~~-~~g~~G~~P~~~~~~ 72 (77)
....|.+..|+.+.|++.++..-|.|+ ..|+-|+++.+++-.
T Consensus 29 G~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L~~ 71 (89)
T PF14603_consen 29 GGKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHLLP 71 (89)
T ss_dssp -TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS--
T ss_pred CcccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHccC
Confidence 346799999999999999988899999 789999999888743
No 48
>KOG3632|consensus
Probab=97.21 E-value=0.0017 Score=43.56 Aligned_cols=59 Identities=34% Similarity=0.629 Sum_probs=47.4
Q ss_pred CCCEEEEEeccCC------CCCCeeEecCCCEEEEEEeC-CCCeEEEE-eCCcEEEEcCCCeEEccC
Q psy2443 17 KAPCCTALYDFEP------ENPGELGFKEGDTITLMNRV-DENWYEGS-LNGRTGYFPVTYVQVVVP 75 (77)
Q Consensus 17 ~~~~~~~~~~~~~------~~~~~l~~~~g~~~~v~~~~-~~~w~~~~-~~g~~G~~P~~~~~~~~~ 75 (77)
....+.+.|+|.. ....+|.+..|+.|+|.... ..+++.|. ..|+.|.+|+++|+.+.+
T Consensus 446 k~q~~~arySynPFegpNenpeaelpltAg~yiYiyGdmdEdgfyegeL~dgrrglvPsnFVe~v~d 512 (1335)
T KOG3632|consen 446 KAQPFTARYSYNPFEGPNENPEAELPLTAGYYIYIYGDMDEDGFYEGELRDGRRGLVPSNFVEVVTD 512 (1335)
T ss_pred ccceEEEEEeccCCcCCCCCCccccccccceEEEEecCCCccccceeeeecccccCCCchheEEecc
Confidence 3446888898876 12457999999999998865 45899999 789999999999998764
No 49
>KOG3812|consensus
Probab=96.96 E-value=0.00042 Score=41.43 Aligned_cols=47 Identities=13% Similarity=0.427 Sum_probs=36.0
Q ss_pred EEEEeccCCCCC-------CeeEecCCCEEEEEEeCCCCeEEEE--e-CCcEEEEcC
Q psy2443 21 CTALYDFEPENP-------GELGFKEGDTITLMNRVDENWYEGS--L-NGRTGYFPV 67 (77)
Q Consensus 21 ~~~~~~~~~~~~-------~~l~~~~g~~~~v~~~~~~~w~~~~--~-~g~~G~~P~ 67 (77)
+++..+|.+.-. ..++|...|.+.|-.+-+++||.|+ . .+..||+|+
T Consensus 61 V~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPs 117 (475)
T KOG3812|consen 61 VRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPS 117 (475)
T ss_pred EEeccccCCccCCCCCCCCceeeeccccceeehhhcccchhHHHHhhcCCccccccc
Confidence 445567776533 3589999999999888899999998 3 345699986
No 50
>KOG3565|consensus
Probab=96.93 E-value=0.00012 Score=46.75 Aligned_cols=58 Identities=28% Similarity=0.654 Sum_probs=49.7
Q ss_pred CCCEEEEEeccCCCCCCeeEecCCCEEEEEEeC-CCCeEEEE--eCCcEEEEcCCCeEEcc
Q psy2443 17 KAPCCTALYDFEPENPGELGFKEGDTITLMNRV-DENWYEGS--LNGRTGYFPVTYVQVVV 74 (77)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~-~~~w~~~~--~~g~~G~~P~~~~~~~~ 74 (77)
....+.++|.|.+.+..++++..|+++.++..+ +.+|-+++ ..+..|++|.+|+....
T Consensus 577 ~~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~~ 637 (640)
T KOG3565|consen 577 PIRTSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVTE 637 (640)
T ss_pred CccceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCcccccccc
Confidence 345689999999999999999999999988876 56888888 77889999999997643
No 51
>KOG0199|consensus
Probab=96.91 E-value=0.0023 Score=41.96 Aligned_cols=48 Identities=25% Similarity=0.446 Sum_probs=38.5
Q ss_pred EeccCCCCCCeeEecCCCEEEEEEeCC-CCeEEEE--eCCcEEEEcCCCeE
Q psy2443 24 LYDFEPENPGELGFKEGDTITLMNRVD-ENWYEGS--LNGRTGYFPVTYVQ 71 (77)
Q Consensus 24 ~~~~~~~~~~~l~~~~g~~~~v~~~~~-~~w~~~~--~~g~~G~~P~~~~~ 71 (77)
...|+....+.|.+++||.|.|++... ..||+|. .+++.|.||.+-+.
