RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2443
(77 letters)
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 112 bits (282), Expect = 7e-35
Identities = 25/74 (33%), Positives = 41/74 (55%)
Query: 4 PSPVRQGRTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTG 63
AP AL+DF + EL FK GD I L++R++++W EG++ G TG
Sbjct: 4 KVHHHHHHHMDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATG 63
Query: 64 YFPVTYVQVVVPLP 77
FP+++V+++ P
Sbjct: 64 IFPLSFVKILKDFP 77
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 109 bits (274), Expect = 1e-33
Identities = 41/59 (69%), Positives = 50/59 (84%)
Query: 19 PCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVPLP 77
PCC LYDFEPEN GELGFKEGD ITL N++DENWYEG ++G +G+FP+ YV+V+VPL
Sbjct: 4 PCCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVIVPLE 62
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 108 bits (271), Expect = 2e-33
Identities = 43/61 (70%), Positives = 53/61 (86%)
Query: 17 KAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVPL 76
P C ALYDFEPEN GELGF+EGD ITL N++DENWYEG L+G++G+FP++YVQV+VPL
Sbjct: 12 DQPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQVLVPL 71
Query: 77 P 77
P
Sbjct: 72 P 72
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 106 bits (268), Expect = 5e-33
Identities = 23/59 (38%), Positives = 40/59 (67%)
Query: 15 VNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 73
+ K AL+DF + EL FK GD I L++R++++W EG++ G TG FP+++V+++
Sbjct: 1 LIKHMRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKIL 59
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain
protein 2A, endophilin 1, EEN-B1, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 106 bits (268), Expect = 8e-33
Identities = 42/62 (67%), Positives = 52/62 (83%)
Query: 16 NKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVP 75
+ PCC ALYDFEPEN GELGFKEGD ITL N++DENWYEG L+G +G+FP+ YV+++V
Sbjct: 5 SSGPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILVA 64
Query: 76 LP 77
LP
Sbjct: 65 LP 66
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 103 bits (258), Expect = 2e-31
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 15 VNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 71
+ K AL+ +E P +L F+EGD I ++++V+E W EG G+ G FP +V+
Sbjct: 2 LKKGSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVE 58
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 102 bits (257), Expect = 3e-31
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 19 PCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVPLP 77
+DF+ ++P EL ++GD + + VD+NW EG +GR G FP YV+ V+PL
Sbjct: 2 KAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVE-VLPLE 59
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 102 bits (257), Expect = 4e-31
Identities = 25/60 (41%), Positives = 39/60 (65%)
Query: 16 NKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVP 75
+ P AL ++ +NPG+L F +GD I L ++DENWY+G +NG +G FP + V+V+
Sbjct: 5 SSGPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEVISG 64
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 100 bits (252), Expect = 2e-30
Identities = 20/59 (33%), Positives = 37/59 (62%)
Query: 19 PCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVPLP 77
ALYD++ ++P E+ K+GD +TL+N +++W++ +N R G+ P YV+ + P
Sbjct: 6 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQ 64
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 99.2 bits (248), Expect = 6e-30
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 19 PCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQV 72
A +D+ + EL FK+G ++ L +R E+W+EG NG G P Y+ V
Sbjct: 7 EFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIVV 60
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 99.4 bits (248), Expect = 1e-29
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 5 SPVRQGRTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGY 64
S ALYD++ ++P E+ K+GD +TL+N +++W++ +N R G+
Sbjct: 4 SHHHHHHGSDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGF 63
Query: 65 FPVTYVQVVVPLP 77
P YV+ +
Sbjct: 64 VPAAYVKKLAAAW 76
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 97.7 bits (244), Expect = 3e-29
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 18 APCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 73
A +DF+ + EL ++GD + + ++D+NWYEG +GR G FP TY++++
Sbjct: 7 GRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELL 62
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 97.7 bits (244), Expect = 3e-29
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 14 VVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNG--RTGYFPVTYVQ 71
+ A ++F + E+ F++G+ ITL+ +VDENWYEG + G R G FP+TYV
Sbjct: 2 IDPFTGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 61
Query: 72 VV-VPL 76
V+ PL
Sbjct: 62 VIKRPL 67
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 97.6 bits (244), Expect = 3e-29
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 18 APCCTALYDFEPENPGELGFKEGDTITLMNRVDE--NWYEGSLNGRTGYFPVTYVQVV 73
+P ALY F E G+L F++GD IT++ + D +W+ G +NGR G FP YV++V
Sbjct: 3 SPKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV 60
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42
guanine nucleotide exchange factor (GEF) 9, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 97.8 bits (244), Expect = 4e-29
Identities = 16/66 (24%), Positives = 33/66 (50%)
Query: 12 TPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 71
+ A++D EL FK GD I +++ +++W+ G ++ G+FP ++V+
Sbjct: 4 GSSGDSIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVR 63
Query: 72 VVVPLP 77
+ V
Sbjct: 64 LWVNQE 69
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 97.4 bits (243), Expect = 5e-29
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 16 NKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVP 75
+ AL DFE + ELGF++ D IT++++ DE+ + G LNG G+FP +V+V+
Sbjct: 5 SSGRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDE 64
Query: 76 LP 77
Sbjct: 65 RS 66
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein;
1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A
1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A
1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A
...
Length = 62
Score = 96.9 bits (242), Expect = 5e-29
Identities = 19/58 (32%), Positives = 36/58 (62%)
Query: 16 NKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 73
LYD++ ++P EL K+GD +TL+N +++W++ +NGR G+ P Y++ +
Sbjct: 4 TGKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKKL 61
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 96.9 bits (242), Expect = 6e-29
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 19 PCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 73
ALY F P+ +L + GD ITL+ +E+W++G + R G+FP +VQ +
Sbjct: 8 NTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRL 62
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 97.4 bits (243), Expect = 6e-29
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 16 NKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVP 75
+ ALYD++ E+ F D IT + +D+ W+ G GR G FP YV++
Sbjct: 15 DLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQS 74
Query: 76 LP 77
P
Sbjct: 75 GP 76
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins,
CIN85, PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 96.9 bits (242), Expect = 7e-29
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 16 NKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVP 75
N A ++F+ N EL F +GD I + + W+EG+ NGRTG+FP YV+ + P
Sbjct: 4 NSQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREIKP 63
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 97.9 bits (244), Expect = 8e-29
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 3 LPSPVRQGRTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRT 62
L P + TP + A+YD+ N EL F +G I +MN+ D +W++G +NG T
Sbjct: 19 LLGPSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVT 78
Query: 63 GYFPVTYVQVVVPLP 77
G FP YV++
Sbjct: 79 GLFPSNYVKMTTDSS 93
Score = 27.4 bits (61), Expect = 0.28
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 59 NGRTGYFPVTYVQVVVPLP 77
+G+ G+FP ++V+++ P
Sbjct: 6 SGQKGWFPASHVKLLGPSS 24
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 96.6 bits (241), Expect = 1e-28
Identities = 15/66 (22%), Positives = 23/66 (34%)
Query: 12 TPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 71
A + + EL F+ GD + L R +W+ G NG G P Y+
Sbjct: 4 GSSGEGVVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYIT 63
Query: 72 VVVPLP 77
+
Sbjct: 64 LPAGTE 69
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein,
membrane, nuclear protein, phosphorylation,
polymorphism, transport, structural genomics; NMR {Homo
sapiens}
Length = 70
Score = 96.2 bits (240), Expect = 1e-28
Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 19 PCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNG--RTGYFPVTYVQVV 73
A ++F + E+ F++G+ ITL+ +VDENWYEG + G R G FP+TYV V+
Sbjct: 8 GEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVI 64
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling
protein; 2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 95.8 bits (239), Expect = 2e-28
Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 18 APCCTALYDFEPENPGELGFKEGDTITLMNR--VDENWYEGSLNGRTGYFPVTYVQVVVP 75
+ C ++ +E +N EL KEGD +TL+N+ +D W+EG LNGR G FP +V+++ P
Sbjct: 2 SDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPP 61
Query: 76 LP 77
L
Sbjct: 62 LE 63
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 95.7 bits (239), Expect = 2e-28
Identities = 25/58 (43%), Positives = 32/58 (55%)
Query: 16 NKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 73
+ ALY FEP P EL F+EGD I + + D NW++G+ GRTG P YV
Sbjct: 5 SSGKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ 62
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 96.4 bits (240), Expect = 2e-28
Identities = 22/75 (29%), Positives = 35/75 (46%)
Query: 1 SPLPSPVRQGRTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNG 60
S + C + + P+N EL K GD I ++ V+E W+EG LNG
Sbjct: 1 SMTGGQQMGTNKRGERRRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNG 60
Query: 61 RTGYFPVTYVQVVVP 75
+TG FP +++ +
Sbjct: 61 KTGMFPSNFIKELSG 75
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 96.4 bits (240), Expect = 2e-28
Identities = 21/66 (31%), Positives = 31/66 (46%)
Query: 12 TPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 71
A ALYDFE EL FK G+ I +++ D NW++G + G FP +V
Sbjct: 11 QLNNKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVT 70
Query: 72 VVVPLP 77
+ +
Sbjct: 71 TNLNIE 76
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif)
2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 95.4 bits (238), Expect = 2e-28
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 16 NKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVV 74
+ A ALYDFE EL FK G+ IT+++ D NW++G + TG FP +V +
Sbjct: 3 HMARRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTTDL 61
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 94.9 bits (237), Expect = 3e-28
Identities = 26/53 (49%), Positives = 37/53 (69%)
Query: 21 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 73
AL+DF+P+ GELGF+ GD I +M+ D NW++G+ +G+TG FP YV V
Sbjct: 5 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTAV 57
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural
genomics, northeast structural genomics consortiu
PSI-2, protein structure initiative; NMR {Homo sapiens}
Length = 72
Score = 95.5 bits (238), Expect = 3e-28
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 11 RTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYV 70
++A A+YDFE EL FK G+ IT+++ D NW++G + G FP +V
Sbjct: 10 HMNHQHEARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFV 69
Query: 71 Q 71
Sbjct: 70 T 70
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 95.0 bits (237), Expect = 4e-28
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 10 GRTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTY 69
G + ALYD++ E+ F D IT + +D+ W+ G GR G FP Y
Sbjct: 1 GPLGSSDLGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANY 60
Query: 70 VQVV 73
V++
Sbjct: 61 VELR 64
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 94.5 bits (236), Expect = 4e-28
Identities = 25/55 (45%), Positives = 34/55 (61%)
Query: 19 PCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 73
ALY F+P+ G+LG K GD + L+ ++ WY+GS NGRTG FP YV+
Sbjct: 3 EYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVKPA 57
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 94.7 bits (236), Expect = 5e-28
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 12 TPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNR--VDENWYEGSLNGRTGYFPVTY 69
C ++ +E +N EL KEGD +TL+N+ +D W+EG LNGR G FP +
Sbjct: 3 DSRTKSKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNF 62
Query: 70 VQVVVP 75
V+++ P
Sbjct: 63 VKLLPP 68
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 94.7 bits (236), Expect = 6e-28
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 10 GRTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTY 69
G + + A +D+ EL FK+G ++ L R ++W+EG NG G P Y
Sbjct: 1 GSSGSSGEPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQY 60
Query: 70 VQVV 73
+ V
Sbjct: 61 IVVQ 64
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3,
SH3-containing adapter molecule 1, SCAM-1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 90
Score = 95.2 bits (237), Expect = 6e-28
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 12 TPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSL--NGRTGYFPVTY 69
T V + A Y F+ + EL F++G+ I L+ +V+ENWYEG + GR G FP +Y
Sbjct: 11 TYQVLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASY 70
Query: 70 VQVVVPLP 77
VQV
Sbjct: 71 VQVSREPR 78
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein;
2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB:
2sem_A 3sem_A 1k76_A 1kfz_A
Length = 58
Score = 94.1 bits (235), Expect = 7e-28
Identities = 29/55 (52%), Positives = 35/55 (63%)
Query: 17 KAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 71
+ AL+DF P+ GEL FK GD ITL+N+ D NW+EG LN R G FP YV
Sbjct: 1 ETKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVC 55
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 94.1 bits (235), Expect = 7e-28
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 17 KAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 71
+ ALY FEP P EL F+EGD I + + D NW++G+ GRTG P YV
Sbjct: 2 QVKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVA 56
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 94.7 bits (236), Expect = 7e-28
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 16 NKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVP 75
+ C ALY F+ EL ++GD + + + +E W+ GSLNG+ G+FP YV+ +
Sbjct: 5 SSGRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPS 64
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 94.2 bits (235), Expect = 7e-28
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 13 PVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQV 72
P+ +K C L+++ P+N EL K GD I + V+E W+ G+LN + G FP +V+
Sbjct: 2 PLGSKKRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKE 61
Query: 73 V 73
+
Sbjct: 62 L 62
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 93.7 bits (234), Expect = 9e-28
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 21 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVV 74
ALYDFE ELGF+ G+ + +++ + +W+ G L+ + G FP YV ++
Sbjct: 4 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPMM 57
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 93.4 bits (233), Expect = 1e-27
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 18 APCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 73
+P C ALY ++ ++ EL F D I ++ W+ G L G+ G FP YV +
Sbjct: 5 SPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTKI 60
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 93.0 bits (232), Expect = 2e-27
Identities = 15/58 (25%), Positives = 26/58 (44%)
Query: 18 APCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVP 75
L+ F PE EL G+ + ++ + ++NW NG+ G P Y++ V
Sbjct: 7 GEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPVSG 64
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 92.7 bits (231), Expect = 3e-27
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 18 APCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 73
A ++F+ N EL F +GD I + + W+EG+ NGRTG+FP YV+ +
Sbjct: 4 GSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI 59
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 93.2 bits (232), Expect = 3e-27
Identities = 20/58 (34%), Positives = 37/58 (63%)
Query: 20 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVPLP 77
ALYD++ ++P E+ K+GD +TL+N +++W++ +N R G+ P YV+ + P
Sbjct: 4 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQ 61
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 93.1 bits (232), Expect = 3e-27
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 10 GRTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNR-VDENWYEGSLNGRTGYFPVT 68
G + A YDF+ EL FK GD + ++N D+NWY+ LNG+ G+ P
Sbjct: 1 GSRRASVGSMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKN 60
Query: 69 YVQVVVPLP 77
Y++ + P P
Sbjct: 61 YIE-MKPHP 68
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 92.3 bits (230), Expect = 5e-27
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 21 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVP 75
C L+++ P+N EL K GD I + V+E W+ G+LN + G FP +V+ +
Sbjct: 4 CKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELEL 58
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 92.4 bits (230), Expect = 5e-27
Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 11 RTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDE--NWYEGSLNGRTGYFPVT 68
R +N+ TALY FE + PG+L F+ GD IT++++ D +W+EG L G+TG FP
Sbjct: 10 RVGNLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPAN 69
Query: 69 YVQV 72
YV +
Sbjct: 70 YVTM 73
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus}
Length = 68
Score = 91.9 bits (229), Expect = 6e-27
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 16 NKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 73
+ C + + P+N EL K GD I ++ V+E W+EG LNG+TG FP +++ +
Sbjct: 5 SSGRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKEL 62
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 92.0 bits (229), Expect = 7e-27
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 16 NKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 73
+ A+YD+ + EL F+EG I ++ + D+ WYEG +NG TG FP YV+ +
Sbjct: 15 SYLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESI 72
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 91.5 bits (228), Expect = 8e-27
Identities = 24/56 (42%), Positives = 33/56 (58%)
Query: 18 APCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 73
ALYD++ + EL FKEGDTI + + W+EG LNG+ G+ P YVQ +
Sbjct: 3 GIQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI 58
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 91.1 bits (227), Expect = 1e-26
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 19 PCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSL--NGRTGYFPVTYVQVV 73
P TA YD++ EL F E D I + VD++W+ G L +G G FP YV +
Sbjct: 1 PWATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG 57
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 91.2 bits (227), Expect = 1e-26
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 17 KAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVPL 76
ALY + PG+L F EG+ I + + D W+ GS+ R+G FP YV+
Sbjct: 7 GGEEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKPKDSG 65
Query: 77 P 77
P
Sbjct: 66 P 66
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 90.8 bits (226), Expect = 2e-26
Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 19 PCCTALYDFEPENPGELGFKEGDTITLMNR--VDENWYEGSLNGRTGYFPVTYVQVV 73
C ++ +E +N EL KEGD +TL+N+ +D W+EG LNGR G FP +V+++
Sbjct: 8 DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLL 64
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 90.9 bits (226), Expect = 2e-26
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 16 NKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVP 75
+ AL + + L F + D IT++ + ENW+ G ++G G+FP +YV+++
Sbjct: 8 VENLKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKIIPG 66
Query: 76 LP 77
Sbjct: 67 SE 68
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics,
SH3 domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 90.8 bits (226), Expect = 2e-26