T Consensus 380 ~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt 430 (1039)
T KOG0199|consen 380 RETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVT 430 (1039)
T ss_pred eeeccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceee
Confidence 334455688999999999999998764 4699996 67889999988775
No 52
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=96.82 E-value=0.0079 Score=26.99 Aligned_cols=37 Identities=24% Similarity=0.497 Sum_probs=28.6
Q ss_pred eeEecCCCEEEEEEeCCCCeEEEEe-CCcEEEEcCCCe
Q psy2443 34 ELGFKEGDTITLMNRVDENWYEGSL-NGRTGYFPVTYV 70 (77)
Q Consensus 34 ~l~~~~g~~~~v~~~~~~~w~~~~~-~g~~G~~P~~~~ 70 (77)
-..+..|+.+.++.....+|++.+. .|..||++..++
T Consensus 24 ~~~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~ 61 (63)
T smart00287 24 IGTLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVV 61 (63)
T ss_pred eEEecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeee
Confidence 3458899999998875548999995 499999976544
No 53
>PRK10884 SH3 domain-containing protein; Provisional
Probab=96.70 E-value=0.0037 Score=35.04 Aligned_cols=39 Identities=21% Similarity=0.391 Sum_probs=32.6
Q ss_pred eEecCCCEEEEEEeCC-CCeEEEE-eCCcEEEEcCCCeEEc
Q psy2443 35 LGFKEGDTITLMNRVD-ENWYEGS-LNGRTGYFPVTYVQVV 73 (77)
Q Consensus 35 l~~~~g~~~~v~~~~~-~~w~~~~-~~g~~G~~P~~~~~~~ 73 (77)
-.+..|+.+.++...+ .+|.+.+ ..|+.||++..|+...
T Consensus 48 ~~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~~ 88 (206)
T PRK10884 48 GTLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLSTT 88 (206)
T ss_pred EEEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcCC
Confidence 5688999999998765 5899998 6889999999887653
No 54
>KOG2996|consensus
Probab=96.37 E-value=0.0024 Score=40.80 Aligned_cols=45 Identities=29% Similarity=0.618 Sum_probs=35.2
Q ss_pred CeeEecCCCEEEEEEeC-CCCeEEEE--eCCcEEEEcCCCeEEccCCC
Q psy2443 33 GELGFKEGDTITLMNRV-DENWYEGS--LNGRTGYFPVTYVQVVVPLP 77 (77)
Q Consensus 33 ~~l~~~~g~~~~v~~~~-~~~w~~~~--~~g~~G~~P~~~~~~~~~~~ 77 (77)
..|.++.|+++.++..+ ...||.|+ ..+..|+||++.+.+..+.|
T Consensus 625 P~l~~~~gdvlel~~~d~~s~~w~gr~~~sr~sg~fpss~vkp~~~vp 672 (865)
T KOG2996|consen 625 PRLVLQEGDVLELLKGDAESSWWEGRNHGSRESGNFPSSTVKPCPSVP 672 (865)
T ss_pred CceEecCCceeehhcCCCCCcccccCCccCCccCCCCccccCcCCCCC
Confidence 46899999999887755 66899999 44567999999888665443
No 55
>KOG0040|consensus
Probab=95.25 E-value=8.7e-05 Score=51.16 Aligned_cols=54 Identities=35% Similarity=0.834 Sum_probs=48.2