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 16 NKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVP 75
+ A ++F+ N EL +GD I + + W+EG+LNGRTG+FP YV+ +
Sbjct: 8 SHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKS 67
Query: 76 LP 77
Sbjct: 68 SE 69
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 90.9 bits (226), Expect = 2e-26
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 17 KAPCCTALYDFEPENPGELGFKEGDTITLMNRVDEN-WYEGSLNGRTGYFPVTYVQVVVP 75
A AL D+ + L FK D IT+ + EN W+ G LNG+ G FPV +V++++
Sbjct: 9 FAKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEILLS 68
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 89.1 bits (222), Expect = 5e-26
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 20 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 73
+D++ ++ EL G+ IT + + D W+EG +NGR G FP +V+ +
Sbjct: 3 EAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREI 56
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 89.3 bits (222), Expect = 9e-26
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 21 CTALYDFEPENPGELGFKEGDTITLMNRVDEN---WYEGSLNGRTGYFPVTYVQVVVPLP 77
ALYD E+P EL F++GD +T++ + + W+ SL+GR G P ++++V +
Sbjct: 6 AKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILVGMY 65
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 88.8 bits (221), Expect = 1e-25
Identities = 13/57 (22%), Positives = 24/57 (42%)
Query: 17 KAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 73
A+ D+ + +L F G+ I ++ + +W+ G G GY P +V
Sbjct: 6 SGEEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGKH 62
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 88.5 bits (220), Expect = 2e-25
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 16 NKAPCCTALYDFEPENPGELGFKEGDTITLMNR---VDENWYEGSLNGRTGYFPVTYVQV 72
+ ALYD+E + EL F EG I ++N+ D+ ++EG NGR G FP V+
Sbjct: 6 SGVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEE 65
Query: 73 VVPLP 77
+ P
Sbjct: 66 LSSGP 70
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 88.2 bits (219), Expect = 2e-25
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 16 NKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNG---RTGYFPVTYVQV 72
NK +YD + +N EL F EG+ I + D+ W+ G + G R G FPV++V +
Sbjct: 8 NKVRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHI 67
Query: 73 VVP 75
+
Sbjct: 68 LSD 70
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 87.7 bits (218), Expect = 4e-25
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 17 KAPCCTALYDFEPENPGELGFKEGDTITLMNR---VDENWYEGSLNGRTGYFPVTYVQVV 73
ALYD P+ EL F GD +T++ + E W++ L+GR G P +Q++
Sbjct: 6 SGLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQIL 65
Query: 74 VP 75
Sbjct: 66 SG 67
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 86.2 bits (214), Expect = 1e-24
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 17 KAPCCTALYDFEPENPGELGFKEGDTITLMNRV--DENWYEGSLNGRTGYFPVTYVQVVV 74
A Y+F + EL +EGD + + +R+ D+ W++G NGR G+FP TYV+
Sbjct: 6 SGGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEEG 65
Query: 75 P 75
Sbjct: 66 I 66
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 86.2 bits (214), Expect = 1e-24
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 21 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS--LNGRTGYFPVTYVQVVVP 75
ALYDFEPEN EL EGD + + + + W +TG P +V + P
Sbjct: 8 AVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQP 64
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 81
Score = 85.9 bits (213), Expect = 3e-24
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Query: 5 SPVRQGRTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNR--VDENWYEGSLNGRT 62
+ LYD++ N EL + IT+ + +D +W G +
Sbjct: 4 GSSGLNDLKESSNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQK 63
Query: 63 GYFPVTYVQVVVPLP 77
G P+TY++++ P
Sbjct: 64 GKVPITYLELLNSGP 78
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 91.6 bits (226), Expect = 3e-24
Identities = 27/69 (39%), Positives = 44/69 (63%)
Query: 9 QGRTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVT 68
QG + AP AL+DF + EL FK GD I L++R++++W EG++ G TG FP++
Sbjct: 165 QGNSVDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLS 224
Query: 69 YVQVVVPLP 77
+V+++ P
Sbjct: 225 FVKILKDFP 233
Score = 34.2 bits (77), Expect = 0.001
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 3/36 (8%)
Query: 34 ELGFKEGDTITLMNRVDENWYEG---SLNGRTGYFP 66
EGD + L++ D L + FP
Sbjct: 288 NYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFP 323
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 84.9 bits (211), Expect = 3e-24
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 19 PCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSL--NGRTGYFPVTYVQVV 73
ALYDFEPEN EL EGD + + + + W +TG P +V +
Sbjct: 2 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYI 58
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma
1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus}
PDB: 1ywp_A 1ywo_A
Length = 61
Score = 85.0 bits (211), Expect = 3e-24
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 19 PCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTG-YFPVTYVQVVV 74
AL+D++ + EL F + I + + D W+ G G+ +FP YV+ ++
Sbjct: 4 SAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEMI 60
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 84.6 bits (210), Expect = 4e-24
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 18 APCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 73
A ALYD+ +NP EL GD + ++ ++ W+ NG+ G+ P +Y++ +
Sbjct: 8 AQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKL 63
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 84.6 bits (210), Expect = 5e-24
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 21 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEG-SLNGRTGYFPVTYVQVV 73
AL+DF + +L FK+GD + + ++ +E W+ G+ G PV YV+
Sbjct: 6 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 59
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 84.2 bits (209), Expect = 6e-24
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 19 PCCTALYDFEPENPGELGFKEGDTITLMNR--VDENWYEGSLNGRTGYFPVTYVQVV 73
C L+ + N EL F+EG+ I L+++ + W++G LNG+ G FP + +
Sbjct: 7 EYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQI 63
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 72
Score = 83.8 bits (208), Expect = 1e-23
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 21 CTALYDFEPENPGELGFKEGDTITLMNRVDE-NWYEGSLNGRTGYFPVTYVQVV 73
ALY + E+ EL F G ++ E W EG+LNG+TG P YV+ +
Sbjct: 13 AKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFL 66
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 84.1 bits (208), Expect = 1e-23
Identities = 16/66 (24%), Positives = 29/66 (43%)
Query: 12 TPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 71
+ + +++ E EL +G + +M + + W+ GS NG+ G+FP YV
Sbjct: 11 ERLYDLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVT 70
Query: 72 VVVPLP 77
P
Sbjct: 71 EEGDSP 76
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 83.4 bits (207), Expect = 1e-23
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 17 KAPCCTALYDFEPENPGELGFKEGDTITLMNRVDEN-WYEGSLN-GRTGYFPVTYVQVV 73
K ALYD++ + EL FK GD +T + DE W G L+ G+ G +P YV+ +
Sbjct: 2 KGVRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI 60
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding
protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A
1neb_A 3i35_A
Length = 64
Score = 83.0 bits (206), Expect = 2e-23
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 19 PCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLN--GRTGYFPVTYVQVV 73
A+YD+ ++ E+ F++GD I + +D+ W G++ GRTG P Y++ V
Sbjct: 7 RTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFV 63
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 82.6 bits (205), Expect = 2e-23
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 23 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEG-SLNGRTGYFPVTYVQ 71
AL+DF + +L FK+GD + + ++ +E W+ G+ G PV YV+
Sbjct: 6 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 55
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 84.1 bits (208), Expect = 3e-23
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 22 TALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRT---GYFPVTYVQVVVPLP 77
LYDF+ E EL G+ + + + W+ GR G PV +V ++
Sbjct: 9 IVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIIDIAT 67
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 82.8 bits (205), Expect = 3e-23
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 23 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVP 75
L + E+ K+GD +TL+N +++W++ +N R G+ P YV+ +
Sbjct: 5 PLPPYSAG-GREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDS 56
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 81.8 bits (203), Expect = 5e-23
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 21 CTALYDFEPENPGELGFKEGDTITLMNRVDEN-WYEGSLNGRTGYFPVTYVQ 71
A+Y +E + E+ GD IT++ D + W G +G G FP +Y +
Sbjct: 3 MEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK 54
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 85
Score = 82.1 bits (203), Expect = 7e-23
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 18 APCCTALYDFEPENPGELGFKEGDTITLMNR--VDENWYEGSLNGRTGYFPVTYVQVVVP 75
+ AL + +N L F GD I L+ ++ W GS GR+G FP VQ
Sbjct: 8 SGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPAAA 67
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3,
signaling protein; NMR {Homo sapiens}
Length = 67
Score = 81.2 bits (201), Expect = 9e-23
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 16 NKAPCCTALYDFEPE--NPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 73
N + P + L + G+ + + +EG NG+ G+FP T+V+++
Sbjct: 4 NGPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLL 63
Query: 74 VP 75
Sbjct: 64 DQ 65
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 81.2 bits (201), Expect = 1e-22
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 15 VNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSL-NGRTGYFPVTYVQVV 73
V+ AP ALYD+ EL GD I + + +E+W+ GS+ G+ GYFP +V
Sbjct: 3 VDTAPTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASE 62
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 80.4 bits (199), Expect = 2e-22
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 21 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTG-YFPVTYVQVVVP 75
AL+D++ + EL F + I + + + W+ G G+ +FP YV+ +V
Sbjct: 9 VKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVN 64
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 80.0 bits (198), Expect = 4e-22
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 16 NKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGR-TGYFPVTYVQVV 73
+ ALYD++ + EL F G I +++ W++G R YFP YV+ +
Sbjct: 5 SSGRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDI 63
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 70
Score = 79.6 bits (197), Expect = 6e-22
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 18 APCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSL--NGRTGYFPVTYVQVV 73
A+Y + P+N EL +EGD + +M + D+ W+ G + G FP YV V
Sbjct: 7 GTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPV 64
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 78.8 bits (195), Expect = 7e-22
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 23 ALYDFEPENPGELGFKEGDTITLMNRVDE-NWYEGSLNGRTGYFPVTYVQVV 73
YD++ + EL + G+ I + ++ E W EG LNGR G FP +V+ +
Sbjct: 6 VEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEI 57
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 79.3 bits (196), Expect = 8e-22
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 20 CCTALYDFEPE--NPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVP 75
A+ P + L + GD + + +EG +NGR G FP T+V++ P
Sbjct: 3 FAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDP 60
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 79.0 bits (195), Expect = 9e-22
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 10 GRTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTY 69
G + +A + P + L K+GD I ++++ + G LN + G F Y
Sbjct: 4 GSSGFCGRA-RVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIY 62
Query: 70 VQVVVPLP 77
V V+ P
Sbjct: 63 VDVLSSGP 70
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR
{Homo sapiens}
Length = 88
Score = 79.4 bits (196), Expect = 1e-21
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 5 SPVRQGRTPVVNKAP-CCTALYDFEPE--NPGELGFKEGDTITLMNRVDENWYEGSLNGR 61
S G P P A+ P + L + GD + + +EG +NGR
Sbjct: 2 SSGSSGPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGR 61
Query: 62 TGYFPVTYVQVVVP 75
G FP T+V++ P
Sbjct: 62 KGLFPFTHVKIFDP 75
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN
structural genomics consortium, SGC; 2.00A {Homo
sapiens}
Length = 89
Score = 79.1 bits (195), Expect = 1e-21
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 1 SPLPSPVRQGRTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNR-----VDENWYE 55
+ P TA++D+E EL + GD + ++++ DE W+
Sbjct: 12 DLGTENLYFQSMGTTPAGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWT 71
Query: 56 GSL-NGRTGYFPVTYVQ 71
G L +GR G FP YV
Sbjct: 72 GQLPSGRVGVFPSNYVA 88
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 71
Score = 77.7 bits (192), Expect = 3e-21
Identities = 11/57 (19%), Positives = 28/57 (49%)
Query: 17 KAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 73
+ + ++ E+GF++G T+ ++ + E W+ G+ G+ P +Y++
Sbjct: 7 GEEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKA 63
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 77.7 bits (192), Expect = 3e-21
Identities = 10/59 (16%), Positives = 27/59 (45%)
Query: 19 PCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVPLP 77
+ +++ + EL + G+ + ++ + + W+ S + G+ P TY++ P
Sbjct: 9 EQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNSGP 67
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 77.3 bits (191), Expect = 4e-21
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 21 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNG-----RTGYFPVTYVQV 72
A + ++ + +L F++ I + + D WY G G FP ++V V
Sbjct: 10 VVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAV 66
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 77.3 bits (191), Expect = 5e-21
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 18 APCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEG--SLNGRTGYFPVTYVQVV 73
AL+ + P EL ++G+ I ++ + + W +G L GRTG FP YV V
Sbjct: 7 GNMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPV 64
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 77.4 bits (191), Expect = 6e-21
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 10 GRTPVVNKAPC--CTALYDFEPENPGELGFKEGDTITLMNRV-DENWYEGSLN--GRTGY 64
GR P AP C + PGEL F++GD +T++ +++WY + G+ G
Sbjct: 7 GRMPTRRWAPGTQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGL 66
Query: 65 FPVTYVQ 71
++
Sbjct: 67 LAAGALR 73
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 79.0 bits (194), Expect = 6e-21
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 17 KAPCCTALYDFEPENPGELGFKEGDTITLMNR-VDENWYEGSLNGRTGYFPVTYVQVVVP 75
A YDF + EL KEGD I ++N+ + W+ G + GR G+FP YV+
Sbjct: 4 TFGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYS 63
Score = 25.4 bits (55), Expect = 1.9
Identities = 3/25 (12%), Positives = 6/25 (24%)
Query: 21 CTALYDFEPENPGELGFKEGDTITL 45
Y + GE + +
Sbjct: 105 VFKQYANDNGVDGEWTYDDATKTFT 129
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3
domain, phosphorylation; NMR {Mus musculus} SCOP:
b.34.2.1
Length = 67
Score = 76.9 bits (190), Expect = 6e-21
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 23 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEG-SLNGRTGYFPVTYVQVVVPL 76
A+YDF+ +L + G ++ + D +W+ G GY P YV
Sbjct: 7 AMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKKSN 61
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 77.5 bits (191), Expect = 7e-21
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 21 CTALYDFEPENPGELGFKEGDTITLMNRV--DENWYEGSLNGRTGYFPVTYVQVVVP 75
ALY FE N E+ F GD I + + + W GS G G+FP YV+ +
Sbjct: 8 YRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPS 64
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 76.9 bits (190), Expect = 7e-21
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 21 CTALYDFEPENPGELGFKEGDTITLMNRV-DENWYEGSL-NGRTGYFPVTYVQVV 73
C A Y+F +L F +GD +T++ D NWY+ GR G P YVQ
Sbjct: 14 CIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKR 68
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 76.9 bits (190), Expect = 7e-21
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 9 QGRTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRV--DENWYEG-SLNGRTGYF 65
QG V++ LY F EL F++G+T+ ++ + D W++ + G+ G
Sbjct: 1 QGS-RVLHVV---QTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLV 56
Query: 66 PVTYVQVVVPLP 77
P YV V+ P
Sbjct: 57 PKNYVVVLSDGP 68
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 76.6 bits (189), Expect = 7e-21
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 32 PGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVPLP 77
P E+ K+GD +TL+N +++W++ +N R G+ P YV+ +
Sbjct: 3 PREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGT 48
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A
2kr3_A
Length = 65
Score = 76.2 bits (188), Expect = 9e-21
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 8/59 (13%)
Query: 23 ALYDFEPENPGELGFKEGDTITLMNRVDENWYE--------GSLNGRTGYFPVTYVQVV 73
ALYD++ ++P E+ K+GD +TL+N +++W++ G R G+ P YV+ +
Sbjct: 6 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKL 64
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 76.1 bits (188), Expect = 9e-21
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 12 TPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSL-NGRTGYFPVTYV 70
+ ++ ALYD+ P N +L ++GD ++ + W+ NG+ GY P YV
Sbjct: 2 SMSTSELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYV 61
Query: 71 QVVVP 75
Sbjct: 62 TEAED 66
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 75.8 bits (187), Expect = 1e-20
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 12 TPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEG-SLNGRTGYFPVTYV 70
+ + A+ DF + G+L FK+G+ + ++ + + W+ G G P TY+
Sbjct: 4 SHKWSTGEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYL 63
Query: 71 QVV 73
+
Sbjct: 64 EPY 66
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like
protein; SH3, EPS8, EPS8L2, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 75.8 bits (187), Expect = 1e-20
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 21 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 73
LYDF N EL + + + ++ + W S +G+ GY P +
Sbjct: 10 VKILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVPCNILGEA 62
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 75.9 bits (187), Expect = 2e-20
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 16 NKAPCCTALYDFEPENP-------GELGFKEGDTITLMNRVDEN-WYEGSLNGRTGYFPV 67
+ ALYD++P EL F GD IT+ +DE+ +Y G LNG+ G P
Sbjct: 5 SSGRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPS 64
Query: 68 TYVQVV 73
+++ V
Sbjct: 65 NFLEEV 70
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein
3, protein-protein interaction, structural genomics;
NMR {Homo sapiens}
Length = 68
Score = 75.7 bits (187), Expect = 2e-20
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 21 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 73
LY+FE NP EL +G+ + +++ W + GR+GY P ++ +
Sbjct: 10 MQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSNILEPL 62
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 75.5 bits (186), Expect = 2e-20
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 12 TPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVD----ENWYEGSLNGRTGYFPV 67
A+Y F+ NP EL + ++ D W+ +NG+ GY P
Sbjct: 7 GSEAEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPS 66
Query: 68 TYVQVVVPLP 77
Y++ P
Sbjct: 67 NYIRKTESGP 76
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 75.6 bits (186), Expect = 3e-20
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
Query: 5 SPVRQGRTPVVNKAPCCT--ALYDFEPENPGELGFKEGDTITLMNRVDEN----WYEGSL 58
S G + A YDF + E+ F+ GD + L + + W SL
Sbjct: 2 SSGSSGTNWASGEDDHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASL 61
Query: 59 NGR-TGYFPVTYVQVVVPLP 77
+G+ TG P YV+++
Sbjct: 62 DGQTTGLIPANYVKILGKRR 81
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 75.6 bits (186), Expect = 4e-20
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 1 SPLPSPVRQGRTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRV--DENWYEG-S 57
S + V++ LY F EL F++G+T+ ++ + D W++ +