Q ss_pred EEEEeccCCCCCCeeEecCCCEEEEEEeCCCCeEEEEeCCcEEEEcCCCeEEcc
Q psy2443 21 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVV 74 (77)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~w~~~~~~g~~G~~P~~~~~~~~ 74 (77)
+.++|+|....+-+.+.++||++.++...+..||.+++..+.|++|..|++.+-
T Consensus 971 v~alyd~q~kSprev~mKkgDvltll~s~nkdwwkve~~d~qg~vpa~yvk~~~ 1024 (2399)
T KOG0040|consen 971 VLALYDYQEKSPREVTMKKGDVLTLLNSINKDWWKVEVNDRQGFVPAAYVKRLD 1024 (2399)
T ss_pred HHHHHHHHhcCHHHHHHhhhhHHHHHhhcccccccchhhhhcCcchHHHHHHhc
Confidence 567899999999999999999998888888899999999999999999987754
No 56
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=95.09 E-value=0.11 Score=22.71 Aligned_cols=36 Identities=17% Similarity=0.434 Sum_probs=28.4
Q ss_pred eeEecCCCEEEEEEeCCCCeEEEEeCCcEEEEcCCCe
Q psy2443 34 ELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYV 70 (77)
Q Consensus 34 ~l~~~~g~~~~v~~~~~~~w~~~~~~g~~G~~P~~~~ 70 (77)
...+..|..+.+. ....+|.+.+.+|..||+....+
T Consensus 18 v~~l~~g~~v~v~-~~~~~W~~V~~~g~~GWv~~~~l 53 (55)
T PF06347_consen 18 VARLEPGVPVRVI-ECRGGWCKVRADGRTGWVHKSLL 53 (55)
T ss_pred EEEECCCCEEEEE-EccCCeEEEEECCeEEeEEeeec
Confidence 3567888888777 44678999999999999987654
No 57
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=95.09 E-value=0.079 Score=33.39 Aligned_cols=38 Identities=21% Similarity=0.469 Sum_probs=31.6
Q ss_pred eEecCCCEEEEEEeCCCCeEEEEe-CCcEEEEcCCCeEE
Q psy2443 35 LGFKEGDTITLMNRVDENWYEGSL-NGRTGYFPVTYVQV 72 (77)
Q Consensus 35 l~~~~g~~~~v~~~~~~~w~~~~~-~g~~G~~P~~~~~~ 72 (77)
-.+..|+.+.++.....+|++.+. +|+.||+-..|+..
T Consensus 103 gsl~~G~~V~Vl~~~~ngW~kI~~~~GktGwV~~~YLs~ 141 (481)
T PRK13914 103 TSIKGGTKVTVETTESNGWHKITYNDGKTGFVNGKYLTD 141 (481)
T ss_pred eeecCCCEEEEeecccCCeEEEEcCCCCEEEEecccccC
Confidence 578999999997655678999996 59999998888764
No 58
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=94.26 E-value=0.19 Score=28.36 Aligned_cols=38 Identities=21% Similarity=0.421 Sum_probs=31.2
Q ss_pred eEecCCCEEEEEEeCCC-CeEEEE-eCCcEEEEcCCCeEE
Q psy2443 35 LGFKEGDTITLMNRVDE-NWYEGS-LNGRTGYFPVTYVQV 72 (77)
Q Consensus 35 l~~~~g~~~~v~~~~~~-~w~~~~-~~g~~G~~P~~~~~~ 72 (77)
-+++.|+.+.|+..... +|.+.+ ..|+.|||+..++..
T Consensus 48 ~~i~~Ge~vtvl~~~~~~~~~qI~~~~g~t~wi~~~~lt~ 87 (205)
T COG3103 48 GSIKAGEKVTVLGTDGNTGYYQIRDSSGRTGWILSKNLTS 87 (205)
T ss_pred eEecCCcEEEEEEEcCcccEEEEEecCCceEEEechhhcc
Confidence 47899999999998755 799998 678999998866543
No 59
>PF12913 SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B.