Sbjct: 3 SGSSGLSNGQGSRVLHVV---QTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKN 59
Query: 58 LNGRTGYFPVTYVQVVVPLP 77
G+ G P YV V+ P
Sbjct: 60 ARGQVGLVPKNYVVVLSDGP 79
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain,
NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens}
SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B
Length = 193
Score = 78.1 bits (192), Expect = 5e-20
Identities = 16/72 (22%), Positives = 30/72 (41%)
Query: 2 PLPSPVRQGRTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGR 61
PL SP A+ + E+ EG+ + +++++ + W+ +
Sbjct: 65 PLDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDV 124
Query: 62 TGYFPVTYVQVV 73
TGYFP Y+Q
Sbjct: 125 TGYFPSMYLQKS 136
Score = 77.7 bits (191), Expect = 5e-20
Identities = 10/66 (15%), Positives = 29/66 (43%)
Query: 12 TPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 71
+P A+ D+E + E+ GD + ++ + + W+ + + G+ P ++++
Sbjct: 5 SPEFIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLE 64
Query: 72 VVVPLP 77
+
Sbjct: 65 PLDSPD 70
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 74.6 bits (184), Expect = 5e-20
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 11 RTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEG--SLNGRTGYFPVT 68
RT ALYD+E +L F +G+ ++N + +W+E G TGY P
Sbjct: 8 RTRGGTGVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSN 67
Query: 69 YVQVV 73
YV V
Sbjct: 68 YVAPV 72
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 74.3 bits (183), Expect = 6e-20
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Query: 17 KAPCCTALYDFEPENP-GELGFKEGDTITLMNRVD-----ENWYEGSL-NGRTGYFPVTY 69
ALYDF PENP E+ K+GD + ++++ D +W++ NG GY P Y
Sbjct: 6 HHHFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNY 65
Query: 70 VQVV 73
++++
Sbjct: 66 IEII 69
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 79.8 bits (195), Expect = 1e-19
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 13 PVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDEN-WYEGSL-NGRTGYFPVTYV 70
ALYD+E + EL FK GD +T M DE W +G L NG+ G +P YV
Sbjct: 423 ATSGTEVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYV 482
Query: 71 QVV 73
+ +
Sbjct: 483 EAI 485
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C
4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A
1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C
1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 73.6 bits (181), Expect = 2e-19
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 23 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEG--SLNGRTGYFPVTYVQVV 73
ALYD+ +L F +G+ ++ +W+E G TGY P YV V
Sbjct: 11 ALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPV 63
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold
protein 1, islet-brain-1, IB-1, mitogen-activated P
kinase 8-interacting protein 1; 3.00A {Rattus
norvegicus}
Length = 71
Score = 73.1 bits (180), Expect = 2e-19
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 19 PCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS--LNGRTGYFPVTYVQVVVPL 76
A++ F P + EL + D + + + ++ WYE G G FP Y V
Sbjct: 7 QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTKE 66
Query: 77 P 77
P
Sbjct: 67 P 67
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 73.2 bits (180), Expect = 2e-19
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 16 NKAPCCTALYDFEPENPG-ELGFKEGDTITLMNRVD------ENWYEGSLNGRTGYFPVT 68
+K ALYDF PENP E+ K+GD + ++++ D + W + NG GY P
Sbjct: 12 SKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYN 71
Query: 69 YVQVV 73
Y++++
Sbjct: 72 YIEII 76
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 73.2 bits (180), Expect = 2e-19
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 2 PLP-SPVRQGRTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEG-SLN 59
PLP +P R+ + ALYD++ +P EL + + L++ + +W+ N
Sbjct: 3 PLPPTPEDNRRSFQEPEETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKN 62
Query: 60 GRTGYFPVTYVQ 71
G GY P +Y+
Sbjct: 63 GHEGYAPSSYLV 74
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 74.2 bits (182), Expect = 3e-19
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 22 TALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRT---GYFPVTYVQVV 73
LY+F+ E EL G+ +++ D W+ R G PV+YV+++
Sbjct: 7 VTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRII 61
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 72.8 bits (179), Expect = 3e-19
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 23 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEG--SLNGRTGYFPVTYVQVV 73
ALYD+E +L F +G+ ++N + +W+E G TGY P Y+ V
Sbjct: 10 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPV 62
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 72.8 bits (179), Expect = 4e-19
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 1 SPLPSPVRQGRTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEG-SLN 59
P+ + VV ALYD++ +P EL + + L++ + +W+ N
Sbjct: 8 EDNRRPLWEPEETVV------IALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRN 61
Query: 60 GRTGYFPVTYVQVVVP 75
G GY P +Y+ P
Sbjct: 62 GHEGYVPSSYLVEKSP 77
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 72.5 bits (178), Expect = 8e-19
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 1 SPLPSPVRQGR-TPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEG--S 57
S S V T + ALYD+E +L FK+G+ ++N + +W+E
Sbjct: 9 SSSFSVVSSSYPTGLTGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSI 68
Query: 58 LNGRTGYFPVTYVQVVVPLP 77
G++GY P YV +
Sbjct: 69 ATGKSGYIPSNYVVPADSIQ 88
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 71.7 bits (176), Expect = 9e-19
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 8/65 (12%)
Query: 17 KAPCCTALYDFEPENP-------GELGFKEGDTITLMNRVDEN-WYEGSLNGRTGYFPVT 68
A D++P + G L + GD + + +D+ +Y G L G G P
Sbjct: 6 SGKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAH 65
Query: 69 YVQVV 73
+ +
Sbjct: 66 LLDHM 70
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 71.0 bits (175), Expect = 9e-19
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 21 CTALYDFEPENPGELGFKEGDTITLMN-RVDENWYEGSL--NGRTGYFPVTYVQVV 73
YDF E+ EL K GD + +++ + ++W+ L +G++G P +++ V
Sbjct: 5 GIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV 60
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel
beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP:
b.34.2.1 PDB: 1n5z_A
Length = 92
Score = 71.8 bits (176), Expect = 1e-18
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 16 NKAPCCTALYDFEPENP-GELGFKEGDTITLMNRVD-----ENWYEGSL-NGRTGYFPVT 68
+K ALYDF PENP E+ K+GD + ++++ D +W++ NG GY P
Sbjct: 12 SKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYN 71
Query: 69 YVQVVVPLP 77
Y++++
Sbjct: 72 YIEIIKRRK 80
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton,
phosphorylation, SH3 domain, DNA damage, DNA repair,
nucleus; NMR {Saccharomyces cerevisiae}
Length = 71
Score = 71.1 bits (175), Expect = 1e-18
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 21 CTALYDFEPENPGELGFKEGDTITLMN-RVDENWYEGSL--NGRTGYFPVTYVQVV 73
YDF E+ EL K GD + +++ + ++W+ L +G++G P +++ V
Sbjct: 9 GIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV 64
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 70.9 bits (174), Expect = 2e-18
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 21 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGR-----TGYFPVTYVQVVVP 75
+ +L G I ++ + W++G L R G+FP ++V+++ P
Sbjct: 10 AQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGP 69
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein
1; IRTKS-SH3, espfu, complex structure, protein
binding; NMR {Homo sapiens}
Length = 67
Score = 70.4 bits (173), Expect = 2e-18
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 16 NKAPCCTALYDFEP-ENPGELGFKEGDTITLMNR-VDENWYEGSL--NGRTGYFPVTYVQ 71
K ++ N L F +GD ITL+ + W G + G+FP +Y +
Sbjct: 4 MKKQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTK 63
Query: 72 VV 73
++
Sbjct: 64 LL 65
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 70.2 bits (172), Expect = 2e-18
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 20 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVV 74
+ + E EL G +T+M + W+ GS NG+ G+FP YV V
Sbjct: 3 PAFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVLEEV 57
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 70.1 bits (172), Expect = 3e-18
Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 4 PSPVRQGRTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLN 59
+ V++ + ALYD++ ++P E+ K+GD +TL+N +++W++ +N
Sbjct: 9 AAYVKKLDSG--TGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVN 62
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 70.3 bits (172), Expect = 3e-18
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 30 ENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVP 75
P E+ K+GD +TL+N +++W++ +N R G+ P YV+ +
Sbjct: 3 MGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDS 48
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 70.0 bits (172), Expect = 3e-18
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 13 PVVNKAPCCTALYDFEP-ENPGELGFKEGDTITLMN-RVDENWYEGSL--NGRTGYFPVT 68
P+ + A++ +N L FKEGD ITL+ + W+ G G+FP +
Sbjct: 2 PLGSGRMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFS 61
Query: 69 YVQVV 73
Y +V+
Sbjct: 62 YTRVL 66
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 70.0 bits (172), Expect = 3e-18
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 17 KAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSL-NGRTGYFPVTYVQVV 73
+ ALY ++ +P +L FK+G+ + ++ E W SL + G+ P YV +
Sbjct: 6 QGDIVVALYPYDGIHPDDLSFKKGEKMKVLEEHGEWWKAKSLLTKKEGFIPSNYVAKL 63
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 77
Score = 70.0 bits (172), Expect = 4e-18
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 10 GRTPVVNKAPCCTALYDFEPE-NPGELGFKEGDTITLMNR-VDENWYEGSL-NGRTGYFP 66
G + A +YDF E EL EG+ IT+ N V W EG G G P
Sbjct: 1 GSSGSSGMATKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVP 60
Query: 67 VTYVQVV 73
YV+++
Sbjct: 61 TDYVEIL 67
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 69.7 bits (171), Expect = 4e-18
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 13 PVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLN-----GRTGYFPV 67
+ P L+DF+ EL F+ GD + + ++ W+ L+ GY P
Sbjct: 5 DQAHLGPKYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPH 64
Query: 68 TYVQVV 73
Y+
Sbjct: 65 NYLAER 70
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C*
2o88_A 1bbz_A 1awo_A
Length = 63
Score = 69.5 bits (171), Expect = 4e-18
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 23 ALYDFEPENPGELGFKEGDTITLMNR-VDENWYEGSLNGRTGYFPVTYVQVV 73
ALYDF L +G+ + ++ + W E G+ P Y+ V
Sbjct: 10 ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPV 61
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 69.9 bits (171), Expect = 4e-18
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 21 CTALYDFE-PENPGELGFKEGDTITLMNRVDENWYEGSLNG------RTGYFPVTYVQVV 73
AL DF +P L + GD IT++ + + ++G ++ R GYFP V+VV
Sbjct: 21 VRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVV 80
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 69.8 bits (171), Expect = 6e-18
Identities = 7/57 (12%), Positives = 19/57 (33%)
Query: 21 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVPLP 77
++ E+ F G + ++ + + W+ G+ P Y+ +
Sbjct: 11 YMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDENEQ 67
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 69.2 bits (170), Expect = 6e-18
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 21 CTALYDFEPENPGELGFKEGDTITLMNR-VDENWYEGSL-NGRTGYFPVTYVQVV 73
C A+Y FE + G + EG+ ++LM + W G GY P +Y++V
Sbjct: 10 CVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRVT 64
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 68.7 bits (169), Expect = 7e-18
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 19 PCCTALYDFEPENPGELGFKEGDTITLMNRVDENW---YEGSLNGRTGYFPVTYVQV 72
LY + ++ E+ GD I+L+ R + G TG P TY+++
Sbjct: 2 MENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI 58
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 72.1 bits (176), Expect = 7e-18
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 21 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEG-SLNGRTGYFPVTYVQV 72
+ F E +L F++G+ + ++++ +++W+E + G TG P YVQ+
Sbjct: 121 VVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQI 173
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 69.7 bits (171), Expect = 7e-18
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 22 TALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSL-NGRTGYFPVTYVQVVVPL 76
ALYD+ +P +L F++GD + ++ E W SL + GY P YV V
Sbjct: 7 VALYDYVSWSPDDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVDSG 62
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 73.7 bits (180), Expect = 9e-18
Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 21 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEG-SLNGRTGYFPVTYVQVVVP 75
+ F E +L F++G+ + ++++ +++W+E + G TG P YVQ+ +
Sbjct: 150 VVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQME 205
Score = 70.2 bits (171), Expect = 2e-16
Identities = 16/73 (21%), Positives = 29/73 (39%)
Query: 1 SPLPSPVRQGRTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNG 60
S S P + T +P +L K+G T+ + ++ Y+ L+G
Sbjct: 232 SASTSSDNIELQPRLPAKAKVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAELDG 291
Query: 61 RTGYFPVTYVQVV 73
+ G P TY++
Sbjct: 292 QIGSVPHTYLRFT 304
Score = 29.8 bits (66), Expect = 0.057
Identities = 5/42 (11%), Positives = 8/42 (19%)
Query: 25 YDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFP 66
Y E I ++ + FP
Sbjct: 78 YSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFP 119
Score = 26.7 bits (58), Expect = 0.79
Identities = 3/23 (13%), Positives = 6/23 (26%)
Query: 49 VDENWYEGSLNGRTGYFPVTYVQ 71
V + S+ G +
Sbjct: 15 VPRGSHMASMTGGQQMTTNGFDP 37
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 69.0 bits (169), Expect = 9e-18
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 9/63 (14%)
Query: 18 APCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEG---------SLNGRTGYFPVT 68
AL+D++ +L F+ GD + +++ E W+ GY P
Sbjct: 7 GQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSN 66
Query: 69 YVQ 71
YV
Sbjct: 67 YVA 69
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels,
signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP:
b.34.2.1 PDB: 1h92_A 1kik_A
Length = 62
Score = 68.5 bits (168), Expect = 9e-18
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 17 KAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWY-EGSLNGRTGYFPVTYVQ 71
+ AL+ +EP + G+LGF++G+ + ++ + E W + G+ G+ P +V
Sbjct: 5 QDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVA 60
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 69.5 bits (170), Expect = 1e-17
Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 11/80 (13%)
Query: 5 SPVRQGRTPVVNKAPC--CTALYDFEPENP--------GELGFKEGDTITLMNRVDEN-W 53
S G P + P AL+D++P EL FKEG I + D + +
Sbjct: 2 SSGSSGTDPGAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGF 61
Query: 54 YEGSLNGRTGYFPVTYVQVV 73
Y G R G P V +
Sbjct: 62 YRGETCARLGLIPCNMVSEI 81
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 73.1 bits (178), Expect = 2e-17
Identities = 11/75 (14%), Positives = 24/75 (32%)
Query: 1 SPLPSPVRQGRTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNG 60
+ + L + G+ + + +EG NG
Sbjct: 222 AQPSVNTPLPNLQNGPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNG 281
Query: 61 RTGYFPVTYVQVVVP 75
+ G+FP T+V+++
Sbjct: 282 KRGHFPFTHVRLLDQ 296
Score = 60.4 bits (145), Expect = 7e-13
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 16 NKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEG-SLNGRTGYFPVTYVQVVV 74
+A AL+DF + +L FK+GD + + ++ +E W+ G+ G PV YV+
Sbjct: 132 EEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYR 191
Query: 75 P 75
P
Sbjct: 192 P 192
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 72.0 bits (175), Expect = 4e-17
Identities = 17/75 (22%), Positives = 27/75 (36%)
Query: 1 SPLPSPVRQGRTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNG 60
SP + T + L + GD + + +EG +NG
Sbjct: 222 SPGAAITPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNG 281
Query: 61 RTGYFPVTYVQVVVP 75
R G FP T+V++ P
Sbjct: 282 RKGLFPFTHVKIFDP 296
Score = 60.4 bits (145), Expect = 8e-13
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 16 NKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEG-SLNGRTGYFPVTYVQVVV 74
+ LYDF + +L FK+G+ + ++ + +E W+ + +GR G PV YV+ +V
Sbjct: 123 DNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLV 182
Query: 75 P 75
Sbjct: 183 R 183
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 66.6 bits (163), Expect = 8e-17
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 21 CTALYDFEP-ENPGELGFKEGDTITLMNRVDEN-WYEGSL--NGRTGYFPVTYVQVV 73
++ N L F +GD +TL+ +++ W G G+FP +Y +++
Sbjct: 10 VKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLL 66
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 66.1 bits (162), Expect = 1e-16
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 23 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS--LNGRTGYFPVTYVQVV 73
A++ F P + EL + D + + + ++ WYE G G FP Y V
Sbjct: 8 AIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEV 60
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 69.7 bits (170), Expect = 1e-16
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 1 SPLPSPVRQGRTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNG 60
S + V + AL+DF+P+ GELGF+ GD I +M+ D NW++G+ +G
Sbjct: 141 SRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHG 200
Query: 61 RTGYFPVTYVQVV 73
+TG FP YV V
Sbjct: 201 QTGMFPRNYVTPV 213
Score = 67.8 bits (165), Expect = 7e-16
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 21 CTALYDFEPENPGELGFKEGDTITLMNR-VDENWYEGSLNGRTGYFPVTYVQ 71
A YDF+ EL FK GD + ++N D+NWY+ LNG+ G+ P Y++
Sbjct: 3 AIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIE 54
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 66.2 bits (162), Expect = 1e-16
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 21 CTALYDFEPENPGELGFKEGDTITLMNRVD-ENWYEG-SLNGRTGYFPVTYVQVV 73
C +Y ++ P EL +E + + ++ D E+W + + G+ GY P Y+Q
Sbjct: 16 CKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQFP 70
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 65.7 bits (161), Expect = 1e-16
Identities = 11/53 (20%), Positives = 25/53 (47%)
Query: 21 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 73
+ YDF N EL + D + +++ + W + +G +G+ P + ++
Sbjct: 4 AKSKYDFVARNSSELSVMKDDVLEILDDRRQWWKVRNASGDSGFVPNNILDIM 56
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 66.8 bits (163), Expect = 1e-16
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
Query: 4 PSPVRQGRTPVVNKAPCCTALYDFEP------ENPGELGFKEGDTITLMNRVDEN-WYEG 56
+ K C A Y + P EL G + + +DE+ +YEG
Sbjct: 3 SGSSGTSKQRYSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEG 62
Query: 57 -SLNGRTGYFPVTYVQVV 73
L+G+ G P +V V
Sbjct: 63 ELLDGQRGLVPSNFVDFV 80
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 64.9 bits (159), Expect = 2e-16
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 19 PCCTALYDFEPE-NPGELGFKEGDTITLMNRVDENWYEGSL--NGRTGYFPVTYVQ 71
P A YDF +P EL K+GD I + W G L + G+ P Y++
Sbjct: 1 PMFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMK 56
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 65.9 bits (161), Expect = 2e-16
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 1 SPLPSPVRQGRTPVVNKAP---CCTALYDFEPENPGELGFKEGDTITLMNRVDENWY-EG 56
SP P+ + ALYD+E + +L F++GD + ++ E W
Sbjct: 5 SPGPNSHNSNTPGIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARS 64
Query: 57 SLNGRTGYFPVTYVQVV 73
+ GY P YV V
Sbjct: 65 LATRKEGYIPSNYVARV 81
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 66.0 bits (161), Expect = 2e-16
Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 6/69 (8%)
Query: 11 RTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNR----VDENWYEGS--LNGRTGY 64
R +Y + P+N EL GD I + E W G+ G +G
Sbjct: 9 RDIRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGL 68
Query: 65 FPVTYVQVV 73
P Y+
Sbjct: 69 LPENYITKA 77
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 64.6 bits (158), Expect = 4e-16
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 17 KAPCCTALYDFEPE-NPGELGFKEGDTITLMNRVDENWYEGSL--NGRTGYFPVTYVQVV 73
K P A YDF + EL K+GD + + W L + G+ P Y+
Sbjct: 1 KDPKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPY 60
Query: 74 VP 75
Sbjct: 61 KD 62
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil,
cytoplasm, SH3 domain, signaling protein; NMR {Homo
sapiens} PDB: 2rol_A