Probab=92.74 E-value=0.44 Score=21.16 Aligned_cols=34 Identities=12% Similarity=0.247 Sum_probs=23.3
Q ss_pred eeEecCCCEEEEEEeC-CCCeEEEEeCCcEEEEcC
Q psy2443 34 ELGFKEGDTITLMNRV-DENWYEGSLNGRTGYFPV 67 (77)
Q Consensus 34 ~l~~~~g~~~~v~~~~-~~~w~~~~~~g~~G~~P~ 67 (77)
+-.+..|+-+.|++.+ +..|..++.....||+++
T Consensus 20 ~s~l~~gtPv~i~H~S~D~~W~fV~t~~~~GWV~s 54 (54)
T PF12913_consen 20 NSALHPGTPVYILHTSRDGAWAFVQTPFYSGWVKS 54 (54)
T ss_dssp EEEE-TT-EEEEEEE-TTSSEEEEE-SS-EEEEEG
T ss_pred hcccCCCCCEEEEEECCCCCEEEEecCCeeEeeeC
Confidence 4567889999999976 557989998888899863
No 60
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=92.10 E-value=0.36 Score=21.50 Aligned_cols=22 Identities=27% Similarity=0.884 Sum_probs=18.6
Q ss_pred EecCCCEEEEEEeCCCCeEEEE
Q psy2443 36 GFKEGDTITLMNRVDENWYEGS 57 (77)
Q Consensus 36 ~~~~g~~~~v~~~~~~~w~~~~ 57 (77)
.|++|+.+.+....+..||.+.
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~ 23 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAV 23 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEE
Confidence 4788999998887778899997
No 61
>KOG3705|consensus
Probab=92.06 E-value=0.23 Score=31.00 Aligned_cols=53 Identities=19% Similarity=0.318 Sum_probs=37.8
Q ss_pred EEEEEeccCCCCCCeeEecCCCEEEEEEeCCCCeEEEE--eCCcEEEEcCCCeEE
Q psy2443 20 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS--LNGRTGYFPVTYVQV 72 (77)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~w~~~~--~~g~~G~~P~~~~~~ 72 (77)
..+++++..+....++.++.||.+.|-.-.=.|.-.|. ..++.|.||+--+++
T Consensus 511 n~ivi~aH~prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvre 565 (580)
T KOG3705|consen 511 NVIVIEAHIPRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVRE 565 (580)
T ss_pred ceEEEEecCCCcccccCcccCCeeeecccccccccccccccccccCCCccceeee
Confidence 46778888888899999999999977553222333343 556889999855554
No 62
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=87.64 E-value=1.1 Score=21.26 Aligned_cols=24 Identities=33% Similarity=0.732 Sum_probs=16.6
Q ss_pred eeEecCCCEEEEEEeC------CCCeEEEE
Q psy2443 34 ELGFKEGDTITLMNRV------DENWYEGS 57 (77)
Q Consensus 34 ~l~~~~g~~~~v~~~~------~~~w~~~~ 57 (77)
-|.++.|+.+.+.... +..||.|.
T Consensus 3 FL~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~ 32 (75)
T PF11302_consen 3 FLSVKPGDTVIVQDEQEVGQKQDKDWWMGQ 32 (75)
T ss_pred ccccCCCCEEEEecCccccccCCCCcEEEE
Confidence 4678888887655432 45799986
No 63
>KOG4384|consensus
Probab=81.69 E-value=2 Score=26.30 Aligned_cols=54 Identities=30% Similarity=0.517 Sum_probs=42.3
Q ss_pred EEEEEeccCC--CCCCeeEecCCCEEEEEEeCCCCeEEEEeCCcEEEEcCCCeEEc
Q psy2443 20 CCTALYDFEP--ENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 73 (77)
Q Consensus 20 ~~~~~~~~~~--~~~~~l~~~~g~~~~v~~~~~~~w~~~~~~g~~G~~P~~~~~~~ 73 (77)
.+++.-+|.. ...+++.+.+|+++.++.+...+-|.+-..++.|.|+..|+..+
T Consensus 138 ~~~~~t~~tp~p~~~d~lk~~~~~~i~~~~~~~~~~~~g~~~~kv~~f~~~~v~~~ 193 (361)
T KOG4384|consen 138 RARVHTDFTPSPYDTDSLKIKKGDIIDIIEKPPMGTWLGLLNNKVGSFKFIYVDVI 193 (361)
T ss_pred cccccccCCCCcccccchhhcccchhhccccCccccccccccCcccccccceeccc
Confidence 3455555554 46678999999999999988778888888999998988887764
No 64
>KOG3580|consensus
Probab=80.36 E-value=3.7 Score=27.40 Aligned_cols=49 Identities=20% Similarity=0.499 Sum_probs=35.6
Q ss_pred EEEEEeccCCCCCCeeEecCCCEEEEEEeCC----CCeEEEEeCC-----cEEEEcCC
Q psy2443 20 CCTALYDFEPENPGELGFKEGDTITLMNRVD----ENWYEGSLNG-----RTGYFPVT 68 (77)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~g~~~~v~~~~~----~~w~~~~~~g-----~~G~~P~~ 68 (77)
+.+..|.++...+..|.|.+|+++.+++..- ..|+..+... ..|++|..
T Consensus 506 yIRtHFE~Eke~P~gL~FtrGeVFrvvDTLy~GklG~WLAvRiG~dlrE~ErGiIPNk 563 (1027)
T KOG3580|consen 506 YIRTHFECEKETPQGLAFTRGEVFRVVDTLYDGKLGNWLAVRIGNDLRELERGIIPNK 563 (1027)
T ss_pred EEeeeeeecCCCCccccccccceeeeeecccCCCCcceEEEeecccHHHHhcccCCCc
Confidence 4666788888889999999999999887542 2366665322 46888853
No 65
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=66.17 E-value=12 Score=24.53 Aligned_cols=38 Identities=21% Similarity=0.463 Sum_probs=27.1
Q ss_pred ecCCCEEEEEEeC-----CCCeEEEE-eCCcEEEEcCCCeEEcc
Q psy2443 37 FKEGDTITLMNRV-----DENWYEGS-LNGRTGYFPVTYVQVVV 74 (77)
Q Consensus 37 ~~~g~~~~v~~~~-----~~~w~~~~-~~g~~G~~P~~~~~~~~ 74 (77)
..=|+.+.|..+. +..|.+.. ..|..||+-..+++.+.
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (549)
T PRK13545 372 ANFGDIFTISDSNKNEKKDVEWIQITLSNGEIGWISTKFIEPFK 415 (549)
T ss_pred EecCceEEEcccccccccCcceEEEEecCCccceeeeeeeeecc
Confidence 3446676665532 33699888 78999999988887753
No 66
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=63.01 E-value=14 Score=16.83 Aligned_cols=21 Identities=29% Similarity=0.779 Sum_probs=12.3
Q ss_pred ecCCCEEEEEEeCCC---CeEEEE
Q psy2443 37 FKEGDTITLMNRVDE---NWYEGS 57 (77)
Q Consensus 37 ~~~g~~~~v~~~~~~---~w~~~~ 57 (77)
|++|+.+.|....+. .|+.+.
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~ 24 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPAT 24 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEE
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEE
Confidence 578999988876532 477776
No 67
>COG3807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.04 E-value=32 Score=18.89 Aligned_cols=23 Identities=13% Similarity=0.469 Sum_probs=17.6
Q ss_pred EEEeCCCCeEEEEeCCcEEEEcC
Q psy2443 45 LMNRVDENWYEGSLNGRTGYFPV 67 (77)
Q Consensus 45 v~~~~~~~w~~~~~~g~~G~~P~ 67 (77)
.+.+++..|.+.+.+|..||+-.
T Consensus 136 sl~~C~g~wC~~~~~g~~GWi~q 158 (171)
T COG3807 136 SLKKCKGQWCRLTAKGYSGWISQ 158 (171)
T ss_pred EecccccceEEEEccCccceeec
Confidence 45566778988889999998743
No 68
>KOG1314|consensus
Probab=48.40 E-value=29 Score=21.78 Aligned_cols=38 Identities=21% Similarity=0.449 Sum_probs=26.3
Q ss_pred CCCeeEecCCCEEEEEEeCCCCeEEEE-------eCC----cEEEEcCCC
Q psy2443 31 NPGELGFKEGDTITLMNRVDENWYEGS-------LNG----RTGYFPVTY 69 (77)
Q Consensus 31 ~~~~l~~~~g~~~~v~~~~~~~w~~~~-------~~g----~~G~~P~~~ 69 (77)
+...++++.||.+.+..- ...|..|. ..+ -+||||.+.