Length = 68
Score = 64.6 bits (158), Expect = 4e-16
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 21 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 73
YDF+ N EL K+ D + +++ + W G+ GY P +
Sbjct: 11 VLCNYDFQARNSSELSVKQRDVLEVLDDSRKWWKVRDPAGQEGYVPYNILTPY 63
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 64.6 bits (158), Expect = 4e-16
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 21 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEG-SLNGRTGYFPVTYVQ 71
A +D+ + EL K+ + + L++ + W+ + RTGY P YV+
Sbjct: 7 VIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNAANRTGYVPSNYVE 57
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic
protein NCK2; T-cell receptor, SH3 domain, immunology,
SH2 domain; NMR {Homo sapiens}
Length = 86
Score = 65.2 bits (159), Expect = 4e-16
Identities = 14/71 (19%), Positives = 27/71 (38%)
Query: 1 SPLPSPVRQGRTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNG 60
+ + + A +D+ + EL K+ + + L++ W +
Sbjct: 14 YNSLKKGSLVKNLHMTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNAAN 73
Query: 61 RTGYFPVTYVQ 71
RTGY P YV+
Sbjct: 74 RTGYVPSNYVE 84
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 65.5 bits (159), Expect = 6e-16
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 4 PSPVRQGRTPV-VNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSL---N 59
S G + +K A+Y+F+ +L + GD + + +WY G L
Sbjct: 44 GSSGSSGSSGSSGDKERHGVAIYNFQGSGAPQLSLQIGDVVRIQ-ETCGDWYRGYLIKHK 102
Query: 60 GRTGYFPVTYVQV 72
G FP +++ +
Sbjct: 103 MLQGIFPKSFIHI 115
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 64.3 bits (157), Expect = 7e-16
Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 19 PCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS--LNGRTGYFPVTYVQVV 73
P F + E+ ++ D + ++ + ++ W G +G TG+FP + + +
Sbjct: 18 PQVEITKAFFAKQADEVTLQQADVVLVL-QQEDGWLYGERLRDGETGWFPEDFARFI 73
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2
domain, signaling protein; NMR {Homo sapiens}
Length = 72
Score = 63.9 bits (156), Expect = 8e-16
Identities = 12/64 (18%), Positives = 26/64 (40%)
Query: 13 PVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQV 72
+ + A +D+ + EL K+ + + L++ W + +TG+ P YV+
Sbjct: 2 STMAEEVVVVAKFDYVAQQEQELDIKKNERLWLLDDSKSWWRVRNSMNKTGFVPSNYVER 61
Query: 73 VVPL 76
Sbjct: 62 KNSA 65
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 64.0 bits (156), Expect = 1e-15
Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 8/74 (10%)
Query: 1 SPLPSPVRQGRTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSL-N 59
PLP+P + L D+ + F+ G+ + +++ W SL
Sbjct: 7 GPLPNPEGLDSDFLA-------VLSDYPSPDISPPIFRRGEKLRVISDEGGWWKAISLST 59
Query: 60 GRTGYFPVTYVQVV 73
GR Y P V V
Sbjct: 60 GRESYIPGICVARV 73
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 63.1 bits (154), Expect = 2e-15
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 23 ALYDFE-PENPGELGFKEGDTITLMNRVDENWYEGSL--NGRTGYFPVTYVQVV 73
A+ + + E+ F +GD + N +++ W + G V+ V
Sbjct: 12 AILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEV 65
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane;
2.05A {Saccharomyces cerevisiae}
Length = 70
Score = 62.8 bits (153), Expect = 2e-15
Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 21 CTALYDFE--PENPGELGFKEGDTITLMNRVDENWYEG-SLNGRTGYFPVTYVQVV 73
ALY ++ ++ E+ F++ + + + + ++ W++ NG TG P YVQ++
Sbjct: 8 AKALYPYDADDDDAYEISFEQNEILQVSD-IEGRWWKARRANGETGIIPSNYVQLI 62
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 65.4 bits (159), Expect = 2e-14
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 5 SPVRQGRTPVVNKAP------CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSL 58
P G +N+ C AL+D + ELGFK GD I +M+ + W+ G +
Sbjct: 11 HPGGGGEQLAINELISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRV 70
Query: 59 NGRTGYFPVTYVQ 71
G+FP ++V+
Sbjct: 71 ADGEGWFPASFVR 83
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 62.0 bits (150), Expect = 2e-14
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 15/68 (22%)
Query: 21 CTALYDFEPENPGELGFKEGDTITLMNR-----VDENWYEG----------SLNGRTGYF 65
A +D+ + EL K GD + ++ DE W G L G F
Sbjct: 47 VQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVF 106
Query: 66 PVTYVQVV 73
P + + V
Sbjct: 107 PENFTERV 114
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 63.8 bits (154), Expect = 3e-14
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 19 PCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEG-SLNGRTGYFPVTYVQVVVPL 76
AL+DF + +L FK+GD + + ++ +E W+ G+ G PV YV+ P
Sbjct: 137 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPA 195
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein
complex, DOCK2, ELMO1, SH3 domain, PH domain bundle,
proline-rich sequence, cytoskeleton; 2.10A {Homo
sapiens}
Length = 184
Score = 62.4 bits (151), Expect = 4e-14
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 9/80 (11%)
Query: 1 SPLPSPVRQGRTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSL-- 58
S +P R+ +K A+Y+F+ +L + GD + + +WY G L
Sbjct: 5 SSGMAPWRK-----ADKERHGVAIYNFQGSGAPQLSLQIGDVVRIQ-ETCGDWYRGYLIK 58
Query: 59 -NGRTGYFPVTYVQVVVPLP 77
G FP +++ +
Sbjct: 59 HKMLQGIFPKSFIHIKEVTV 78
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain,
SH2 domain, SRC homology 3, RAS signaling pathway,
proto- oncogene, phosphorylation; 1.5A {Homo sapiens}
PDB: 2j06_A
Length = 65
Score = 58.2 bits (141), Expect = 1e-13
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 23 ALYDFEP-ENPGELGFKEGDTITLMNRVDENWYEGSL--NGRTGYFPVTYVQVV 73
A+ + + E+ F +GD + N +++ W + G V+ V
Sbjct: 10 AILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEV 63
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 56.9 bits (137), Expect = 9e-13
Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 17/71 (23%)
Query: 23 ALYDFEPENPGELGFKEGDTITLMNRV---------------DENWYEGS--LNGRTGYF 65
ALY F E P +L GD + + W G + G F
Sbjct: 16 ALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDF 75
Query: 66 PVTYVQVVVPL 76
P TYV+ + P+
Sbjct: 76 PGTYVEFLGPV 86
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 59.8 bits (145), Expect = 1e-12
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 23 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVP 75
+YD+ +N EL F +G I ++N+ D +W++G ++G+ G FP YV++
Sbjct: 7 GMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTD 59
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 52.5 bits (126), Expect = 3e-11
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 16 NKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENW----YEGSLNGRTGYFPVTYVQ 71
N ++ D+E + GF+EG ++ ++ R W + G+ P Y++
Sbjct: 8 NLKDVYVSIADYEG-DEETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLE 66
Query: 72 VVVPLP 77
P
Sbjct: 67 KKNSGP 72
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 55.2 bits (133), Expect = 6e-11
Identities = 17/77 (22%), Positives = 25/77 (32%), Gaps = 1/77 (1%)
Query: 1 SPLPSPVRQGRTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDE-NWYEGSLN 59
+ S P N ALYDF L +G+ + ++ W E
Sbjct: 26 ARWNSKENLLAGPSENDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTK 85
Query: 60 GRTGYFPVTYVQVVVPL 76
G+ P Y+ V L
Sbjct: 86 NGQGWVPSNYITPVNSL 102
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 54.3 bits (131), Expect = 1e-10
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 21 CTALYDFEPENPGELGFKEGDTITLMNRV-DENWYEGS-LNGRTGYFPVTYVQ 71
C A Y+F +L F +GD +T++ D NWY+ GR G P YVQ
Sbjct: 14 CIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQ 66
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 54.0 bits (130), Expect = 2e-10
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 21 CTALYDFEPENPGELGFKEGDTITLMNRVDENWY--EGSLNGRTGYFPVTYVQVVVPLP 77
ALYD+E +L FK+G+ + ++N + +W+ G+TGY P YV +
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQ 63
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 53.3 bits (128), Expect = 3e-10
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 1 SPLPSPVRQGRTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWY--EGSL 58
S Q P+ ALYD+E +L FK+G+ + ++N + +W+
Sbjct: 68 SSDTVTSPQRAGPLAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLS 127
Query: 59 NGRTGYFPVTYVQVVVPLP 77
G+TGY P YV +
Sbjct: 128 TGQTGYIPSNYVAPSDSIQ 146
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 50.8 bits (121), Expect = 3e-10
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 11/67 (16%)
Query: 21 CTALYDFEPENPGELGFKEGDTITLMN---RVDENWYEGSLNG--------RTGYFPVTY 69
AL D+ + L G + + + ++ GS+ G R GYFP +
Sbjct: 25 AVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSI 84
Query: 70 VQVVVPL 76
V+ L
Sbjct: 85 VREDQTL 91
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor
complex, DOWN-regulated kinase, ordered activation
loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A*
2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 50.9 bits (122), Expect = 2e-09
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 22 TALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSL-NGRTGYFPVTYVQ 71
ALYD+E + +L F++GD + ++ E W SL + GY P YV
Sbjct: 12 VALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVA 62
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 49.9 bits (118), Expect = 4e-09
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 22 TALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSL--NGRTGYFPVTYVQVVV 74
A+Y +P E+ + GD I + + + +G GRTG +P V+ +
Sbjct: 446 IAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKI 500
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3
domain, peptide complex, alternative splicing, disease
mutation, HOST-virus interaction, phosphoprotein,
polymorphism; 1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A
1pnj_A 2pni_A 1pks_A 1pkt_A
Length = 83
Score = 46.6 bits (110), Expect = 7e-09
Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 17/70 (24%)
Query: 23 ALYDFEPENPGELGFKEGDTITLMNRV---------------DENWYEGS--LNGRTGYF 65
ALYD++ E ++ GD +T+ + W G G G F
Sbjct: 10 ALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDF 69
Query: 66 PVTYVQVVVP 75
P TYV+ +
Sbjct: 70 PGTYVEYIGR 79
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 48.0 bits (115), Expect = 2e-08
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 22 TALYDFEPENPGELGFKEGDTITLMNRVDEN---WYEGSLNGRTGYFPVTYV 70