T Consensus 330 ddprisL~p~d~i~~tr~-~~~wlyg~~~l~e~~~E~~~rkiRgwfP~~~ 378 (414)
T KOG1314|consen 330 DDPRISLPPGDGIKATRG-FNHWLYGEEILSEMFNESRERKIRGWFPRNC 378 (414)
T ss_pred CCcccccCCCcceeeeee-eecccchhhhhhHHHhhcchhhhcccccccc
Confidence 455689999999866554 45677772 111 369999877
No 69
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=42.33 E-value=31 Score=14.63 Aligned_cols=20 Identities=35% Similarity=0.709 Sum_probs=11.1
Q ss_pred ecCCCEEEEEEeCCCCeEEEE
Q psy2443 37 FKEGDTITLMNRVDENWYEGS 57 (77)
Q Consensus 37 ~~~g~~~~v~~~~~~~w~~~~ 57 (77)
++.|+.+.+.- .+..|++++
T Consensus 3 ~~~G~~~~a~~-~d~~wyra~ 22 (57)
T smart00333 3 FKVGDKVAARW-EDGEWYRAR 22 (57)
T ss_pred CCCCCEEEEEe-CCCCEEEEE
Confidence 44555554444 455666665
No 70
>PF07828 PA-IL: PA-IL-like protein; InterPro: IPR012905 The members of this family are similar to the galactophilic lectin-1 expressed by Pseudomonas aeruginosa (PA-IL, Q05097 from SWISSPROT). Lectins recognising specific carbohydrates found on the surface of host cells are known to be involved in the initiation of infections by this organism. The protein is thought to be organised into an extensive network of beta-sheets, as is the case with many other lectins []. ; PDB: 3ZYB_E 3ZYF_C 1L7L_A 3ZYH_A.
Probab=34.81 E-value=64 Score=16.86 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=11.9
Q ss_pred CCeeEecCCCEEEEEEe
Q psy2443 32 PGELGFKEGDTITLMNR 48 (77)
Q Consensus 32 ~~~l~~~~g~~~~v~~~ 48 (77)
...|.+++||+|.++-+
T Consensus 15 ~TGl~lk~GD~IsIvA~ 31 (121)
T PF07828_consen 15 NTGLILKAGDIISIVAS 31 (121)
T ss_dssp EEEEEE-TT-EEEEEEE
T ss_pred eeeEEEcCCCEEEEEEe
Confidence 34689999999998864
No 71
>KOG3416|consensus
Probab=33.10 E-value=28 Score=18.45 Aligned_cols=15 Identities=27% Similarity=0.275 Sum_probs=10.9
Q ss_pred eEecCCCEEEEEEeC
Q psy2443 35 LGFKEGDTITLMNRV 49 (77)
Q Consensus 35 l~~~~g~~~~v~~~~ 49 (77)
-.++.||++.+...-
T Consensus 60 ~~~~PGDIirLt~Gy 74 (134)
T KOG3416|consen 60 CLIQPGDIIRLTGGY 74 (134)
T ss_pred cccCCccEEEecccc
Confidence 468889998776543
No 72
>PF04648 MF_alpha: Yeast mating factor alpha hormone; InterPro: IPR006742 This repeated sequence,WHWLQLKPGQPMY, characterises the mating factor alpha-1 or alpha-1 mating pheromone [contains: Mating factor alpha].The hormone is excreted into the culture medium by haploid cells of the alpha mating type and acts on cells of the opposite mating type (type A) by binding to a cognate G-protein coupled receptor which is coupled to a downstream signal transduction pathway. It inhibits DNA synthesis in type A cells synchronising them with type alpha, and so mediates the conjugation process.; GO: 0000772 mating pheromone activity, 0019953 sexual reproduction, 0005576 extracellular region
Probab=32.84 E-value=18 Score=11.14 Aligned_cols=7 Identities=29% Similarity=0.577 Sum_probs=3.1
Q ss_pred eEecCCC
Q psy2443 35 LGFKEGD 41 (77)
Q Consensus 35 l~~~~g~ 41 (77)
|+|..|+
T Consensus 4 L~~~~Gq 10 (13)
T PF04648_consen 4 LRLSPGQ 10 (13)
T ss_pred eeccCCC
Confidence 3444444
No 73
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=31.70 E-value=71 Score=17.90 Aligned_cols=22 Identities=23% Similarity=0.591 Sum_probs=14.0
Q ss_pred CCeeEecCCCEEEEEEeCCCCeEEEE
Q psy2443 32 PGELGFKEGDTITLMNRVDENWYEGS 57 (77)
Q Consensus 32 ~~~l~~~~g~~~~v~~~~~~~w~~~~ 57 (77)
..+..+..||++.| ..+||...
T Consensus 208 ~~~~~l~pGD~Lfi----P~gWwH~V 229 (251)
T PF13621_consen 208 PYEVVLEPGDVLFI----PPGWWHQV 229 (251)
T ss_dssp EEEEEEETT-EEEE-----TT-EEEE
T ss_pred eeEEEECCCeEEEE----CCCCeEEE
Confidence 34678899999866 56788765
No 74
>PRK02749 photosystem I reaction center subunit IV; Provisional
Probab=28.73 E-value=51 Score=15.46 Aligned_cols=19 Identities=21% Similarity=0.721 Sum_probs=12.2
Q ss_pred EecCCCEEEEEEeCCCCeEE
Q psy2443 36 GFKEGDTITLMNRVDENWYE 55 (77)
Q Consensus 36 ~~~~g~~~~v~~~~~~~w~~ 55 (77)
.+++|+.+.|++.. ..|+.
T Consensus 2 ~i~rGskVrIlR~E-SYWyn 20 (71)
T PRK02749 2 AISRGDKVRILRPE-SYWYN 20 (71)
T ss_pred ccccCCEEEEcccc-ceeec
Confidence 35778888887763 34543
No 75
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=25.08 E-value=87 Score=15.10 Aligned_cols=17 Identities=29% Similarity=0.606 Sum_probs=13.8
Q ss_pred eeEecCCCEEEEEEeCC
Q psy2443 34 ELGFKEGDTITLMNRVD 50 (77)
Q Consensus 34 ~l~~~~g~~~~v~~~~~ 50 (77)
.+.++.||++.+...+.
T Consensus 49 ~~g~k~GdVvkI~R~S~ 65 (79)
T PRK09570 49 AIGAKPGDVIKIVRKSP 65 (79)
T ss_pred hcCCCCCCEEEEEECCC
Confidence 46789999999988753
No 76
>KOG2130|consensus
Probab=24.98 E-value=1.9e+02 Score=18.25 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=18.0
Q ss_pred CCeeEecCCCEEEEEEeCCCCeEEEEeC
Q psy2443 32 PGELGFKEGDTITLMNRVDENWYEGSLN 59 (77)
Q Consensus 32 ~~~l~~~~g~~~~v~~~~~~~w~~~~~~ 59 (77)
+-|+....|+.+.| ..|||.+..+
T Consensus 262 PIEc~q~pGEt~fV----P~GWWHvVlN 285 (407)
T KOG2130|consen 262 PIECLQKPGETMFV----PSGWWHVVLN 285 (407)
T ss_pred CceeeecCCceEEe----cCCeEEEEec
Confidence 45778888888865 6789998743
No 77
>CHL00125 psaE photosystem I subunit IV; Reviewed
Probab=24.55 E-value=76 Score=14.58 Aligned_cols=18 Identities=22% Similarity=0.866 Sum_probs=11.7
Q ss_pred ecCCCEEEEEEeCCCCeEE
Q psy2443 37 FKEGDTITLMNRVDENWYE 55 (77)
Q Consensus 37 ~~~g~~~~v~~~~~~~w~~ 55 (77)
+++|+.+.|++. +..|+.
T Consensus 2 i~rGskVrIlR~-ESYWyn 19 (64)
T CHL00125 2 VKRGSKVRILRK-ESYWYN 19 (64)
T ss_pred cccCCEEEEccc-cceeec
Confidence 467888888876 344553
No 78
>PF01191 RNA_pol_Rpb5_C: RNA polymerase Rpb5, C-terminal domain; InterPro: IPR000783 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region (IPR005571 from INTERPRO), plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) [, , , ]. This entry represents prokaryotic subunit H and the C-terminal domain of eukaryotic RPB5, which share a two-layer alpha/beta fold, with a core structure of beta/alpha/beta/alpha/beta(2). ; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1EIK_A 2Y0S_Z 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E ....
Probab=23.73 E-value=62 Score=15.35 Aligned_cols=16 Identities=31% Similarity=0.740 Sum_probs=11.6
Q ss_pred eEecCCCEEEEEEeCC
Q psy2443 35 LGFKEGDTITLMNRVD 50 (77)
Q Consensus 35 l~~~~g~~~~v~~~~~ 50 (77)
+.++.||++.+...+.