AL+D+EP+N EL KEGD +T+++R DE+ W+ LN + GY P +
Sbjct: 174 YALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLL 225
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 43.8 bits (103), Expect = 7e-08
Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
Query: 22 TALYDFEPENPGELGFKEGDTITLMN-RVDENWYEGSL--NGRTGYFPVTYVQ 71
+ G L GD + L + NW+EG G+FP V
Sbjct: 22 YGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 74
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical
protein BAA76854.1, riken structural
genomics/proteomics initiative RSGI; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 92
Score = 43.1 bits (101), Expect = 2e-07
Identities = 9/59 (15%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 23 ALYDFEPENPGELGFKEGDTITLMNRVD----ENWYEGSLNGRTGYFPVTYVQVVVPLP 77
A +F ++ EGD + ++ + D +N + G+ ++++ P
Sbjct: 22 AERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPRR 80
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 43.1 bits (101), Expect = 7e-07
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 1 SPLPSPVRQGRTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSL-N 59
+P SP++ AL+ +EP + G+LGF++G+ + ++ + E W SL
Sbjct: 4 NPPASPLQDNL---------VIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTT 54
Query: 60 GRTGYFPVTYVQVVVPL 76
G+ G+ P +V L
Sbjct: 55 GQEGFIPFNFVAKANSL 71
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 42.2 bits (100), Expect = 2e-06
Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 1 SPLPSPVRQGRTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNG 60
P P PV+ G+ V ALY FEP P EL +EGD I + + D NW++G+ G
Sbjct: 3 KPPPKPVKPGQVKVFR------ALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKG 56
Query: 61 RTG 63
RTG
Sbjct: 57 RTG 59
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex,
GRB2,VAV, signaling protein/signaling protein complex;
1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 39.9 bits (93), Expect = 2e-06
Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 28 EPENPGELGFKEGDTITLMNR-VDENWYEGSL--NGRTGYFPVTYVQ 71
L GD + L + NW+EG G+FP V
Sbjct: 20 PGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 41.0 bits (95), Expect = 5e-06
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 23 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNG 60
++ EP P LGF GD +++ + + G
Sbjct: 9 THFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARG 46
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein
cargo binding, cargo proteins, motor protein-protein
transport complex; 2.80A {Mus musculus}
Length = 655
Score = 39.5 bits (91), Expect = 2e-05
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 10/70 (14%)
Query: 14 VVNKAPCCTALYD---FEPENPGELGFKEGDTITL-----MNRVDENWYEG--SLNGRTG 63
+ ++ AL D E G L F +GD I L ++ W G + G
Sbjct: 569 LRKRSKYVVALQDNPNPAGEESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRG 628
Query: 64 YFPVTYVQVV 73
FP V V+
Sbjct: 629 DFPTDCVYVM 638
>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo
sapiens} PDB: 2gto_A
Length = 96
Score = 34.7 bits (79), Expect = 4e-04
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 21 CTALYDFEPENPGELGFKEGDT---ITLMNRVDENWYEGSLNGRTGYFPVTYVQV 72
A D EL FK+G+ I + + + W + G GY T V++
Sbjct: 31 AKACCDV-KGGKNELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTTAVEI 84
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 34.3 bits (77), Expect = 0.001
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 15/68 (22%)
Query: 21 CTALYDFEPENPGELGFKEGDTITLMN-----RVDENWYEG----------SLNGRTGYF 65
A +D+ + EL K GD + ++ DE W G L G F
Sbjct: 145 VQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVF 204
Query: 66 PVTYVQVV 73
P + + V
Sbjct: 205 PENFTERV 212
>1u3o_A Huntingtin-associated protein-interacting protein; SH3,
CIS-proline,, signaling protein; NMR {Rattus
norvegicus}
Length = 82
Score = 32.3 bits (73), Expect = 0.003
Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 9/77 (11%)
Query: 6 PVRQGRTPVVNKAPCC---TALYDFEPENPGELGFKEGDTITLMNRVDEN--WYEGSLNG 60
P+ P + C L DF + EL + G T+ L+ R E W
Sbjct: 2 PLGSPGIPGSTLSGGCELTVVLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTE 61
Query: 61 RT----GYFPVTYVQVV 73
R+ G P + + +
Sbjct: 62 RSPPQEGLVPSSTLCIS 78
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 30.9 bits (70), Expect = 0.019
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 23 ALYDFEPENPGE-----LGFKEGDTITLMNRVDENWYEGSLNGRTG 63
AL+D++P L FK GD + + N D+ W++
Sbjct: 10 ALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWWQARRVLGDN 55
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 30.5 bits (69), Expect = 0.030
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 23 ALYDFEPE-----NPGELGFKEGDTITLMNRVDENW 53
AL+D++ L F+ GD + +++ DE W
Sbjct: 6 ALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEW 41
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin
adaptor, endocytosis, SAM domain, yeast, actin-BIND
membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Length = 72
Score = 28.3 bits (63), Expect = 0.068
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 24 LYDFEPENPGELGFKEGDTITLMNRVDE 51
+ D LG +EGD + +M +D+
Sbjct: 36 MPDINNSMLRTLGLREGDIVRVMKHLDK 63
>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606,
structural genomics, PSI-2, protein structure
initiative; NMR {Clostridium perfringens}
Length = 74
Score = 27.6 bits (62), Expect = 0.14
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 38 KEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 73
+ D + ++ VD WYE NG+ GY +Y+ +V
Sbjct: 28 RNNDKVEIIKEVD-GWYEIRFNGKVGYASKSYITIV 62
>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3
domain, structural genomics, protein structure
initiative; NMR {Bacillus thuringiensis
serovarkonkukian}
Length = 70
Score = 27.6 bits (62), Expect = 0.15
Identities = 8/36 (22%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 38 KEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 73
+G + +++ W + + NG+TGY Y+ +
Sbjct: 29 PQGQKVQVISENS-GWSKINYNGQTGYIGTRYLSKL 63
>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; NMR {Clostridium perfringens} PDB:
2kyb_A
Length = 76
Score = 27.3 bits (61), Expect = 0.20
Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 38 KEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 73
+T++ +Y+ G GY Y++ +
Sbjct: 30 SGNTKVTIVGEEG-AFYKIEYKGSHGYVAKEYIKDI 64
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A
1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 27.9 bits (61), Expect = 0.30
Identities = 7/54 (12%), Positives = 19/54 (35%), Gaps = 10/54 (18%)
Query: 23 ALYDFEPENPGE-------LGFKEGDTITLMNRVDENWYEGSL---NGRTGYFP 66
+ + + + F+ D + + + + +W+ G L G+ P
Sbjct: 43 TNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIP 96
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex,
transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae}
PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Length = 456
Score = 26.0 bits (58), Expect = 1.1
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 21 CTALYDFEPENPGELG 36
C AL F + GE+
Sbjct: 360 CAALKTFAEADCGEIA 375
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma
isoform; PP2A, shugoshin, nucleus, phosphoprotein,
hydrolase, iron, M metal-binding, methylation, protein
phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo
sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Length = 403
Score = 25.1 bits (54), Expect = 2.4
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 21 CTALYDFEPENPGELGFKEGDTITLMNRVD 50
C L+DF + +L +KE L V+
Sbjct: 16 CCVLFDFVSDPLSDLKWKEVKRAALSEMVE 45
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa
RE subunit gamma isoform; heat repeat, signaling
protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A
{Homo sapiens} SCOP: a.118.1.20
Length = 449
Score = 25.1 bits (54), Expect = 2.9
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 21 CTALYDFEPENPGELGFKEGDTITLMNRVD 50
C L+DF + +L +KE L V+
Sbjct: 49 CCVLFDFVSDPLSDLKWKEVKRAALSEMVE 78
>1mrj_A Alpha-trichosanthin; ribosome-inactivating protein; HET: ADN;
1.60A {Trichosanthes kirilowii} SCOP: d.165.1.1 PDB:
1mrk_A* 1qd2_A* 1tcs_A* 1j4g_A 1gis_A* 1giu_A* 2jdl_A
2jjr_A* 1nli_A* 2vs6_A 1bry_Y
Length = 247
Score = 24.7 bits (53), Expect = 4.0
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 34 ELGFKEGDTITLMNRVDENWYEGSLNGRTGYF 65
L +TI++ V + G G T YF
Sbjct: 51 HLTNYADETISVAIDVTNVYIMGYRAGDTSYF 82
>3sj6_A Ribosome inactivating protein; RIP, RNA N-glycosidase, plant
protein, ribose, inactivation, hydrolase; HET: NAG RIP;
1.60A {Momordica balsamina} PDB: 3n1n_A* 3n2d_A*
3n31_A* 3n3x_A* 3n5d_A* 3nfm_A* 3njs_A* 3nx9_A* 3q4p_A*
3qji_A* 3rl9_A* 3mrw_A* 3s9q_A* 3u6t_A* 3u6z_A* 3u70_A*
3u8f_A* 3v14_A* 3v2k_A* 4dwm_A* ...
Length = 246
Score = 24.3 bits (52), Expect = 5.5
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 34 ELGFKEGDTITLMNRVDENWYEGSLNGRTGYF 65
L +G+TIT+ V + G L T YF
Sbjct: 51 HLFNYDGNTITVAVDVTNVYIMGYLALTTSYF 82
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma
isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A
{Homo sapiens} SCOP: a.118.1.20
Length = 392
Score = 23.9 bits (51), Expect = 6.0
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 21 CTALYDFEPENPGELGFKEGDTITLMNRVD 50
C L+DF + +L +KE L V+
Sbjct: 61 CCVLFDFVSDPLSDLKWKEVKRAALSEMVE 90
>3ktz_A Ribosome-inactivating protein gelonin; plant seeds, glycosidase,
disulfide bond, glycoprotein, hydrolase, plant defense;
HET: NAG; 1.60A {Gelonium multiflorum} PDB: 3ku0_A*
Length = 251
Score = 23.9 bits (51), Expect = 7.6
Identities = 6/32 (18%), Positives = 8/32 (25%)
Query: 34 ELGFKEGDTITLMNRVDENWYEGSLNGRTGYF 65
L G + V + G YF
Sbjct: 55 ALSNDNGQLAEIAIDVTSVYVVGYQVRNRSYF 86
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.140 0.446
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,267,784
Number of extensions: 60678
Number of successful extensions: 500
Number of sequences better than 10.0: 1
Number of HSP's gapped: 362
Number of HSP's successfully gapped: 220
Length of query: 77
Length of database: 6,701,793
Length adjustment: 46
Effective length of query: 31
Effective length of database: 5,417,427
Effective search space: 167940237
Effective search space used: 167940237
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 51 (23.3 bits)