T Consensus 47 ~g~k~GdVvkI~R~S~ 62 (74)
T PF01191_consen 47 LGAKPGDVVKIIRKSE 62 (74)
T ss_dssp TT--TTSEEEEEEEET
T ss_pred cCCCCCCEEEEEecCC
Confidence 6789999999988754
No 79
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=23.61 E-value=1e+02 Score=17.92 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=15.9
Q ss_pred CCeeEecCCCEEEEEEeCCCC
Q psy2443 32 PGELGFKEGDTITLMNRVDEN 52 (77)
Q Consensus 32 ~~~l~~~~g~~~~v~~~~~~~ 52 (77)
.-.|+...||++.|+.....|
T Consensus 24 GvSL~A~~GdVisIIGsSGSG 44 (256)
T COG4598 24 GVSLQANAGDVISIIGSSGSG 44 (256)
T ss_pred ceeeecCCCCEEEEecCCCCc
Confidence 345888999999999875443
No 80
>PF14898 DUF4491: Domain of unknown function (DUF4491)
Probab=22.61 E-value=24 Score=17.59 Aligned_cols=9 Identities=33% Similarity=0.796 Sum_probs=5.8
Q ss_pred cEEEEcCCC
Q psy2443 61 RTGYFPVTY 69 (77)
Q Consensus 61 ~~G~~P~~~ 69 (77)
+.||||.|-
T Consensus 83 ~kGWFP~NP 91 (94)
T PF14898_consen 83 EKGWFPKNP 91 (94)
T ss_pred HcCCCCCCC
Confidence 357787763
No 81
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=22.18 E-value=1.9 Score=23.93 Aligned_cols=36 Identities=28% Similarity=0.514 Sum_probs=22.6
Q ss_pred CCeeEecCCCEEEEEEeC-CCCeEEEE-eCCcEEEEcC
Q psy2443 32 PGELGFKEGDTITLMNRV-DENWYEGS-LNGRTGYFPV 67 (77)
Q Consensus 32 ~~~l~~~~g~~~~v~~~~-~~~w~~~~-~~g~~G~~P~ 67 (77)
.+...-.-|.++.++.+. ..||..|= ..|+.|+|++
T Consensus 52 ~~~~~~~~G~V~e~LSEh~c~G~leGY~LtGrhglf~s 89 (179)
T PF03894_consen 52 DDEHLAPGGRVMEVLSEHQCQGWLEGYLLTGRHGLFAS 89 (179)
T ss_dssp T-TTEESS-SEEE-S-HHHHHHHHHHHHHTT-EEEEEE
T ss_pred chhhcccCCeeeeecCHHHHHHHHHHHHhcCCcccccc
Confidence 335566678888888765 55787775 8899999864
No 82
>CHL00141 rpl24 ribosomal protein L24; Validated
Probab=21.68 E-value=1.2e+02 Score=14.68 Aligned_cols=18 Identities=28% Similarity=0.562 Sum_probs=11.9
Q ss_pred eeEecCCCEEEEEEeCCC
Q psy2443 34 ELGFKEGDTITLMNRVDE 51 (77)
Q Consensus 34 ~l~~~~g~~~~v~~~~~~ 51 (77)
.+.+.+||.+.|+...+.
T Consensus 6 ~~~I~~GD~V~Vi~G~dK 23 (83)
T CHL00141 6 KMHVKIGDTVKIISGSDK 23 (83)
T ss_pred eCcccCCCEEEEeEcCCC
Confidence 356778888877765443
No 83
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=21.39 E-value=1.6e+02 Score=16.08 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=13.9
Q ss_pred cCCCCCCeeEecCCCEEEE
Q psy2443 27 FEPENPGELGFKEGDTITL 45 (77)
Q Consensus 27 ~~~~~~~~l~~~~g~~~~v 45 (77)
+-+....+|.+..||++.+
T Consensus 79 iGG~~G~el~v~~GDvlli 97 (163)
T COG4297 79 IGGADGQELEVGEGDVLLI 97 (163)
T ss_pred ecCCCCceeeecCCCEEEE
Confidence 4455667889999998754
Done!